Citrus Sinensis ID: 018760

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Protein Sequence
MHKTPSGSSLGPGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHcccccccccccccccccEEEEcccHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHccccccEEEEcccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHccccccEEcccccHHHHHHHHHHHHHcccccccEEEEEEccccccccccccccEEEcEEcccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccEEEEccEEEccccccEEEcccccHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccHcHcccccccHHHHHHHHccccccccccccccEEEEEcccHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHHcHHHcccccEEEcccHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHcccHHHEEEcccHHHHHHHHHHHHHHHcccHHHEEccEEEccccccEEcHHHcEEccEEHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccEEEEEEEEcccccccccccEEEEEEEEEcccccEEEEEccccHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mhktpsgsslgpggldltqtffkpinhaappsptkrhtkisvigtgNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFkaiipplvkyspdcilLIVANPVDILTYVAWKLsglpsnrvigsgtnldssRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSIsvggvpilsFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIirdqrkihpvsvlakgfygidggdvflslpaqlgrggvlgvTNIHLNQEESHRLRNSAKTILEVQSQLGI
Flexible Loop (DISEMBL)
mhktpsgsslgpggLDLTQTFFKPInhaappsptkrhTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNqeeshrlrnsakTILEVQSQLGI
Low Complexity Region (SEG)
MHKTpsgsslgpgglDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEsrlnllqrnlslFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI
Disordered region (IsUnstruct)
********************FF***************TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLN***********************
Disordered Region (DISOPRED)
****************************************SVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI
Disordered Region (DISEMBL)
**********GPGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI
Disordered Region (DISPRO)
***********PGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHKTPSGSSLGPGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	350	2.2.26 [Sep-21-2011]
P22988	356	L-lactate dehydrogenase A	N/A	no	0.977	0.960	0.651	1e-129
P22989	344	L-lactate dehydrogenase B	N/A	no	0.957	0.973	0.649	1e-127
P29038	354	L-lactate dehydrogenase O	N/A	no	0.997	0.985	0.628	1e-117
Q9XT87	332	L-lactate dehydrogenase A	yes	no	0.888	0.936	0.564	1e-101
P06151	332	L-lactate dehydrogenase A	yes	no	0.888	0.936	0.570	1e-101
Q98SL0	332	L-lactate dehydrogenase A	N/A	no	0.888	0.936	0.557	1e-100
Q9PT43	332	L-lactate dehydrogenase A	N/A	no	0.888	0.936	0.564	1e-100
P79912	332	L-lactate dehydrogenase A	N/A	no	0.888	0.936	0.570	1e-99
P33571	334	L-lactate dehydrogenase O	N/A	no	0.917	0.961	0.549	1e-99
Q98SL2	332	L-lactate dehydrogenase A	N/A	no	0.888	0.936	0.560	2e-99

>sp|P22988|LDHA_HORVU L-lactate dehydrogenase A OS=Hordeum vulgare PE=1 SV=1

 Score =  460 bits (1183), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/350 (65%), Positives = 277/350 (79%), Gaps = 8/350 (2%)

Query: 1   MHKTPSGSSLGPGGLDLTQTFFKPINHAAPPSPT------KRHTKISVIGTGNVGMAIAQ 54
           MHK  S S LG      +  FF+P+    P +PT      +R TKISVIG GNVGMAIAQ
Sbjct: 1   MHKASSLSELGFDAGGASSGFFRPVADGCPATPTSSAVPHRRLTKISVIGAGNVGMAIAQ 60

Query: 55  TILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAG 114
           TILTQ+  +E+ALVDA  DKLRGE LDLQHAAAFLPR +I +  D AVT  SDL IVTAG
Sbjct: 61  TILTQNLADEIALVDALPDKLRGEALDLQHAAAFLPRVRI-SGTDAAVTKNSDLVIVTAG 119

Query: 115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNR 174
           ARQI GE+RLNLLQRN++L++ I+PP+ ++SPD +LL+V+NPVD+LTYVAWKLSG P++R
Sbjct: 120 ARQIPGETRLNLLQRNVALYRKIVPPVAEHSPDALLLVVSNPVDVLTYVAWKLSGFPASR 179

Query: 175 VIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEK 234
           VIGSGTNLDSSRFRFL+A+HLDVNAQDVQAY+VGEHGDSSVA+WSSISVGG+P    L  
Sbjct: 180 VIGSGTNLDSSRFRFLIAEHLDVNAQDVQAYMVGEHGDSSVAIWSSISVGGMPAFKSLRD 239

Query: 235 QQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLA 294
              ++++  LE I + VV  AYEVI LKGYTSWAIGYS A+LA S++RDQR++HPVSVLA
Sbjct: 240 SHRSFDEAALEGIRRAVVGGAYEVIGLKGYTSWAIGYSVASLAASLLRDQRRVHPVSVLA 299

Query: 295 KGFYGI-DGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILE 343
            GF+GI DG +VFLSLPA+LGRGG+LGV  + L + E+ +LR SAKT+ E
Sbjct: 300 SGFHGISDGHEVFLSLPARLGRGGILGVAEMDLTEAEAAQLRRSAKTLWE 349

Hordeum vulgare (taxid: 4513)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 7

>sp|P22989|LDHB_HORVU L-lactate dehydrogenase B (Fragment) OS=Hordeum vulgare PE=1 SV=1

 Score =  455 bits (1171), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/342 (64%), Positives = 275/342 (80%), Gaps = 7/342 (2%)

Query: 16  DLTQTFFK------PINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVD 69
           D +  FF+      PI H +  +P +R TK+SVIG GNVGMAIAQTILTQ+  +E+ALVD
Sbjct: 3   DASSGFFRAVADGCPITHTSCSAPHRRLTKVSVIGAGNVGMAIAQTILTQNLADEIALVD 62

Query: 70  AKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQR 129
           A  DKLRGE LDLQHAAAFLPR +I++  D AVT  SDL +VTAGARQI GE+RLNLLQR
Sbjct: 63  ALPDKLRGEALDLQHAAAFLPRVRIVSGTDAAVTKNSDLIVVTAGARQIPGETRLNLLQR 122

Query: 130 NLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRF 189
           N++L++ I+PP+ ++SPD +LL+V+NPVD+LTYVAWKLSG P++RVIGSGTNLDSSRFRF
Sbjct: 123 NVALYRKIVPPVAEHSPDALLLVVSNPVDVLTYVAWKLSGFPASRVIGSGTNLDSSRFRF 182

Query: 190 LLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHK 249
           L+A+HLDV+AQDVQAY+VGEHGDSSVA+WSSISVGG+P L  L     ++++  LE I +
Sbjct: 183 LVAEHLDVSAQDVQAYMVGEHGDSSVAIWSSISVGGMPALKSLRDSHRSFDEAALEGIRR 242

Query: 250 EVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGI-DGGDVFLS 308
            VV  AYEVI LKGYTSWAIGYS A+LA S++RDQR++HPVSVLA GF+GI DG +VFLS
Sbjct: 243 AVVGGAYEVIGLKGYTSWAIGYSVASLATSLLRDQRRVHPVSVLAAGFHGISDGHEVFLS 302

Query: 309 LPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI 350
           LPA+LGR GVLGV  + L + E+ +LR SAKT+ E    LG+
Sbjct: 303 LPARLGRAGVLGVAEMDLTEAEAAQLRRSAKTLWENCQLLGL 344

Hordeum vulgare (taxid: 4513)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|P29038|LDH_MAIZE L-lactate dehydrogenase OS=Zea mays PE=2 SV=1

 Score =  421 bits (1083), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/355 (62%), Positives = 273/355 (76%), Gaps = 6/355 (1%)

Query: 1   MHKTPSGSSLGPGGLDLTQTFFKPINHAAPPSPTKRH-----TKISVIGTGNVGMAIAQT 55
           M K  S S LG    D +  FF+P++     +PT +H     TK+SVIG GNVGMAIAQT
Sbjct: 1   MKKATSLSELGFDAGDASSGFFRPVS-GDSSTPTSQHHRRRLTKVSVIGAGNVGMAIAQT 59

Query: 56  ILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGA 115
           ILT+D  +E+ALVDA  DKLRGEMLDLQHAAAFLPRT++++  D +VT GSDL IVTAGA
Sbjct: 60  ILTRDLADEIALVDAVPDKLRGEMLDLQHAAAFLPRTRLVSGTDMSVTRGSDLVIVTAGA 119

Query: 116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRV 175
           RQI GE+RL+LLQRN++LF+ I+PPL + S D +LL+V+NPVD+LTYVAWKLSG P++RV
Sbjct: 120 RQIQGETRLDLLQRNVALFRKIVPPLAEQSHDALLLVVSNPVDVLTYVAWKLSGFPASRV 179

Query: 176 IGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQ 235
           IGSGTNLDSSRFRFLLA+HLDVNAQDVQAY+VGEHGDSSVA+WSS+SV G+P+L  L++ 
Sbjct: 180 IGSGTNLDSSRFRFLLAEHLDVNAQDVQAYMVGEHGDSSVAVWSSVSVAGMPVLKSLQES 239

Query: 236 QIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAK 295
              +++E LE I + VVDSAYEVISLKGYTSWAIGYS A+LA S++RDQR+IHPVSVLA+
Sbjct: 240 HRCFDEEALEGIRRAVVDSAYEVISLKGYTSWAIGYSVASLAASLLRDQRRIHPVSVLAR 299

Query: 296 GFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI 350
           GF+GI  G    S           G   + L +EE+ RLR SAKTI E    LG+
Sbjct: 300 GFHGIPDGTTSSSACPPRRPRRRPGRREMELTEEEAKRLRRSAKTIWENCQLLGL 354

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|Q9XT87|LDHA_MONDO L-lactate dehydrogenase A chain OS=Monodelphis domestica GN=LDHA PE=2 SV=3

 Score =  367 bits (943), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/312 (56%), Positives = 231/312 (74%), Gaps = 1/312 (0%)

Query: 37  HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
           H KI+V+G G VGMA A +IL +D  +ELALVD   DKL+GEM+DLQH + FL   KI++
Sbjct: 20  HNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVS 79

Query: 97  SVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP 156
           S DYAVTA S L ++TAGARQ  GESRLNL+QRN+++FK IIP +VKYSP+C LL+V+NP
Sbjct: 80  SKDYAVTANSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNP 139

Query: 157 VDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVA 216
           VDILTYVAWKLSG P NRVIGSG NLDS+RFR+L+ + L +++     +I+GEHGDSSV 
Sbjct: 140 VDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYLMGEKLGIHSSSCHGWILGEHGDSSVP 199

Query: 217 LWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANL 276
           +WS ++V GV + S         + E  + +HK+VV+SAYEVI LKGYTSWAIG S A+L
Sbjct: 200 VWSGVNVAGVSLKSLHPALGTDSDSEQWKDVHKQVVESAYEVIKLKGYTSWAIGLSVADL 259

Query: 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336
           A SI+++ R++HP+S + KG YGI+  DVFLS+P  LG+ G+  V  + L  EE  RL+ 
Sbjct: 260 AESIMKNLRRVHPISTMIKGLYGIN-EDVFLSVPCILGQNGISDVVKVTLTTEEESRLKQ 318

Query: 337 SAKTILEVQSQL 348
           SA T+  +Q +L
Sbjct: 319 SADTLWGIQKEL 330

Monodelphis domestica (taxid: 13616)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|P06151|LDHA_MOUSE L-lactate dehydrogenase A chain OS=Mus musculus GN=Ldha PE=1 SV=3

 Score =  367 bits (942), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/312 (57%), Positives = 230/312 (73%), Gaps = 1/312 (0%)

Query: 37  HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
             KI+V+G G VGMA A +IL +D  +ELALVD   DKL+GEM+DLQH + FL   KI++
Sbjct: 20  QNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLKTPKIVS 79

Query: 97  SVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP 156
           S DY VTA S L I+TAGARQ  GESRLNL+QRN+++FK IIP +VKYSP C LLIV+NP
Sbjct: 80  SKDYCVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPHCKLLIVSNP 139

Query: 157 VDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVA 216
           VDILTYVAWK+SG P NRVIGSG NLDS+RFR+L+ + L V+A     +++GEHGDSSV 
Sbjct: 140 VDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWVLGEHGDSSVP 199

Query: 217 LWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANL 276
           +WS ++V GV + S   +     +KE  + +HK+VVDSAYEVI LKGYTSWAIG S A+L
Sbjct: 200 VWSGVNVAGVSLKSLNPELGTDADKEQWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADL 259

Query: 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336
           A SI+++ R++HP+S + KG YGI+  DVFLS+P  LG+ G+  V  + L  EE  RL+ 
Sbjct: 260 AESIMKNLRRVHPISTMIKGLYGIN-EDVFLSVPCILGQNGISDVVKVTLTPEEEARLKK 318

Query: 337 SAKTILEVQSQL 348
           SA T+  +Q +L
Sbjct: 319 SADTLWGIQKEL 330

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|Q98SL0|LDHA_PELSJ L-lactate dehydrogenase A chain OS=Pelodiscus sinensis japonicus GN=LDHA PE=2 SV=3

 Score =  366 bits (940), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/312 (55%), Positives = 230/312 (73%), Gaps = 1/312 (0%)

Query: 37  HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
           H KI+V+G G VGMA A +IL +D  +ELALVD   DKLRGEMLDLQH + FL   KI++
Sbjct: 20  HNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLRGEMLDLQHGSLFLRTPKIVS 79

Query: 97  SVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP 156
             DY+VTA S L I+TAGARQ  GESRLNL+QRN+++FK IIP +VKYSPDC+LL+V+NP
Sbjct: 80  GKDYSVTAHSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPDCMLLVVSNP 139

Query: 157 VDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVA 216
           VDILTYVAWK+SG P +RVIGSG NLDS+RFR+L+ + L +++     +I+GEHGDSSV 
Sbjct: 140 VDILTYVAWKISGFPKHRVIGSGCNLDSARFRYLMGEKLGIHSLSCHGWIIGEHGDSSVP 199

Query: 217 LWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANL 276
           +WS ++V GV + +         +KE  + +HK+VVDSAYEVI LKGYTSWAIG S A+L
Sbjct: 200 VWSGVNVAGVSLKALYPDLGTDADKEHWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADL 259

Query: 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336
           A +++++ R++HP+S + KG YG+   DVFLS+P  LG  G+  V  + L  EE  +LR 
Sbjct: 260 AETVMKNLRRVHPISTMVKGMYGV-SSDVFLSVPCVLGYAGITDVVKMTLKSEEEEKLRK 318

Query: 337 SAKTILEVQSQL 348
           SA T+  +Q +L
Sbjct: 319 SADTLWGIQKEL 330

Pelodiscus sinensis japonicus (taxid: 34908)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|Q9PT43|LDHA_TRASC L-lactate dehydrogenase A chain OS=Trachemys scripta GN=LDHA PE=2 SV=3

 Score =  363 bits (933), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/312 (56%), Positives = 228/312 (73%), Gaps = 1/312 (0%)

Query: 37  HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
           H KI+V+G G VGMA A +IL +D  +ELALVD   DKLRGEMLDLQH + FL   KI++
Sbjct: 20  HNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLRGEMLDLQHGSLFLRTPKIVS 79

Query: 97  SVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP 156
             DY+VTA S L I+TAGARQ  GESRLNL+QRN+++FK IIP +VK+SPDC LL+V+NP
Sbjct: 80  GKDYSVTAHSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKHSPDCTLLVVSNP 139

Query: 157 VDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVA 216
           VDILTYVAWK+SG P +RVIGSG NLDS+RFR+L+   L +++     +I+GEHGDSSV 
Sbjct: 140 VDILTYVAWKISGFPKHRVIGSGCNLDSARFRYLMGGKLGIHSLSCHGWIIGEHGDSSVP 199

Query: 217 LWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANL 276
           +WS ++V GV + +         +KE  + +HK+VVDSAYEVI LKGYTSWAIG S A+L
Sbjct: 200 VWSGVNVAGVSLKALYPDLGTDADKEHWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADL 259

Query: 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336
           A +I+R+ R++HP+S + KG YGI   DVFLS+P  LG  G+  V  + L  EE  +LR 
Sbjct: 260 AETIMRNLRRVHPISTMVKGMYGIH-DDVFLSVPCVLGYSGITDVVKMTLKSEEEEKLRK 318

Query: 337 SAKTILEVQSQL 348
           SA T+  +Q +L
Sbjct: 319 SADTLWGIQKEL 330

Trachemys scripta (taxid: 34903)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|P79912|LDHA_SCEWO L-lactate dehydrogenase A chain OS=Sceloporus woodi GN=LDHA PE=2 SV=4

 Score =  363 bits (932), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 178/312 (57%), Positives = 228/312 (73%), Gaps = 1/312 (0%)

Query: 37  HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
           H KI+V+G G VGMA A +IL +D  +ELALVD   DKL+GEMLDLQH + FL   KI++
Sbjct: 20  HNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMLDLQHGSLFLRTPKIVS 79

Query: 97  SVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP 156
             DYAVTA S L I+TAGARQ  GESRLNL+QRN+++FK IIP +VKYSPDC LL+V+NP
Sbjct: 80  GKDYAVTAHSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPDCKLLVVSNP 139

Query: 157 VDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVA 216
           VDILTYVAWK+SG P +RVIGSG NLDS+RFR L+A+ L ++      +IVGEHGDSSV 
Sbjct: 140 VDILTYVAWKISGFPKHRVIGSGCNLDSARFRHLMAEKLGIHPLSCHGWIVGEHGDSSVP 199

Query: 217 LWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANL 276
           +WS ++V GV +           +KE  + +HK+VVDSAYEVI LKGYTSWAIG S A+L
Sbjct: 200 VWSGVNVAGVSLKGLHPDMGTDGDKENWKQVHKQVVDSAYEVIKLKGYTSWAIGLSVADL 259

Query: 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336
           A +I+++ R++HPVS + KG +GI+  DVFLS+P  LG  G+  V  + L  EE  +LR 
Sbjct: 260 AETIMKNLRRVHPVSTMVKGMHGIN-DDVFLSVPCVLGYSGITDVVKMTLKSEEEDKLRK 318

Query: 337 SAKTILEVQSQL 348
           SA T+  +Q +L
Sbjct: 319 SADTLWGIQKEL 330

Sceloporus woodi (taxid: 59726)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|P33571|LDH_PETMA L-lactate dehydrogenase OS=Petromyzon marinus PE=2 SV=3

 Score =  363 bits (931), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 178/324 (54%), Positives = 238/324 (73%), Gaps = 3/324 (0%)

Query: 27  HAAPPSPTKR--HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH 84
           H   PS  +   H+K++++G G VGMA A ++L +D  +ELALVD   D+L+GEM+DL H
Sbjct: 10  HEMVPSKERDPPHSKVTIVGVGQVGMAAAISVLLRDLADELALVDVVEDRLKGEMMDLLH 69

Query: 85  AAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY 144
            + FL   KI+A  DY+VTAGS L +VTAGARQ  GESRLNL+QRN+++FK IIP +VKY
Sbjct: 70  GSLFLKTAKIVADKDYSVTAGSRLVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKY 129

Query: 145 SPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQA 204
           SP+CILL+V+NPVDILTYVAWKLSGLP +RVIGSG NLDS+RFR+L+++ L VN+     
Sbjct: 130 SPNCILLVVSNPVDILTYVAWKLSGLPKHRVIGSGCNLDSARFRYLMSERLGVNSASCHG 189

Query: 205 YIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGY 264
           +I+GEHGDSSV +WS ++V GV + S         + E  +S+HK+VVDSAYEVI LKGY
Sbjct: 190 WIIGEHGDSSVPVWSGVNVAGVGLQSLNPDIGTPKDGEDWKSVHKQVVDSAYEVIKLKGY 249

Query: 265 TSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNI 324
           TSWAIG S A+LA +I+++ R++HPVS   KG +G+   DVFLSLP  LG  G+  + N 
Sbjct: 250 TSWAIGLSVADLAETILKNLRRVHPVSTHCKGQHGVH-DDVFLSLPCVLGSEGITDIINQ 308

Query: 325 HLNQEESHRLRNSAKTILEVQSQL 348
            L +EE  +++ SA+T+  VQ +L
Sbjct: 309 TLKKEEEAQVQKSAETLWNVQKEL 332

Petromyzon marinus (taxid: 7757)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

>sp|Q98SL2|LDHA_CAICA L-lactate dehydrogenase A chain OS=Caiman crocodilus apaporiensis GN=LDHA PE=2 SV=3

 Score =  362 bits (930), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 175/312 (56%), Positives = 229/312 (73%), Gaps = 1/312 (0%)

Query: 37  HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
           H KI+V+G G VGMA A +IL +D  +ELALVD   DKLRGEMLDLQH + FL   KI++
Sbjct: 20  HNKITVVGVGAVGMACAISILMKDLADELALVDVVEDKLRGEMLDLQHGSLFLRTPKIVS 79

Query: 97  SVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP 156
             DY+VTA S L I+TAGARQ  GESRLNL+QRN+++FK IIP +VK+SPDC LL+V+NP
Sbjct: 80  GKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKHSPDCKLLVVSNP 139

Query: 157 VDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVA 216
           VDILTYVAWK+SG P +RVIGSG NLDS+RFR+L+ + L ++      +IVGEHGDSSV 
Sbjct: 140 VDILTYVAWKISGFPKHRVIGSGCNLDSARFRYLMGERLGIHPLSCHGWIVGEHGDSSVP 199

Query: 217 LWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANL 276
           +WS ++V GV + +   +     +KE  + +HKEVVDSAYEVI LKGYTSWAIG S A+L
Sbjct: 200 VWSGVNVAGVSLKALHPELGTDADKEHWKEVHKEVVDSAYEVIKLKGYTSWAIGLSVADL 259

Query: 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336
           A +++++ R++HP+S + KG YGI   DVFLS+P  LG  G+  V  + L  EE  ++R 
Sbjct: 260 AETVMKNLRRVHPISTMVKGMYGIK-DDVFLSVPCVLGYHGITDVVMMTLKSEEEEKIRK 318

Query: 337 SAKTILEVQSQL 348
           SA T+  +Q +L
Sbjct: 319 SADTLWGIQKEL 330

Caiman crocodilus apaporiensis (taxid: 157164)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
225427017	350	PREDICTED: L-lactate dehydrogenase A [Vi	1.0	1.0	0.877	0.0
147778596	350	hypothetical protein VITISV_032950 [Viti	1.0	1.0	0.868	1e-179
255569877	350	l-lactate dehydrogenase, putative [Ricin	1.0	1.0	0.865	1e-178
255569879	350	l-lactate dehydrogenase, putative [Ricin	1.0	1.0	0.865	1e-178
357482011	350	L-lactate dehydrogenase [Medicago trunca	1.0	1.0	0.854	1e-177
356514254	349	PREDICTED: L-lactate dehydrogenase A-lik	0.997	1.0	0.851	1e-176
306450603	350	lactate dehydrogenase [Camellia sinensis	1.0	1.0	0.848	1e-175
224071545	350	predicted protein [Populus trichocarpa]	1.0	1.0	0.845	1e-174
1620970	350	L-lactate dehydrogenase [Solanum lycoper	1.0	1.0	0.86	1e-174
356563314	349	PREDICTED: L-lactate dehydrogenase A-lik	0.997	1.0	0.845	1e-173

>gi|225427017|ref|XP_002271251.1| PREDICTED: L-lactate dehydrogenase A [Vitis vinifera] gi|297741178|emb|CBI31909.3| unnamed protein product [Vitis vinifera]

 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/350 (87%), Positives = 330/350 (94%)

Query: 1   MHKTPSGSSLGPGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQD 60
           MHK+ S SSLGPGGLDLTQ FFKPI   APPSPTKRHTK+SVIG GNVGMAIAQTILTQD
Sbjct: 1   MHKSGSASSLGPGGLDLTQAFFKPIQQTAPPSPTKRHTKVSVIGVGNVGMAIAQTILTQD 60

Query: 61  FVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAG 120
            V+ELALVD  ADKLRGEMLDLQHAAAFLPRTKI ASVDYA+TAGSDLCIVTAGARQIAG
Sbjct: 61  LVDELALVDVNADKLRGEMLDLQHAAAFLPRTKIHASVDYAITAGSDLCIVTAGARQIAG 120

Query: 121 ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGT 180
           ESRLNLLQRN+SLF  I+PPL KYSPD ILLIV+NPVDILTYVAWKLSG PSNRV+GSGT
Sbjct: 121 ESRLNLLQRNVSLFSRIVPPLAKYSPDSILLIVSNPVDILTYVAWKLSGFPSNRVLGSGT 180

Query: 181 NLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYE 240
           NLDSSRFRFL+ADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVP+LSFLEKQQIAYE
Sbjct: 181 NLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPVLSFLEKQQIAYE 240

Query: 241 KETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGI 300
           KETLE+IHK V+DSAYEVISLKGYTSWAIGYSAA+LARSI+R+QR+IHPVSVLAKGFYGI
Sbjct: 241 KETLENIHKAVIDSAYEVISLKGYTSWAIGYSAASLARSILRNQRRIHPVSVLAKGFYGI 300

Query: 301 DGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI 350
           +GGDVFLSLPAQLGRGG+LGVTN+HL  EE+ RLR+SAKTILEVQ+QLG+
Sbjct: 301 EGGDVFLSLPAQLGRGGILGVTNVHLTDEEAQRLRDSAKTILEVQNQLGL 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147778596|emb|CAN75749.1| hypothetical protein VITISV_032950 [Vitis vinifera]

 Score =  635 bits (1637), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 304/350 (86%), Positives = 329/350 (94%)

Query: 1   MHKTPSGSSLGPGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQD 60
           MHK+ S S+LGPGGLDLTQ FFKPI   APPSPTKRHTK+SVIG GNVGMAIAQTILTQD
Sbjct: 1   MHKSGSASALGPGGLDLTQAFFKPIQQTAPPSPTKRHTKVSVIGVGNVGMAIAQTILTQD 60

Query: 61  FVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAG 120
            V+ELALVD  A+KLRGEMLDLQHAAAFLPRTKI ASVDYA+T GSDLCIVTAGARQIAG
Sbjct: 61  LVDELALVDVNANKLRGEMLDLQHAAAFLPRTKIHASVDYAITXGSDLCIVTAGARQIAG 120

Query: 121 ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGT 180
           ESRLNLLQRN+SLF  I+PPL KYSPD ILLIV+NPVDILTYVAWKLSG PSNRV+GSGT
Sbjct: 121 ESRLNLLQRNVSLFSRIVPPLAKYSPDSILLIVSNPVDILTYVAWKLSGFPSNRVLGSGT 180

Query: 181 NLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYE 240
           NLDSSRFRFL+ADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVP+LSFLEKQQIAYE
Sbjct: 181 NLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPVLSFLEKQQIAYE 240

Query: 241 KETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGI 300
           KETLE+IHK V+DSAYEVISLKGYTSWAIGYSAA+LARSI+R+QR+IHPVSVLAKGFYGI
Sbjct: 241 KETLENIHKAVIDSAYEVISLKGYTSWAIGYSAASLARSILRNQRRIHPVSVLAKGFYGI 300

Query: 301 DGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI 350
           +GGDVFLSLPAQLGRGG+LGVTN+HL  EE+ RLR+SAKTILEVQ+QLG+
Sbjct: 301 EGGDVFLSLPAQLGRGGILGVTNVHLTDEEAQRLRDSAKTILEVQNQLGL 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569877|ref|XP_002525902.1| l-lactate dehydrogenase, putative [Ricinus communis] gi|223534816|gb|EEF36506.1| l-lactate dehydrogenase, putative [Ricinus communis]

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 303/350 (86%), Positives = 329/350 (94%)

Query: 1   MHKTPSGSSLGPGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQD 60
           M ++ S +SLGPGGLDL+Q FFKPI++ +PPSPTKRHTKISVIGTGNVGMAIAQTILTQD
Sbjct: 1   MQQSSSAASLGPGGLDLSQVFFKPIHNTSPPSPTKRHTKISVIGTGNVGMAIAQTILTQD 60

Query: 61  FVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAG 120
             +ELALVD   +KLRGEMLDLQHAAAFLPRTKILAS DY+VT GSDLCIVTAGARQI G
Sbjct: 61  LADELALVDVNPNKLRGEMLDLQHAAAFLPRTKILASPDYSVTIGSDLCIVTAGARQIPG 120

Query: 121 ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGT 180
           ESRLNLLQRN++LFK IIPPL KYSPD IL+IV+NPVDILT++AWKLSG PSNRV+GSGT
Sbjct: 121 ESRLNLLQRNVTLFKNIIPPLAKYSPDSILMIVSNPVDILTFIAWKLSGFPSNRVVGSGT 180

Query: 181 NLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYE 240
           NLDSSRFRFL+ADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQ IAYE
Sbjct: 181 NLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQDIAYE 240

Query: 241 KETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGI 300
           KETLE+IHK VVDSAYEVISLKGYTSWAIGYSAANLARS++RDQRKIHPVSVLAKGFYGI
Sbjct: 241 KETLENIHKAVVDSAYEVISLKGYTSWAIGYSAANLARSLLRDQRKIHPVSVLAKGFYGI 300

Query: 301 DGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI 350
           DGGDVFLSLPAQLGRGGVLGVTN+HL +EE+ RLR+SAKT+LEVQSQLGI
Sbjct: 301 DGGDVFLSLPAQLGRGGVLGVTNVHLTEEEAQRLRDSAKTLLEVQSQLGI 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569879|ref|XP_002525903.1| l-lactate dehydrogenase, putative [Ricinus communis] gi|223534817|gb|EEF36507.1| l-lactate dehydrogenase, putative [Ricinus communis]

 Score =  630 bits (1626), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 303/350 (86%), Positives = 327/350 (93%)

Query: 1   MHKTPSGSSLGPGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQD 60
           M K+PS SSLGPGGLD++Q FFK I++ APPSPTKRHTKISVIG GNVGMAIAQTILTQD
Sbjct: 1   MQKSPSASSLGPGGLDISQVFFKTIHNTAPPSPTKRHTKISVIGAGNVGMAIAQTILTQD 60

Query: 61  FVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAG 120
             +ELALVDA  +KLRGEMLDLQHAAAFLPRTKILAS DY+VT GSDLCIV+AGARQIAG
Sbjct: 61  LADELALVDANPEKLRGEMLDLQHAAAFLPRTKILASTDYSVTVGSDLCIVSAGARQIAG 120

Query: 121 ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGT 180
           ESRLNLLQRN++LFK IIPPL K+SPD IL+IV+NPVD+LTY+AWKLSG PSNRVIGSGT
Sbjct: 121 ESRLNLLQRNVALFKMIIPPLAKFSPDSILMIVSNPVDVLTYIAWKLSGFPSNRVIGSGT 180

Query: 181 NLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYE 240
           NLDSSRFRFL+ADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYE
Sbjct: 181 NLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYE 240

Query: 241 KETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGI 300
           +ETLE+IHK VV SAYEVISLKGYTSWAIGYSAANLARSI+RDQRKIHPVSVLAKGFYGI
Sbjct: 241 QETLENIHKAVVHSAYEVISLKGYTSWAIGYSAANLARSILRDQRKIHPVSVLAKGFYGI 300

Query: 301 DGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI 350
           DGGDVFLSLPAQL RGGVLGVTN+HL +EE+ RLR SAKT+LEVQSQL I
Sbjct: 301 DGGDVFLSLPAQLARGGVLGVTNVHLTEEEAKRLRESAKTLLEVQSQLVI 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482011|ref|XP_003611291.1| L-lactate dehydrogenase [Medicago truncatula] gi|355512626|gb|AES94249.1| L-lactate dehydrogenase [Medicago truncatula]

 Score =  625 bits (1612), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 299/350 (85%), Positives = 326/350 (93%)

Query: 1   MHKTPSGSSLGPGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQD 60
           MHK+ SGSSLGP GLDLTQ+FFK I HA+PPSPTKRH KISVIG GNVGMAIAQTILTQD
Sbjct: 1   MHKSISGSSLGPDGLDLTQSFFKSIQHASPPSPTKRHNKISVIGAGNVGMAIAQTILTQD 60

Query: 61  FVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAG 120
            V+EL LVDA  DKLRGEMLDLQHAAAFLPRTKI AS DY+VT GSDLCIVTAGARQI G
Sbjct: 61  LVDELVLVDAIPDKLRGEMLDLQHAAAFLPRTKIQASTDYSVTMGSDLCIVTAGARQING 120

Query: 121 ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGT 180
           ESRLNLLQRN++LFK IIPPLV+YSP C+LLIV+NPVD+LTY+AWKLSG PSNRVIGSGT
Sbjct: 121 ESRLNLLQRNVALFKKIIPPLVRYSPHCVLLIVSNPVDVLTYIAWKLSGFPSNRVIGSGT 180

Query: 181 NLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYE 240
           NLDSSRFRFL+ADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVP+LSFLEKQQIAYE
Sbjct: 181 NLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPVLSFLEKQQIAYE 240

Query: 241 KETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGI 300
           KE LE+IHKEV++ AYEVISLKGYTSWAIGYS ANLAR+I+R+QRKIHPVSVLAKGFYGI
Sbjct: 241 KEMLENIHKEVINGAYEVISLKGYTSWAIGYSVANLARTIMRNQRKIHPVSVLAKGFYGI 300

Query: 301 DGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI 350
           DGG+VF+SLPAQLGRGGVLGVTNIH+ +EE  RLR+SA TILE+Q+QLGI
Sbjct: 301 DGGEVFISLPAQLGRGGVLGVTNIHMTEEEMKRLRDSAITILELQNQLGI 350

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514254|ref|XP_003525821.1| PREDICTED: L-lactate dehydrogenase A-like [Glycine max]

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 298/350 (85%), Positives = 325/350 (92%), Gaps = 1/350 (0%)

Query: 1   MHKTPSGSSLGPGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQD 60
           MHK+ S S+LGPGGLDL+Q FF+PIN+AAPPSPTKRH KISVIG GNVGMAIAQTILTQD
Sbjct: 1   MHKSSSDSTLGPGGLDLSQAFFRPINNAAPPSPTKRHNKISVIGAGNVGMAIAQTILTQD 60

Query: 61  FVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAG 120
             +EL LVD  +DKLRGEMLDLQHAAAFLPRTKI AS D +VTAGSDLCIVTAGARQI+G
Sbjct: 61  LTDELVLVDTNSDKLRGEMLDLQHAAAFLPRTKIHASADSSVTAGSDLCIVTAGARQISG 120

Query: 121 ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGT 180
           ESRLNLLQRNLSLF+AIIPPLV+YSPD  LLIV+NPVD+LTYVAWKLSG PSNRVIGSGT
Sbjct: 121 ESRLNLLQRNLSLFRAIIPPLVRYSPDTTLLIVSNPVDVLTYVAWKLSGFPSNRVIGSGT 180

Query: 181 NLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYE 240
           NLDSSRFRFL+ADHLDVNAQDVQAYIVGEHGDSSVALWSSIS+GGVP+LSFLE QQI YE
Sbjct: 181 NLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSISIGGVPVLSFLENQQIVYE 240

Query: 241 KETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGI 300
           KETLE+IHK V+DSAYEVI LKGYTSWAIGYS ANLARS IR+QRKIHPVSVLAKGFYGI
Sbjct: 241 KETLENIHKSVIDSAYEVIKLKGYTSWAIGYSVANLARSFIRNQRKIHPVSVLAKGFYGI 300

Query: 301 DGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI 350
           D G+VFLSLPA +GRGG+LGVTN+HLN+EE+ RLR+SAKTILEVQ+QLGI
Sbjct: 301 D-GEVFLSLPAMIGRGGILGVTNVHLNEEETQRLRDSAKTILEVQTQLGI 349

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|306450603|gb|ADM88555.1| lactate dehydrogenase [Camellia sinensis]

 Score =  619 bits (1596), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 297/350 (84%), Positives = 324/350 (92%)

Query: 1   MHKTPSGSSLGPGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQD 60
           MH T S SSLGPGGLD+ Q FFKPI + APPSPT RHTKISVIGTGNVGMAIAQTILTQD
Sbjct: 1   MHHTESSSSLGPGGLDIAQAFFKPIQNMAPPSPTNRHTKISVIGTGNVGMAIAQTILTQD 60

Query: 61  FVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAG 120
             +ELALVDA  +KLRGEMLDLQHAAAFLPRTKILASVDY+VTAGSDLCIVTAGARQ  G
Sbjct: 61  LADELALVDAIPNKLRGEMLDLQHAAAFLPRTKILASVDYSVTAGSDLCIVTAGARQNPG 120

Query: 121 ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGT 180
           ESRLNLLQRN++LF  I+PPL K+SP+ ILLIV+NPVD+LTYVAWKLSG PSNRVIGSGT
Sbjct: 121 ESRLNLLQRNVALFSKIVPPLAKHSPETILLIVSNPVDVLTYVAWKLSGFPSNRVIGSGT 180

Query: 181 NLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYE 240
           NLDSSRFRFL+ADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVP+LSFLE+QQIAYE
Sbjct: 181 NLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPVLSFLERQQIAYE 240

Query: 241 KETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGI 300
           KETLE IHKEVV+SAYEVISLKGYTSWAIGYS ANLAR+I+RDQR+IHPVSV+AKGFYGI
Sbjct: 241 KETLEKIHKEVVESAYEVISLKGYTSWAIGYSVANLARTILRDQRRIHPVSVIAKGFYGI 300

Query: 301 DGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI 350
             GDVFLSLPAQLGR GVLGVTN+HL +EE+ +LR+SAKTILEVQ+QLG+
Sbjct: 301 ADGDVFLSLPAQLGRSGVLGVTNVHLTEEEARKLRDSAKTILEVQNQLGV 350

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071545|ref|XP_002303510.1| predicted protein [Populus trichocarpa] gi|222840942|gb|EEE78489.1| predicted protein [Populus trichocarpa]

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 296/350 (84%), Positives = 321/350 (91%)

Query: 1   MHKTPSGSSLGPGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQD 60
           M K+ S SSLGPGGLDL+  FFKPI + +PPSPTKR TKISVIG GNVGMAIAQTILTQD
Sbjct: 1   MQKSASASSLGPGGLDLSDMFFKPIQNTSPPSPTKRQTKISVIGAGNVGMAIAQTILTQD 60

Query: 61  FVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAG 120
             +E+ALVDA+ +KLRGEMLDLQHAAAFLPRTKI+AS DY VT GSDLCIVTAGARQIAG
Sbjct: 61  LADEIALVDAQPEKLRGEMLDLQHAAAFLPRTKIIASTDYLVTVGSDLCIVTAGARQIAG 120

Query: 121 ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGT 180
           ESRLNLLQRN++LF+ IIPPL KYSP  IL+IV+NPVD+LTYVAWKLSG PSNRV+GSGT
Sbjct: 121 ESRLNLLQRNVALFRGIIPPLAKYSPGTILMIVSNPVDVLTYVAWKLSGFPSNRVVGSGT 180

Query: 181 NLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYE 240
           NLDSSRFRFL+ADHLDVNAQDVQA I+GEHGDSSVALWSSISVGGVP+LSFLEKQQI YE
Sbjct: 181 NLDSSRFRFLIADHLDVNAQDVQASIIGEHGDSSVALWSSISVGGVPVLSFLEKQQIPYE 240

Query: 241 KETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGI 300
           KETLE IHK VVDSAYEVISLKGYTSWAIGYSAANLARSI+RDQRKIHPVSVLAKGFYGI
Sbjct: 241 KETLEGIHKAVVDSAYEVISLKGYTSWAIGYSAANLARSILRDQRKIHPVSVLAKGFYGI 300

Query: 301 DGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI 350
           D GDVFLSLPAQLGRGGVLGVTN+HL  EE+ RLR SA+TIL+VQSQLG+
Sbjct: 301 DDGDVFLSLPAQLGRGGVLGVTNVHLTDEEAQRLRKSAQTILKVQSQLGL 350

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1620970|emb|CAA70100.1| L-lactate dehydrogenase [Solanum lycopersicum] gi|1806117|emb|CAA71611.1| L-lactate dehydrogenase [Solanum lycopersicum]

 Score =  617 bits (1590), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 301/350 (86%), Positives = 326/350 (93%)

Query: 1   MHKTPSGSSLGPGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQD 60
           M  + S SSLGPGGLDLTQ FFK I++AAPPSPTKRHTKISVIG GNVGMAIAQTILTQD
Sbjct: 1   MQNSSSSSSLGPGGLDLTQAFFKSISNAAPPSPTKRHTKISVIGVGNVGMAIAQTILTQD 60

Query: 61  FVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAG 120
            V+ELALVDAK+DKLRGEMLDLQHAAAFLPRTKI AS+DY+VTAGSDLCIVTAGARQ  G
Sbjct: 61  LVDELALVDAKSDKLRGEMLDLQHAAAFLPRTKIHASIDYSVTAGSDLCIVTAGARQNPG 120

Query: 121 ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGT 180
           ESRLNLLQRN++LF++IIPPLVKYSP+  LL+V+NPVD+LTYVAWKLSG P+NRVIGSGT
Sbjct: 121 ESRLNLLQRNMALFRSIIPPLVKYSPETTLLVVSNPVDVLTYVAWKLSGFPANRVIGSGT 180

Query: 181 NLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYE 240
           NLDSSRFRFL+ADHLDVNAQDVQAYIVGEHGDSSVALWS ISVGGVP+LSFLE+QQIA E
Sbjct: 181 NLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSGISVGGVPVLSFLERQQIALE 240

Query: 241 KETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGI 300
           KETLE IH+EVV SAYEVISLKGYTSWAIGYS ANLAR+I+RDQR+IHPVSVLAKGFYGI
Sbjct: 241 KETLEKIHQEVVHSAYEVISLKGYTSWAIGYSVANLARTILRDQRRIHPVSVLAKGFYGI 300

Query: 301 DGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI 350
           DGGDVFLSLPAQLGR GVLGVTN+HL  EE  +LRNSAKTILEVQSQLGI
Sbjct: 301 DGGDVFLSLPAQLGRSGVLGVTNVHLTDEEIEQLRNSAKTILEVQSQLGI 350

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563314|ref|XP_003549909.1| PREDICTED: L-lactate dehydrogenase A-like [Glycine max]

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 296/350 (84%), Positives = 320/350 (91%), Gaps = 1/350 (0%)

Query: 1   MHKTPSGSSLGPGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQD 60
           MHK+ SGS+LGPGGLDLTQ FF+PI +AAPPSPTKRH KISVIG GNVGMAIAQTILTQD
Sbjct: 1   MHKSASGSTLGPGGLDLTQAFFRPITNAAPPSPTKRHNKISVIGAGNVGMAIAQTILTQD 60

Query: 61  FVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAG 120
             +EL LVD   DKLRGEMLDLQHAAAFLPRTKI +S D +VTAGSDLCIVTAGARQI G
Sbjct: 61  LTDELVLVDTNTDKLRGEMLDLQHAAAFLPRTKINSSADSSVTAGSDLCIVTAGARQIVG 120

Query: 121 ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGT 180
           ESRLNLLQRNLSLF+AIIPPLV+YSPD ILLIV+NPVDILTYVAWKLSG PSNRVIGSGT
Sbjct: 121 ESRLNLLQRNLSLFRAIIPPLVRYSPDTILLIVSNPVDILTYVAWKLSGFPSNRVIGSGT 180

Query: 181 NLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYE 240
           NLDSSRFRFL+ADHLD+NAQDVQAYIVGEHGDSSVALWSSIS+GGVP+LSFLE Q I YE
Sbjct: 181 NLDSSRFRFLIADHLDLNAQDVQAYIVGEHGDSSVALWSSISIGGVPVLSFLESQHIGYE 240

Query: 241 KETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGI 300
           KETLE+IHK V+D AYEVI LKGYTSWAIGYS ANLARS IRDQRKIHPVSVLAKGFYGI
Sbjct: 241 KETLENIHKSVIDGAYEVIRLKGYTSWAIGYSVANLARSFIRDQRKIHPVSVLAKGFYGI 300

Query: 301 DGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI 350
           D G+VFLSLPA +GRGGVL VTN+HLN+EE+ RL++SAKTI EVQ+QLGI
Sbjct: 301 D-GEVFLSLPALVGRGGVLSVTNVHLNEEETQRLKDSAKTIHEVQTQLGI 349

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
TAIR|locus:2130764	353	AT4G17260 [Arabidopsis thalian	0.957	0.949	0.767	4.1e-136
ZFIN|ZDB-GENE-040718-176	388	ldhbb "lactate dehydrogenase B	0.602	0.543	0.518	2.1e-86
MGI|MGI:96759	332	Ldha "lactate dehydrogenase A"	0.882	0.930	0.548	3e-85
ZFIN|ZDB-GENE-991026-5	333	ldha "lactate dehydrogenase A4	0.945	0.993	0.515	1.7e-84
RGD|2996	332	Ldha "lactate dehydrogenase A"	0.882	0.930	0.541	4.4e-84
UNIPROTKB|F1PVW0	361	LDHA "L-lactate dehydrogenase"	0.882	0.855	0.535	1.9e-83
UNIPROTKB|P00339	332	LDHA "L-lactate dehydrogenase	0.888	0.936	0.525	3.9e-83
UNIPROTKB|P00340	332	LDHA "L-lactate dehydrogenase	0.888	0.936	0.532	1e-82
UNIPROTKB|P19858	332	LDHA "L-lactate dehydrogenase	0.882	0.930	0.529	1.7e-82
UNIPROTKB|P00338	332	LDHA "L-lactate dehydrogenase	0.882	0.930	0.535	1.7e-82

TAIR|locus:2130764 AT4G17260 [Arabidopsis thaliana (taxid:3702)]

 Score = 1333 (474.3 bits), Expect = 4.1e-136, P = 4.1e-136
 Identities = 257/335 (76%), Positives = 289/335 (86%)

Query:    16 DLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKL 75
             DLT  FFKPI+++ P  P+ R TK+SV+G GNVGMAIAQTILTQD  +E+ALVDAK DKL
Sbjct:    19 DLTSAFFKPIHNSDPSLPSNRRTKVSVVGVGNVGMAIAQTILTQDLADEIALVDAKPDKL 78

Query:    76 RGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFK 135
             RGEMLDLQHAAAFLPRTKI ASVDY VTAGSDLCIVTAGARQ  GE            F+
Sbjct:    79 RGEMLDLQHAAAFLPRTKITASVDYEVTAGSDLCIVTAGARQNPGESRLNLLQRNVALFR 138

Query:   136 AIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHL 195
              IIPPL K SPD IL+IV+NPVD+LTYVAWKLSG P NRV+GSGTNLDSSRFRFL+ADHL
Sbjct:   139 HIIPPLAKASPDSILIIVSNPVDVLTYVAWKLSGFPVNRVLGSGTNLDSSRFRFLIADHL 198

Query:   196 DVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSA 255
             DVNAQDVQA+IVGEHGDSSVALWSSISVGG+P+LSFLEK QIAYEK+TLE IH+ VV SA
Sbjct:   199 DVNAQDVQAFIVGEHGDSSVALWSSISVGGIPVLSFLEKNQIAYEKQTLEDIHQAVVGSA 258

Query:   256 YEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGR 315
             YEVI LKGYTSWAIGYS ANLAR+I+RDQRKIHPV+VLA+GFYG+DGGDVFLSLPA LGR
Sbjct:   259 YEVIGLKGYTSWAIGYSVANLARTILRDQRKIHPVTVLARGFYGVDGGDVFLSLPALLGR 318

Query:   316 GGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI 350
              GV+ VTN+H+  EE+ +L+ SAKTILE+QSQLG+
Sbjct:   319 NGVVAVTNVHMTDEEAEKLQKSAKTILEMQSQLGL 353

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004457 "lactate dehydrogenase activity" evidence=ISS

GO:0004459 "L-lactate dehydrogenase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

ZFIN|ZDB-GENE-040718-176 ldhbb "lactate dehydrogenase Bb" [Danio rerio (taxid:7955)]

 Score = 570 (205.7 bits), Expect = 2.1e-86, Sum P(2) = 2.1e-86
 Identities = 110/212 (51%), Positives = 148/212 (69%)

Query:   137 IIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLD 196
             IIP +VKYSP+CIL++V+NPVD+LTYV WKLSGLP +RVIGSGTNLDS+RFR+L+A+ L 
Sbjct:   175 IIPQIVKYSPNCILIVVSNPVDVLTYVTWKLSGLPKHRVIGSGTNLDSARFRYLMAERLG 234

Query:   197 VNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAY 256
             ++      +I+GEHGDSSV +WS  +V GV +           ++E  +  HK+VVDSAY
Sbjct:   235 IHPSSFNGWILGEHGDSSVPVWSGANVAGVSLQKLNPDIGKDTDRENWKETHKKVVDSAY 294

Query:   257 EVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRG 316
             EVI LKGYT+WAIG S A+L  SI+++  ++HPVS + KG YGI   +V+LSLP  L   
Sbjct:   295 EVIRLKGYTNWAIGLSVADLTESIMKNLNRVHPVSTMVKGMYGISD-EVYLSLPCVLNSA 353

Query:   317 GVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348
             GV  V N+ L  +E  +L+ SA  +  +Q  L
Sbjct:   354 GVGSVVNMTLTVDEVSQLKKSADMLWHIQRDL 385

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004459 "L-lactate dehydrogenase activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:96759 Ldha "lactate dehydrogenase A" [Mus musculus (taxid:10090)]

 Score = 853 (305.3 bits), Expect = 3.0e-85, P = 3.0e-85
 Identities = 170/310 (54%), Positives = 218/310 (70%)

Query:    39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
             KI+V+G G VGMA A +IL +D  +ELALVD   DKL+GEM+DLQH + FL   KI++S 
Sbjct:    22 KITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLKTPKIVSSK 81

Query:    99 DYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVD 158
             DY VTA S L I+TAGARQ  GE            FK IIP +VKYSP C LLIV+NPVD
Sbjct:    82 DYCVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPHCKLLIVSNPVD 141

Query:   159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
             ILTYVAWK+SG P NRVIGSG NLDS+RFR+L+ + L V+A     +++GEHGDSSV +W
Sbjct:   142 ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWVLGEHGDSSVPVW 201

Query:   219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLAR 278
             S ++V GV + S   +     +KE  + +HK+VVDSAYEVI LKGYTSWAIG S A+LA 
Sbjct:   202 SGVNVAGVSLKSLNPELGTDADKEQWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAE 261

Query:   279 SIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA 338
             SI+++ R++HP+S + KG YGI+  DVFLS+P  LG+ G+  V  + L  EE  RL+ SA
Sbjct:   262 SIMKNLRRVHPISTMIKGLYGINE-DVFLSVPCILGQNGISDVVKVTLTPEEEARLKKSA 320

Query:   339 KTILEVQSQL 348
              T+  +Q +L
Sbjct:   321 DTLWGIQKEL 330

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004457 "lactate dehydrogenase activity" evidence=ISO

GO:0004459 "L-lactate dehydrogenase activity" evidence=ISO;IMP;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005929 "cilium" evidence=IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006089 "lactate metabolic process" evidence=ISO

GO:0006096 "glycolysis" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0019674 "NAD metabolic process" evidence=ISO

GO:0019900 "kinase binding" evidence=ISO

GO:0031668 "cellular response to extracellular stimulus" evidence=IDA

GO:0042802 "identical protein binding" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0051287 "NAD binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO;IMP;IDA

ZFIN|ZDB-GENE-991026-5 ldha "lactate dehydrogenase A4" [Danio rerio (taxid:7955)]

 Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
 Identities = 171/332 (51%), Positives = 223/332 (67%)

Query:    17 LTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR 76
             +  T  K I H +   P     K++V+G G VGMA A +IL +D  +ELALVD   DKL+
Sbjct:     1 MASTKEKLIAHVSKEQPAGPTNKVTVVGVGMVGMAAAVSILLKDLTDELALVDVMEDKLK 60

Query:    77 GEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKA 136
             GE +DLQH + FL   KI+A  DY+VTA S + +VTAGARQ  GE            FK 
Sbjct:    61 GEAMDLQHGSLFLKTHKIVADKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKF 120

Query:   137 IIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLD 196
             IIP ++KYSP+CILL+V+NPVDILTYVAWKLSGLP NRVIGSGTNLDS+RFR+L+ + L 
Sbjct:   121 IIPNIIKYSPNCILLVVSNPVDILTYVAWKLSGLPRNRVIGSGTNLDSARFRYLMGEKLG 180

Query:   197 VNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAY 256
             ++      ++VGEHGDSSV +WS ++V GV + +         +KE  +S+HK VVDSAY
Sbjct:   181 IHPSSCHGWVVGEHGDSSVPVWSGVNVAGVSLQALNPDLGTDKDKEDWKSVHKMVVDSAY 240

Query:   257 EVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRG 316
             EVI LKGYTSWAIG S A+L  SI+++  K HPVS L KG +G++  +VFLS+P  LG  
Sbjct:   241 EVIKLKGYTSWAIGMSVADLCESILKNMHKCHPVSTLVKGMHGVNE-EVFLSVPCILGNN 299

Query:   317 GVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348
             G+  V ++ L  EE  +L  SA+T+  VQ +L
Sbjct:   300 GLTDVVHMTLKPEEEKQLVKSAETLWGVQKEL 331

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004459 "L-lactate dehydrogenase activity" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IDA

RGD|2996 Ldha "lactate dehydrogenase A" [Rattus norvegicus (taxid:10116)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 168/310 (54%), Positives = 217/310 (70%)

Query:    39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
             KI+V+G G VGMA A +IL +D  +ELALVD   DKL+GEM+DLQH + FL   KI++S 
Sbjct:    22 KITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSK 81

Query:    99 DYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVD 158
             DY+VTA S L I+TAGARQ  GE            FK IIP +VKYSP C LLIV+NPVD
Sbjct:    82 DYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVD 141

Query:   159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
             ILTYVAWK+SG P NRVIGSG NLDS+RFR+L+ + L V+      +++GEHGDSSV +W
Sbjct:   142 ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVW 201

Query:   219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLAR 278
             S ++V GV + S   +     +KE  + +HK+VVDSAYEVI LKGYTSWAIG S A+LA 
Sbjct:   202 SGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAE 261

Query:   279 SIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA 338
             SI+++ R++HP+S + KG YGI   DVFLS+P  LG+ G+  V  + L  +E  RL+ SA
Sbjct:   262 SIMKNLRRVHPISTMIKGLYGIKE-DVFLSVPCILGQNGISDVVKVTLTPDEEARLKKSA 320

Query:   339 KTILEVQSQL 348
              T+  +Q +L
Sbjct:   321 DTLWGIQKEL 330

GO:0001666 "response to hypoxia" evidence=IEP

GO:0004457 "lactate dehydrogenase activity" evidence=IDA

GO:0004459 "L-lactate dehydrogenase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0005929 "cilium" evidence=ISO

GO:0006089 "lactate metabolic process" evidence=IDA

GO:0006096 "glycolysis" evidence=IEA

GO:0007584 "response to nutrient" evidence=IEP

GO:0009749 "response to glucose stimulus" evidence=IEP

GO:0014070 "response to organic cyclic compound" evidence=IEP

GO:0019674 "NAD metabolic process" evidence=IDA

GO:0019900 "kinase binding" evidence=IPI

GO:0031668 "cellular response to extracellular stimulus" evidence=ISO

GO:0042493 "response to drug" evidence=IEP

GO:0042542 "response to hydrogen peroxide" evidence=IEP

GO:0042802 "identical protein binding" evidence=IDA

GO:0043065 "positive regulation of apoptotic process" evidence=IDA

GO:0043627 "response to estrogen stimulus" evidence=IEP

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0048569 "post-embryonic organ development" evidence=IEP

GO:0051287 "NAD binding" evidence=IDA

GO:0051591 "response to cAMP" evidence=IEP

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|F1PVW0 LDHA "L-lactate dehydrogenase" [Canis lupus familiaris (taxid:9615)]

 Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
 Identities = 166/310 (53%), Positives = 215/310 (69%)

Query:    39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
             KI+V+G G VGMA A +IL +D  +ELALVD   DKL+GEM+DLQH + FL   KI++  
Sbjct:    51 KITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSGK 110

Query:    99 DYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVD 158
             DY VTA S L I+TAGARQ  GE            FK IIP +VKYSP+C LL+V+NPVD
Sbjct:   111 DYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNPVD 170

Query:   159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
             ILTYVAWK+SG P NRVIGSG NLDS+RFR+L+ + L V+      +++GEHGDSSV +W
Sbjct:   171 ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVW 230

Query:   219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLAR 278
             S ++V GV + +         +KE  + +HK+VVDSAYEVI LKGYTSWAIG S A+LA 
Sbjct:   231 SGVNVAGVSLKNLHPDLGTDADKEQWKQVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAE 290

Query:   279 SIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA 338
             SI+++ R++HP+S + KG YGI   DVFLS+P  LG+ G+  V  + L  EE  RL+ SA
Sbjct:   291 SIMKNLRRVHPISTMIKGLYGIKD-DVFLSVPCILGQNGISDVVKVTLTPEEEARLKKSA 349

Query:   339 KTILEVQSQL 348
              T+  +Q +L
Sbjct:   350 DTLWGIQKEL 359

GO:0004459 "L-lactate dehydrogenase activity" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P00339 LDHA "L-lactate dehydrogenase A chain" [Sus scrofa (taxid:9823)]

 Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
 Identities = 164/312 (52%), Positives = 217/312 (69%)

Query:    37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
             H KI+V+G G VGMA A +IL ++  +E+ALVD   DKL+GEM+DLQH + FL   KI++
Sbjct:    20 HNKITVVGVGAVGMACAISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRTPKIVS 79

Query:    97 SVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANP 156
               DY VTA S L ++TAGARQ  GE            FK IIP +VKYSP+C LL+V+NP
Sbjct:    80 GKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNP 139

Query:   157 VDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVA 216
             VDILTYVAWK+SG P NRVIGSG NLDS+RFR+L+ + L V+      +I+GEHGDSSV 
Sbjct:   140 VDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWILGEHGDSSVP 199

Query:   217 LWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANL 276
             +WS ++V GV + +   +     +KE  +++HK+VVDSAYEVI LKGYTSWAIG S A+L
Sbjct:   200 VWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKQVVDSAYEVIKLKGYTSWAIGLSVADL 259

Query:   277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336
             A SI+++ R++HP+S + KG YGI   DVFLS+P  LG+ G+  V  + L  EE   L+ 
Sbjct:   260 AESIMKNLRRVHPISTMIKGLYGIKE-DVFLSVPCILGQNGISDVVKVTLTPEEEAHLKK 318

Query:   337 SAKTILEVQSQL 348
             SA T+  +Q +L
Sbjct:   319 SADTLWGIQKEL 330

GO:0031668 "cellular response to extracellular stimulus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004459 "L-lactate dehydrogenase activity" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P00340 LDHA "L-lactate dehydrogenase A chain" [Gallus gallus (taxid:9031)]

 Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
 Identities = 166/312 (53%), Positives = 213/312 (68%)

Query:    37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
             H KISV+G G VGMA A +IL +D  +EL LVD   DKL+GEMLDLQH + FL   KI++
Sbjct:    20 HNKISVVGVGAVGMACAISILMKDLADELTLVDVVEDKLKGEMLDLQHGSLFLKTPKIIS 79

Query:    97 SVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANP 156
               DY+VTA S L IVTAGARQ  GE            FK IIP +VKYSPDC LLIV+NP
Sbjct:    80 GKDYSVTAHSKLVIVTAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPDCKLLIVSNP 139

Query:   157 VDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVA 216
             VDILTYVAWK+SG P +RVIGSG NLDS+RFR L+ + L ++      +IVGEHGDSSV 
Sbjct:   140 VDILTYVAWKISGFPKHRVIGSGCNLDSARFRHLMGERLGIHPLSCHGWIVGEHGDSSVP 199

Query:   217 LWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANL 276
             +WS ++V GV + +         +KE  + +HK+VVDSAYEVI LKGYTSWAIG S A+L
Sbjct:   200 VWSGVNVAGVSLKALHPDMGTDADKEHWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVADL 259

Query:   277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336
             A +I+++ R++HP+S   KG +GI   DVFLS+P  LG  G+  V  + L  +E  +++ 
Sbjct:   260 AETIMKNLRRVHPISTAVKGMHGIKD-DVFLSVPCVLGSSGITDVVKMILKPDEEEKIKK 318

Query:   337 SAKTILEVQSQL 348
             SA T+  +Q +L
Sbjct:   319 SADTLWGIQKEL 330

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0004459 "L-lactate dehydrogenase activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0006090 "pyruvate metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|P19858 LDHA "L-lactate dehydrogenase A chain" [Bos taurus (taxid:9913)]

 Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
 Identities = 164/310 (52%), Positives = 216/310 (69%)

Query:    39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
             KI+++G G VGMA A +IL +D  +E+ALVD   DKL+GEM+DLQH + FL   KI++  
Sbjct:    22 KITIVGVGAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLRTPKIVSGK 81

Query:    99 DYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVD 158
             DY VTA S L I+TAGARQ  GE            FK IIP +VKYSP+C LL+V+NPVD
Sbjct:    82 DYNVTANSRLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNPVD 141

Query:   159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
             ILTYVAWK+SG P NRVIGSG NLDS+RFR+L+ + L V+      +I+GEHGDSSV +W
Sbjct:   142 ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWILGEHGDSSVPVW 201

Query:   219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLAR 278
             S ++V GV + +   +     +KE  +++HK+VVDSAYEVI LKGYTSWAIG S A+LA 
Sbjct:   202 SGVNVAGVSLKNLHPELGTDADKEQWKAVHKQVVDSAYEVIKLKGYTSWAIGLSVADLAE 261

Query:   279 SIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA 338
             SI+++ R++HP+S + KG YGI   DVFLS+P  LG+ G+  V  + L  EE   L+ SA
Sbjct:   262 SIMKNLRRVHPISTMIKGLYGIKE-DVFLSVPCILGQNGISDVVKVTLTHEEEACLKKSA 320

Query:   339 KTILEVQSQL 348
              T+  +Q +L
Sbjct:   321 DTLWGIQKEL 330

GO:0031668 "cellular response to extracellular stimulus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0004459 "L-lactate dehydrogenase activity" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P00338 LDHA "L-lactate dehydrogenase A chain" [Homo sapiens (taxid:9606)]

 Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
 Identities = 166/310 (53%), Positives = 215/310 (69%)

Query:    39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
             KI+V+G G VGMA A +IL +D  +ELALVD   DKL+GEM+DLQH + FL   KI++  
Sbjct:    22 KITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPKIVSGK 81

Query:    99 DYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVD 158
             DY VTA S L I+TAGARQ  GE            FK IIP +VKYSP+C LLIV+NPVD
Sbjct:    82 DYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPVD 141

Query:   159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
             ILTYVAWK+SG P NRVIGSG NLDS+RFR+L+ + L V+      +++GEHGDSSV +W
Sbjct:   142 ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVW 201

Query:   219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLAR 278
             S ++V GV + +         +KE  + +HK+VV+SAYEVI LKGYTSWAIG S A+LA 
Sbjct:   202 SGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADLAE 261

Query:   279 SIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA 338
             SI+++ R++HPVS + KG YGI   DVFLS+P  LG+ G+  +  + L  EE  RL+ SA
Sbjct:   262 SIMKNLRRVHPVSTMIKGLYGIKD-DVFLSVPCILGQNGISDLVKVTLTSEEEARLKKSA 320

Query:   339 KTILEVQSQL 348
              T+  +Q +L
Sbjct:   321 DTLWGIQKEL 330

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0031668 "cellular response to extracellular stimulus" evidence=IEA

GO:0004459 "L-lactate dehydrogenase activity" evidence=NAS

GO:0006096 "glycolysis" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0006090 "pyruvate metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O93544	LDHA_DISMA	1, ., 1, ., 1, ., 2, 7	0.5429	0.9257	0.9788	N/A	no
P13491	LDHA_RABIT	1, ., 1, ., 1, ., 2, 7	0.5576	0.8885	0.9367	yes	no
Q9PVK5	LDHA_DANRE	1, ., 1, ., 1, ., 2, 7	0.5391	0.9457	0.9939	yes	no
Q4R816	LDH6B_MACFA	1, ., 1, ., 1, ., 2, 7	0.5222	0.8942	0.8215	N/A	no
P06151	LDHA_MOUSE	1, ., 1, ., 1, ., 2, 7	0.5705	0.8885	0.9367	yes	no
Q4R5B6	LDHB_MACFA	1, ., 1, ., 1, ., 2, 7	0.5180	0.9371	0.9820	N/A	no
P19858	LDHA_BOVIN	1, ., 1, ., 1, ., 2, 7	0.5512	0.8885	0.9367	yes	no
Q9PT42	LDHB_TRASC	1, ., 1, ., 1, ., 2, 7	0.5150	0.9342	0.9819	N/A	no
Q9PT43	LDHA_TRASC	1, ., 1, ., 1, ., 2, 7	0.5641	0.8885	0.9367	N/A	no
Q9PW07	LDHA_COLLI	1, ., 1, ., 1, ., 2, 7	0.5705	0.8885	0.9367	N/A	no
Q9PW06	LDHA_ALLMI	1, ., 1, ., 1, ., 2, 7	0.5576	0.8885	0.9367	N/A	no
Q9PW04	LDHB_COLLI	1, ., 1, ., 1, ., 2, 7	0.5384	0.8885	0.9339	N/A	no
P04642	LDHA_RAT	1, ., 1, ., 1, ., 2, 7	0.5641	0.8885	0.9367	yes	no
Q9W7M6	LDHA_AMBME	1, ., 1, ., 1, ., 2, 7	0.5576	0.8885	0.9339	N/A	no
P42120	LDHA_XENLA	1, ., 1, ., 1, ., 2, 7	0.5243	0.9228	0.9670	N/A	no
P00338	LDHA_HUMAN	1, ., 1, ., 1, ., 2, 7	0.5576	0.8885	0.9367	yes	no
P00339	LDHA_PIG	1, ., 1, ., 1, ., 2, 7	0.5512	0.8885	0.9367	yes	no
A0A1F3	LDHA_BOSMU	1, ., 1, ., 1, ., 2, 7	0.5480	0.8885	0.9367	N/A	no
Q9PW61	LDHA_DISEL	1, ., 1, ., 1, ., 2, 7	0.5429	0.9257	0.9788	N/A	no
Q9W7K5	LDHA_CYPCA	1, ., 1, ., 1, ., 2, 7	0.5391	0.9457	0.9939	N/A	no
Q98SL2	LDHA_CAICA	1, ., 1, ., 1, ., 2, 7	0.5608	0.8885	0.9367	N/A	no
Q98SL0	LDHA_PELSJ	1, ., 1, ., 1, ., 2, 7	0.5576	0.8885	0.9367	N/A	no
Q29563	LDHC_VULVU	1, ., 1, ., 1, ., 2, 7	0.5354	0.8828	0.9307	N/A	no
P29038	LDH_MAIZE	1, ., 1, ., 1, ., 2, 7	0.6281	0.9971	0.9858	N/A	no
P33571	LDH_PETMA	1, ., 1, ., 1, ., 2, 7	0.5493	0.9171	0.9610	N/A	no
Q9XT87	LDHA_MONDO	1, ., 1, ., 1, ., 2, 7	0.5641	0.8885	0.9367	yes	no
P00341	LDHA_SQUAC	1, ., 1, ., 1, ., 2, 7	0.5245	0.9285	0.9759	N/A	no
P00340	LDHA_CHICK	1, ., 1, ., 1, ., 2, 7	0.5576	0.8885	0.9367	yes	no
P79912	LDHA_SCEWO	1, ., 1, ., 1, ., 2, 7	0.5705	0.8885	0.9367	N/A	no
Q9W7L4	LDHB_SCEUN	1, ., 1, ., 1, ., 2, 7	0.5460	0.9257	0.9671	N/A	no
Q9W7L5	LDHA_SCEUN	1, ., 1, ., 1, ., 2, 7	0.5608	0.8885	0.9367	N/A	no
Q9W7L3	LDHA_PYTRG	1, ., 1, ., 1, ., 2, 7	0.5269	0.9428	0.9939	N/A	no
Q9BE24	LDHA_MACFA	1, ., 1, ., 1, ., 2, 7	0.5544	0.8885	0.9367	N/A	no
Q5R1W9	LDHA_PANTR	1, ., 1, ., 1, ., 2, 7	0.5576	0.8885	0.9367	yes	no
P13743	LDHB_ANAPL	1, ., 1, ., 1, ., 2, 7	0.5150	0.9342	0.9819	N/A	no
P22989	LDHB_HORVU	1, ., 1, ., 1, ., 2, 7	0.6491	0.9571	0.9738	N/A	no
P22988	LDHA_HORVU	1, ., 1, ., 1, ., 2, 7	0.6514	0.9771	0.9606	N/A	no
Q5R5F0	LDHA_PONAB	1, ., 1, ., 1, ., 2, 7	0.5576	0.8885	0.9367	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.976
4th Layer	1.1.1.27	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	350
PLN02602	350	PLN02602, PLN02602, lactate dehydrogenase	0.0
cd05293	312	cd05293, LDH_1, A subgroup of L-lactate dehydrogen	1e-174
TIGR01771	299	TIGR01771, L-LDH-NAD, L-lactate dehydrogenase	1e-153
cd05292	308	cd05292, LDH_2, A subgroup of L-lactate dehydrogen	1e-141
cd00300	300	cd00300, LDH_like, L-lactate dehydrogenase-like en	1e-126
PRK00066	315	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	1e-123
cd05291	306	cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd	1e-119
COG0039	313	COG0039, Mdh, Malate/lactate dehydrogenases [Energ	1e-113
PRK06223	307	PRK06223, PRK06223, malate dehydrogenase; Reviewed	6e-97
cd01339	300	cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik	2e-90
cd05290	307	cd05290, LDH_3, A subgroup of L-lactate dehydrogen	6e-76
cd05294	309	cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas	2e-70
cd00650	263	cd00650, LDH_MDH_like, NAD-dependent, lactate dehy	4e-68
PTZ00082	321	PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi	1e-62
TIGR01763	305	TIGR01763, MalateDH_bact, malate dehydrogenase, NA	3e-61
pfam00056	142	pfam00056, Ldh_1_N, lactate/malate dehydrogenase,	2e-58
PTZ00117	319	PTZ00117, PTZ00117, malate dehydrogenase; Provisio	3e-56
pfam02866	173	pfam02866, Ldh_1_C, lactate/malate dehydrogenase,	6e-36
PTZ00325	321	PTZ00325, PTZ00325, malate dehydrogenase; Provisio	1e-10
cd00704	323	cd00704, MDH, Malate dehydrogenase	2e-10
TIGR01756	313	TIGR01756, LDH_protist, lactate dehydrogenase	2e-09
TIGR01772	312	TIGR01772, MDH_euk_gproteo, malate dehydrogenase,	2e-08
TIGR01759	323	TIGR01759, MalateDH-SF1, malate dehydrogenase	4e-08
cd01337	310	cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma	4e-08
cd01338	322	cd01338, MDH_choloroplast_like, Chloroplast-like m	8e-07
TIGR01758	324	TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-	3e-06
PLN00135	309	PLN00135, PLN00135, malate dehydrogenase	3e-05
cd01336	325	cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an	8e-05
PRK05086	312	PRK05086, PRK05086, malate dehydrogenase; Provisio	2e-04
PLN00106	323	PLN00106, PLN00106, malate dehydrogenase	4e-04

>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase

 Score =  672 bits (1736), Expect = 0.0
 Identities = 291/350 (83%), Positives = 320/350 (91%)

Query: 1   MHKTPSGSSLGPGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQD 60
           M K+ S SSLGPGGLDL+Q FFKPI++++PPSPT+RHTK+SV+G GNVGMAIAQTILTQD
Sbjct: 1   MKKSSSASSLGPGGLDLSQAFFKPIHNSSPPSPTRRHTKVSVVGVGNVGMAIAQTILTQD 60

Query: 61  FVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAG 120
             +ELALVD   DKLRGEMLDLQHAAAFLPRTKILAS DYAVTAGSDLCIVTAGARQI G
Sbjct: 61  LADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAVTAGSDLCIVTAGARQIPG 120

Query: 121 ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGT 180
           ESRLNLLQRN++LF+ IIP L KYSPD ILLIV+NPVD+LTYVAWKLSG P+NRVIGSGT
Sbjct: 121 ESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVAWKLSGFPANRVIGSGT 180

Query: 181 NLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYE 240
           NLDSSRFRFL+ADHLDVNAQDVQAYIVGEHGDSSVALWSS+SVGGVP+LSFLEKQQIAYE
Sbjct: 181 NLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSVSVGGVPVLSFLEKQQIAYE 240

Query: 241 KETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGI 300
           KETLE IH+ VVDSAYEVI LKGYTSWAIGYS A+L RS++RDQR+IHPVSVLAKGF+GI
Sbjct: 241 KETLEEIHRAVVDSAYEVIKLKGYTSWAIGYSVASLVRSLLRDQRRIHPVSVLAKGFHGI 300

Query: 301 DGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI 350
           D GDVFLSLPAQLGR GVLGV N+HL  EE+ RLR SAKT+ EVQSQLG+
Sbjct: 301 DEGDVFLSLPAQLGRNGVLGVVNVHLTDEEAERLRKSAKTLWEVQSQLGL 350

Length = 350

>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases

 Score =  485 bits (1251), Expect = e-174
 Identities = 174/313 (55%), Positives = 221/313 (70%), Gaps = 1/313 (0%)

Query: 35  KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKI 94
           K   K++V+G G VGMA A +IL +   +EL LVD   DKL+GE +DLQH +AFL   KI
Sbjct: 1   KPRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKI 60

Query: 95  LASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154
            A  DY+VTA S + IVTAGARQ  GESRL+L+QRN+ +FK IIP LVKYSP+ ILL+V+
Sbjct: 61  EADKDYSVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS 120

Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
           NPVDI+TYVAWKLSGLP +RVIGSG NLDS+RFR+L+A+ L V    V  +I+GEHGDSS
Sbjct: 121 NPVDIMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLGVAPSSVHGWIIGEHGDSS 180

Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAA 274
           V +WS ++V GV +           + E  + +HK+VVDSAYEVI LKGYTSWAIG S A
Sbjct: 181 VPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVA 240

Query: 275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRL 334
           +L  +I+R+  ++H VS L KG +GI   +VFLSLP  LG  G+  V    L +EE  +L
Sbjct: 241 DLVDAILRNTGRVHSVSTLVKGLHGI-EDEVFLSLPCILGENGITHVIKQPLTEEEQEKL 299

Query: 335 RNSAKTILEVQSQ 347
           + SA T+ EVQ Q
Sbjct: 300 QKSADTLWEVQKQ 312

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 312

>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase

 Score =  432 bits (1114), Expect = e-153
 Identities = 145/302 (48%), Positives = 202/302 (66%), Gaps = 3/302 (0%)

Query: 42  VIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA 101
           +IG GNVG + A  +L Q   +E+ L+D   DK  GE +DLQHAA+FLP  K + S DY+
Sbjct: 1   IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYS 60

Query: 102 VTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILT 161
               +DL ++TAGA Q  GE+RL L+ RN+ + K+I+P +VK   D I L+  NPVDILT
Sbjct: 61  DCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILT 120

Query: 162 YVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSI 221
           YVAWKLSG P NRVIGSGT LD++R R+LLA+ L V+ Q V AYI+GEHGDS V +WSS 
Sbjct: 121 YVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQSVHAYIIGEHGDSEVPVWSSA 180

Query: 222 SVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSII 281
           ++GGVP+L +L+ +    + +  E I KEV D+AYE+I+ KG T + IG + A +  +I+
Sbjct: 181 TIGGVPLLDYLKAKGTETDLDLEE-IEKEVRDAAYEIINRKGATYYGIGMAVARIVEAIL 239

Query: 282 RDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTI 341
            D+ ++ PVS    G YGI   DV++ +PA LGR GV  +  + L+ EE    + SA+T+
Sbjct: 240 HDENRVLPVSAYLDGEYGI--KDVYIGVPAVLGRNGVEEIIELPLSDEEKEAFQKSAETL 297

Query: 342 LE 343
            +
Sbjct: 298 KK 299

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299

>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases

 Score =  402 bits (1036), Expect = e-141
 Identities = 150/311 (48%), Positives = 207/311 (66%), Gaps = 3/311 (0%)

Query: 38  TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS 97
            K++++G G VG   A  +L +    E+ LVD    K  GE +DL H   F+   +I A 
Sbjct: 1   MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA- 59

Query: 98  VDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV 157
            DYA   G+D+ ++TAGA Q  GE+RL+LL+RN+++FK IIP ++KY+PD ILL+V NPV
Sbjct: 60  GDYADCKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPV 119

Query: 158 DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVAL 217
           D+LTYVA+KLSGLP NRVIGSGT LD++RFR+LL +HL V+ + V AYI+GEHGDS VA+
Sbjct: 120 DVLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLGVDPRSVHAYIIGEHGDSEVAV 179

Query: 218 WSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLA 277
           WSS ++GGVP+  F +     +++E  E I +EV ++AYE+I  KG T +AIG + A + 
Sbjct: 180 WSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERKGATYYAIGLALARIV 239

Query: 278 RSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNS 337
            +I+RD+  +  VS L  G YGI   DV LSLP  +GR GV  V    L++EE   LR S
Sbjct: 240 EAILRDENSVLTVSSLLDGQYGIK--DVALSLPCIVGRSGVERVLPPPLSEEEEEALRAS 297

Query: 338 AKTILEVQSQL 348
           A+ + E    L
Sbjct: 298 AEVLKEAIESL 308

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 308

>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes

 Score =  363 bits (933), Expect = e-126
 Identities = 148/306 (48%), Positives = 210/306 (68%), Gaps = 7/306 (2%)

Query: 40  ISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD 99
           I++IG GNVG A+A  ++ +    EL LVD   +K +G+ LDL HA+AFL    I+   D
Sbjct: 1   ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD 60

Query: 100 YAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI 159
           YA  A +D+ ++TAGA +  GE+RL+L+ RN  + +++I  L KY PD I+L+V+NPVDI
Sbjct: 61  YADAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDI 120

Query: 160 LTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWS 219
           LTYVA KLSGLP NRVIGSGT LDS+RFR LLA+ LDV+ Q V AY++GEHGDS V  WS
Sbjct: 121 LTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYVLGEHGDSQVVAWS 180

Query: 220 SISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARS 279
           + +VGG+P+          + K  LE+I +EV  S YE+I LKG T++ I  + A++ +S
Sbjct: 181 TATVGGLPLEELAP-----FTKLDLEAIEEEVRTSGYEIIRLKGATNYGIATAIADIVKS 235

Query: 280 IIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAK 339
           I+ D+R++ PVS + +G YGI+  DV LS+PA +GR GV+ +  I L ++E  +L+ SA+
Sbjct: 236 ILLDERRVLPVSAVQEGQYGIE--DVALSVPAVVGREGVVRILEIPLTEDEEAKLQKSAE 293

Query: 340 TILEVQ 345
            + EV 
Sbjct: 294 ALKEVL 299

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed

 Score =  356 bits (915), Expect = e-123
 Identities = 127/317 (40%), Positives = 203/317 (64%), Gaps = 4/317 (1%)

Query: 34  TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTK 93
            K+H K+ ++G G VG + A  ++ Q   +EL ++D   +K  G+ +DL HA  F   TK
Sbjct: 3   KKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTK 62

Query: 94  ILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV 153
           I A  DY+    +DL ++TAGA Q  GE+RL+L+++NL +FK+I+  ++    D I L+ 
Sbjct: 63  IYAG-DYSDCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVA 121

Query: 154 ANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDS 213
           +NPVDILTY  WKLSG P  RVIGSGT+LDS+RFR++L++ LDV+ + V AYI+GEHGD+
Sbjct: 122 SNPVDILTYATWKLSGFPKERVIGSGTSLDSARFRYMLSEKLDVDPRSVHAYIIGEHGDT 181

Query: 214 SVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSA 273
              +WS  +V GVP+  +LE+ +  Y++E L+ I + V D+AYE+I  KG T + I  + 
Sbjct: 182 EFPVWSHANVAGVPLEEYLEENE-QYDEEDLDEIFENVRDAAYEIIEKKGATYYGIAMAL 240

Query: 274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHR 333
           A + ++I+ ++  + PVS   +G YG +  DV++ +PA + R G+  +  + LN +E  +
Sbjct: 241 ARITKAILNNENAVLPVSAYLEGQYGEE--DVYIGVPAVVNRNGIREIVELPLNDDEKQK 298

Query: 334 LRNSAKTILEVQSQLGI 350
             +SA  + E+  +  +
Sbjct: 299 FAHSADVLKEIMDEAFL 315

Length = 315

>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

 Score =  346 bits (890), Expect = e-119
 Identities = 125/309 (40%), Positives = 194/309 (62%), Gaps = 4/309 (1%)

Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
           K+ +IG G+VG + A +++ Q   +EL L+D   +K  GE LDL+ A AFLP    + + 
Sbjct: 2   KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAG 61

Query: 99  DYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD 158
           DY+    +D+ ++TAGA Q  GE+RL+LL++N  + K+I+P +     D I L+ +NPVD
Sbjct: 62  DYSDCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD 121

Query: 159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
           ++TYV  KLSGLP NRVIG+GT+LD++R R  LA+ L+V+ + V AY++GEHGDS    W
Sbjct: 122 VITYVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLNVDPRSVHAYVLGEHGDSQFVAW 181

Query: 219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLAR 278
           S+++VGG P+L  L++ +    +  L+ I ++V  + YE+I+ KG T + I  + A + +
Sbjct: 182 STVTVGGKPLLDLLKEGK--LSELDLDEIEEDVRKAGYEIINGKGATYYGIATALARIVK 239

Query: 279 SIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA 338
           +I+ D+  I PVS    G YG    DV++ +PA +GR GV  V  + L +EE  +   SA
Sbjct: 240 AILNDENAILPVSAYLDGEYGEK--DVYIGVPAIIGRNGVEEVIELDLTEEEQEKFEKSA 297

Query: 339 KTILEVQSQ 347
             I E   +
Sbjct: 298 DIIKENIKK 306

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306

>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]

 Score =  330 bits (849), Expect = e-113
 Identities = 131/307 (42%), Positives = 192/307 (62%), Gaps = 8/307 (2%)

Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKILAS 97
           K++VIG GNVG ++A  +L Q    EL L+D   +K  G  LDL HAAA L    KI   
Sbjct: 2   KVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGD 61

Query: 98  VDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV 157
            DY    G+D+ ++TAG  +  G +RL+LL++N  + K I   + KY+PD I+L+V NPV
Sbjct: 62  GDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV 121

Query: 158 DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVAL 217
           DILTY+A K SG P NRVIGSGT LDS+RFR  LA+ L V+ +DV AY++GEHGD+ V L
Sbjct: 122 DILTYIAMKFSGFPKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVIGEHGDTMVPL 181

Query: 218 WSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGY-TSWAIGYSAANL 276
           WS  +VGG P+   L++      +E LE + + V ++  E+I  KG  T +    + A +
Sbjct: 182 WSQATVGGKPLEELLKE----DTEEDLEELIERVRNAGAEIIEAKGAGTYYGPAAALARM 237

Query: 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336
             +I+RD++++ PVSV   G YG++  DV+  +PA LG+ GV  +  + L+ +E  +L  
Sbjct: 238 VEAILRDEKRVLPVSVYLDGEYGVE--DVYFGVPAVLGKNGVEEILELLLSDDEQEKLDK 295

Query: 337 SAKTILE 343
           SA+ + +
Sbjct: 296 SAEELKK 302

Length = 313

>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed

 Score =  289 bits (742), Expect = 6e-97
 Identities = 112/308 (36%), Positives = 173/308 (56%), Gaps = 15/308 (4%)

Query: 38  TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR-TKILA 96
            KIS+IG GNVG  +A  +  ++  + + L D      +G+ LD+  AA      TKI  
Sbjct: 3   KKISIIGAGNVGATLAHLLALKELGD-VVLFDIVEGVPQGKALDIAEAAPVEGFDTKITG 61

Query: 97  SVDYAVTAGSDLCIVTAG-ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN 155
           + DY   AGSD+ ++TAG  R+  G SR +LL  N  + K +   + KY+PD I+++V N
Sbjct: 62  TNDYEDIAGSDVVVITAGVPRK-PGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTN 120

Query: 156 PVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSV 215
           PVD +TYVA K SG P NRVIG    LDS+RFR  +A+ L+V+ +DV A+++G HGDS V
Sbjct: 121 PVDAMTYVALKESGFPKNRVIGMAGVLDSARFRTFIAEELNVSVKDVTAFVLGGHGDSMV 180

Query: 216 ALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYSA 273
            L    +VGG+P+   L        KE L+ I +       E++ L   G   +A   S 
Sbjct: 181 PLVRYSTVGGIPLEDLL-------SKEKLDEIVERTRKGGAEIVGLLKTGSAYYAPAASI 233

Query: 274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHR 333
           A +  +I++D++++ P S   +G YG+   DV++ +P +LG+ GV  +  + L+ EE   
Sbjct: 234 AEMVEAILKDKKRVLPCSAYLEGEYGVK--DVYVGVPVKLGKNGVEKIIELELDDEEKAA 291

Query: 334 LRNSAKTI 341
              S + +
Sbjct: 292 FDKSVEAV 299

Length = 307

>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins

 Score =  272 bits (699), Expect = 2e-90
 Identities = 106/305 (34%), Positives = 177/305 (58%), Gaps = 13/305 (4%)

Query: 40  ISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA-FLPRTKILASV 98
           IS+IG GNVG  +AQ +  ++  + + L+D      +G+ LD+  AA      TK+  + 
Sbjct: 1   ISIIGAGNVGATLAQLLALKELGD-VVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTN 59

Query: 99  DYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD 158
           DY   AGSD+ ++TAG  +  G SR +LL  N  + K +   + KY+P+ I+++V NP+D
Sbjct: 60  DYEDIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLD 119

Query: 159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
           ++TYVA+K SG P NRVIG    LDS+RFR+ +A+ L V+ +DVQA ++G HGD+ V L 
Sbjct: 120 VMTYVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGVSVKDVQAMVLGGHGDTMVPLP 179

Query: 219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTS--WAIGYSAANL 276
              +VGG+P+   + K++I       + I +   +   E+++L    S  +A   + A +
Sbjct: 180 RYSTVGGIPLTELITKEEI-------DEIVERTRNGGAEIVNLLKTGSAYYAPAAAIAEM 232

Query: 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336
             +I++D++++ P S   +G YGI   D+F+ +P  LG+ GV  +  + L  EE      
Sbjct: 233 VEAILKDKKRVLPCSAYLEGEYGIK--DIFVGVPVVLGKNGVEKIIELDLTDEEKEAFDK 290

Query: 337 SAKTI 341
           S +++
Sbjct: 291 SVESV 295

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases

 Score =  235 bits (602), Expect = 6e-76
 Identities = 112/310 (36%), Positives = 175/310 (56%), Gaps = 9/310 (2%)

Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA--FLPRTKILA 96
           K+ VIG G+VG A+    L      E+ L+D       GE LD  HA A  +   TKI A
Sbjct: 1   KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA 60

Query: 97  SVDYAVTAGSDLCIVTAGARQIAGES--RLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154
             DY   A +D+ ++TAG     G +  RL+L Q N  + + I+  + K + + +++++ 
Sbjct: 61  G-DYDDCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT 119

Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
           NP+DI  Y+A      P+N+VIG+GT LD++R R ++AD   V+ ++V  Y++GEHG  +
Sbjct: 120 NPLDIAVYIAATEFDYPANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGYVLGEHGSHA 179

Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAA 274
             +WS +++ G+P+   LE      E    + + +EVV +AY+V + KG+T+  I  SA+
Sbjct: 180 FPVWSLVNIAGLPL-DELE-ALFGKEPIDKDELLEEVVQAAYDVFNRKGWTNAGIAKSAS 237

Query: 275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRL 334
            L ++I+ D+R I PV  L  G YG+   DV LSLP  +G  G+  V  I L++ E  +L
Sbjct: 238 RLIKAILLDERSILPVCTLLSGEYGL--SDVALSLPTVIGAKGIERVLEIPLDEWELEKL 295

Query: 335 RNSAKTILEV 344
             SAK I E 
Sbjct: 296 HKSAKAIRET 305

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 307

>gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

 Score =  221 bits (566), Expect = 2e-70
 Identities = 119/308 (38%), Positives = 181/308 (58%), Gaps = 12/308 (3%)

Query: 39  KISVIG-TGNVGMAIAQTILTQDFVEELALVDAKA--DKLRGEMLDLQHA-AAFLPRTKI 94
           K+S+IG +G VG A A  +  +D V+E+ L+      +KL+G  LD+  A AA     +I
Sbjct: 2   KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI 61

Query: 95  LASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154
             S D +  AGSD+ I+TAG  +  G SRL+L ++N  + K     + +++PD  +L+V 
Sbjct: 62  KISSDLSDVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT 121

Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
           NPVD++TY A K SG   NRV G GT+LDS RF+  +A H +V+  +V   I+GEHGDS 
Sbjct: 122 NPVDVMTYKALKESGFDKNRVFGLGTHLDSLRFKVAIAKHFNVHISEVHTRIIGEHGDSM 181

Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAA 274
           V L SS S+GG+PI  F E     Y+   +E I + V ++   +ISLKG + +    + +
Sbjct: 182 VPLISSTSIGGIPIKRFPE-----YKDFDVEKIVETVKNAGQNIISLKGGSEYGPASAIS 236

Query: 275 NLARSIIRDQRKIHPVSVLAKGFYGIDG-GDVFLSLPAQLGRGGVLGVTNIHLNQEESHR 333
           NL R+I  D+R+I  VS   +G   IDG  DV + +P +LG+ G+  +  I ++ +E   
Sbjct: 237 NLVRTIANDERRILTVSTYLEG--EIDGIRDVCIGVPVKLGKNGIEEIVPIEMDDDEREA 294

Query: 334 LRNSAKTI 341
            R SA+ +
Sbjct: 295 FRKSAEIV 302

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 309

>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

 Score =  214 bits (546), Expect = 4e-68
 Identities = 110/310 (35%), Positives = 156/310 (50%), Gaps = 52/310 (16%)

Query: 40  ISVIG-TGNVGMAIAQTILTQ--DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
           I+VIG  GNVG A+A  +         EL L D   +KL+G  +DLQ A   L   K+  
Sbjct: 1   IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI 60

Query: 97  SVD-YAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN 155
           + D Y     +D+ I+TAG  +  G  RL+LL+RN+ + K I   + KYSPD  +++V+N
Sbjct: 61  TDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN 120

Query: 156 PVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSV 215
           PVDI+TY+ W+ SGLP  +VIG GT LD  RFR +LA+ L V+  DV+ YI+GEHG S V
Sbjct: 121 PVDIITYLVWRYSGLPKEKVIGLGT-LDPIRFRRILAEKLGVDPDDVKVYILGEHGGSQV 179

Query: 216 ALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAAN 275
             WS++                                               I  S A+
Sbjct: 180 PDWSTVR----------------------------------------------IATSIAD 193

Query: 276 LARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLR 335
           L RS++ D+ +I PV V   G  GI   DV +S+P  +G+ GV     + L   E  +L+
Sbjct: 194 LIRSLLNDEGEILPVGVRNNGQIGIP-DDVVVSVPCIVGKNGVEEPIEVGLTDFELEKLQ 252

Query: 336 NSAKTILEVQ 345
            SA T+ +  
Sbjct: 253 KSADTLKKEL 262

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263

>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional

 Score =  201 bits (514), Expect = 1e-62
 Identities = 97/314 (30%), Positives = 173/314 (55%), Gaps = 13/314 (4%)

Query: 36  RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA-FLPRTKI 94
           +  KIS+IG+GN+G  +A  ++    + ++ L D   +  +G+ LD+ H+       +K+
Sbjct: 5   KRRKISLIGSGNIGGVMA-YLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKV 63

Query: 95  LASVDYAVTAGSDLCIVTAGARQIAGES-----RLNLLQRNLSLFKAIIPPLVKYSPDCI 149
           + + +Y   AGSD+ IVTAG  +  G+S     R +LL  N  +   +   + KY P+  
Sbjct: 64  IGTNNYEDIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAF 123

Query: 150 LLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGE 209
           ++++ NP+D++  +  + SGLP N+V G    LDSSR R  +A+ L VN +DV A ++G 
Sbjct: 124 VIVITNPLDVMVKLLQEHSGLPKNKVCGMAGVLDSSRLRTYIAEKLGVNPRDVHASVIGA 183

Query: 210 HGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTS--W 267
           HGD  V L   ++VGG+P+  F++K  I  E+  ++ I +   ++  E++ L G  S  +
Sbjct: 184 HGDKMVPLPRYVTVGGIPLSEFIKKGLITQEE--IDEIVERTRNTGKEIVDLLGTGSAYF 241

Query: 268 AIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLN 327
           A   +A  +A + ++D++++ P S   +G YG    D+++  PA +G  GV  +  + L 
Sbjct: 242 APAAAAIEMAEAYLKDKKRVLPCSAYLEGQYGHK--DIYMGTPAVIGANGVEKIIELDLT 299

Query: 328 QEESHRLRNSAKTI 341
            EE  +   S K +
Sbjct: 300 PEEQKKFDESIKEV 313

Length = 321

>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent

 Score =  198 bits (504), Expect = 3e-61
 Identities = 109/313 (34%), Positives = 176/313 (56%), Gaps = 13/313 (4%)

Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILAS 97
           KISVIG G VG   A   L +  + +L L+D      +G+ LD+  A+      TK+  +
Sbjct: 3   KISVIGAGFVGATTAF-RLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGT 61

Query: 98  VDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV 157
            +YA TA SD+ ++TAG  +  G SR +LL  N  + + +   ++++SP+ I+++V+NP+
Sbjct: 62  NNYADTANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL 121

Query: 158 DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVAL 217
           D +TYVAW+ SG P  RVIG    LDS+RFR  +A  L V+ QDV A ++G HGD+ V L
Sbjct: 122 DAMTYVAWQKSGFPKERVIGQAGVLDSARFRTFIAMELGVSVQDVTACVLGGHGDAMVPL 181

Query: 218 WSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYSAAN 275
               +V G+P+   +  ++IA   E +E   K       E+++L  +G   +A   S   
Sbjct: 182 VRYSTVAGIPVADLISAERIA---EIVERTRK----GGGEIVNLLKQGSAYYAPAASVVE 234

Query: 276 LARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLR 335
           +  +I++D++++ P +    G YGIDG  +++ +P  LG+ GV  +  + L+Q E   L 
Sbjct: 235 MVEAILKDRKRVLPCAAYLDGQYGIDG--IYVGVPVILGKNGVEHIYELKLDQSELALLN 292

Query: 336 NSAKTILEVQSQL 348
            SAK + E    L
Sbjct: 293 KSAKIVDENCKML 305

This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305

>gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain

 Score =  185 bits (472), Expect = 2e-58
 Identities = 65/142 (45%), Positives = 91/142 (64%), Gaps = 1/142 (0%)

Query: 38  TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
            K++V+G  G VG ++A  +  Q   +EL LVD   DK  G  +DL H + FL    I+ 
Sbjct: 1   VKVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVG 60

Query: 97  SVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP 156
             DY     +D+ ++TAG  +  G +RL+LL RN  +FK I+P + K +PD I+L+V+NP
Sbjct: 61  GDDYEALKDADVVVITAGVPRKPGMTRLDLLNRNAGIFKDIVPAIAKSAPDAIVLVVSNP 120

Query: 157 VDILTYVAWKLSGLPSNRVIGS 178
           VDILTY+AWK+SGLP  RVIGS
Sbjct: 121 VDILTYIAWKVSGLPPERVIGS 142

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142

>gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional

 Score =  185 bits (471), Expect = 3e-56
 Identities = 94/313 (30%), Positives = 165/313 (52%), Gaps = 8/313 (2%)

Query: 34  TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRT 92
             +  KIS+IG G +G  +A  IL ++ + ++ L D      +G+ LDL+H +  +    
Sbjct: 2   VVKRKKISMIGAGQIGSTVALLILQKN-LGDVVLYDVIKGVPQGKALDLKHFSTLVGSNI 60

Query: 93  KILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLI 152
            IL + +Y     SD+ ++TAG ++    +R +LL  N  + K++   + KY P+  ++ 
Sbjct: 61  NILGTNNYEDIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVIC 120

Query: 153 VANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
           V NP+D +  V  + SG+PSN++ G    LDSSRFR  LA+ L V+  DV A ++G HGD
Sbjct: 121 VTNPLDCMVKVFQEKSGIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVIGGHGD 180

Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIG 270
             V L    +V G+P+  F++K  I   ++ +  I K+  +   E++ L  KG   +A  
Sbjct: 181 LMVPLPRYCTVNGIPLSDFVKKGAIT--EKEINEIIKKTRNMGGEIVKLLKKGSAFFAPA 238

Query: 271 YSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEE 330
            +   +  + ++D++++   SV   G Y     ++F+ +P  +G  G+  V  + LN EE
Sbjct: 239 AAIVAMIEAYLKDEKRVLVCSVYLNGQYNCK--NLFVGVPVVIGGKGIEKVIELELNAEE 296

Query: 331 SHRLRNSAKTILE 343
                 S ++I E
Sbjct: 297 KELFDKSIESIQE 309

Length = 319

>gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain

 Score =  128 bits (323), Expect = 6e-36
 Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 4/166 (2%)

Query: 180 TNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAY 239
           T LD++R R  LA+   V+ + V  Y++GEH  +    WS   V  +P++S   K+ +  
Sbjct: 1   TTLDTARARTFLAEKFGVDPRSVNVYVIGEHSGTQFPDWSHAKVTIIPLIS-QVKENLKD 59

Query: 240 EKETLESIHKEVVDSAYEVISLK-GYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFY 298
               LE + + V ++ YEVI  K G T++++ Y+AA +A++I+R    +  V V   G+Y
Sbjct: 60  TDWELEELIERVQNAGYEVIEAKAGSTTYSMAYAAARIAKAILRGTGGVLSVGVYLDGYY 119

Query: 299 GIDGGDVFLSLPAQLGRGGVLGVTNI-HLNQEESHRLRNSAKTILE 343
           G    D++ S+P  LG+ GV  V  I  LN  E  +L  SA  + +
Sbjct: 120 GSP-DDIYFSVPVVLGKDGVEKVVEILPLNDFEREKLEKSAAELKK 164

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173

>gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 74/300 (24%), Positives = 124/300 (41%), Gaps = 33/300 (11%)

Query: 32  SPTKRHTKISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP 90
               +  K++V+G  G +G  ++  +     V EL+L D       G   DL H      
Sbjct: 3   PSALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVG--APGVAADLSHIDTPAK 60

Query: 91  RTKILASVDYAVTA-GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCI 149
            T       +     G+DL ++ AG  +  G +R +L   N  + + ++  +   +P  I
Sbjct: 61  VTGYADGELWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAI 120

Query: 150 LLIVANPVDILTYVAW----KLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAY 205
           + IV+NPV+    +A     K       ++ G  T LD  R R  +A+ L +N  DV   
Sbjct: 121 VGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGV-TTLDVVRARKFVAEALGMNPYDVNVP 179

Query: 206 IVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYE--KETLESIHKEVVDSAYEVISLK- 262
           +VG H   ++          VP+LS     Q      +E +E I   V     EV+  K 
Sbjct: 180 VVGGHSGVTI----------VPLLS-----QTGLSLPEEQVEQITHRVQVGGDEVVKAKE 224

Query: 263 --GYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGD--VFLSLPAQLGRGGV 318
             G  + ++ Y+AA  + S+++  R      ++   F   D      F S P +LG+ GV
Sbjct: 225 GAGSATLSMAYAAAEWSTSVLKALRG--DKGIVECAFVESDMRPECPFFSSPVELGKEGV 282

Length = 321

>gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 63/246 (25%), Positives = 106/246 (43%), Gaps = 15/246 (6%)

Query: 107 DLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILTYVAW 165
           D+ I+     +  G  R +LL++N  +FK     L K   P   +L+V NP +    +A 
Sbjct: 78  DVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIAL 137

Query: 166 KLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIV-GEHGDSSVALWSSISVG 224
           K +     +   + T LD +R +  +A  L V   DV+  I+ G H ++ V   S+  V 
Sbjct: 138 KNAPNLPPKNFTALTRLDHNRAKAQVARKLGVRVSDVKNVIIWGNHSNTQVPDLSNAVVY 197

Query: 225 GVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRD- 283
           G     ++    +  E+   +   K V      +I  +G +S A   SAA      ++D 
Sbjct: 198 GPGGTEWVL--DLLDEEWLNDEFVKTVQKRGAAIIKKRGASSAA---SAAKAIADHVKDW 252

Query: 284 -----QRKIHPVSVLAKG-FYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNS 337
                  +I  + V + G  YGI  G VF S P     GG   V ++ LN     +L+ +
Sbjct: 253 LFGTPPGEIVSMGVYSPGNPYGIPPGIVF-SFPCTCKGGGWHVVEDLKLNDWLREKLKAT 311

Query: 338 AKTILE 343
            + ++E
Sbjct: 312 EEELIE 317

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 323

>gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase

 Score = 57.6 bits (139), Expect = 2e-09
 Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 27/240 (11%)

Query: 120 GESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDILTYVAWKLSGLPSNRVIGS 178
           GE R +LL +N  +FKA    L +Y+ P   +L++ NPV+    VA   +   S     S
Sbjct: 75  GEVRADLLTKNTPIFKATGEALSEYAKPTVKVLVIGNPVNTNCLVAMLHAPKLSAENFSS 134

Query: 179 GTNLDSSRFRFLLADHLDVNAQDVQAYIV-GEHGDSSVALWSSISV--GGVPILSFLEKQ 235
              LD +R    +A  L V    +   +V G H +S VA  +       G     F E  
Sbjct: 135 LCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAESMVADLTHAEFTKNGKHQKVFDELC 194

Query: 236 QIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRK----IHPVS 291
           +   E +  E I +     A++++ ++G+T      SAA+  ++ ++  +       P  
Sbjct: 195 RDYPEPDFFEVIAQR----AWKILEMRGFT------SAASPVKASLQHMKAWLFGTRPGE 244

Query: 292 VLAKGF-------YGIDGGDVFLSLPAQLGRGG-VLGVTNIHLNQEESHRLRNSAKTILE 343
           VL+ G        YGI  G +F S P  +   G V  V N  LN     +L  + K + E
Sbjct: 245 VLSMGIPVPEGNPYGIKPGVIF-SFPCTVDEDGKVHVVENFELNPWLKTKLAQTEKDLFE 303

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. Length = 313

>gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 61/298 (20%), Positives = 128/298 (42%), Gaps = 41/298 (13%)

Query: 39  KISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH------AAAFLPR 91
           K++V+G  G +G  ++  +  Q +V EL+L D       G   DL H         F   
Sbjct: 1   KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAA--GVAADLSHIPTAASVKGFSGE 58

Query: 92  TKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILL 151
             +  ++      G+D+ ++ AG  +  G +R +L   N  + K ++  + +  P  ++L
Sbjct: 59  EGLENALK-----GADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMIL 113

Query: 152 IVANPVDILTYVAW----KLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIV 207
           ++ NPV+    +A     K      N++ G  T LD  R    +A+    +  +V   ++
Sbjct: 114 VITNPVNSTVPIAAEVLKKKGVYDPNKLFGV-TTLDIVRANTFVAELKGKDPMEVNVPVI 172

Query: 208 GEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK---GY 264
           G H   ++          +P++S     ++ + ++ LE++   + ++  EV+  K   G 
Sbjct: 173 GGHSGETI----------IPLISQCP-GKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGS 221

Query: 265 TSWAIGYSAANLARSIIR----DQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGV 318
            + ++ ++ A    S++R    ++  +    V + G         F + P  LG+ GV
Sbjct: 222 ATLSMAFAGARFVLSLVRGLKGEEGVVECAYVESDGVTEAT----FFATPLLLGKNGV 275

This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312

>gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 66/254 (25%), Positives = 105/254 (41%), Gaps = 22/254 (8%)

Query: 75  LRGEMLDLQHAA-AFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSL 133
           L G  ++L+  A   L         + A     D  ++     +  G  R +LL +N  +
Sbjct: 49  LEGVAMELEDCAFPLLAGVVATTDPEEAFK-DVDAALLVGAFPRKPGMERADLLSKNGKI 107

Query: 134 FKAIIPPLVKY-SPDCILLIVANPVDILTYVAWKLS-GLPSNRVIGSGTNLDSSRFRFLL 191
           FK     L K    D  +L+V NP +    +A K +  +P      + T LD +R ++ L
Sbjct: 108 FKEQGKALNKVAKKDVKVLVVGNPANTNALIASKNAPDIPPKNF-SAMTRLDHNRAKYQL 166

Query: 192 ADHLDVNAQDVQAYIV-GEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKE 250
           A    V   DV+  I+ G H ++ V  ++  +V G P+   + K     E E + ++ + 
Sbjct: 167 AAKAGVPVSDVKNVIIWGNHSNTQVPDFTHATVDGRPVKEVI-KDDKWLEGEFIPTVQQR 225

Query: 251 VVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHP------VSVLAKGF-YGIDGG 303
                  VI  +G +S A   SAAN A   +RD     P      + V + G  YGI  G
Sbjct: 226 ----GAAVIEARGASSAA---SAANAAIDHVRDWVTGTPEGDWVSMGVYSDGNPYGIPEG 278

Query: 304 DVFLSLPAQLGRGG 317
            +F S P      G
Sbjct: 279 IIF-SFPVTCKGDG 291

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. Length = 323

>gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases

 Score = 53.6 bits (130), Expect = 4e-08
 Identities = 69/303 (22%), Positives = 131/303 (43%), Gaps = 52/303 (17%)

Query: 39  KISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH------AAAFLPR 91
           K++V+G  G +G  ++  +     V ELAL D       G   DL H         +L  
Sbjct: 2   KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTP--GVAADLSHINTPAKVTGYLGP 59

Query: 92  TKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILL 151
            ++  ++      G+D+ ++ AG  +  G +R +L   N  + + +   + K  P  ++L
Sbjct: 60  EELKKALK-----GADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALIL 114

Query: 152 IVANPVDILTYVA---WKLSG-LPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIV 207
           I++NPV+    +A    K +G     R+ G  T LD  R    +A+ L ++   V   ++
Sbjct: 115 IISNPVNSTVPIAAEVLKKAGVYDPKRLFGV-TTLDVVRANTFVAELLGLDPAKVNVPVI 173

Query: 208 GEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK---GY 264
           G H        S +++  +P+LS   +    +++E +E++   +     EV+  K   G 
Sbjct: 174 GGH--------SGVTI--LPLLS-QCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGS 222

Query: 265 TSWAIGYSAANLARSIIRDQRKIHPVSVLAKG--------FYGIDGGDV-FLSLPAQLGR 315
            + ++ Y+ A  A S++R            KG        +   D  +  F + P +LG+
Sbjct: 223 ATLSMAYAGARFANSLLR----------GLKGEKGVIECAYVESDVTEAPFFATPVELGK 272

Query: 316 GGV 318
            GV
Sbjct: 273 NGV 275

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310

>gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases

 Score = 49.9 bits (120), Expect = 8e-07
 Identities = 70/280 (25%), Positives = 122/280 (43%), Gaps = 23/280 (8%)

Query: 75  LRGEMLDLQHAAAFLPRTKILASVD-YAVTAGSDLCI-VTAGARQIAGESRLNLLQRNLS 132
           L G  ++L+  A F    +I+ + D       +D  + V A  R   G  R +LL+ N  
Sbjct: 48  LEGVAMELEDCA-FPLLAEIVITDDPNVAFKDADWALLVGAKPRG-PGMERADLLKANGK 105

Query: 133 LFKAIIPPLVKY-SPDCILLIVANPVDILTYVAWKLS-GLPSNRVIGSGTNLDSSRFRFL 190
           +F A    L    S D  +L+V NP +    +A K +  +P +    + T LD +R +  
Sbjct: 106 IFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKNAPDIPPDN-FTAMTRLDHNRAKSQ 164

Query: 191 LADHLDVNAQDVQAYIV-GEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHK 249
           LA    V   DV+  ++ G H  +    +++ ++GG P    +  +    E E + ++ K
Sbjct: 165 LAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNATIGGKPAAEVINDRA-WLEDEFIPTVQK 223

Query: 250 EVVDSAYEVISLKGYTSWAIGYSAANLARSIIRD------QRKIHPVSVLAKGFYGIDGG 303
                   +I  +G +S A   SAAN A   +RD      +     ++V + G YGI  G
Sbjct: 224 R----GAAIIKARGASSAA---SAANAAIDHMRDWVLGTPEGDWFSMAVPSDGSYGIPEG 276

Query: 304 DVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILE 343
            +F S P +   GG   V  + ++     ++  +   +LE
Sbjct: 277 LIF-SFPVRSKGGGYEIVEGLEIDDFAREKIDATLAELLE 315

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 322

>gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 16/216 (7%)

Query: 75  LRGEMLDLQHAAAFLPRTKILASVDYAVT-AGSDLCIVTAGARQIAGESRLNLLQRNLSL 133
           L G +++L   A F     ++ + D AV     D+ I+     +  G  R +LL +N+ +
Sbjct: 45  LEGVVMELMDCA-FPLLDGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKI 103

Query: 134 FKAIIPPLVKY-SPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLA 192
           FK     L K    DC +L+V NP +    V    +     +   + T LD +R    +A
Sbjct: 104 FKEQGRALDKLAKKDCKVLVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRALAQVA 163

Query: 193 DHLDVNAQDVQAYIV-GEHGDSSVALWSSISV----GGVPILSFLEKQQIAYEKETLESI 247
           +   V   DV+  I+ G H  +     +  +V       P+     ++ I  +       
Sbjct: 164 ERAGVPVSDVKNVIIWGNHSSTQYPDVNHATVTKGGKQKPV-----REAIKDDAYLDGEF 218

Query: 248 HKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRD 283
              V      +I  +  +S     SAA  A   + D
Sbjct: 219 ITTVQQRGAAIIRARKLSSAL---SAAKAAVDQMHD 251

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography. Length = 324

>gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 16/148 (10%)

Query: 72  ADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTAGSDLCIVTAGARQIAGESRLNLLQRN 130
           A+ L G  ++L  AA  L +  ++A+ D      G ++ ++  G  +  G  R +++ +N
Sbjct: 25  AEALNGVKMELIDAAFPLLK-GVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKN 83

Query: 131 LSLFKAIIPPLVKY-SPDCILLIVANPVD----ILTYVAWKLSGLPS--NRVIGSGTNLD 183
           +S++K+    L K+ +PDC +L+VANP +    IL   A      PS   + I   T LD
Sbjct: 84  VSIYKSQASALEKHAAPDCKVLVVANPANTNALILKEFA------PSIPEKNITCLTRLD 137

Query: 184 SSRFRFLLADHLDVNAQDVQAYIV-GEH 210
            +R    +++ L V   DV+  I+ G H
Sbjct: 138 HNRALGQISERLGVPVSDVKNVIIWGNH 165

Length = 309

>gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 68/297 (22%), Positives = 117/297 (39%), Gaps = 29/297 (9%)

Query: 64  ELALVD--AKADKLRGEMLDLQHAAAFLPRTK-ILASVDYAVT-AGSDLCIVTAGARQIA 119
            L L+D       L G +++LQ  A   P  K ++A+ D        D+ I+     +  
Sbjct: 35  ILHLLDIPPALKALEGVVMELQDCA--FPLLKSVVATTDPEEAFKDVDVAILVGAMPRKE 92

Query: 120 GESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILTYVAWKL-SGLPSNRVIG 177
           G  R +LL+ N+ +FK     L KY   +  +L+V NP +    +  K    +P      
Sbjct: 93  GMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALILLKYAPSIPK-ENFT 151

Query: 178 SGTNLDSSRFRFLLADHLDVNAQDVQAYIV-GEHGDSSVALWSSISV----GGVPILSFL 232
           + T LD +R +  +A  L V   DV+  I+ G H  +     +  +V     G P    +
Sbjct: 152 ALTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVELNGKGKPAREAV 211

Query: 233 EKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRD------QRK 286
           +    A+      S    V      VI  +  +S     SAA      + D      + +
Sbjct: 212 KDD--AWLNGEFIST---VQKRGAAVIKARKLSSAM---SAAKAICDHVHDWWFGTPEGE 263

Query: 287 IHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILE 343
              + V + G YG+  G +F S P     G    V  + ++     ++  +AK ++E
Sbjct: 264 FVSMGVYSDGSYGVPEGLIF-SFPVTCKNGKWKIVQGLSIDDFSREKIDATAKELVE 319

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 325

>gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 64/258 (24%), Positives = 118/258 (45%), Gaps = 33/258 (12%)

Query: 39  KISVIG-TGNVGMAIAQTILTQDFVE-ELALVDAKADKLRGEMLDLQHAAAFLP---RTK 93
           K++V+G  G +G A+A  + TQ     EL+L D  A    G  +DL H    +P   + K
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDI-APVTPGVAVDLSH----IPTAVKIK 56

Query: 94  ILASVDYAVT-AGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLI 152
             +  D      G+D+ +++AG  +  G  R +L   N  + K ++  + K  P   + I
Sbjct: 57  GFSGEDPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGI 116

Query: 153 VANPVDILTYVA---WKLSGL-PSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVG 208
           + NPV+    +A    K +G+   N++ G  T LD  R    +A+       +V+  ++G
Sbjct: 117 ITNPVNTTVAIAAEVLKKAGVYDKNKLFGV-TTLDVIRSETFVAELKGKQPGEVEVPVIG 175

Query: 209 EHGDSSVALWSSISVGGVPILSFLEK-QQIAYEKETLESIHKEVVDSAYEVISLK---GY 264
            H              GV IL  L +   +++ ++ +  + K + ++  EV+  K   G 
Sbjct: 176 GH-------------SGVTILPLLSQVPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGS 222

Query: 265 TSWAIGYSAANLARSIIR 282
            + ++G +AA    S++R
Sbjct: 223 ATLSMGQAAARFGLSLVR 240

Length = 312

>gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 48/188 (25%), Positives = 90/188 (47%), Gaps = 25/188 (13%)

Query: 105 GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVA 164
           G+DL I+ AG  +  G +R +L   N  + K +   + K+ P+ ++ I++NPV+    +A
Sbjct: 86  GADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIA 145

Query: 165 ---WKLSGL--PSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWS 219
               K +G+  P  ++ G  T LD  R    +A+   ++  DV   +VG H         
Sbjct: 146 AEVLKKAGVYDP-KKLFGV-TTLDVVRANTFVAEKKGLDPADVDVPVVGGH--------- 194

Query: 220 SISVGGVPILSFLE--KQQIAYEKETLESIHKEVVDSAYEVISLK---GYTSWAIGYSAA 274
                G+ IL  L     ++++  E +E++ K + +   EV+  K   G  + ++ Y+AA
Sbjct: 195 ----AGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAYAAA 250

Query: 275 NLARSIIR 282
             A + +R
Sbjct: 251 RFADACLR 258

Length = 323

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	350
PLN02602	350	lactate dehydrogenase	100.0
KOG1495	332	consensus Lactate dehydrogenase [Energy production	100.0
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	100.0
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	100.0
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	100.0
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	100.0
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	100.0
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	100.0
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	100.0
PRK05442	326	malate dehydrogenase; Provisional	100.0
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	100.0
PTZ00117	319	malate dehydrogenase; Provisional	100.0
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	100.0
PTZ00082	321	L-lactate dehydrogenase; Provisional	100.0
PLN00112	444	malate dehydrogenase (NADP); Provisional	100.0
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	100.0
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	100.0
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	100.0
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	100.0
PRK06223	307	malate dehydrogenase; Reviewed	100.0
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	100.0
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	100.0
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	100.0
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	100.0
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	100.0
PLN00135	309	malate dehydrogenase	100.0
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	100.0
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	100.0
PTZ00325	321	malate dehydrogenase; Provisional	100.0
TIGR01756	313	LDH_protist lactate dehydrogenase. This model repr	100.0
PLN00106	323	malate dehydrogenase	100.0
PRK05086	312	malate dehydrogenase; Provisional	100.0
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	100.0
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	100.0
KOG1496	332	consensus Malate dehydrogenase [Energy production	100.0
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	100.0
PRK15076	431	alpha-galactosidase; Provisional	100.0
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	100.0
PF02866	174	Ldh_1_C: lactate/malate dehydrogenase, alpha/beta	100.0
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	100.0
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	100.0
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	100.0
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	100.0
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	99.9
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	99.29
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	99.28
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.17
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	99.16
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.14
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	99.09
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	99.08
PRK11730	715	fadB multifunctional fatty acid oxidation complex	99.08
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	99.06
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.02
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	99.01
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	99.0
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.98
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.97
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.95
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.94
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.92
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.91
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.86
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.82
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.8
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.79
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.76
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.7
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.66
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.65
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.61
PF11975	232	Glyco_hydro_4C: Family 4 glycosyl hydrolase C-term	98.56
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.5
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	98.48
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.47
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.46
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.45
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	98.42
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	98.39
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.38
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	98.34
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	98.33
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.33
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.28
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.27
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.26
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	98.21
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.2
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	98.19
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	98.18
PRK07680	273	late competence protein ComER; Validated	98.09
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	98.07
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.05
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	98.04
PRK07417	279	arogenate dehydrogenase; Reviewed	98.0
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	98.0
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	98.0
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.98
PRK08507	275	prephenate dehydrogenase; Validated	97.97
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	97.92
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.9
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.9
PLN02688	266	pyrroline-5-carboxylate reductase	97.89
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.88
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.87
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.84
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.84
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.78
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.77
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	97.76
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	97.75
PRK08655	437	prephenate dehydrogenase; Provisional	97.72
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.71
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.7
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.67
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	97.67
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.66
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.66
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.65
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.63
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	97.63
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.62
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	97.61
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.6
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	97.59
PRK06545	359	prephenate dehydrogenase; Validated	97.59
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	97.58
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	97.57
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	97.57
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.56
PRK12480	330	D-lactate dehydrogenase; Provisional	97.55
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.54
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.52
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.52
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.49
PLN02166	436	dTDP-glucose 4,6-dehydratase	97.49
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	97.47
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	97.42
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	97.36
PRK08291	330	ectoine utilization protein EutC; Validated	97.34
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.33
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.32
PLN02712	667	arogenate dehydrogenase	97.31
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.31
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	97.3
PRK08618	325	ornithine cyclodeaminase; Validated	97.3
PLN02256	304	arogenate dehydrogenase	97.3
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.24
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.23
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.23
PLN02206	442	UDP-glucuronate decarboxylase	97.22
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.21
PRK15059	292	tartronate semialdehyde reductase; Provisional	97.21
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.21
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.21
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	97.2
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	97.17
PRK06407	301	ornithine cyclodeaminase; Provisional	97.14
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	97.14
PRK13304	265	L-aspartate dehydrogenase; Reviewed	97.13
PLN03209	576	translocon at the inner envelope of chloroplast su	97.13
PRK05479	330	ketol-acid reductoisomerase; Provisional	97.12
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.12
KOG0409	327	consensus Predicted dehydrogenase [General functio	97.11
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	97.1
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.1
PRK06141	314	ornithine cyclodeaminase; Validated	97.1
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.09
PRK08605	332	D-lactate dehydrogenase; Validated	97.06
PLN00203	519	glutamyl-tRNA reductase	97.05
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	97.04
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	97.03
PLN02650	351	dihydroflavonol-4-reductase	97.02
PRK07340	304	ornithine cyclodeaminase; Validated	97.01
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.01
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	96.98
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	96.96
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.96
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.96
PRK07574	385	formate dehydrogenase; Provisional	96.96
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	96.95
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	96.94
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	96.94
PLN02712	667	arogenate dehydrogenase	96.92
PRK13243	333	glyoxylate reductase; Reviewed	96.91
PRK14982	340	acyl-ACP reductase; Provisional	96.89
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.88
CHL00194	317	ycf39 Ycf39; Provisional	96.88
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.88
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.87
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	96.86
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.85
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.85
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.84
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.83
PRK06823	315	ornithine cyclodeaminase; Validated	96.83
PLN03139	386	formate dehydrogenase; Provisional	96.81
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	96.8
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	96.8
PLN02778	298	3,5-epimerase/4-reductase	96.78
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.78
PRK07589	346	ornithine cyclodeaminase; Validated	96.77
PRK10675	338	UDP-galactose-4-epimerase; Provisional	96.76
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	96.75
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.75
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.75
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.74
PLN02928	347	oxidoreductase family protein	96.72
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	96.72
PRK06046	326	alanine dehydrogenase; Validated	96.72
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.72
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.71
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.71
PRK08818	370	prephenate dehydrogenase; Provisional	96.71
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.71
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.7
PRK06199	379	ornithine cyclodeaminase; Validated	96.7
PLN02427	386	UDP-apiose/xylose synthase	96.68
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.68
COG2910	211	Putative NADH-flavin reductase [General function p	96.66
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.65
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	96.65
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.6
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	96.58
PRK08223	287	hypothetical protein; Validated	96.58
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	96.58
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	96.57
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	96.56
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	96.55
COG2344	211	AT-rich DNA-binding protein [General function pred	96.55
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.52
PLN00198	338	anthocyanidin reductase; Provisional	96.52
PRK04148	134	hypothetical protein; Provisional	96.52
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.51
PRK08340	259	glucose-1-dehydrogenase; Provisional	96.5
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	96.5
PRK06194	287	hypothetical protein; Provisional	96.48
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.47
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	96.46
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.46
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.45
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	96.45
PLN02240	352	UDP-glucose 4-epimerase	96.44
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	96.44
PLN02494	477	adenosylhomocysteinase	96.43
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	96.43
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.43
PRK07102	243	short chain dehydrogenase; Provisional	96.4
PLN02858	1378	fructose-bisphosphate aldolase	96.4
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.4
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	96.39
PLN02214	342	cinnamoyl-CoA reductase	96.38
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	96.36
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.36
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	96.36
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.35
PLN02858	1378	fructose-bisphosphate aldolase	96.35
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	96.34
PRK07814	263	short chain dehydrogenase; Provisional	96.32
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	96.31
PLN02896	353	cinnamyl-alcohol dehydrogenase	96.31
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.29
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.28
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.27
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	96.26
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.22
PLN02583	297	cinnamoyl-CoA reductase	96.22
PRK05866	293	short chain dehydrogenase; Provisional	96.22
PRK12939	250	short chain dehydrogenase; Provisional	96.21
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.21
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	96.19
PRK08643	256	acetoin reductase; Validated	96.19
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	96.19
PRK08213	259	gluconate 5-dehydrogenase; Provisional	96.18
PRK06436	303	glycerate dehydrogenase; Provisional	96.17
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	96.17
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	96.17
PRK13529	563	malate dehydrogenase; Provisional	96.16
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	96.16
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.16
PRK07326	237	short chain dehydrogenase; Provisional	96.15
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	96.14
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	96.11
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	96.09
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.08
PRK07832	272	short chain dehydrogenase; Provisional	96.08
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	96.07
PRK08267	260	short chain dehydrogenase; Provisional	96.07
PLN02695	370	GDP-D-mannose-3',5'-epimerase	96.05
PRK07411	390	hypothetical protein; Validated	96.03
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.02
PTZ00075	476	Adenosylhomocysteinase; Provisional	96.0
PRK07774	250	short chain dehydrogenase; Provisional	96.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	96.0
TIGR03693	637	ocin_ThiF_like putative thiazole-containing bacter	95.99
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	95.97
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	95.96
PRK09496	453	trkA potassium transporter peripheral membrane com	95.95
PRK12829	264	short chain dehydrogenase; Provisional	95.95
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	95.94
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.94
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.93
PRK07523	255	gluconate 5-dehydrogenase; Provisional	95.93
PRK07069	251	short chain dehydrogenase; Validated	95.93
PLN02780	320	ketoreductase/ oxidoreductase	95.93
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	95.91
PRK05867	253	short chain dehydrogenase; Provisional	95.91
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	95.91
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	95.9
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	95.89
PRK07825	273	short chain dehydrogenase; Provisional	95.87
PRK07024	257	short chain dehydrogenase; Provisional	95.86
PRK07677	252	short chain dehydrogenase; Provisional	95.86
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	95.86
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	95.85
PRK13403	335	ketol-acid reductoisomerase; Provisional	95.83
PRK06196	315	oxidoreductase; Provisional	95.83
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	95.82
PRK06949	258	short chain dehydrogenase; Provisional	95.82
PRK08339	263	short chain dehydrogenase; Provisional	95.82
PRK10538	248	malonic semialdehyde reductase; Provisional	95.81
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.8
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.8
PRK06172	253	short chain dehydrogenase; Provisional	95.79
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	95.79
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.79
PRK12828	239	short chain dehydrogenase; Provisional	95.78
PRK12367	245	short chain dehydrogenase; Provisional	95.78
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.77
PRK05650	270	short chain dehydrogenase; Provisional	95.76
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	95.76
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.75
TIGR00036	266	dapB dihydrodipicolinate reductase.	95.74
PRK06139	330	short chain dehydrogenase; Provisional	95.73
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.72
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	95.72
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	95.7
PRK06138	252	short chain dehydrogenase; Provisional	95.7
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	95.7
PTZ00317	559	NADP-dependent malic enzyme; Provisional	95.7
PRK13303	265	L-aspartate dehydrogenase; Provisional	95.68
PRK09242	257	tropinone reductase; Provisional	95.68
PRK06181	263	short chain dehydrogenase; Provisional	95.67
PRK07067	257	sorbitol dehydrogenase; Provisional	95.66
PRK07478	254	short chain dehydrogenase; Provisional	95.66
PRK07890	258	short chain dehydrogenase; Provisional	95.65
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	95.64
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	95.64
PRK05875	276	short chain dehydrogenase; Provisional	95.61
PRK08085	254	gluconate 5-dehydrogenase; Provisional	95.61
PRK05876	275	short chain dehydrogenase; Provisional	95.6
PRK07904	253	short chain dehydrogenase; Provisional	95.59
PLN03129	581	NADP-dependent malic enzyme; Provisional	95.59
PRK05855	582	short chain dehydrogenase; Validated	95.58
PLN02306	386	hydroxypyruvate reductase	95.58
PRK08251	248	short chain dehydrogenase; Provisional	95.56
PRK12827	249	short chain dehydrogenase; Provisional	95.56
PRK07060	245	short chain dehydrogenase; Provisional	95.56
TIGR02415	254	23BDH acetoin reductases. One member of this famil	95.55
PRK06182	273	short chain dehydrogenase; Validated	95.53
PRK08862	227	short chain dehydrogenase; Provisional	95.52
PRK09496	453	trkA potassium transporter peripheral membrane com	95.51
PRK06198	260	short chain dehydrogenase; Provisional	95.5
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.5
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	95.47
PLN02572	442	UDP-sulfoquinovose synthase	95.47
PRK08265	261	short chain dehydrogenase; Provisional	95.46
PRK07109	334	short chain dehydrogenase; Provisional	95.46
PRK07035	252	short chain dehydrogenase; Provisional	95.44
PRK07454	241	short chain dehydrogenase; Provisional	95.44
PRK05717	255	oxidoreductase; Validated	95.43
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	95.43
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	95.43
PRK07806	248	short chain dehydrogenase; Provisional	95.42
PRK08277	278	D-mannonate oxidoreductase; Provisional	95.41
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.37
PRK07453	322	protochlorophyllide oxidoreductase; Validated	95.36
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	95.33
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.3
PRK14851	679	hypothetical protein; Provisional	95.29
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.29
PRK06444	197	prephenate dehydrogenase; Provisional	95.27
PRK07877	722	hypothetical protein; Provisional	95.25
PRK09135	249	pteridine reductase; Provisional	95.25
PRK07062	265	short chain dehydrogenase; Provisional	95.25
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	95.24
PRK09186	256	flagellin modification protein A; Provisional	95.24
PRK06197	306	short chain dehydrogenase; Provisional	95.23
PRK05872	296	short chain dehydrogenase; Provisional	95.22
PRK08324	681	short chain dehydrogenase; Validated	95.22
PRK09072	263	short chain dehydrogenase; Provisional	95.19
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.18
PRK06125	259	short chain dehydrogenase; Provisional	95.17
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	95.16
PLN02253	280	xanthoxin dehydrogenase	95.16
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	95.15
PRK05993	277	short chain dehydrogenase; Provisional	95.12
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	95.1
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	95.09
PRK06914	280	short chain dehydrogenase; Provisional	95.09
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	95.09
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	95.09
PRK10669	558	putative cation:proton antiport protein; Provision	95.08
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	95.08
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	95.08
PRK07831	262	short chain dehydrogenase; Provisional	95.07
PRK06940	275	short chain dehydrogenase; Provisional	95.03
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.03
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	95.03
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	95.03
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	95.02
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	95.02
PRK05599	246	hypothetical protein; Provisional	95.02
PRK06180	277	short chain dehydrogenase; Provisional	95.01
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	94.99
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	94.99
PRK09291	257	short chain dehydrogenase; Provisional	94.98
PRK09134	258	short chain dehydrogenase; Provisional	94.97
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	94.95
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	94.95
PRK14852	989	hypothetical protein; Provisional	94.89
PRK06482	276	short chain dehydrogenase; Provisional	94.87
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	94.86
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.86
PRK06487	317	glycerate dehydrogenase; Provisional	94.81
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	94.78
PRK08589	272	short chain dehydrogenase; Validated	94.78
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	94.77
PRK06932	314	glycerate dehydrogenase; Provisional	94.75
PRK06153	393	hypothetical protein; Provisional	94.73
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	94.73
PRK12937	245	short chain dehydrogenase; Provisional	94.72
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.71
PRK08328	231	hypothetical protein; Provisional	94.71
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	94.7
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	94.7
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	94.68
PRK08703	239	short chain dehydrogenase; Provisional	94.64
TIGR00745	293	apbA_panE 2-dehydropantoate 2-reductase. This mode	94.63
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.63
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.6
PRK07097	265	gluconate 5-dehydrogenase; Provisional	94.59
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	94.59
PRK07074	257	short chain dehydrogenase; Provisional	94.59
PRK06101	240	short chain dehydrogenase; Provisional	94.57
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	94.57
PRK07576	264	short chain dehydrogenase; Provisional	94.53
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.52
PRK06179	270	short chain dehydrogenase; Provisional	94.5
PTZ00245	287	ubiquitin activating enzyme; Provisional	94.49
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	94.49
PRK08219	227	short chain dehydrogenase; Provisional	94.48
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	94.44
PRK06500	249	short chain dehydrogenase; Provisional	94.43
PRK08263	275	short chain dehydrogenase; Provisional	94.4
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	94.39
PRK05865	854	hypothetical protein; Provisional	94.37
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	94.36
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	94.35
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	94.3
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	94.29
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	94.29
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	94.23
PLN02686	367	cinnamoyl-CoA reductase	94.21
PRK12746	254	short chain dehydrogenase; Provisional	94.17
PRK07856	252	short chain dehydrogenase; Provisional	94.16
PRK08628	258	short chain dehydrogenase; Provisional	94.15
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	94.15
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	94.12
PRK08264	238	short chain dehydrogenase; Validated	94.11
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.08
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	94.07
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	94.07
PLN02260	668	probable rhamnose biosynthetic enzyme	94.03
PRK08300	302	acetaldehyde dehydrogenase; Validated	94.03
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	93.99
PRK06924	251	short chain dehydrogenase; Provisional	93.96
PRK12743	256	oxidoreductase; Provisional	93.94
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	93.94
PRK06701	290	short chain dehydrogenase; Provisional	93.91
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	93.91
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	93.9
PRK07201	657	short chain dehydrogenase; Provisional	93.88
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.88
PRK06128	300	oxidoreductase; Provisional	93.88
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	93.86
PRK12747	252	short chain dehydrogenase; Provisional	93.84
PRK08226	263	short chain dehydrogenase; Provisional	93.83
PRK06847	375	hypothetical protein; Provisional	93.8
PRK06124	256	gluconate 5-dehydrogenase; Provisional	93.79
PRK08163	396	salicylate hydroxylase; Provisional	93.77
PRK06753	373	hypothetical protein; Provisional	93.77
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	93.69
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	93.69
PRK06114	254	short chain dehydrogenase; Provisional	93.68
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	93.65
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	93.65
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.65
TIGR01746	367	Thioester-redct thioester reductase domain. It has	93.63
PRK08278	273	short chain dehydrogenase; Provisional	93.62

>PLN02602 lactate dehydrogenase

Probab=100.00  E-value=1.6e-74  Score=552.83  Aligned_cols=349  Identities=82%  Similarity=1.247  Sum_probs=320.0

Q ss_pred             CCCCCCCCCCCCCccchhhhhhccccCCCCCCCC-CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHH
Q 018760            1 MHKTPSGSSLGPGGLDLTQTFFKPINHAAPPSPT-KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEM   79 (350)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~   79 (350)
                      |.|..+.+++++|+.+..+-+++|+.++-. +|. ++++||+|||||+||+++++.|+..++.+||+|+|++++++++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~m~~~~~~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a   79 (350)
T PLN02602          1 MKKSSSASSLGPGGLDLSQAFFKPIHNSSP-PSPTRRHTKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEM   79 (350)
T ss_pred             Ccccccccccccchhhhhhhhhhccccccc-ccccCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHH
Confidence            567888899999999977777766655542 232 233799999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch
Q 018760           80 LDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI  159 (350)
Q Consensus        80 ~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~  159 (350)
                      +||+|+.++....++..++++++++|||+||+++|.|++||++|.|++.+|+++++++++.|+++||++|+|++|||+|+
T Consensus        80 ~DL~~~~~~~~~~~i~~~~dy~~~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv  159 (350)
T PLN02602         80 LDLQHAAAFLPRTKILASTDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDV  159 (350)
T ss_pred             HHHHhhhhcCCCCEEEeCCCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHH
Confidence            99999986554467776678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccC
Q 018760          160 LTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAY  239 (350)
Q Consensus       160 ~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~  239 (350)
                      +|+++++++|+|++||||+||.||++|+++++|+++++++++|+++||||||++++|+||+++|+|+|+.+++......+
T Consensus       160 ~t~~~~k~sg~p~~rviG~gt~LDs~R~r~~lA~~l~v~~~~V~~~ViGeHGds~vp~wS~~~i~G~pl~~~~~~~~~~~  239 (350)
T PLN02602        160 LTYVAWKLSGFPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSVSVGGVPVLSFLEKQQIAY  239 (350)
T ss_pred             HHHHHHHHhCCCHHHEEeecchHHHHHHHHHHHHHhCCCccceeeeEEecCCCceEeeeeeeeECCEEHHHHhhccCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998875432235


Q ss_pred             CHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceE
Q 018760          240 EKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVL  319 (350)
Q Consensus       240 ~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~  319 (350)
                      +++.++++.+++++++++|++.||+++|++|.++++++++|++|++.++|++++++|+||+++.++|+|+||++|++||+
T Consensus       240 ~~~~~~~i~~~v~~~g~eIi~~KG~t~~gia~a~a~ii~ail~d~~~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~  319 (350)
T PLN02602        240 EKETLEEIHRAVVDSAYEVIKLKGYTSWAIGYSVASLVRSLLRDQRRIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVL  319 (350)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhcCCCeEEEEEecccccCCCCCCcEEEEEEEEeCCeeE
Confidence            56678899999999999999999999999999999999999999999999999999999993258999999999999999


Q ss_pred             EeecCCCCHHHHHHHHHHHHHHHHHHHHhCC
Q 018760          320 GVTNIHLNQEESHRLRNSAKTILEVQSQLGI  350 (350)
Q Consensus       320 ~v~~~~L~~~E~~~l~~sa~~i~~~~~~~~~  350 (350)
                      ++.+++|+++|+++|++|++.|++.++++++
T Consensus       320 ~i~~l~L~~~E~~~l~~sa~~l~~~~~~~~~  350 (350)
T PLN02602        320 GVVNVHLTDEEAERLRKSAKTLWEVQSQLGL  350 (350)
T ss_pred             EEecCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999998864

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=1.2e-74  Score=515.28  Aligned_cols=316  Identities=58%  Similarity=0.978  Sum_probs=305.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEec
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTA  113 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~  113 (350)
                      ..+..||+|+|+|+||.+.|..++.+++.+|++|+|.+++++++.+|||+|+.+|...++|..+.||.+.+++++||+++
T Consensus        17 ~~~~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~~sa~S~lvIiTA   96 (332)
T KOG1495|consen   17 EFKHNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYSVSANSKLVIITA   96 (332)
T ss_pred             cccCceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEecCcccccCCCcEEEEec
Confidence            34477999999999999999999999999999999999999999999999999888889999999999999999999999


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHH
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLAD  193 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~  193 (350)
                      |..+++|++|++++++|+.+++.+.+.+.+|+||++++++|||+|+|||+.||.+|+|++||||.||+||++||++++++
T Consensus        97 Garq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~wKLSgfP~nRViGsGcnLDsaRFryLi~~  176 (332)
T KOG1495|consen   97 GARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVTWKLSGFPKNRVIGSGCNLDSARFRYLIGN  176 (332)
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHHHHHcCCcccceeccCcCccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHH
Q 018760          194 HLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSA  273 (350)
Q Consensus       194 ~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~  273 (350)
                      +|+++|+++++|++||||++.||.||.+.|.|.++.++.++-....++|.|+++.+++.+.+|||++.||+|+|+++.+.
T Consensus       177 ~Lg~~pss~hgwIiGEHGdSsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklKGyTswaIglsv  256 (332)
T KOG1495|consen  177 RLGVHPSSCHGWIIGEHGDSSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLKGYTSWAIGLSV  256 (332)
T ss_pred             HhCCCcccceEEEeeccCCccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence            99999999999999999999999999999999999998877655778999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHhCC
Q 018760          274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI  350 (350)
Q Consensus       274 ~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~~~  350 (350)
                      ++++++|++|++.++|+++...|.|||+ +|+|+|+||+++++|+..+...+|+++|.++|++||+.|.+.+++|++
T Consensus       257 a~l~~ail~n~~~i~~Vst~~kg~~gI~-~dVflSlPc~l~~~Gi~~vv~~~Lt~~E~akL~kSa~tl~~~q~~l~~  332 (332)
T KOG1495|consen  257 ADLAQAILRNLRRIHPVSTMVKGLYGID-DDVFLSLPCLLGANGITHVVKQKLTDEEVAKLKKSAKTLLEAQKSLGL  332 (332)
T ss_pred             HHHHHHHHhCcCceeeeeeccccccCCC-CceEEecceeecCCchhhhhcccCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999997 699999999999999999999999999999999999999999999875

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=100.00  E-value=1.2e-72  Score=525.83  Aligned_cols=305  Identities=43%  Similarity=0.724  Sum_probs=288.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEEEEecCCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiVIi~~g~~  116 (350)
                      +||+|||||.||+++|+.|+..++..|++|+|++++++++.++||+|+.++. ...++..+.++++++|||+||+++|.|
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p   80 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP   80 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCC
Confidence            5999999999999999999888887799999999999999999999998654 345666545689999999999999999


Q ss_pred             cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcC
Q 018760          117 QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLD  196 (350)
Q Consensus       117 ~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~  196 (350)
                      |+|||+|+||+..|++|+++++++|.++|||++++++|||+|++||++++.+|+|++||||+||.||++|++++||++++
T Consensus        81 rKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~~k~sg~p~~rvig~gt~LDsaR~~~~lae~~~  160 (313)
T COG0039          81 RKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIAMKFSGFPKNRVIGSGTVLDSARFRTFLAEKLG  160 (313)
T ss_pred             CCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHHHHhcCCCccceecccchHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCC-cchHHHHHHHH
Q 018760          197 VNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGY-TSWAIGYSAAN  275 (350)
Q Consensus       197 v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~-~~~~~a~a~~~  275 (350)
                      ++|++|+++|+|+||+++||+||+++|+|+|+.++++.    +++++++++.+++++++++|++.||+ ++||+|.++++
T Consensus       161 v~~~~V~~~ViGeHGdt~vp~~S~a~v~G~pl~~~~~~----~~~~~~~~i~~~v~~~g~eII~~kG~~t~~~~A~a~a~  236 (313)
T COG0039         161 VSPKDVHAYVIGEHGDTMVPLWSQATVGGKPLEELLKE----DTEEDLEELIERVRNAGAEIIEAKGAGTYYGPAAALAR  236 (313)
T ss_pred             CChhHceeeEeccCCCceEEeeeeeeECCEEHHHHhhc----ccHhHHHHHHHHHHhhHHHHHHccCccchhhHHHHHHH
Confidence            99999999999999999999999999999999998753    34667889999999999999999988 99999999999


Q ss_pred             HHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018760          276 LARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL  348 (350)
Q Consensus       276 ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~  348 (350)
                      ++++|++|+++++|++++++|+||+  +++|||+||++|++|++.+.+++|+++|+++|++|++.+|+.++.+
T Consensus       237 ~~~ail~d~~~vl~~s~~l~G~yg~--~dv~~gvP~~lg~~Gv~~iie~~l~~~E~~~l~~s~~~lk~~i~~~  307 (313)
T COG0039         237 MVEAILRDEKRVLPVSVYLDGEYGV--EDVYFGVPAVLGKNGVEEILELLLSDDEQEKLDKSAEELKKNIELV  307 (313)
T ss_pred             HHHHHHcCCCceEEEEEeecCccCc--CCeEEEeeEEEcCCCcEEEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999995  4899999999999999999999999999999999999999999875

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=1.6e-71  Score=526.49  Aligned_cols=311  Identities=56%  Similarity=0.903  Sum_probs=291.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGA  115 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~  115 (350)
                      +.+||+|||||.||+++++.|+..++.+||+|+|++++++++.++||+|+.++....++..++||++++|||+||+++|.
T Consensus         2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~~~adivvitaG~   81 (312)
T cd05293           2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVTANSKVVIVTAGA   81 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHhCCCCEEEECCCC
Confidence            35699999999999999999999999999999999999999999999999865544578877899999999999999999


Q ss_pred             CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHc
Q 018760          116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHL  195 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l  195 (350)
                      +++||++|.|++.+|+++++++++.|++++|++++|++|||+|++|+++++++|+|++||||+||.||+.|+++++|+++
T Consensus        82 ~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~gt~Ld~~R~~~~la~~l  161 (312)
T cd05293          82 RQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERL  161 (312)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEecCchHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHHHH
Q 018760          196 DVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAAN  275 (350)
Q Consensus       196 ~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~~~  275 (350)
                      ++++++|+++||||||++++|+||+++|+|+|+.+++.......++++++++.+++++++++|++.||+++|++|.++++
T Consensus       162 ~v~~~~v~~~v~GeHG~s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~kg~t~~~~a~a~~~  241 (312)
T cd05293         162 GVAPSSVHGWIIGEHGDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLKGYTSWAIGLSVAD  241 (312)
T ss_pred             CCChhhEEEEEeecCCCCccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            99999999999999999999999999999999988864321123345678999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q 018760          276 LARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQ  347 (350)
Q Consensus       276 ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~  347 (350)
                      ++++|++|++.++|++++++|.||++ ++++||+||++|++|++++.+++|+++|+++|++|++.|++.+++
T Consensus       242 ii~ail~d~~~~~~vsv~~~g~yg~~-~d~~~svP~~ig~~Gi~~i~~l~L~~~E~~~l~~s~~~i~~~~~~  312 (312)
T cd05293         242 LVDAILRNTGRVHSVSTLVKGLHGIE-DEVFLSLPCILGENGITHVIKQPLTEEEQEKLQKSADTLWEVQKQ  312 (312)
T ss_pred             HHHHHHcCCCeEEEEEEEeCCccCCC-CCeEEEEeEEEeCCceEEEecCCCCHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999997 599999999999999999999999999999999999999998763

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=5.1e-71  Score=521.60  Aligned_cols=302  Identities=36%  Similarity=0.604  Sum_probs=283.4

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCC--CceEEEcCCccccCCCCEEEEecCCC
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP--RTKILASVDYAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~--~~~v~~t~~~~al~~aDiVIi~~g~~  116 (350)
                      ||+|||||.||+++|+.|+.+++++||+|+|++++++++.++||+|..++..  ..++. +++|++++|||+||+++|.|
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~-~~~y~~~~~aDivvitaG~~   79 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIR-AGDYDDCADADIIVITAGPS   79 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEE-ECCHHHhCCCCEEEECCCCC
Confidence            8999999999999999999999999999999999999999999999876643  34666 56899999999999999999


Q ss_pred             cCcccc--HHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHH
Q 018760          117 QIAGES--RLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADH  194 (350)
Q Consensus       117 ~~~g~~--r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~  194 (350)
                      ++||++  |+|++..|+++++++++.+.+++|++++|++|||+|+||+++++.+|+|++||||+||.||++|+++++|++
T Consensus        80 ~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~~k~sg~p~~rviG~gt~LDs~R~~~~la~~  159 (307)
T cd05290          80 IDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIAATEFDYPANKVIGTGTMLDTARLRRIVADK  159 (307)
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHHHHHhCcChhheecccchHHHHHHHHHHHHH
Confidence            999999  699999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHHH
Q 018760          195 LDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAA  274 (350)
Q Consensus       195 l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~~  274 (350)
                      ++++|++|+++||||||++++|+||+++|+|+|+.+++....  .+++.++++.+++++++++|++.||+++|++|.+++
T Consensus       160 l~v~~~~V~~~ViGeHGds~vp~wS~~~v~g~~l~~~~~~~~--~~~~~~~~i~~~v~~~g~~Ii~~KG~t~~~ia~a~~  237 (307)
T cd05290         160 YGVDPKNVTGYVLGEHGSHAFPVWSLVNIAGLPLDELEALFG--KEPIDKDELLEEVVQAAYDVFNRKGWTNAGIAKSAS  237 (307)
T ss_pred             hCCCcccEEEEEEecCCCceEEeeeeeEECCEEHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHHccCeehHHHHHHHH
Confidence            999999999999999999999999999999999988764211  123457889999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHH
Q 018760          275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQ  345 (350)
Q Consensus       275 ~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~  345 (350)
                      +++++|++|++.++|++++++|+||.  +++|+|+||++|++||+++.+++|+++|+++|++|++.|++.+
T Consensus       238 ~ii~ail~d~~~v~~vsv~~~G~yg~--~~v~~svP~~ig~~Gv~~i~~l~L~~~E~~~l~~s~~~i~~~~  306 (307)
T cd05290         238 RLIKAILLDERSILPVCTLLSGEYGL--SDVALSLPTVIGAKGIERVLEIPLDEWELEKLHKSAKAIRETI  306 (307)
T ss_pred             HHHHHHHhCCCeEEEEEEeeCCccCC--CCEEEEEEEEEeCCCceEecCCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999995  4899999999999999999999999999999999999999875

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=100.00  E-value=4.2e-70  Score=518.08  Aligned_cols=312  Identities=40%  Similarity=0.758  Sum_probs=295.5

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEe
Q 018760           33 PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVT  112 (350)
Q Consensus        33 ~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~  112 (350)
                      +++.++||+|||||.||+++++.|+..++++||+|+|++++++++.++|++|+.++.....+. ++++++++|||+||++
T Consensus         2 ~~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~-~~~~~~~~~adivIit   80 (315)
T PRK00066          2 MKKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY-AGDYSDCKDADLVVIT   80 (315)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE-eCCHHHhCCCCEEEEe
Confidence            356678999999999999999999999999999999999999999999999998654345555 4678999999999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHH
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLA  192 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la  192 (350)
                      +|.|++||++|.|++..|+++++++++.+.+++|++|+|++|||+|++++++++++|+|++||||+||.+|+.|+++.+|
T Consensus        81 ag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~~k~sg~p~~~viG~gt~LDs~R~~~~la  160 (315)
T PRK00066         81 AGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYATWKLSGFPKERVIGSGTSLDSARFRYMLS  160 (315)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHHHHHhCCCHHHEeecCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHH
Q 018760          193 DHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS  272 (350)
Q Consensus       193 ~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a  272 (350)
                      ++++++|++|+++||||||++++|+||+++|+|+|+.+++.+. .|+++++++++.++++++++++++.||+++|++|.+
T Consensus       161 ~~l~v~~~~V~~~viGeHG~s~v~~~S~~~v~g~~l~~~~~~~-~~~~~~~~~~i~~~v~~~g~~ii~~kg~t~~~~a~~  239 (315)
T PRK00066        161 EKLDVDPRSVHAYIIGEHGDTEFPVWSHANVAGVPLEEYLEEN-EQYDEEDLDEIFENVRDAAYEIIEKKGATYYGIAMA  239 (315)
T ss_pred             HHhCCCcccEEEEEEecCCCcceecceeceECCEEHHHHhhhc-cCcCHHHHHHHHHHHHHHHHHHHhcCCeehHHHHHH
Confidence            9999999999999999999999999999999999999987654 478888899999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018760          273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL  348 (350)
Q Consensus       273 ~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~  348 (350)
                      +++++++++++++.++|++++.+|+||.  +++|||+||++|++||+++.+++|+++|+++|++|+++|++.++++
T Consensus       240 ~~~i~~ail~~~~~v~~~sv~~~g~yg~--~~v~~S~Pv~ig~~Gv~~i~~l~L~~~E~~~L~~s~~~l~~~~~~~  313 (315)
T PRK00066        240 LARITKAILNNENAVLPVSAYLEGQYGE--EDVYIGVPAVVNRNGIREIVELPLNDDEKQKFAHSADVLKEIMDEA  313 (315)
T ss_pred             HHHHHHHHHcCCCeEEEEEEEeccccCC--CCEEEEeEEEEeCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999995  4899999999999999999999999999999999999999999876

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=100.00  E-value=1.3e-68  Score=504.12  Aligned_cols=298  Identities=49%  Similarity=0.835  Sum_probs=278.8

Q ss_pred             EEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCC-CceEEEcCCccccCCCCEEEEecCCCcCcc
Q 018760           42 VIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKILASVDYAVTAGSDLCIVTAGARQIAG  120 (350)
Q Consensus        42 IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~-~~~v~~t~~~~al~~aDiVIi~~g~~~~~g  120 (350)
                      |||+|.||+++++.|+..++++||+|+|++++++++.++||+|+..+.. ..++. ++++++++|||+||+++|.|++||
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~-~~~~~~~~daDivVitag~~rk~g   79 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR-SGDYSDCKDADLVVITAGAPQKPG   79 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe-cCCHHHHCCCCEEEECCCCCCCCC
Confidence            6899999999999999999999999999999999999999999986542 34565 467899999999999999999999


Q ss_pred             ccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcCCCCc
Q 018760          121 ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQ  200 (350)
Q Consensus       121 ~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~v~p~  200 (350)
                      ++|.|++.+|+++++++++.|++++|++++|++|||+|++|+++++++++|++||||+||.||+.|+++++|++++++|+
T Consensus        80 ~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~~~sg~p~~~viG~gt~LDs~R~~~~la~~l~v~~~  159 (299)
T TIGR01771        80 ETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQ  159 (299)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHhCCCHHHEEeccchHHHHHHHHHHHHHhCcCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHHHHHHHHH
Q 018760          201 DVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSI  280 (350)
Q Consensus       201 ~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~~~ii~ai  280 (350)
                      +|+++||||||++++|+||+++|+|+|+.+++.+.. .+++++++++.+++++++++|++.||+++|++|.++++++++|
T Consensus       160 ~V~~~v~GeHG~s~vp~~S~~~v~g~pl~~~~~~~~-~~~~~~~~~i~~~v~~~g~~ii~~kG~t~~~~a~a~~~~i~ai  238 (299)
T TIGR01771       160 SVHAYIIGEHGDSEVPVWSSATIGGVPLLDYLKAKG-TETDLDLEEIEKEVRDAAYEIINRKGATYYGIGMAVARIVEAI  238 (299)
T ss_pred             eEEEEEEecCCCceeeceeeeEECCEEHHHHhhhcc-cccHHHHHHHHHHHHHHHHHHhhcCCeeeHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988764311 1124457789999999999999999999999999999999999


Q ss_pred             HhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHH
Q 018760          281 IRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILE  343 (350)
Q Consensus       281 ~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~  343 (350)
                      ++|++.++|+|++.+|+||++  ++|||+||+||++|++++.+++|+++|+++|++|++.||+
T Consensus       239 l~d~~~v~~~s~~~~g~yg~~--~~~~s~P~~ig~~Gv~~i~~l~L~~~E~~~l~~s~~~ik~  299 (299)
T TIGR01771       239 LHDENRVLPVSAYLDGEYGIK--DVYIGVPAVLGRNGVEEIIELPLSDEEKEAFQKSAETLKK  299 (299)
T ss_pred             HcCCCcEEEEEEEecccCCCC--CEEEEEEEEEeCCeeEEEccCCCCHHHHHHHHHHHHHHhC
Confidence            999999999999999999985  7999999999999999999999999999999999999974

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=100.00  E-value=2.4e-67  Score=498.80  Aligned_cols=304  Identities=42%  Similarity=0.727  Sum_probs=285.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCC-CceEEEcCCccccCCCCEEEEecCCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKILASVDYAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~-~~~v~~t~~~~al~~aDiVIi~~g~~  116 (350)
                      +||+|||+|.+|+++++.|+..++..+|+|+|++++++++.++|++|...+.. ..++. +.+++++++||+||+++|.|
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~-~~~~~~l~~aDIVIitag~~   79 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK-AGDYSDCKDADIVVITAGAP   79 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE-cCCHHHhCCCCEEEEccCCC
Confidence            48999999999999999999999888999999999999999999999875332 33444 45678899999999999999


Q ss_pred             cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcC
Q 018760          117 QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLD  196 (350)
Q Consensus       117 ~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~  196 (350)
                      +++|++|.+++.+|+++++++++.|+++||++++|++|||+|++|+++++++|+|++||||+||.||++|+++++|++++
T Consensus        80 ~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~~~~~g~p~~~v~g~gt~LDs~R~~~~la~~l~  159 (306)
T cd05291          80 QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLN  159 (306)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHhCcCHHHEeeccchHHHHHHHHHHHHHHC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHHHHH
Q 018760          197 VNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANL  276 (350)
Q Consensus       197 v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~~~i  276 (350)
                      ++|++|+++|||+||++++|+||+++|+|+|+.+++.+.  .+.+++++++.+++++++++|++.||+++|++|.+++++
T Consensus       160 v~~~~v~~~V~G~Hg~s~~~~~S~~~v~g~~~~~~~~~~--~~~~~~~~~~~~~v~~~g~~ii~~kg~t~~~~a~a~~~~  237 (306)
T cd05291         160 VDPRSVHAYVLGEHGDSQFVAWSTVTVGGKPLLDLLKEG--KLSELDLDEIEEDVRKAGYEIINGKGATYYGIATALARI  237 (306)
T ss_pred             CCcccceEEEEecCCCceeecceeeEEcCEEHHHHhhcc--ccChHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHH
Confidence            999999999999999999999999999999999887553  344567889999999999999999999999999999999


Q ss_pred             HHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q 018760          277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQS  346 (350)
Q Consensus       277 i~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~  346 (350)
                      +++|++|++.++|++++.+|+||.  +++|||+||++|++||+++.+++|+++|+++|++|+++|++.++
T Consensus       238 ~~ail~~~~~v~~~s~~~~g~yg~--~~v~~s~P~~ig~~Gv~~i~~~~l~~~E~~~l~~s~~~l~~~~~  305 (306)
T cd05291         238 VKAILNDENAILPVSAYLDGEYGE--KDVYIGVPAIIGRNGVEEVIELDLTEEEQEKFEKSADIIKENIK  305 (306)
T ss_pred             HHHHHcCCCEEEEEEEEeccccCC--CCEEEEEEEEEeCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999995  48999999999999999999999999999999999999998875

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=100.00  E-value=1.5e-67  Score=500.44  Aligned_cols=305  Identities=22%  Similarity=0.343  Sum_probs=280.6

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHhcCCCC-----eEEEEeCCc--cchHHHHHHHHHHhh-cCCCceEEEcCCccccCC
Q 018760           35 KRHTKISVIGT-GNVGMAIAQTILTQDFVE-----ELALVDAKA--DKLRGEMLDLQHAAA-FLPRTKILASVDYAVTAG  105 (350)
Q Consensus        35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~-----ev~L~D~~~--~~l~~~~~dl~~~~~-~~~~~~v~~t~~~~al~~  105 (350)
                      +++.||+|||| |.||+++++.|+..++++     ||+|+|+++  +++++.++||+|+.. +....++. +.++++++|
T Consensus         1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~~~~~~~~d   79 (323)
T TIGR01759         1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT-TDPEEAFKD   79 (323)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe-cChHHHhCC
Confidence            46889999999 999999999999999998     999999965  669999999999973 32334554 467899999


Q ss_pred             CCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCC-CeEEEEEcCCcchHHHHHHHHh-CCCCCcEeeecCCcc
Q 018760          106 SDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSP-DCILLIVANPVDILTYVAWKLS-GLPSNRVIGSGTNLD  183 (350)
Q Consensus       106 aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNP~~~~~~~~~~~s-g~~~~rviG~g~~ld  183 (350)
                      ||+||+++|.|++||++|.|++..|++++++++++|.+++| ++++|++|||+|++|+++++.+ |+|++||||+ |.||
T Consensus        80 aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~-t~LD  158 (323)
T TIGR01759        80 VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIASKNAPDIPPKNFSAM-TRLD  158 (323)
T ss_pred             CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEe-eHHH
Confidence            99999999999999999999999999999999999999998 9999999999999999999999 9999999999 9999


Q ss_pred             HHHHHHHHHHHcCCCCcceE-EEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhc
Q 018760          184 SSRFRFLLADHLDVNAQDVQ-AYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK  262 (350)
Q Consensus       184 ~~r~~~~la~~l~v~p~~v~-~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~k  262 (350)
                      ++|+++++|++++++|++|+ .+||||||++++|+||+++|+|+|+.+++.+.. |    .++++.+++++++++|++.|
T Consensus       159 s~R~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~pl~~~~~~~~-~----~~~~i~~~v~~~g~~Ii~~k  233 (323)
T TIGR01759       159 HNRAKYQLAAKAGVPVSDVKNVIIWGNHSNTQVPDFTHATVDGRPVKEVIKDDK-W----LEGEFIPTVQQRGAAVIEAR  233 (323)
T ss_pred             HHHHHHHHHHHhCcChHHeEEeEEEecCCCceeeccccCEECCccHHHHhcchh-h----HHHHHHHHHHhhHHHHHhcc
Confidence            99999999999999999995 569999999999999999999999988764311 1    26789999999999999999


Q ss_pred             CCcch-HHHHHHHHHHHHHHhcC--CCeEEEEEEecc-ccCCCCCCeEEEEeEEEcCCceEEeec-CCCCHHHHHHHHHH
Q 018760          263 GYTSW-AIGYSAANLARSIIRDQ--RKIHPVSVLAKG-FYGIDGGDVFLSLPAQLGRGGVLGVTN-IHLNQEESHRLRNS  337 (350)
Q Consensus       263 g~~~~-~~a~a~~~ii~ai~~~~--~~v~~v~v~~~g-~~gi~~~~~~~s~Pv~ig~~Gv~~v~~-~~L~~~E~~~l~~s  337 (350)
                      |+++| ++|.++++++++|++|+  +.++|+|++++| +||+| +++|||+||++|++|++++.+ ++|+++|+++|++|
T Consensus       234 G~t~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~g~~Yg~~-~~v~~s~P~~lg~~Gv~~iv~~l~L~~~E~~~l~~s  312 (323)
T TIGR01759       234 GASSAASAANAAIDHVRDWVTGTPEGDWVSMGVYSDGNPYGIP-EGIIFSFPVTCKGDGEWEIVEGLPLDDFVRGKLDAT  312 (323)
T ss_pred             CCcchHHHHHHHHHHHHHHHcCCCCCcEEEEEEEeCCcccCCC-CCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHH
Confidence            99999 47799999999999998  899999999999 99996 589999999999999999888 99999999999999


Q ss_pred             HHHHHHHHHH
Q 018760          338 AKTILEVQSQ  347 (350)
Q Consensus       338 a~~i~~~~~~  347 (350)
                      ++.|+++++.
T Consensus       313 a~~lk~~~~~  322 (323)
T TIGR01759       313 EDELLEEKEE  322 (323)
T ss_pred             HHHHHHHHhc
Confidence            9999999864

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK05442 malate dehydrogenase; Provisional

Probab=100.00  E-value=5.5e-67  Score=497.26  Aligned_cols=306  Identities=20%  Similarity=0.318  Sum_probs=280.2

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCC-----eEEEEeCC--ccchHHHHHHHHHHh-hcCCCceEEEcCCccccC
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVE-----ELALVDAK--ADKLRGEMLDLQHAA-AFLPRTKILASVDYAVTA  104 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~-----ev~L~D~~--~~~l~~~~~dl~~~~-~~~~~~~v~~t~~~~al~  104 (350)
                      +++++||+|||| |.||+++++.|+..++++     ||+|+|++  ++++++.++||+|+. ++....++. +.++++++
T Consensus         1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~-~~~y~~~~   79 (326)
T PRK05442          1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT-DDPNVAFK   79 (326)
T ss_pred             CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe-cChHHHhC
Confidence            467889999998 999999999999999988     99999995  457999999999997 333334554 56689999


Q ss_pred             CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcchHHHHHHHHh-CCCCCcEeeecCCc
Q 018760          105 GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDILTYVAWKLS-GLPSNRVIGSGTNL  182 (350)
Q Consensus       105 ~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~~~~~~~~s-g~~~~rviG~g~~l  182 (350)
                      |||+||+++|.|++||++|.|++..|++++++++++|.+++ |++++|++|||+|++|+++++++ |+|++||||+ |.|
T Consensus        80 daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~-t~L  158 (326)
T PRK05442         80 DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAMKNAPDLPAENFTAM-TRL  158 (326)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHHHHcCCCCHHHEEee-eHH
Confidence            99999999999999999999999999999999999999987 89999999999999999999999 9999999999 999


Q ss_pred             cHHHHHHHHHHHcCCCCcceEEE-EEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHh
Q 018760          183 DSSRFRFLLADHLDVNAQDVQAY-IVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL  261 (350)
Q Consensus       183 d~~r~~~~la~~l~v~p~~v~~~-v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~  261 (350)
                      |++|+++++|++++++|++|+++ ||||||++++|+||+++|+|+|+.+++.+.     +..++++.+++++++++|++.
T Consensus       159 Ds~R~r~~la~~l~v~~~~V~~~vV~GeHG~s~~~~~S~~~v~g~pl~~~~~~~-----~~~~~~i~~~v~~~g~~Ii~~  233 (326)
T PRK05442        159 DHNRALSQLAAKAGVPVADIKKMTVWGNHSATQYPDFRHATIDGKPAAEVINDQ-----AWLEDTFIPTVQKRGAAIIEA  233 (326)
T ss_pred             HHHHHHHHHHHHhCcChHHeEEeEEEECCcCceeeccccCEECCEEHHHHccch-----hhHHHHHHHHHHhhHHHHHhC
Confidence            99999999999999999999996 599999999999999999999998876321     112678999999999999999


Q ss_pred             cCCcchHHHHH-HHHHHHHHHhc--CCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEe-ecCCCCHHHHHHHHHH
Q 018760          262 KGYTSWAIGYS-AANLARSIIRD--QRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGV-TNIHLNQEESHRLRNS  337 (350)
Q Consensus       262 kg~~~~~~a~a-~~~ii~ai~~~--~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v-~~~~L~~~E~~~l~~s  337 (350)
                      ||+++|++|.+ +++++++++++  ++.++|+|++++|+||+| +++|||+||++| +|++++ .+++|+++|+++|++|
T Consensus       234 kG~t~~~~a~~~~~~iv~ail~~~~~~~i~~~sv~~~g~ygi~-~~v~~s~P~~ig-~Gv~~iv~~l~L~~~E~~~l~~s  311 (326)
T PRK05442        234 RGASSAASAANAAIDHVRDWVLGTPEGDWVSMGVPSDGSYGIP-EGLIFGFPVTCE-NGEYEIVQGLEIDDFSREKIDAT  311 (326)
T ss_pred             cCCccHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCccCCc-CCeEEEEEEEEc-CcEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999 59999999999  899999999999999997 599999999999 999998 4599999999999999


Q ss_pred             HHHHHHHHHHh
Q 018760          338 AKTILEVQSQL  348 (350)
Q Consensus       338 a~~i~~~~~~~  348 (350)
                      ++.|+++++.+
T Consensus       312 ~~~l~~~~~~~  322 (326)
T PRK05442        312 LAELEEERDAV  322 (326)
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=100.00  E-value=1e-66  Score=492.73  Aligned_cols=299  Identities=49%  Similarity=0.821  Sum_probs=282.7

Q ss_pred             EEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCCcCc
Q 018760           40 ISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIA  119 (350)
Q Consensus        40 I~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~~~~  119 (350)
                      |+|||+|.||+++++.|+..++++||+|+|++++++++.++||+|...+....++..+++++++++||+||+++|.|+++
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p~~~   80 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPRKP   80 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCCCCC
Confidence            68999999999999999999999999999999999999999999987643345666667789999999999999999999


Q ss_pred             cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcCCCC
Q 018760          120 GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNA  199 (350)
Q Consensus       120 g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~v~p  199 (350)
                      |++|.+++.+|+++++++++.|+++||++|+|++|||+|++++++++++|+|++||||+||.+|+.|+++++|++++++|
T Consensus        81 ~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~~~~sg~~~~kviG~gt~lDs~r~~~~la~~l~v~~  160 (300)
T cd00300          81 GETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVDP  160 (300)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHHHHHhCcCHHHEEecCCcHHHHHHHHHHHHHhCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHHHHHHHH
Q 018760          200 QDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARS  279 (350)
Q Consensus       200 ~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~~~ii~a  279 (350)
                      ++|+++|+||||++++|+||+++|+|+|+.+++++     +++.++++.++++++++++++.||+++|++|.++++++++
T Consensus       161 ~~v~~~viGeHg~s~v~~~S~~~v~g~p~~~~~~~-----~~~~~~~l~~~v~~~~~~ii~~kg~t~~~~a~a~~~~~~a  235 (300)
T cd00300         161 QSVHAYVLGEHGDSQVVAWSTATVGGLPLEELAPF-----TKLDLEAIEEEVRTSGYEIIRLKGATNYGIATAIADIVKS  235 (300)
T ss_pred             ccEEEEEEeccCCceeeeeeeeEECCEEHHHhhcc-----cHHHHHHHHHHHHHHHHHHHHccCcchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888643     2456788999999999999999999999999999999999


Q ss_pred             HHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHH
Q 018760          280 IIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQ  345 (350)
Q Consensus       280 i~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~  345 (350)
                      |+++++.++|++++++|+||.  +++|||+||++|++|++++.+++|+++|+++|++|+++|++.+
T Consensus       236 i~~~~~~v~~~s~~~~g~yg~--~~~~~s~Pv~ig~~Gi~~i~~l~L~~~E~~~l~~s~~~l~~~~  299 (300)
T cd00300         236 ILLDERRVLPVSAVQEGQYGI--EDVALSVPAVVGREGVVRILEIPLTEDEEAKLQKSAEALKEVL  299 (300)
T ss_pred             HHcCCCeEEEEEEEecCccCC--CCEEEEEEEEEeCCCeEEEecCCCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999995  4899999999999999999999999999999999999999875

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PTZ00117 malate dehydrogenase; Provisional

Probab=100.00  E-value=2e-66  Score=494.27  Aligned_cols=308  Identities=31%  Similarity=0.524  Sum_probs=289.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiVIi~~g  114 (350)
                      +.+||+|||||+||+++++.++..++ .+|+|+|++++++++.++|++|...+. ...++..++|+++++|||+||+++|
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l~~ADiVVitag   82 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDIKDSDVVVITAG   82 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHhCCCCEEEECCC
Confidence            56799999999999999999999987 689999999999999999999986433 2457777778899999999999999


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHH
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADH  194 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~  194 (350)
                      .++++|++|.|++..|.++++++++.|+++||++|+|++|||+|++++++++++++|++||||+||.+|++|+++++|++
T Consensus        83 ~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~lds~R~~~~la~~  162 (319)
T PTZ00117         83 VQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLDSSRFRCNLAEK  162 (319)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHh--cCCcchHHHHH
Q 018760          195 LDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYS  272 (350)
Q Consensus       195 l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~--kg~~~~~~a~a  272 (350)
                      ++++|++|+++|+||||++++|+||+++|+|+|+.+++++.  +++.++++++.+++++++++|++.  ||+++|++|.+
T Consensus       163 l~v~~~~v~~~viGeHg~~~v~~~s~~~v~g~p~~~~~~~~--~~~~~~~~~i~~~v~~~g~~ii~~~~kg~t~~~~a~a  240 (319)
T PTZ00117        163 LGVSPGDVSAVVIGGHGDLMVPLPRYCTVNGIPLSDFVKKG--AITEKEINEIIKKTRNMGGEIVKLLKKGSAFFAPAAA  240 (319)
T ss_pred             hCCCcccceEEEeecCCCcEEeceeeceECCEEHHHHhhcc--ccCHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHH
Confidence            99999999999999999999999999999999999887542  366677899999999999999996  88999999999


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018760          273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL  348 (350)
Q Consensus       273 ~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~  348 (350)
                      +++++++|++|++.++|++++++|+||++  ++|||+||++|++||+++.+++|+++|+++|++|++.|++.++++
T Consensus       241 ~~~~~~ail~~~~~v~~~s~~~~g~yg~~--~~~~s~P~~ig~~Gv~~i~~l~l~~~E~~~l~~s~~~l~~~~~~~  314 (319)
T PTZ00117        241 IVAMIEAYLKDEKRVLVCSVYLNGQYNCK--NLFVGVPVVIGGKGIEKVIELELNAEEKELFDKSIESIQELTQKA  314 (319)
T ss_pred             HHHHHHHHhcCCCeEEEEEEEeccccCCC--CeEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999995  799999999999999999999999999999999999999998875

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=2.1e-66  Score=492.27  Aligned_cols=308  Identities=48%  Similarity=0.807  Sum_probs=289.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCCc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQ  117 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~~  117 (350)
                      |||+|||+|.||+++++.|+..++..+|+|+|++++++++.++|+.+...+....++. +++++++++||+||++++.++
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~-~~d~~~l~~aDiViita~~~~   79 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY-AGDYADCKGADVVVITAGANQ   79 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe-eCCHHHhCCCCEEEEccCCCC
Confidence            6999999999999999999999988899999999999999999999986544334554 567889999999999999999


Q ss_pred             CccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcCC
Q 018760          118 IAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDV  197 (350)
Q Consensus       118 ~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~v  197 (350)
                      +++++|.+++.+|+++++++++.|++++|+++++++|||+|++++++++++|+|++||||+||.||+.|+++++|+++++
T Consensus        80 ~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~~~~sg~p~~~viG~gt~LDs~R~~~~la~~~~v  159 (308)
T cd05292          80 KPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLGV  159 (308)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHeecccchhhHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHHHHHH
Q 018760          198 NAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLA  277 (350)
Q Consensus       198 ~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~~~ii  277 (350)
                      ++++|+++|||+||++++|+||+++|+|+|+.+++......++++.++++.+++++++++|++.||+++|++|.++++++
T Consensus       160 ~~~~v~~~viGeHg~~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~kg~t~~~~a~a~~~i~  239 (308)
T cd05292         160 DPRSVHAYIIGEHGDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERKGATYYAIGLALARIV  239 (308)
T ss_pred             CccceeceeeccCCCcEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999887543224666778999999999999999999999999999999999


Q ss_pred             HHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018760          278 RSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL  348 (350)
Q Consensus       278 ~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~  348 (350)
                      ++|++|++.++|++++.+|+||++  ++|||+||+||++||+++.+++|+++|+++|++|++.|++.+++|
T Consensus       240 ~ail~~~~~v~~~s~~~~g~yg~~--~~~~s~P~~ig~~Gv~~i~~~~L~~~E~~~l~~s~~~i~~~~~~~  308 (308)
T cd05292         240 EAILRDENSVLTVSSLLDGQYGIK--DVALSLPCIVGRSGVERVLPPPLSEEEEEALRASAEVLKEAIESL  308 (308)
T ss_pred             HHHHcCCCcEEEEEEEEcccCCCC--CEEEEEEEEEeCCceEEecCCCCCHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999999985  799999999999999999999999999999999999999998864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=100.00  E-value=5.8e-66  Score=490.68  Aligned_cols=310  Identities=31%  Similarity=0.582  Sum_probs=289.7

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiVIi~  112 (350)
                      +.+.+||+|||||+||+++++.++..++ .+|+|+|++++++++.++|+.|...+. ...++..++|+++++|||+||++
T Consensus         3 ~~~~~KI~IIGaG~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~~aDiVI~t   81 (321)
T PTZ00082          3 MIKRRKISLIGSGNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIAGSDVVIVT   81 (321)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhCCCCEEEEC
Confidence            4566899999999999999999999997 469999999999988999999986543 24578877899999999999999


Q ss_pred             cCCCcCccc-----cHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHH
Q 018760          113 AGARQIAGE-----SRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRF  187 (350)
Q Consensus       113 ~g~~~~~g~-----~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~  187 (350)
                      +|.++++|+     +|.+++..|++++++++++|+++||++|+|++|||+|++++.+++++++|++||||+||.+|+.|+
T Consensus        82 ag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlgt~lds~R~  161 (321)
T PTZ00082         82 AGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMAGVLDSSRL  161 (321)
T ss_pred             CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEecCcccHHHH
Confidence            999999999     999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHh--cCCc
Q 018760          188 RFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYT  265 (350)
Q Consensus       188 ~~~la~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~--kg~~  265 (350)
                      ++.+|++++++|++|+++|+||||++++|+||+++|+|.|+.++++..  ++++++++++.+++++++++|++.  ||++
T Consensus       162 ~~~la~~l~v~~~~v~~~viGeHg~s~v~~~S~~~i~g~~~~~~~~~~--~~~~~~~~~i~~~~~~~g~~i~~~~gkg~t  239 (321)
T PTZ00082        162 RTYIAEKLGVNPRDVHASVIGAHGDKMVPLPRYVTVGGIPLSEFIKKG--LITQEEIDEIVERTRNTGKEIVDLLGTGSA  239 (321)
T ss_pred             HHHHHHHhCCCcccceeeEEecCCCceEecceeeEECCEEHHHhhhcc--cCCHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence            999999999999999999999999999999999999999999887542  467778899999999999999995  6899


Q ss_pred             chHHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHH
Q 018760          266 SWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQ  345 (350)
Q Consensus       266 ~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~  345 (350)
                      +|++|.++++++++|++|++.++|+|++.+|+||++  ++|+|+||+||++|++++.+++|+++|+++|++|++.|++.+
T Consensus       240 ~~~ia~a~~~i~~ail~d~~~v~~vs~~~~g~yg~~--~v~~s~P~~ig~~Gv~~i~~~~l~~~E~~~l~~sa~~i~~~~  317 (321)
T PTZ00082        240 YFAPAAAAIEMAEAYLKDKKRVLPCSAYLEGQYGHK--DIYMGTPAVIGANGVEKIIELDLTPEEQKKFDESIKEVKRLE  317 (321)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcEEEEEEEecccCCCC--CeEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999994  899999999999999999999999999999999999999988


Q ss_pred             HHh
Q 018760          346 SQL  348 (350)
Q Consensus       346 ~~~  348 (350)
                      +-|
T Consensus       318 ~~~  320 (321)
T PTZ00082        318 ALL  320 (321)
T ss_pred             hhh
Confidence            754

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=100.00  E-value=2.4e-66  Score=506.12  Aligned_cols=308  Identities=19%  Similarity=0.253  Sum_probs=282.7

Q ss_pred             CCCCCCeEEEEcC-ChhHHHHHHHHHhc-------CCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEE-EcCCcccc
Q 018760           33 PTKRHTKISVIGT-GNVGMAIAQTILTQ-------DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKIL-ASVDYAVT  103 (350)
Q Consensus        33 ~~~~~~KI~IIGA-G~vG~~~a~~l~~~-------~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~-~t~~~~al  103 (350)
                      .++++.||+|||| |+||+++++.|+..       ++..||+|+|++++++++.++||+|+...... ++. .+.+|+++
T Consensus        96 ~~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~-~v~i~~~~ye~~  174 (444)
T PLN00112         96 SWKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLR-EVSIGIDPYEVF  174 (444)
T ss_pred             cCCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcC-ceEEecCCHHHh
Confidence            4667889999999 99999999999999       66679999999999999999999999732222 343 24678999


Q ss_pred             CCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhc-cCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCc
Q 018760          104 AGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVK-YSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNL  182 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~-~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~l  182 (350)
                      +|||+||+++|.|++||++|+|++..|+++++++++.|.+ ++|++++|++|||+|++|+++++.+|++|+|+||+||.|
T Consensus       175 kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~~k~sg~~~~rViGtgT~L  254 (444)
T PLN00112        175 QDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRL  254 (444)
T ss_pred             CcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHHHHHcCCCCcceEEeeccH
Confidence            9999999999999999999999999999999999999999 699999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHcCCCCcceE-EEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHh
Q 018760          183 DSSRFRFLLADHLDVNAQDVQ-AYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL  261 (350)
Q Consensus       183 d~~r~~~~la~~l~v~p~~v~-~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~  261 (350)
                      |++|++++||++++++|++|+ ++||||||+++||+||+++|+|+|+.+++.+.. |    .++++.+++++++++|++.
T Consensus       255 DsaR~r~~LA~~l~V~~~~V~~~~V~GeHGdsqvp~wS~a~V~G~pl~e~i~~~~-~----~~~ei~~~v~~~g~~Ii~~  329 (444)
T PLN00112        255 DENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKINGLPVKEVITDHK-W----LEEEFTPKVQKRGGVLIKK  329 (444)
T ss_pred             HHHHHHHHHHHHhCcCHHHcccceEEecCCCceeeccceeEECCccHHHhhcccc-c----hHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999995 589999999999999999999999988875421 2    2578899999999999999


Q ss_pred             cCCcch-HHHHHHHHHHHHHH--hcCCCeEEEEEEecc-ccCCCCCCeEEEEeEEEcCCceEEee-cCCCCHHHHHHHHH
Q 018760          262 KGYTSW-AIGYSAANLARSII--RDQRKIHPVSVLAKG-FYGIDGGDVFLSLPAQLGRGGVLGVT-NIHLNQEESHRLRN  336 (350)
Q Consensus       262 kg~~~~-~~a~a~~~ii~ai~--~~~~~v~~v~v~~~g-~~gi~~~~~~~s~Pv~ig~~Gv~~v~-~~~L~~~E~~~l~~  336 (350)
                      ||+++| ++|.++++++.+|+  +|++.++|+|++++| +||++ +++|||+||++|++|++++. +++|+++|+++|++
T Consensus       330 kG~t~~~s~a~ai~~~I~ail~~~d~~~vlpvsv~l~G~~YGi~-~dv~~SvPvvig~~Gv~~Iv~el~L~~~E~~~l~~  408 (444)
T PLN00112        330 WGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTDGNPYGIA-EGLVFSMPCRSKGDGDYEIVKDVEIDDYLRERIKK  408 (444)
T ss_pred             cCchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEEeCCcccCCC-CCeEEEeEEEEeCCeeEEECCCCCCCHHHHHHHHH
Confidence            998888 89999999999999  899999999999999 59986 59999999999999999999 79999999999999


Q ss_pred             HHHHHHHHHHH
Q 018760          337 SAKTILEVQSQ  347 (350)
Q Consensus       337 sa~~i~~~~~~  347 (350)
                      |+++|+++.+.
T Consensus       409 Sa~~L~~e~~~  419 (444)
T PLN00112        409 SEAELLAEKRC  419 (444)
T ss_pred             HHHHHHHHHHH
Confidence            99999888753

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=100.00  E-value=4e-66  Score=497.87  Aligned_cols=307  Identities=20%  Similarity=0.292  Sum_probs=280.4

Q ss_pred             CCCCCCeEEEEcC-ChhHHHHHHHHHhcCCCC-----eEEEE--eCCccchHHHHHHHHHHh-hcCCCceEE-EcCCccc
Q 018760           33 PTKRHTKISVIGT-GNVGMAIAQTILTQDFVE-----ELALV--DAKADKLRGEMLDLQHAA-AFLPRTKIL-ASVDYAV  102 (350)
Q Consensus        33 ~~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~-----ev~L~--D~~~~~l~~~~~dl~~~~-~~~~~~~v~-~t~~~~a  102 (350)
                      .++++.||+|||| |+||+++|+.|+..++++     .|+|+  |++++++++.++||+|+. ++..  ++. .++++++
T Consensus        40 ~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~--~v~i~~~~y~~  117 (387)
T TIGR01757        40 SWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLR--EVSIGIDPYEV  117 (387)
T ss_pred             cCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcC--ceEEecCCHHH
Confidence            3556899999999 999999999999999988     46666  889999999999999987 3332  333 2456899


Q ss_pred             cCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCC
Q 018760          103 TAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTN  181 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~  181 (350)
                      ++|||+||+++|.|++||++|+|++..|+++++++++.|.+++ |++++|++|||+|++|+++++.+|++|+|+||+||.
T Consensus       118 ~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~~k~sg~~~~rviG~gT~  197 (387)
T TIGR01757       118 FEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIAMKNAPNIPRKNFHALTR  197 (387)
T ss_pred             hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHHHHHcCCCcccEEEecch
Confidence            9999999999999999999999999999999999999999976 999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHcCCCCcceE-EEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHH
Q 018760          182 LDSSRFRFLLADHLDVNAQDVQ-AYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVIS  260 (350)
Q Consensus       182 ld~~r~~~~la~~l~v~p~~v~-~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~  260 (350)
                      ||++|++++||++++++|++|+ ++||||||++++|+||+++|+|+|+.+++.+.. |    .++++.+++++++++|++
T Consensus       198 LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGds~vp~~S~a~V~G~pl~~~~~~~~-~----~~~ei~~~v~~~g~eIi~  272 (387)
T TIGR01757       198 LDENRAKCQLALKSGKFYTSVSNVTIWGNHSTTQVPDFVNAKIGGRPAKEVIKDTK-W----LEEEFTPTVQKRGGALIK  272 (387)
T ss_pred             hHHHHHHHHHHHHHCcChhHcceeEEEecCCCcEEecceeeEECCEEhHHhccccc-c----hHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999995 999999999999999999999999988765421 2    267889999999999999


Q ss_pred             hcCCcch-HHHHHHHHHHHHHH--hcCCCeEEEEEEeccc-cCCCCCCeEEEEeEEEcCCceEEee-cCCCCHHHHHHHH
Q 018760          261 LKGYTSW-AIGYSAANLARSII--RDQRKIHPVSVLAKGF-YGIDGGDVFLSLPAQLGRGGVLGVT-NIHLNQEESHRLR  335 (350)
Q Consensus       261 ~kg~~~~-~~a~a~~~ii~ai~--~~~~~v~~v~v~~~g~-~gi~~~~~~~s~Pv~ig~~Gv~~v~-~~~L~~~E~~~l~  335 (350)
                      .||+++| ++|.++++++.+|+  +|++.++|+|++++|+ ||++ +++|||+||++|++|++++. +++|+++|+++|+
T Consensus       273 ~KG~t~~~s~a~ai~~~i~ai~~g~d~~~il~vsv~~~Ge~YGi~-~gv~~S~Pvvig~~Gv~~Iv~~l~L~~~E~~~l~  351 (387)
T TIGR01757       273 KWGRSSAASTAVSIADAIKSLVVPTPEGDWFSTGVYTDGNPYGIA-EGLVFSMPCRSKGDGDYELATDVSMDDFLRERIR  351 (387)
T ss_pred             ccCchhHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCcccCCC-CCEEEEEEEEEeCCEEEEECCCCCCCHHHHHHHH
Confidence            9998888 99999999999999  8999999999999997 9986 59999999999999999995 9999999999999


Q ss_pred             HHHHHHHHHHHH
Q 018760          336 NSAKTILEVQSQ  347 (350)
Q Consensus       336 ~sa~~i~~~~~~  347 (350)
                      +|++.|+++.+.
T Consensus       352 ~Sa~~L~~e~~~  363 (387)
T TIGR01757       352 KSEDELLKEKEC  363 (387)
T ss_pred             HHHHHHHHHHHH
Confidence            999999888753

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=1.6e-65  Score=484.89  Aligned_cols=301  Identities=35%  Similarity=0.581  Sum_probs=281.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEEEEecCCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiVIi~~g~~  116 (350)
                      |||+|||+|.||..+|+.++..++. +|+|+|++++...+.+.|+.+..... ...++..++|++++++||+||+++|.|
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~~~aDiVIitag~p   80 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTANSDIVVITAGLP   80 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHhCCCCEEEEcCCCC
Confidence            6999999999999999999999876 79999999888787888888765432 245787778898899999999999999


Q ss_pred             cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcC
Q 018760          117 QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLD  196 (350)
Q Consensus       117 ~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~  196 (350)
                      +++|++|++++..|.+++++++++|.+++|++++|++|||+|+++++++|++|+|++||||+||.||++|+++.+|++++
T Consensus        81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~lds~R~~~~la~~l~  160 (305)
T TIGR01763        81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLDSARFRTFIAMELG  160 (305)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHh--cCCcchHHHHHHH
Q 018760          197 VNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYSAA  274 (350)
Q Consensus       197 v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~--kg~~~~~~a~a~~  274 (350)
                      ++|++|+++||||||++++|+||+++|+|+|+.+++.       ++.++++.+++++++++|++.  ||+++|++|.+++
T Consensus       161 v~~~~v~~~v~GeHg~s~~~~wS~~~i~g~~~~~~~~-------~~~~~~l~~~v~~~g~~ii~~~~kg~t~~~~a~~~~  233 (305)
T TIGR01763       161 VSVQDVTACVLGGHGDAMVPLVRYSTVAGIPVADLIS-------AERIAEIVERTRKGGGEIVNLLKQGSAYYAPAASVV  233 (305)
T ss_pred             cCHHHeeeeEEecCCCcEEeeeeeeEECCEEHHHhcC-------HHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            9999999999999999999999999999999988653       234788999999999999997  6799999999999


Q ss_pred             HHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018760          275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL  348 (350)
Q Consensus       275 ~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~  348 (350)
                      +++++|++|++.++|+|++.+|+||++  ++|+|+||++|++||+++.+++|+++|+++|++|++.|++.+++|
T Consensus       234 ~i~~ai~~~~~~v~~~s~~~~~~yg~~--~v~~s~P~~ig~~Gv~~i~~~~l~~~E~~~l~~s~~~i~~~~~~~  305 (305)
T TIGR01763       234 EMVEAILKDRKRVLPCAAYLDGQYGID--GIYVGVPVILGKNGVEHIYELKLDQSELALLNKSAKIVDENCKML  305 (305)
T ss_pred             HHHHHHhCCCCeEEEEEEEecccCCCC--ceEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999984  899999999999999999999999999999999999999998865

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>cd00704 MDH Malate dehydrogenase

Probab=100.00  E-value=1.8e-65  Score=487.03  Aligned_cols=304  Identities=24%  Similarity=0.329  Sum_probs=279.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCC-----eEEEEeCCc--cchHHHHHHHHHHhh-cCCCceEEEcCCccccCCCCE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVE-----ELALVDAKA--DKLRGEMLDLQHAAA-FLPRTKILASVDYAVTAGSDL  108 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~-----ev~L~D~~~--~~l~~~~~dl~~~~~-~~~~~~v~~t~~~~al~~aDi  108 (350)
                      .||+|||| |.||+++++.|+..++++     +|+|+|+++  +++++.++|++|+.. +.....+. +.++++++|||+
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~-~~~~~~~~~aDi   79 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT-TDPEEAFKDVDV   79 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe-cChHHHhCCCCE
Confidence            48999999 999999999999999887     499999999  999999999999863 33334554 456799999999


Q ss_pred             EEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcchHHHHHHHHhC-CCCCcEeeecCCccHHH
Q 018760          109 CIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDILTYVAWKLSG-LPSNRVIGSGTNLDSSR  186 (350)
Q Consensus       109 VIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~~~~~~~~sg-~~~~rviG~g~~ld~~r  186 (350)
                      ||+++|.|++||++|++++..|+++++++++.|++++ |++++|++|||+|++|+++++++| +|++||||+ |.||++|
T Consensus        80 VVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~vig~-t~LDs~R  158 (323)
T cd00704          80 AILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIALKNAPNLPPKNFTAL-TRLDHNR  158 (323)
T ss_pred             EEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEe-eHHHHHH
Confidence            9999999999999999999999999999999999996 999999999999999999999999 699999999 9999999


Q ss_pred             HHHHHHHHcCCCCcceE-EEEEeecCCceeeeecceeecCccccccchhhhccCCHH-HHHHHHHHHHhhHHHHHHhcCC
Q 018760          187 FRFLLADHLDVNAQDVQ-AYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKE-TLESIHKEVVDSAYEVISLKGY  264 (350)
Q Consensus       187 ~~~~la~~l~v~p~~v~-~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~-~~~~i~~~v~~~~~~v~~~kg~  264 (350)
                      +++++|++++++|++|+ ++||||||++++|+||+++|+|.|+.++.+.   .++++ ..+++.+++++++++|++.||+
T Consensus       159 ~r~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~g~~~~~~~~~---~~~~~~~~~~i~~~v~~~~~~Ii~~kg~  235 (323)
T cd00704         159 AKAQVARKLGVRVSDVKNVIIWGNHSNTQVPDLSNAVVYGPGGTEWVLD---LLDEEWLNDEFVKTVQKRGAAIIKKRGA  235 (323)
T ss_pred             HHHHHHHHhCcCHHHceeeeEEecccCceeeccccceecCccHHHhccc---ccChHHHHHHHHHHHHhhHHHHHhccCc
Confidence            99999999999999995 5899999999999999999999999876532   13333 3678999999999999999999


Q ss_pred             cchH-HHHHHHHHHHHHHhcCC--CeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHH
Q 018760          265 TSWA-IGYSAANLARSIIRDQR--KIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKT  340 (350)
Q Consensus       265 ~~~~-~a~a~~~ii~ai~~~~~--~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~  340 (350)
                      ++|+ +|.++++++++|++|++  .++|||++++|+| |+| +++|||+||++|++||+++.+++|+++|+++|++|++.
T Consensus       236 t~~~~~a~a~~~iv~ail~~~~~~~v~~~s~~~~g~y~gi~-~~v~~s~P~~ig~~Gv~~v~~l~L~~~E~~~l~~s~~~  314 (323)
T cd00704         236 SSAASAAKAIADHVKDWLFGTPPGEIVSMGVYSPGNPYGIP-PGIVFSFPCTCKGGGWHVVEDLKLNDWLREKLKATEEE  314 (323)
T ss_pred             chhHHHHHHHHHHHHHHHhCCCCCcEEEEEEEeCCccCCCC-CceEEEEEEEEcCCEEEEecCCCCCHHHHHHHHHHHHH
Confidence            9996 69999999999999999  9999999999999 996 58999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 018760          341 ILEVQSQ  347 (350)
Q Consensus       341 i~~~~~~  347 (350)
                      |+++.+.
T Consensus       315 l~~~~~~  321 (323)
T cd00704         315 LIEEKEI  321 (323)
T ss_pred             HHHHHHh
Confidence            9998764

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=100.00  E-value=9.5e-65  Score=481.88  Aligned_cols=306  Identities=21%  Similarity=0.331  Sum_probs=280.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCC-----eEEEEeCCc--cchHHHHHHHHHHh-hcCCCceEEEcCCccccCCC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVE-----ELALVDAKA--DKLRGEMLDLQHAA-AFLPRTKILASVDYAVTAGS  106 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~-----ev~L~D~~~--~~l~~~~~dl~~~~-~~~~~~~v~~t~~~~al~~a  106 (350)
                      +++||+|||| |.||+++++.|+..++++     ||+|+|+++  +++++.++||+|+. .+....++. +.++++++||
T Consensus         1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~~~~~~~~da   79 (322)
T cd01338           1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT-DDPNVAFKDA   79 (322)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe-cCcHHHhCCC
Confidence            4689999999 999999999999999999     999999954  55999999999987 333334555 5678999999


Q ss_pred             CEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcchHHHHHHHHhC-CCCCcEeeecCCccH
Q 018760          107 DLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDILTYVAWKLSG-LPSNRVIGSGTNLDS  184 (350)
Q Consensus       107 DiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~~~~~~~~sg-~~~~rviG~g~~ld~  184 (350)
                      |+||+++|.|++||++|.+++..|+++++++++.|.+++ |++++|++|||+|++|+++++.+| +|++||+|+ |.||+
T Consensus        80 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~ViG~-t~LDs  158 (322)
T cd01338          80 DWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAM-TRLDH  158 (322)
T ss_pred             CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHHHHcCCCChHheEEe-hHHHH
Confidence            999999999999999999999999999999999999999 599999999999999999999995 999999999 99999


Q ss_pred             HHHHHHHHHHcCCCCcceEE-EEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcC
Q 018760          185 SRFRFLLADHLDVNAQDVQA-YIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKG  263 (350)
Q Consensus       185 ~r~~~~la~~l~v~p~~v~~-~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg  263 (350)
                      .|+++.+|+++++++++|++ +|||+||++++|+||+++++|+|+.+++.+.     +..++++.+++++++++|++.||
T Consensus       159 ~Rl~~~la~~lgv~~~~v~~~~V~GeHG~s~vp~~S~~~v~g~pl~~~~~~~-----~~~~~~i~~~v~~~g~~Ii~~kG  233 (322)
T cd01338         159 NRAKSQLAKKAGVPVTDVKNMVIWGNHSPTQYPDFTNATIGGKPAAEVINDR-----AWLEDEFIPTVQKRGAAIIKARG  233 (322)
T ss_pred             HHHHHHHHHHhCcChhHeEEEEEEeCCcccEEEehhhcEECCEeHHHhcChH-----hhHHHHHHHHHHhhHHHHHhCcC
Confidence            99999999999999999998 5699999999999999999999997765321     11267899999999999999999


Q ss_pred             CcchHHH-HHHHHHHHHHHhcC--CCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHH
Q 018760          264 YTSWAIG-YSAANLARSIIRDQ--RKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKT  340 (350)
Q Consensus       264 ~~~~~~a-~a~~~ii~ai~~~~--~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~  340 (350)
                      +++|+++ .++++++++|++|+  +.++|++++++|+||+| +++|||+||++|++||+++.+++|+++|+++|++|++.
T Consensus       234 ~t~~~~~a~a~~~iv~ail~~~~~~~i~~~sv~~~g~yg~~-~~v~~s~P~~ig~~Gv~~i~~l~L~~~E~~~l~~s~~~  312 (322)
T cd01338         234 ASSAASAANAAIDHMRDWVLGTPEGDWFSMAVPSDGSYGIP-EGLIFSFPVRSKGGGYEIVEGLEIDDFAREKIDATLAE  312 (322)
T ss_pred             CccHHHHHHHHHHHHHHHhcCCCCCeEEEEEEEccCccCCC-CCeEEEEEEEEeCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            9999999 59999999999999  59999999999999997 59999999999999999999999999999999999999


Q ss_pred             HHHHHHHhC
Q 018760          341 ILEVQSQLG  349 (350)
Q Consensus       341 i~~~~~~~~  349 (350)
                      |+++.+.+.
T Consensus       313 l~~~~~~~~  321 (322)
T cd01338         313 LLEEREAVK  321 (322)
T ss_pred             HHHHHHHhh
Confidence            999998753

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06223 malate dehydrogenase; Reviewed

Probab=100.00  E-value=8.1e-63  Score=468.43  Aligned_cols=302  Identities=37%  Similarity=0.635  Sum_probs=282.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEEEEecCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLCIVTAGA  115 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiVIi~~g~  115 (350)
                      ++||+|||||+||+++++.++..++. +|+|+|++++++++..+|+++..... ...++..++|++++++||+||+++|.
T Consensus         2 ~~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~~aDiVii~~~~   80 (307)
T PRK06223          2 RKKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIAGSDVVVITAGV   80 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHCCCCEEEECCCC
Confidence            47999999999999999999999877 99999999999999899998875422 24577777788889999999999999


Q ss_pred             CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHc
Q 018760          116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHL  195 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l  195 (350)
                      |+++|++|.+++.+|++++++++++|.+++|++++|++|||+|++|+++++++++|++||||+||.+|+.|++++||+++
T Consensus        81 p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~gt~lds~r~~~~la~~l  160 (307)
T PRK06223         81 PRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMAGVLDSARFRTFIAEEL  160 (307)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeCCCcHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHh--cCCcchHHHHHH
Q 018760          196 DVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYSA  273 (350)
Q Consensus       196 ~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~--kg~~~~~~a~a~  273 (350)
                      +++|++|+++|+|+||++++|+||+++|+|.|+.+++       +++.++++.++++++++++++.  |+++.|++|.++
T Consensus       161 ~v~~~~v~~~viGehg~s~~p~~S~~~v~g~~~~~~~-------~~~~~~~l~~~v~~~~~~ii~~~~kg~t~~~~A~~~  233 (307)
T PRK06223        161 NVSVKDVTAFVLGGHGDSMVPLVRYSTVGGIPLEDLL-------SKEKLDEIVERTRKGGAEIVGLLKTGSAYYAPAASI  233 (307)
T ss_pred             CcChhhCcccEEcCCCCcceEchhhCEECCEEHHHhC-------ChHHHHHHHHHHHHHHHHHHhhcccCChhHHHHHHH
Confidence            9999999999999999999999999999999988763       3345788999999999999996  889999999999


Q ss_pred             HHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018760          274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL  348 (350)
Q Consensus       274 ~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~  348 (350)
                      ++++++++.+++.++|++++++|+||++  +++||+||++|++||+++.+++|+++|+++|++|+++|++.++++
T Consensus       234 ~~ii~ail~~~~~~~~~~v~~~g~yg~~--~~~~s~P~~i~~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~  306 (307)
T PRK06223        234 AEMVEAILKDKKRVLPCSAYLEGEYGVK--DVYVGVPVKLGKNGVEKIIELELDDEEKAAFDKSVEAVKKLIEAL  306 (307)
T ss_pred             HHHHHHHHcCCCcEEEEEEEecCcCCCC--CeEEEeEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999994  899999999999999999999999999999999999999999875

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=100.00  E-value=4.8e-63  Score=469.10  Aligned_cols=303  Identities=39%  Similarity=0.627  Sum_probs=283.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc--cchHHHHHHHHHHhhcCC-CceEEEcCCccccCCCCEEEEec
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA--DKLRGEMLDLQHAAAFLP-RTKILASVDYAVTAGSDLCIVTA  113 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~--~~l~~~~~dl~~~~~~~~-~~~v~~t~~~~al~~aDiVIi~~  113 (350)
                      |||+|+|| |.+|++++..|+..++..+|+|+|+++  +++++.++|++|.....+ ..++..++|++++++||+||+++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~l~~aDiViita   80 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDIVIITA   80 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHHhCCCCEEEEec
Confidence            79999998 999999999999999888999999966  889999999998754332 34677677788899999999999


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHH
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLAD  193 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~  193 (350)
                      |.|+++|++|.+++..|+++++++++.|.+++|++++|+++||+|++|+++++++|+|++||||+||.||+.|++++||+
T Consensus        81 g~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~~~~~g~~~~~viG~gt~LDs~R~~~~la~  160 (309)
T cd05294          81 GVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKALKESGFDKNRVFGLGTHLDSLRFKVAIAK  160 (309)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHhcCCCHHHEeeccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHH
Q 018760          194 HLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSA  273 (350)
Q Consensus       194 ~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~  273 (350)
                      +++++|++|+++|+||||++++|+||+++|+|+|+.+++.     +.++.++++.+++++++++|++.||+++||+|.++
T Consensus       161 ~l~v~~~~v~~~viGeHg~s~~~~~S~~~i~g~~~~~~~~-----~~~~~~~~i~~~v~~~g~~i~~~kg~t~~~~a~~~  235 (309)
T cd05294         161 HFNVHISEVHTRIIGEHGDSMVPLISSTSIGGIPIKRFPE-----YKDFDVEKIVETVKNAGQNIISLKGGSEYGPASAI  235 (309)
T ss_pred             HHCcChHHeEEEEEecCCCceEeeeeecEECCEEHHHhhc-----ccHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence            9999999999999999999999999999999999988753     22445778999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q 018760          274 ANLARSIIRDQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQ  347 (350)
Q Consensus       274 ~~ii~ai~~~~~~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~  347 (350)
                      ++++++|++|++.++|++++++|+| |++  ++++|+||++|++||+++.+++|+++|+++|++|++.|++.++.
T Consensus       236 ~~ii~ail~~~~~v~~vsv~~~g~~~~~~--~~~~svP~~ig~~Gv~~i~~l~l~~~E~~~l~~s~~~i~~~~~~  308 (309)
T cd05294         236 SNLVRTIANDERRILTVSTYLEGEIDGIR--DVCIGVPVKLGKNGIEEIVPIEMDDDEREAFRKSAEIVKKYTRE  308 (309)
T ss_pred             HHHHHHHHCCCCeEEEEEEEECCccCCCC--CeEEEeEEEEcCCccEEEeCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999997 986  89999999999999999999999999999999999999998764

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=100.00  E-value=1.5e-62  Score=464.98  Aligned_cols=297  Identities=36%  Similarity=0.661  Sum_probs=277.5

Q ss_pred             EEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEEEEecCCCcC
Q 018760           40 ISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLCIVTAGARQI  118 (350)
Q Consensus        40 I~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiVIi~~g~~~~  118 (350)
                      |+|||||.||+++++.++..++. +|+|+|++++++++..+|+.+..... ...++..++|++++++||+||+++|.|++
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~dADiVIit~g~p~~   79 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVVITAGIPRK   79 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhCCCCEEEEecCCCCC
Confidence            68999999999999999999987 99999999998888888888865332 24578777788899999999999999999


Q ss_pred             ccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcCCC
Q 018760          119 AGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVN  198 (350)
Q Consensus       119 ~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~v~  198 (350)
                      +|++|.+++.+|++++++++++|+++||++++|++|||+|++++++++++++||+||||+||.+|++|+++++|++|+++
T Consensus        80 ~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlgt~lds~r~~~~la~~l~v~  159 (300)
T cd01339          80 PGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGVS  159 (300)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEecchHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhc--CCcchHHHHHHHHH
Q 018760          199 AQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK--GYTSWAIGYSAANL  276 (350)
Q Consensus       199 p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~k--g~~~~~~a~a~~~i  276 (350)
                      |++|+++|+|+||++++|+||+++|+|.|+.+++.       ++.++++.++++.++++|++.|  |+++|++|.+++++
T Consensus       160 ~~~v~~~v~G~hg~~~~~~~s~~~v~g~~~~~~~~-------~~~~~~~~~~v~~~~~~ii~~k~~g~t~~~~a~~~~~i  232 (300)
T cd01339         160 VKDVQAMVLGGHGDTMVPLPRYSTVGGIPLTELIT-------KEEIDEIVERTRNGGAEIVNLLKTGSAYYAPAAAIAEM  232 (300)
T ss_pred             ccceEEEEEeCCCCcceecceecEECCEEHHHhcC-------hHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHH
Confidence            99999999999999999999999999999987643       3347889999999999999966  89999999999999


Q ss_pred             HHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q 018760          277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQS  346 (350)
Q Consensus       277 i~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~  346 (350)
                      ++++++|++.++|++++++|+||++  ++|||+||++|++||+++.+++|+++|+++|++|++.|++.++
T Consensus       233 ~~ail~~~~~i~~~s~~~~g~yg~~--~~~~s~P~~ig~~G~~~~~~l~l~~~E~~~l~~s~~~l~~~~~  300 (300)
T cd01339         233 VEAILKDKKRVLPCSAYLEGEYGIK--DIFVGVPVVLGKNGVEKIIELDLTDEEKEAFDKSVESVKELID  300 (300)
T ss_pred             HHHHHcCCCcEEEEEEEeccccCCC--CeEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999996  7999999999999999999999999999999999999998753

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=100.00  E-value=8.2e-63  Score=464.89  Aligned_cols=288  Identities=23%  Similarity=0.399  Sum_probs=260.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc-C-C--ccccCCCCEEEEe
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS-V-D--YAVTAGSDLCIVT  112 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t-~-~--~~al~~aDiVIi~  112 (350)
                      |||+|||| |+||+++|+.|+.+++.+||+|+|++  ++++.++||+|+..   ..++..+ . +  +++++|||+||++
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~---~~~i~~~~~~~~~y~~~~daDivvit   75 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINT---PAKVTGYLGPEELKKALKGADVVVIP   75 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCC---cceEEEecCCCchHHhcCCCCEEEEe
Confidence            69999999 99999999999999999999999999  88999999999862   3466643 3 3  7999999999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchH----HHHHHHHhCCCCCcEeeecCCccHHHHH
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDIL----TYVAWKLSGLPSNRVIGSGTNLDSSRFR  188 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~----~~~~~~~sg~~~~rviG~g~~ld~~r~~  188 (350)
                      +|.|++||++|+|++..|+++++++++.|.+++|++|+|++|||+|++    +++++|.+++|++||||+ |.||++|++
T Consensus        76 aG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~-~~LDs~R~~  154 (310)
T cd01337          76 AGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGV-TTLDVVRAN  154 (310)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEee-echHHHHHH
Confidence            999999999999999999999999999999999999999999999997    888899999999999999 569999999


Q ss_pred             HHHHHHcCCCCcceEEEEEeec-CCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHh---cCC
Q 018760          189 FLLADHLDVNAQDVQAYIVGEH-GDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL---KGY  264 (350)
Q Consensus       189 ~~la~~l~v~p~~v~~~v~G~h-g~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~---kg~  264 (350)
                      +++|++++++|++|+++||||| |++++|+||++.+    +.+        ++++.++++.+++++++++|++.   ||+
T Consensus       155 ~~la~~l~v~~~~V~~~v~GeHsGds~vp~~S~~~~----~~~--------~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~  222 (310)
T cd01337         155 TFVAELLGLDPAKVNVPVIGGHSGVTILPLLSQCQP----PFT--------FDQEEIEALTHRIQFGGDEVVKAKAGAGS  222 (310)
T ss_pred             HHHHHHhCcCHHHEEEEEEecCCCCceecccccccc----ccc--------CCHHHHHHHHHHHHHHHHHHHhCccCCCC
Confidence            9999999999999999999999 8999999999964    222        23455788999999999999997   489


Q ss_pred             cchHHHHHHHHHHHHHHhc---CCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecC-CCCHHHHHHHHHHHHH
Q 018760          265 TSWAIGYSAANLARSIIRD---QRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNI-HLNQEESHRLRNSAKT  340 (350)
Q Consensus       265 ~~~~~a~a~~~ii~ai~~~---~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~-~L~~~E~~~l~~sa~~  340 (350)
                      ++||+|.++++++++|++|   ++.+++++ +.+|+ |.  +++|+|+||++|++||+++.++ +|+++|+++|++|++.
T Consensus       223 t~~~~a~a~~~iv~aIl~~~~~~~~~~~~s-~~~~~-g~--~~v~~s~P~~ig~~Gv~~i~~l~~L~~~E~~~l~~S~~~  298 (310)
T cd01337         223 ATLSMAYAGARFANSLLRGLKGEKGVIECA-YVESD-VT--EAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPE  298 (310)
T ss_pred             cchhHHHHHHHHHHHHHHhcCCCcceEEEE-EEecc-CC--CceEEEEEEEEeCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999965   55788887 55665 65  4899999999999999999999 6999999999999999


Q ss_pred             HHHHHHH
Q 018760          341 ILEVQSQ  347 (350)
Q Consensus       341 i~~~~~~  347 (350)
                      |++.+++
T Consensus       299 i~~~~~~  305 (310)
T cd01337         299 LKKNIEK  305 (310)
T ss_pred             HHHHHhh
Confidence            9988763

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=7.8e-63  Score=465.82  Aligned_cols=288  Identities=22%  Similarity=0.376  Sum_probs=262.4

Q ss_pred             eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEE-c-CC--ccccCCCCEEEEec
Q 018760           39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA-S-VD--YAVTAGSDLCIVTA  113 (350)
Q Consensus        39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~-t-~~--~~al~~aDiVIi~~  113 (350)
                      ||+|||| |+||+++|+.|+.+++++||+|+|+++  +++.++||+|..   ...+++. + .+  +++++|||+||+++
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a~DL~~~~---~~~~i~~~~~~~~~~~~~~daDivvita   75 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVAADLSHIP---TAASVKGFSGEEGLENALKGADVVVIPA   75 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEEchhhcCC---cCceEEEecCCCchHHHcCCCCEEEEeC
Confidence            7999999 999999999999999989999999988  678999999965   2456775 2 23  78999999999999


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch----HHHHHHHHhCCCCCcEeeecCCccHHHHHH
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI----LTYVAWKLSGLPSNRVIGSGTNLDSSRFRF  189 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~----~~~~~~~~sg~~~~rviG~g~~ld~~r~~~  189 (350)
                      |.|++||++|++++..|+++++++++.|.+++|++++|++|||+|+    +++++++.+|+|++||||+|+ ||++|+++
T Consensus        76 G~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~-LDsaR~r~  154 (312)
T TIGR01772        76 GVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTT-LDIVRANT  154 (312)
T ss_pred             CCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeec-chHHHHHH
Confidence            9999999999999999999999999999999999999999999998    888999999999999999965 99999999


Q ss_pred             HHHHHcCCCCcceEEEEEeecCC-ceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHh---cCCc
Q 018760          190 LLADHLDVNAQDVQAYIVGEHGD-SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL---KGYT  265 (350)
Q Consensus       190 ~la~~l~v~p~~v~~~v~G~hg~-~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~---kg~~  265 (350)
                      ++|++++++|++|+++||||||+ +++|+||++++  .|.          ++++.++++.+++++++++|++.   ||++
T Consensus       155 ~la~~l~v~~~~v~~~ViGeHg~~s~vp~~S~~~~--~~~----------~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t  222 (312)
T TIGR01772       155 FVAELKGKDPMEVNVPVIGGHSGETIIPLISQCPG--KVL----------FTEDQLEALIHRIQNAGTEVVKAKAGAGSA  222 (312)
T ss_pred             HHHHHhCCCHHHeEEEEEEecCCCccccccccccc--cCC----------CCHHHHHHHHHHHHHHHHHHHhCccCCCCh
Confidence            99999999999999999999987 99999999983  222          33445788999999999999996   5889


Q ss_pred             chHHHHHHHHHHHHHHh---cCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecC-CCCHHHHHHHHHHHHHH
Q 018760          266 SWAIGYSAANLARSIIR---DQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNI-HLNQEESHRLRNSAKTI  341 (350)
Q Consensus       266 ~~~~a~a~~~ii~ai~~---~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~-~L~~~E~~~l~~sa~~i  341 (350)
                      +||+|.++++++++|++   |++.++|++ +.+|+||..  ++|||+||++|++||+++.++ +|+++|+++|++|++.|
T Consensus       223 ~~~ia~a~~~iv~ail~~~~d~~~v~~~s-~~~g~yg~~--~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i  299 (312)
T TIGR01772       223 TLSMAFAGARFVLSLVRGLKGEEGVVECA-YVESDGVTE--ATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPEL  299 (312)
T ss_pred             hHHHHHHHHHHHHHHHHhhCCCccEEEEE-EEccCCCcC--ceEEEEEEEEcCCeeEEEEccCCCCHHHHHHHHHHHHHH
Confidence            99999999999999994   788899965 788999874  899999999999999999999 99999999999999999


Q ss_pred             HHHHHH
Q 018760          342 LEVQSQ  347 (350)
Q Consensus       342 ~~~~~~  347 (350)
                      ++.+++
T Consensus       300 ~~~~~~  305 (312)
T TIGR01772       300 KKNIKK  305 (312)
T ss_pred             HHHHHH
Confidence            998764

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=5.5e-63  Score=470.17  Aligned_cols=303  Identities=20%  Similarity=0.297  Sum_probs=273.9

Q ss_pred             eEEEEcC-ChhHHHHHHHHHhcCCCC-----eEEEEeCCcc--chHHHHHHHHHHhhcCCCceEEEcCC-ccccCCCCEE
Q 018760           39 KISVIGT-GNVGMAIAQTILTQDFVE-----ELALVDAKAD--KLRGEMLDLQHAAAFLPRTKILASVD-YAVTAGSDLC  109 (350)
Q Consensus        39 KI~IIGA-G~vG~~~a~~l~~~~~~~-----ev~L~D~~~~--~l~~~~~dl~~~~~~~~~~~v~~t~~-~~al~~aDiV  109 (350)
                      ||+|||| |.||+++++.|+..++++     +|+|+|++++  ++++.++|+.|+..... ..+..+++ +++++|||+|
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~-~~~~~~~~~~~~~~~aDiV   79 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLL-DGVVPTHDPAVAFTDVDVA   79 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhc-CceeccCChHHHhCCCCEE
Confidence            6999999 999999999999998875     6999999654  58999999999873222 23443434 7999999999


Q ss_pred             EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHH
Q 018760          110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFR  188 (350)
Q Consensus       110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~  188 (350)
                      |+++|.|++++++|.+++..|+++++++++.|.+++ |++++|++|||+|++|+++++++|.+|+|+||+||.||++|++
T Consensus        80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~~~sg~~~~~vig~gt~LDs~R~r  159 (324)
T TIGR01758        80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRAL  159 (324)
T ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCcceEEEeeehHHHHHH
Confidence            999999999999999999999999999999999995 9999999999999999999999987888899999999999999


Q ss_pred             HHHHHHcCCCCcceE-EEEEeecCCceeeeecceeec-C---ccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcC
Q 018760          189 FLLADHLDVNAQDVQ-AYIVGEHGDSSVALWSSISVG-G---VPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKG  263 (350)
Q Consensus       189 ~~la~~l~v~p~~v~-~~v~G~hg~~~vp~~S~~~v~-g---~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg  263 (350)
                      ++||++++++|++|+ ++||||||++++|+||+++|+ |   +|+.+++.+.. |    ..+++.+++++++++|++.||
T Consensus       160 ~~la~~l~v~~~~V~~~~V~GeHG~s~v~~~S~~~v~~g~~~~pl~~~~~~~~-~----~~~~i~~~v~~~g~~Ii~~k~  234 (324)
T TIGR01758       160 AQVAERAGVPVSDVKNVIIWGNHSSTQYPDVNHATVTKGGKQKPVREAIKDDA-Y----LDGEFITTVQQRGAAIIRARK  234 (324)
T ss_pred             HHHHHHhCCChhhceEeEEEECCCCCcccccccceecCCCCccCHHHHhcchh-h----HHHHHHHHHHhCHHHHHhccC
Confidence            999999999999996 599999999999999999999 9   99988764311 1    257889999999999999765


Q ss_pred             -CcchHHHHHHHHHHHHHH--hcCCCeEEEEEEeccc-cCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHH
Q 018760          264 -YTSWAIGYSAANLARSII--RDQRKIHPVSVLAKGF-YGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAK  339 (350)
Q Consensus       264 -~~~~~~a~a~~~ii~ai~--~~~~~v~~v~v~~~g~-~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~  339 (350)
                       ++.|++|.++++++++|+  .|++.++|||++++|+ ||+| .++|||+||++|++||+.+.+++|+++|+++|++|++
T Consensus       235 ~~t~~~ia~~~~~i~~ai~~~~~~~~i~~vs~~~~g~~yg~~-~~v~~s~P~~ig~g~~~~i~el~L~~~E~~~l~~s~~  313 (324)
T TIGR01758       235 LSSALSAAKAAVDQMHDWVLGTPEGTFVSMGVYSDGSPYGVP-KGLIFSFPVTCKNGEWKIVEGLCVDDSSRKKLALTAK  313 (324)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeecCCcccCCC-CceEEEEEEEEcCCeEEEecCCCCCHHHHHHHHHHHH
Confidence             889999999999999999  7899999999999999 9996 5899999999999999998889999999999999999


Q ss_pred             HHHHHHHHh
Q 018760          340 TILEVQSQL  348 (350)
Q Consensus       340 ~i~~~~~~~  348 (350)
                      .|++.++.+
T Consensus       314 ~lk~~~~~~  322 (324)
T TIGR01758       314 ELEEERDEA  322 (324)
T ss_pred             HHHHHHHHh
Confidence            999998754

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PLN00135 malate dehydrogenase

Probab=100.00  E-value=1.8e-61  Score=455.59  Aligned_cols=277  Identities=21%  Similarity=0.321  Sum_probs=255.5

Q ss_pred             eEEEEeCCc--cchHHHHHHHHHHhhcCCCceEEEcCC-ccccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhh
Q 018760           64 ELALVDAKA--DKLRGEMLDLQHAAAFLPRTKILASVD-YAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPP  140 (350)
Q Consensus        64 ev~L~D~~~--~~l~~~~~dl~~~~~~~~~~~v~~t~~-~~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~  140 (350)
                      .++|+|+++  +++++.++||+|+...... .+..+++ +++++|||+||+++|.|++||++|.+++..|+++++++++.
T Consensus        15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~-~i~~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~~~   93 (309)
T PLN00135         15 ILHMLDIPPAAEALNGVKMELIDAAFPLLK-GVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASA   93 (309)
T ss_pred             EEEEecCcccccchhhHHHHHHhhhHHhcC-CcEecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            799999999  9999999999999832222 4554556 89999999999999999999999999999999999999999


Q ss_pred             hhcc-CCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcCCCCcce-EEEEEeecCCceeeee
Q 018760          141 LVKY-SPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDV-QAYIVGEHGDSSVALW  218 (350)
Q Consensus       141 i~~~-~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~v~p~~v-~~~v~G~hg~~~vp~~  218 (350)
                      |.++ +|++++|++|||+|++|+++++.+++|++|+||+||.||++|++++||++++++|++| +++||||||++++|+|
T Consensus        94 i~~~~~p~aivivvsNPvDv~t~~~~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~s~v~~~  173 (309)
T PLN00135         94 LEKHAAPDCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSSTQYPDV  173 (309)
T ss_pred             HHHhcCCCeEEEEeCCcHHHHHHHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCCceeecc
Confidence            9996 8999999999999999999999999999999999999999999999999999999999 6899999999999999


Q ss_pred             cceee----cCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHh-cCCcchHHHHHHHHHHHHHHh--cCCCeEEEE
Q 018760          219 SSISV----GGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL-KGYTSWAIGYSAANLARSIIR--DQRKIHPVS  291 (350)
Q Consensus       219 S~~~v----~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~-kg~~~~~~a~a~~~ii~ai~~--~~~~v~~v~  291 (350)
                      |+++|    +|+|+.+++.+.. |    ..+++.+++++++++|++. ||+++||+|.++++++++|++  +++.++|+|
T Consensus       174 S~a~v~~~~~g~p~~e~~~~~~-~----~~~~i~~~v~~~g~~Ii~~~kg~t~~~ia~a~~~iv~ai~~~~~~~~v~~vs  248 (309)
T PLN00135        174 NHATVKTPSGEKPVRELVADDA-W----LNGEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPEGTWVSMG  248 (309)
T ss_pred             ccceEecCCCCcCHHHHhCchh-h----HHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHhCCcCCeEEEEE
Confidence            99999    9999988753211 1    2578999999999999997 789999999999999999999  679999999


Q ss_pred             EEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q 018760          292 VLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQ  347 (350)
Q Consensus       292 v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~  347 (350)
                      ++++|+||+| +++|||+||+++++||+.+.+++|+++|+++|++|++.|+++++.
T Consensus       249 v~~~g~YGi~-~~v~~s~P~vlg~~gve~v~~l~L~~~E~~~l~~S~~~lk~~~~~  303 (309)
T PLN00135        249 VYSDGSYGVP-PGLIYSFPVTCEKGEWSIVQGLSIDEFSRKKMDATAKELKEEKEL  303 (309)
T ss_pred             EEecCccCCc-CCeEEEEEEEEECCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999996 589999999999999999999999999999999999999998875

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=100.00  E-value=4.4e-61  Score=457.89  Aligned_cols=304  Identities=21%  Similarity=0.306  Sum_probs=273.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCC-----eEEEEeCCc--cchHHHHHHHHHHhhcCCCceEEEcCC-ccccCCC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVE-----ELALVDAKA--DKLRGEMLDLQHAAAFLPRTKILASVD-YAVTAGS  106 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~-----ev~L~D~~~--~~l~~~~~dl~~~~~~~~~~~v~~t~~-~~al~~a  106 (350)
                      ++.||+|+|| |.+|+++++.|+..++++     +|+|+|+++  +++++.++|+.|+...... ++..+++ +++++||
T Consensus         1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~-~~~~~~~~~~~l~~a   79 (325)
T cd01336           1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLK-SVVATTDPEEAFKDV   79 (325)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccC-CceecCCHHHHhCCC
Confidence            4689999999 999999999999988764     999999965  5578888999998632211 4443456 4899999


Q ss_pred             CEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcchHHHHHHHHh-CCCCCcEeeecCCccH
Q 018760          107 DLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDILTYVAWKLS-GLPSNRVIGSGTNLDS  184 (350)
Q Consensus       107 DiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~~~~~~~~s-g~~~~rviG~g~~ld~  184 (350)
                      |+||+++|.+++++++|.+++..|+++++++++.|.+++ |++++|++|||+|++|+++++.+ ++|+++ ||+||.||+
T Consensus        80 DiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~~~~~~~~~-ig~gt~LDs  158 (325)
T cd01336          80 DVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALILLKYAPSIPKEN-FTALTRLDH  158 (325)
T ss_pred             CEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHHHHcCCCCHHH-EEeeehHHH
Confidence            999999999999999999999999999999999999996 89999999999999999999996 677777 999999999


Q ss_pred             HHHHHHHHHHcCCCCcceEE-EEEeecCCceeeeecceeec----CccccccchhhhccCCHHHHHHHHHHHHhhHHHHH
Q 018760          185 SRFRFLLADHLDVNAQDVQA-YIVGEHGDSSVALWSSISVG----GVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVI  259 (350)
Q Consensus       185 ~r~~~~la~~l~v~p~~v~~-~v~G~hg~~~vp~~S~~~v~----g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~  259 (350)
                      .|+++++|++++++|++|+. +||||||++++|+||+++|+    |+|+.+++.+.. |    ..+++.+++++++++|+
T Consensus       159 ~R~r~~la~~l~v~~~~v~~~~V~GeHG~s~~~~~S~~~v~~~~~g~~~~~~~~~~~-~----~~~~i~~~v~~~g~~Ii  233 (325)
T cd01336         159 NRAKSQIALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVELNGKGKPAREAVKDDA-W----LNGEFISTVQKRGAAVI  233 (325)
T ss_pred             HHHHHHHHHHhCcChhhceEeEEEEcCCCCeeeccccceeecCCCCccHHHHhcccc-h----hHHHHHHHHHhhHHHHH
Confidence            99999999999999999975 59999999999999999999    999988764321 1    25789999999999999


Q ss_pred             Hh-cCCcchHHHHHHHHHHHHHHhcC--CCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHH
Q 018760          260 SL-KGYTSWAIGYSAANLARSIIRDQ--RKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN  336 (350)
Q Consensus       260 ~~-kg~~~~~~a~a~~~ii~ai~~~~--~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~  336 (350)
                      +. +|++.|++|.++++++++|++|+  +.++|++++++|+||++ +++|||+||++|++||+++.+++|+++|+++|++
T Consensus       234 ~~~~g~t~~~~a~~~~~i~~ail~~~~~~~v~~vs~~~~g~yg~~-~~v~~s~P~~ig~~Gv~~i~~~~L~~~E~~~l~~  312 (325)
T cd01336         234 KARKLSSAMSAAKAICDHVHDWWFGTPEGEFVSMGVYSDGSYGVP-EGLIFSFPVTCKNGKWKIVQGLSIDDFSREKIDA  312 (325)
T ss_pred             HccccchHHHHHHHHHHHHHHHHcCCCCCeEEEEEEecCCCcCCC-CceEEEEEEEEeCCEEEEecCCCCCHHHHHHHHH
Confidence            96 66999999999999999999984  89999999999999996 5999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 018760          337 SAKTILEVQSQ  347 (350)
Q Consensus       337 sa~~i~~~~~~  347 (350)
                      |++.|+++++.
T Consensus       313 s~~~l~~e~~~  323 (325)
T cd01336         313 TAKELVEEKET  323 (325)
T ss_pred             HHHHHHHHHHh
Confidence            99999999874

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05295 MDH_like Malate dehydrogenase-like

Probab=100.00  E-value=2.6e-60  Score=463.45  Aligned_cols=303  Identities=15%  Similarity=0.236  Sum_probs=272.6

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCC-----eEEEEeC--CccchHHHHHHHHHHhh-cCCCceEEEcCCccccC
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVE-----ELALVDA--KADKLRGEMLDLQHAAA-FLPRTKILASVDYAVTA  104 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~-----ev~L~D~--~~~~l~~~~~dl~~~~~-~~~~~~v~~t~~~~al~  104 (350)
                      ++++.+|+|.|| |.+|+++.+.|++..+++     .|+|+|+  +++++++.++||+|+.. +.....++ ++++++++
T Consensus       120 ~~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~-~~~~ea~~  198 (452)
T cd05295         120 KINPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT-TDLDVAFK  198 (452)
T ss_pred             CCCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE-ECCHHHhC
Confidence            445789999999 999999999999987653     6999999  78999999999999973 33334555 45679999


Q ss_pred             CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCC--CeEEEEEcCCcchHHHHHHHHh-CCCCCcEeeecCC
Q 018760          105 GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSP--DCILLIVANPVDILTYVAWKLS-GLPSNRVIGSGTN  181 (350)
Q Consensus       105 ~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p--~a~viv~tNP~~~~~~~~~~~s-g~~~~rviG~g~~  181 (350)
                      |||+||+++|.|+++|++|.|++..|++|++++++.|.+++|  ++++|++|||+|++|+++++++ ++|++||+|+|| 
T Consensus       199 daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~~k~apgiP~~rVig~gt-  277 (452)
T cd05295         199 DAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSILIKYAPSIPRKNIIAVAR-  277 (452)
T ss_pred             CCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEecc-
Confidence            999999999999999999999999999999999999999999  8999999999999999999999 999999999988 


Q ss_pred             ccHHHHHHHHHHHcCCCCcce-EEEEEeecCCceeeeecceeecC------------ccccccchhhhccCCHHHHHHHH
Q 018760          182 LDSSRFRFLLADHLDVNAQDV-QAYIVGEHGDSSVALWSSISVGG------------VPILSFLEKQQIAYEKETLESIH  248 (350)
Q Consensus       182 ld~~r~~~~la~~l~v~p~~v-~~~v~G~hg~~~vp~~S~~~v~g------------~p~~~~~~~~~~~~~~~~~~~i~  248 (350)
                      ++++|++++||+++|++|++| +++||||||+++||+||+++|+|            +|+.+++.+. .|+.    +++.
T Consensus       278 lds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~-~w~~----~~~~  352 (452)
T cd05295         278 LQENRAKALLARKLNVNSAGIKDVIVWGNIGGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDS-KWIN----GEFV  352 (452)
T ss_pred             hHHHHHHHHHHHHhCcCHHHceeeEEEEccCCceeeeeeEEEEcccccccccccccCccHHHHhcch-hhhH----HHHH
Confidence            669999999999999999999 56999999999999999999988            8988876432 2333    4566


Q ss_pred             HHHHhhHHHHHHhcCCcchHHHHHHHHHHHHHHhcC--CCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCC
Q 018760          249 KEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQ--RKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHL  326 (350)
Q Consensus       249 ~~v~~~~~~v~~~kg~~~~~~a~a~~~ii~ai~~~~--~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L  326 (350)
                      +.+++++.   .+||++.||+|.|+++++++|++|+  +.++||+++++|+||+| .+++||+||+++++||+.+.+++|
T Consensus       353 ~~v~~rg~---~rkgsT~~siA~A~~~iv~ail~~t~~~~ilsvsv~sdG~YGip-~gv~~S~Pviig~~Gve~V~~L~L  428 (452)
T cd05295         353 ATLKSLSS---SLNHEAAISPAHAIATTLSYWYHGSPPGEIFSLGVISEGWYGIP-EGIVFSMPVKFQNGSWEVVTDLEL  428 (452)
T ss_pred             HHHHHHHH---hccCChHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeeccccCCc-CCEEEEEEEEEeCCeEEEEeCCCC
Confidence            66777777   6789999999999999999999997  68999999999999997 599999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHH
Q 018760          327 NQEESHRLRNSAKTILEVQSQ  347 (350)
Q Consensus       327 ~~~E~~~l~~sa~~i~~~~~~  347 (350)
                      +++|+++|++|+++|.++.+.
T Consensus       429 ~e~E~~kL~~S~~eL~~E~~~  449 (452)
T cd05295         429 SEILREVLKRITSDLIQEKLV  449 (452)
T ss_pred             CHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999998764

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00325 malate dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-59  Score=445.70  Aligned_cols=290  Identities=27%  Similarity=0.399  Sum_probs=264.4

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC----ccccCCCCEE
Q 018760           35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD----YAVTAGSDLC  109 (350)
Q Consensus        35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~----~~al~~aDiV  109 (350)
                      .++.||+|||| |+||+++++.|+..++.+||+|+|+  +++++.++||+|...   ...+...+|    +++++|||+|
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di--~~~~g~a~Dl~~~~~---~~~v~~~td~~~~~~~l~gaDvV   80 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI--VGAPGVAADLSHIDT---PAKVTGYADGELWEKALRGADLV   80 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec--CCCcccccchhhcCc---CceEEEecCCCchHHHhCCCCEE
Confidence            35569999999 9999999999999898899999999  567888999999764   345654434    6899999999


Q ss_pred             EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHH----HHhCCCCCcEeeecCCccHH
Q 018760          110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAW----KLSGLPSNRVIGSGTNLDSS  185 (350)
Q Consensus       110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~----~~sg~~~~rviG~g~~ld~~  185 (350)
                      |+++|.+++++++|.+++..|+++++++++.|.+++|++++++.|||+|+++++++    +.+++||+||||+|+ ||++
T Consensus        81 VitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~-LDs~  159 (321)
T PTZ00325         81 LICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTT-LDVV  159 (321)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechh-HHHH
Confidence            99999999999999999999999999999999999999999999999999999985    889999999999975 9999


Q ss_pred             HHHHHHHHHcCCCCcceEEEEEeecCC-ceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhc--
Q 018760          186 RFRFLLADHLDVNAQDVQAYIVGEHGD-SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK--  262 (350)
Q Consensus       186 r~~~~la~~l~v~p~~v~~~v~G~hg~-~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~k--  262 (350)
                      |+++++|++++++|++|+++||||||+ ++||+||++   |.|+           ++++++++.+++++++++|++.|  
T Consensus       160 R~r~~la~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~---g~~l-----------~~~~~~~i~~~v~~~g~~Ii~~k~~  225 (321)
T PTZ00325        160 RARKFVAEALGMNPYDVNVPVVGGHSGVTIVPLLSQT---GLSL-----------PEEQVEQITHRVQVGGDEVVKAKEG  225 (321)
T ss_pred             HHHHHHHHHhCcChhheEEEEEeecCCcccccchhcc---CCCC-----------CHHHHHHHHHHHHHHHHHHHhcccC
Confidence            999999999999999999999999999 899999999   7775           23457889999999999999966  


Q ss_pred             -CCcchHHHHHHHHHHHHHHhc---CCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeec-CCCCHHHHHHHHHH
Q 018760          263 -GYTSWAIGYSAANLARSIIRD---QRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTN-IHLNQEESHRLRNS  337 (350)
Q Consensus       263 -g~~~~~~a~a~~~ii~ai~~~---~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~-~~L~~~E~~~l~~s  337 (350)
                       |+++||+|.++++++++|++|   ++.++|++ +.+|+||++  ++|+|+||++|++|++++.+ ++|+++|+++|++|
T Consensus       226 kg~t~~g~a~a~~~i~~ail~~~~~~~~v~~~~-~~~g~yg~~--~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S  302 (321)
T PTZ00325        226 AGSATLSMAYAAAEWSTSVLKALRGDKGIVECA-FVESDMRPE--CPFFSSPVELGKEGVERVLPIGPLNAYEEELLEAA  302 (321)
T ss_pred             CCCchHHHHHHHHHHHHHHHhhcCCCCCeEEEE-EEecCCCCC--CeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHH
Confidence             799999999999999999965   88899995 888999974  89999999999999999999 89999999999999


Q ss_pred             HHHHHHHHHH
Q 018760          338 AKTILEVQSQ  347 (350)
Q Consensus       338 a~~i~~~~~~  347 (350)
                      ++.|++.+++
T Consensus       303 ~~~i~~~~~~  312 (321)
T PTZ00325        303 VPDLKKNIEK  312 (321)
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>TIGR01756 LDH_protist lactate dehydrogenase

Probab=100.00  E-value=2.3e-58  Score=435.56  Aligned_cols=275  Identities=21%  Similarity=0.319  Sum_probs=247.6

Q ss_pred             eEEEEeCCc--cchHHHHHHHHHHhhcCC-CceEEEcCCc-cccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHh
Q 018760           64 ELALVDAKA--DKLRGEMLDLQHAAAFLP-RTKILASVDY-AVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIP  139 (350)
Q Consensus        64 ev~L~D~~~--~~l~~~~~dl~~~~~~~~-~~~v~~t~~~-~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~  139 (350)
                      .|+|+|+++  +++++.++||+|+. +.. ...+. ++++ ++++|||+||+++|.|++||++|.+++..|+++++++++
T Consensus        17 ~l~L~D~~~~~~~a~g~a~Dl~d~~-~~~~~~~i~-~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~   94 (313)
T TIGR01756        17 CLHLLEIPPALNRLEALAMELEDCA-FPNLAGTIV-TTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGE   94 (313)
T ss_pred             EEEEecCCCccchhHhHHHHHHHhc-cccCCceEe-cCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence            799999988  99999999999998 432 33444 5677 699999999999999999999999999999999999999


Q ss_pred             hhhccCCC-eEEEEEcCCcchHHHHH-HHHhCCCCCcEeeecCCccHHHHHHHHHHHcCCCCcceEEE-EEeecCCceee
Q 018760          140 PLVKYSPD-CILLIVANPVDILTYVA-WKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAY-IVGEHGDSSVA  216 (350)
Q Consensus       140 ~i~~~~p~-a~viv~tNP~~~~~~~~-~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~v~p~~v~~~-v~G~hg~~~vp  216 (350)
                      .|.+++|+ +++|++|||+|++|+++ ++.+|+|++ +||+||.||++|++++||++++++|++|+.+ ||||||++++|
T Consensus        95 ~i~~~a~~~~ivivvtNPvDv~t~v~~~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeHG~s~vp  173 (313)
T TIGR01756        95 ALSEYAKPTVKVLVIGNPVNTNCLVAMLHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAESMVA  173 (313)
T ss_pred             HHHhhCCCCeEEEEeCCchHHHHHHHHHHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECCCCceee
Confidence            99999955 78999999999999999 699999998 9999999999999999999999999999765 99999999999


Q ss_pred             eecceee--cCccccccchhhhccCCHH-HHHHHHHHHHhhHHHHHHhcCCcchHHH-HHHHHHHHHHHh--cCCCeEEE
Q 018760          217 LWSSISV--GGVPILSFLEKQQIAYEKE-TLESIHKEVVDSAYEVISLKGYTSWAIG-YSAANLARSIIR--DQRKIHPV  290 (350)
Q Consensus       217 ~~S~~~v--~g~p~~~~~~~~~~~~~~~-~~~~i~~~v~~~~~~v~~~kg~~~~~~a-~a~~~ii~ai~~--~~~~v~~v  290 (350)
                      +||+++|  +|.|+..+-     .++++ .++++.+++++++++|++.||+++|+++ .++++++++|++  +++.++|+
T Consensus       174 ~~S~~~V~~~G~~~~~~~-----~~~~~~~~~~i~~~v~~~g~~Ii~~kg~t~~~~~a~ai~~iv~ail~~~~~~~i~pv  248 (313)
T TIGR01756       174 DLTHAEFTKNGKHQKVFD-----ELCRDYPEPDFFEVIAQRAWKILEMRGFTSAASPVKASLQHMKAWLFGTRPGEVLSM  248 (313)
T ss_pred             cccccEEecCCeehhHhh-----hcCcHhHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence            9999999  998865431     12221 3678999999999999999999999977 699999999999  66799999


Q ss_pred             EEEec--cccCCCCCCeEEEEeEEEcCCceEEeec-CCCCHHHHHHHHHHHHHHHHHHHH
Q 018760          291 SVLAK--GFYGIDGGDVFLSLPAQLGRGGVLGVTN-IHLNQEESHRLRNSAKTILEVQSQ  347 (350)
Q Consensus       291 ~v~~~--g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~-~~L~~~E~~~l~~sa~~i~~~~~~  347 (350)
                      |++++  |+||++ +++++|+||++|++|++++.+ ++|+++|+++|++|++.|+++.+.
T Consensus       249 sv~l~~~g~YGi~-~~v~~s~P~vig~~Gv~~ive~l~L~~~E~~~l~~Sa~~l~~e~~~  307 (313)
T TIGR01756       249 GIPVPEGNPYGIK-PGVIFSFPCTVDEDGKVHVVENFELNPWLKTKLAQTEKDLFEERET  307 (313)
T ss_pred             EEEecCCCccCCC-CCEEEEEEEEEeCCceEEEcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99885  399996 589999999999999999998 999999999999999999998764

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.

>PLN00106 malate dehydrogenase

Probab=100.00  E-value=8.2e-58  Score=433.17  Aligned_cols=291  Identities=24%  Similarity=0.374  Sum_probs=260.2

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEE-cCC---ccccCCCCEE
Q 018760           35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA-SVD---YAVTAGSDLC  109 (350)
Q Consensus        35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~-t~~---~~al~~aDiV  109 (350)
                      ..+.||+|||| |+||+++++.|+.+++.+||+|+|+++  +++.++||+|+..   ..++.. +++   +++++|||+|
T Consensus        16 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~~~---~~~i~~~~~~~d~~~~l~~aDiV   90 (323)
T PLN00106         16 APGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHINT---PAQVRGFLGDDQLGDALKGADLV   90 (323)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhCCc---CceEEEEeCCCCHHHHcCCCCEE
Confidence            34569999999 999999999999999999999999988  7788999999874   234442 233   5889999999


Q ss_pred             EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc----hHHHHHHHHhCCCCCcEeeecCCccHH
Q 018760          110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD----ILTYVAWKLSGLPSNRVIGSGTNLDSS  185 (350)
Q Consensus       110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~----~~~~~~~~~sg~~~~rviG~g~~ld~~  185 (350)
                      |+++|.|++||++|.+++..|+++++++++.+.+++|+++++++|||+|    ++++++++.+++||+|+||+| .||++
T Consensus        91 VitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~-~LDs~  169 (323)
T PLN00106         91 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVT-TLDVV  169 (323)
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEe-cchHH
Confidence            9999999999999999999999999999999999999999999999999    899999999999999999995 59999


Q ss_pred             HHHHHHHHHcCCCCcceEEEEEeecCC-ceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHh---
Q 018760          186 RFRFLLADHLDVNAQDVQAYIVGEHGD-SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL---  261 (350)
Q Consensus       186 r~~~~la~~l~v~p~~v~~~v~G~hg~-~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~---  261 (350)
                      |+++++|++++++|.+|+++|+|+||+ +++|+||++.+    ..+        +++++++++.+++++++++|++.   
T Consensus       170 Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~----~~~--------~~~~~~~~i~~~v~~~g~~Ii~~k~~  237 (323)
T PLN00106        170 RANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATP----KVS--------FTDEEIEALTKRIQNGGTEVVEAKAG  237 (323)
T ss_pred             HHHHHHHHHhCCChhheEEEEEEeCCCccEeeehhccee----ccc--------CCHHHHHHHHHHHHHHHHHHHhCccC
Confidence            999999999999999999999999965 99999999953    221        34455889999999999999996   


Q ss_pred             cCCcchHHHHHHHHHHHHHHhc---CCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecC-CCCHHHHHHHHHH
Q 018760          262 KGYTSWAIGYSAANLARSIIRD---QRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNI-HLNQEESHRLRNS  337 (350)
Q Consensus       262 kg~~~~~~a~a~~~ii~ai~~~---~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~-~L~~~E~~~l~~s  337 (350)
                      ||+++||+|.++++++++|++|   ++.++|++ +.+++|  + +++|||+||+||++|++++.++ +|+++|+++|++|
T Consensus       238 kg~t~~~~a~a~~~ii~ail~~~~~~~~v~~~s-~~~~~~--~-~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S  313 (323)
T PLN00106        238 AGSATLSMAYAAARFADACLRGLNGEADVVECS-YVQSEV--T-ELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEAL  313 (323)
T ss_pred             CCCchHHHHHHHHHHHHHHHhccCCCceEEEEE-EECccc--C-CceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHH
Confidence            5899999999999999999995   66899999 556554  3 2499999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHH
Q 018760          338 AKTILEVQSQ  347 (350)
Q Consensus       338 a~~i~~~~~~  347 (350)
                      ++.|++.+++
T Consensus       314 ~~~i~~~~~~  323 (323)
T PLN00106        314 KPELKASIEK  323 (323)
T ss_pred             HHHHHHHhhC
Confidence            9999998763

>PRK05086 malate dehydrogenase; Provisional

Probab=100.00  E-value=1.8e-57  Score=431.08  Aligned_cols=288  Identities=25%  Similarity=0.389  Sum_probs=257.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHh-cCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEE--cCC-ccccCCCCEEEEe
Q 018760           38 TKISVIGT-GNVGMAIAQTILT-QDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA--SVD-YAVTAGSDLCIVT  112 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~-~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~--t~~-~~al~~aDiVIi~  112 (350)
                      |||+|||| |.+|+++++.|.. .+...+|+|+|+++. .++.++|++|..   ....+..  +++ +++++++|+||+|
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~~~---~~~~i~~~~~~d~~~~l~~~DiVIit   76 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSHIP---TAVKIKGFSGEDPTPALEGADVVLIS   76 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-CcceehhhhcCC---CCceEEEeCCCCHHHHcCCCCEEEEc
Confidence            79999999 9999999998866 466789999999854 567778998742   1234553  345 5889999999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHH----HHhCCCCCcEeeecCCccHHHHH
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAW----KLSGLPSNRVIGSGTNLDSSRFR  188 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~----~~sg~~~~rviG~g~~ld~~r~~  188 (350)
                      +|.+++++++|.+++..|+++++++++.|++++|+++++++|||+|+||++++    |++|+|++||||+| .||++|++
T Consensus        77 aG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~-~Lds~R~~  155 (312)
T PRK05086         77 AGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVT-TLDVIRSE  155 (312)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeee-cHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999987    89999999999995 59999999


Q ss_pred             HHHHHHcCCCCcceEEEEEeecCC-ceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhc---CC
Q 018760          189 FLLADHLDVNAQDVQAYIVGEHGD-SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK---GY  264 (350)
Q Consensus       189 ~~la~~l~v~p~~v~~~v~G~hg~-~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~k---g~  264 (350)
                      +++|++++++|++|+++||||||+ +++|+||++  +|.|+           +++.++++.+++++++++|++.|   |+
T Consensus       156 ~~ia~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~--~g~~l-----------~~~~~~~i~~~v~~~g~~ii~~k~~~g~  222 (312)
T PRK05086        156 TFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV--PGVSF-----------TEQEVADLTKRIQNAGTEVVEAKAGGGS  222 (312)
T ss_pred             HHHHHHhCCChhheEEEEEEecCCCceecccccc--CCccC-----------CHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence            999999999999999999999977 999999999  88776           23447889999999999999987   89


Q ss_pred             cchHHHHHHHHHHHHHHhc---CCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecC-CCCHHHHHHHHHHHHH
Q 018760          265 TSWAIGYSAANLARSIIRD---QRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNI-HLNQEESHRLRNSAKT  340 (350)
Q Consensus       265 ~~~~~a~a~~~ii~ai~~~---~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~-~L~~~E~~~l~~sa~~  340 (350)
                      ++||+|.++++++++|+++   ++.++|++ +.+|+ |.  +++|||+||++|++|++++.++ +|+++|+++|++|++.
T Consensus       223 t~~~~a~a~~~~v~ai~~~~~~~~~v~~~~-~~~~~-g~--~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~  298 (312)
T PRK05086        223 ATLSMGQAAARFGLSLVRALQGEQGVVECA-YVEGD-GK--YARFFAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLDT  298 (312)
T ss_pred             chhhHHHHHHHHHHHHHhcCCCCCcEEEEE-EEecc-CC--cceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999955   78899976 66775 65  4799999999999999999999 9999999999999999


Q ss_pred             HHHHHHH
Q 018760          341 ILEVQSQ  347 (350)
Q Consensus       341 i~~~~~~  347 (350)
                      |++.+++
T Consensus       299 i~~~~~~  305 (312)
T PRK05086        299 LKKDIAL  305 (312)
T ss_pred             HHHHHHH
Confidence            9998864

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=100.00  E-value=2.3e-55  Score=408.53  Aligned_cols=258  Identities=43%  Similarity=0.692  Sum_probs=242.9

Q ss_pred             EEEEcC-ChhHHHHHHHHHhcC--CCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC-ccccCCCCEEEEecCC
Q 018760           40 ISVIGT-GNVGMAIAQTILTQD--FVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD-YAVTAGSDLCIVTAGA  115 (350)
Q Consensus        40 I~IIGA-G~vG~~~a~~l~~~~--~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~-~~al~~aDiVIi~~g~  115 (350)
                      |+|||| |.+|..+++.|+..+  ...+|+|+|++++++++.++|++|........++..++| +++++|||+||+++|.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            689999 999999999999999  778999999999999999999999875333468888888 5899999999999999


Q ss_pred             CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHc
Q 018760          116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHL  195 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l  195 (350)
                      ++++|++|.+++.+|++++++++++|+++||++|+|++|||+|++|++++|++|+|++|+||+|| +|+.|+++++|+++
T Consensus        81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~-ld~~r~~~~la~~l  159 (263)
T cd00650          81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGT-LDPIRFRRILAEKL  159 (263)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeec-chHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999988 99999999999999


Q ss_pred             CCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHHHH
Q 018760          196 DVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAAN  275 (350)
Q Consensus       196 ~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~~~  275 (350)
                      +++|++|+++|||+||++++|+||+++                                              +|.++++
T Consensus       160 ~v~~~~v~~~v~G~hg~~~~~~~s~~~----------------------------------------------~a~~~~~  193 (263)
T cd00650         160 GVDPDDVKVYILGEHGGSQVPDWSTVR----------------------------------------------IATSIAD  193 (263)
T ss_pred             CCCccceEEEEEEcCCCceEeccccch----------------------------------------------HHHHHHH
Confidence            999999999999999999999999874                                              6789999


Q ss_pred             HHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHH
Q 018760          276 LARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQ  345 (350)
Q Consensus       276 ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~  345 (350)
                      ++++|++|++.++|++++++|+||++ ++++||+||+++++||+++.+++|+++|+++|+++++.++..+
T Consensus       194 ii~ai~~~~~~~~~v~v~~~g~ygi~-~~~~~s~P~~i~~~Gi~~~~~~~l~~~e~~~l~~s~~~~~~~~  262 (263)
T cd00650         194 LIRSLLNDEGEILPVGVRNNGQIGIP-DDVVVSVPCIVGKNGVEEPIEVGLTDFELEKLQKSADTLKKEL  262 (263)
T ss_pred             HHHHHHcCCCEEEEEEEEeCCccCCc-CCEEEEEEEEEeCCceEEEecCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999987 5999999999999999777889999999999999999998765

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=1.4e-48  Score=349.93  Aligned_cols=298  Identities=23%  Similarity=0.443  Sum_probs=255.4

Q ss_pred             CCCCCCCCCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcC---Cc-c
Q 018760           27 HAAPPSPTKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV---DY-A  101 (350)
Q Consensus        27 ~~~~~~~~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~---~~-~  101 (350)
                      ++..++...+..||+|+|| |.+|+++..+|..+++++++.|||+..  ..+.+.||+|+..   ...+...+   .. +
T Consensus        18 ~~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~--~~GVaaDlSHI~T---~s~V~g~~g~~~L~~   92 (345)
T KOG1494|consen   18 KRVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIAN--TPGVAADLSHINT---NSSVVGFTGADGLEN   92 (345)
T ss_pred             cccccccccCcceEEEEecCCccCccHHHHHhcCcccceeeeeeccc--CCcccccccccCC---CCceeccCChhHHHH
Confidence            5555556667889999999 999999999999999999999999974  5788999999874   33454332   23 5


Q ss_pred             ccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHH---HHhC-CCCCcEee
Q 018760          102 VTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAW---KLSG-LPSNRVIG  177 (350)
Q Consensus       102 al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~---~~sg-~~~~rviG  177 (350)
                      ++++||+|||.+|+||||||+|+||+.-|+.|+++++..+.++||+|.+.++|||++.+.+++.   |..| |+|+|+||
T Consensus        93 al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfG  172 (345)
T KOG1494|consen   93 ALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFG  172 (345)
T ss_pred             HhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccceec
Confidence            8999999999999999999999999999999999999999999999999999999998766543   3334 99999999


Q ss_pred             ecCCccHHHHHHHHHHHcCCCC-cceEEEEEeec-CCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhH
Q 018760          178 SGTNLDSSRFRFLLADHLDVNA-QDVQAYIVGEH-GDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSA  255 (350)
Q Consensus       178 ~g~~ld~~r~~~~la~~l~v~p-~~v~~~v~G~h-g~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~  255 (350)
                      + |.||..|++.++++.++++| ++++.+|+|+| |.+.+|++|+..    |..        .+++++++.++.+++..|
T Consensus       173 V-TtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~----p~~--------~~~~~~~~~Lt~RiQ~gG  239 (345)
T KOG1494|consen  173 V-TTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCK----PPF--------RFTDDEIEALTHRIQNGG  239 (345)
T ss_pred             e-ehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCC----Ccc--------cCCHHHHHHHHHHHHhCC
Confidence            9 99999999999999999999 55999999999 679999999884    432        478889999999999999


Q ss_pred             HHHHHhc---CCcchHHHHHHHHHHHHHHhcCC---CeEEEEE-EeccccCCCCCCeEEEEeEEEcCCceEEeecC-CCC
Q 018760          256 YEVISLK---GYTSWAIGYSAANLARSIIRDQR---KIHPVSV-LAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNI-HLN  327 (350)
Q Consensus       256 ~~v~~~k---g~~~~~~a~a~~~ii~ai~~~~~---~v~~v~v-~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~-~L~  327 (350)
                      .||++.|   |+.++|+|+|.++++.++++..+   .+.-|+. .+. .++++    ||+.|+++|++|++.+.++ +|+
T Consensus       240 tEVV~AKaGaGSATLSMAyAga~fa~s~lrgl~G~~~v~ecafV~s~-~~~~~----fFaspv~Lg~~Gv~~v~~l~~ls  314 (345)
T KOG1494|consen  240 TEVVKAKAGAGSATLSMAYAGAKFADSLLRGLNGDEDVVECAFVASP-VTELP----FFATPVTLGKKGVEEVLGLGKLS  314 (345)
T ss_pred             ceEEEeccCCCchhhhHHHHHHHHHHHHHHHhCCCCCeEEEeEEecc-ccCcc----ceeceEEecCCceeeecCCCccC
Confidence            9999876   67899999999999999998532   3433433 333 23553    9999999999999999987 999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 018760          328 QEESHRLRNSAKTILEVQSQ  347 (350)
Q Consensus       328 ~~E~~~l~~sa~~i~~~~~~  347 (350)
                      ++|++.|+.+..+|++.+++
T Consensus       315 d~E~~~l~~~~~eLk~sI~K  334 (345)
T KOG1494|consen  315 DYEEKALEAAKPELKKSIEK  334 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999875

>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=2.1e-44  Score=316.68  Aligned_cols=305  Identities=22%  Similarity=0.316  Sum_probs=269.0

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCC-----CeEEEEeCCc--cchHHHHHHHHHHhhcCCCceEEEcCCc-cccC
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFV-----EELALVDAKA--DKLRGEMLDLQHAAAFLPRTKILASVDY-AVTA  104 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~-----~ev~L~D~~~--~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~  104 (350)
                      ++++.+|.|.|| |.+|+++++.++....+     -.++|+|+.+  +.|++..++|+++. +.....|.+++|. ++++
T Consensus         1 ~~epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a-~PlL~~Vvattd~~~afk   79 (332)
T KOG1496|consen    1 MKEPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCA-LPLLKGVVATTDEVEAFK   79 (332)
T ss_pred             CCCceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhh-hhHHHhhhcccChhhhhc
Confidence            356789999998 99999999999987433     2789999966  67899999999987 3334457777786 7899


Q ss_pred             CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHHHHHHHHh-CCCCCcEeeecCCc
Q 018760          105 GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILTYVAWKLS-GLPSNRVIGSGTNL  182 (350)
Q Consensus       105 ~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~~~~~~~s-g~~~~rviG~g~~l  182 (350)
                      |.|+.|+..++||++|++|.|++..|.+|++..+..+++| .|+..++++.||++..+.++.++. .+|.+++-.+ |.|
T Consensus        80 dv~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~k~ApsIP~kNfs~l-TRL  158 (332)
T KOG1496|consen   80 DVDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILKKFAPSIPEKNFSAL-TRL  158 (332)
T ss_pred             cCcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHhhhCCCCchhcchhh-hhh
Confidence            9999999999999999999999999999999999999999 589999999999999999998886 5888888777 999


Q ss_pred             cHHHHHHHHHHHcCCCCcceE-EEEEeecCCceeeeecceeecC----ccccccchhhhccCCHHHHHHHHHHHHhhHHH
Q 018760          183 DSSRFRFLLADHLDVNAQDVQ-AYIVGEHGDSSVALWSSISVGG----VPILSFLEKQQIAYEKETLESIHKEVVDSAYE  257 (350)
Q Consensus       183 d~~r~~~~la~~l~v~p~~v~-~~v~G~hg~~~vp~~S~~~v~g----~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~  257 (350)
                      |.+|+..++|.+++++.++|+ ..+||||+.+|+|+..+++|++    .|+.+.+.+.. |+..    ++.+.|++||..
T Consensus       159 DhNRA~~QlA~klgv~~~~VkNviIWGNHSsTQyPD~~hA~V~~~~~~~~v~e~v~d~~-wL~g----~Fi~tVQkRGaa  233 (332)
T KOG1496|consen  159 DHNRALAQLALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVNTNGGEKPVKEAVKDDA-WLQG----EFIETVQKRGAA  233 (332)
T ss_pred             chhhHHHHHHHhhCCchhhcceeEEecccccccCCCccceeeeccCCcccHHHHhccch-hhcc----chhhHHHhcchH
Confidence            999999999999999999996 5699999999999999999986    78888887664 7774    455668889999


Q ss_pred             HHHhcCCc-chHHHHHHHHHHHHHHhc--CCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHH
Q 018760          258 VISLKGYT-SWAIGYSAANLARSIIRD--QRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRL  334 (350)
Q Consensus       258 v~~~kg~~-~~~~a~a~~~ii~ai~~~--~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l  334 (350)
                      +++.|+.+ ..|.|.++++.+++++..  ++++++++|+++|.||+| ++..||+||.+..+-|+-+.+++++++-++++
T Consensus       234 vi~ark~SSA~SaA~aacDhi~dw~~gTpeG~fvSmgV~sDGsYgip-~gli~SfPv~~k~g~wkiVqgl~iddf~r~km  312 (332)
T KOG1496|consen  234 VIKARKLSSAMSAAKAACDHIRDWWFGTPEGTFVSMGVYSDGSYGIP-DGLIFSFPVTIKNGDWKIVQGLPIDDFSREKM  312 (332)
T ss_pred             hhhhhhhhhhhhHHHhHhhhhhheecCCCCccEEEEeeecCCCCCCC-CCeEEEcceEecCCceEEEcCcchhHHHHHhh
Confidence            99887754 567788889999998876  568999999999999999 69999999999998899999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 018760          335 RNSAKTILEVQS  346 (350)
Q Consensus       335 ~~sa~~i~~~~~  346 (350)
                      ..++++|+++.+
T Consensus       313 ~~t~~EL~eEkd  324 (332)
T KOG1496|consen  313 DLTAKELKEEKD  324 (332)
T ss_pred             hhhHHHHHHhHH
Confidence            999999999876

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=100.00  E-value=1e-37  Score=306.38  Aligned_cols=287  Identities=20%  Similarity=0.253  Sum_probs=215.2

Q ss_pred             CeEEEEcCChhHHH--HHHHHHhcC--C-CCeEEEEeCCccchHHHHHHHHHHhh--cCCCceEEEcCCc-cccCCCCEE
Q 018760           38 TKISVIGTGNVGMA--IAQTILTQD--F-VEELALVDAKADKLRGEMLDLQHAAA--FLPRTKILASVDY-AVTAGSDLC  109 (350)
Q Consensus        38 ~KI~IIGAG~vG~~--~a~~l~~~~--~-~~ev~L~D~~~~~l~~~~~dl~~~~~--~~~~~~v~~t~~~-~al~~aDiV  109 (350)
                      |||+|||||+. ++  +...|+...  + .+||+|+|+|++|++. +..+.+...  .....++..|+|. +|++|||||
T Consensus         1 ~KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~-v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfV   78 (425)
T cd05197           1 VKIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDI-ILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFV   78 (425)
T ss_pred             CEEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHH-HHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEE
Confidence            69999999986 32  345566554  3 4799999999999874 444433321  2346789999997 789999999


Q ss_pred             EEecCCC------------cCcc---cc-----HHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhC
Q 018760          110 IVTAGAR------------QIAG---ES-----RLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSG  169 (350)
Q Consensus       110 Ii~~g~~------------~~~g---~~-----r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg  169 (350)
                      |.+..+.            .+.|   ++     ....+.+|+++++++++.|+++||+||+|++|||++++|+++++++ 
T Consensus        79 i~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~~~~~-  157 (425)
T cd05197          79 INQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAVRRYV-  157 (425)
T ss_pred             EEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHHHHhC-
Confidence            9985432            2332   11     3556789999999999999999999999999999999999999984 


Q ss_pred             CCCCcEeeecCCccHHHHHHHHHHHcCCCCcceEEEEEe-ecCCceeeeecceeecCccccccchh---h----------
Q 018760          170 LPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVG-EHGDSSVALWSSISVGGVPILSFLEK---Q----------  235 (350)
Q Consensus       170 ~~~~rviG~g~~ld~~r~~~~la~~l~v~p~~v~~~v~G-~hg~~~vp~~S~~~v~g~p~~~~~~~---~----------  235 (350)
                       |+.||||+ |+. +.|+++.+|+.+|+++++|+++++| |||    +|||+++++|+|+...+.+   .          
T Consensus       158 -p~~rviG~-c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg----~~~s~~~~~G~~l~p~l~~~~~~~~~~~~~~~~  230 (425)
T cd05197         158 -PPEKAVGL-CNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHG----IWLNRVRYNGGDVTPKLDEWVEEKSKDWKTENP  230 (425)
T ss_pred             -CCCcEEEE-CCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCe----EeeEeEEECCeecHHHHHHHHhccCcccccccc
Confidence             67899999 555 8999999999999999999999999 996    9999999999887633221   0          


Q ss_pred             ------------------------hcc-CCHHHHH----HHH------HHHHhhHH---HH------------HHhcCCc
Q 018760          236 ------------------------QIA-YEKETLE----SIH------KEVVDSAY---EV------------ISLKGYT  265 (350)
Q Consensus       236 ------------------------~~~-~~~~~~~----~i~------~~v~~~~~---~v------------~~~kg~~  265 (350)
                                              .|+ +.++..+    ++.      +.+.....   +.            +..++..
T Consensus       231 ~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~r~~~  310 (425)
T cd05197         231 FVDQLSPAAIDFYRFYGVLPNPYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVVELIKRGGR  310 (425)
T ss_pred             ccccccchHHHHHHhCCCcccCCccccCccchhhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCChhhhhhcCCc
Confidence                                    000 0111111    100      00000000   00            1112233


Q ss_pred             chHHHHHHHHHHHHHHhcCCCeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHH
Q 018760          266 SWAIGYSAANLARSIIRDQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNS  337 (350)
Q Consensus       266 ~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~s  337 (350)
                      .|  +..++.+++||++|.+.++.++|.|+|.. ++| +|.++++||+++++|++|+.-.+|++....+++.-
T Consensus       311 ~~--~e~a~~ii~ai~~~~~~~~~vNv~N~G~I~nLp-~d~vVEvp~~v~~~Gi~P~~vg~lp~~~~~Li~~~  380 (425)
T cd05197         311 KY--SEAAIPLIRALLNDNGARFVVNTRNNGAIANID-DDVVVEVPCLVDKNGPHPIKVGPLDRFVKGLLRQR  380 (425)
T ss_pred             cc--HHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCC-CCCEEEEeEEEcCCCceecccCCCCHHHHHHHHHH
Confidence            34  48899999999999999999999999996 998 69999999999999999998889988776666553

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PRK15076 alpha-galactosidase; Provisional

Probab=100.00  E-value=8.1e-38  Score=308.04  Aligned_cols=291  Identities=18%  Similarity=0.224  Sum_probs=221.4

Q ss_pred             CCeEEEEcCChhHHHHHH--HHH-hcCCC-CeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCC-ccccCCCCEEE
Q 018760           37 HTKISVIGTGNVGMAIAQ--TIL-TQDFV-EELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVD-YAVTAGSDLCI  110 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~--~l~-~~~~~-~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~-~~al~~aDiVI  110 (350)
                      ++||+|||||+||++.++  .++ ..++. .||+|+|+++++++.....+++..... ...++..|+| +++++||||||
T Consensus         1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv   80 (431)
T PRK15076          1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVI   80 (431)
T ss_pred             CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEe
Confidence            369999999999998876  666 34454 499999999999883332355554322 3578888889 48999999999


Q ss_pred             EecCCC-cCcc--------------ccHHHH--------HHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHH
Q 018760          111 VTAGAR-QIAG--------------ESRLNL--------LQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKL  167 (350)
Q Consensus       111 i~~g~~-~~~g--------------~~r~~~--------~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~  167 (350)
                      ++++.+ .+++              ++|.+.        +.+|++++++++++|+++||+||+|++|||++++|++++  
T Consensus        81 ~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~--  158 (431)
T PRK15076         81 NAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN--  158 (431)
T ss_pred             EeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh--
Confidence            999876 4444              455566        899999999999999999999999999999999999997  


Q ss_pred             hCCCCCcEeeec-CCccHHHHHHHHHHHcCCCCcceEEEEEe-ecCCceeeeecceeecCccccccchh-----------
Q 018760          168 SGLPSNRVIGSG-TNLDSSRFRFLLADHLDVNAQDVQAYIVG-EHGDSSVALWSSISVGGVPILSFLEK-----------  234 (350)
Q Consensus       168 sg~~~~rviG~g-~~ld~~r~~~~la~~l~v~p~~v~~~v~G-~hg~~~vp~~S~~~v~g~p~~~~~~~-----------  234 (350)
                       ++|+.||||++ +.++   ..+.+|+.+++++++|++++.| ||    +.|+.+.+++|.++...+.+           
T Consensus       159 -~~~~~rviG~c~~~~~---~~~~ia~~l~v~~~~v~~~~~GlNH----~~W~~~~~~~G~D~~p~l~~~~~~~~~~~~~  230 (431)
T PRK15076        159 -RYPGIKTVGLCHSVQG---TAEQLARDLGVPPEELRYRCAGINH----MAWYLELERKGEDLYPELRAAAAEGQTRCQD  230 (431)
T ss_pred             -cCCCCCEEEECCCHHH---HHHHHHHHhCCCHHHeEEEEEeecc----hhhheeeeECCcchHHHHHHHHhccCchhcc
Confidence             56778999994 3444   3488999999999999999999 99    89999999988765422111           


Q ss_pred             ----h-----------------h--ccC----CHHHHHHHHH---HHHhhH-------HHHH-HhcCCcch---HHHHHH
Q 018760          235 ----Q-----------------Q--IAY----EKETLESIHK---EVVDSA-------YEVI-SLKGYTSW---AIGYSA  273 (350)
Q Consensus       235 ----~-----------------~--~~~----~~~~~~~i~~---~v~~~~-------~~v~-~~kg~~~~---~~a~a~  273 (350)
                          .                 .  .|+    .++.++++..   ...++.       .+.. +.++...|   ..+..+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~a  310 (431)
T PRK15076        231 KVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELANAERIEIKRSREYA  310 (431)
T ss_pred             cccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhCCCccccccchHHH
Confidence                0                 0  122    3444443321   001111       1111 22233111   134789


Q ss_pred             HHHHHHHHhcCCCeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHH
Q 018760          274 ANLARSIIRDQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA  338 (350)
Q Consensus       274 ~~ii~ai~~~~~~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa  338 (350)
                      +++++||.+|.+.++.++|.|+|.. ++| +|.++++||.++++|++|+.-.+|++..+.+++.-.
T Consensus       311 ~~ii~ai~~~~~~~~~vnv~N~G~I~~Lp-~d~vVEvp~~v~~~G~~P~~~g~lP~~~~~l~~~~~  375 (431)
T PRK15076        311 STIIEAIETGEPSVIYGNVRNNGLIDNLP-QGCCVEVPCLVDRNGIQPTKVGDLPPQLAALNRTNI  375 (431)
T ss_pred             HHHHHHHhcCCceEEEEECCCCCcCCCCC-CCCEEEEeEEEcCCcceeeecCCCCHHHHHHHHHHH
Confidence            9999999999999999999999996 998 699999999999999999999999999887765543

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=100.00  E-value=8.5e-37  Score=299.34  Aligned_cols=289  Identities=21%  Similarity=0.296  Sum_probs=220.1

Q ss_pred             CeEEEEcCChhHHH-HHHHHHhc-C-C-CCeEEEEeCC-ccchHHHHHHHHHHhh-cCCCceEEEcCCc-cccCCCCEEE
Q 018760           38 TKISVIGTGNVGMA-IAQTILTQ-D-F-VEELALVDAK-ADKLRGEMLDLQHAAA-FLPRTKILASVDY-AVTAGSDLCI  110 (350)
Q Consensus        38 ~KI~IIGAG~vG~~-~a~~l~~~-~-~-~~ev~L~D~~-~~~l~~~~~dl~~~~~-~~~~~~v~~t~~~-~al~~aDiVI  110 (350)
                      |||+|||||++... +...|+.. . + .++|+|+|+| +++++......+.... ..+..++..|+|+ +|++||||||
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfVi   80 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF   80 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence            69999999987333 34556653 2 3 4799999999 8988754333333322 2246789999997 7899999999


Q ss_pred             EecCCCcCccccHHH--------------------HHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCC
Q 018760          111 VTAGARQIAGESRLN--------------------LLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGL  170 (350)
Q Consensus       111 i~~g~~~~~g~~r~~--------------------~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~  170 (350)
                      ++++++..++.++++                    .+.+|+++++++++.|+++||+||+|++|||++++|++++|.+  
T Consensus        81 ~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~~k~~--  158 (419)
T cd05296          81 TQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAVLRHT--  158 (419)
T ss_pred             EEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHHHhc--
Confidence            998776655554433                    3789999999999999999999999999999999999999886  


Q ss_pred             CCCcEeeecCCccHHHHHHHHHHHcCCCCcceEEEEEe-ecCCceeeeecceeecCccccccchh----------h----
Q 018760          171 PSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVG-EHGDSSVALWSSISVGGVPILSFLEK----------Q----  235 (350)
Q Consensus       171 ~~~rviG~g~~ld~~r~~~~la~~l~v~p~~v~~~v~G-~hg~~~vp~~S~~~v~g~p~~~~~~~----------~----  235 (350)
                       +.||||+ |+. +.|+++.+|+.+|+++++|+++++| ||    +.|+.+.+.+|+++...+.+          .    
T Consensus       159 -~~rviGl-c~~-~~r~~~~ia~~lg~~~~~v~~~v~GlNH----~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~~~  231 (419)
T cd05296         159 -GDRVIGL-CNV-PIGLQRRIAELLGVDPEDVFIDYAGLNH----LGWLRRVLLDGEDVLPELLEDLAALLSFEEGLLFG  231 (419)
T ss_pred             -cCCEEee-CCc-HHHHHHHHHHHhCCCHHHceEEEEeccc----ceeeeeeeECCcccHHHHHHHhhhccccccccchH
Confidence             5799999 766 4899999999999999999999999 99    89999999988876532111          0    


Q ss_pred             ---------------hccC-CHHHHHHHHHHHHhhH-------HHH---------------HHhcCCcchHHHHHHHHHH
Q 018760          236 ---------------QIAY-EKETLESIHKEVVDSA-------YEV---------------ISLKGYTSWAIGYSAANLA  277 (350)
Q Consensus       236 ---------------~~~~-~~~~~~~i~~~v~~~~-------~~v---------------~~~kg~~~~~~a~a~~~ii  277 (350)
                                     .||+ .++.+++....-..++       .++               +..|+...|+  ..+++++
T Consensus       232 ~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~~r~g~~y~--e~a~~ii  309 (419)
T cd05296         232 PELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELEKRGGAGYS--EAALALI  309 (419)
T ss_pred             HHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhHhhcCcchH--HHHHHHH
Confidence                           0122 2333333221100111       111               1123333443  8899999


Q ss_pred             HHHHhcCCCeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHH
Q 018760          278 RSIIRDQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA  338 (350)
Q Consensus       278 ~ai~~~~~~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa  338 (350)
                      +||+++.+.++.+++.|+|.. ++| +|+++++||.++++|++|+.-.+|++....+++.-.
T Consensus       310 ~ai~~~~~~~~~vNv~N~G~I~~Lp-~d~vVEvp~~v~~~G~~P~~vg~lP~~~~~l~~~~~  370 (419)
T cd05296         310 SAIYNDKGDIHVVNVRNNGAIPGLP-DDAVVEVPCVVDADGAHPLPVGPLPPAILGLIQQVK  370 (419)
T ss_pred             HHHhcCCCcEEEEECCCCCCCCCCC-CCCEEEEeEEEcCCCceeccCCCCCHHHHHHHHHHH
Confidence            999999999999999999996 998 699999999999999999988899998877655433

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=100.00  E-value=1.9e-37  Score=271.08  Aligned_cols=167  Identities=42%  Similarity=0.731  Sum_probs=157.4

Q ss_pred             CCccHHHHHHHHHHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHH
Q 018760          180 TNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVI  259 (350)
Q Consensus       180 ~~ld~~r~~~~la~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~  259 (350)
                      |.||++|+++++|+++|++|++++++||||||+++||+||+++++|.|+.++..... .+++++++++.+++++++++|+
T Consensus         1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~s~~~~~S~~~v~g~pl~~~~~~~~-~~~~~~~~~l~~~v~~~g~~ii   79 (174)
T PF02866_consen    1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGDSQVPDWSHAKVGGVPLLSYAKPSG-KLSEEELEELTERVRKAGYEII   79 (174)
T ss_dssp             THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSSTTEEEEGGGEEETTEEHHHHHHTTT-SSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCccceEEEEEecCCcceeeeeeccccccccccccccccc-chhHHhhhccccccEeccceee
Confidence            579999999999999999999999999999999999999999999999988765432 5788899999999999999999


Q ss_pred             Hhc-CCcchHHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCC-eEEEEeEEEcCCceEEeec-CCCCHHHHHHHHH
Q 018760          260 SLK-GYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGD-VFLSLPAQLGRGGVLGVTN-IHLNQEESHRLRN  336 (350)
Q Consensus       260 ~~k-g~~~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~-~~~s~Pv~ig~~Gv~~v~~-~~L~~~E~~~l~~  336 (350)
                      +.| |+++||+|.++++++++|+++.+.++|++++.+|+||++ ++ +|||+||++|++|++++.+ ++|+++|+++|++
T Consensus        80 ~~k~g~t~~s~A~a~~~~v~ail~~~~~i~~~sv~~~g~yg~~-~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~  158 (174)
T PF02866_consen   80 KAKGGSTSYSIAAAAARIVEAILKDERRILPVSVYLDGEYGIP-DGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQEKLKE  158 (174)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHTTHTEEEEEEEEEESGGGEE-SSSEEEEEEEEEETTEEEEEECSBSSTHHHHHHHHH
T ss_pred             eeccccCcCCHHHHHHHHHHHHhhcccccccceeccccccCcc-cccceecceEEEcCCeeEEEeCCCCCCHHHHHHHHH
Confidence            999 999999999999999999999999999999999999997 35 9999999999999999998 9999999999999


Q ss_pred             HHHHHHHHHHHh
Q 018760          337 SAKTILEVQSQL  348 (350)
Q Consensus       337 sa~~i~~~~~~~  348 (350)
                      |++.|++.+++.
T Consensus       159 sa~~l~~~i~~~  170 (174)
T PF02866_consen  159 SAKELKKEIEKG  170 (174)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999763

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=100.00  E-value=2.4e-35  Score=290.01  Aligned_cols=291  Identities=19%  Similarity=0.275  Sum_probs=215.9

Q ss_pred             CeEEEEcCChhHH-HHHHHHHhcC--C-CCeEEEEeCCccchHHHHHHHHHHhh--cCCCceEEEcCCc-cccCCCCEEE
Q 018760           38 TKISVIGTGNVGM-AIAQTILTQD--F-VEELALVDAKADKLRGEMLDLQHAAA--FLPRTKILASVDY-AVTAGSDLCI  110 (350)
Q Consensus        38 ~KI~IIGAG~vG~-~~a~~l~~~~--~-~~ev~L~D~~~~~l~~~~~dl~~~~~--~~~~~~v~~t~~~-~al~~aDiVI  110 (350)
                      |||+|||||++=+ .+...|+...  + .++|+|+|+|++|++. +..+.+...  .....++..|+|. +|++||||||
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~-v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi   79 (437)
T cd05298           1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEK-VAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVF   79 (437)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHH-HHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEE
Confidence            7999999998622 1345666552  3 4799999999999975 444443321  2346789999997 7999999999


Q ss_pred             EecCCC------------cCcc---cc-----HHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCC
Q 018760          111 VTAGAR------------QIAG---ES-----RLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGL  170 (350)
Q Consensus       111 i~~g~~------------~~~g---~~-----r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~  170 (350)
                      ++..+.            .+.|   ++     ....+.||+++++++++.|+++||+||+|++|||++++|+++++.  +
T Consensus        80 ~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~~~~--~  157 (437)
T cd05298          80 AQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEALRRL--F  157 (437)
T ss_pred             EEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHH--C
Confidence            985332            2332   11     355688999999999999999999999999999999999999987  6


Q ss_pred             CCCcEeeecCCccHHHHHHHHHHHcCCCCcceEEEEEe-ecCCceeeeecceeec-Cccccccchh---h-h--------
Q 018760          171 PSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVG-EHGDSSVALWSSISVG-GVPILSFLEK---Q-Q--------  236 (350)
Q Consensus       171 ~~~rviG~g~~ld~~r~~~~la~~l~v~p~~v~~~v~G-~hg~~~vp~~S~~~v~-g~p~~~~~~~---~-~--------  236 (350)
                      |..||||+ |+.. ..+.+.+|+.||+++++|...+.| ||    +.|+.+.+.+ |+++...+.+   . .        
T Consensus       158 ~~~kviGl-C~~~-~~~~~~la~~lg~~~~~v~~~~~GlNH----~~w~~~~~~~~G~D~~p~l~e~~~~~~~~~~~~~~  231 (437)
T cd05298         158 PNARILNI-CDMP-IAIMDSMAAILGLDRKDLEPDYFGLNH----FGWFTKIYDKQGEDLLPKLREHVKENGYLPPDSDE  231 (437)
T ss_pred             CCCCEEEE-CCcH-HHHHHHHHHHhCCCHHHceEEEEeecc----hhhhhheEECCCCchHHHHHHHHhccCCCcccccc
Confidence            77899999 9985 578889999999999999999999 99    8899999998 8765533221   0 0        


Q ss_pred             -------------------------------ccC-CHHHHHHHHH-------HHHhhHHHHH---H---hcCCc---ch-
Q 018760          237 -------------------------------IAY-EKETLESIHK-------EVVDSAYEVI---S---LKGYT---SW-  267 (350)
Q Consensus       237 -------------------------------~~~-~~~~~~~i~~-------~v~~~~~~v~---~---~kg~~---~~-  267 (350)
                                                     +++ .++..+++..       .+.....+..   +   ..+..   .+ 
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~  311 (437)
T cd05298         232 EHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKIIETGTAEGSTFH  311 (437)
T ss_pred             cccccCchHHHHHHhhHHHhCCCcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhhhcCChhhhhhh
Confidence                                           001 1111122110       0111111110   0   00100   11 


Q ss_pred             --HHHHHHHHHHHHHHhcCCCeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHH
Q 018760          268 --AIGYSAANLARSIIRDQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA  338 (350)
Q Consensus       268 --~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa  338 (350)
                        ..|.+++++++||++|++.++++|++++|.| ++| +|+++|+||+||++|++++.-.+|++....+++.-.
T Consensus       312 ~~~ya~~a~~ii~aI~~d~~~~~~vnv~n~G~i~nL~-~d~~vevP~~v~~~Gi~pi~vg~lP~~~~~l~~~~~  384 (437)
T cd05298         312 VDVHGEYIVDLAASIAYNTKERFLVIVENNGAIPNLP-DDAMVEVPAYIGSNGPEPLVVGKIPTFYKGLMEQQV  384 (437)
T ss_pred             ccchHHHHHHHHHHHHcCCCeEEEEEeecCCccCCCC-CCcEEEEEEEEeCCCceecccCCCCHHHHHHHHHHH
Confidence              2468999999999999999999999999998 687 699999999999999999998899998877765543

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.9e-34  Score=275.82  Aligned_cols=293  Identities=19%  Similarity=0.232  Sum_probs=217.3

Q ss_pred             CCCeEEEEcCChhHHHHH-H-HHHhcC-C-CCeEEEEeCCccchHHHHHHHHHHhh--cCCCceEEEcCCc-cccCCCCE
Q 018760           36 RHTKISVIGTGNVGMAIA-Q-TILTQD-F-VEELALVDAKADKLRGEMLDLQHAAA--FLPRTKILASVDY-AVTAGSDL  108 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a-~-~l~~~~-~-~~ev~L~D~~~~~l~~~~~dl~~~~~--~~~~~~v~~t~~~-~al~~aDi  108 (350)
                      +++||+|||||+++.+-. . .|...+ + ..+|+|+|++++|++ ....+.+...  ..+..++..|+|. +|++||||
T Consensus         2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~-~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAdf   80 (442)
T COG1486           2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLK-IIAILAKKLVEEAGAPVKVEATTDRREALEGADF   80 (442)
T ss_pred             CcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHH-HHHHHHHHHHHhhCCCeEEEEecCHHHHhcCCCE
Confidence            457999999999887753 2 344433 2 469999999999998 4444444331  2345889999997 79999999


Q ss_pred             EEEecCC------------CcCccc---c-----HHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHh
Q 018760          109 CIVTAGA------------RQIAGE---S-----RLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLS  168 (350)
Q Consensus       109 VIi~~g~------------~~~~g~---~-----r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~s  168 (350)
                      |+.+..+            |.+.|-   +     ......|++|++.+|++.|+++||+||++++|||+.++|+++.|++
T Consensus        81 Vi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~~vTeAv~r~~  160 (442)
T COG1486          81 VITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAAIVTEAVRRLY  160 (442)
T ss_pred             EEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHHHHHHHHHHhC
Confidence            9998532            233332   1     3445789999999999999999999999999999999999999985


Q ss_pred             CCCCCcEeeecCCccHHHHHHHHHHHcCCCC-cceEEEEEe-ecCCceeeeecceeecCccccccchh----h-------
Q 018760          169 GLPSNRVIGSGTNLDSSRFRFLLADHLDVNA-QDVQAYIVG-EHGDSSVALWSSISVGGVPILSFLEK----Q-------  235 (350)
Q Consensus       169 g~~~~rviG~g~~ld~~r~~~~la~~l~v~p-~~v~~~v~G-~hg~~~vp~~S~~~v~g~p~~~~~~~----~-------  235 (350)
                      +  .-|+||+ |+.. .-....+|+.|++++ ++++..+.| ||    +.||.+++.+|.++...+.+    .       
T Consensus       161 ~--~~K~VGl-Ch~~-~g~~~~lAe~L~~~~~~~l~~~~aGlNH----~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~~  232 (442)
T COG1486         161 P--KIKIVGL-CHGP-IGIAMELAEVLGLEPREDLRYRVAGLNH----MVWILRVRDDGEDLYPELLEALEEGGSPSEPE  232 (442)
T ss_pred             C--CCcEEee-CCch-HHHHHHHHHHhCCCchhceeEEEeechh----hhhhhHhhhcCccchHHHHHHHhccccCCccc
Confidence            4  3499999 9975 678999999999975 999999999 99    88999888887654422211    0       


Q ss_pred             --------------------------hccCCHHHHH-----HH------HHHHHhhHHHH---------------HHhcC
Q 018760          236 --------------------------QIAYEKETLE-----SI------HKEVVDSAYEV---------------ISLKG  263 (350)
Q Consensus       236 --------------------------~~~~~~~~~~-----~i------~~~v~~~~~~v---------------~~~kg  263 (350)
                                                .+++.+..+.     ++      .+.++++..+.               .+.++
T Consensus       233 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~~~~~~~~~~p~~~~~~~  312 (442)
T COG1486         233 NKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEKPEELEKRI  312 (442)
T ss_pred             cccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccchhhhhcCCCHHHHHHHHHHHHHHHhhhhhhcCchhhhhcC
Confidence                                      0111111111     00      01111111111               11123


Q ss_pred             Cc--chHHHHHHHHHHHHHHhcCCCeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHH
Q 018760          264 YT--SWAIGYSAANLARSIIRDQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKT  340 (350)
Q Consensus       264 ~~--~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~  340 (350)
                      .+  .|  +..++++++||++|++.++.++|.|+|.. ++| +|.++++||+++++|++++...+|++.-...++.....
T Consensus       313 ~~~~~~--~e~a~~ii~Ai~~~~~~~~~vNv~N~G~I~nlp-~D~vVEvpc~Vd~~Gi~P~~~g~lP~~~~~l~~~~i~~  389 (442)
T COG1486         313 GAGKYS--SEYASNIINAIENNKPSRIYVNVRNNGAITNLP-DDAVVEVPCLVDRNGIHPLAVGDLPEFVKGLMHTNINV  389 (442)
T ss_pred             Cccccc--HHHHHHHHHHHhcCCceEEEEEcCCCccccCCC-CCeEEEeeEEecCCCCcccccCCCCHHHHHHHHHHHHH
Confidence            32  33  47899999999999999999999999995 998 69999999999999999999999999998877765543

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=100.00  E-value=1.1e-33  Score=279.15  Aligned_cols=289  Identities=19%  Similarity=0.212  Sum_probs=220.7

Q ss_pred             CeEEEEcCChhHHHHHH--HHHhc-CCC-CeEEEEeCCccchHHHHHHHHHHhhc-CCCceEEEcCCc-cccCCCCEEEE
Q 018760           38 TKISVIGTGNVGMAIAQ--TILTQ-DFV-EELALVDAKADKLRGEMLDLQHAAAF-LPRTKILASVDY-AVTAGSDLCIV  111 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~--~l~~~-~~~-~ev~L~D~~~~~l~~~~~dl~~~~~~-~~~~~v~~t~~~-~al~~aDiVIi  111 (350)
                      +||+|||||++|++.+.  .++.. .+. .+|+|+|+++++++....++.+.... ....++..++|+ ++++|||+||+
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~   80 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN   80 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence            58999999999999776  56544 332 49999999999999887777665432 234688888896 78999999999


Q ss_pred             ecCCCcCccccH----------------------HHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhC
Q 018760          112 TAGARQIAGESR----------------------LNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSG  169 (350)
Q Consensus       112 ~~g~~~~~g~~r----------------------~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg  169 (350)
                      +++....++.++                      .....+|++++.++++.+.++||++|++++|||++++|+++++.++
T Consensus        81 ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~~k~~~  160 (423)
T cd05297          81 TIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTP  160 (423)
T ss_pred             eeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHHHHhCC
Confidence            987654444333                      4567889999999999999999999999999999999999999987


Q ss_pred             CCCCcEeeecCCccHHHHHHHHHHHcCCCCcceEEEEEe-ecCCceeeeecceeecCccccccchh---h----------
Q 018760          170 LPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVG-EHGDSSVALWSSISVGGVPILSFLEK---Q----------  235 (350)
Q Consensus       170 ~~~~rviG~g~~ld~~r~~~~la~~l~v~p~~v~~~v~G-~hg~~~vp~~S~~~v~g~p~~~~~~~---~----------  235 (350)
                         .|+||+ |+. +.++++.+|+.+++++++|+++++| ||    +.||.+.+.+|+++...+.+   .          
T Consensus       161 ---~rviG~-c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH----~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~~~~  231 (423)
T cd05297         161 ---IKTVGL-CHG-VQGTAEQLAKLLGEPPEEVDYQVAGINH----MAWLLKFEYNGEDLYPLLDEWIEEGSEEWDQLSP  231 (423)
T ss_pred             ---CCEEEE-CCc-HHHHHHHHHHHhCCCHHHeEEEEEeecc----HhhhhhheECCcchHHHHHHHHhccCccchhccc
Confidence               599999 655 7899999999999999999999999 99    88999999888765532211   0          


Q ss_pred             ---------------------h--cc--CCHHHHHHHHHH----------HHhhHHHHHH-----------hcCCcchHH
Q 018760          236 ---------------------Q--IA--YEKETLESIHKE----------VVDSAYEVIS-----------LKGYTSWAI  269 (350)
Q Consensus       236 ---------------------~--~~--~~~~~~~~i~~~----------v~~~~~~v~~-----------~kg~~~~~~  269 (350)
                                           .  ++  ..++.+......          ....-+.-..           ..+...  .
T Consensus       232 ~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  309 (423)
T cd05297         232 VRFDMYRRYGLFPTESSEHLSEYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEELDPVKR--S  309 (423)
T ss_pred             chHHHHHHcCCcccCcchhhhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHhhhhhccchhcchhcccccc--c
Confidence                                 0  00  110111111000          0000000000           011122  3


Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHH
Q 018760          270 GYSAANLARSIIRDQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA  338 (350)
Q Consensus       270 a~a~~~ii~ai~~~~~~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa  338 (350)
                      +..++++++||+++.+.++.+++.|+|.. ++| +|.++++||.++++|++|+.-.+|++....+++.-.
T Consensus       310 ~e~a~~ii~ai~~~~~~~~~vnv~N~G~I~~Lp-~d~vVEvp~~v~~~G~~p~~~g~lp~~~~~l~~~~~  378 (423)
T cd05297         310 GEYASPIIEALVTGKPRRINGNVPNNGLIPNLP-DDVVVEVPALVDRNGIHPEKIGPLPPQLAALIRPRI  378 (423)
T ss_pred             hHHHHHHHHHHhcCCceEEEEECCCCCCCCCCC-CCcEEEEeeEEcCCCceecccCCCCHHHHHHHHHHH
Confidence            47799999999999999999999999995 998 699999999999999999999999998877766544

linked to 3D####ucture

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=100.00  E-value=2.4e-33  Score=236.56  Aligned_cols=139  Identities=45%  Similarity=0.771  Sum_probs=129.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCC-CceEEEcCCccccCCCCEEEEecCC
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKILASVDYAVTAGSDLCIVTAGA  115 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~-~~~v~~t~~~~al~~aDiVIi~~g~  115 (350)
                      |||+|||| |.||+++++.|+.+++.+||+|+|++++++++.++|++|...+.. ...+. +.++++++|||+||+++|.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~-~~~~~~~~~aDivvitag~   79 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRIT-SGDYEALKDADIVVITAGV   79 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEE-ESSGGGGTTESEEEETTST
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccc-cccccccccccEEEEeccc
Confidence            79999999 999999999999999999999999999999999999999987553 33444 3678999999999999999


Q ss_pred             CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEee
Q 018760          116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIG  177 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG  177 (350)
                      +++||++|.+++..|++++++++++|.+++|+++++++|||+|++++++++++++||+|+||
T Consensus        80 ~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~~~~~s~~~~~kviG  141 (141)
T PF00056_consen   80 PRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMTYVAQKYSGFPPNKVIG  141 (141)
T ss_dssp             SSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHHHHHHHHHTSSGGGEEE
T ss_pred             cccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHHHHHHHhhCcCcccCcC
Confidence            99999999999999999999999999999999999999999999999999999999999997

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=99.90  E-value=4.4e-23  Score=179.60  Aligned_cols=154  Identities=21%  Similarity=0.257  Sum_probs=115.5

Q ss_pred             eEEEEcCChhHHHHH--HHHHhcCC--CCeEEEEeCCccchHHHHHHHHHHh-h-cCCCceEEEcCCc-cccCCCCEEEE
Q 018760           39 KISVIGTGNVGMAIA--QTILTQDF--VEELALVDAKADKLRGEMLDLQHAA-A-FLPRTKILASVDY-AVTAGSDLCIV  111 (350)
Q Consensus        39 KI~IIGAG~vG~~~a--~~l~~~~~--~~ev~L~D~~~~~l~~~~~dl~~~~-~-~~~~~~v~~t~~~-~al~~aDiVIi  111 (350)
                      ||+|||||++-++..  ..+...+-  ..||+|+|+|++|++. +..+.... . .....++..|+|. +|++||||||+
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~-~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~   79 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEI-VERLARRMVEEAGADLKVEATTDRREALEGADFVIN   79 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHH-HHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHH-HHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEE
Confidence            899999999877753  34444442  2599999999999984 33333322 1 3357899999997 78999999999


Q ss_pred             ecCC------------CcCcccc----------HHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhC
Q 018760          112 TAGA------------RQIAGES----------RLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSG  169 (350)
Q Consensus       112 ~~g~------------~~~~g~~----------r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg  169 (350)
                      +..+            |.+.|..          ....+.|++|++.++++.|+++|||||++|+|||+.++|+++.|+++
T Consensus        80 ~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~~r~~~  159 (183)
T PF02056_consen   80 QIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEALSRYTP  159 (183)
T ss_dssp             ---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHHHHHST
T ss_pred             EeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHHHHhCC
Confidence            9643            3344321          35668899999999999999999999999999999999999998865


Q ss_pred             CCCCcEeeecCCccHHHHHHHHHHHcCC
Q 018760          170 LPSNRVIGSGTNLDSSRFRFLLADHLDV  197 (350)
Q Consensus       170 ~~~~rviG~g~~ld~~r~~~~la~~l~v  197 (350)
                        ..|++|+ |+.. .-..+.+|+.||.
T Consensus       160 --~~k~vGl-Ch~~-~~~~~~la~~L~~  183 (183)
T PF02056_consen  160 --KIKVVGL-CHGP-QGTRRQLAKLLGM  183 (183)
T ss_dssp             --TSEEEEE--SHH-HHHHHHHHHHHT-
T ss_pred             --CCCEEEE-CCCH-HHHHHHHHHHhCc
Confidence              2599999 9975 6788889999873

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.29  E-value=3.2e-11  Score=115.26  Aligned_cols=161  Identities=21%  Similarity=0.259  Sum_probs=113.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHH--------HHHHHhh-cCCCceEEEcCCc-cccCCCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEML--------DLQHAAA-FLPRTKILASVDY-AVTAGSD  107 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~--------dl~~~~~-~~~~~~v~~t~~~-~al~~aD  107 (350)
                      |||+|||.|.||...+..|++.|.  +|+++|++++|.+.+-.        .|++... .....++.+|+|+ ++++++|
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ad   78 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDAD   78 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCC
Confidence            799999999999999999999984  99999999998874321        1221111 1124468899998 5799999


Q ss_pred             EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCC-eEEEEE-cCCcchHHHHHHHHhCCCCCcEeeecCCccHH
Q 018760          108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPD-CILLIV-ANPVDILTYVAWKLSGLPSNRVIGSGTNLDSS  185 (350)
Q Consensus       108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~-a~viv~-tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~  185 (350)
                      ++++++|+|.++..+      .+...+...++.|.++.+. +++++- |-|++....+-.+..-..+.+-|++..+.|-.
T Consensus        79 v~fIavgTP~~~dg~------aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFL  152 (414)
T COG1004          79 VVFIAVGTPPDEDGS------ADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFL  152 (414)
T ss_pred             EEEEEcCCCCCCCCC------ccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHh
Confidence            999999999887332      2467778888888887655 666666 47999877766544322233456676777777


Q ss_pred             HHHHHHHHHcCCCCcceEEEEEeecC
Q 018760          186 RFRFLLADHLDVNAQDVQAYIVGEHG  211 (350)
Q Consensus       186 r~~~~la~~l~v~p~~v~~~v~G~hg  211 (350)
                      |--..+.+.+  .|+.   .|+|..+
T Consensus       153 REG~Av~D~~--~PdR---IViG~~~  173 (414)
T COG1004         153 REGSAVYDFL--YPDR---IVIGVRS  173 (414)
T ss_pred             cCcchhhhcc--CCCe---EEEccCC
Confidence            7666666665  4533   5777543

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.28  E-value=2.2e-11  Score=106.96  Aligned_cols=122  Identities=21%  Similarity=0.305  Sum_probs=84.0

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh------cC-------CCceEEEcCCccccCC
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA------FL-------PRTKILASVDYAVTAG  105 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~------~~-------~~~~v~~t~~~~al~~  105 (350)
                      ||+|||||.||..+|..++..|+  +|+|+|.+++.++.....+.+...      ..       ...++..++|++++.+
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~~   78 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAVD   78 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGCT
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHhh
Confidence            79999999999999999999996  999999999877654444433110      00       1246777889987779


Q ss_pred             CCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          106 SDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       106 aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                      ||+||.++              .++.++.+++..++.+++|+. .|++||.+.+...-+..... .|+|++|+
T Consensus        79 adlViEai--------------~E~l~~K~~~~~~l~~~~~~~-~ilasnTSsl~i~~la~~~~-~p~R~ig~  135 (180)
T PF02737_consen   79 ADLVIEAI--------------PEDLELKQELFAELDEICPPD-TILASNTSSLSISELAAALS-RPERFIGM  135 (180)
T ss_dssp             ESEEEE-S---------------SSHHHHHHHHHHHHCCS-TT-SEEEE--SSS-HHHHHTTSS-TGGGEEEE
T ss_pred             hheehhhc--------------cccHHHHHHHHHHHHHHhCCC-ceEEecCCCCCHHHHHhccC-cCceEEEE
Confidence            99999995              247899999999999997443 34789988884433332333 46777766

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.17  E-value=2.9e-10  Score=107.07  Aligned_cols=124  Identities=15%  Similarity=0.178  Sum_probs=88.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh----cC---------CCceEEEcCCcccc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA----FL---------PRTKILASVDYAVT  103 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~----~~---------~~~~v~~t~~~~al  103 (350)
                      ..||+|||+|.||..+|..++..|+  +|+|+|++++.++.....+.....    ..         ...++..+++++++
T Consensus         5 ~~~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~   82 (286)
T PRK07819          5 IQRVGVVGAGQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF   82 (286)
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh
Confidence            3599999999999999999999996  999999999887654433332211    00         12356667788889


Q ss_pred             CCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          104 AGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                      ++||+||.++              .++.++.+++...++++| +.. .|++||...+....+...+.. |.|++|+
T Consensus        83 ~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~-~il~snTS~~~~~~la~~~~~-~~r~~g~  142 (286)
T PRK07819         83 ADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPD-AVLASNTSSIPIMKLAAATKR-PGRVLGL  142 (286)
T ss_pred             CCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCC-cEEEECCCCCCHHHHHhhcCC-CccEEEE
Confidence            9999999995              346788888888999986 433 345888887754444444332 4555543

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=99.16  E-value=3e-10  Score=106.89  Aligned_cols=143  Identities=22%  Similarity=0.320  Sum_probs=104.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHH----hhc---------CCCceEEEcCCcccc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHA----AAF---------LPRTKILASVDYAVT  103 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~----~~~---------~~~~~v~~t~~~~al  103 (350)
                      -+||+|||||.||+.+|+.++..|+  +|+|+|++++.++.....+...    ...         ....++..+++++++
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l   80 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAAL   80 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHh
Confidence            3699999999999999999999776  9999999987665433322221    110         013456667778899


Q ss_pred             CCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcchH-HHHHHHHhCCCCCcEeee---
Q 018760          104 AGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDIL-TYVAWKLSGLPSNRVIGS---  178 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~-~~~~~~~sg~~~~rviG~---  178 (350)
                      ++||+||.++              .+|.++.+++..++.+++ |++  |++||.+.+. +.+. ..+ ..|+|++|+   
T Consensus        81 ~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~a--IlASNTSsl~it~ia-~~~-~rper~iG~HFf  142 (307)
T COG1250          81 KDADLVIEAV--------------VEDLELKKQVFAELEALAKPDA--ILASNTSSLSITELA-EAL-KRPERFIGLHFF  142 (307)
T ss_pred             ccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCc--EEeeccCCCCHHHHH-HHh-CCchhEEEEecc
Confidence            9999999995              468999999999999997 665  5699999984 5444 333 346777743   


Q ss_pred             ---------------cCCccHHHHHHHHHHHcCCCC
Q 018760          179 ---------------GTNLDSSRFRFLLADHLDVNA  199 (350)
Q Consensus       179 ---------------g~~ld~~r~~~~la~~l~v~p  199 (350)
                                     -|.-++...-..+++.++..|
T Consensus       143 NP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~  178 (307)
T COG1250         143 NPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTP  178 (307)
T ss_pred             CCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCC
Confidence                           344556666777888888665

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.14  E-value=5.6e-10  Score=106.40  Aligned_cols=122  Identities=12%  Similarity=0.138  Sum_probs=87.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh----c-----CCCceEEEcCCc-cccCCCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA----F-----LPRTKILASVDY-AVTAGSD  107 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~----~-----~~~~~v~~t~~~-~al~~aD  107 (350)
                      .||+|||+|.||+.+|..++..|+  +|+|+|++++.++.....+.....    .     ....++..++++ +++++||
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aD   85 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADAD   85 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCC
Confidence            589999999999999999999996  999999998766543332322111    0     012355666677 5789999


Q ss_pred             EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEee
Q 018760          108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIG  177 (350)
Q Consensus       108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG  177 (350)
                      +|+.++              .++..+.+++...+.+++|... |+.||.+.+....+..... .|.|++|
T Consensus        86 lViEav--------------pE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l~~s~la~~~~-~p~R~~g  139 (321)
T PRK07066         86 FIQESA--------------PEREALKLELHERISRAAKPDA-IIASSTSGLLPTDFYARAT-HPERCVV  139 (321)
T ss_pred             EEEECC--------------cCCHHHHHHHHHHHHHhCCCCe-EEEECCCccCHHHHHHhcC-CcccEEE
Confidence            999995              2477888888999999876553 7899999875544444333 3466664

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=99.09  E-value=7.2e-10  Score=116.72  Aligned_cols=145  Identities=21%  Similarity=0.270  Sum_probs=105.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh-------cC------CCceEEEcCCccc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA-------FL------PRTKILASVDYAV  102 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~-------~~------~~~~v~~t~~~~a  102 (350)
                      +..||+|||||.||..+|..++..|+  +|+|+|++++.++.....+.....       ..      ...++..++|+++
T Consensus       334 ~i~~v~ViGaG~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  411 (737)
T TIGR02441       334 PVKTLAVLGAGLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSG  411 (737)
T ss_pred             cccEEEEECCCHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence            34589999999999999999999997  999999999877654333322111       00      1246777888999


Q ss_pred             cCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchH-HHHHHHHhCCCCCcEeee---
Q 018760          103 TAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDIL-TYVAWKLSGLPSNRVIGS---  178 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~-~~~~~~~sg~~~~rviG~---  178 (350)
                      +++||+||.++              .+|.++.+++..++.+++|.. .|++||.+.+. +.++ ..+. .|.|++|+   
T Consensus       412 ~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~-~ilasNTSsl~i~~la-~~~~-~p~r~ig~Hff  474 (737)
T TIGR02441       412 FKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPH-CIIASNTSALPIKDIA-AVSS-RPEKVIGMHYF  474 (737)
T ss_pred             hccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCC-cEEEEcCCCCCHHHHH-hhcC-CccceEEEecc
Confidence            99999999995              358899999999999997554 45689999984 4444 3333 35677753   


Q ss_pred             ---------------cCCccHHHHHHHHHHHcCCCC
Q 018760          179 ---------------GTNLDSSRFRFLLADHLDVNA  199 (350)
Q Consensus       179 ---------------g~~ld~~r~~~~la~~l~v~p  199 (350)
                                     .|..++.-.-..+++.+|..|
T Consensus       475 ~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~p  510 (737)
T TIGR02441       475 SPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVV  510 (737)
T ss_pred             CCcccCceEEEeCCCCCCHHHHHHHHHHHHHCCCeE
Confidence                           355445444566778887765

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=99.08  E-value=1.1e-09  Score=114.90  Aligned_cols=145  Identities=13%  Similarity=0.149  Sum_probs=104.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh----c---C------CCceEEEcCCccc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA----F---L------PRTKILASVDYAV  102 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~----~---~------~~~~v~~t~~~~a  102 (350)
                      +..||+|||||.||..+|..++..|+  +|+|+|++++.++.....+.....    .   .      ...++..++++++
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  389 (714)
T TIGR02437       312 DVKQAAVLGAGIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAG  389 (714)
T ss_pred             ccceEEEECCchHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH
Confidence            44689999999999999999999997  999999999877643332222110    0   0      1246777888888


Q ss_pred             cCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch-HHHHHHHHhCCCCCcEeee---
Q 018760          103 TAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI-LTYVAWKLSGLPSNRVIGS---  178 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~-~~~~~~~~sg~~~~rviG~---  178 (350)
                      +++||+||.++              .++.++.+++..++.++||.. .|++||.+.+ ++.++. .+. .|.|++|+   
T Consensus       390 ~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~-~ilasnTS~l~i~~ia~-~~~-~p~r~ig~Hff  452 (714)
T TIGR02437       390 FDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVRED-AILASNTSTISISLLAK-ALK-RPENFCGMHFF  452 (714)
T ss_pred             hcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCC-cEEEECCCCCCHHHHHh-hcC-CcccEEEEecC
Confidence            99999999995              357899999999999997554 4579999998 455543 333 35677754   


Q ss_pred             ---------------cCCccHHHHHHHHHHHcCCCC
Q 018760          179 ---------------GTNLDSSRFRFLLADHLDVNA  199 (350)
Q Consensus       179 ---------------g~~ld~~r~~~~la~~l~v~p  199 (350)
                                     .|..++.-.-..+++.+|..|
T Consensus       453 ~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~p  488 (714)
T TIGR02437       453 NPVHRMPLVEVIRGEKSSDETIATVVAYASKMGKTP  488 (714)
T ss_pred             CCcccCceEeecCCCCCCHHHHHHHHHHHHHcCCEE
Confidence                           344444444556677777766

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.08  E-value=9.7e-10  Score=115.61  Aligned_cols=144  Identities=15%  Similarity=0.157  Sum_probs=104.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh-------cC------CCceEEEcCCcccc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA-------FL------PRTKILASVDYAVT  103 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~-------~~------~~~~v~~t~~~~al  103 (350)
                      ..||+|||||.||..+|..++..|+  +|+|+|++++.++.....+.....       ..      ...++..++|++++
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~  390 (715)
T PRK11730        313 VKQAAVLGAGIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGF  390 (715)
T ss_pred             cceEEEECCchhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh
Confidence            4589999999999999999999997  999999999877643333222110       00      12467778889889


Q ss_pred             CCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchH-HHHHHHHhCCCCCcEeee----
Q 018760          104 AGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDIL-TYVAWKLSGLPSNRVIGS----  178 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~-~~~~~~~sg~~~~rviG~----  178 (350)
                      ++||+||.++              .++.++.+++..++++++|.. .|++||.+.+. +.++. .+. .|.|++|+    
T Consensus       391 ~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~-~ilasNTSsl~i~~la~-~~~-~p~r~~g~Hff~  453 (715)
T PRK11730        391 ERVDVVVEAV--------------VENPKVKAAVLAEVEQKVRED-TILASNTSTISISLLAK-ALK-RPENFCGMHFFN  453 (715)
T ss_pred             cCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCC-cEEEEcCCCCCHHHHHh-hcC-CCccEEEEecCC
Confidence            9999999995              357899999999999998655 45699999984 55553 333 35677753    


Q ss_pred             --------------cCCccHHHHHHHHHHHcCCCC
Q 018760          179 --------------GTNLDSSRFRFLLADHLDVNA  199 (350)
Q Consensus       179 --------------g~~ld~~r~~~~la~~l~v~p  199 (350)
                                    .|..++.-.-..+++.+|..|
T Consensus       454 P~~~~~lVEvv~g~~T~~~~~~~~~~~~~~lgk~p  488 (715)
T PRK11730        454 PVHRMPLVEVIRGEKTSDETIATVVAYASKMGKTP  488 (715)
T ss_pred             cccccceEEeeCCCCCCHHHHHHHHHHHHHhCCce
Confidence                          344444444455677777766

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=99.06  E-value=1.9e-09  Score=113.20  Aligned_cols=145  Identities=17%  Similarity=0.214  Sum_probs=102.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHh-cCCCCeEEEEeCCccchHHHHHHHHHHhh-------cC------CCceEEEcCCcc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILT-QDFVEELALVDAKADKLRGEMLDLQHAAA-------FL------PRTKILASVDYA  101 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~-~~~~~ev~L~D~~~~~l~~~~~dl~~~~~-------~~------~~~~v~~t~~~~  101 (350)
                      +..||+|||||.||+.+|..++. .|+  +|+|+|++++.++.....+.....       ..      ...++..+++++
T Consensus       303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  380 (699)
T TIGR02440       303 KIKKVGILGGGLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR  380 (699)
T ss_pred             cccEEEEECCcHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH
Confidence            34689999999999999999984 786  999999999876544333322110       00      124677788899


Q ss_pred             ccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchH-HHHHHHHhCCCCCcEeee--
Q 018760          102 VTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDIL-TYVAWKLSGLPSNRVIGS--  178 (350)
Q Consensus       102 al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~-~~~~~~~sg~~~~rviG~--  178 (350)
                      ++++||+||.++              .++.++.+++..++.++++.. .|++||.+.+. +.++. ... .|.|++|+  
T Consensus       381 ~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~-~ilasnTS~l~i~~la~-~~~-~p~r~~g~Hf  443 (699)
T TIGR02440       381 GFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAH-TIFASNTSSLPIGQIAA-AAS-RPENVIGLHY  443 (699)
T ss_pred             HhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCC-cEEEeCCCCCCHHHHHH-hcC-CcccEEEEec
Confidence            999999999995              357899999999999998655 45789999984 44443 333 35677743  


Q ss_pred             ----------------cCCccHHHHHHHHHHHcCCCC
Q 018760          179 ----------------GTNLDSSRFRFLLADHLDVNA  199 (350)
Q Consensus       179 ----------------g~~ld~~r~~~~la~~l~v~p  199 (350)
                                      .|..++.-.-..+++.+|..|
T Consensus       444 fnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~~gk~p  480 (699)
T TIGR02440       444 FSPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTP  480 (699)
T ss_pred             CCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence                            344444444456677777766

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.02  E-value=3.5e-09  Score=99.47  Aligned_cols=123  Identities=22%  Similarity=0.289  Sum_probs=82.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH----HHhhcC---------CCceEEEcCCccccC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ----HAAAFL---------PRTKILASVDYAVTA  104 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~----~~~~~~---------~~~~v~~t~~~~al~  104 (350)
                      .||+|||+|.||.+++..++..+.  +|+++|+++++++.....++    ......         ...++..++++++++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~   81 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDLK   81 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhc
Confidence            489999999999999999999986  89999999987753221111    111000         012566677887899


Q ss_pred             CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          105 GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       105 ~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                      +||+||+++.              .+..+.+++.+.+.++++...+ ++||-+++....+.+..+. +.|++|+
T Consensus        82 ~aDlVi~av~--------------e~~~~k~~~~~~l~~~~~~~~i-l~s~ts~~~~~~la~~~~~-~~r~ig~  139 (282)
T PRK05808         82 DADLVIEAAT--------------ENMDLKKKIFAQLDEIAKPEAI-LATNTSSLSITELAAATKR-PDKVIGM  139 (282)
T ss_pred             cCCeeeeccc--------------ccHHHHHHHHHHHHhhCCCCcE-EEECCCCCCHHHHHHhhCC-CcceEEe
Confidence            9999999952              2456667777788887654433 3788877754444444432 3466654

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.01  E-value=2.9e-09  Score=111.93  Aligned_cols=145  Identities=16%  Similarity=0.187  Sum_probs=103.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHH-hcCCCCeEEEEeCCccchHHHHHHHHHHhh-------cC------CCceEEEcCCcc
Q 018760           36 RHTKISVIGTGNVGMAIAQTIL-TQDFVEELALVDAKADKLRGEMLDLQHAAA-------FL------PRTKILASVDYA  101 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~-~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~-------~~------~~~~v~~t~~~~  101 (350)
                      +..||+|||||.||..+|..++ ..|+  +|+|+|++++.++.....+.....       ..      ...++..+++++
T Consensus       308 ~i~~v~ViGaG~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~  385 (708)
T PRK11154        308 PVNKVGVLGGGLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYR  385 (708)
T ss_pred             cccEEEEECCchhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChH
Confidence            3468999999999999999998 7786  999999998866543333322110       00      124677788888


Q ss_pred             ccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchH-HHHHHHHhCCCCCcEeee--
Q 018760          102 VTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDIL-TYVAWKLSGLPSNRVIGS--  178 (350)
Q Consensus       102 al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~-~~~~~~~sg~~~~rviG~--  178 (350)
                      ++++||+||.++              .+|.++.+++..+++++++.. .|++||.+.+. +.++. ... .|.|++|+  
T Consensus       386 ~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~-~ilasnTS~l~i~~la~-~~~-~p~r~ig~Hf  448 (708)
T PRK11154        386 GFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPH-TIFASNTSSLPIGQIAA-AAA-RPEQVIGLHY  448 (708)
T ss_pred             HhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCC-cEEEECCCCCCHHHHHH-hcC-cccceEEEec
Confidence            999999999995              358899999999999997443 35689999984 44443 333 34677644  


Q ss_pred             ----------------cCCccHHHHHHHHHHHcCCCC
Q 018760          179 ----------------GTNLDSSRFRFLLADHLDVNA  199 (350)
Q Consensus       179 ----------------g~~ld~~r~~~~la~~l~v~p  199 (350)
                                      .|+.++.-.-..+++.+|..|
T Consensus       449 f~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~p  485 (708)
T PRK11154        449 FSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTP  485 (708)
T ss_pred             CCccccCceEEEECCCCCCHHHHHHHHHHHHHcCCce
Confidence                            455555445566677777766

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=99.00  E-value=1.2e-09  Score=96.33  Aligned_cols=148  Identities=19%  Similarity=0.219  Sum_probs=84.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHH--------HHHHhh-cCCCceEEEcCCc-cccCCCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLD--------LQHAAA-FLPRTKILASVDY-AVTAGSD  107 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~d--------l~~~~~-~~~~~~v~~t~~~-~al~~aD  107 (350)
                      |||+|||.|.+|.++|..|+..|.  +|+-+|+|+++++.+...        +..... .....++.+++|. +++++||
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~--~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~ad   78 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGH--QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDAD   78 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTS--EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-S
T ss_pred             CEEEEECCCcchHHHHHHHHhCCC--EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccc
Confidence            799999999999999999999996  999999999877643210        010000 0013567778887 4699999


Q ss_pred             EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEc-CCcchHH----HHHHHHhCCCCCcEeeecCC
Q 018760          108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVA-NPVDILT----YVAWKLSGLPSNRVIGSGTN  181 (350)
Q Consensus       108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~t-NP~~~~~----~~~~~~sg~~~~rviG~g~~  181 (350)
                      ++|+|+++|.+++.+      -+...+.+.++.|.++ .++.++|+-| -|++..-    +++.+.++..  .-|++.-+
T Consensus        79 v~~I~VpTP~~~~~~------~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~--~~f~la~~  150 (185)
T PF03721_consen   79 VVFICVPTPSDEDGS------PDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKK--EDFHLAYS  150 (185)
T ss_dssp             EEEE----EBETTTS------BETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTT--TCEEEEE-
T ss_pred             eEEEecCCCccccCC------ccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccc--cCCeEEEC
Confidence            999999998766432      1334445555555554 4566666664 6888765    3444444432  34566455


Q ss_pred             ccHHHHHHHHHHHc
Q 018760          182 LDSSRFRFLLADHL  195 (350)
Q Consensus       182 ld~~r~~~~la~~l  195 (350)
                      .|..+.-+.+.+..
T Consensus       151 PErl~~G~a~~d~~  164 (185)
T PF03721_consen  151 PERLREGRAIEDFR  164 (185)
T ss_dssp             -----TTSHHHHHH
T ss_pred             CCccCCCCcchhcc
Confidence            55444445555555

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.98  E-value=3.4e-09  Score=107.05  Aligned_cols=146  Identities=20%  Similarity=0.233  Sum_probs=96.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh----cC---------CCceEEEcCCccc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA----FL---------PRTKILASVDYAV  102 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~----~~---------~~~~v~~t~~~~a  102 (350)
                      +..||+|||+|.||..+|..++..|+  +|+++|+++++++.....+++...    ..         ...++..++++++
T Consensus         4 ~~~kV~VIGaG~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~   81 (503)
T TIGR02279         4 NVVTVAVIGAGAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA   81 (503)
T ss_pred             CccEEEEECcCHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH
Confidence            34589999999999999999999996  999999999888654333322111    00         1234666778888


Q ss_pred             cCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee----
Q 018760          103 TAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS----  178 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~----  178 (350)
                      +++||+||.++              .++..+.+.+...+.+++++. .|++||.+.+....+.+... .|.|++|+    
T Consensus        82 l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~-~IlasnTStl~i~~iA~~~~-~p~r~~G~HFf~  145 (503)
T TIGR02279        82 LADAGLVIEAI--------------VENLEVKKALFAQLEELCPAD-TIIASNTSSLSITAIAAGLA-RPERVAGLHFFN  145 (503)
T ss_pred             hCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCC-eEEEECCCCCCHHHHHHhcC-cccceEEEeccC
Confidence            89999999995              245677777778888887665 34788988874333222222 23444443    


Q ss_pred             --------------cCCccHHHHHHHHHHHcCCCC
Q 018760          179 --------------GTNLDSSRFRFLLADHLDVNA  199 (350)
Q Consensus       179 --------------g~~ld~~r~~~~la~~l~v~p  199 (350)
                                    .|..+.......+++.+|..|
T Consensus       146 Papv~~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~p  180 (503)
T TIGR02279       146 PAPVMALVEVVSGLATAAEVAEQLYETALAWGKQP  180 (503)
T ss_pred             ccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCee
Confidence                          223334444455667777655

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.97  E-value=6.8e-09  Score=97.80  Aligned_cols=124  Identities=17%  Similarity=0.255  Sum_probs=82.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh-------cC-------CCceEEEcCCc-c
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA-------FL-------PRTKILASVDY-A  101 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~-------~~-------~~~~v~~t~~~-~  101 (350)
                      .+||+|||+|.||..+|..++..|.  +|+++|+++++++.....+.+...       ..       ...++..++|+ +
T Consensus         3 ~~kIaViGaG~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~   80 (287)
T PRK08293          3 IKNVTVAGAGVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAE   80 (287)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHH
Confidence            3589999999999999999999885  899999998877644333222111       00       01356667787 4


Q ss_pred             ccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          102 VTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       102 al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                      ++++||+||+++.              ++.++.+++.+++.+++++.. ++++|.+......+.+... .+.|++|+
T Consensus        81 a~~~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~-ii~sntSt~~~~~~~~~~~-~~~r~vg~  141 (287)
T PRK08293         81 AVKDADLVIEAVP--------------EDPEIKGDFYEELAKVAPEKT-IFATNSSTLLPSQFAEATG-RPEKFLAL  141 (287)
T ss_pred             HhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCC-EEEECcccCCHHHHHhhcC-CcccEEEE
Confidence            6899999999963              245667777777877765443 3467877764433333333 24566654

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.95  E-value=5.4e-09  Score=105.84  Aligned_cols=146  Identities=18%  Similarity=0.163  Sum_probs=95.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh----cC---------CCceEEEcCCccc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA----FL---------PRTKILASVDYAV  102 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~----~~---------~~~~v~~t~~~~a  102 (350)
                      +..||+|||+|.||..+|..++..|+  +|+++|+++++++.....+.....    ..         ...++..++++++
T Consensus         6 ~i~~V~VIGaG~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~   83 (507)
T PRK08268          6 SIATVAVIGAGAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD   83 (507)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence            34589999999999999999999996  999999999887654333322111    00         0224666778888


Q ss_pred             cCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee----
Q 018760          103 TAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS----  178 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~----  178 (350)
                      +++||+||.++.              ++..+.+.+...+.+.++.. .|++||.+.+-...+..... .|+|++|+    
T Consensus        84 ~~~aDlViEav~--------------E~~~vK~~vf~~l~~~~~~~-ailasntStl~i~~la~~~~-~p~r~~G~hff~  147 (507)
T PRK08268         84 LADCDLVVEAIV--------------ERLDVKQALFAQLEAIVSPD-CILATNTSSLSITAIAAALK-HPERVAGLHFFN  147 (507)
T ss_pred             hCCCCEEEEcCc--------------ccHHHHHHHHHHHHhhCCCC-cEEEECCCCCCHHHHHhhcC-CcccEEEEeecC
Confidence            899999999952              45677777777788887443 34567777763333333332 24555543    


Q ss_pred             --------------cCCccHHHHHHHHHHHcCCCC
Q 018760          179 --------------GTNLDSSRFRFLLADHLDVNA  199 (350)
Q Consensus       179 --------------g~~ld~~r~~~~la~~l~v~p  199 (350)
                                    +|..+.......+++.++..|
T Consensus       148 Pa~v~~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~p  182 (507)
T PRK08268        148 PVPLMKLVEVVSGLATDPAVADALYALARAWGKTP  182 (507)
T ss_pred             CcccCeeEEEeCCCCCCHHHHHHHHHHHHHcCCce
Confidence                          133334333455667777655

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.94  E-value=6.9e-09  Score=97.94  Aligned_cols=123  Identities=25%  Similarity=0.329  Sum_probs=78.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh----cC--C-------CceEEEcCCcccc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA----FL--P-------RTKILASVDYAVT  103 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~----~~--~-------~~~v~~t~~~~al  103 (350)
                      .+||+|||+|.||..+|..|+..|.  +|+++|+++++++.....+.....    ..  +       ..++..+++++++
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   81 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLEDL   81 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHHh
Confidence            4689999999999999999999986  999999999877654333322110    00  0       1235666777889


Q ss_pred             CCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          104 AGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                      ++||+||+++..              +..+.+.+.+.+.+++ |++++  +||.+.+....+.+... .+.|++|+
T Consensus        82 ~~aD~Vieavpe--------------~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~s~la~~~~-~~~r~~g~  140 (292)
T PRK07530         82 ADCDLVIEAATE--------------DETVKRKIFAQLCPVLKPEAIL--ATNTSSISITRLASATD-RPERFIGI  140 (292)
T ss_pred             cCCCEEEEcCcC--------------CHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHHhhcC-CcccEEEe
Confidence            999999999631              2344445555666665 55543  46666653223333322 23455543

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.92  E-value=1.3e-08  Score=96.04  Aligned_cols=122  Identities=21%  Similarity=0.321  Sum_probs=80.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHH-------HhhcC---------CCceEEEcCCcc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH-------AAAFL---------PRTKILASVDYA  101 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~-------~~~~~---------~~~~v~~t~~~~  101 (350)
                      .||+|||+|.||..++..|+..|.  +|+++|+++++++.....+..       .....         ...++..+++.+
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~   81 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE   81 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence            589999999999999999999996  899999999887643322221       10000         012355566677


Q ss_pred             ccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCC-CeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          102 VTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSP-DCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       102 al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                      ++++||+||+++.              .+..+.+++.+++.++++ +++  ++||...+....+..... .+.|++|+
T Consensus        82 ~~~~aDlVieav~--------------e~~~~k~~~~~~l~~~~~~~~i--l~S~tsg~~~~~la~~~~-~~~r~ig~  142 (291)
T PRK06035         82 SLSDADFIVEAVP--------------EKLDLKRKVFAELERNVSPETI--IASNTSGIMIAEIATALE-RKDRFIGM  142 (291)
T ss_pred             HhCCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeE--EEEcCCCCCHHHHHhhcC-CcccEEEE
Confidence            8999999999963              234556667777877764 453  357777664443333322 24566655

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.91  E-value=2e-08  Score=94.95  Aligned_cols=123  Identities=20%  Similarity=0.251  Sum_probs=77.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh----hcC---------CCceEEEcCCcccc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA----AFL---------PRTKILASVDYAVT  103 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~----~~~---------~~~~v~~t~~~~al  103 (350)
                      ..||+|||+|.||..+|..|+..|.  +|+++|.++++++.....+....    ...         ....+..+++++++
T Consensus         4 ~~~V~vIG~G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   81 (295)
T PLN02545          4 IKKVGVVGAGQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEEL   81 (295)
T ss_pred             cCEEEEECCCHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHh
Confidence            3589999999999999999999985  99999999987753332222111    000         01134455667889


Q ss_pred             CCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          104 AGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                      ++||+||+++.              ++..+...+...+.++. |+++  ++||-+.+....+.+..+ .+.|++|+
T Consensus        82 ~~aD~Vieav~--------------e~~~~k~~v~~~l~~~~~~~~i--l~s~tS~i~~~~l~~~~~-~~~r~~g~  140 (295)
T PLN02545         82 RDADFIIEAIV--------------ESEDLKKKLFSELDRICKPSAI--LASNTSSISITRLASATQ-RPQQVIGM  140 (295)
T ss_pred             CCCCEEEEcCc--------------cCHHHHHHHHHHHHhhCCCCcE--EEECCCCCCHHHHHhhcC-CCcceEEE
Confidence            99999999952              23445555556666654 5553  457766663333333322 23455554

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.86  E-value=1.2e-08  Score=102.13  Aligned_cols=126  Identities=18%  Similarity=0.183  Sum_probs=82.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHH--------HHHHhhcCCCceEEEcCCc-cccCCCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLD--------LQHAAAFLPRTKILASVDY-AVTAGSD  107 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~d--------l~~~~~~~~~~~v~~t~~~-~al~~aD  107 (350)
                      +|||+|||+|.||.++|..|++.|...+|+.+|+++++++.+...        +.+........++..|+++ +++++||
T Consensus         1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad   80 (473)
T PLN02353          1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD   80 (473)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence            489999999999999999999986444899999999887753211        1111000012247777886 5799999


Q ss_pred             EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCC-eEEEEE-cCCcchHHHH
Q 018760          108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPD-CILLIV-ANPVDILTYV  163 (350)
Q Consensus       108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~-a~viv~-tNP~~~~~~~  163 (350)
                      ++|+|+++|.+++....+ -.-+...+.+.++.|.++.++ .+||+- |.|.+..-.+
T Consensus        81 vi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~  137 (473)
T PLN02353         81 IVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI  137 (473)
T ss_pred             EEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHH
Confidence            999999999754210000 011345566677777776444 444444 5788876444

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.82  E-value=2.4e-09  Score=94.87  Aligned_cols=126  Identities=23%  Similarity=0.331  Sum_probs=91.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHH----hh--cC------------CCceEE
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHA----AA--FL------------PRTKIL   95 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~----~~--~~------------~~~~v~   95 (350)
                      +.+...|+|||||.||+.+|+..++.|+  .|+|+|.+++.|.....-++..    ..  +.            ...++.
T Consensus         8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~   85 (298)
T KOG2304|consen    8 MAEIKNVAIVGAGQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIK   85 (298)
T ss_pred             cccccceEEEcccccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH
Confidence            3445679999999999999999999997  9999999998776443333321    10  00            012344


Q ss_pred             EcCCc-cccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch-HHHHHHHHhCCCCC
Q 018760           96 ASVDY-AVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI-LTYVAWKLSGLPSN  173 (350)
Q Consensus        96 ~t~~~-~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~-~~~~~~~~sg~~~~  173 (350)
                      .++|. +++.+||+||.+              +.+|+.+.+++.+++.+.|+.. .|..||.+.+ ++.++. .+ -+|.
T Consensus        86 ~~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~-~il~tNTSSl~lt~ia~-~~-~~~s  148 (298)
T KOG2304|consen   86 TSTNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSS-TILATNTSSLSLTDIAS-AT-QRPS  148 (298)
T ss_pred             HcCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccc-eEEeecccceeHHHHHh-hc-cChh
Confidence            45676 578899999888              4679999999999999999765 4578999988 555543 22 2456


Q ss_pred             cEeee
Q 018760          174 RVIGS  178 (350)
Q Consensus       174 rviG~  178 (350)
                      |+.|+
T Consensus       149 rf~Gl  153 (298)
T KOG2304|consen  149 RFAGL  153 (298)
T ss_pred             hhcee
Confidence            77766

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.80  E-value=1.9e-07  Score=84.50  Aligned_cols=104  Identities=13%  Similarity=0.173  Sum_probs=69.1

Q ss_pred             CeEEEEc-CChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhc-CCCceEEEcCCccccCCCCEEEEecCC
Q 018760           38 TKISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILASVDYAVTAGSDLCIVTAGA  115 (350)
Q Consensus        38 ~KI~IIG-AG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~-~~~~~v~~t~~~~al~~aDiVIi~~g~  115 (350)
                      |||+||| +|.||++++..|++.+  .+|.++++++++++....+..+.... ....++..+++.++++++|+||+++..
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G--~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~   78 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAG--NKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPW   78 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCC--CEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCH
Confidence            6999997 7999999999999988  49999999998877655444332211 011234434445778999999999631


Q ss_pred             CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch
Q 018760          116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI  159 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~  159 (350)
                                      ..+.++++.+...-++.++|.++||.+.
T Consensus        79 ----------------~~~~~~l~~l~~~l~~~vvI~~~ngi~~  106 (219)
T TIGR01915        79 ----------------DHVLKTLESLRDELSGKLVISPVVPLAS  106 (219)
T ss_pred             ----------------HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence                            1122233333332234678889999764

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.79  E-value=6.1e-08  Score=92.30  Aligned_cols=124  Identities=18%  Similarity=0.264  Sum_probs=76.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC--------CCceEEEcCCcc-ccCCCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL--------PRTKILASVDYA-VTAGSD  107 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~--------~~~~v~~t~~~~-al~~aD  107 (350)
                      .+||+|||+|.||..++..|+..+.  +|+++|+++++++.....+.......        ...++..+++.+ ++++||
T Consensus         4 ~~~I~vIGaG~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aD   81 (311)
T PRK06130          4 IQNLAIIGAGTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGAD   81 (311)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCC
Confidence            4689999999999999999999885  89999999987765443332221100        012345556664 689999


Q ss_pred             EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                      +||+++..              ......++...+..++++.. +++||.+.+....+.+... .+.|++|+
T Consensus        82 lVi~av~~--------------~~~~~~~v~~~l~~~~~~~~-ii~s~tsg~~~~~l~~~~~-~~~~~ig~  136 (311)
T PRK06130         82 LVIEAVPE--------------KLELKRDVFARLDGLCDPDT-IFATNTSGLPITAIAQAVT-RPERFVGT  136 (311)
T ss_pred             EEEEeccC--------------cHHHHHHHHHHHHHhCCCCc-EEEECCCCCCHHHHHhhcC-CcccEEEE
Confidence            99999631              22333444455555544332 3446666654333333322 23566654

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.76  E-value=6.4e-08  Score=91.19  Aligned_cols=105  Identities=27%  Similarity=0.364  Sum_probs=69.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhc------C-------CCceEEEcCCc-ccc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF------L-------PRTKILASVDY-AVT  103 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~------~-------~~~~v~~t~~~-~al  103 (350)
                      .||+|||+|.||..+|..|+..+.  +|+++|+++++++.....+......      .       ...++..++++ +++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   79 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV   79 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence            489999999999999999999985  8999999998876543332221100      0       01235556677 579


Q ss_pred             CCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch
Q 018760          104 AGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI  159 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~  159 (350)
                      ++||+||+++..              +..+.+.+...+.++++... ++++|.+.+
T Consensus        80 ~~aD~Vi~avpe--------------~~~~k~~~~~~l~~~~~~~~-il~~~tSt~  120 (288)
T PRK09260         80 ADADLVIEAVPE--------------KLELKKAVFETADAHAPAEC-YIATNTSTM  120 (288)
T ss_pred             cCCCEEEEeccC--------------CHHHHHHHHHHHHhhCCCCc-EEEEcCCCC
Confidence            999999999631              23444555556666654432 245565554

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.70  E-value=1.4e-07  Score=95.51  Aligned_cols=112  Identities=20%  Similarity=0.196  Sum_probs=75.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh---h------cCCCceEEEcCCc-cccCCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA---A------FLPRTKILASVDY-AVTAGS  106 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~---~------~~~~~~v~~t~~~-~al~~a  106 (350)
                      .+||+|||+|.||.++|..|+..|+  +|+++|+++++++.....+....   .      .....++..++++ +++++|
T Consensus         4 i~kIavIG~G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~a   81 (495)
T PRK07531          4 IMKAACIGGGVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGA   81 (495)
T ss_pred             cCEEEEECcCHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCC
Confidence            3589999999999999999999996  99999999987764322111110   0      0011235556677 579999


Q ss_pred             CEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHH
Q 018760          107 DLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAW  165 (350)
Q Consensus       107 DiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~  165 (350)
                      |+||.++.              ++..+.+.+...+.+++++. .|+.||.+++....+.
T Consensus        82 D~Vieavp--------------e~~~vk~~l~~~l~~~~~~~-~iI~SsTsgi~~s~l~  125 (495)
T PRK07531         82 DWIQESVP--------------ERLDLKRRVLAEIDAAARPD-ALIGSSTSGFLPSDLQ  125 (495)
T ss_pred             CEEEEcCc--------------CCHHHHHHHHHHHHhhCCCC-cEEEEcCCCCCHHHHH
Confidence            99999952              23455556666677776555 3567888776443333

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.66  E-value=3.1e-08  Score=85.04  Aligned_cols=110  Identities=22%  Similarity=0.398  Sum_probs=72.6

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh---cCC----CceEEEcCCc-cccCCCCEEE
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA---FLP----RTKILASVDY-AVTAGSDLCI  110 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~---~~~----~~~v~~t~~~-~al~~aDiVI  110 (350)
                      ||+|+|||+.|.++|..|+.++.  +|.|++++++.++    ++++...   +.+    ..++..++|. +++++||+||
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~--~V~l~~~~~~~~~----~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Ii   74 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGH--EVTLWGRDEEQIE----EINETRQNPKYLPGIKLPENIKATTDLEEALEDADIII   74 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTE--EEEEETSCHHHHH----HHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHcCC--EEEEEeccHHHHH----HHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEE
Confidence            89999999999999999999994  9999999986555    3443221   111    2356677887 6799999999


Q ss_pred             EecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcC-----CcchHHHHHHHHhCC
Q 018760          111 VTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVAN-----PVDILTYVAWKLSGL  170 (350)
Q Consensus       111 i~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tN-----P~~~~~~~~~~~sg~  170 (350)
                      ++..                ....++++++|..+- ++..+++++-     ..-.+..++.+..+.
T Consensus        75 iavP----------------s~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~  124 (157)
T PF01210_consen   75 IAVP----------------SQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPI  124 (157)
T ss_dssp             E-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSS
T ss_pred             eccc----------------HHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhh
Confidence            9963                233455666677664 4555655542     223466777666543

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.65  E-value=2.2e-07  Score=88.51  Aligned_cols=110  Identities=23%  Similarity=0.274  Sum_probs=71.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH----HHhh--cC-------CCceEEEcCCc-ccc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ----HAAA--FL-------PRTKILASVDY-AVT  103 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~----~~~~--~~-------~~~~v~~t~~~-~al  103 (350)
                      +||+|||+|.||.+++..|+..|.  +|+++|+++++++.....+.    ....  ..       ...++..++++ +++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~   80 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAV   80 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhh
Confidence            589999999999999999999986  89999999876654322111    1100  00       01235556677 468


Q ss_pred             CCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHH
Q 018760          104 AGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVA  164 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~  164 (350)
                      ++||+|+.+...              +..+.+.+...+.+.+++.+++ .||........+
T Consensus        81 ~~ad~Vi~avpe--------------~~~~k~~~~~~l~~~~~~~~ii-~ssts~~~~~~l  126 (308)
T PRK06129         81 ADADYVQESAPE--------------NLELKRALFAELDALAPPHAIL-ASSTSALLASAF  126 (308)
T ss_pred             CCCCEEEECCcC--------------CHHHHHHHHHHHHHhCCCcceE-EEeCCCCCHHHH
Confidence            999999999621              2334444555566666655444 576665544333

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.61  E-value=9.1e-08  Score=74.79  Aligned_cols=94  Identities=19%  Similarity=0.332  Sum_probs=64.8

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCC-CCeEEEE-eCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCC
Q 018760           39 KISVIGTGNVGMAIAQTILTQDF-VEELALV-DAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~-~~ev~L~-D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~  116 (350)
                      ||+|||+|+||.+++..|+..+. -.+|.++ ++++++++.    +....    ...+...+..++++.||+||+++.  
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~----~~~~~----~~~~~~~~~~~~~~~advvilav~--   70 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAE----LAKEY----GVQATADDNEEAAQEADVVILAVK--   70 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHH----HHHHC----TTEEESEEHHHHHHHTSEEEE-S---
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHH----HHHhh----ccccccCChHHhhccCCEEEEEEC--
Confidence            89999999999999999999883 2388866 999987763    44332    234442234478899999999962  


Q ss_pred             cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          117 QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       117 ~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                        |            ..+.++++.+....++.++|-++||
T Consensus        71 --p------------~~~~~v~~~i~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   71 --P------------QQLPEVLSEIPHLLKGKLVISIAAG   96 (96)
T ss_dssp             --G------------GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred             --H------------HHHHHHHHHHhhccCCCEEEEeCCC
Confidence              2            2234445555444678888888876

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases

Probab=98.56  E-value=6.3e-07  Score=81.90  Aligned_cols=66  Identities=17%  Similarity=0.187  Sum_probs=51.1

Q ss_pred             HHHHHHHHhcCCCeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHH
Q 018760          274 ANLARSIIRDQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKT  340 (350)
Q Consensus       274 ~~ii~ai~~~~~~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~  340 (350)
                      ..++.+|.++.+.++.+||.|+|.. ++| +|.++++||+|+++|++++...+|++....+++.....
T Consensus       140 ~~~i~~i~~~~~~~~~vNv~N~G~I~nLp-~davVEvp~~v~~~Gi~P~~~g~lP~~~~~li~~~~~~  206 (232)
T PF11975_consen  140 EAAIEAIYNDKPKRFVVNVPNNGAIPNLP-DDAVVEVPCYVDGDGIHPVAVGPLPPAIAGLIQQVKAY  206 (232)
T ss_dssp             HHHHHHHHHSSEEEEEEEEE-TTSSTTS--TTSEEEEEEEEETTEEEEB-SB---HHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCeEEEEECCCCCccCCCC-CCcEEEEEEEEcCCeeEeccCCCCCHHHHHHHHHHHHH
Confidence            4456666999999999999999995 898 69999999999999999999999999998876655443

It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.50  E-value=6.8e-07  Score=87.69  Aligned_cols=119  Identities=19%  Similarity=0.238  Sum_probs=75.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHH--------HHHHhhcCCCceEEEcCCc-cccCCCCE
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLD--------LQHAAAFLPRTKILASVDY-AVTAGSDL  108 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~d--------l~~~~~~~~~~~v~~t~~~-~al~~aDi  108 (350)
                      |||+|||+|.||.++|..++. |.  +|+.+|+++++++.....        +++... ....++..+++. +++++||+
T Consensus         1 mkI~VIGlGyvGl~~A~~lA~-G~--~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~-~~~~~l~~t~~~~~~~~~ad~   76 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIAQ-NH--EVVALDILPSRVAMLNDRISPIVDKEIQQFLQ-SDKIHFNATLDKNEAYRDADY   76 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CC--cEEEEECCHHHHHHHHcCCCCCCCcCHHHHHH-hCCCcEEEecchhhhhcCCCE
Confidence            699999999999999987775 63  899999999887743321        111100 013356555565 56899999


Q ss_pred             EEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc-CCcchHHHHHH
Q 018760          109 CIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA-NPVDILTYVAW  165 (350)
Q Consensus       109 VIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t-NP~~~~~~~~~  165 (350)
                      ||++++.|.......     -+...+++.++.|.+..|+.++|+-| -|.+..-.+..
T Consensus        77 vii~Vpt~~~~k~~~-----~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~  129 (388)
T PRK15057         77 VIIATPTDYDPKTNY-----FNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHK  129 (388)
T ss_pred             EEEeCCCCCccCCCC-----cChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHH
Confidence            999988764221111     13344444445555545666666664 67777655543

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.48  E-value=1.3e-06  Score=82.74  Aligned_cols=130  Identities=18%  Similarity=0.282  Sum_probs=89.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHH--hh-cC----CCceEEEcCCc-cccCCCCE
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHA--AA-FL----PRTKILASVDY-AVTAGSDL  108 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~--~~-~~----~~~~v~~t~~~-~al~~aDi  108 (350)
                      ++||+|||+|+-|+++|..|+.++  .+|+|..++++..+    +++..  .. |.    .+..+.+++|. +++++||+
T Consensus         1 ~~kI~ViGaGswGTALA~~la~ng--~~V~lw~r~~~~~~----~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~   74 (329)
T COG0240           1 MMKIAVIGAGSWGTALAKVLARNG--HEVRLWGRDEEIVA----EINETRENPKYLPGILLPPNLKATTDLAEALDGADI   74 (329)
T ss_pred             CceEEEEcCChHHHHHHHHHHhcC--CeeEEEecCHHHHH----HHHhcCcCccccCCccCCcccccccCHHHHHhcCCE
Confidence            479999999999999999999999  49999999987555    34432  11 22    24567788887 67889999


Q ss_pred             EEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEc-----CCcchHHHHHHHHhCCCCCcEeeecCCc
Q 018760          109 CIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVA-----NPVDILTYVAWKLSGLPSNRVIGSGTNL  182 (350)
Q Consensus       109 VIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~t-----NP~~~~~~~~~~~sg~~~~rviG~g~~l  182 (350)
                      ||++..                ...++++++++..+ .++..++.+|     ++...+++++.+..+  .++ +++-. -
T Consensus        75 iv~avP----------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~--~~~-~~vLS-G  134 (329)
T COG0240          75 IVIAVP----------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELP--DNP-IAVLS-G  134 (329)
T ss_pred             EEEECC----------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcC--CCe-EEEEE-C
Confidence            999963                34566667777544 5777888887     234456777777643  334 44412 2


Q ss_pred             cHHHHHHHHHHH
Q 018760          183 DSSRFRFLLADH  194 (350)
Q Consensus       183 d~~r~~~~la~~  194 (350)
                      +  .+-.++|+.
T Consensus       135 P--s~A~EVa~g  144 (329)
T COG0240         135 P--SFAKEVAQG  144 (329)
T ss_pred             c--cHHHHHhcC
Confidence            2  345556554

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.47  E-value=1.8e-06  Score=76.59  Aligned_cols=96  Identities=21%  Similarity=0.291  Sum_probs=66.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccc-hHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADK-LRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGA  115 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~-l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~  115 (350)
                      +|+++|+|+|++|.+++..++..+.  ||.+-.++.++ +++....+        ...++..+..++.+.||+||+++.+
T Consensus         1 m~~~~i~GtGniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~l--------~~~i~~~~~~dA~~~aDVVvLAVP~   70 (211)
T COG2085           1 MMIIAIIGTGNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAAL--------GPLITGGSNEDAAALADVVVLAVPF   70 (211)
T ss_pred             CcEEEEeccChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHhh--------ccccccCChHHHHhcCCEEEEeccH
Confidence            5799999999999999999999995  99988776543 33222111        2236656667899999999999743


Q ss_pred             CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc
Q 018760          116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD  158 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~  158 (350)
                      .            ....+    .+.+...-.+-++|-.|||.+
T Consensus        71 ~------------a~~~v----~~~l~~~~~~KIvID~tnp~~   97 (211)
T COG2085          71 E------------AIPDV----LAELRDALGGKIVIDATNPIE   97 (211)
T ss_pred             H------------HHHhH----HHHHHHHhCCeEEEecCCCcc
Confidence            2            22333    344444333677888999953

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.46  E-value=2.3e-06  Score=82.70  Aligned_cols=111  Identities=15%  Similarity=0.270  Sum_probs=75.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh---hcCC-----CceEEEcCCc-cccC
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA---AFLP-----RTKILASVDY-AVTA  104 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~---~~~~-----~~~v~~t~~~-~al~  104 (350)
                      .+++|||+|||+|++|++++..|+..+   +++++.++++..+.    ++...   .+.+     ..++..++|. ++++
T Consensus         4 ~~~~mkI~IiGaGa~G~alA~~La~~g---~v~l~~~~~~~~~~----i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~   76 (341)
T PRK12439          4 AKREPKVVVLGGGSWGTTVASICARRG---PTLQWVRSAETADD----INDNHRNSRYLGNDVVLSDTLRATTDFAEAAN   76 (341)
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCC---CEEEEeCCHHHHHH----HHhcCCCcccCCCCcccCCCeEEECCHHHHHh
Confidence            456789999999999999999999887   57888888765543    33211   1111     1245566676 5789


Q ss_pred             CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcch-----HHHHHHHH
Q 018760          105 GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDI-----LTYVAWKL  167 (350)
Q Consensus       105 ~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~-----~~~~~~~~  167 (350)
                      ++|+||+++.                ...++++++++..+ .++..+|.++|..+.     +...+.+.
T Consensus        77 ~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~  129 (341)
T PRK12439         77 CADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEV  129 (341)
T ss_pred             cCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHH
Confidence            9999999963                23345555555554 567778889987764     34555554

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.45  E-value=2.2e-06  Score=85.06  Aligned_cols=115  Identities=13%  Similarity=0.126  Sum_probs=74.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh-cC--------CCceEEEcCCccccC
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA-FL--------PRTKILASVDYAVTA  104 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~-~~--------~~~~v~~t~~~~al~  104 (350)
                      +.++|||+|||.|.||.++|..|+. +  .+|+.||+++++++.    ++.... +.        ...++.++++.++++
T Consensus         3 ~~~~mkI~vIGlGyvGlpmA~~la~-~--~~V~g~D~~~~~ve~----l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~   75 (425)
T PRK15182          3 GIDEVKIAIIGLGYVGLPLAVEFGK-S--RQVVGFDVNKKRILE----LKNGVDVNLETTEEELREARYLKFTSEIEKIK   75 (425)
T ss_pred             CCCCCeEEEECcCcchHHHHHHHhc-C--CEEEEEeCCHHHHHH----HHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHc
Confidence            4566999999999999999999877 4  399999999988764    332110 00        012355666777899


Q ss_pred             CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEE-cCCcchHH
Q 018760          105 GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIV-ANPVDILT  161 (350)
Q Consensus       105 ~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~-tNP~~~~~  161 (350)
                      +||++|++++.|.+....      .+...+....+.|.++ .+..++|+- |-|.+...
T Consensus        76 ~advvii~Vptp~~~~~~------~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~  128 (425)
T PRK15182         76 ECNFYIITVPTPINTYKQ------PDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTE  128 (425)
T ss_pred             CCCEEEEEcCCCCCCCCC------cchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchH
Confidence            999999999988643211      1223333333444443 345666555 45665543

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=98.42  E-value=3.9e-06  Score=78.98  Aligned_cols=91  Identities=20%  Similarity=0.297  Sum_probs=66.9

Q ss_pred             CCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCC
Q 018760           12 PGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR   91 (350)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~   91 (350)
                      -||.||..++.    ....   ..+..||+|+|||.+|+++++.|+..+. .+|+++|++.++++..+.++.+...   .
T Consensus       109 TD~~G~~~~l~----~~~~---~~~~k~vlIlGaGGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~~~~---~  177 (284)
T PRK12549        109 TDWSGFAESFR----RGLP---DASLERVVQLGAGGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNARFP---A  177 (284)
T ss_pred             CCHHHHHHHHH----hhcc---CccCCEEEEECCcHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhCC---C
Confidence            47888887775    2222   2344689999999999999999999885 6899999999999887777765431   2


Q ss_pred             ceEEEcCCc-cccCCCCEEEEec
Q 018760           92 TKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        92 ~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      ..+....+. +.++++|+||.+.
T Consensus       178 ~~~~~~~~~~~~~~~aDiVInaT  200 (284)
T PRK12549        178 ARATAGSDLAAALAAADGLVHAT  200 (284)
T ss_pred             eEEEeccchHhhhCCCCEEEECC
Confidence            333322333 4688999999994

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=98.39  E-value=2.8e-06  Score=73.23  Aligned_cols=64  Identities=25%  Similarity=0.402  Sum_probs=47.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      |+||++||.|.||+.++..|+..++  +|+.||+++++++.    +.+..       +....+. +.+++||+|+.+.
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~g~--~v~~~d~~~~~~~~----~~~~g-------~~~~~s~~e~~~~~dvvi~~v   65 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKAGY--EVTVYDRSPEKAEA----LAEAG-------AEVADSPAEAAEQADVVILCV   65 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHTTT--EEEEEESSHHHHHH----HHHTT-------EEEESSHHHHHHHBSEEEE-S
T ss_pred             CCEEEEEchHHHHHHHHHHHHhcCC--eEEeeccchhhhhh----hHHhh-------hhhhhhhhhHhhcccceEeec
Confidence            5799999999999999999999996  99999999876653    44321       3333455 6788999999995

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.38  E-value=3.4e-06  Score=83.48  Aligned_cols=115  Identities=23%  Similarity=0.295  Sum_probs=73.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHH--------HHHHhhc-CCCceEEEcCCc-cccCCCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLD--------LQHAAAF-LPRTKILASVDY-AVTAGSD  107 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~d--------l~~~~~~-~~~~~v~~t~~~-~al~~aD  107 (350)
                      |||+|||+|.||.++|..|+..|.  +|+.+|+++++++.....        +...... ....++..++++ +++++||
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~--~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~ad   78 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGH--EVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDAD   78 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCC--eEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCC
Confidence            589999999999999999999986  899999999877643211        0000000 001235556676 4689999


Q ss_pred             EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEc-CCcchH
Q 018760          108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVA-NPVDIL  160 (350)
Q Consensus       108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~t-NP~~~~  160 (350)
                      +||++++.|..+...      -+...+.+..+.+.+. .++.++++.| -|.+..
T Consensus        79 vvii~vpt~~~~~~~------~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~  127 (411)
T TIGR03026        79 VIIICVPTPLKEDGS------PDLSYVESAAETIAKHLRKGATVVLESTVPPGTT  127 (411)
T ss_pred             EEEEEeCCCCCCCCC------cChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCch
Confidence            999999877543211      1234444455555554 4556666654 455544

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=98.34  E-value=2.7e-06  Score=80.29  Aligned_cols=105  Identities=25%  Similarity=0.353  Sum_probs=66.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhc-CCC--ceEEEcCCccccCCCCEEEEecC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPR--TKILASVDYAVTAGSDLCIVTAG  114 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~-~~~--~~v~~t~~~~al~~aDiVIi~~g  114 (350)
                      |||+|||+|.||..++..|.+.|.  +|.++|+++++++.....   .... ...  ..+..+++.++++++|+||++..
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k   75 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGH--DVTLVARRGAHLDALNEN---GLRLEDGEITVPVLAADDPAELGPQDLVILAVK   75 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC--eEEEEECChHHHHHHHHc---CCcccCCceeecccCCCChhHcCCCCEEEEecc
Confidence            689999999999999999999884  999999987765532211   1100 000  11122344444589999999964


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHHHH
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILTYV  163 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~~~  163 (350)
                      ...                ..++++.+..+ .++..||...|.++....+
T Consensus        76 ~~~----------------~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l  109 (304)
T PRK06522         76 AYQ----------------LPAALPSLAPLLGPDTPVLFLQNGVGHLEEL  109 (304)
T ss_pred             ccc----------------HHHHHHHHhhhcCCCCEEEEecCCCCcHHHH
Confidence            221                12233333432 5677888899998765433

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=98.33  E-value=1e-05  Score=77.79  Aligned_cols=137  Identities=20%  Similarity=0.217  Sum_probs=89.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHH--------HHHHHh-hcCCCceEEEcCCccccCCCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEML--------DLQHAA-AFLPRTKILASVDYAVTAGSD  107 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~--------dl~~~~-~~~~~~~v~~t~~~~al~~aD  107 (350)
                      .++|+|||.|.||.++|..++.+|.  +|+=+|+|+.+++.+-.        ++.... ......++++|+|.+.++.||
T Consensus         9 ~~~I~ViGLGYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~d   86 (436)
T COG0677           9 SATIGVIGLGYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECD   86 (436)
T ss_pred             ceEEEEEccccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCC
Confidence            3799999999999999999999996  89999999987764311        111100 001245688899999999999


Q ss_pred             EEEEecCCCcCc-cccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEE-cCCcchHHHH---HHHH-hCCCCCcEeeecC
Q 018760          108 LCIVTAGARQIA-GESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIV-ANPVDILTYV---AWKL-SGLPSNRVIGSGT  180 (350)
Q Consensus       108 iVIi~~g~~~~~-g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~-tNP~~~~~~~---~~~~-sg~~~~rviG~g~  180 (350)
                      ++|+|+.+|.+. .+..+       ..+.+.++.|.++ .+..+||+= |-|.+.+-.+   +.+. +|+.-.+-|+++-
T Consensus        87 v~iI~VPTPl~~~~~pDl-------s~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~lay  159 (436)
T COG0677          87 VFIICVPTPLKKYREPDL-------SYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAY  159 (436)
T ss_pred             EEEEEecCCcCCCCCCCh-------HHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEee
Confidence            999999888654 23333       3444455555554 344544444 5677664333   2333 6655445556644


Q ss_pred             Cc
Q 018760          181 NL  182 (350)
Q Consensus       181 ~l  182 (350)
                      ..
T Consensus       160 sP  161 (436)
T COG0677         160 SP  161 (436)
T ss_pred             Cc
Confidence            43

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.33  E-value=2.9e-06  Score=80.98  Aligned_cols=105  Identities=18%  Similarity=0.295  Sum_probs=67.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh---cCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA---FLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~---~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      ||||+|||+|.||..++..|+..+.  +|.++|+++++++.......+...   ......+..+++. +.+++||+||++
T Consensus         1 mmkI~iiG~G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~   78 (325)
T PRK00094          1 MMKIAVLGAGSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVA   78 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEe
Confidence            4799999999999999999999885  899999998766543222101000   0001124445565 467899999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcch
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDI  159 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~  159 (350)
                      ...                ..+.++.+.+..+ .++.++|..+|.++.
T Consensus        79 v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         79 VPS----------------QALREVLKQLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             CCH----------------HHHHHHHHHHHhhcCCCCEEEEEeecccC
Confidence            631                1223333444443 467788888876553

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.28  E-value=3.6e-06  Score=80.68  Aligned_cols=104  Identities=16%  Similarity=0.218  Sum_probs=67.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh---hcCCCceEEEcCCc-ccc-CCCCEEEEe
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA---AFLPRTKILASVDY-AVT-AGSDLCIVT  112 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~---~~~~~~~v~~t~~~-~al-~~aDiVIi~  112 (350)
                      |||+|||||.+|++++..|.+.+.  +|.|++++++.++....+-.+..   .......+..+++. +++ .++|+||++
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~--~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiia   78 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKI--SVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILA   78 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC--eEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEE
Confidence            689999999999999999999984  89999998876553222100010   00012235555666 455 589999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhc-c-CCCeEEEEEcCCcch
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVK-Y-SPDCILLIVANPVDI  159 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~-~-~p~a~viv~tNP~~~  159 (350)
                      +.                ..-+.++++.+.. + .++..++..+|-.+.
T Consensus        79 vk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~  111 (326)
T PRK14620         79 VP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIEK  111 (326)
T ss_pred             eC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence            62                1223344444443 3 567778888888754

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.27  E-value=1.5e-05  Score=78.96  Aligned_cols=116  Identities=16%  Similarity=0.218  Sum_probs=73.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHH--------HHHHHhh-cCCCceEEEcCCccccCCCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEML--------DLQHAAA-FLPRTKILASVDYAVTAGSD  107 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~--------dl~~~~~-~~~~~~v~~t~~~~al~~aD  107 (350)
                      .+||+|||+|.||.++|..|++.|.  +|+.+|+++++++....        ++..... ......+..+++   +++||
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~G~--~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~---~~~aD   77 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASRQK--QVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTT---PEPAD   77 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhCCC--EEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecc---cccCC
Confidence            4799999999999999999999985  99999999988774211        0111000 000123444433   45899


Q ss_pred             EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEc-CCcchHHHH
Q 018760          108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVA-NPVDILTYV  163 (350)
Q Consensus       108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~t-NP~~~~~~~  163 (350)
                      +||++.+.|.++..+      .+...+.+.++.|.++ .++.+||+-| .|.+..-.+
T Consensus        78 vvii~vptp~~~~~~------~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~  129 (415)
T PRK11064         78 AFLIAVPTPFKGDHE------PDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQM  129 (415)
T ss_pred             EEEEEcCCCCCCCCC------cChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHH
Confidence            999999887643211      1234445555555554 4566666664 577665433

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.26  E-value=5.4e-06  Score=79.56  Aligned_cols=101  Identities=13%  Similarity=0.216  Sum_probs=65.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh---hcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA---AFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~---~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      +|||+|||+|.||.+++..|+..+.  +|+++|+++++++.....-.+..   ......++..+++. ++++++|+||++
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~--~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~   81 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGV--PVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVA   81 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEE
Confidence            5799999999999999999999885  89999999876654321111100   00011125555565 568999999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD  158 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~  158 (350)
                      ....                .++++.+.   ..|..++|.++|..+
T Consensus        82 v~~~----------------~~~~v~~~---l~~~~~vi~~~~Gi~  108 (328)
T PRK14618         82 VPSK----------------ALRETLAG---LPRALGYVSCAKGLA  108 (328)
T ss_pred             CchH----------------HHHHHHHh---cCcCCEEEEEeeccc
Confidence            6311                11333332   235667888888654

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.21  E-value=1.6e-05  Score=77.28  Aligned_cols=119  Identities=16%  Similarity=0.142  Sum_probs=77.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCC-----CCeEEEEeCCccc-hHHHHHHHHHHh---hcC----CCceEEEcCCc
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDF-----VEELALVDAKADK-LRGEMLDLQHAA---AFL----PRTKILASVDY  100 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~-----~~ev~L~D~~~~~-l~~~~~dl~~~~---~~~----~~~~v~~t~~~  100 (350)
                      ..+.+||+|||+|+.|+++|..|..++.     ..+|.|+.++++. -+..+.++++..   .+.    ...++.+++|.
T Consensus         8 ~~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl   87 (365)
T PTZ00345          8 RCGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDL   87 (365)
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCH
Confidence            3456899999999999999999998862     2489999998752 112344555322   122    23467777887


Q ss_pred             -cccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhc--c-CCCeEEEEEcCCc-------chHHHHHHHHh
Q 018760          101 -AVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVK--Y-SPDCILLIVANPV-------DILTYVAWKLS  168 (350)
Q Consensus       101 -~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~--~-~p~a~viv~tNP~-------~~~~~~~~~~s  168 (350)
                       +++++||+||+++.                ...++++++++..  + .+++++|.++--.       ..++.++.+..
T Consensus        88 ~eav~~aDiIvlAVP----------------sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l  150 (365)
T PTZ00345         88 KEAVEDADLLIFVIP----------------HQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEEL  150 (365)
T ss_pred             HHHHhcCCEEEEEcC----------------hHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHh
Confidence             57999999999962                2445666677765  3 3455666664221       23556665554

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.20  E-value=7e-06  Score=69.66  Aligned_cols=91  Identities=19%  Similarity=0.273  Sum_probs=63.4

Q ss_pred             CccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCc
Q 018760           13 GGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRT   92 (350)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~   92 (350)
                      ||.||..+|.    +...   ..+.++|.|+|+|.+|..++..|...+ ..+|.++|+++++++....++....     .
T Consensus         2 d~~g~~~a~~----~~~~---~~~~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~-----~   68 (155)
T cd01065           2 DGLGFVRALE----EAGI---ELKGKKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELG-----I   68 (155)
T ss_pred             CHHHHHHHHH----hhCC---CCCCCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhcc-----c
Confidence            6777777777    4443   344579999999999999999998886 4589999999887765443333210     1


Q ss_pred             eEEEcCCc-cccCCCCEEEEecCCCc
Q 018760           93 KILASVDY-AVTAGSDLCIVTAGARQ  117 (350)
Q Consensus        93 ~v~~t~~~-~al~~aDiVIi~~g~~~  117 (350)
                      .... .+. +.++++|+||++.+.+.
T Consensus        69 ~~~~-~~~~~~~~~~Dvvi~~~~~~~   93 (155)
T cd01065          69 AIAY-LDLEELLAEADLIINTTPVGM   93 (155)
T ss_pred             ceee-cchhhccccCCEEEeCcCCCC
Confidence            1222 233 45799999999976543

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=98.19  E-value=9e-06  Score=78.29  Aligned_cols=102  Identities=21%  Similarity=0.276  Sum_probs=65.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHH-hhc-C--------CCceEEEcCCccccCCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHA-AAF-L--------PRTKILASVDYAVTAGS  106 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~-~~~-~--------~~~~v~~t~~~~al~~a  106 (350)
                      +|||+|||+|.||..++..|.+.|.  +|.++|+++. .+.    +... ... .        ...++..+++.++++++
T Consensus         2 ~mkI~IiG~G~mG~~~A~~L~~~G~--~V~~~~r~~~-~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (341)
T PRK08229          2 MARICVLGAGSIGCYLGGRLAAAGA--DVTLIGRARI-GDE----LRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATA   74 (341)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCC--cEEEEecHHH-HHH----HHhcCceeecCCCcceecccceeEeccChhhccCC
Confidence            4799999999999999999999985  8999998642 221    2211 000 0        01134445566778999


Q ss_pred             CEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHH
Q 018760          107 DLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILT  161 (350)
Q Consensus       107 DiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~  161 (350)
                      |+||++...+.            ..++    ++.+..+ .++.+++..+|..+...
T Consensus        75 D~vil~vk~~~------------~~~~----~~~l~~~~~~~~iii~~~nG~~~~~  114 (341)
T PRK08229         75 DLVLVTVKSAA------------TADA----AAALAGHARPGAVVVSFQNGVRNAD  114 (341)
T ss_pred             CEEEEEecCcc------------hHHH----HHHHHhhCCCCCEEEEeCCCCCcHH
Confidence            99999974321            1122    3334443 56677778889876543

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=98.18  E-value=8.2e-06  Score=77.18  Aligned_cols=113  Identities=21%  Similarity=0.322  Sum_probs=70.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHH-hhc-CC--C--ceEEEcCCcc-ccCCCCEEE
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHA-AAF-LP--R--TKILASVDYA-VTAGSDLCI  110 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~-~~~-~~--~--~~v~~t~~~~-al~~aDiVI  110 (350)
                      |||+|||+|.+|..++..|.+.+.  +|.++++ +++++.    +.+. ... ..  .  .....+++.+ ..+++|+||
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~--~V~~~~r-~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi   73 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGR--DVTFLVR-PKRAKA----LRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVI   73 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC--ceEEEec-HHHHHH----HHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEE
Confidence            699999999999999999999884  8999999 666553    2221 100 00  1  0111233444 358999999


Q ss_pred             EecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHHHHHHHHhCCCCCcEe
Q 018760          111 VTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILTYVAWKLSGLPSNRVI  176 (350)
Q Consensus       111 i~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~~~~~~~sg~~~~rvi  176 (350)
                      ++.....                +.++.+.+..+ .++.++|.+.|.++....+. ++  ++.++++
T Consensus        74 lavk~~~----------------~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~-~~--~~~~~v~  121 (305)
T PRK12921         74 LAVKAYQ----------------LDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLE-PY--FGRERVL  121 (305)
T ss_pred             EEecccC----------------HHHHHHHHHhhcCCCCEEEEeeCCCChHHHHH-Hh--CCcccEE
Confidence            9964221                22233344443 46677888899887544332 33  4555666

>PRK07680 late competence protein ComER; Validated

Probab=98.09  E-value=2.2e-05  Score=73.35  Aligned_cols=96  Identities=20%  Similarity=0.353  Sum_probs=64.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCC--CeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFV--EELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~--~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      |||+|||+|.||..++..|...+.+  .+|.++|+++++++.    +.+..   +..++  +.+. +.++++|+||+++.
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~----~~~~~---~g~~~--~~~~~~~~~~aDiVilav~   71 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYH----IKERY---PGIHV--AKTIEEVISQSDLIFICVK   71 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHH----HHHHc---CCeEE--ECCHHHHHHhCCEEEEecC
Confidence            5899999999999999999988742  479999999876643    22211   11222  3344 55889999999962


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcc
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVD  158 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~  158 (350)
                          |            ..+.++.+.+..+ .++.++|.++|++.
T Consensus        72 ----p------------~~~~~vl~~l~~~l~~~~~iis~~ag~~  100 (273)
T PRK07680         72 ----P------------LDIYPLLQKLAPHLTDEHCLVSITSPIS  100 (273)
T ss_pred             ----H------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence                2            1123333444433 46678888898775

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=98.07  E-value=1.5e-05  Score=76.89  Aligned_cols=115  Identities=20%  Similarity=0.321  Sum_probs=72.6

Q ss_pred             eEEEEcCChhHHHHHHHHHhcC------CCCeEEEEeCCccc-hHHHHHHHHHHh--h-cCC----CceEEEcCCc-ccc
Q 018760           39 KISVIGTGNVGMAIAQTILTQD------FVEELALVDAKADK-LRGEMLDLQHAA--A-FLP----RTKILASVDY-AVT  103 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~------~~~ev~L~D~~~~~-l~~~~~dl~~~~--~-~~~----~~~v~~t~~~-~al  103 (350)
                      ||+|||+|+.|+++|..|+.++      +..+|.|+.++++. -+.....++...  . +.+    ..++.+++|. +++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            7999999999999999999876      22499999985421 011233343221  1 222    2356777887 578


Q ss_pred             CCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcC---C----cchHHHHHHHHhC
Q 018760          104 AGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVAN---P----VDILTYVAWKLSG  169 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN---P----~~~~~~~~~~~sg  169 (350)
                      ++||+||+++.                ...++++++++..+ .++..+|.++-   +    .-.+..++.+..+
T Consensus        81 ~~ADiIIlAVP----------------s~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~  138 (342)
T TIGR03376        81 KGADILVFVIP----------------HQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELG  138 (342)
T ss_pred             hcCCEEEEECC----------------hHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhC
Confidence            99999999952                24455556666654 45556666652   2    2345666666543

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.05  E-value=2.7e-05  Score=74.14  Aligned_cols=79  Identities=14%  Similarity=0.301  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ..|||+|||+|.+|++++..|...|.  +|.++|+++.                        .+. +++++||+||++..
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~--~V~~~~r~~~------------------------~~~~~~~~~advvi~~vp   56 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGH--RVRVWSRRSG------------------------LSLAAVLADADVIVSAVS   56 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCC--EEEEEeCCCC------------------------CCHHHHHhcCCEEEEECC
Confidence            45899999999999999999999985  9999999753                        123 45789999999963


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhc--cCCCeEEEEEcCC
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVK--YSPDCILLIVANP  156 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~--~~p~a~viv~tNP  156 (350)
                      .                ..++++++.+..  ..++.+++..|+.
T Consensus        57 ~----------------~~~~~v~~~l~~~~~~~~~ivi~~s~g   84 (308)
T PRK14619         57 M----------------KGVRPVAEQVQALNLPPETIIVTATKG   84 (308)
T ss_pred             h----------------HHHHHHHHHHHHhcCCCCcEEEEeCCc
Confidence            1                234444455553  3567788888873

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=98.04  E-value=3.7e-05  Score=73.37  Aligned_cols=116  Identities=16%  Similarity=0.282  Sum_probs=70.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhc---CCCc---eEEEcCCccccCCCCEE
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF---LPRT---KILASVDYAVTAGSDLC  109 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~---~~~~---~v~~t~~~~al~~aDiV  109 (350)
                      +.|||+|||+|.+|..++..|...+.  +|.++++++.  +...   ......   ....   .+..+++.++...+|+|
T Consensus         4 ~~m~I~IiG~GaiG~~lA~~L~~~g~--~V~~~~r~~~--~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   76 (313)
T PRK06249          4 ETPRIGIIGTGAIGGFYGAMLARAGF--DVHFLLRSDY--EAVR---ENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWV   76 (313)
T ss_pred             cCcEEEEECCCHHHHHHHHHHHHCCC--eEEEEEeCCH--HHHH---hCCeEEEeCCCCeeecCceEEcchhhcCCCCEE
Confidence            44799999999999999999999884  9999999752  2211   111000   0111   12233344567889999


Q ss_pred             EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhc-cCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEee
Q 018760          110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVK-YSPDCILLIVANPVDILTYVAWKLSGLPSNRVIG  177 (350)
Q Consensus       110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~-~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG  177 (350)
                      |++.....            ...    ..+.+.. ..|++.++...|-++..-.+. ++  +|+.+|++
T Consensus        77 ilavK~~~------------~~~----~~~~l~~~~~~~~~iv~lqNG~~~~e~l~-~~--~~~~~v~~  126 (313)
T PRK06249         77 LVGLKTTA------------NAL----LAPLIPQVAAPDAKVLLLQNGLGVEEQLR-EI--LPAEHLLG  126 (313)
T ss_pred             EEEecCCC------------hHh----HHHHHhhhcCCCCEEEEecCCCCcHHHHH-HH--CCCCcEEE
Confidence            99964221            112    2223333 257888888999887644443 33  46667663

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=98.00  E-value=2.7e-05  Score=73.03  Aligned_cols=66  Identities=18%  Similarity=0.239  Sum_probs=48.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAG  114 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g  114 (350)
                      |||+|||+|.||..++..|...+.  +|.++|++++.++.    +....    ... ..+++.+.+++||+||++..
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~----a~~~g----~~~-~~~~~~~~~~~aDlVilavp   66 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGH--TVYGVSRRESTCER----AIERG----LVD-EASTDLSLLKDCDLVILALP   66 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCC--EEEEEECCHHHHHH----HHHCC----Ccc-cccCCHhHhcCCCEEEEcCC
Confidence            589999999999999999999885  89999998876543    22111    011 12334567899999999963

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=98.00  E-value=5.1e-05  Score=72.17  Aligned_cols=120  Identities=15%  Similarity=0.145  Sum_probs=73.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHH--HHHHhhcCCCceEEE-cCCccccCCCCEEEEec
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLD--LQHAAAFLPRTKILA-SVDYAVTAGSDLCIVTA  113 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~d--l~~~~~~~~~~~v~~-t~~~~al~~aDiVIi~~  113 (350)
                      .|||+|+|+|.||..++..|...|.  +|.|+++..++++....+  +. .........+.. ..+.+.....|+||+|.
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~--~V~lv~r~~~~~~~i~~~~Gl~-i~~~g~~~~~~~~~~~~~~~~~~D~viv~v   78 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGL--PVRLILRDRQRLAAYQQAGGLT-LVEQGQASLYAIPAETADAAEPIHRLLLAC   78 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCC--CeEEEEechHHHHHHhhcCCeE-EeeCCcceeeccCCCCcccccccCEEEEEC
Confidence            5799999999999999999999885  899999987666532211  10 000000011111 11123356889999996


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                      -..            .+.    +..+.+..+ .+++.++.+.|-++....+.. +  ++.+++++-
T Consensus        79 K~~------------~~~----~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~-~--~~~~~v~~g  125 (305)
T PRK05708         79 KAY------------DAE----PAVASLAHRLAPGAELLLLQNGLGSQDAVAA-R--VPHARCIFA  125 (305)
T ss_pred             CHH------------hHH----HHHHHHHhhCCCCCEEEEEeCCCCCHHHHHH-h--CCCCcEEEE
Confidence            211            112    233344443 578889999999987655543 3  455677643

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=98.00  E-value=1.9e-05  Score=75.17  Aligned_cols=121  Identities=22%  Similarity=0.369  Sum_probs=74.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHH---HHHHhhcCCCceEEEcCCccccCCCCEEEEecC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLD---LQHAAAFLPRTKILASVDYAVTAGSDLCIVTAG  114 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~d---l~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g  114 (350)
                      |||+|+|||.||+.+++.|.+.+  .+|.++-+++. +++...+   +.+... ........+++.+....+|+||++.-
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g--~~V~~~~R~~~-~~~l~~~GL~i~~~~~-~~~~~~~~~~~~~~~~~~Dlviv~vK   76 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAG--HDVTLLVRSRR-LEALKKKGLRIEDEGG-NFTTPVVAATDAEALGPADLVIVTVK   76 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCC--CeEEEEecHHH-HHHHHhCCeEEecCCC-ccccccccccChhhcCCCCEEEEEec
Confidence            79999999999999999999999  47777777653 4432111   111100 00112222334567789999999963


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHHHHHHHHhCCCCCcEe-eecCCc
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILTYVAWKLSGLPSNRVI-GSGTNL  182 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~~~~~~~sg~~~~rvi-G~g~~l  182 (350)
                          ..+            ..+..+.+..+ .|+.+|+.+-|-.+..- .+.++  ++.++|+ |+ |..
T Consensus        77 ----a~q------------~~~al~~l~~~~~~~t~vl~lqNG~g~~e-~l~~~--~~~~~il~G~-~~~  126 (307)
T COG1893          77 ----AYQ------------LEEALPSLAPLLGPNTVVLFLQNGLGHEE-ELRKI--LPKETVLGGV-TTH  126 (307)
T ss_pred             ----ccc------------HHHHHHHhhhcCCCCcEEEEEeCCCcHHH-HHHHh--CCcceEEEEE-eee
Confidence                211            12334455554 57778999999998876 44444  4444444 45 443

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.98  E-value=3.8e-05  Score=71.35  Aligned_cols=95  Identities=19%  Similarity=0.335  Sum_probs=62.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCC-CCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDF-VEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~-~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      +|||+|||+|.||..++..|...+. ..+|.++|+++++++.    +.+..    ..++  +.+. +.+.++|+||++..
T Consensus         2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~----~~~~~----g~~~--~~~~~~~~~~advVil~v~   71 (267)
T PRK11880          2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAA----LAEEY----GVRA--ATDNQEAAQEADVVVLAVK   71 (267)
T ss_pred             CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHH----HHHhc----CCee--cCChHHHHhcCCEEEEEcC
Confidence            5799999999999999999988773 2479999999876543    32211    1122  3344 45789999999962


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD  158 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~  158 (350)
                          +            ..++++.+.+..+. +..|+.++|...
T Consensus        72 ----~------------~~~~~v~~~l~~~~-~~~vvs~~~gi~   98 (267)
T PRK11880         72 ----P------------QVMEEVLSELKGQL-DKLVVSIAAGVT   98 (267)
T ss_pred             ----H------------HHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence                1            22334444444333 456777777664

>PRK08507 prephenate dehydrogenase; Validated

Probab=97.97  E-value=7.1e-05  Score=70.04  Aligned_cols=66  Identities=15%  Similarity=0.224  Sum_probs=47.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEec
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTA  113 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~  113 (350)
                      |||+|||+|.||..++..|...+...+|+.+|+++++++.    +....    ....  ..+.+++.+||+||++.
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~----~~~~g----~~~~--~~~~~~~~~aD~Vilav   66 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKK----ALELG----LVDE--IVSFEELKKCDVIFLAI   66 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHH----HHHCC----CCcc--cCCHHHHhcCCEEEEeC
Confidence            5899999999999999999998864579999998876542    22111    0111  22444455699999996

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.92  E-value=7.2e-05  Score=70.00  Aligned_cols=67  Identities=19%  Similarity=0.425  Sum_probs=49.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCC--CCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDF--VEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~--~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      .+||++||+|+||.+++..|++.+.  ..+|+.+|+++++++.    +.+..    ..++  +++. +.+++||+||++.
T Consensus         2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~----l~~~~----g~~~--~~~~~e~~~~aDiIiLav   71 (272)
T PRK12491          2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKN----ASDKY----GITI--TTNNNEVANSADILILSI   71 (272)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHH----HHHhc----CcEE--eCCcHHHHhhCCEEEEEe
Confidence            3589999999999999999998884  3579999998876542    32211    1222  3344 5678999999996

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.90  E-value=0.00014  Score=69.14  Aligned_cols=69  Identities=19%  Similarity=0.341  Sum_probs=49.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      .+||+|||+|.||..++..|...+...+|.++|+++++++.    +.. ..  ....+  +.+. +.+++||+||+++.
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~----a~~-~g--~~~~~--~~~~~~~~~~aDvViiavp   75 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRAR----ARE-LG--LGDRV--TTSAAEAVKGADLVILCVP   75 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHH----HHh-CC--CCcee--cCCHHHHhcCCCEEEECCC
Confidence            36999999999999999999988865589999999876542    111 11  01111  2344 56899999999964

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.90  E-value=4.7e-05  Score=63.58  Aligned_cols=77  Identities=14%  Similarity=0.247  Sum_probs=57.3

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      .+..++.|||||.+|+.++..|...+. .+|++++++.++++..+..+..     ....+....+. +.+.++|+||.+.
T Consensus        10 l~~~~vlviGaGg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~~-----~~~~~~~~~~~~~~~~~~DivI~aT   83 (135)
T PF01488_consen   10 LKGKRVLVIGAGGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFGG-----VNIEAIPLEDLEEALQEADIVINAT   83 (135)
T ss_dssp             GTTSEEEEESSSHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHTG-----CSEEEEEGGGHCHHHHTESEEEE-S
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcCc-----cccceeeHHHHHHHHhhCCeEEEec
Confidence            356799999999999999999999986 5899999999888765555511     12344444454 4688999999997


Q ss_pred             CCCc
Q 018760          114 GARQ  117 (350)
Q Consensus       114 g~~~  117 (350)
                      +.+.
T Consensus        84 ~~~~   87 (135)
T PF01488_consen   84 PSGM   87 (135)
T ss_dssp             STTS
T ss_pred             CCCC
Confidence            6543

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.89  E-value=7.3e-05  Score=69.44  Aligned_cols=65  Identities=20%  Similarity=0.336  Sum_probs=48.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCC--CCeEEEE-eCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDF--VEELALV-DAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~--~~ev~L~-D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      |||++||+|.||.+++..|+..+.  ..+|+++ |+++++++.    +.. .    ..++  +++. +.+++||+||++.
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~----~~~-~----g~~~--~~~~~e~~~~aDvVil~v   69 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDV----FQS-L----GVKT--AASNTEVVKSSDVIILAV   69 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHH----HHH-c----CCEE--eCChHHHHhcCCEEEEEE
Confidence            789999999999999999998874  3478888 888776542    222 1    1222  3344 5678999999997

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.88  E-value=0.00028  Score=68.76  Aligned_cols=75  Identities=24%  Similarity=0.232  Sum_probs=52.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC--c-cccCCCCEEEEec
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD--Y-AVTAGSDLCIVTA  113 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~--~-~al~~aDiVIi~~  113 (350)
                      ++||.|||||.||+.+|..|++++- .+|++.|++.++++...........   ...+-+...  . +.+++.|+||.++
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~---~~~vD~~d~~al~~li~~~d~VIn~~   76 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVE---ALQVDAADVDALVALIKDFDLVINAA   76 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccce---eEEecccChHHHHHHHhcCCEEEEeC
Confidence            5799999999999999999999986 6999999998877643222111110   111222211  2 5689999999997


Q ss_pred             CC
Q 018760          114 GA  115 (350)
Q Consensus       114 g~  115 (350)
                      +.
T Consensus        77 p~   78 (389)
T COG1748          77 PP   78 (389)
T ss_pred             Cc
Confidence            53

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.87  E-value=0.00012  Score=67.05  Aligned_cols=68  Identities=22%  Similarity=0.387  Sum_probs=47.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCC--CCeEEEEeC-CccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEE
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDF--VEELALVDA-KADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIV  111 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~--~~ev~L~D~-~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi  111 (350)
                      +.+||+|||+|.+|.+++..++..+.  ..+++++++ ++++++    ++.+..    ..+  .+++. +.++++|+||+
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~----~~~--~~~~~~~~~~~~DiVii   72 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLD----QLQARY----NVS--TTTDWKQHVTSVDTIVL   72 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHH----HHHHHc----CcE--EeCChHHHHhcCCEEEE
Confidence            35799999999999999999988763  334777876 455544    233221    122  23455 56889999999


Q ss_pred             ec
Q 018760          112 TA  113 (350)
Q Consensus       112 ~~  113 (350)
                      +.
T Consensus        73 av   74 (245)
T PRK07634         73 AM   74 (245)
T ss_pred             ec
Confidence            95

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.84  E-value=9.3e-05  Score=68.64  Aligned_cols=95  Identities=21%  Similarity=0.321  Sum_probs=67.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCC--CCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDF--VEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~--~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      ++||++||+|+||.+++..|...+.  ..+|+..|+++++++    ++.....    ..+  +++. +....+|+||+++
T Consensus         1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~----~l~~~~g----~~~--~~~~~~~~~~advv~Lav   70 (266)
T COG0345           1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA----ALAAEYG----VVT--TTDNQEAVEEADVVFLAV   70 (266)
T ss_pred             CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH----HHHHHcC----Ccc--cCcHHHHHhhCCEEEEEe
Confidence            4799999999999999999999983  359999999988765    3443321    122  4454 6788999999997


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV  157 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~  157 (350)
                          ||            ..+.++.+.++...++.++|.+.=.+
T Consensus        71 ----KP------------q~~~~vl~~l~~~~~~~lvISiaAGv   98 (266)
T COG0345          71 ----KP------------QDLEEVLSKLKPLTKDKLVISIAAGV   98 (266)
T ss_pred             ----Ch------------HhHHHHHHHhhcccCCCEEEEEeCCC
Confidence                55            34556666666655666666554333

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.84  E-value=0.00015  Score=69.29  Aligned_cols=134  Identities=13%  Similarity=0.124  Sum_probs=81.8

Q ss_pred             hHHHHHHHHHhcCCCCeEEEEeCCccchH-------HHHHHHHH----Hhhc--C-------CCceEEEcCC--c-cccC
Q 018760           48 VGMAIAQTILTQDFVEELALVDAKADKLR-------GEMLDLQH----AAAF--L-------PRTKILASVD--Y-AVTA  104 (350)
Q Consensus        48 vG~~~a~~l~~~~~~~ev~L~D~~~~~l~-------~~~~dl~~----~~~~--~-------~~~~v~~t~~--~-~al~  104 (350)
                      ||..+|..++..|+  +|+|+|++++.++       .....+..    ....  .       ...++..+++  . ++++
T Consensus         1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~   78 (314)
T PRK08269          1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALA   78 (314)
T ss_pred             CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhc
Confidence            68899999999996  9999999986422       11112211    1100  0       1234555543  3 6789


Q ss_pred             CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee------
Q 018760          105 GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS------  178 (350)
Q Consensus       105 ~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~------  178 (350)
                      +||+||.++              .++..+.+.+..++.+.++...+ ++||.+.+....+..... .|.|++|+      
T Consensus        79 ~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~i-laSntS~~~~~~la~~~~-~p~r~~g~Hf~~Pp  142 (314)
T PRK08269         79 DADLVFEAV--------------PEVLDAKREALRWLGRHVDADAI-IASTTSTFLVTDLQRHVA-HPERFLNAHWLNPA  142 (314)
T ss_pred             cCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcE-EEEccccCCHHHHHhhcC-CcccEEEEecCCcc
Confidence            999999995              24678888888889888644433 389988875544444333 23555543      


Q ss_pred             ------------cCCccHHHHHHHHHHHcCCCC
Q 018760          179 ------------GTNLDSSRFRFLLADHLDVNA  199 (350)
Q Consensus       179 ------------g~~ld~~r~~~~la~~l~v~p  199 (350)
                                  +|.-+.......+.+.+|..|
T Consensus       143 ~~~~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~  175 (314)
T PRK08269        143 YLMPLVEVSPSDATDPAVVDRLAALLERIGKVP  175 (314)
T ss_pred             ccCceEEEeCCCCCCHHHHHHHHHHHHHcCCcE
Confidence                        333333333455566677654

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.78  E-value=0.0001  Score=69.83  Aligned_cols=93  Identities=15%  Similarity=0.245  Sum_probs=61.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc-CCc-cccCCCCEEEEecCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS-VDY-AVTAGSDLCIVTAGA  115 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t-~~~-~al~~aDiVIi~~g~  115 (350)
                      |||+|||+|.||.+++..|+..+.  +|.++|+++++++.    +....     .....+ .+. +.++++|+|+++...
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~--~V~~~dr~~~~~~~----l~~~g-----~~~~~s~~~~~~~~~~~dvIi~~vp~   69 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGH--DCVGYDHDQDAVKA----MKEDR-----TTGVANLRELSQRLSAPRVVWVMVPH   69 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCC--EEEEEECCHHHHHH----HHHcC-----CcccCCHHHHHhhcCCCCEEEEEcCc
Confidence            589999999999999999999985  89999999987653    32211     111111 122 346789999999531


Q ss_pred             CcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCc
Q 018760          116 RQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPV  157 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~  157 (350)
                                      ..++++++.+... .++.++|..||..
T Consensus        70 ----------------~~~~~v~~~l~~~l~~g~ivid~st~~   96 (298)
T TIGR00872        70 ----------------GIVDAVLEELAPTLEKGDIVIDGGNSY   96 (298)
T ss_pred             ----------------hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                            1233333344443 4667888887754

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.77  E-value=0.00018  Score=67.38  Aligned_cols=92  Identities=21%  Similarity=0.324  Sum_probs=62.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCCc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQ  117 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~~  117 (350)
                      +||++||.|.||.++|..|+..|+  +++.+|+++++...   .+...-     .... .+..++.++||+||.+..   
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~--~v~v~~r~~~ka~~---~~~~~G-----a~~a-~s~~eaa~~aDvVitmv~---   66 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGH--EVTVYNRTPEKAAE---LLAAAG-----ATVA-ASPAEAAAEADVVITMLP---   66 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCC--EEEEEeCChhhhhH---HHHHcC-----Cccc-CCHHHHHHhCCEEEEecC---
Confidence            589999999999999999999996  99999999987421   232211     1222 222478999999999964   


Q ss_pred             CccccHHHHHHhhHHHHHHHHh---hhh-ccCCCeEEEEEcC
Q 018760          118 IAGESRLNLLQRNLSLFKAIIP---PLV-KYSPDCILLIVAN  155 (350)
Q Consensus       118 ~~g~~r~~~~~~n~~i~~~i~~---~i~-~~~p~a~viv~tN  155 (350)
                                  |-+.++++..   -+. ...|..++|..|+
T Consensus        67 ------------~~~~V~~V~~g~~g~~~~~~~G~i~IDmST   96 (286)
T COG2084          67 ------------DDAAVRAVLFGENGLLEGLKPGAIVIDMST   96 (286)
T ss_pred             ------------CHHHHHHHHhCccchhhcCCCCCEEEECCC
Confidence                        3344444442   222 2356676666653

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.76  E-value=0.00022  Score=66.87  Aligned_cols=67  Identities=16%  Similarity=0.359  Sum_probs=47.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCC--CCeEEEEeCCcc-chHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDF--VEELALVDAKAD-KLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~--~~ev~L~D~~~~-~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      .|||+|||+|+||.+++..|+..+.  ..+|+++|++.+ +++    .+....    ..+  .+.+. +.+++||+||++
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~----~l~~~~----g~~--~~~~~~e~~~~aDvVila   72 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQ----ELHQKY----GVK--GTHNKKELLTDANILFLA   72 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHH----HHHHhc----Cce--EeCCHHHHHhcCCEEEEE
Confidence            4799999999999999999998872  258899998653 333    233221    122  23344 567899999999


Q ss_pred             c
Q 018760          113 A  113 (350)
Q Consensus       113 ~  113 (350)
                      .
T Consensus        73 v   73 (279)
T PRK07679         73 M   73 (279)
T ss_pred             e
Confidence            6

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=97.75  E-value=0.00013  Score=73.35  Aligned_cols=98  Identities=15%  Similarity=0.190  Sum_probs=64.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-cc---CCCCEEEEec
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VT---AGSDLCIVTA  113 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al---~~aDiVIi~~  113 (350)
                      .+|+|||+|.||.++|..|+.+|.  +|.++|+++++.+.......+.     ...+..+.+.+ .+   +++|+|++++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~--~V~v~dr~~~~~~~l~~~~~~~-----g~~i~~~~s~~e~v~~l~~~d~Iil~v   74 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGF--KISVYNRTYEKTEEFVKKAKEG-----NTRVKGYHTLEELVNSLKKPRKVILLI   74 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHhhhhc-----CCcceecCCHHHHHhcCCCCCEEEEEe
Confidence            589999999999999999999996  8999999998776432211110     11233445553 33   3689999885


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCc
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPV  157 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~  157 (350)
                      .    +           ...++++.+.+..+ .|+.++|..+|-.
T Consensus        75 ~----~-----------~~~v~~vi~~l~~~L~~g~iIID~gn~~  104 (470)
T PTZ00142         75 K----A-----------GEAVDETIDNLLPLLEKGDIIIDGGNEW  104 (470)
T ss_pred             C----C-----------hHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            2    1           12333344444443 5788888888743

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.72  E-value=0.00037  Score=69.58  Aligned_cols=65  Identities=23%  Similarity=0.367  Sum_probs=48.0

Q ss_pred             CeEEEEc-CChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           38 TKISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        38 ~KI~IIG-AG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      |||+||| +|.||..++..|...+.  +|.++|++++++..    +....    .  +..+++. +++.+||+||+++.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~~~----~a~~~----g--v~~~~~~~e~~~~aDvVIlavp   67 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKGKE----VAKEL----G--VEYANDNIDAAKDADIVIISVP   67 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHHHH----HHHHc----C--CeeccCHHHHhccCCEEEEecC
Confidence            6899998 59999999999999885  89999998765432    22111    1  2234454 56899999999963

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.71  E-value=0.00016  Score=68.10  Aligned_cols=63  Identities=17%  Similarity=0.286  Sum_probs=48.0

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ||+|||+|.||..++..|+..+.  +|+++|+++++++.    +....     . .. .++. +++++||+||++..
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~--~V~~~dr~~~~~~~----~~~~g-----~-~~-~~~~~~~~~~aDivi~~vp   64 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGY--QLHVTTIGPEVADE----LLAAG-----A-VT-AETARQVTEQADVIFTMVP   64 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCC--eEEEEcCCHHHHHH----HHHCC-----C-cc-cCCHHHHHhcCCEEEEecC
Confidence            69999999999999999999885  89999999876653    22211     1 11 2244 67899999999963

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.70  E-value=9.9e-05  Score=62.36  Aligned_cols=112  Identities=22%  Similarity=0.353  Sum_probs=69.8

Q ss_pred             EEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh-hc-CCC--ceEE--E-cCCc-cccCCCCEEEE
Q 018760           40 ISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA-AF-LPR--TKIL--A-SVDY-AVTAGSDLCIV  111 (350)
Q Consensus        40 I~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~-~~-~~~--~~v~--~-t~~~-~al~~aDiVIi  111 (350)
                      |+|+|+|.+|..+|..|.+.+.  +|.|+++.+ +++.    +.... .. ...  ..+.  . ..+. +....+|+||+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv   73 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGH--DVTLVSRSP-RLEA----IKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIV   73 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTC--EEEEEESHH-HHHH----HHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE
T ss_pred             CEEECcCHHHHHHHHHHHHCCC--ceEEEEccc-cHHh----hhheeEEEEecccceecccccccCcchhccCCCcEEEE
Confidence            7899999999999999999885  999999987 5553    33211 11 011  1111  1 1122 35789999999


Q ss_pred             ecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHHHHHHHHhCCCCCcEee
Q 018760          112 TAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILTYVAWKLSGLPSNRVIG  177 (350)
Q Consensus       112 ~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG  177 (350)
                      |....    +        .    .+..+.++.+ .|+..++.+.|-++..-.+.. +  +++.+|++
T Consensus        74 ~vKa~----~--------~----~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~-~--~~~~~v~~  121 (151)
T PF02558_consen   74 AVKAY----Q--------L----EQALQSLKPYLDPNTTIVSLQNGMGNEEVLAE-Y--FPRPRVLG  121 (151)
T ss_dssp             -SSGG----G--------H----HHHHHHHCTGEETTEEEEEESSSSSHHHHHHC-H--STGSGEEE
T ss_pred             Eeccc----c--------h----HHHHHHHhhccCCCcEEEEEeCCCCcHHHHHH-H--cCCCcEEE
Confidence            96321    1        1    2344445555 577789999999887744443 2  34456653

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.67  E-value=0.00022  Score=66.84  Aligned_cols=96  Identities=14%  Similarity=0.181  Sum_probs=65.0

Q ss_pred             CCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCC
Q 018760           12 PGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR   91 (350)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~   91 (350)
                      -||.||...|.    ....+ ...+..+++|+|||..+.++++.|++.+. .+|++++++.+|++..+..+.+...   .
T Consensus       106 TD~~G~~~~L~----~~~~~-~~~~~~~vlilGAGGAarAv~~aL~~~g~-~~i~V~NRt~~ra~~La~~~~~~~~---~  176 (283)
T COG0169         106 TDGIGFLRALK----EFGLP-VDVTGKRVLILGAGGAARAVAFALAEAGA-KRITVVNRTRERAEELADLFGELGA---A  176 (283)
T ss_pred             CCHHHHHHHHH----hcCCC-cccCCCEEEEECCcHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhhhccc---c
Confidence            47888777776    43321 12245689999999999999999999996 6899999999988865555543321   1


Q ss_pred             ceEEEcCCccccCCCCEEEEecCCC
Q 018760           92 TKILASVDYAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        92 ~~v~~t~~~~al~~aDiVIi~~g~~  116 (350)
                      .......+.+...++|+||.+....
T Consensus       177 ~~~~~~~~~~~~~~~dliINaTp~G  201 (283)
T COG0169         177 VEAAALADLEGLEEADLLINATPVG  201 (283)
T ss_pred             cccccccccccccccCEEEECCCCC
Confidence            1122122333344799999986443

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.67  E-value=0.00048  Score=64.57  Aligned_cols=98  Identities=18%  Similarity=0.289  Sum_probs=62.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCC--CeEEEEeCCcc-chHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFV--EELALVDAKAD-KLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~--~ev~L~D~~~~-~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      ++||+|||+|.||.+++..|...+..  .+|++++++.+ +++    .+....   .  .+..+++. +.++++|+||++
T Consensus         1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~----~l~~~~---~--~~~~~~~~~e~~~~aDvVila   71 (277)
T PRK06928          1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFN----QLYDKY---P--TVELADNEAEIFTKCDHSFIC   71 (277)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHH----HHHHHc---C--CeEEeCCHHHHHhhCCEEEEe
Confidence            36899999999999999999988732  58999998653 222    222211   1  12223454 568899999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcch
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDI  159 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~  159 (350)
                      +.    |            ..++++++.+..+ .++..+|.+.|-+++
T Consensus        72 vp----p------------~~~~~vl~~l~~~l~~~~~ivS~~aGi~~  103 (277)
T PRK06928         72 VP----P------------LAVLPLLKDCAPVLTPDRHVVSIAAGVSL  103 (277)
T ss_pred             cC----H------------HHHHHHHHHHHhhcCCCCEEEEECCCCCH
Confidence            63    1            2234444555443 345567777776655

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.66  E-value=0.00033  Score=66.30  Aligned_cols=64  Identities=22%  Similarity=0.396  Sum_probs=49.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      +||+|||+|.||.+++..|+..+.  +|+++|+++++++.    +....       +..+.+. +++++||+||++..
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~--~V~v~d~~~~~~~~----~~~~g-------~~~~~s~~~~~~~aDvVi~~vp   66 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGH--QLQVFDVNPQAVDA----LVDKG-------ATPAASPAQAAAGAEFVITMLP   66 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCC--eEEEEcCCHHHHHH----HHHcC-------CcccCCHHHHHhcCCEEEEecC
Confidence            489999999999999999999985  89999999887653    32211       1123344 57899999999963

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.66  E-value=0.00012  Score=68.85  Aligned_cols=94  Identities=16%  Similarity=0.242  Sum_probs=63.2

Q ss_pred             CCCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCC
Q 018760           11 GPGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP   90 (350)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~   90 (350)
                      --||.||.+++.    ....   ..+..++.|+|||.+++++++.|+..+. .+|.++|++.++++..+.++....   .
T Consensus       108 NTD~~Gf~~~L~----~~~~---~~~~k~vlilGaGGaarAi~~aL~~~g~-~~i~i~nR~~~ka~~La~~~~~~~---~  176 (283)
T PRK14027        108 NTDVSGFGRGME----EGLP---NAKLDSVVQVGAGGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVINNAV---G  176 (283)
T ss_pred             cCCHHHHHHHHH----hcCc---CcCCCeEEEECCcHHHHHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHhhcc---C
Confidence            358888888885    2221   2234689999999999999999998886 689999999998887665554221   1


Q ss_pred             CceEEEcC--Cc-cccCCCCEEEEecCC
Q 018760           91 RTKILASV--DY-AVTAGSDLCIVTAGA  115 (350)
Q Consensus        91 ~~~v~~t~--~~-~al~~aDiVIi~~g~  115 (350)
                      ...+....  +. +.+.++|+||.+...
T Consensus       177 ~~~~~~~~~~~~~~~~~~~divINaTp~  204 (283)
T PRK14027        177 REAVVGVDARGIEDVIAAADGVVNATPM  204 (283)
T ss_pred             cceEEecCHhHHHHHHhhcCEEEEcCCC
Confidence            11111111  11 245689999998543

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.65  E-value=0.00068  Score=61.68  Aligned_cols=130  Identities=22%  Similarity=0.350  Sum_probs=76.9

Q ss_pred             hhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCC--eEEEEeCC----ccchH---HHHHHHHHHhhcC
Q 018760           19 QTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVE--ELALVDAK----ADKLR---GEMLDLQHAAAFL   89 (350)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~--ev~L~D~~----~~~l~---~~~~dl~~~~~~~   89 (350)
                      .||...++....   ..+..||.|+|||.+|..++..|...|+ .  +|+++|++    .++.+   .....+.+...  
T Consensus        10 AG~~~al~~~g~---~l~~~rvlvlGAGgAg~aiA~~L~~~G~-~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~--   83 (226)
T cd05311          10 AGLLNALKLVGK---KIEEVKIVINGAGAAGIAIARLLLAAGA-KPENIVVVDSKGVIYEGREDDLNPDKNEIAKETN--   83 (226)
T ss_pred             HHHHHHHHHhCC---CccCCEEEEECchHHHHHHHHHHHHcCc-CcceEEEEeCCCccccccchhhhHHHHHHHHHhc--
Confidence            456655555433   3345699999999999999999998886 4  89999998    45432   11222322210  


Q ss_pred             CCceEEEcCCc-cccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch-HHHHHHHH
Q 018760           90 PRTKILASVDY-AVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI-LTYVAWKL  167 (350)
Q Consensus        90 ~~~~v~~t~~~-~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~-~~~~~~~~  167 (350)
                       ....  ..+. ++++++|+||.+.+    +|.-       +    .+..+.|   +++.+++.++||... +.+.+.+.
T Consensus        84 -~~~~--~~~l~~~l~~~dvlIgaT~----~G~~-------~----~~~l~~m---~~~~ivf~lsnP~~e~~~~~A~~~  142 (226)
T cd05311          84 -PEKT--GGTLKEALKGADVFIGVSR----PGVV-------K----KEMIKKM---AKDPIVFALANPVPEIWPEEAKEA  142 (226)
T ss_pred             -cCcc--cCCHHHHHhcCCEEEeCCC----CCCC-------C----HHHHHhh---CCCCEEEEeCCCCCcCCHHHHHHc
Confidence             0111  1244 67889999999865    2321       1    1222222   366777788899753 22333332


Q ss_pred             hCCCCCcEeeec
Q 018760          168 SGLPSNRVIGSG  179 (350)
Q Consensus       168 sg~~~~rviG~g  179 (350)
                       |   .+++..|
T Consensus       143 -g---a~i~a~G  150 (226)
T cd05311         143 -G---ADIVATG  150 (226)
T ss_pred             -C---CcEEEeC
Confidence             2   2466665

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.63  E-value=0.00031  Score=65.21  Aligned_cols=61  Identities=15%  Similarity=0.313  Sum_probs=45.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCC--CeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEec
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFV--EELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTA  113 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~--~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~  113 (350)
                      .|||+|||+|.||.+++..|.+.+..  .+++.+|++++++.               . ....++.+.++++|+||++.
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~~---------------~-~~~~~~~~~~~~~D~Vilav   65 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNTP---------------F-VYLQSNEELAKTCDIIVLAV   65 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcCC---------------e-EEeCChHHHHHhCCEEEEEe
Confidence            47999999999999999999988743  35999998765420               1 12222235678999999995

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=97.63  E-value=0.00039  Score=65.65  Aligned_cols=64  Identities=20%  Similarity=0.333  Sum_probs=48.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      |||+|||+|.||..++..|+..+.  +|.++|+++++++.    +...     .  +..+.+. +.+++||+||++..
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~--~v~~~d~~~~~~~~----~~~~-----g--~~~~~~~~e~~~~~d~vi~~vp   67 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGY--SLVVYDRNPEAVAE----VIAA-----G--AETASTAKAVAEQCDVIITMLP   67 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCC--eEEEEcCCHHHHHH----HHHC-----C--CeecCCHHHHHhcCCEEEEeCC
Confidence            689999999999999999999885  89999999876542    2211     1  1223355 56789999999963

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.62  E-value=0.0001  Score=60.88  Aligned_cols=104  Identities=20%  Similarity=0.272  Sum_probs=55.7

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEE-eCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALV-DAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~-D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~  112 (350)
                      ....+||+|||+|.||.+++..|...+.  +|.-+ .++.+..+    .+....   +...+.  +..+.+.+||++|++
T Consensus         7 ~~~~l~I~iIGaGrVG~~La~aL~~ag~--~v~~v~srs~~sa~----~a~~~~---~~~~~~--~~~~~~~~aDlv~ia   75 (127)
T PF10727_consen    7 QAARLKIGIIGAGRVGTALARALARAGH--EVVGVYSRSPASAE----RAAAFI---GAGAIL--DLEEILRDADLVFIA   75 (127)
T ss_dssp             -----EEEEECTSCCCCHHHHHHHHTTS--EEEEESSCHH-HHH----HHHC-----TT-------TTGGGCC-SEEEE-
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHHCCC--eEEEEEeCCccccc----cccccc---cccccc--ccccccccCCEEEEE
Confidence            3456899999999999999999999985  55544 44443222    233221   122222  223668999999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhcc---CCCeEEEEEc--CCcchHHHHH
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKY---SPDCILLIVA--NPVDILTYVA  164 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~---~p~a~viv~t--NP~~~~~~~~  164 (350)
                      +.     +           ..+.+++++|.++   .|+.+|+=.|  -+++++..+-
T Consensus        76 vp-----D-----------daI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~~  116 (127)
T PF10727_consen   76 VP-----D-----------DAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPAR  116 (127)
T ss_dssp             S------C-----------CHHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHHH
T ss_pred             ec-----h-----------HHHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhHH
Confidence            63     1           1345566666665   3565555554  5677776654

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=97.61  E-value=7.1e-05  Score=69.87  Aligned_cols=82  Identities=21%  Similarity=0.231  Sum_probs=57.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHH--------HHHHhhcCCCceEEEcCCc-cccCCCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLD--------LQHAAAFLPRTKILASVDY-AVTAGSD  107 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~d--------l~~~~~~~~~~~v~~t~~~-~al~~aD  107 (350)
                      ++|||-||||.||.+....++.+-.--+|+++|++..|..+.-.|        |.+....+...++..++|. .+++.||
T Consensus         1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~ead   80 (481)
T KOG2666|consen    1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEAD   80 (481)
T ss_pred             CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcc
Confidence            479999999999988766655543323899999998877543211        1111111234567778887 5899999


Q ss_pred             EEEEecCCCcC
Q 018760          108 LCIVTAGARQI  118 (350)
Q Consensus       108 iVIi~~g~~~~  118 (350)
                      +|++.+..|.+
T Consensus        81 lvfisvntptk   91 (481)
T KOG2666|consen   81 LVFISVNTPTK   91 (481)
T ss_pred             eEEEEecCCcc
Confidence            99999888765

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.60  E-value=0.00023  Score=66.98  Aligned_cols=95  Identities=13%  Similarity=0.092  Sum_probs=63.5

Q ss_pred             CCCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCC
Q 018760           11 GPGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP   90 (350)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~   90 (350)
                      --||.||..+|.    +... ....+..++.|||||.+++++++.|+..|. .+|.+++++.++++..+..+....    
T Consensus       104 NTD~~G~~~~l~----~~~~-~~~~~~k~vlvlGaGGaarai~~aL~~~G~-~~i~I~nRt~~ka~~La~~~~~~~----  173 (282)
T TIGR01809       104 NTDWDGIAGALA----NIGK-FEPLAGFRGLVIGAGGTSRAAVYALASLGV-TDITVINRNPDKLSRLVDLGVQVG----  173 (282)
T ss_pred             cCCHHHHHHHHH----hhCC-ccccCCceEEEEcCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhhhcC----
Confidence            358888888886    2220 001234589999999999999999999885 689999999988876655543211    


Q ss_pred             CceEEEc-CCc-cccCCCCEEEEecCC
Q 018760           91 RTKILAS-VDY-AVTAGSDLCIVTAGA  115 (350)
Q Consensus        91 ~~~v~~t-~~~-~al~~aDiVIi~~g~  115 (350)
                      ....... .+. +.+.++|+||.+...
T Consensus       174 ~~~~~~~~~~~~~~~~~~DiVInaTp~  200 (282)
T TIGR01809       174 VITRLEGDSGGLAIEKAAEVLVSTVPA  200 (282)
T ss_pred             cceeccchhhhhhcccCCCEEEECCCC
Confidence            1111101 122 446889999998644

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=97.59  E-value=0.0011  Score=62.29  Aligned_cols=94  Identities=18%  Similarity=0.296  Sum_probs=56.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC--ccccCCCCEEEEecC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD--YAVTAGSDLCIVTAG  114 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~--~~al~~aDiVIi~~g  114 (350)
                      .++|+|+|.|.||..++..|...|.  .+.+++.+.....     +............  +.+  .++.++||+||+++.
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~--~v~i~g~d~~~~~-----~~~a~~lgv~d~~--~~~~~~~~~~~aD~VivavP   73 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGL--VVRIIGRDRSAAT-----LKAALELGVIDEL--TVAGLAEAAAEADLVIVAVP   73 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCC--eEEEEeecCcHHH-----HHHHhhcCccccc--ccchhhhhcccCCEEEEecc
Confidence            5799999999999999999999997  5556666554322     1111101001111  122  467889999999974


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ..            ...++++++++   ...|++++.-++
T Consensus        74 i~------------~~~~~l~~l~~---~l~~g~iv~Dv~   98 (279)
T COG0287          74 IE------------ATEEVLKELAP---HLKKGAIVTDVG   98 (279)
T ss_pred             HH------------HHHHHHHHhcc---cCCCCCEEEecc
Confidence            22            23444444444   234566555444

>PRK06545 prephenate dehydrogenase; Validated

Probab=97.59  E-value=0.00075  Score=65.69  Aligned_cols=68  Identities=16%  Similarity=0.245  Sum_probs=47.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      +||+|||+|.||.+++..|...++  ++.++|.+++....     ...........  .+++. +++++||+||+++.
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~--~v~i~~~~~~~~~~-----~~a~~~~~~~~--~~~~~~~~~~~aDlVilavP   69 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGP--DVFIIGYDPSAAQL-----ARALGFGVIDE--LAADLQRAAAEADLIVLAVP   69 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCC--CeEEEEeCCCHHHH-----HHHhcCCCCcc--cccCHHHHhcCCCEEEEeCC
Confidence            479999999999999999999986  88899998765431     11111110111  12344 56899999999963

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.58  E-value=0.00046  Score=65.40  Aligned_cols=90  Identities=20%  Similarity=0.239  Sum_probs=58.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccCC---CCEEEEec
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTAG---SDLCIVTA  113 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~~---aDiVIi~~  113 (350)
                      |||+|||+|.||.+++..|+..+.  +|+++|+++++++.    +.+.     .  +..+.+.+ .+++   +|+||++.
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~g~--~v~v~dr~~~~~~~----~~~~-----g--~~~~~s~~~~~~~~~~advVi~~v   67 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLREDGH--EVVGYDVNQEAVDV----AGKL-----G--ITARHSLEELVSKLEAPRTIWVMV   67 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhCCC--EEEEEECCHHHHHH----HHHC-----C--CeecCCHHHHHHhCCCCCEEEEEe
Confidence            589999999999999999999885  89999999876653    3221     1  12233443 3443   69999996


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhc-cCCCeEEEEEcC
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVK-YSPDCILLIVAN  155 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~-~~p~a~viv~tN  155 (350)
                      ..+               +.++++...+.. ..++.++|..|+
T Consensus        68 p~~---------------~~~~~v~~~i~~~l~~g~ivid~st   95 (299)
T PRK12490         68 PAG---------------EVTESVIKDLYPLLSPGDIVVDGGN   95 (299)
T ss_pred             cCc---------------hHHHHHHHHHhccCCCCCEEEECCC
Confidence            321               122233333333 256778888854

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.57  E-value=0.00045  Score=63.93  Aligned_cols=68  Identities=29%  Similarity=0.401  Sum_probs=48.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCC-CCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDF-VEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~-~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      |||+|||+|.||.+++..|...+. ...+.++|+++++++.    +....   ...++  +.+. +.+++||+||++..
T Consensus         1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~----l~~~~---~~~~~--~~~~~~~~~~aDvVilav~   70 (258)
T PRK06476          1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAAR----LAERF---PKVRI--AKDNQAVVDRSDVVFLAVR   70 (258)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHH----HHHHc---CCceE--eCCHHHHHHhCCEEEEEeC
Confidence            589999999999999999998874 3467889988776542    33221   11222  3354 45789999999963

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=97.57  E-value=0.00044  Score=65.23  Aligned_cols=94  Identities=12%  Similarity=0.160  Sum_probs=59.9

Q ss_pred             CCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc---chHHHHHHHHHHhhc
Q 018760           12 PGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD---KLRGEMLDLQHAAAF   88 (350)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~---~l~~~~~dl~~~~~~   88 (350)
                      -||.||..++.    ....   ..+..+++|+|||..+++++..|+..+. .+|.+++++++   +++..+.++....  
T Consensus       106 TD~~Gf~~~l~----~~~~---~~~~k~vlvlGaGGaarAi~~~l~~~g~-~~i~i~nRt~~~~~ka~~la~~~~~~~--  175 (288)
T PRK12749        106 TDGTGHIRAIK----ESGF---DIKGKTMVLLGAGGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRVNENT--  175 (288)
T ss_pred             cCHHHHHHHHH----hcCC---CcCCCEEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCccHHHHHHHHHHHhhhcc--
Confidence            57888777775    3332   2334589999999999999999988876 69999999864   5554444443211  


Q ss_pred             CCCceEEEcCC---c-cccCCCCEEEEecCC
Q 018760           89 LPRTKILASVD---Y-AVTAGSDLCIVTAGA  115 (350)
Q Consensus        89 ~~~~~v~~t~~---~-~al~~aDiVIi~~g~  115 (350)
                      .....+....+   . +++.++|+||.+...
T Consensus       176 ~~~~~~~~~~~~~~l~~~~~~aDivINaTp~  206 (288)
T PRK12749        176 DCVVTVTDLADQQAFAEALASADILTNGTKV  206 (288)
T ss_pred             CceEEEechhhhhhhhhhcccCCEEEECCCC
Confidence            01112211111   1 256789999998543

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.56  E-value=0.00036  Score=65.49  Aligned_cols=93  Identities=14%  Similarity=0.253  Sum_probs=63.9

Q ss_pred             CCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCC
Q 018760           12 PGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR   91 (350)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~   91 (350)
                      -||.||...+.+.   ...   ..+..++.|+|+|.+|.+++..|...+. .+|++++++.++++..+..+....    .
T Consensus       104 TD~~G~~~~l~~~---~~~---~~~~k~vlVlGaGg~a~ai~~aL~~~g~-~~V~v~~R~~~~a~~l~~~~~~~~----~  172 (278)
T PRK00258        104 TDGIGFVRALEER---LGV---DLKGKRILILGAGGAARAVILPLLDLGV-AEITIVNRTVERAEELAKLFGALG----K  172 (278)
T ss_pred             ccHHHHHHHHHhc---cCC---CCCCCEEEEEcCcHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhhhcc----c
Confidence            5788888777521   111   2334589999999999999999998885 589999999988776554443211    1


Q ss_pred             ceEEEcCCc-cccCCCCEEEEecCCCc
Q 018760           92 TKILASVDY-AVTAGSDLCIVTAGARQ  117 (350)
Q Consensus        92 ~~v~~t~~~-~al~~aDiVIi~~g~~~  117 (350)
                      ..+  ..+. +.+.++|+||.+.....
T Consensus       173 ~~~--~~~~~~~~~~~DivInaTp~g~  197 (278)
T PRK00258        173 AEL--DLELQEELADFDLIINATSAGM  197 (278)
T ss_pred             eee--cccchhccccCCEEEECCcCCC
Confidence            122  1122 56789999999965443

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=97.55  E-value=0.00057  Score=65.77  Aligned_cols=112  Identities=20%  Similarity=0.212  Sum_probs=70.4

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      ...++|+|||+|.+|+.+|..|...|.  +|+.+|++++...    .   .        +..+.+. +.+++||+|+++.
T Consensus       144 l~g~~VgIIG~G~IG~~vA~~L~~~G~--~V~~~d~~~~~~~----~---~--------~~~~~~l~ell~~aDiVil~l  206 (330)
T PRK12480        144 VKNMTVAIIGTGRIGAATAKIYAGFGA--TITAYDAYPNKDL----D---F--------LTYKDSVKEAIKDADIISLHV  206 (330)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEeCChhHhh----h---h--------hhccCCHHHHHhcCCEEEEeC
Confidence            355799999999999999999988775  9999999864321    0   0        1112355 5789999999996


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                      ....   +        +..++.  .+.+....|++++|+++--.-+-...+.+.  +...++-|.
T Consensus       207 P~t~---~--------t~~li~--~~~l~~mk~gavlIN~aRG~~vd~~aL~~a--L~~g~i~ga  256 (330)
T PRK12480        207 PANK---E--------SYHLFD--KAMFDHVKKGAILVNAARGAVINTPDLIAA--VNDGTLLGA  256 (330)
T ss_pred             CCcH---H--------HHHHHh--HHHHhcCCCCcEEEEcCCccccCHHHHHHH--HHcCCeeEE
Confidence            4221   1        111111  122333357899999986544444444433  334566555

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.54  E-value=0.00081  Score=60.04  Aligned_cols=35  Identities=23%  Similarity=0.456  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      +..||+|+|+|.+|+.++..|+..|+ .+|+|+|.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gv-g~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGI-GKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCC-CEEEEECCC
Confidence            45689999999999999999999997 689999998

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.52  E-value=0.00058  Score=65.15  Aligned_cols=104  Identities=17%  Similarity=0.273  Sum_probs=68.0

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      ...+||+|||+|.||..++..|...+. .+|+++|+++++++..+..+.        ..+....+. +.+.++|+||.+.
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~-~~V~v~~r~~~ra~~la~~~g--------~~~~~~~~~~~~l~~aDvVi~at  246 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGV-AEITIANRTYERAEELAKELG--------GNAVPLDELLELLNEADVVISAT  246 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHcC--------CeEEeHHHHHHHHhcCCEEEECC
Confidence            356799999999999999988887553 589999999887654332221        122222233 5688999999998


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHHH
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILTY  162 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~~  162 (350)
                      +.+..            ..++.+.   +... .+..+++-+++|-|+-..
T Consensus       247 ~~~~~------------~~~~~~~---~~~~~~~~~~viDlavPrdi~~~  281 (311)
T cd05213         247 GAPHY------------AKIVERA---MKKRSGKPRLIVDLAVPRDIEPE  281 (311)
T ss_pred             CCCch------------HHHHHHH---HhhCCCCCeEEEEeCCCCCCchh
Confidence            75531            0111111   1111 245688999999986533

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.52  E-value=0.00045  Score=64.53  Aligned_cols=91  Identities=20%  Similarity=0.295  Sum_probs=61.3

Q ss_pred             CCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCC
Q 018760           12 PGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR   91 (350)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~   91 (350)
                      -||.||.+.+.    ....   ..+.+++.|+|+|.+|.+++..|+..+.  +|.++|+++++++..+..+....    .
T Consensus        99 TD~~G~~~~l~----~~~~---~~~~k~vliiGaGg~g~aia~~L~~~g~--~v~v~~R~~~~~~~la~~~~~~~----~  165 (270)
T TIGR00507        99 TDGIGLVSDLE----RLIP---LRPNQRVLIIGAGGAARAVALPLLKADC--NVIIANRTVSKAEELAERFQRYG----E  165 (270)
T ss_pred             CCHHHHHHHHH----hcCC---CccCCEEEEEcCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhcC----c
Confidence            47888888765    2122   2334689999999999999999998874  89999999887765554443211    1


Q ss_pred             ceEEEcCCccccCCCCEEEEecCCC
Q 018760           92 TKILASVDYAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        92 ~~v~~t~~~~al~~aDiVIi~~g~~  116 (350)
                      .... +.+...+.++|+||.+.+..
T Consensus       166 ~~~~-~~~~~~~~~~DivInatp~g  189 (270)
T TIGR00507       166 IQAF-SMDELPLHRVDLIINATSAG  189 (270)
T ss_pred             eEEe-chhhhcccCccEEEECCCCC
Confidence            1111 11222356899999997653

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.49  E-value=0.00071  Score=62.74  Aligned_cols=115  Identities=17%  Similarity=0.314  Sum_probs=75.9

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc-----CCccc------
Q 018760           35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS-----VDYAV------  102 (350)
Q Consensus        35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t-----~~~~a------  102 (350)
                      .+++.+.|.|| +.+|..+|..|+.+|.  +|+|+.+++++|+..+.++++...  ..+.+...     .+.+.      
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~~--v~v~vi~~DLs~~~~~~~l~~~l~   79 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKTG--VEVEVIPADLSDPEALERLEDELK   79 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhhC--ceEEEEECcCCChhHHHHHHHHHH
Confidence            44568999999 9999999999999996  999999999999999999987652  12233321     11111      


Q ss_pred             --cCCCCEEEEecCCCcCc------cccHHHHHHhhHHHH----HHHHhhhhccCCCeEEEEEc
Q 018760          103 --TAGSDLCIVTAGARQIA------GESRLNLLQRNLSLF----KAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       103 --l~~aDiVIi~~g~~~~~------g~~r~~~~~~n~~i~----~~i~~~i~~~~p~a~viv~t  154 (350)
                        ....|++|+.+|+....      -.+-.+++.-|+.-.    +.+.+.|.+-. .+-||+++
T Consensus        80 ~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~-~G~IiNI~  142 (265)
T COG0300          80 ERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERG-AGHIINIG  142 (265)
T ss_pred             hcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEe
Confidence              12589999999875421      112344555565444    44455555533 34566664

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=97.49  E-value=0.0021  Score=64.27  Aligned_cols=113  Identities=15%  Similarity=0.177  Sum_probs=73.8

Q ss_pred             CCCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc--cccCCCCEE
Q 018760           33 PTKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY--AVTAGSDLC  109 (350)
Q Consensus        33 ~~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~--~al~~aDiV  109 (350)
                      ...+.|||.|+|| |.+|+.++..|+..|.  +|+.+|+.......   .+.+... .....+.. .|.  ..+.++|+|
T Consensus       116 ~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~~~~~---~~~~~~~-~~~~~~~~-~Di~~~~~~~~D~V  188 (436)
T PLN02166        116 IGRKRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFTGRKE---NLVHLFG-NPRFELIR-HDVVEPILLEVDQI  188 (436)
T ss_pred             cccCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCccHh---Hhhhhcc-CCceEEEE-CccccccccCCCEE
Confidence            4556799999998 9999999999999985  99999985321111   1111110 01223332 232  357899999


Q ss_pred             EEecCCCc--CccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          110 IVTAGARQ--IAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       110 Ii~~g~~~--~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |-+++...  ....+..+.+..|+.-...+++.+.+.+.  .+|.+|
T Consensus       189 iHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~S  233 (436)
T PLN02166        189 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTS  233 (436)
T ss_pred             EECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEEC
Confidence            99986422  11234456677899988999988888653  455554

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.47  E-value=0.00072  Score=64.12  Aligned_cols=63  Identities=16%  Similarity=0.279  Sum_probs=45.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccC---CCCEEEEec
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTA---GSDLCIVTA  113 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~---~aDiVIi~~  113 (350)
                      |||+|||+|.||.+++..|+..+.  +|.++|+++++++.    +.+.     ...+  +.+.+ .++   ++|+||++.
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~--~v~v~dr~~~~~~~----~~~~-----g~~~--~~~~~e~~~~~~~~dvvi~~v   67 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGH--EVVGYDRNPEAVEA----LAEE-----GATG--ADSLEELVAKLPAPRVVWLMV   67 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCC--eEEEEECCHHHHHH----HHHC-----CCee--cCCHHHHHhhcCCCCEEEEEe
Confidence            589999999999999999999885  89999999877653    3221     1222  23442 233   479999985

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=97.42  E-value=0.0022  Score=60.76  Aligned_cols=132  Identities=19%  Similarity=0.395  Sum_probs=79.4

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHhcC----CC-CeEEEEeCCccchHHHHHHHHHHh-------hcC----CCceEEE
Q 018760           33 PTKRHTKISVIGTGNVGMAIAQTILTQD----FV-EELALVDAKADKLRGEMLDLQHAA-------AFL----PRTKILA   96 (350)
Q Consensus        33 ~~~~~~KI~IIGAG~vG~~~a~~l~~~~----~~-~ev~L~D~~~~~l~~~~~dl~~~~-------~~~----~~~~v~~   96 (350)
                      ....+.||+|||+|+=|+++|..+.+.-    .+ .+|...=.. +++.+....|.+..       -|.    ...++.+
T Consensus        17 ~~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~e-e~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvA   95 (372)
T KOG2711|consen   17 AERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFE-EEINGEAEKLTEIINSRHENVKYLPGIKLPENVVA   95 (372)
T ss_pred             hhcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEec-cccCChhHHHHHHhccccccccccCCccCCCCeEe
Confidence            3445689999999999999998776642    11 233333222 22222111222221       122    2345888


Q ss_pred             cCCc-cccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcC--------C-cchHHHHHH
Q 018760           97 SVDY-AVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVAN--------P-VDILTYVAW  165 (350)
Q Consensus        97 t~~~-~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN--------P-~~~~~~~~~  165 (350)
                      .+|. ++++|||++|.....                ..+.+++++|..+ .|++..|..+-        | +.+++.++.
T Consensus        96 v~dl~ea~~dADilvf~vPh----------------Qf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~  159 (372)
T KOG2711|consen   96 VPDLVEAAKDADILVFVVPH----------------QFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIH  159 (372)
T ss_pred             cchHHHHhccCCEEEEeCCh----------------hhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHH
Confidence            8887 789999999999632                3345566666665 56655555432        2 456788888


Q ss_pred             HHhCCCCCcEeeecCCcc
Q 018760          166 KLSGLPSNRVIGSGTNLD  183 (350)
Q Consensus       166 ~~sg~~~~rviG~g~~ld  183 (350)
                      +..|+|.. ++ +|+++.
T Consensus       160 ~~lgI~~~-vL-~GaNiA  175 (372)
T KOG2711|consen  160 RALGIPCS-VL-MGANIA  175 (372)
T ss_pred             HHhCCCce-ee-cCCchH
Confidence            88888755 33 556654

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=97.36  E-value=0.00073  Score=68.24  Aligned_cols=100  Identities=14%  Similarity=0.188  Sum_probs=64.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc----ccCCCCEEEE
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA----VTAGSDLCIV  111 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~----al~~aDiVIi  111 (350)
                      ..++|++||.|.||.++|..|+..|.  +|+.+|+++++.+..+.......    ...+....+.+    .++.+|+||+
T Consensus         5 ~~~~IG~IGLG~MG~~mA~nL~~~G~--~V~V~NRt~~k~~~l~~~~~~~G----a~~~~~a~s~~e~v~~l~~~dvIi~   78 (493)
T PLN02350          5 ALSRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKKEG----NLPLYGFKDPEDFVLSIQKPRSVII   78 (493)
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHhCCC--eEEEECCCHHHHHHHHHhhhhcC----CcccccCCCHHHHHhcCCCCCEEEE
Confidence            34589999999999999999999996  99999999988764322111100    01122233442    3445999999


Q ss_pred             ecCCCcCccccHHHHHHhhHHHHHHHHhhhhc-cCCCeEEEEEcCC
Q 018760          112 TAGARQIAGESRLNLLQRNLSLFKAIIPPLVK-YSPDCILLIVANP  156 (350)
Q Consensus       112 ~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~-~~p~a~viv~tNP  156 (350)
                      +...+               +.++++...+.. ..|+.++|..||-
T Consensus        79 ~v~~~---------------~aV~~Vi~gl~~~l~~G~iiID~sT~  109 (493)
T PLN02350         79 LVKAG---------------APVDQTIKALSEYMEPGDCIIDGGNE  109 (493)
T ss_pred             ECCCc---------------HHHHHHHHHHHhhcCCCCEEEECCCC
Confidence            96322               223333333333 3577888888764

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.34  E-value=0.00096  Score=64.17  Aligned_cols=75  Identities=19%  Similarity=0.245  Sum_probs=56.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ..++|+|||+|..|...+..+....-+.+|.++++++++++..+.++++..    ..++....+. +++.+||+||.+..
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~----g~~v~~~~d~~~al~~aDiVi~aT~  206 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL----GIPVTVARDVHEAVAGADIIVTTTP  206 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc----CceEEEeCCHHHHHccCCEEEEeeC
Confidence            346899999999999988877753335799999999998887666665432    2345445565 67899999999854

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.33  E-value=0.00018  Score=65.37  Aligned_cols=68  Identities=22%  Similarity=0.461  Sum_probs=49.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEE-E-cCC---c-cc-cCCCCEEE
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKIL-A-SVD---Y-AV-TAGSDLCI  110 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~-~-t~~---~-~a-l~~aDiVI  110 (350)
                      |+|+|+|+|.+|+++|..|.+.|.  +|+++|.++++++..   +++..    ...+. . .++   + ++ +.++|.+|
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~--~Vv~Id~d~~~~~~~---~~~~~----~~~~v~gd~t~~~~L~~agi~~aD~vv   71 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGH--NVVLIDRDEERVEEF---LADEL----DTHVVIGDATDEDVLEEAGIDDADAVV   71 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCC--ceEEEEcCHHHHHHH---hhhhc----ceEEEEecCCCHHHHHhcCCCcCCEEE
Confidence            689999999999999999999985  999999999877632   22111    11222 1 223   2 34 88999999


Q ss_pred             EecC
Q 018760          111 VTAG  114 (350)
Q Consensus       111 i~~g  114 (350)
                      .+.+
T Consensus        72 a~t~   75 (225)
T COG0569          72 AATG   75 (225)
T ss_pred             EeeC
Confidence            9865

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.32  E-value=0.0011  Score=57.92  Aligned_cols=33  Identities=30%  Similarity=0.500  Sum_probs=30.3

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      ||+|||+|.+|+.++..|+..|+ .+++|+|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gv-g~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGV-GNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            68999999999999999999997 6899999875

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PLN02712 arogenate dehydrogenase

Probab=97.31  E-value=0.0022  Score=67.27  Aligned_cols=67  Identities=19%  Similarity=0.264  Sum_probs=46.6

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-c-CCCCEEE
Q 018760           33 PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-T-AGSDLCI  110 (350)
Q Consensus        33 ~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l-~~aDiVI  110 (350)
                      ...+++||+|||+|.||..++..|...|.  +|+.+|++..+.     ...+ .    ...  ..++.++ + ++||+||
T Consensus        48 ~~~~~~kIgIIG~G~mG~slA~~L~~~G~--~V~~~dr~~~~~-----~A~~-~----Gv~--~~~d~~e~~~~~aDvVi  113 (667)
T PLN02712         48 DNTTQLKIAIIGFGNYGQFLAKTLISQGH--TVLAHSRSDHSL-----AARS-L----GVS--FFLDPHDLCERHPDVIL  113 (667)
T ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHCCC--EEEEEeCCHHHH-----HHHH-c----CCE--EeCCHHHHhhcCCCEEE
Confidence            34456899999999999999999998884  899999975321     1111 1    112  2335533 3 5799999


Q ss_pred             Eec
Q 018760          111 VTA  113 (350)
Q Consensus       111 i~~  113 (350)
                      ++.
T Consensus       114 Lav  116 (667)
T PLN02712        114 LCT  116 (667)
T ss_pred             EcC
Confidence            996

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.31  E-value=0.00086  Score=63.29  Aligned_cols=93  Identities=18%  Similarity=0.278  Sum_probs=59.7

Q ss_pred             CCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc---cchHHHHHHHHHHhhc
Q 018760           12 PGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA---DKLRGEMLDLQHAAAF   88 (350)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~---~~l~~~~~dl~~~~~~   88 (350)
                      -||.||...+.    ..+.   ..+..++.|+|||.+|.+++..|+..|. .+|+++++++   ++++..+.++....  
T Consensus       108 TD~~G~~~~l~----~~~~---~~~~k~vlI~GAGGagrAia~~La~~G~-~~V~I~~R~~~~~~~a~~l~~~l~~~~--  177 (289)
T PRK12548        108 TDGLGFVRNLR----EHGV---DVKGKKLTVIGAGGAATAIQVQCALDGA-KEITIFNIKDDFYERAEQTAEKIKQEV--  177 (289)
T ss_pred             cCHHHHHHHHH----hcCC---CcCCCEEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCchHHHHHHHHHHHHhhcC--
Confidence            37777777665    3332   2234579999999999999999999885 5799999987   56665554453321  


Q ss_pred             CCCceEEEc--CC---c-cccCCCCEEEEecCC
Q 018760           89 LPRTKILAS--VD---Y-AVTAGSDLCIVTAGA  115 (350)
Q Consensus        89 ~~~~~v~~t--~~---~-~al~~aDiVIi~~g~  115 (350)
                       ....+...  ++   . +.++.+|+||.+...
T Consensus       178 -~~~~~~~~d~~~~~~~~~~~~~~DilINaTp~  209 (289)
T PRK12548        178 -PECIVNVYDLNDTEKLKAEIASSDILVNATLV  209 (289)
T ss_pred             -CCceeEEechhhhhHHHhhhccCCEEEEeCCC
Confidence             11112111  11   1 245678999998543

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=97.30  E-value=0.0012  Score=54.85  Aligned_cols=73  Identities=22%  Similarity=0.377  Sum_probs=50.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc-------------------cchHHHHHHHHHHhhcCCCceEEEc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA-------------------DKLRGEMLDLQHAAAFLPRTKILAS   97 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~v~~t   97 (350)
                      ..||+|+|+|.+|+.++..|+..|+ .++.|+|-+.                   .|++.....++...   |..++...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv-~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~n---p~~~v~~~   77 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGV-GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEIN---PDVEVEAI   77 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTT-SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHS---TTSEEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCC-CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhc---Cceeeeee
Confidence            4699999999999999999999997 6999999642                   23333333344332   34555543


Q ss_pred             CC------c-cccCCCCEEEEec
Q 018760           98 VD------Y-AVTAGSDLCIVTA  113 (350)
Q Consensus        98 ~~------~-~al~~aDiVIi~~  113 (350)
                      ..      . +.++++|+||.+.
T Consensus        78 ~~~~~~~~~~~~~~~~d~vi~~~  100 (135)
T PF00899_consen   78 PEKIDEENIEELLKDYDIVIDCV  100 (135)
T ss_dssp             ESHCSHHHHHHHHHTSSEEEEES
T ss_pred             ecccccccccccccCCCEEEEec
Confidence            22      1 3467999999985

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.30  E-value=0.0011  Score=63.62  Aligned_cols=75  Identities=15%  Similarity=0.203  Sum_probs=55.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ...+|+|||+|.+|...+..++...-+.+|.++|+++++++.....+.+..    ..++....+. +++.+||+||.+.+
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~aDiVi~aT~  201 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF----NTEIYVVNSADEAIEEADIIVTVTN  201 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc----CCcEEEeCCHHHHHhcCCEEEEccC
Confidence            346899999999998888776644335899999999998887666665432    2234444565 57899999999864

>PLN02256 arogenate dehydrogenase

Probab=97.30  E-value=0.003  Score=60.11  Aligned_cols=67  Identities=19%  Similarity=0.296  Sum_probs=46.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-cc-CCCCEEEE
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VT-AGSDLCIV  111 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al-~~aDiVIi  111 (350)
                      +.+.+||+|||+|.||..++..|...+.  +|+.+|.++.  .    +.....    ....  .++.+ .+ .++|+||+
T Consensus        33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~--~V~~~d~~~~--~----~~a~~~----gv~~--~~~~~e~~~~~aDvVil   98 (304)
T PLN02256         33 KSRKLKIGIVGFGNFGQFLAKTFVKQGH--TVLATSRSDY--S----DIAAEL----GVSF--FRDPDDFCEEHPDVVLL   98 (304)
T ss_pred             cCCCCEEEEEeeCHHHHHHHHHHHhCCC--EEEEEECccH--H----HHHHHc----CCee--eCCHHHHhhCCCCEEEE
Confidence            3456899999999999999999988874  8999998853  1    111111    1122  33443 33 47999999


Q ss_pred             ecC
Q 018760          112 TAG  114 (350)
Q Consensus       112 ~~g  114 (350)
                      ++.
T Consensus        99 avp  101 (304)
T PLN02256         99 CTS  101 (304)
T ss_pred             ecC
Confidence            963

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.24  E-value=0.0028  Score=56.83  Aligned_cols=94  Identities=20%  Similarity=0.338  Sum_probs=67.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCC-CCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-cCCCCEEEEecCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDF-VEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-TAGSDLCIVTAGA  115 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~-~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l~~aDiVIi~~g~  115 (350)
                      |||.+||+|.+|..+...+-.... +.-+.+||.+.+++..    +.....    .+.  .++.++ +.+.|++|.+++ 
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~----~~~~~~----~~~--~s~ide~~~~~DlvVEaAS-   69 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKE----LEASVG----RRC--VSDIDELIAEVDLVVEAAS-   69 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHH----HHhhcC----CCc--cccHHHHhhccceeeeeCC-
Confidence            689999999999998877776532 4678889999987763    332211    111  145544 599999999974 


Q ss_pred             CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc
Q 018760          116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV  157 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~  157 (350)
                                     .+.+++++.++-+.+.|-+|+.++-=+
T Consensus        70 ---------------~~Av~e~~~~~L~~g~d~iV~SVGALa   96 (255)
T COG1712          70 ---------------PEAVREYVPKILKAGIDVIVMSVGALA   96 (255)
T ss_pred             ---------------HHHHHHHhHHHHhcCCCEEEEechhcc
Confidence                           467889999999888887766665433

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.23  E-value=0.0016  Score=58.72  Aligned_cols=35  Identities=29%  Similarity=0.526  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      +..||+|||+|.+|+.++..|+..|+ .+++|+|.|
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gv-g~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGV-GNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence            35689999999999999999999997 689999987

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.23  E-value=0.0014  Score=62.93  Aligned_cols=74  Identities=15%  Similarity=0.205  Sum_probs=55.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ...+++|||+|.+|...+..+.....+.+|.++|+++++++..+.++.+   +  ..++....+. +++++||+|+.+..
T Consensus       127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~---~--g~~v~~~~~~~eav~~aDiVitaT~  201 (325)
T TIGR02371       127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD---Y--EVPVRAATDPREAVEGCDILVTTTP  201 (325)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh---h--CCcEEEeCCHHHHhccCCEEEEecC
Confidence            4568999999999998777666554568999999999988866666653   1  2234445565 67999999999853

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PLN02206 UDP-glucuronate decarboxylase

Probab=97.22  E-value=0.0049  Score=61.73  Aligned_cols=111  Identities=13%  Similarity=0.160  Sum_probs=70.8

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc--cccCCCCEEEE
Q 018760           35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY--AVTAGSDLCIV  111 (350)
Q Consensus        35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~--~al~~aDiVIi  111 (350)
                      .+.|||.|+|+ |.+|++++..|++.+.  +|+.+|........   .+.+... ....++.. .|.  ..+.++|+||-
T Consensus       117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~~~~~---~~~~~~~-~~~~~~i~-~D~~~~~l~~~D~ViH  189 (442)
T PLN02206        117 RKGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFTGRKE---NVMHHFS-NPNFELIR-HDVVEPILLEVDQIYH  189 (442)
T ss_pred             cCCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCccchh---hhhhhcc-CCceEEEE-CCccChhhcCCCEEEE
Confidence            35689999998 9999999999999985  89999875332211   1111110 11233332 232  35678999999


Q ss_pred             ecCCCc--CccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          112 TAGARQ--IAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       112 ~~g~~~--~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +++...  .......+.+..|+.....+.+.+++...  .+|.+|
T Consensus       190 lAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~--r~V~~S  232 (442)
T PLN02206        190 LACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS  232 (442)
T ss_pred             eeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEEC
Confidence            986432  11123456677888888888888877642  455554

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.21  E-value=0.0019  Score=57.75  Aligned_cols=75  Identities=16%  Similarity=0.254  Sum_probs=51.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc-------------------cchHHHHHHHHHHhhcCCCceEEE
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA-------------------DKLRGEMLDLQHAAAFLPRTKILA   96 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~v~~   96 (350)
                      +..||.|+|+|.+|+.++..|+..|+ .+|+|+|.+.                   .|++..+..+....   +..++..
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv-~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n---p~v~i~~   95 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGV-GTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN---SDIQVTA   95 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCC-CeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC---CCCEEEE
Confidence            35689999999999999999999996 6999999872                   23333333343322   3444442


Q ss_pred             cCC------c-cccCCCCEEEEecC
Q 018760           97 SVD------Y-AVTAGSDLCIVTAG  114 (350)
Q Consensus        97 t~~------~-~al~~aDiVIi~~g  114 (350)
                      ...      . +.++++|+||.+..
T Consensus        96 ~~~~i~~~~~~~~~~~~D~Vi~~~d  120 (202)
T TIGR02356        96 LKERVTAENLELLINNVDLVLDCTD  120 (202)
T ss_pred             ehhcCCHHHHHHHHhCCCEEEECCC
Confidence            211      1 24789999998853

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=97.21  E-value=0.0016  Score=61.66  Aligned_cols=63  Identities=19%  Similarity=0.234  Sum_probs=46.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      |||+|||.|.||.+++..|+..+.  +|.++|+++. .+    .+...     ....  ..+. +..++||+||++..
T Consensus         1 m~Ig~IGlG~MG~~ma~~L~~~G~--~v~v~~~~~~-~~----~~~~~-----g~~~--~~s~~~~~~~advVi~~v~   64 (292)
T PRK15059          1 MKLGFIGLGIMGTPMAINLARAGH--QLHVTTIGPV-AD----ELLSL-----GAVS--VETARQVTEASDIIFIMVP   64 (292)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC--eEEEEeCCHh-HH----HHHHc-----CCee--cCCHHHHHhcCCEEEEeCC
Confidence            589999999999999999999995  8999999763 22    23221     1122  2233 56789999999963

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.21  E-value=0.0018  Score=62.24  Aligned_cols=75  Identities=15%  Similarity=0.199  Sum_probs=56.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ...+++|||+|.++...+..|+...-+.+|.++++++++++..+.++.+..    ..++....+. +++.+||+||.+..
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~----g~~v~~~~~~~~av~~aDiVvtaT~  203 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL----GIDVTAATDPRAAMSGADIIVTTTP  203 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc----CceEEEeCCHHHHhccCCEEEEecC
Confidence            346899999999999998888743335799999999999887766665422    2345444565 57899999999854

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.21  E-value=0.0031  Score=61.71  Aligned_cols=53  Identities=13%  Similarity=0.314  Sum_probs=42.6

Q ss_pred             CCCeEEEEc-CChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           36 RHTKISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        36 ~~~KI~IIG-AG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      ..+||+||| +|.||..++..|...|.  +|.++|+++.                        ++. +.+++||+||+++
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~------------------------~~~~~~~~~aDlVilav  150 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW------------------------DRAEDILADAGMVIVSV  150 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc------------------------hhHHHHHhcCCEEEEeC
Confidence            447999999 79999999999999985  8999998531                        012 4467899999996


Q ss_pred             C
Q 018760          114 G  114 (350)
Q Consensus       114 g  114 (350)
                      .
T Consensus       151 P  151 (374)
T PRK11199        151 P  151 (374)
T ss_pred             c
Confidence            3

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=97.20  E-value=0.001  Score=66.97  Aligned_cols=98  Identities=19%  Similarity=0.256  Sum_probs=63.1

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc----cccCCCCEEEEecC
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY----AVTAGSDLCIVTAG  114 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~----~al~~aDiVIi~~g  114 (350)
                      +|+|||.|.||.++|..|+..|.  +|+++|+++++++.    +.....  ....+....+.    +.++.+|+|++++.
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~--~V~v~drt~~~~~~----l~~~~~--~g~~~~~~~s~~e~v~~l~~~dvIil~v~   72 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGF--TVSVYNRTPEKTDE----FLAEHA--KGKKIVGAYSIEEFVQSLERPRKIMLMVK   72 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCC--eEEEEeCCHHHHHH----HHhhcc--CCCCceecCCHHHHHhhcCCCCEEEEECC
Confidence            48999999999999999999996  89999999987763    332100  00012222333    24567999999863


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcC--Ccch
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVAN--PVDI  159 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN--P~~~  159 (350)
                      .    +           +.+.++...+..+ .++.++|..||  |.+.
T Consensus        73 ~----~-----------~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t  105 (467)
T TIGR00873        73 A----G-----------APVDAVINQLLPLLEKGDIIIDGGNSHYPDT  105 (467)
T ss_pred             C----c-----------HHHHHHHHHHHhhCCCCCEEEECCCcCHHHH
Confidence            2    1           2223333444443 57788888887  4444

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=97.17  E-value=0.0037  Score=66.57  Aligned_cols=68  Identities=21%  Similarity=0.320  Sum_probs=49.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      .||+|||+|.||..++..+...++..+|+.+|+++++++.    .....     .....+++. ++++++|+||++..
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~----a~~~g-----~~~~~~~~~~~~~~~aDvVilavp   72 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLEL----AVSLG-----VIDRGEEDLAEAVSGADVIVLAVP   72 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHH----HHHCC-----CCCcccCCHHHHhcCCCEEEECCC
Confidence            5899999999999999999988854579999999876542    11111     111123344 56889999999964

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.14  E-value=0.0021  Score=61.00  Aligned_cols=75  Identities=11%  Similarity=0.067  Sum_probs=58.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ...+++|||+|..+...+..++.-..+.+|.++|+++++++..+.++.+..    ..++....+. +++++||+|+.+..
T Consensus       116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~----~~~v~~~~~~~eav~~aDIV~taT~  191 (301)
T PRK06407        116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF----GVDIRPVDNAEAALRDADTITSITN  191 (301)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc----CCcEEEeCCHHHHHhcCCEEEEecC
Confidence            346899999999999888777765556899999999999987777776532    2345555565 67999999998754

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=97.14  E-value=0.0045  Score=59.12  Aligned_cols=116  Identities=19%  Similarity=0.242  Sum_probs=71.2

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      .+.++|+|||.|++|+.+|..|..-|.  +|..+|...+...+    +.         ......+. +.+++||+|+++.
T Consensus       134 l~g~tvgIvG~G~IG~~vA~~l~afG~--~V~~~~~~~~~~~~----~~---------~~~~~~~l~e~l~~aDvvv~~l  198 (312)
T PRK15469        134 REDFTIGILGAGVLGSKVAQSLQTWGF--PLRCWSRSRKSWPG----VQ---------SFAGREELSAFLSQTRVLINLL  198 (312)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCCCCCCC----ce---------eecccccHHHHHhcCCEEEECC
Confidence            345799999999999999999998786  89999986543211    00         11111244 5689999999996


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecC
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGT  180 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~  180 (350)
                      ....           .|..++.  .+.+....|++++||++--.=+-...+.+.  +...++.|.+.
T Consensus       199 Plt~-----------~T~~li~--~~~l~~mk~ga~lIN~aRG~vVde~aL~~a--L~~g~i~gaal  250 (312)
T PRK15469        199 PNTP-----------ETVGIIN--QQLLEQLPDGAYLLNLARGVHVVEDDLLAA--LDSGKVKGAML  250 (312)
T ss_pred             CCCH-----------HHHHHhH--HHHHhcCCCCcEEEECCCccccCHHHHHHH--HhcCCeeeEEe
Confidence            3221           1222221  234455568899999984433333344333  33456665543

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=97.13  E-value=0.0023  Score=59.69  Aligned_cols=68  Identities=24%  Similarity=0.327  Sum_probs=46.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcC-CCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-cCCCCEEEEecC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQD-FVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-TAGSDLCIVTAG  114 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~-~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l~~aDiVIi~~g  114 (350)
                      +|||+|||+|.+|..++..+...+ -+.-+.++|+++++++.    +....    ...+  .+++++ +.++|+|+++++
T Consensus         1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~----~a~~~----~~~~--~~~~~ell~~~DvVvi~a~   70 (265)
T PRK13304          1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAEN----LASKT----GAKA--CLSIDELVEDVDLVVECAS   70 (265)
T ss_pred             CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHH----HHHhc----CCee--ECCHHHHhcCCCEEEEcCC
Confidence            379999999999999998888764 22336679998876553    22211    1222  346644 589999999963

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.13  E-value=0.0027  Score=65.01  Aligned_cols=116  Identities=12%  Similarity=0.134  Sum_probs=69.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh----hcC--CCceEEEc--CCc----cc
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA----AFL--PRTKILAS--VDY----AV  102 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~----~~~--~~~~v~~t--~~~----~a  102 (350)
                      +...|.|+|| |.+|..++..|+..|.  +|++++++.+++......+....    ...  ....+...  ++.    ++
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a  156 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA  156 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence            3457899999 9999999999999885  89999999887765444443210    000  11222211  122    34


Q ss_pred             cCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          103 TAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +.++|+||.++|........-...+.-|..-...+++.+.+..-.. +|++|
T Consensus       157 LggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgR-IV~VS  207 (576)
T PLN03209        157 LGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNH-FILVT  207 (576)
T ss_pred             hcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCE-EEEEc
Confidence            7899999999876432211111223345555666777766654333 44444

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=97.12  E-value=0.0024  Score=61.27  Aligned_cols=68  Identities=15%  Similarity=0.171  Sum_probs=48.9

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEE
Q 018760           33 PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIV  111 (350)
Q Consensus        33 ~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi  111 (350)
                      ...+.+||+|||.|++|.+++..|...|+  +|+..+.+.++...    .....    ...+  . +. ++++.||+|++
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s~~----~A~~~----G~~~--~-s~~eaa~~ADVVvL   79 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGV--DVVVGLREGSKSWK----KAEAD----GFEV--L-TVAEAAKWADVIMI   79 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCC--EEEEEECCchhhHH----HHHHC----CCee--C-CHHHHHhcCCEEEE
Confidence            34556799999999999999999999986  88888876544322    11111    1122  2 44 67899999999


Q ss_pred             ec
Q 018760          112 TA  113 (350)
Q Consensus       112 ~~  113 (350)
                      ++
T Consensus        80 aV   81 (330)
T PRK05479         80 LL   81 (330)
T ss_pred             cC
Confidence            96

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.12  E-value=0.0012  Score=66.70  Aligned_cols=86  Identities=16%  Similarity=0.157  Sum_probs=58.9

Q ss_pred             CCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCC
Q 018760           12 PGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR   91 (350)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~   91 (350)
                      -||.||...+.    +...   ..+.+++.|+|+|.+|.+++..|...|.  +|+++|+++++++.....+.        
T Consensus       314 TD~~G~~~~l~----~~~~---~~~~k~vlIiGaGgiG~aia~~L~~~G~--~V~i~~R~~~~~~~la~~~~--------  376 (477)
T PRK09310        314 TDGEGLFSLLK----QKNI---PLNNQHVAIVGAGGAAKAIATTLARAGA--ELLIFNRTKAHAEALASRCQ--------  376 (477)
T ss_pred             cCHHHHHHHHH----hcCC---CcCCCEEEEEcCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc--------
Confidence            47888877775    3222   2344689999999999999999999885  89999998876654322211        


Q ss_pred             ceEEEcCCccccCCCCEEEEecC
Q 018760           92 TKILASVDYAVTAGSDLCIVTAG  114 (350)
Q Consensus        92 ~~v~~t~~~~al~~aDiVIi~~g  114 (350)
                      .......+.+++.++|+||+|..
T Consensus       377 ~~~~~~~~~~~l~~~DiVInatP  399 (477)
T PRK09310        377 GKAFPLESLPELHRIDIIINCLP  399 (477)
T ss_pred             cceechhHhcccCCCCEEEEcCC
Confidence            01111123345789999999964

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=97.11  E-value=0.0011  Score=61.79  Aligned_cols=85  Identities=24%  Similarity=0.420  Sum_probs=59.9

Q ss_pred             hhhccccCCCCCC----CCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEE
Q 018760           20 TFFKPINHAAPPS----PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKIL   95 (350)
Q Consensus        20 ~~~~~~~~~~~~~----~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~   95 (350)
                      .|.+.+.++....    ......+|..||.|.||++++..|+..|+  .|+.||++.++.+    ++++.-     .++.
T Consensus        14 ~~~~~~~~~~~~~~s~~~~~s~~~iGFIGLG~MG~~M~~nLik~G~--kVtV~dr~~~k~~----~f~~~G-----a~v~   82 (327)
T KOG0409|consen   14 AFSRRLVKASETAMSSRITPSKTRIGFIGLGNMGSAMVSNLIKAGY--KVTVYDRTKDKCK----EFQEAG-----ARVA   82 (327)
T ss_pred             hhcccccccccccccccCCcccceeeEEeeccchHHHHHHHHHcCC--EEEEEeCcHHHHH----HHHHhc-----hhhh
Confidence            3444455533322    23335799999999999999999999996  9999999887654    566543     2343


Q ss_pred             EcCCccccCCCCEEEEecCCC
Q 018760           96 ASVDYAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        96 ~t~~~~al~~aDiVIi~~g~~  116 (350)
                      . +..|-.++||+||.+.+.|
T Consensus        83 ~-sPaeVae~sDvvitmv~~~  102 (327)
T KOG0409|consen   83 N-SPAEVAEDSDVVITMVPNP  102 (327)
T ss_pred             C-CHHHHHhhcCEEEEEcCCh
Confidence            1 1236689999999997654

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=97.10  E-value=0.0051  Score=57.38  Aligned_cols=127  Identities=20%  Similarity=0.337  Sum_probs=83.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhc----CCC-----CeEEEEeCCc----cc--hHHHHHHHHHHhhcCCCceEEEcCCc-
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQ----DFV-----EELALVDAKA----DK--LRGEMLDLQHAAAFLPRTKILASVDY-  100 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~----~~~-----~ev~L~D~~~----~~--l~~~~~dl~~~~~~~~~~~v~~t~~~-  100 (350)
                      ..||+|.|||+.|..++.+|...    |+-     ..++++|.+-    ++  +......+.+..   ..   ....++ 
T Consensus        25 d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~---~~---~~~~~L~   98 (279)
T cd05312          25 DQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD---EE---KEGKSLL   98 (279)
T ss_pred             hcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc---Cc---ccCCCHH
Confidence            46999999999999999877765    652     5899999853    22  222222222211   11   112355 


Q ss_pred             cccC--CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc---hHHHHHHHHhCCCCCcE
Q 018760          101 AVTA--GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD---ILTYVAWKLSGLPSNRV  175 (350)
Q Consensus       101 ~al~--~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~---~~~~~~~~~sg~~~~rv  175 (350)
                      ++++  ++|++|=+.+.+   |-           +-+++.+.|.++|++.+|+-.|||..   +..+-+++.+.  -+.+
T Consensus        99 e~i~~v~ptvlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~--G~ai  162 (279)
T cd05312          99 EVVKAVKPTVLIGLSGVG---GA-----------FTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD--GRAL  162 (279)
T ss_pred             HHHHhcCCCEEEEeCCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhc--CCEE
Confidence            6788  899988775433   21           12456778888899999999999974   55666767652  1358


Q ss_pred             eeecCCccHH
Q 018760          176 IGSGTNLDSS  185 (350)
Q Consensus       176 iG~g~~ld~~  185 (350)
                      |++|+-.+..
T Consensus       163 ~ATGsPf~pv  172 (279)
T cd05312         163 FASGSPFPPV  172 (279)
T ss_pred             EEeCCCCCCe
Confidence            8998765543

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.10  E-value=0.003  Score=62.92  Aligned_cols=109  Identities=17%  Similarity=0.259  Sum_probs=69.0

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      .+..+|+|||+|.+|..++..|...|. .+|+++|++++++...+..+.        ..+....+. +.+.++|+||.+.
T Consensus       180 ~~~~~vlViGaG~iG~~~a~~L~~~G~-~~V~v~~r~~~ra~~la~~~g--------~~~~~~~~~~~~l~~aDvVI~aT  250 (423)
T PRK00045        180 LSGKKVLVIGAGEMGELVAKHLAEKGV-RKITVANRTLERAEELAEEFG--------GEAIPLDELPEALAEADIVISST  250 (423)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHCCC-CeEEEEeCCHHHHHHHHHHcC--------CcEeeHHHHHHHhccCCEEEECC
Confidence            345799999999999999998887774 589999999877654332221        122212233 5688999999997


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHH
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYV  163 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~  163 (350)
                      +.+..- .        +...++....  .+.....+++-+++|-|+-..+
T Consensus       251 ~s~~~~-i--------~~~~l~~~~~--~~~~~~~vviDla~Prdid~~v  289 (423)
T PRK00045        251 GAPHPI-I--------GKGMVERALK--ARRHRPLLLVDLAVPRDIEPEV  289 (423)
T ss_pred             CCCCcE-E--------cHHHHHHHHh--hccCCCeEEEEeCCCCCCcccc
Confidence            655311 1        1122222110  1113457899999998885433

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.10  E-value=0.0023  Score=61.08  Aligned_cols=74  Identities=14%  Similarity=0.162  Sum_probs=53.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ...+|+|||+|.+|...+..++...-+.+|.++++++++++..+.++.+.     ...+....+. +++++||+|+.+..
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~-----g~~~~~~~~~~~av~~aDIVi~aT~  198 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQ-----GFDAEVVTDLEAAVRQADIISCATL  198 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhc-----CCceEEeCCHHHHHhcCCEEEEeeC
Confidence            45689999999999999876665322479999999999888766666532     1123334455 57899999977754

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.09  E-value=0.0076  Score=52.11  Aligned_cols=90  Identities=27%  Similarity=0.380  Sum_probs=64.0

Q ss_pred             EEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCCEEEEe
Q 018760           40 ISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSDLCIVT  112 (350)
Q Consensus        40 I~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aDiVIi~  112 (350)
                      |+|+|| |.+|..++..|++++  .+|+++-+++++++.        .   ...++...  .|   . ++++++|.||.+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~--~~V~~~~R~~~~~~~--------~---~~~~~~~~d~~d~~~~~~al~~~d~vi~~   67 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRG--HEVTALVRSPSKAED--------S---PGVEIIQGDLFDPDSVKAALKGADAVIHA   67 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT--SEEEEEESSGGGHHH--------C---TTEEEEESCTTCHHHHHHHHTTSSEEEEC
T ss_pred             eEEECCCChHHHHHHHHHHHCC--CEEEEEecCchhccc--------c---cccccceeeehhhhhhhhhhhhcchhhhh
Confidence            789999 999999999999999  499999999987653        1   23344432  12   2 468899999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ++.+.+           .....+.+.+.+++....- ++.+|
T Consensus        68 ~~~~~~-----------~~~~~~~~~~a~~~~~~~~-~v~~s   97 (183)
T PF13460_consen   68 AGPPPK-----------DVDAAKNIIEAAKKAGVKR-VVYLS   97 (183)
T ss_dssp             CHSTTT-----------HHHHHHHHHHHHHHTTSSE-EEEEE
T ss_pred             hhhhcc-----------ccccccccccccccccccc-ceeee
Confidence            865543           1566677777777765443 44443

...

>PRK08605 D-lactate dehydrogenase; Validated

Probab=97.06  E-value=0.0025  Score=61.37  Aligned_cols=114  Identities=17%  Similarity=0.244  Sum_probs=66.4

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      -..+||+|||+|.+|+.+|..|+. ++.-+|+.+|.+....      ....        +....+. +.+++||+|+++.
T Consensus       144 l~g~~VgIIG~G~IG~~vA~~L~~-~~g~~V~~~d~~~~~~------~~~~--------~~~~~~l~ell~~aDvIvl~l  208 (332)
T PRK08605        144 IKDLKVAVIGTGRIGLAVAKIFAK-GYGSDVVAYDPFPNAK------AATY--------VDYKDTIEEAVEGADIVTLHM  208 (332)
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHh-cCCCEEEEECCCccHh------HHhh--------ccccCCHHHHHHhCCEEEEeC
Confidence            356799999999999999998853 3334899999876422      1110        1123355 5689999999996


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                      ....   .++ .++  |.    +   .+....|++++|+++--.-+-+..+.+.  +...++-|.
T Consensus       209 P~t~---~t~-~li--~~----~---~l~~mk~gailIN~sRG~~vd~~aL~~a--L~~g~i~ga  258 (332)
T PRK08605        209 PATK---YNH-YLF--NA----D---LFKHFKKGAVFVNCARGSLVDTKALLDA--LDNGLIKGA  258 (332)
T ss_pred             CCCc---chh-hhc--CH----H---HHhcCCCCcEEEECCCCcccCHHHHHHH--HHhCCeeEE
Confidence            4321   111 111  11    1   2233357889999975433333333322  233466555

>PLN00203 glutamyl-tRNA reductase

Probab=97.05  E-value=0.0027  Score=64.59  Aligned_cols=109  Identities=11%  Similarity=0.203  Sum_probs=66.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAGA  115 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g~  115 (350)
                      ..||+|||+|.||..++..|...|. .+|++++++.++++.....+..     ....+....+. +++.+||+||.+.+.
T Consensus       266 ~kkVlVIGAG~mG~~~a~~L~~~G~-~~V~V~nRs~era~~La~~~~g-----~~i~~~~~~dl~~al~~aDVVIsAT~s  339 (519)
T PLN00203        266 SARVLVIGAGKMGKLLVKHLVSKGC-TKMVVVNRSEERVAALREEFPD-----VEIIYKPLDEMLACAAEADVVFTSTSS  339 (519)
T ss_pred             CCEEEEEeCHHHHHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHhCC-----CceEeecHhhHHHHHhcCCEEEEccCC
Confidence            4699999999999999999988875 5899999998877643332210     11122222343 568999999998654


Q ss_pred             CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchH
Q 018760          116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDIL  160 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~  160 (350)
                      +. |=.        ..+.++.+.+.-.+....-++|-++.|-|+=
T Consensus       340 ~~-pvI--------~~e~l~~~~~~~~~~~~~~~~IDLAvPRdId  375 (519)
T PLN00203        340 ET-PLF--------LKEHVEALPPASDTVGGKRLFVDISVPRNVG  375 (519)
T ss_pred             CC-Cee--------CHHHHHHhhhcccccCCCeEEEEeCCCCCCc
Confidence            42 111        1112222211100111224788899998774

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=97.04  E-value=0.0051  Score=57.82  Aligned_cols=119  Identities=16%  Similarity=0.290  Sum_probs=72.5

Q ss_pred             EEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEE---EcCC---c----cccC--CC
Q 018760           40 ISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKIL---ASVD---Y----AVTA--GS  106 (350)
Q Consensus        40 I~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~---~t~~---~----~al~--~a  106 (350)
                      |.|.|| |++|+.++..|+..++ .+|+++|+++.++.....++...... ...+..   .-.|   .    +.++  +.
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~-~~v~~~~~~vigDvrd~~~l~~~~~~~~p   78 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPD-PKVRFEIVPVIGDVRDKERLNRIFEEYKP   78 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC---TTCEEEEE--CTSCCHHHHHHHHTT--T-
T ss_pred             CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccc-cCcccccCceeecccCHHHHHHHHhhcCC
Confidence            679998 9999999999999986 68999999998887666666433211 112111   1112   1    3456  89


Q ss_pred             CEEEEecCCCcCcc--ccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc----CCcchH
Q 018760          107 DLCIVTAGARQIAG--ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA----NPVDIL  160 (350)
Q Consensus       107 DiVIi~~g~~~~~g--~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t----NP~~~~  160 (350)
                      |+|+-++..-.-|-  ....+.+..|+-=-+.+++...+++-+-+|.+-|    ||.++|
T Consensus        79 diVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~Ptnvm  138 (293)
T PF02719_consen   79 DIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNVM  138 (293)
T ss_dssp             SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SHH
T ss_pred             CEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcHH
Confidence            99999975432221  2345667778888888888888887777666654    666664

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=97.03  E-value=0.0029  Score=57.56  Aligned_cols=35  Identities=26%  Similarity=0.544  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      +..||+|+|+|.+|+.++..|+..|+ .+++|+|-+
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gv-g~i~lvD~D   54 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGV-GKLGLVDDD   54 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCC
Confidence            35699999999999999999999996 699999864

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PLN02650 dihydroflavonol-4-reductase

Probab=97.02  E-value=0.005  Score=59.30  Aligned_cols=118  Identities=9%  Similarity=0.158  Sum_probs=70.9

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCC
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGS  106 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~a  106 (350)
                      ....++|.|+|| |.+|++++..|+..|.  +|++++++.+.+.... ++...........+...  ++   . +.++++
T Consensus         2 ~~~~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~   78 (351)
T PLN02650          2 GSQKETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVK-HLLDLPGATTRLTLWKADLAVEGSFDDAIRGC   78 (351)
T ss_pred             CCCCCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHH-HHHhccCCCCceEEEEecCCChhhHHHHHhCC
Confidence            345669999998 9999999999999985  8998888876554322 22111000011121111  12   2 347789


Q ss_pred             CEEEEecCCCcCcccc-HHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          107 DLCIVTAGARQIAGES-RLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       107 DiVIi~~g~~~~~g~~-r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |+||.+++........ ..+.+..|+.-...+.+.+.+...-..+|.+|
T Consensus        79 d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~S  127 (351)
T PLN02650         79 TGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTS  127 (351)
T ss_pred             CEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEec
Confidence            9999998643211111 23456668888888888877754223455554

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.01  E-value=0.0028  Score=60.27  Aligned_cols=73  Identities=15%  Similarity=0.087  Sum_probs=54.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ...+|+|||+|.+|...+..++......+|.++|+++++++..+..+...     ...+. ..+. +++.+||+||.+..
T Consensus       124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~-----~~~~~-~~~~~~av~~aDiVitaT~  197 (304)
T PRK07340        124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL-----GPTAE-PLDGEAIPEAVDLVVTATT  197 (304)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-----CCeeE-ECCHHHHhhcCCEEEEccC
Confidence            45699999999999999988876333479999999999888766666532     12333 3344 57999999999864

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.01  E-value=0.0059  Score=57.61  Aligned_cols=104  Identities=20%  Similarity=0.183  Sum_probs=66.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      +....+|+|+|+|.+|..++..|...|.  +|+++|+++++++.    ... .    ........+. +.++++|+||++
T Consensus       148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~--~V~v~~R~~~~~~~----~~~-~----g~~~~~~~~l~~~l~~aDiVint  216 (287)
T TIGR02853       148 TIHGSNVMVLGFGRTGMTIARTFSALGA--RVFVGARSSADLAR----ITE-M----GLIPFPLNKLEEKVAEIDIVINT  216 (287)
T ss_pred             CCCCCEEEEEcChHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH----HHH-C----CCeeecHHHHHHHhccCCEEEEC
Confidence            3445799999999999999999998885  89999998765432    111 1    1111112233 468899999998


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEE-cCCcchHHHHHHH
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV-ANPVDILTYVAWK  166 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~-tNP~~~~~~~~~~  166 (350)
                      .+..         ++  +    .   ..+....|++++|++ ++|-.+--..+.+
T Consensus       217 ~P~~---------ii--~----~---~~l~~~k~~aliIDlas~Pg~tdf~~Ak~  253 (287)
T TIGR02853       217 IPAL---------VL--T----A---DVLSKLPKHAVIIDLASKPGGTDFEYAKK  253 (287)
T ss_pred             CChH---------Hh--C----H---HHHhcCCCCeEEEEeCcCCCCCCHHHHHH
Confidence            6321         11  1    1   123334578888877 5887763344433

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=96.98  E-value=0.0043  Score=57.14  Aligned_cols=125  Identities=19%  Similarity=0.351  Sum_probs=77.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhc----CCC-----CeEEEEeCCc----c--chHHHHHHHHHHhhcCCCceEEEcCCc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQ----DFV-----EELALVDAKA----D--KLRGEMLDLQHAAAFLPRTKILASVDY  100 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~----~~~-----~ev~L~D~~~----~--~l~~~~~dl~~~~~~~~~~~v~~t~~~  100 (350)
                      +..||.++|||+.|..++.+|...    |+-     ++++|+|.+-    +  .+......+.+..   ......  .++
T Consensus        24 ~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~---~~~~~~--~~L   98 (255)
T PF03949_consen   24 SDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKT---NPEKDW--GSL   98 (255)
T ss_dssp             GG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSS---STTT----SSH
T ss_pred             HHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccC---cccccc--cCH
Confidence            346999999999999999888876    774     6899999853    2  2221222222211   111111  355


Q ss_pred             -cccCCC--CEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc---hHHHHHHHHhCCCCCc
Q 018760          101 -AVTAGS--DLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD---ILTYVAWKLSGLPSNR  174 (350)
Q Consensus       101 -~al~~a--DiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~---~~~~~~~~~sg~~~~r  174 (350)
                       ++++++  |++|=+.+.+   |.           +-+++.+.|.+++++.+|+-.|||..   +..+-+++.+.   .|
T Consensus        99 ~eav~~~kPtvLIG~S~~~---g~-----------ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t~---g~  161 (255)
T PF03949_consen   99 LEAVKGAKPTVLIGLSGQG---GA-----------FTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWTD---GR  161 (255)
T ss_dssp             HHHHHCH--SEEEECSSST---TS-----------S-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTTT---SE
T ss_pred             HHHHHhcCCCEEEEecCCC---Cc-----------CCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhCC---ce
Confidence             789999  9988876543   21           22567788889999999999999976   44555666552   34


Q ss_pred             -EeeecCCc
Q 018760          175 -VIGSGTNL  182 (350)
Q Consensus       175 -viG~g~~l  182 (350)
                       +|++|+-.
T Consensus       162 ai~AtGSpf  170 (255)
T PF03949_consen  162 AIFATGSPF  170 (255)
T ss_dssp             EEEEESS--
T ss_pred             EEEecCCcc
Confidence             46776543

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=96.96  E-value=0.0024  Score=60.19  Aligned_cols=60  Identities=23%  Similarity=0.324  Sum_probs=45.5

Q ss_pred             EEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           42 VIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        42 IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      |||+|.||.+++..|+..+.  +|+++|+++++++.    +...     ...  .+.+. +++++||+||++..
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~--~V~v~dr~~~~~~~----l~~~-----g~~--~~~s~~~~~~~advVil~vp   61 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGH--PVRVFDLFPDAVEE----AVAA-----GAQ--AAASPAEAAEGADRVITMLP   61 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCC--eEEEEeCCHHHHHH----HHHc-----CCe--ecCCHHHHHhcCCEEEEeCC
Confidence            58999999999999999985  89999999876653    3221     112  23344 57899999999974

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.96  E-value=0.003  Score=60.94  Aligned_cols=74  Identities=20%  Similarity=0.350  Sum_probs=51.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc---------------------cchHHHHHHHHHHhhcCCCceE
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA---------------------DKLRGEMLDLQHAAAFLPRTKI   94 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~---------------------~~l~~~~~dl~~~~~~~~~~~v   94 (350)
                      +..||+|||+|.+|+.++..|+..|+ .+|+|+|.|.                     .|++.....+....   +..++
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGv-g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in---p~v~i   98 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGI-GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN---SEVEI   98 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC---CCcEE
Confidence            34689999999999999999999996 6999999874                     13333333444332   34444


Q ss_pred             EEcC------Cc-cccCCCCEEEEec
Q 018760           95 LASV------DY-AVTAGSDLCIVTA  113 (350)
Q Consensus        95 ~~t~------~~-~al~~aDiVIi~~  113 (350)
                      ..-.      +. +.++++|+||.+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~DlVid~~  124 (338)
T PRK12475         99 VPVVTDVTVEELEELVKEVDLIIDAT  124 (338)
T ss_pred             EEEeccCCHHHHHHHhcCCCEEEEcC
Confidence            3321      12 3478999999985

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.96  E-value=0.0024  Score=63.49  Aligned_cols=107  Identities=18%  Similarity=0.250  Sum_probs=67.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      +..+|+|+|+|.+|..++..|...|. .+|+++|++.++++..+..+.        .......+. +.+.++|+||.+.+
T Consensus       179 ~~~~VlViGaG~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~~la~~~g--------~~~i~~~~l~~~l~~aDvVi~aT~  249 (417)
T TIGR01035       179 KGKKALLIGAGEMGELVAKHLLRKGV-GKILIANRTYERAEDLAKELG--------GEAVKFEDLEEYLAEADIVISSTG  249 (417)
T ss_pred             cCCEEEEECChHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcC--------CeEeeHHHHHHHHhhCCEEEECCC
Confidence            44699999999999999999988774 589999999877654332221        111112233 56889999999976


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHH
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYV  163 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~  163 (350)
                      .+. +-.        +...++..   +..-....+++-+++|-|+-..+
T Consensus       250 s~~-~ii--------~~e~l~~~---~~~~~~~~~viDla~Prdid~~v  286 (417)
T TIGR01035       250 APH-PIV--------SKEDVERA---LRERTRPLFIIDIAVPRDVDPAV  286 (417)
T ss_pred             CCC-ceE--------cHHHHHHH---HhcCCCCeEEEEeCCCCCCChhh
Confidence            543 111        11122211   11111346888999998885433

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK07574 formate dehydrogenase; Provisional

Probab=96.96  E-value=0.0054  Score=60.15  Aligned_cols=117  Identities=15%  Similarity=0.229  Sum_probs=69.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      ....++|+|||.|++|+.+|..|..-|.  +|+.+|+.....+     .....      .+....+. +.++.||+|+++
T Consensus       189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~-----~~~~~------g~~~~~~l~ell~~aDvV~l~  255 (385)
T PRK07574        189 DLEGMTVGIVGAGRIGLAVLRRLKPFDV--KLHYTDRHRLPEE-----VEQEL------GLTYHVSFDSLVSVCDVVTIH  255 (385)
T ss_pred             ecCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEECCCCCchh-----hHhhc------CceecCCHHHHhhcCCEEEEc
Confidence            3456799999999999999999988776  8999998753221     11111      12222345 568999999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                      .....   ++ ..++  |       .+.+....|.+++||++--.=+-...+.+.  +...++-|.
T Consensus       256 lPlt~---~T-~~li--~-------~~~l~~mk~ga~lIN~aRG~iVDe~AL~~A--L~sG~i~GA  306 (385)
T PRK07574        256 CPLHP---ET-EHLF--D-------ADVLSRMKRGSYLVNTARGKIVDRDAVVRA--LESGHLAGY  306 (385)
T ss_pred             CCCCH---HH-HHHh--C-------HHHHhcCCCCcEEEECCCCchhhHHHHHHH--HHhCCccEE
Confidence            64221   11 1111  2       233344468899999974332323333332  233466555

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=96.95  E-value=0.0057  Score=58.20  Aligned_cols=118  Identities=15%  Similarity=0.206  Sum_probs=76.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHH--HHHHHHHHhhcCCCceEEEc-----CCc-cccCCC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRG--EMLDLQHAAAFLPRTKILAS-----VDY-AVTAGS  106 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~--~~~dl~~~~~~~~~~~v~~t-----~~~-~al~~a  106 (350)
                      ..++|+|.|| |.+|+.++..|+++|+  .|+-.=++++..+.  ...+|....   .+.++...     ..+ +++++|
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~---~~l~l~~aDL~d~~sf~~ai~gc   79 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAK---ERLKLFKADLLDEGSFDKAIDGC   79 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCc---ccceEEeccccccchHHHHHhCC
Confidence            5679999999 9999999999999997  78877777765332  233343222   12233321     123 579999


Q ss_pred             CEEEEecCCC-cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch
Q 018760          107 DLCIVTAGAR-QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI  159 (350)
Q Consensus       107 DiVIi~~g~~-~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~  159 (350)
                      |.|+-++... ........+++.-.++-...+.+.+.+.. .-.-+++|.-...
T Consensus        80 dgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~aA  132 (327)
T KOG1502|consen   80 DGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSSTAA  132 (327)
T ss_pred             CEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccHHH
Confidence            9999987422 11111344667667777888888888876 4445666655433

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=96.94  E-value=0.0037  Score=59.75  Aligned_cols=112  Identities=13%  Similarity=0.208  Sum_probs=70.6

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccCCCCEE
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAGSDLC  109 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~aDiV  109 (350)
                      .++|.|+|| |.+|++++..|+..+...+|+++|++..+......++..     ....+...  +|.    ++++++|+|
T Consensus         4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~-----~~~~~v~~Dl~d~~~l~~~~~~iD~V   78 (324)
T TIGR03589         4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA-----PCLRFFIGDVRDKERLTRALRGVDYV   78 (324)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC-----CcEEEEEccCCCHHHHHHHHhcCCEE
Confidence            468999998 999999999999876334899999876543321111110     11222211  122    346789999


Q ss_pred             EEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          110 IVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       110 Ii~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |.+++....+  ..+..+.+..|+.-...+.+.+.+.+.. .+|.+|
T Consensus        79 ih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~S  124 (324)
T TIGR03589        79 VHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALS  124 (324)
T ss_pred             EECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            9998753222  2234566777888888888888876433 355554

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=96.94  E-value=0.0022  Score=61.21  Aligned_cols=73  Identities=12%  Similarity=0.187  Sum_probs=50.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ..+++|||+|..+..-+..++.--.+.+|.++|+++++++..+.++++ .    ...+....+. +++++||+|+.+..
T Consensus       128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~----~~~v~~~~~~~~av~~aDii~taT~  201 (313)
T PF02423_consen  128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-L----GVPVVAVDSAEEAVRGADIIVTATP  201 (313)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-C----CTCEEEESSHHHHHTTSSEEEE---
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-c----cccceeccchhhhcccCCEEEEccC
Confidence            358999999999988887776644478999999999988877777776 2    3456666676 68999999998743

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PLN02712 arogenate dehydrogenase

Probab=96.92  E-value=0.008  Score=63.17  Aligned_cols=103  Identities=13%  Similarity=0.162  Sum_probs=62.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-cC-CCCEEEEec
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-TA-GSDLCIVTA  113 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l~-~aDiVIi~~  113 (350)
                      +++||+|||+|.||..++..|...|.  +|+.+|++.+. +    .... .    ...  ..++.++ +. ++|+||+++
T Consensus       368 ~~~kIgIIGlG~mG~slA~~L~~~G~--~V~~~dr~~~~-~----~a~~-~----Gv~--~~~~~~el~~~~aDvVILav  433 (667)
T PLN02712        368 SKLKIAIVGFGNFGQFLAKTMVKQGH--TVLAYSRSDYS-D----EAQK-L----GVS--YFSDADDLCEEHPEVILLCT  433 (667)
T ss_pred             CCCEEEEEecCHHHHHHHHHHHHCcC--EEEEEECChHH-H----HHHH-c----CCe--EeCCHHHHHhcCCCEEEECC
Confidence            56899999999999999999998874  89999998531 1    1111 1    112  2345543 44 589999996


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHH
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWK  166 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~  166 (350)
                      ...            .+.+++.++...  ...|+++++.++..-......+.+
T Consensus       434 P~~------------~~~~vi~~l~~~--~lk~g~ivvDv~SvK~~~~~~~~~  472 (667)
T PLN02712        434 SIL------------STEKVLKSLPFQ--RLKRSTLFVDVLSVKEFPRNLFLQ  472 (667)
T ss_pred             ChH------------HHHHHHHHHHHh--cCCCCcEEEECCCccHHHHHHHHH
Confidence            311            123334433210  134677777775443333344433

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.91  E-value=0.0044  Score=59.73  Aligned_cols=115  Identities=17%  Similarity=0.188  Sum_probs=69.1

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      -..++|+|||.|.+|+.+|..+...|.  +|..+|++.....      ....    ...  . .+. +.+++||+|+++.
T Consensus       148 L~gktvgIiG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~------~~~~----~~~--~-~~l~ell~~aDiV~l~l  212 (333)
T PRK13243        148 VYGKTIGIIGFGRIGQAVARRAKGFGM--RILYYSRTRKPEA------EKEL----GAE--Y-RPLEELLRESDFVSLHV  212 (333)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC--EEEEECCCCChhh------HHHc----CCE--e-cCHHHHHhhCCEEEEeC
Confidence            456799999999999999999988886  8999999764211      1111    111  1 245 5689999999996


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeec
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSG  179 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g  179 (350)
                      ....   +        +..++.  .+.+....|++++||++--.-+-...+.+.  +...++-|.+
T Consensus       213 P~t~---~--------T~~~i~--~~~~~~mk~ga~lIN~aRg~~vd~~aL~~a--L~~g~i~gAa  263 (333)
T PRK13243        213 PLTK---E--------TYHMIN--EERLKLMKPTAILVNTARGKVVDTKALVKA--LKEGWIAGAG  263 (333)
T ss_pred             CCCh---H--------HhhccC--HHHHhcCCCCeEEEECcCchhcCHHHHHHH--HHcCCeEEEE
Confidence            4221   1        111111  123344468899999974322223333332  2334776553

>PRK14982 acyl-ACP reductase; Provisional

Probab=96.89  E-value=0.0054  Score=59.08  Aligned_cols=97  Identities=21%  Similarity=0.326  Sum_probs=64.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      +.++|.|+|| |.+|+.++..|+...-..+|++++++++++.....++..       .++.   +. +++.++|+||.++
T Consensus       154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~-------~~i~---~l~~~l~~aDiVv~~t  223 (340)
T PRK14982        154 SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGG-------GKIL---SLEEALPEADIVVWVA  223 (340)
T ss_pred             CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcc-------ccHH---hHHHHHccCCEEEECC
Confidence            4468999999 999999999998653246899999998877654433321       1111   33 5789999999998


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchH
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDIL  160 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~  160 (350)
                      +.+...-.+..++                  .+..+++-++.|=|+-
T Consensus       224 s~~~~~~I~~~~l------------------~~~~~viDiAvPRDVd  252 (340)
T PRK14982        224 SMPKGVEIDPETL------------------KKPCLMIDGGYPKNLD  252 (340)
T ss_pred             cCCcCCcCCHHHh------------------CCCeEEEEecCCCCCC
Confidence            7654211111110                  3557777888887774

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.88  E-value=0.0081  Score=53.67  Aligned_cols=130  Identities=13%  Similarity=0.218  Sum_probs=71.7

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcC-CccccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV-DYAVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~-~~~al~~aDiVIi~~  113 (350)
                      .+..||.|||+|.||...+..|+..+.  +|++++.+..  + ...++.+..    ........ ..+.+.++|+||.+.
T Consensus         8 l~~k~vLVIGgG~va~~ka~~Ll~~ga--~V~VIs~~~~--~-~l~~l~~~~----~i~~~~~~~~~~~l~~adlViaaT   78 (202)
T PRK06718          8 LSNKRVVIVGGGKVAGRRAITLLKYGA--HIVVISPELT--E-NLVKLVEEG----KIRWKQKEFEPSDIVDAFLVIAAT   78 (202)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEcCCCC--H-HHHHHHhCC----CEEEEecCCChhhcCCceEEEEcC
Confidence            345799999999999999999999884  8999976431  1 112222211    12222111 124689999999885


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc--chHHHHHHHHhCCCCCcEeeecCCccHHHHHHHH
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV--DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLL  191 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~--~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~l  191 (350)
                      +.+.           -|..+... ++   +   ..++-++.+|-  |...+...+..+    =.|++.|.--+-++.+.+
T Consensus        79 ~d~e-----------lN~~i~~~-a~---~---~~lvn~~d~~~~~~f~~Pa~~~~g~----l~iaIsT~G~sP~la~~l  136 (202)
T PRK06718         79 NDPR-----------VNEQVKED-LP---E---NALFNVITDAESGNVVFPSALHRGK----LTISVSTDGASPKLAKKI  136 (202)
T ss_pred             CCHH-----------HHHHHHHH-HH---h---CCcEEECCCCccCeEEEeeEEEcCC----eEEEEECCCCChHHHHHH
Confidence            4321           24333222 21   1   23344445664  334444333222    356776665555555555


Q ss_pred             HHHc
Q 018760          192 ADHL  195 (350)
Q Consensus       192 a~~l  195 (350)
                      .+++
T Consensus       137 r~~i  140 (202)
T PRK06718        137 RDEL  140 (202)
T ss_pred             HHHH
Confidence            5544

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.88  E-value=0.0031  Score=59.99  Aligned_cols=102  Identities=16%  Similarity=0.147  Sum_probs=63.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCCEEE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSDLCI  110 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aDiVI  110 (350)
                      |||.|+|| |.+|+.++..|++.|.  +|+.++++.++..    .+...     ..++...  +|   . ++++++|+||
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~~----~l~~~-----~v~~v~~Dl~d~~~l~~al~g~d~Vi   69 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKAS----FLKEW-----GAELVYGDLSLPETLPPSFKGVTAII   69 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHhh----hHhhc-----CCEEEECCCCCHHHHHHHHCCCCEEE
Confidence            69999998 9999999999999985  8999999865432    12211     1222211  12   2 4689999999


Q ss_pred             EecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          111 VTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       111 i~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      .+++....   ...++...|..-...+.+.+++.+-+- +|.+|
T Consensus        70 ~~~~~~~~---~~~~~~~~~~~~~~~l~~aa~~~gvkr-~I~~S  109 (317)
T CHL00194         70 DASTSRPS---DLYNAKQIDWDGKLALIEAAKAAKIKR-FIFFS  109 (317)
T ss_pred             ECCCCCCC---CccchhhhhHHHHHHHHHHHHHcCCCE-EEEec
Confidence            98653211   111223345555666777777665443 44444

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.88  E-value=0.0045  Score=53.04  Aligned_cols=67  Identities=9%  Similarity=0.163  Sum_probs=45.5

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc--cccCCCCEEEEe
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY--AVTAGSDLCIVT  112 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~--~al~~aDiVIi~  112 (350)
                      -+..||.|||+|.+|...+..|+..+.  +|++++  ++..+    ++.+..    ...+. ...+  ++++++|+||.+
T Consensus        11 l~~~~vlVvGGG~va~rka~~Ll~~ga--~V~VIs--p~~~~----~l~~l~----~i~~~-~~~~~~~dl~~a~lViaa   77 (157)
T PRK06719         11 LHNKVVVIIGGGKIAYRKASGLKDTGA--FVTVVS--PEICK----EMKELP----YITWK-QKTFSNDDIKDAHLIYAA   77 (157)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEc--CccCH----HHHhcc----CcEEE-ecccChhcCCCceEEEEC
Confidence            355799999999999999999999885  899996  33332    222211    11222 1223  469999999998


Q ss_pred             cC
Q 018760          113 AG  114 (350)
Q Consensus       113 ~g  114 (350)
                      .+
T Consensus        78 T~   79 (157)
T PRK06719         78 TN   79 (157)
T ss_pred             CC
Confidence            53

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.87  E-value=0.004  Score=61.23  Aligned_cols=73  Identities=18%  Similarity=0.346  Sum_probs=56.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      +..|+.|||||-||.-++..|...++ .+|++..++.+++...+..+.        .++..-++. +.+.++|+||.+.+
T Consensus       177 ~~~~vlvIGAGem~~lva~~L~~~g~-~~i~IaNRT~erA~~La~~~~--------~~~~~l~el~~~l~~~DvVissTs  247 (414)
T COG0373         177 KDKKVLVIGAGEMGELVAKHLAEKGV-KKITIANRTLERAEELAKKLG--------AEAVALEELLEALAEADVVISSTS  247 (414)
T ss_pred             ccCeEEEEcccHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHhC--------CeeecHHHHHHhhhhCCEEEEecC
Confidence            44689999999999999999999997 699999999988875554444        123322343 67999999999977


Q ss_pred             CCc
Q 018760          115 ARQ  117 (350)
Q Consensus       115 ~~~  117 (350)
                      .|.
T Consensus       248 a~~  250 (414)
T COG0373         248 APH  250 (414)
T ss_pred             CCc
Confidence            653

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=96.86  E-value=0.014  Score=59.11  Aligned_cols=122  Identities=17%  Similarity=0.247  Sum_probs=85.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccCC--CC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAG--SD  107 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~--aD  107 (350)
                      .++|.|.|| |++|+.++..++..+. .+|+++|.+|-++..+..++.+..+. ...+....  .|+    .++++  .|
T Consensus       250 gK~vLVTGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~~~-~~~~~~igdVrD~~~~~~~~~~~kvd  327 (588)
T COG1086         250 GKTVLVTGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKFPE-LKLRFYIGDVRDRDRVERAMEGHKVD  327 (588)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhCCC-cceEEEecccccHHHHHHHHhcCCCc
Confidence            468999999 9999999999999876 69999999998888777777765321 11121111  232    45777  99


Q ss_pred             EEEEecCCCcCccc--cHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc----CCcchH
Q 018760          108 LCIVTAGARQIAGE--SRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA----NPVDIL  160 (350)
Q Consensus       108 iVIi~~g~~~~~g~--~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t----NP~~~~  160 (350)
                      +|+-+|..-.-|-.  .-.+-...|+-=-+.+++...+..=+.++++-|    ||.++|
T Consensus       328 ~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvm  386 (588)
T COG1086         328 IVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVM  386 (588)
T ss_pred             eEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHh
Confidence            99999864433322  245556777777778888888777666666554    676664

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.85  E-value=0.0061  Score=56.09  Aligned_cols=128  Identities=17%  Similarity=0.257  Sum_probs=83.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCC---------CeEEEEeCCc----cc--hHHHHHHHHHHhhcCCCceEEEcCCc-
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFV---------EELALVDAKA----DK--LRGEMLDLQHAAAFLPRTKILASVDY-  100 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~---------~ev~L~D~~~----~~--l~~~~~dl~~~~~~~~~~~v~~t~~~-  100 (350)
                      ..||+|.|||+.|..++.+|.....-         ++++++|..-    ++  +......+.+   |....+-  ..++ 
T Consensus        25 d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~---~~~~~~~--~~~L~   99 (254)
T cd00762          25 EHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLAR---FANPERE--SGDLE   99 (254)
T ss_pred             hcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHH---HcCcccc--cCCHH
Confidence            46999999999999999887765421         3899999853    22  2111112111   2111111  2355 


Q ss_pred             cccC--CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc---hHHHHHHHHhCCCCCcE
Q 018760          101 AVTA--GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD---ILTYVAWKLSGLPSNRV  175 (350)
Q Consensus       101 ~al~--~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~---~~~~~~~~~sg~~~~rv  175 (350)
                      ++++  ++|++|=+.+.+   |-           +-+++.+.|.++|++.+|+-.|||..   +..+-+++.+.  -+.+
T Consensus       100 eav~~~kptvlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~--G~ai  163 (254)
T cd00762         100 DAVEAAKPDFLIGVSRVG---GA-----------FTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATE--GRAI  163 (254)
T ss_pred             HHHHhhCCCEEEEeCCCC---CC-----------CCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcC--CCEE
Confidence            6788  999988776533   21           12456778888899999999999985   56667777762  2478


Q ss_pred             eeecCCccHH
Q 018760          176 IGSGTNLDSS  185 (350)
Q Consensus       176 iG~g~~ld~~  185 (350)
                      |++|..-+..
T Consensus       164 ~AtGspf~pv  173 (254)
T cd00762         164 FASGSPFHPV  173 (254)
T ss_pred             EEECCCCCCc
Confidence            9998866544

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.85  E-value=0.0038  Score=55.70  Aligned_cols=87  Identities=14%  Similarity=0.215  Sum_probs=54.4

Q ss_pred             ccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCce
Q 018760           14 GLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTK   93 (350)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~   93 (350)
                      |.|...+...-++..-. ....+.++|+|+|.|+||+.++..|...|.  +|+.+|+++++++.....+        ..+
T Consensus         6 g~Gv~~~~~~~~~~~~~-~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~--~Vvv~D~~~~~~~~~~~~~--------g~~   74 (200)
T cd01075           6 AYGVFLGMKAAAEHLLG-TDSLEGKTVAVQGLGKVGYKLAEHLLEEGA--KLIVADINEEAVARAAELF--------GAT   74 (200)
T ss_pred             HHHHHHHHHHHHHHhcC-CCCCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHc--------CCE
Confidence            44444444444444300 113355789999999999999999999985  9999999987655322211        112


Q ss_pred             EEEcCCcccc-CCCCEEEEec
Q 018760           94 ILASVDYAVT-AGSDLCIVTA  113 (350)
Q Consensus        94 v~~t~~~~al-~~aDiVIi~~  113 (350)
                      .. + ..+.+ .+||+++.++
T Consensus        75 ~v-~-~~~l~~~~~Dv~vp~A   93 (200)
T cd01075          75 VV-A-PEEIYSVDADVFAPCA   93 (200)
T ss_pred             EE-c-chhhccccCCEEEecc
Confidence            22 1 12222 3799999775

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.84  E-value=0.0053  Score=59.31  Aligned_cols=36  Identities=25%  Similarity=0.502  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      +..||.|||+|.+|+.++..|+..|+ .+|.|+|.|.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGv-g~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGV-GKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence            35689999999999999999999997 6999999873

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.83  E-value=0.011  Score=51.61  Aligned_cols=115  Identities=19%  Similarity=0.224  Sum_probs=68.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      .....+|+|||.|.+|+.+|..+..-|.  +|+.+|+......    ...+.       .+.. .+. +.++.||+|+++
T Consensus        33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~----~~~~~-------~~~~-~~l~ell~~aDiv~~~   98 (178)
T PF02826_consen   33 ELRGKTVGIIGYGRIGRAVARRLKAFGM--RVIGYDRSPKPEE----GADEF-------GVEY-VSLDELLAQADIVSLH   98 (178)
T ss_dssp             -STTSEEEEESTSHHHHHHHHHHHHTT---EEEEEESSCHHHH----HHHHT-------TEEE-SSHHHHHHH-SEEEE-
T ss_pred             ccCCCEEEEEEEcCCcCeEeeeeecCCc--eeEEecccCChhh----hcccc-------ccee-eehhhhcchhhhhhhh
Confidence            4556799999999999999999998886  9999999875332    11111       1222 255 568999999998


Q ss_pred             cCC-CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          113 AGA-RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       113 ~g~-~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                      ... +...+.-       |.       +.+....+++++||++-..-+-...+.+.  +...++-|.
T Consensus        99 ~plt~~T~~li-------~~-------~~l~~mk~ga~lvN~aRG~~vde~aL~~a--L~~g~i~ga  149 (178)
T PF02826_consen   99 LPLTPETRGLI-------NA-------EFLAKMKPGAVLVNVARGELVDEDALLDA--LESGKIAGA  149 (178)
T ss_dssp             SSSSTTTTTSB-------SH-------HHHHTSTTTEEEEESSSGGGB-HHHHHHH--HHTTSEEEE
T ss_pred             hccccccceee-------ee-------eeeeccccceEEEeccchhhhhhhHHHHH--HhhccCceE
Confidence            642 2222221       11       22334467899999986543333344333  223466554

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK06823 ornithine cyclodeaminase; Validated

Probab=96.83  E-value=0.0062  Score=58.23  Aligned_cols=74  Identities=15%  Similarity=0.100  Sum_probs=56.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ...+++|||+|..+...+..++.-..+.+|.++|+++++++..+..+++.     ..++....+. +++++||+|+.+..
T Consensus       127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~-----~~~v~~~~~~~~av~~ADIV~taT~  201 (315)
T PRK06823        127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL-----GFAVNTTLDAAEVAHAANLIVTTTP  201 (315)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhc-----CCcEEEECCHHHHhcCCCEEEEecC
Confidence            45689999999999988877776655689999999999988666555432     2345545565 67999999998753

>PLN03139 formate dehydrogenase; Provisional

Probab=96.81  E-value=0.0096  Score=58.41  Aligned_cols=118  Identities=14%  Similarity=0.177  Sum_probs=70.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      ....++|+|||.|.||..++..|..-|.  +|+.+|......+     .....      .+....+. +.+++||+|+++
T Consensus       196 ~L~gktVGIVG~G~IG~~vA~~L~afG~--~V~~~d~~~~~~~-----~~~~~------g~~~~~~l~ell~~sDvV~l~  262 (386)
T PLN03139        196 DLEGKTVGTVGAGRIGRLLLQRLKPFNC--NLLYHDRLKMDPE-----LEKET------GAKFEEDLDAMLPKCDVVVIN  262 (386)
T ss_pred             CCCCCEEEEEeecHHHHHHHHHHHHCCC--EEEEECCCCcchh-----hHhhc------CceecCCHHHHHhhCCEEEEe
Confidence            3456799999999999999999987775  8999998753222     11111      12222355 567999999998


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeec
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSG  179 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g  179 (350)
                      ....  + ++ ..++  |       .+.+....|++++||++--.=+-...+.+.  +...++-|.|
T Consensus       263 lPlt--~-~T-~~li--~-------~~~l~~mk~ga~lIN~aRG~iVDe~AL~~A--L~sG~l~GAa  314 (386)
T PLN03139        263 TPLT--E-KT-RGMF--N-------KERIAKMKKGVLIVNNARGAIMDTQAVADA--CSSGHIGGYG  314 (386)
T ss_pred             CCCC--H-HH-HHHh--C-------HHHHhhCCCCeEEEECCCCchhhHHHHHHH--HHcCCceEEE
Confidence            5321  1 11 1112  2       234444578999999974332333333333  2334666653

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=96.80  E-value=0.0044  Score=57.34  Aligned_cols=93  Identities=19%  Similarity=0.174  Sum_probs=62.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCC--CCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc--cCCCCEEEEec
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDF--VEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV--TAGSDLCIVTA  113 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~--~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a--l~~aDiVIi~~  113 (350)
                      +||+|||+|.+|..++..|.....  +.-+.++|+++++.+.    +...      .+  ..++.++  ....|+||.|+
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~----~~~~------~~--~~~~l~~ll~~~~DlVVE~A   70 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPA----LAGR------VA--LLDGLPGLLAWRPDLVVEAA   70 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHH----hhcc------Cc--ccCCHHHHhhcCCCEEEECC
Confidence            699999999999999998876542  2234457776654442    2211      12  2346655  37899999998


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD  158 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~  158 (350)
                      +                ...+++++..+-+.+.|-+++.++==.|
T Consensus        71 ~----------------~~av~e~~~~iL~~g~dlvv~SvGALaD   99 (267)
T PRK13301         71 G----------------QQAIAEHAEGCLTAGLDMIICSAGALAD   99 (267)
T ss_pred             C----------------HHHHHHHHHHHHhcCCCEEEEChhHhcC
Confidence            5                4678889999988777755544443333

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=96.80  E-value=0.0056  Score=58.45  Aligned_cols=64  Identities=16%  Similarity=0.183  Sum_probs=44.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc-cchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEec
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA-DKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTA  113 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~-~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~  113 (350)
                      .+||+|||+|+||.+++..|...+.  ++++.+... ++++    .+.. .    ..++  ++..+++++||+|++++
T Consensus         3 ~kkIgiIG~G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~~----~a~~-~----Gv~~--~s~~ea~~~ADiVvLaV   67 (314)
T TIGR00465         3 GKTVAIIGYGSQGHAQALNLRDSGL--NVIVGLRKGGASWK----KATE-D----GFKV--GTVEEAIPQADLIMNLL   67 (314)
T ss_pred             cCEEEEEeEcHHHHHHHHHHHHCCC--eEEEEECcChhhHH----HHHH-C----CCEE--CCHHHHHhcCCEEEEeC
Confidence            4689999999999999999999886  676655543 3222    1211 1    1222  33336789999999996

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PLN02778 3,5-epimerase/4-reductase

Probab=96.78  E-value=0.029  Score=53.04  Aligned_cols=93  Identities=10%  Similarity=0.093  Sum_probs=60.6

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEe
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~  112 (350)
                      ....|||.|+|| |.+|++++..|+..|.  +|++...+....+....++.                  . .++|+||-+
T Consensus         6 ~~~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~~~~~~~v~~~l~------------------~-~~~D~ViH~   64 (298)
T PLN02778          6 GSATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGRLENRASLEADID------------------A-VKPTHVFNA   64 (298)
T ss_pred             CCCCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCccCCHHHHHHHHH------------------h-cCCCEEEEC
Confidence            344589999998 9999999999999885  77655433222221111111                  1 257999998


Q ss_pred             cCCCcCcc-----ccHHHHHHhhHHHHHHHHhhhhccCCC
Q 018760          113 AGARQIAG-----ESRLNLLQRNLSLFKAIIPPLVKYSPD  147 (350)
Q Consensus       113 ~g~~~~~g-----~~r~~~~~~n~~i~~~i~~~i~~~~p~  147 (350)
                      ++....+.     ....+.+..|+.....+++.+++....
T Consensus        65 Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~  104 (298)
T PLN02778         65 AGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV  104 (298)
T ss_pred             CcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            87543221     234566777888888888888876433

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.78  E-value=0.0081  Score=53.81  Aligned_cols=128  Identities=17%  Similarity=0.206  Sum_probs=72.5

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc--cccCCCCEEEEec
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY--AVTAGSDLCIVTA  113 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~--~al~~aDiVIi~~  113 (350)
                      +..||.|||+|.+|..-+..|+..|.  +|++++.+..  + ...++...    ....+.. .++  +.+.++|+||.+.
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga--~VtVvsp~~~--~-~l~~l~~~----~~i~~~~-~~~~~~dl~~~~lVi~at   77 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGA--QLRVIAEELE--S-ELTLLAEQ----GGITWLA-RCFDADILEGAFLVIAAT   77 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCC--EEEEEcCCCC--H-HHHHHHHc----CCEEEEe-CCCCHHHhCCcEEEEECC
Confidence            34599999999999999999999885  8999987653  1 11223221    1223321 233  5689999999986


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEE-EcCCc--chHHHHHHHHhCCCCCcEeeecCCccHHHHHHH
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLI-VANPV--DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFL  190 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv-~tNP~--~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~  190 (350)
                      +.+.           -|.++....    ++   .++.+| +++|.  +...+...+..+    =.|++.|.--+-++.+.
T Consensus        78 ~d~~-----------ln~~i~~~a----~~---~~ilvn~~d~~e~~~f~~pa~~~~g~----l~iaisT~G~sP~la~~  135 (205)
T TIGR01470        78 DDEE-----------LNRRVAHAA----RA---RGVPVNVVDDPELCSFIFPSIVDRSP----VVVAISSGGAAPVLARL  135 (205)
T ss_pred             CCHH-----------HHHHHHHHH----HH---cCCEEEECCCcccCeEEEeeEEEcCC----EEEEEECCCCCcHHHHH
Confidence            5321           133333222    21   233344 45664  344443333322    34577666555555555


Q ss_pred             HHHHc
Q 018760          191 LADHL  195 (350)
Q Consensus       191 la~~l  195 (350)
                      +.+++
T Consensus       136 lr~~i  140 (205)
T TIGR01470       136 LRERI  140 (205)
T ss_pred             HHHHH
Confidence            55444

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK07589 ornithine cyclodeaminase; Validated

Probab=96.77  E-value=0.0057  Score=59.17  Aligned_cols=74  Identities=18%  Similarity=0.188  Sum_probs=56.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ...+++|||+|..+...+..++.-..+.+|.++++++++++..+.++.+.     ..++....+. +++++||+|+.+..
T Consensus       128 da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~-----~~~v~~~~~~~~av~~ADIIvtaT~  202 (346)
T PRK07589        128 DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP-----GLRIVACRSVAEAVEGADIITTVTA  202 (346)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCHHHHHhcCCEEEEecC
Confidence            34689999999998888766665445689999999999888777676641     2345555565 67999999998753

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=96.76  E-value=0.021  Score=54.50  Aligned_cols=112  Identities=14%  Similarity=0.244  Sum_probs=67.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEE-Ec-CCcc----ccC--CCCE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKIL-AS-VDYA----VTA--GSDL  108 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~-~t-~~~~----al~--~aDi  108 (350)
                      |||.|+|| |.+|++++..|++.+.  +|+++|+..+........+.+...  ....+. .. +|.+    +++  ++|+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~~~d~   76 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLGG--KHPTFVEGDIRNEALLTEILHDHAIDT   76 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhcC--CCceEEEccCCCHHHHHHHHhcCCCCE
Confidence            68999998 9999999999999885  899998754322221112222110  111111 11 1222    233  5899


Q ss_pred             EEEecCCCcC--ccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          109 CIVTAGARQI--AGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       109 VIi~~g~~~~--~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ||.+++....  ......+.+..|+.....+++.+.+..... +|.+|
T Consensus        77 vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~S  123 (338)
T PRK10675         77 VIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKN-LIFSS  123 (338)
T ss_pred             EEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEec
Confidence            9998865321  112234667778888888888888764333 44444

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=96.75  E-value=0.014  Score=55.41  Aligned_cols=104  Identities=14%  Similarity=0.175  Sum_probs=63.2

Q ss_pred             CeEEEEcCCh--------------------hHHHHHHHHHhcCCCCeEEEEeCCccchH-HHHHHHHHHhhcCCCceEEE
Q 018760           38 TKISVIGTGN--------------------VGMAIAQTILTQDFVEELALVDAKADKLR-GEMLDLQHAAAFLPRTKILA   96 (350)
Q Consensus        38 ~KI~IIGAG~--------------------vG~~~a~~l~~~~~~~ev~L~D~~~~~l~-~~~~dl~~~~~~~~~~~v~~   96 (350)
                      |||+|-|||+                    -|+++|..|+..|+  +|+++|+++++++ .....+.+.     ...+  
T Consensus         1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~Laea-----GA~~--   71 (341)
T TIGR01724         1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDA-----GVKV--   71 (341)
T ss_pred             CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHC-----CCee--
Confidence            6888888875                    27788999998886  9999999887553 222334432     1222  


Q ss_pred             cCC-ccccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEc-CCcchHHHHHH
Q 018760           97 SVD-YAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVA-NPVDILTYVAW  165 (350)
Q Consensus        97 t~~-~~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~t-NP~~~~~~~~~  165 (350)
                      +++ .++.++||+||++...               ...+++++..+... .+.+++|..| .+.+.+-+.+.
T Consensus        72 AaS~aEAAa~ADVVIL~LPd---------------~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e  128 (341)
T TIGR01724        72 VSDDKEAAKHGEIHVLFTPF---------------GKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLE  128 (341)
T ss_pred             cCCHHHHHhCCCEEEEecCC---------------HHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHH
Confidence            334 4788999999999642               23333333334443 4556666554 44444444443

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.75  E-value=0.0057  Score=59.92  Aligned_cols=75  Identities=20%  Similarity=0.303  Sum_probs=51.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC-------------------ccchHHHHHHHHHHhhcCCCceEEE
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK-------------------ADKLRGEMLDLQHAAAFLPRTKILA   96 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~-------------------~~~l~~~~~dl~~~~~~~~~~~v~~   96 (350)
                      +..||+|+|+|.+|+.++..|+..|+ .+|+|+|.+                   ..|++..+..+....   +..++..
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gv-g~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n---p~v~v~~  209 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGV-GTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN---PDVQVEA  209 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC---CCCEEEE
Confidence            35689999999999999999999997 699999987                   234444444444432   3344433


Q ss_pred             cCC------c-cccCCCCEEEEecC
Q 018760           97 SVD------Y-AVTAGSDLCIVTAG  114 (350)
Q Consensus        97 t~~------~-~al~~aDiVIi~~g  114 (350)
                      ...      . +.++++|+||.+..
T Consensus       210 ~~~~~~~~~~~~~~~~~D~Vv~~~d  234 (376)
T PRK08762        210 VQERVTSDNVEALLQDVDVVVDGAD  234 (376)
T ss_pred             EeccCChHHHHHHHhCCCEEEECCC
Confidence            221      1 23688999999853

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.75  E-value=0.0034  Score=62.20  Aligned_cols=98  Identities=9%  Similarity=0.155  Sum_probs=65.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAGA  115 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g~  115 (350)
                      ..||.|||+|.+|..++..|...|. .+|+++.++.++++..+..+..       ..+....+. +.+.+||+||.|.+.
T Consensus       181 ~kkvlviGaG~~a~~va~~L~~~g~-~~I~V~nRt~~ra~~La~~~~~-------~~~~~~~~l~~~l~~aDiVI~aT~a  252 (414)
T PRK13940        181 SKNVLIIGAGQTGELLFRHVTALAP-KQIMLANRTIEKAQKITSAFRN-------ASAHYLSELPQLIKKADIIIAAVNV  252 (414)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHhcC-------CeEecHHHHHHHhccCCEEEECcCC
Confidence            4689999999999999999998886 5899999998877644333221       123222343 668999999999876


Q ss_pred             CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchH
Q 018760          116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDIL  160 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~  160 (350)
                      |. |-.+. +           .   + + ...-++|-.+.|=|+-
T Consensus       253 ~~-~vi~~-~-----------~---~-~-~~~~~~iDLavPRdid  279 (414)
T PRK13940        253 LE-YIVTC-K-----------Y---V-G-DKPRVFIDISIPQALD  279 (414)
T ss_pred             CC-eeECH-H-----------H---h-C-CCCeEEEEeCCCCCCC
Confidence            63 11110 0           0   0 1 1234678889998874

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.74  E-value=0.0026  Score=51.89  Aligned_cols=71  Identities=15%  Similarity=0.230  Sum_probs=45.2

Q ss_pred             eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEc-CCccccCCCCEEEEec
Q 018760           39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILAS-VDYAVTAGSDLCIVTA  113 (350)
Q Consensus        39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t-~~~~al~~aDiVIi~~  113 (350)
                      ||+|||| |.+|..++..|.....+..+.+++.....-.    .+....... ....+... .+.+.+.++|+||.|.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~   74 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGK----PLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLAL   74 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTS----BHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-S
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCC----eeehhccccccccceeEeecchhHhhcCCEEEecC
Confidence            7999997 9999999999999766555667777652221    123222111 11223222 3457789999999995

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PLN02928 oxidoreductase family protein

Probab=96.72  E-value=0.0061  Score=59.07  Aligned_cols=127  Identities=12%  Similarity=0.069  Sum_probs=70.1

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      ...++|+|||.|.+|+.+|..+..-|.  +|+.+|+...+.......+................+. +.++.||+|+++.
T Consensus       157 l~gktvGIiG~G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~l  234 (347)
T PLN02928        157 LFGKTVFILGYGAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCC  234 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECC
Confidence            445799999999999999999987775  9999998743211100000000000000000011244 5689999999986


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                      ...  + +        |..++.  .+.+....|.+++||++--.=+-...+.+.  +...++-|.
T Consensus       235 Plt--~-~--------T~~li~--~~~l~~Mk~ga~lINvaRG~lVde~AL~~A--L~~g~i~gA  284 (347)
T PLN02928        235 TLT--K-E--------TAGIVN--DEFLSSMKKGALLVNIARGGLLDYDAVLAA--LESGHLGGL  284 (347)
T ss_pred             CCC--h-H--------hhcccC--HHHHhcCCCCeEEEECCCccccCHHHHHHH--HHcCCeeEE
Confidence            422  1 1        111111  233444578899999985433333344333  334577555

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=96.72  E-value=0.0048  Score=58.31  Aligned_cols=105  Identities=17%  Similarity=0.237  Sum_probs=67.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCCEEE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSDLCI  110 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aDiVI  110 (350)
                      |||.|+|+ |.+|+.++..|+..+.  +|+++|++++....    +.+.     ..++...  ++   . +.++++|+||
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~----~~~~-----~~~~~~~D~~~~~~l~~~~~~~d~vi   69 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDRRN----LEGL-----DVEIVEGDLRDPASLRKAVAGCRALF   69 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCccccc----cccC-----CceEEEeeCCCHHHHHHHHhCCCEEE
Confidence            58999998 9999999999999885  89999998765321    1110     1122111  12   2 3477899999


Q ss_pred             EecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          111 VTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       111 i~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      .+++...............|+.....+++.+.+.+-.. +|..|
T Consensus        70 ~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~S  112 (328)
T TIGR03466        70 HVAADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVER-VVYTS  112 (328)
T ss_pred             EeceecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCe-EEEEe
Confidence            98764322223344556667777777777777654333 44444

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK06046 alanine dehydrogenase; Validated

Probab=96.72  E-value=0.0063  Score=58.43  Aligned_cols=74  Identities=14%  Similarity=0.160  Sum_probs=54.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~~aDiVIi~~g  114 (350)
                      ...+|+|||+|.+|...+..+....-+.++.++|+++++++..+.++.+..    ..++....+.+ +++ +|+|+++..
T Consensus       128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~l~-aDiVv~aTp  202 (326)
T PRK06046        128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVV----GCDVTVAEDIEEACD-CDILVTTTP  202 (326)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhc----CceEEEeCCHHHHhh-CCEEEEecC
Confidence            356899999999999998877765556899999999988887666665432    23444455664 465 999999854

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.72  E-value=0.0099  Score=49.77  Aligned_cols=32  Identities=22%  Similarity=0.509  Sum_probs=29.6

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      ||+|+|+|.+|+.++..|+..|. .+++|+|.+
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv-~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGV-GKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-CEEEEEcCC
Confidence            68999999999999999999997 689999976

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.71  E-value=0.0083  Score=52.97  Aligned_cols=73  Identities=19%  Similarity=0.256  Sum_probs=51.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEE--cCCc----cccCCCCE
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA--SVDY----AVTAGSDL  108 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~--t~~~----~al~~aDi  108 (350)
                      +.+++.|+|+ |.+|..++..|+..+.  +|++++++.++++.....+.+..    ...+..  ..+.    ++++++|+
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~di  100 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRARF----GEGVGAVETSDDAARAAAIKGADV  100 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhhc----CCcEEEeeCCCHHHHHHHHhcCCE
Confidence            4579999997 9999999999998773  89999999888776555554221    112221  1222    56889999


Q ss_pred             EEEecC
Q 018760          109 CIVTAG  114 (350)
Q Consensus       109 VIi~~g  114 (350)
                      ||.+..
T Consensus       101 Vi~at~  106 (194)
T cd01078         101 VFAAGA  106 (194)
T ss_pred             EEECCC
Confidence            888754

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.71  E-value=0.009  Score=55.03  Aligned_cols=36  Identities=28%  Similarity=0.490  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      +..||+|||+|.+|+.++..|+..|+ .+++|+|-|.
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gv-g~i~lvD~D~   66 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGV-GTLTLVDFDT   66 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            45699999999999999999999996 6999999753

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.71  E-value=0.0091  Score=58.26  Aligned_cols=84  Identities=18%  Similarity=0.187  Sum_probs=56.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      ..+||+|||. |-||..++..|.+.. ..+|+-+|++.+                    .  .++. +.+++||+||+|+
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~d~--------------------~--~~~~~~~v~~aDlVilav   59 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPADP--------------------G--SLDPATLLQRADVLIFSA   59 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCCcc--------------------c--cCCHHHHhcCCCEEEEeC
Confidence            4579999999 999999999999762 348888997411                    0  1133 5688999999996


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ..            ..+.+++.++++......|+++|.-++
T Consensus        60 Pv------------~~~~~~l~~l~~~~~~l~~~~iVtDVg   88 (370)
T PRK08818         60 PI------------RHTAALIEEYVALAGGRAAGQLWLDVT   88 (370)
T ss_pred             CH------------HHHHHHHHHHhhhhcCCCCCeEEEECC
Confidence            42            234555555555432245677666553

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.71  E-value=0.012  Score=58.12  Aligned_cols=107  Identities=13%  Similarity=0.137  Sum_probs=68.7

Q ss_pred             ccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCce
Q 018760           14 GLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTK   93 (350)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~   93 (350)
                      |+....++.    +.-+.  .....+|+|+|+|.+|..++..+...|.  +|+.+|+++.+++. +    ....    ..
T Consensus       185 g~s~~~~i~----r~t~~--~l~GktVvViG~G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~-A----~~~G----~~  247 (413)
T cd00401         185 RESLIDGIK----RATDV--MIAGKVAVVAGYGDVGKGCAQSLRGQGA--RVIVTEVDPICALQ-A----AMEG----YE  247 (413)
T ss_pred             chhhHHHHH----HhcCC--CCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEECChhhHHH-H----HhcC----CE
Confidence            555556665    32211  2345699999999999999999988886  79999999887652 1    1111    12


Q ss_pred             EEEcCCccccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760           94 ILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus        94 v~~t~~~~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      +.  ...++++++|+||.+.|.+               .++..  ..+....+.+++++++.+
T Consensus       248 ~~--~~~e~v~~aDVVI~atG~~---------------~~i~~--~~l~~mk~GgilvnvG~~  291 (413)
T cd00401         248 VM--TMEEAVKEGDIFVTTTGNK---------------DIITG--EHFEQMKDGAIVCNIGHF  291 (413)
T ss_pred             Ec--cHHHHHcCCCEEEECCCCH---------------HHHHH--HHHhcCCCCcEEEEeCCC
Confidence            21  1125678999999987632               12211  113334678899999864

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.70  E-value=0.0084  Score=56.82  Aligned_cols=69  Identities=17%  Similarity=0.238  Sum_probs=48.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      +....|+.|||+|.+|..++..|...|.  +|.++|+++++.+ .   ... .    ..+.....+. +.++++|+||.+
T Consensus       149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~-~---~~~-~----G~~~~~~~~l~~~l~~aDiVI~t  217 (296)
T PRK08306        149 TIHGSNVLVLGFGRTGMTLARTLKALGA--NVTVGARKSAHLA-R---ITE-M----GLSPFHLSELAEEVGKIDIIFNT  217 (296)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEECCHHHHH-H---HHH-c----CCeeecHHHHHHHhCCCCEEEEC
Confidence            3356799999999999999999998885  9999999976433 1   111 1    1122212233 568899999998


Q ss_pred             c
Q 018760          113 A  113 (350)
Q Consensus       113 ~  113 (350)
                      .
T Consensus       218 ~  218 (296)
T PRK08306        218 I  218 (296)
T ss_pred             C
Confidence            6

>PRK06199 ornithine cyclodeaminase; Validated

Probab=96.70  E-value=0.0071  Score=59.29  Aligned_cols=76  Identities=13%  Similarity=0.170  Sum_probs=57.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcC-CCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQD-FVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~-~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ...++|||+|..+...+..++.-. -+.+|.++|+++++++..+.++.+...  ...++....+. +++++||+|+.+..
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~--~~~~v~~~~s~~eav~~ADIVvtaT~  232 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYP--QITNVEVVDSIEEVVRGSDIVTYCNS  232 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcC--CCceEEEeCCHHHHHcCCCEEEEccC
Confidence            468999999999999888777643 368999999999999877777765321  11135555665 67999999998753

>PLN02427 UDP-apiose/xylose synthase

Probab=96.68  E-value=0.0042  Score=60.73  Aligned_cols=115  Identities=16%  Similarity=0.187  Sum_probs=67.3

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh--hcCCCceEEEc--CC---c-cccC
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA--AFLPRTKILAS--VD---Y-AVTA  104 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~--~~~~~~~v~~t--~~---~-~al~  104 (350)
                      ..++|||.|+|| |.+|+.++..|++.+- .+|+.+|++.++...    +....  ......++...  +|   . ++++
T Consensus        11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g-~~V~~l~r~~~~~~~----l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~   85 (386)
T PLN02427         11 PIKPLTICMIGAGGFIGSHLCEKLMTETP-HKVLALDVYNDKIKH----LLEPDTVPWSGRIQFHRINIKHDSRLEGLIK   85 (386)
T ss_pred             cccCcEEEEECCcchHHHHHHHHHHhcCC-CEEEEEecCchhhhh----hhccccccCCCCeEEEEcCCCChHHHHHHhh
Confidence            446689999998 9999999999998741 389999987654431    11110  00112222211  12   2 3577


Q ss_pred             CCCEEEEecCCCcC--ccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          105 GSDLCIVTAGARQI--AGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       105 ~aDiVIi~~g~~~~--~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ++|+||-+++....  ......+.+..|+.-...+.+...+..  ..+|.+|.
T Consensus        86 ~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~SS  136 (386)
T PLN02427         86 MADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFST  136 (386)
T ss_pred             cCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEee
Confidence            89999999874321  111223445556665566666666544  24555553

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.68  E-value=0.0055  Score=57.64  Aligned_cols=91  Identities=10%  Similarity=0.215  Sum_probs=63.4

Q ss_pred             hhhhhccccCCCCCCCCCCCCeEEEEcCCh-hHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEE
Q 018760           18 TQTFFKPINHAAPPSPTKRHTKISVIGTGN-VGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA   96 (350)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~-vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~   96 (350)
                      ..||.+.++.-..   ..+..+|+|||+|. +|.+++..|+..+.  .|++++....       ++.             
T Consensus       143 ~~gii~~L~~~~i---~l~Gk~vvViG~gg~vGkpia~~L~~~ga--tVtv~~~~t~-------~L~-------------  197 (283)
T PRK14192        143 PAGIMRLLKAYNI---ELAGKHAVVVGRSAILGKPMAMMLLNANA--TVTICHSRTQ-------NLP-------------  197 (283)
T ss_pred             HHHHHHHHHHcCC---CCCCCEEEEECCcHHHHHHHHHHHHhCCC--EEEEEeCCch-------hHH-------------
Confidence            3788887776554   45566999999987 99999999999885  8999986221       111             


Q ss_pred             cCCccccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc-CCc
Q 018760           97 SVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA-NPV  157 (350)
Q Consensus        97 t~~~~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t-NP~  157 (350)
                          +.+++||+||.+.|.|. +  -..                 ....|.++++-+. ||.
T Consensus       198 ----~~~~~aDIvI~AtG~~~-~--v~~-----------------~~lk~gavViDvg~n~~  235 (283)
T PRK14192        198 ----ELVKQADIIVGAVGKPE-L--IKK-----------------DWIKQGAVVVDAGFHPR  235 (283)
T ss_pred             ----HHhccCCEEEEccCCCC-c--CCH-----------------HHcCCCCEEEEEEEeec
Confidence                22379999999987442 1  000                 1136788888874 885

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.66  E-value=0.002  Score=56.05  Aligned_cols=71  Identities=28%  Similarity=0.386  Sum_probs=51.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC-ccccCCCCEEEEecCC
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD-YAVTAGSDLCIVTAGA  115 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~-~~al~~aDiVIi~~g~  115 (350)
                      |||+|||| |.+|+.++...+.+|.  ||+.+=+|+.++...    +... . ....|.--+. .+++.+-|+||.+.|.
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~~----~~~~-i-~q~Difd~~~~a~~l~g~DaVIsA~~~   72 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAAR----QGVT-I-LQKDIFDLTSLASDLAGHDAVISAFGA   72 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhcccc----ccce-e-ecccccChhhhHhhhcCCceEEEeccC
Confidence            79999999 9999999999999996  999999999877531    1110 0 0112221111 2579999999999775


Q ss_pred             C
Q 018760          116 R  116 (350)
Q Consensus       116 ~  116 (350)
                      +
T Consensus        73 ~   73 (211)
T COG2910          73 G   73 (211)
T ss_pred             C
Confidence            5

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.65  E-value=0.01  Score=54.50  Aligned_cols=36  Identities=22%  Similarity=0.490  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      +..||+|+|+|.+|+.++..|+..|+ .+++|+|.|.
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~Gv-g~i~lvD~D~   58 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAAGV-GNLTLLDFDT   58 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence            35699999999999999999999996 6999999753

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=96.65  E-value=0.041  Score=52.00  Aligned_cols=105  Identities=11%  Similarity=0.183  Sum_probs=64.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCCEE
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSDLC  109 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aDiV  109 (350)
                      .+||.|+|| |.+|+.++..|+..|.  +|++++++.+.... ...+...........+...  ++   . +.++++|+|
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V   80 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKK-TEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGV   80 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhh-HHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEE
Confidence            368999998 9999999999999985  89888887654321 1122211100011222211  11   2 347889999


Q ss_pred             EEecCCCcCc-cccHHHHHHhhHHHHHHHHhhhhcc
Q 018760          110 IVTAGARQIA-GESRLNLLQRNLSLFKAIIPPLVKY  144 (350)
Q Consensus       110 Ii~~g~~~~~-g~~r~~~~~~n~~i~~~i~~~i~~~  144 (350)
                      |.+++..... .....+.+..|+.-...+.+.+.+.
T Consensus        81 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~  116 (322)
T PLN02662         81 FHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKV  116 (322)
T ss_pred             EEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhC
Confidence            9998643211 1122355666888888888877665

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.60  E-value=0.0029  Score=61.83  Aligned_cols=74  Identities=22%  Similarity=0.240  Sum_probs=50.7

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-cccCCCCEEEE
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-AVTAGSDLCIV  111 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-~al~~aDiVIi  111 (350)
                      .++.||+|+|+|.+|...+..+...|.  +|..+|+++++++.    +.....  ........  .++ +.++++|+||.
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa--~V~v~d~~~~~~~~----l~~~~g--~~v~~~~~~~~~l~~~l~~aDvVI~  236 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGA--TVTILDINIDRLRQ----LDAEFG--GRIHTRYSNAYEIEDAVKRADLLIG  236 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCC--eEEEEECCHHHHHH----HHHhcC--ceeEeccCCHHHHHHHHccCCEEEE
Confidence            456789999999999999999998886  79999999876653    222111  01111111  122 45789999999


Q ss_pred             ecCCC
Q 018760          112 TAGAR  116 (350)
Q Consensus       112 ~~g~~  116 (350)
                      +++.+
T Consensus       237 a~~~~  241 (370)
T TIGR00518       237 AVLIP  241 (370)
T ss_pred             ccccC
Confidence            97554

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=96.58  E-value=0.01  Score=58.69  Aligned_cols=117  Identities=14%  Similarity=0.201  Sum_probs=67.5

Q ss_pred             hhhccccCCCCCCCCCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc-
Q 018760           20 TFFKPINHAAPPSPTKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS-   97 (350)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t-   97 (350)
                      |++..+.+-++.....+.++|.|+|| |.+|.+++..|++.|.  +|+++++++++++.   .+....   ........ 
T Consensus       161 ~~~~~~d~~~~ta~sl~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~l~~---~~~~~~---~~v~~v~~D  232 (406)
T PRK07424        161 GTFTLVDKLMGTALSLKGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDKITL---EINGED---LPVKTLHWQ  232 (406)
T ss_pred             eeEEEeehhcCcccCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH---HHhhcC---CCeEEEEee
Confidence            44444444443333345568999999 9999999999999885  89999998765532   121111   01111111 


Q ss_pred             -CCc----cccCCCCEEEEecCCCcCccccH---HHHHHhh----HHHHHHHHhhhhcc
Q 018760           98 -VDY----AVTAGSDLCIVTAGARQIAGESR---LNLLQRN----LSLFKAIIPPLVKY  144 (350)
Q Consensus        98 -~~~----~al~~aDiVIi~~g~~~~~g~~r---~~~~~~n----~~i~~~i~~~i~~~  144 (350)
                       +|.    +.+.+.|++|..+|.......+.   .+.+.-|    ..+++.+.+.+++.
T Consensus       233 vsd~~~v~~~l~~IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~  291 (406)
T PRK07424        233 VGQEAALAELLEKVDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTN  291 (406)
T ss_pred             CCCHHHHHHHhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             122    23678999999887643222221   2223334    45566666666553

>PRK08223 hypothetical protein; Validated

Probab=96.58  E-value=0.012  Score=55.35  Aligned_cols=35  Identities=20%  Similarity=0.399  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      +..||.|||+|.+|+.++..|+..|+ .+|.|+|-|
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~aGV-G~i~lvD~D   60 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLARLGI-GKFTIADFD   60 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHhCC-CeEEEEeCC
Confidence            35689999999999999999999997 689999975

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=96.58  E-value=0.0081  Score=58.84  Aligned_cols=94  Identities=15%  Similarity=0.241  Sum_probs=59.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      ....++|+|||.|+||+.++..+..-|.  +|+.+|......+         .    ...   ..+. +.++.||+|++.
T Consensus       113 ~l~gktvGIIG~G~IG~~va~~l~a~G~--~V~~~Dp~~~~~~---------~----~~~---~~~l~ell~~aDiV~lh  174 (381)
T PRK00257        113 DLAERTYGVVGAGHVGGRLVRVLRGLGW--KVLVCDPPRQEAE---------G----DGD---FVSLERILEECDVISLH  174 (381)
T ss_pred             CcCcCEEEEECCCHHHHHHHHHHHHCCC--EEEEECCcccccc---------c----Ccc---ccCHHHHHhhCCEEEEe
Confidence            3456799999999999999999988886  9999997543111         0    011   1245 457899999998


Q ss_pred             cCCCcC-ccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          113 AGARQI-AGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       113 ~g~~~~-~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ...... +-.++ .++  |.       +.+....|++++||++-
T Consensus       175 ~Plt~~g~~~T~-~li--~~-------~~l~~mk~gailIN~aR  208 (381)
T PRK00257        175 TPLTKEGEHPTR-HLL--DE-------AFLASLRPGAWLINASR  208 (381)
T ss_pred             CcCCCCcccccc-ccC--CH-------HHHhcCCCCeEEEECCC
Confidence            643211 00111 111  21       23344468899999874

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=96.57  E-value=0.06  Score=51.07  Aligned_cols=116  Identities=14%  Similarity=0.184  Sum_probs=68.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccCCCCE
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAGSDL  108 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~aDi  108 (350)
                      +.++|.|+|+ |.+|++++..|+..|.  +|++++++.+..... ..+...........+...  ++.    +.++++|+
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~   80 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKT-DHLLALDGAKERLKLFKADLLDEGSFELAIDGCET   80 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhH-HHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCE
Confidence            4568999998 9999999999999985  888888877654321 111111000011222211  122    24678999


Q ss_pred             EEEecCCCcCc-c-ccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          109 CIVTAGARQIA-G-ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       109 VIi~~g~~~~~-g-~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ||.+++..... . ......+..|+.-...+.+.+.+......+|++|
T Consensus        81 vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~S  128 (325)
T PLN02989         81 VFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTS  128 (325)
T ss_pred             EEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEec
Confidence            99998753211 1 1123445667777777777776643223455544

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=96.56  E-value=0.014  Score=56.17  Aligned_cols=113  Identities=13%  Similarity=0.046  Sum_probs=68.1

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccC--CCC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTA--GSD  107 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~--~aD  107 (350)
                      .++|.|+|+ |.+|++++..|++.|.  +|+.+|++.+........+.. .   ........  ++.    +.++  +.|
T Consensus         4 ~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~-~---~~~~~~~~Dl~~~~~~~~~~~~~~~d   77 (349)
T TIGR02622         4 GKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNL-A---KKIEDHFGDIRDAAKLRKAIAEFKPE   77 (349)
T ss_pred             CCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhh-c---CCceEEEccCCCHHHHHHHHhhcCCC
Confidence            368999998 9999999999999985  899999877544322111211 0   11121111  122    2233  359


Q ss_pred             EEEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          108 LCIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       108 iVIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +||.+++.+...  .......+..|+.-...+.+.+.+.+....+|++|.
T Consensus        78 ~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS  127 (349)
T TIGR02622        78 IVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS  127 (349)
T ss_pred             EEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            999998743211  112344566788777888887776552334556554

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=96.55  E-value=0.0065  Score=56.39  Aligned_cols=97  Identities=14%  Similarity=0.229  Sum_probs=65.5

Q ss_pred             EEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCCcC
Q 018760           40 ISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQI  118 (350)
Q Consensus        40 I~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~~~  118 (350)
                      |.|+|| |.+|+.++..|+..+.  +|+.++++++.......     ....   .+......++++++|+||.+++.+..
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~D~Vvh~a~~~~~   70 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGANTKW-----EGYK---PWAPLAESEALEGADAVINLAGEPIA   70 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCcccc-----eeee---cccccchhhhcCCCCEEEECCCCCcc
Confidence            578998 9999999999999885  99999998765432110     0000   01111123568899999999876532


Q ss_pred             cc----ccHHHHHHhhHHHHHHHHhhhhccCC
Q 018760          119 AG----ESRLNLLQRNLSLFKAIIPPLVKYSP  146 (350)
Q Consensus       119 ~g----~~r~~~~~~n~~i~~~i~~~i~~~~p  146 (350)
                      .+    .....+...|+...+.+.+.+.+...
T Consensus        71 ~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~  102 (292)
T TIGR01777        71 DKRWTEERKQEIRDSRIDTTRALVEAIAAAEQ  102 (292)
T ss_pred             cccCCHHHHHHHHhcccHHHHHHHHHHHhcCC
Confidence            21    12345566788888999999888754

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=96.55  E-value=0.0044  Score=54.04  Aligned_cols=120  Identities=18%  Similarity=0.306  Sum_probs=71.9

Q ss_pred             CCCCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHH-HHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhc
Q 018760           10 LGPGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQ-TILTQDFVEELALVDAKADKLRGEMLDLQHAAAF   88 (350)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~-~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~   88 (350)
                      ||--|-|..+--++.|-.+.-  ...+..++.|||+|++|.+++. .+..+.-..-+..+|+++++.-.   ...     
T Consensus        59 lGkrG~GYnV~~L~~ff~~~L--g~~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~---~~~-----  128 (211)
T COG2344          59 LGKRGYGYNVKYLRDFFDDLL--GQDKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGT---KIG-----  128 (211)
T ss_pred             cCCCCCCccHHHHHHHHHHHh--CCCcceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCc---ccC-----
Confidence            445555555443333223322  2445679999999999999984 56655545678899999974421   111     


Q ss_pred             CCCceEEEcCCcc-ccC--CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch
Q 018760           89 LPRTKILASVDYA-VTA--GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI  159 (350)
Q Consensus        89 ~~~~~v~~t~~~~-al~--~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~  159 (350)
                        ...|.--++.+ -++  +.|+.|+|+.                ....+++++.+.+.+=++ ++++| |+.+
T Consensus       129 --~v~V~~~d~le~~v~~~dv~iaiLtVP----------------a~~AQ~vad~Lv~aGVkG-IlNFt-Pv~l  182 (211)
T COG2344         129 --DVPVYDLDDLEKFVKKNDVEIAILTVP----------------AEHAQEVADRLVKAGVKG-ILNFT-PVRL  182 (211)
T ss_pred             --CeeeechHHHHHHHHhcCccEEEEEcc----------------HHHHHHHHHHHHHcCCce-EEecc-ceEe
Confidence              22333222332 233  8899999963                234456677777766666 56776 5554

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.52  E-value=0.011  Score=57.48  Aligned_cols=73  Identities=18%  Similarity=0.277  Sum_probs=50.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc-------------------cchHHHHHHHHHHhhcCCCceEEEc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA-------------------DKLRGEMLDLQHAAAFLPRTKILAS   97 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~v~~t   97 (350)
                      ..||+|+|+|.+|+.++..|+..|+ +++.|+|.|.                   .|++..+..|...   .+..++...
T Consensus        28 ~~~VlivG~GGlGs~~a~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~---np~v~v~~~  103 (355)
T PRK05597         28 DAKVAVIGAGGLGSPALLYLAGAGV-GHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLAL---NPDVKVTVS  103 (355)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHH---CCCcEEEEE
Confidence            4699999999999999999999997 6899999764                   2333333333332   234455432


Q ss_pred             CC-------ccccCCCCEEEEec
Q 018760           98 VD-------YAVTAGSDLCIVTA  113 (350)
Q Consensus        98 ~~-------~~al~~aDiVIi~~  113 (350)
                      ..       .+-++++|+||.+.
T Consensus       104 ~~~i~~~~~~~~~~~~DvVvd~~  126 (355)
T PRK05597        104 VRRLTWSNALDELRDADVILDGS  126 (355)
T ss_pred             EeecCHHHHHHHHhCCCEEEECC
Confidence            11       13478999999985

>PLN00198 anthocyanidin reductase; Provisional

Probab=96.52  E-value=0.02  Score=54.73  Aligned_cols=114  Identities=16%  Similarity=0.235  Sum_probs=68.1

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccCCCCEE
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAGSDLC  109 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~aDiV  109 (350)
                      ++||.|+|| |.+|++++..|++.|.  +|++++++.+..... ..+...... ...++...  +|.    +.++++|+|
T Consensus         9 ~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~-~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~v   84 (338)
T PLN00198          9 KKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKI-AHLRALQEL-GDLKIFGADLTDEESFEAPIAGCDLV   84 (338)
T ss_pred             CCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHH-HHHHhcCCC-CceEEEEcCCCChHHHHHHHhcCCEE
Confidence            568999998 9999999999999885  888888776543211 111111100 11222211  122    346789999


Q ss_pred             EEecCCCcCcccc-HHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          110 IVTAGARQIAGES-RLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       110 Ii~~g~~~~~g~~-r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |.+++.......+ ..+++..|+.-...+.+.+.+.+.-..+|.+|
T Consensus        85 ih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~S  130 (338)
T PLN00198         85 FHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTS  130 (338)
T ss_pred             EEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEee
Confidence            9988642211122 23455678888888888877753222344443

>PRK04148 hypothetical protein; Provisional

Probab=96.52  E-value=0.009  Score=49.68  Aligned_cols=71  Identities=11%  Similarity=0.229  Sum_probs=46.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~  112 (350)
                      ..+.+||++||+| -|..+|..|.+.|.  +|+.+|+++++++.    ..+........++. ..+.+-.++||+|...
T Consensus        14 ~~~~~kileIG~G-fG~~vA~~L~~~G~--~ViaIDi~~~aV~~----a~~~~~~~v~dDlf-~p~~~~y~~a~liysi   84 (134)
T PRK04148         14 KGKNKKIVELGIG-FYFKVAKKLKESGF--DVIVIDINEKAVEK----AKKLGLNAFVDDLF-NPNLEIYKNAKLIYSI   84 (134)
T ss_pred             cccCCEEEEEEec-CCHHHHHHHHHCCC--EEEEEECCHHHHHH----HHHhCCeEEECcCC-CCCHHHHhcCCEEEEe
Confidence            3455799999999 88888988998885  99999999985542    22221000011111 1233557899998877

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.51  E-value=0.00075  Score=66.18  Aligned_cols=71  Identities=30%  Similarity=0.392  Sum_probs=47.1

Q ss_pred             EEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEE--cCCc----cccCCCCEEEEec
Q 018760           40 ISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA--SVDY----AVTAGSDLCIVTA  113 (350)
Q Consensus        40 I~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~--t~~~----~al~~aDiVIi~~  113 (350)
                      |.|+|+|.+|+.++..|++.....+|++.|++.++++.....+..     ...+...  -+|.    +.++++|+||.++
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~l~~~~~~~dvVin~~   75 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLG-----DRVEAVQVDVNDPESLAELLRGCDVVINCA   75 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TT-----TTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccc-----cceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence            789999999999999999988655899999999988765444311     1222211  1232    3589999999998


Q ss_pred             CC
Q 018760          114 GA  115 (350)
Q Consensus       114 g~  115 (350)
                      |.
T Consensus        76 gp   77 (386)
T PF03435_consen   76 GP   77 (386)
T ss_dssp             SG
T ss_pred             cc
Confidence            64

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=96.50  E-value=0.041  Score=50.39  Aligned_cols=44  Identities=14%  Similarity=0.380  Sum_probs=37.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      |++.|+|+ |.+|..++..|++.|.  +|++.++++++++....++.
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~   45 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNEENLEKALKELK   45 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHH
Confidence            58999999 8999999999999995  89999999887765555554

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=96.50  E-value=0.0066  Score=58.11  Aligned_cols=113  Identities=21%  Similarity=0.243  Sum_probs=74.7

Q ss_pred             hHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHH----hhc---------CCCceEEEcCCccccCCCCEEEEecC
Q 018760           48 VGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHA----AAF---------LPRTKILASVDYAVTAGSDLCIVTAG  114 (350)
Q Consensus        48 vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~----~~~---------~~~~~v~~t~~~~al~~aDiVIi~~g  114 (350)
                      ||+.+|..++..++  +++|+|.|...+++-...+...    ...         .....+..+.|++.++++|+|+.++ 
T Consensus         1 MG~gia~~~~~~~i--~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~~~~~dmvieav-   77 (380)
T KOG1683|consen    1 MGAGIAIVFILAGI--RTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTGFANADMVIEAV-   77 (380)
T ss_pred             CcchHHHHHHHcCC--cEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccccccccceeccch-
Confidence            57788999999997  8999999976554322222211    100         0123344566889999999997774 


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                                   .+|++...++...|+++||+. -|..||....-...+..-+ -.+++++|+
T Consensus        78 -------------~edl~Lk~~l~~~le~v~~~~-~i~gsntSs~~~~~isa~l-d~~e~vvg~  126 (380)
T KOG1683|consen   78 -------------FEDLELKHELFKSLEKVEPPK-CIRGSNTSSLDINVISAGL-DRPEMVVGM  126 (380)
T ss_pred             -------------hhhHHHHHHHHHHHHhhcCCc-ceeeeccccCChHHHhhcc-Cchhhhccc
Confidence                         358999999999999998765 3457776665333332222 235788776

>PRK06194 hypothetical protein; Provisional

Probab=96.48  E-value=0.07  Score=49.57  Aligned_cols=45  Identities=22%  Similarity=0.357  Sum_probs=37.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      .++|.|+|| |.+|+.++..|+..|.  +|+++|++.++++....++.
T Consensus         6 ~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~   51 (287)
T PRK06194          6 GKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELR   51 (287)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHH
Confidence            357999998 9999999999999985  89999998877765555544

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.47  E-value=0.016  Score=51.57  Aligned_cols=35  Identities=26%  Similarity=0.539  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      +..||+|+|+|.+|+.++..|+..|+ .+++++|-+
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~GV-g~i~lvD~d   54 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLSGI-GSLTILDDR   54 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHcCC-CEEEEEECC
Confidence            35699999999999999999999997 689999975

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=96.46  E-value=0.046  Score=52.73  Aligned_cols=115  Identities=11%  Similarity=0.134  Sum_probs=68.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh-c-CCCceEEEcCCc-------cccCC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA-F-LPRTKILASVDY-------AVTAG  105 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~-~-~~~~~v~~t~~~-------~al~~  105 (350)
                      +++||.|+|| |.+|++++..|+..+.  +|+.+|+..........++..... . ........ .|.       +.+++
T Consensus        14 ~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Di~d~~~l~~~~~~   90 (348)
T PRK15181         14 APKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQ-GDIRKFTDCQKACKN   90 (348)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEE-ccCCCHHHHHHHhhC
Confidence            3479999998 9999999999999985  899999865322211111111000 0 01122221 231       23688


Q ss_pred             CCEEEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          106 SDLCIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       106 aDiVIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +|+||-++.....+  ..........|+.-..++.+.+++....- +|.+|
T Consensus        91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~-~v~~S  140 (348)
T PRK15181         91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSS-FTYAA  140 (348)
T ss_pred             CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCe-EEEee
Confidence            99999998643211  12334556678888888888888764332 44443

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.46  E-value=0.032  Score=50.46  Aligned_cols=46  Identities=13%  Similarity=0.226  Sum_probs=37.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      +.++|.|+|| |.+|..++..|++.|.  +|+++++++++++....++.
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~   50 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNEEAAERVAAEIL   50 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHh
Confidence            3468999999 9999999999999985  89999999877664444443

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.45  E-value=0.043  Score=51.17  Aligned_cols=35  Identities=26%  Similarity=0.479  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      +..+|+|+|+|.+|+.++..|+..|+ .+|+|+|-|
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GV-g~itLiD~D   63 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGI-GAITLIDMD   63 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCC
Confidence            45689999999999999999999997 689999976

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=96.45  E-value=0.025  Score=51.55  Aligned_cols=115  Identities=13%  Similarity=0.178  Sum_probs=72.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC--------ccccCCCCE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD--------YAVTAGSDL  108 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~--------~~al~~aDi  108 (350)
                      +-+.|.|| +.+|.++|..|++.|.  +|+|..+..++|+.++.++.+.........|+-..+        .+.+...|+
T Consensus         7 kv~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDi   84 (246)
T COG4221           7 KVALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDI   84 (246)
T ss_pred             cEEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccE
Confidence            34567799 7999999999999996  999999999999988877774110101112210000        134678999


Q ss_pred             EEEecCCCcCcc---cc---HHHHHHhhHH----HHHHHHhhhhccCCCeEEEEEcC
Q 018760          109 CIVTAGARQIAG---ES---RLNLLQRNLS----LFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       109 VIi~~g~~~~~g---~~---r~~~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +|..+|...-..   ..   -..++..|+.    ..+-+.+.|.+.. .+.|||.+-
T Consensus        85 LvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~-~G~IiN~~S  140 (246)
T COG4221          85 LVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERK-SGHIINLGS  140 (246)
T ss_pred             EEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcC-CceEEEecc
Confidence            999988643211   11   1234555644    4555566666543 456777763

>PLN02240 UDP-glucose 4-epimerase

Probab=96.44  E-value=0.079  Score=50.76  Aligned_cols=116  Identities=17%  Similarity=0.178  Sum_probs=67.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh-cCCCceEEEc--CCcc----ccC--C
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA-FLPRTKILAS--VDYA----VTA--G  105 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~-~~~~~~v~~t--~~~~----al~--~  105 (350)
                      +++||.|+|+ |.+|++++..|+..+.  +|+++|+...........+.+... .....+....  ++.+    .++  +
T Consensus         4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~   81 (352)
T PLN02240          4 MGRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTR   81 (352)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCC
Confidence            3469999998 9999999999999884  899998754322211112222110 0011222211  1222    222  6


Q ss_pred             CCEEEEecCCCcC-cc-ccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          106 SDLCIVTAGARQI-AG-ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       106 aDiVIi~~g~~~~-~g-~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +|+||.+++.... +. ......+..|+.....+++.+.+..... +|.+|
T Consensus        82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~S  131 (352)
T PLN02240         82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKK-LVFSS  131 (352)
T ss_pred             CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEc
Confidence            8999999875421 11 2234567778888888888777654333 44444

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.44  E-value=0.047  Score=49.80  Aligned_cols=113  Identities=14%  Similarity=0.180  Sum_probs=66.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------  102 (350)
                      .+++.|+|+ |.+|..++..|++.|.  +|+++++++++.+....++.+..   ....+...  ++.+.           
T Consensus         7 ~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~   81 (262)
T PRK13394          7 GKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG---GKAIGVAMDVTNEDAVNAGIDKVAER   81 (262)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC---ceEEEEECCCCCHHHHHHHHHHHHHH
Confidence            457999999 9999999999999986  89999999877765555554321   11111111  11111           


Q ss_pred             cCCCCEEEEecCCCcC-c--c---ccHHHHHHhhHHH----HHHHHhhhhccCCCeEEEEEc
Q 018760          103 TAGSDLCIVTAGARQI-A--G---ESRLNLLQRNLSL----FKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~-~--g---~~r~~~~~~n~~i----~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ....|+||.++|.... +  .   +.-...+..|..-    .+.+.+.+.+.++.+.++++|
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~s  143 (262)
T PRK13394         82 FGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMG  143 (262)
T ss_pred             cCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEc
Confidence            1347999999876421 1  1   1112223344443    556666663333344555554

>PLN02494 adenosylhomocysteinase

Probab=96.43  E-value=0.02  Score=57.32  Aligned_cols=107  Identities=14%  Similarity=0.223  Sum_probs=69.7

Q ss_pred             ccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCce
Q 018760           14 GLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTK   93 (350)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~   93 (350)
                      |+.+..|+.    +....  .....+|+|+|+|.+|..++..+...|.  +|+.+|+++.+... +  ..+.  +    .
T Consensus       237 gqS~~d~i~----r~t~i--~LaGKtVvViGyG~IGr~vA~~aka~Ga--~VIV~e~dp~r~~e-A--~~~G--~----~  299 (477)
T PLN02494        237 RHSLPDGLM----RATDV--MIAGKVAVICGYGDVGKGCAAAMKAAGA--RVIVTEIDPICALQ-A--LMEG--Y----Q  299 (477)
T ss_pred             cccHHHHHH----HhcCC--ccCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchhhHH-H--HhcC--C----e
Confidence            566666666    33221  2345789999999999999999987776  89999999865431 1  1111  1    2


Q ss_pred             EEEcCCc-cccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc
Q 018760           94 ILASVDY-AVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV  157 (350)
Q Consensus        94 v~~t~~~-~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~  157 (350)
                      +.   +. ++++.+|+||.+.|...               ++.  .+.+....+++++++++-+.
T Consensus       300 vv---~leEal~~ADVVI~tTGt~~---------------vI~--~e~L~~MK~GAiLiNvGr~~  344 (477)
T PLN02494        300 VL---TLEDVVSEADIFVTTTGNKD---------------IIM--VDHMRKMKNNAIVCNIGHFD  344 (477)
T ss_pred             ec---cHHHHHhhCCEEEECCCCcc---------------chH--HHHHhcCCCCCEEEEcCCCC
Confidence            21   23 56889999999765321               110  23334456889999999864

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=96.43  E-value=0.012  Score=56.53  Aligned_cols=73  Identities=11%  Similarity=0.217  Sum_probs=57.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      ...++|||+|..+..-+..+..---+.+|.++|++++..+..+.+++....    ..+...++. +++++||+|+.+.
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~----~~v~a~~s~~~av~~aDiIvt~T  203 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGG----EAVGAADSAEEAVEGADIVVTAT  203 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcC----ccceeccCHHHHhhcCCEEEEec
Confidence            457999999998888887776655468999999999988887777776542    245556665 6899999999984

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.43  E-value=0.0066  Score=56.80  Aligned_cols=83  Identities=11%  Similarity=0.155  Sum_probs=56.5

Q ss_pred             CCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCC
Q 018760           12 PGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR   91 (350)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~   91 (350)
                      -||.||..+|.    ....+    ...++.|+|||..++++++.|++.+. .+|.+++++.++++..+..+.    .   
T Consensus       105 TD~~Gf~~~L~----~~~~~----~~~~vlilGaGGaarAi~~aL~~~g~-~~i~i~nR~~~~a~~la~~~~----~---  168 (272)
T PRK12550        105 TDYIAIAKLLA----SYQVP----PDLVVALRGSGGMAKAVAAALRDAGF-TDGTIVARNEKTGKALAELYG----Y---  168 (272)
T ss_pred             cCHHHHHHHHH----hcCCC----CCCeEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHhC----C---
Confidence            47888887775    22221    12389999999999999999998886 589999999987765443321    1   


Q ss_pred             ceEEEcCCccccCCCCEEEEecC
Q 018760           92 TKILASVDYAVTAGSDLCIVTAG  114 (350)
Q Consensus        92 ~~v~~t~~~~al~~aDiVIi~~g  114 (350)
                       ..  ..+. ...++|+||.|..
T Consensus       169 -~~--~~~~-~~~~~dlvINaTp  187 (272)
T PRK12550        169 -EW--RPDL-GGIEADILVNVTP  187 (272)
T ss_pred             -cc--hhhc-ccccCCEEEECCc
Confidence             11  0011 1256899999854

>PRK07102 short chain dehydrogenase; Provisional

Probab=96.40  E-value=0.033  Score=50.45  Aligned_cols=44  Identities=25%  Similarity=0.326  Sum_probs=36.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      ++|.|+|| |.+|..++..|++.|.  +|+++|+++++++....++.
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~   46 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLR   46 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHH
Confidence            58999998 9999999999999985  89999999877765544544

>PLN02858 fructose-bisphosphate aldolase

Probab=96.40  E-value=0.0097  Score=67.28  Aligned_cols=67  Identities=19%  Similarity=0.327  Sum_probs=50.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAGA  115 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g~  115 (350)
                      .+||++||.|.||.+++..|+..|.  +|+.+|+++++++.    +....     ...  ..+. +.+++||+||++...
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G~--~V~v~dr~~~~~~~----l~~~G-----a~~--~~s~~e~~~~aDvVi~~V~~  390 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSNF--SVCGYDVYKPTLVR----FENAG-----GLA--GNSPAEVAKDVDVLVIMVAN  390 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH----HHHcC-----Cee--cCCHHHHHhcCCEEEEecCC
Confidence            4789999999999999999999986  89999999876653    33221     112  2344 678899999999754


Q ss_pred             C
Q 018760          116 R  116 (350)
Q Consensus       116 ~  116 (350)
                      +
T Consensus       391 ~  391 (1378)
T PLN02858        391 E  391 (1378)
T ss_pred             h
Confidence            3

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.40  E-value=0.04  Score=55.08  Aligned_cols=108  Identities=17%  Similarity=0.265  Sum_probs=63.5

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc-cchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA-DKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~-~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      +.++|.|+|+|.+|..+|..|+..|.  +|+++|.+. +.++....++..     ...++...... +...++|+||.++
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~d~vv~~~   76 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGE-----LGIELVLGEYPEEFLEGVDLVVVSP   76 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHh-----cCCEEEeCCcchhHhhcCCEEEECC
Confidence            35689999999999999999999996  999999975 323222222221     12334322222 3457899999998


Q ss_pred             CCCcCccccHHHH-HHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          114 GARQIAGESRLNL-LQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       114 g~~~~~g~~r~~~-~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |.+..  -.-... -.++++++...+.......  ..+|-+|
T Consensus        77 g~~~~--~~~~~~a~~~~i~~~~~~~~~~~~~~--~~vI~IT  114 (450)
T PRK14106         77 GVPLD--SPPVVQAHKKGIEVIGEVELAYRFSK--APIVAIT  114 (450)
T ss_pred             CCCCC--CHHHHHHHHCCCcEEeHHHHHHhhcC--CCEEEEe
Confidence            86422  111111 2245666555544333222  3345554

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=96.39  E-value=0.052  Score=51.92  Aligned_cols=138  Identities=15%  Similarity=0.169  Sum_probs=77.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEE-EEeCCc-cchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELA-LVDAKA-DKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~-L~D~~~-~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      ++||+|+|.|++|...+..+...+-. ||+ ++|+++ +++.       ..      ..+..+.+. +.+.++|+|++|.
T Consensus         3 kIRVgIVG~GnIGr~~a~al~~~pd~-ELVgV~dr~~~~~~~-------~~------~~v~~~~d~~e~l~~iDVViIct   68 (324)
T TIGR01921         3 KIRAAIVGYGNLGRSVEKAIQQQPDM-ELVGVFSRRGAETLD-------TE------TPVYAVADDEKHLDDVDVLILCM   68 (324)
T ss_pred             CcEEEEEeecHHHHHHHHHHHhCCCc-EEEEEEcCCcHHHHh-------hc------CCccccCCHHHhccCCCEEEEcC
Confidence            48999999999999998888776433 554 679885 3221       11      123323344 4568899999995


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEE--EEcCCcchHHH--HHHHHh-CCCCCcEeeecCCccHHHHH
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILL--IVANPVDILTY--VAWKLS-GLPSNRVIGSGTNLDSSRFR  188 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~vi--v~tNP~~~~~~--~~~~~s-g~~~~rviG~g~~ld~~r~~  188 (350)
                      +...     ..       +....+    -+...+.+.-  .-.++.+....  .+.+.. +.   -+++.|-+.....+.
T Consensus        69 Ps~t-----h~-------~~~~~~----L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~v---svi~~GwDPG~~si~  129 (324)
T TIGR01921        69 GSAT-----DI-------PEQAPY----FAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNV---SVISTGWDPGMFSIN  129 (324)
T ss_pred             CCcc-----CH-------HHHHHH----HHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCE---EEEECCCCcChHHHH
Confidence            4321     11       222222    1223332110  01111111111  122322 22   466777777777788


Q ss_pred             HHHHHHcCCCCcceEEEEEee
Q 018760          189 FLLADHLDVNAQDVQAYIVGE  209 (350)
Q Consensus       189 ~~la~~l~v~p~~v~~~v~G~  209 (350)
                      +.+++.+  -|+-.....||.
T Consensus       130 r~~~ea~--lp~g~~yt~wG~  148 (324)
T TIGR01921       130 RVYGEAV--LPKGQTYTFWGP  148 (324)
T ss_pred             HHHHhcc--CCCCcceeccCC
Confidence            8888876  777777778984

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PLN02214 cinnamoyl-CoA reductase

Probab=96.38  E-value=0.028  Score=54.18  Aligned_cols=110  Identities=15%  Similarity=0.211  Sum_probs=68.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHH-HHHHHHHhhcCCCceEEEc--CC---c-cccCCCC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGE-MLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSD  107 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~-~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aD  107 (350)
                      ++++|.|+|+ |.+|++++..|+..|.  +|+.++++.++.... ...+...   .....+...  ++   . ++++++|
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~d   83 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGG---KERLILCKADLQDYEALKAAIDGCD   83 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCC---CCcEEEEecCcCChHHHHHHHhcCC
Confidence            3468999999 9999999999999985  899999876543211 1111110   011222211  12   2 3578899


Q ss_pred             EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +||.+++...   ....+.+..|+.-...+.+.+.+....- +|++|
T Consensus        84 ~Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~r-~V~~S  126 (342)
T PLN02214         84 GVFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVKR-VVITS  126 (342)
T ss_pred             EEEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCCE-EEEec
Confidence            9999987432   1234556667777788888777764333 44443

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.36  E-value=0.021  Score=53.50  Aligned_cols=132  Identities=17%  Similarity=0.233  Sum_probs=80.1

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh---hc-C---CCceEEEcCC--cccc
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA---AF-L---PRTKILASVD--YAVT  103 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~---~~-~---~~~~v~~t~~--~~al  103 (350)
                      ......|.|.|+ +.+|+.+|..+++.+.  .++|.|+|.+-.+..+..+++..   .+ +   ..-++..+.+  .++.
T Consensus        35 ~v~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~  112 (300)
T KOG1201|consen   35 SVSGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEV  112 (300)
T ss_pred             hccCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            334557888898 5889999999999995  89999999987766666666531   11 0   0111111111  1456


Q ss_pred             CCCCEEEEecCCC-cCcc--ccHHHH---HHh----hHHHHHHHHhhhhccCCCeEEEEEc-----CCcchHHHHHHHH
Q 018760          104 AGSDLCIVTAGAR-QIAG--ESRLNL---LQR----NLSLFKAIIPPLVKYSPDCILLIVA-----NPVDILTYVAWKL  167 (350)
Q Consensus       104 ~~aDiVIi~~g~~-~~~g--~~r~~~---~~~----n~~i~~~i~~~i~~~~p~a~viv~t-----NP~~~~~~~~~~~  167 (350)
                      .+.|++|+.||.- .++.  .++.++   +.-    -..+.+.+.+.|.+.+...+|-+.|     -|.....|-..|+
T Consensus       113 G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~g~~gl~~YcaSK~  191 (300)
T KOG1201|consen  113 GDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLFGPAGLADYCASKF  191 (300)
T ss_pred             CCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcccCCccchhhhhhHH
Confidence            8899999998853 3332  222221   112    2567888999999866444443333     2344445555544

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.36  E-value=0.077  Score=49.19  Aligned_cols=66  Identities=24%  Similarity=0.341  Sum_probs=44.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccCCCCEEEEec
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTAGSDLCIVTA  113 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~~aDiVIi~~  113 (350)
                      +|||+|+|+ |.||..++..+...+-+.-+.++|.++++....       .    ...+..++|++ .++++|+||.+.
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-------~----~~~i~~~~dl~~ll~~~DvVid~t   68 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-------G----ALGVAITDDLEAVLADADVLIDFT   68 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-------C----CCCccccCCHHHhccCCCEEEECC
Confidence            479999999 999999998877654333345689888765421       1    11233345664 467899999764

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=96.36  E-value=0.032  Score=53.61  Aligned_cols=107  Identities=21%  Similarity=0.355  Sum_probs=63.7

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhc-CCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc---CC---c-cccCCCC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQ-DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS---VD---Y-AVTAGSD  107 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~-~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t---~~---~-~al~~aD  107 (350)
                      +|||.|+|| |.+|+.++..|+.. +.  +|+.+|++.++..    .+...    ...++...   .+   . +.++++|
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~~~~----~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~d   70 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTDRLG----DLVNH----PRMHFFEGDITINKEWIEYHVKKCD   70 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHHHHH----HhccC----CCeEEEeCCCCCCHHHHHHHHcCCC
Confidence            368999998 99999999999876 43  8999998654322    11110    11222211   12   1 2457899


Q ss_pred             EEEEecCCCc--CccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          108 LCIVTAGARQ--IAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       108 iVIi~~g~~~--~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +||-+++...  ............|+.-...+++.+.+..  ..+|.+|.
T Consensus        71 ~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS  118 (347)
T PRK11908         71 VILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST  118 (347)
T ss_pred             EEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEec
Confidence            9998875432  1122223344556666667777777654  34555543

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.35  E-value=0.016  Score=56.67  Aligned_cols=34  Identities=24%  Similarity=0.542  Sum_probs=31.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      ..||+|||+|.+|+.++..|+..|+ .+|+|+|.|
T Consensus        41 ~~~VliiG~GglG~~v~~~La~~Gv-g~i~ivD~D   74 (370)
T PRK05600         41 NARVLVIGAGGLGCPAMQSLASAGV-GTITLIDDD   74 (370)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCC
Confidence            4689999999999999999999996 699999976

>PLN02858 fructose-bisphosphate aldolase

Probab=96.35  E-value=0.014  Score=66.00  Aligned_cols=65  Identities=8%  Similarity=0.170  Sum_probs=50.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ..||++||.|.||..+|..|+..|.  +|..+|+++++.+.    +....     ..+  ..+. +..++||+||++..
T Consensus         4 ~~~IGfIGLG~MG~~mA~~L~~~G~--~v~v~dr~~~~~~~----l~~~G-----a~~--~~s~~e~a~~advVi~~l~   69 (1378)
T PLN02858          4 AGVVGFVGLDSLSFELASSLLRSGF--KVQAFEISTPLMEK----FCELG-----GHR--CDSPAEAAKDAAALVVVLS   69 (1378)
T ss_pred             CCeEEEEchhHHHHHHHHHHHHCCC--eEEEEcCCHHHHHH----HHHcC-----Cee--cCCHHHHHhcCCEEEEEcC
Confidence            4589999999999999999999985  89999999877653    33321     122  2344 66889999999964

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=96.34  E-value=0.02  Score=50.96  Aligned_cols=34  Identities=26%  Similarity=0.634  Sum_probs=31.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      ..||+|+|+|.+|+.++..|+..|+ ++++|+|-+
T Consensus        19 ~s~VlviG~gglGsevak~L~~~GV-g~i~lvD~d   52 (198)
T cd01485          19 SAKVLIIGAGALGAEIAKNLVLAGI-DSITIVDHR   52 (198)
T ss_pred             hCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEECC
Confidence            4699999999999999999999997 689999965

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK07814 short chain dehydrogenase; Provisional

Probab=96.32  E-value=0.064  Score=49.31  Aligned_cols=115  Identities=16%  Similarity=0.211  Sum_probs=67.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----------  102 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----------  102 (350)
                      +.+++.|+|+ |.+|..++..|+..|.  +|+++++++++++....++....   ....+...  ++.+.          
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~   83 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAAG---RRAHVVAADLAHPEATAGLAGQAVE   83 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            4568999998 8999999999999885  99999999877665544443211   11122111  12222          


Q ss_pred             -cCCCCEEEEecCCCcCc---ccc---HHHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 -TAGSDLCIVTAGARQIA---GES---RLNLLQRNL----SLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 -l~~aDiVIi~~g~~~~~---g~~---r~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                       +...|+||.++|.....   ..+   -...+..|.    .+.+...+.+.+..+.+.+++++.
T Consensus        84 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS  147 (263)
T PRK07814         84 AFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISS  147 (263)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEcc
Confidence             23679999998753211   111   122233343    344444444544445566666664

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=96.31  E-value=0.032  Score=58.79  Aligned_cols=130  Identities=18%  Similarity=0.290  Sum_probs=77.8

Q ss_pred             Cccchhhhhhcc----ccCCCCCCCCCCCCeEEEEcC-ChhHHHHHHHHHhc-CCCCeEEEEeCCccchHHHHHHHHHHh
Q 018760           13 GGLDLTQTFFKP----INHAAPPSPTKRHTKISVIGT-GNVGMAIAQTILTQ-DFVEELALVDAKADKLRGEMLDLQHAA   86 (350)
Q Consensus        13 ~~~~~~~~~~~~----~~~~~~~~~~~~~~KI~IIGA-G~vG~~~a~~l~~~-~~~~ev~L~D~~~~~l~~~~~dl~~~~   86 (350)
                      +|-+|.+||.-.    | .+-|.-.-++.|||.|+|| |.+|++++..|+.. +.  +|+.+|++.....    .+... 
T Consensus       288 ~~~~~~~g~~~~~g~~~-~~~~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~~~----~~~~~-  359 (660)
T PRK08125        288 QGSQLAQELGLVAGARL-NSKPACSAKRRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDAIS----RFLGH-  359 (660)
T ss_pred             CHHHHhcCCCCCCCCEe-cccchhhhhcCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchhhh----hhcCC-
Confidence            445666665311    1 2222234456789999998 99999999999975 54  9999998764322    11100 


Q ss_pred             hcCCCceEEEc--CC----c-cccCCCCEEEEecCCCc--CccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760           87 AFLPRTKILAS--VD----Y-AVTAGSDLCIVTAGARQ--IAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus        87 ~~~~~~~v~~t--~~----~-~al~~aDiVIi~~g~~~--~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                         ...++...  +|    . ++++++|+||-+++...  .......+.+..|+.-...+.+.+.++. . .+|.+|.
T Consensus       360 ---~~~~~~~gDl~d~~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~-~~V~~SS  432 (660)
T PRK08125        360 ---PRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-K-RIIFPST  432 (660)
T ss_pred             ---CceEEEeccccCcHHHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-C-eEEEEcc
Confidence               11222211  01    1 24679999999876432  1222344566678888888888888765 2 3444543

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=96.31  E-value=0.02  Score=55.28  Aligned_cols=76  Identities=13%  Similarity=0.210  Sum_probs=49.1

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCC
Q 018760           35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSD  107 (350)
Q Consensus        35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aD  107 (350)
                      ...|||.|+|+ |.+|++++..|++.|.  +|++++++.++......++..    .....+...  ++   . +.+++.|
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~~d   81 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKE----GDRLRLFRADLQEEGSFDEAVKGCD   81 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhcc----CCeEEEEECCCCCHHHHHHHHcCCC
Confidence            34579999998 9999999999999985  899888876544322212211    012222211  12   1 3467899


Q ss_pred             EEEEecCCC
Q 018760          108 LCIVTAGAR  116 (350)
Q Consensus       108 iVIi~~g~~  116 (350)
                      +||.+++..
T Consensus        82 ~Vih~A~~~   90 (353)
T PLN02896         82 GVFHVAASM   90 (353)
T ss_pred             EEEECCccc
Confidence            999998753

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.29  E-value=0.047  Score=55.50  Aligned_cols=107  Identities=15%  Similarity=0.161  Sum_probs=64.7

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh-cCC-Cce------EE-EcCCc----
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA-FLP-RTK------IL-ASVDY----  100 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~-~~~-~~~------v~-~t~~~----  100 (350)
                      ..++.||+|+|+|.+|...+..+...|.  +|+.+|+++++++ .+..+--... ... ...      +. .+.++    
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle-~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~  238 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA--IVRAFDTRPEVAE-QVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAE  238 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHH-HHHHcCCeEEEeccccccccccchhhhcchhHHHHH
Confidence            3457899999999999998888888885  7999999998876 3333311000 000 000      00 01121    


Q ss_pred             -----cccCCCCEEEEecCCCcCccccHHHHHHhhHHH-HHHHHhhhhccCCCeEEEEEcCC
Q 018760          101 -----AVTAGSDLCIVTAGARQIAGESRLNLLQRNLSL-FKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       101 -----~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i-~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                           +.++++|+||.|++.|.++.-          .. .++..+.   ..|.++++.++.+
T Consensus       239 ~~~~~~~~~gaDVVIetag~pg~~aP----------~lit~~~v~~---mkpGgvIVdvg~~  287 (509)
T PRK09424        239 MALFAEQAKEVDIIITTALIPGKPAP----------KLITAEMVAS---MKPGSVIVDLAAE  287 (509)
T ss_pred             HHHHHhccCCCCEEEECCCCCcccCc----------chHHHHHHHh---cCCCCEEEEEccC
Confidence                 113689999999987653210          11 1333333   3578888888764

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.28  E-value=0.014  Score=55.21  Aligned_cols=76  Identities=20%  Similarity=0.374  Sum_probs=55.8

Q ss_pred             CCCCeEEEEcCC-hhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           35 KRHTKISVIGTG-NVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        35 ~~~~KI~IIGAG-~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      .+..+|+|||.| .||.+++..|+..+.  .|++++....                         +. +..+.||+||.+
T Consensus       157 l~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t~-------------------------~l~e~~~~ADIVIsa  209 (301)
T PRK14194        157 LTGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRST-------------------------DAKALCRQADIVVAA  209 (301)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCCC-------------------------CHHHHHhcCCEEEEe
Confidence            345799999995 999999999999985  8999876432                         33 456889999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc-CCc
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA-NPV  157 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t-NP~  157 (350)
                      .|.+..   -..++                 ..|.+++|.++ |++
T Consensus       210 vg~~~~---v~~~~-----------------ik~GaiVIDvgin~~  235 (301)
T PRK14194        210 VGRPRL---IDADW-----------------LKPGAVVIDVGINRI  235 (301)
T ss_pred             cCChhc---ccHhh-----------------ccCCcEEEEeccccc
Confidence            886531   11111                 46889999887 654

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.27  E-value=0.053  Score=56.71  Aligned_cols=135  Identities=14%  Similarity=0.239  Sum_probs=82.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----cccCCCCEE
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----AVTAGSDLC  109 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----~al~~aDiV  109 (350)
                      ..+|.|+|.|.+|+.++..|...+.  +++++|.|+++.+.    +.+.     ..++...  ++.     ..+++||.|
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~--~vvvID~d~~~v~~----~~~~-----g~~v~~GDat~~~~L~~agi~~A~~v  468 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV--KMTVLDHDPDHIET----LRKF-----GMKVFYGDATRMDLLESAGAAKAEVL  468 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC--CEEEEECCHHHHHH----HHhc-----CCeEEEEeCCCHHHHHhcCCCcCCEE
Confidence            4689999999999999999999886  89999999987763    3221     1233321  222     247899999


Q ss_pred             EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc-CCcchHHHHHHHHhCCCCCcEeeecCCccHHHHH
Q 018760          110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA-NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFR  188 (350)
Q Consensus       110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t-NP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~  188 (350)
                      |++...+           ..|..    ++..+++..|+..++.-+ |+.+  .+.+ +..|.  +.++-- +...+.++.
T Consensus       469 vv~~~d~-----------~~n~~----i~~~ar~~~p~~~iiaRa~d~~~--~~~L-~~~Ga--d~v~~e-~~e~sl~l~  527 (621)
T PRK03562        469 INAIDDP-----------QTSLQ----LVELVKEHFPHLQIIARARDVDH--YIRL-RQAGV--EKPERE-TFEGALKSG  527 (621)
T ss_pred             EEEeCCH-----------HHHHH----HHHHHHHhCCCCeEEEEECCHHH--HHHH-HHCCC--CEEehh-hHhHHHHHH
Confidence            9995321           12333    344555667886655544 4422  2222 23343  344422 333345566


Q ss_pred             HHHHHHcCCCCcceE
Q 018760          189 FLLADHLDVNAQDVQ  203 (350)
Q Consensus       189 ~~la~~l~v~p~~v~  203 (350)
                      +.+-+.+|+++++++
T Consensus       528 ~~~L~~lg~~~~~~~  542 (621)
T PRK03562        528 RLVLESLGLGPYEAR  542 (621)
T ss_pred             HHHHHHcCCCHHHHH
Confidence            666778887775543

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=96.26  E-value=0.034  Score=53.77  Aligned_cols=68  Identities=21%  Similarity=0.331  Sum_probs=45.3

Q ss_pred             CeEEEEcCChh--------------------HHHHHHHHHhcCCCCeEEEEeCCccchHHHH-HHHHHHhhcCCCceEEE
Q 018760           38 TKISVIGTGNV--------------------GMAIAQTILTQDFVEELALVDAKADKLRGEM-LDLQHAAAFLPRTKILA   96 (350)
Q Consensus        38 ~KI~IIGAG~v--------------------G~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~-~dl~~~~~~~~~~~v~~   96 (350)
                      |||+|-|||+=                    |.++|..|+..|.  +|+++|+++++++... ..+..     ...++  
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~--~V~v~Dr~~~~l~~~~~~~l~~-----~Gi~~--   71 (342)
T PRK12557          1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGH--DVVLAEPNRSILSEELWKKVED-----AGVKV--   71 (342)
T ss_pred             CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCC--eEEEEECCHHHhhHHHHHHHHH-----CCCEE--
Confidence            67888888752                    6778888888885  8999999887543211 11221     12233  


Q ss_pred             cCCc-cccCCCCEEEEecC
Q 018760           97 SVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        97 t~~~-~al~~aDiVIi~~g  114 (350)
                      +++. +++++||+||++..
T Consensus        72 asd~~eaa~~ADvVIlaVP   90 (342)
T PRK12557         72 VSDDAEAAKHGEIHILFTP   90 (342)
T ss_pred             eCCHHHHHhCCCEEEEECC
Confidence            3344 67899999999953

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.22  E-value=0.064  Score=55.88  Aligned_cols=135  Identities=11%  Similarity=0.195  Sum_probs=82.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEE-Ec-CC---c--cccCCCCEE
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKIL-AS-VD---Y--AVTAGSDLC  109 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~-~t-~~---~--~al~~aDiV  109 (350)
                      ..+|.|+|.|.+|+.++..|...+.  +++++|.|+++.+.    +++.     ..++. .. ++   .  ..+.+||.|
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~--~vvvID~d~~~v~~----~~~~-----g~~v~~GDat~~~~L~~agi~~A~~v  468 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKM--RITVLERDISAVNL----MRKY-----GYKVYYGDATQLELLRAAGAEKAEAI  468 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCC--CEEEEECCHHHHHH----HHhC-----CCeEEEeeCCCHHHHHhcCCccCCEE
Confidence            4689999999999999999998886  89999999987663    3321     11222 21 12   1  247899999


Q ss_pred             EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEE-cCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHH
Q 018760          110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV-ANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFR  188 (350)
Q Consensus       110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~-tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~  188 (350)
                      |++.+.+           ..|.    .++..+++++|+..++.- .||.+.  +.+ +..|.  +.|+-= +..-+..+.
T Consensus       469 v~~~~d~-----------~~n~----~i~~~~r~~~p~~~IiaRa~~~~~~--~~L-~~~Ga--~~vv~e-~~es~l~l~  527 (601)
T PRK03659        469 VITCNEP-----------EDTM----KIVELCQQHFPHLHILARARGRVEA--HEL-LQAGV--TQFSRE-TFSSALELG  527 (601)
T ss_pred             EEEeCCH-----------HHHH----HHHHHHHHHCCCCeEEEEeCCHHHH--HHH-HhCCC--CEEEcc-HHHHHHHHH
Confidence            9995421           1233    345556677888765544 455433  222 22343  344311 222234455


Q ss_pred             HHHHHHcCCCCcceE
Q 018760          189 FLLADHLDVNAQDVQ  203 (350)
Q Consensus       189 ~~la~~l~v~p~~v~  203 (350)
                      ...-..+|++++++.
T Consensus       528 ~~~L~~lg~~~~~~~  542 (601)
T PRK03659        528 RKTLVSLGMHPHQAQ  542 (601)
T ss_pred             HHHHHHcCCCHHHHH
Confidence            556677888887664

>PLN02583 cinnamoyl-CoA reductase

Probab=96.22  E-value=0.14  Score=48.13  Aligned_cols=105  Identities=10%  Similarity=0.138  Sum_probs=61.6

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCCEE
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSDLC  109 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aDiV  109 (350)
                      .++|+|+|| |.+|+.++..|++.|.  +|++++++.+..+ ....+...........+...  +|   . +++.++|.|
T Consensus         6 ~k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~-~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d~v   82 (297)
T PLN02583          6 SKSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETE-IEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCSGL   82 (297)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhh-HHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCCEE
Confidence            458999998 9999999999999985  8998887543221 11111111100011222211  12   2 468899999


Q ss_pred             EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc
Q 018760          110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY  144 (350)
Q Consensus       110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~  144 (350)
                      +.+++.+........+++..|+.-...+.+.+.+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~  117 (297)
T PLN02583         83 FCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQT  117 (297)
T ss_pred             EEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhc
Confidence            86654332111112355667777777777777665

>PRK05866 short chain dehydrogenase; Provisional

Probab=96.22  E-value=0.1  Score=49.04  Aligned_cols=75  Identities=20%  Similarity=0.263  Sum_probs=50.9

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc-----------c
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA-----------V  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~-----------a  102 (350)
                      .++|.|+|| |.+|..++..|++.|.  +|+++++++++++.....+....   ....+...  +|.+           .
T Consensus        40 ~k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~~~l~~~~~~l~~~~---~~~~~~~~Dl~d~~~v~~~~~~~~~~  114 (293)
T PRK05866         40 GKRILLTGASSGIGEAAAEQFARRGA--TVVAVARREDLLDAVADRITRAG---GDAMAVPCDLSDLDAVDALVADVEKR  114 (293)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            467999998 9999999999999985  99999999887765554543211   11111111  1111           1


Q ss_pred             cCCCCEEEEecCCC
Q 018760          103 TAGSDLCIVTAGAR  116 (350)
Q Consensus       103 l~~aDiVIi~~g~~  116 (350)
                      +...|+||.++|..
T Consensus       115 ~g~id~li~~AG~~  128 (293)
T PRK05866        115 IGGVDILINNAGRS  128 (293)
T ss_pred             cCCCCEEEECCCCC
Confidence            23789999998764

>PRK12939 short chain dehydrogenase; Provisional

Probab=96.21  E-value=0.077  Score=47.93  Aligned_cols=75  Identities=25%  Similarity=0.283  Sum_probs=51.1

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------  102 (350)
                      .++|.|+|+ |.+|..++..|++.|.  +|++++++++++.....+++...   ....+...  ++.+.           
T Consensus         7 ~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~   81 (250)
T PRK12939          7 GKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG---GRAHAIAADLADPASVQRFFDAAAAA   81 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            468999998 9999999999999885  89999998877765555554321   11222211  12111           


Q ss_pred             cCCCCEEEEecCCC
Q 018760          103 TAGSDLCIVTAGAR  116 (350)
Q Consensus       103 l~~aDiVIi~~g~~  116 (350)
                      +...|+||.++|..
T Consensus        82 ~~~id~vi~~ag~~   95 (250)
T PRK12939         82 LGGLDGLVNNAGIT   95 (250)
T ss_pred             cCCCCEEEECCCCC
Confidence            14689999998764

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.21  E-value=0.029  Score=51.20  Aligned_cols=36  Identities=28%  Similarity=0.518  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      +..||+|+|+|.+|+.++..|+..|+ .+++|+|-|.
T Consensus        10 ~~~~VlVvG~GGvGs~va~~Lar~GV-g~i~LvD~D~   45 (231)
T cd00755          10 RNAHVAVVGLGGVGSWAAEALARSGV-GKLTLIDFDV   45 (231)
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCE
Confidence            34689999999999999999999997 6999999753

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.19  E-value=0.03  Score=52.45  Aligned_cols=120  Identities=19%  Similarity=0.283  Sum_probs=82.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------c
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------A  101 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~  101 (350)
                      ..+.|.|.|| ..+|.++|+.++..|.  .++|+.+..++++.+..++....+.. +..+...  +|.           .
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~-~v~~~~~Dvs~~~~~~~~~~~~~~   87 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLE-KVLVLQLDVSDEESVKKFVEWAIR   87 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcC-ccEEEeCccCCHHHHHHHHHHHHH
Confidence            4456778899 7999999999999996  89999999999987767777654321 1111111  111           2


Q ss_pred             ccCCCCEEEEecCCCcCccc----c---HHHHHH----hhHHHHHHHHhhhhccCCCeEEEEEcCCcchH
Q 018760          102 VTAGSDLCIVTAGARQIAGE----S---RLNLLQ----RNLSLFKAIIPPLVKYSPDCILLIVANPVDIL  160 (350)
Q Consensus       102 al~~aDiVIi~~g~~~~~g~----~---r~~~~~----~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~  160 (350)
                      .+.+.|++|+.+|..+ .+.    +   ....+.    ..+..-+...+.|.+-+ ++.|++++...+.+
T Consensus        88 ~fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~  155 (282)
T KOG1205|consen   88 HFGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKM  155 (282)
T ss_pred             hcCCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEecccccc
Confidence            3578999999999876 321    1   112232    34778888899999877 78888887666553

>PRK08643 acetoin reductase; Validated

Probab=96.19  E-value=0.08  Score=48.24  Aligned_cols=113  Identities=15%  Similarity=0.206  Sum_probs=65.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc-----------cc
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA-----------VT  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~-----------al  103 (350)
                      +++.|+|+ |.+|..++..|++.|.  +|+++|+++++++....++.+..   ........  ++.+           .+
T Consensus         3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~   77 (256)
T PRK08643          3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDG---GKAIAVKADVSDRDQVFAAVRQVVDTF   77 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            47888998 9999999999999985  89999998877765555554321   11111111  1111           12


Q ss_pred             CCCCEEEEecCCCc-Ccc--ccH---HHHHHhhHH----HHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 AGSDLCIVTAGARQ-IAG--ESR---LNLLQRNLS----LFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 ~~aDiVIi~~g~~~-~~g--~~r---~~~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ...|+||.++|... .+-  .+.   ...+..|..    +.+.+.+.+.+..+++.++++|-
T Consensus        78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS  139 (256)
T PRK08643         78 GDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATS  139 (256)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECc
Confidence            36799999987532 111  111   122333432    34444455544444566777764

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=96.19  E-value=0.068  Score=52.61  Aligned_cols=112  Identities=13%  Similarity=0.272  Sum_probs=64.0

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHH--HHHHHHHhhcCCCceEEEc--CCc----cccC
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGE--MLDLQHAAAFLPRTKILAS--VDY----AVTA  104 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~--~~dl~~~~~~~~~~~v~~t--~~~----~al~  104 (350)
                      +.+.+||.|+|| |.+|+.++..|+..+.  +|++++++..++...  ..++...   .+...+...  +|.    +.++
T Consensus        57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~---~~~v~~v~~Dl~d~~~l~~~~~  131 (390)
T PLN02657         57 EPKDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKE---LPGAEVVFGDVTDADSLRKVLF  131 (390)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhh---cCCceEEEeeCCCHHHHHHHHH
Confidence            445679999999 9999999999999885  899999987544211  1111111   112222221  122    2344


Q ss_pred             ----CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          105 ----GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       105 ----~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                          ++|+||.+++.+.....   +....|......+.+.+++..-.- +|.+|
T Consensus       132 ~~~~~~D~Vi~~aa~~~~~~~---~~~~vn~~~~~~ll~aa~~~gv~r-~V~iS  181 (390)
T PLN02657        132 SEGDPVDVVVSCLASRTGGVK---DSWKIDYQATKNSLDAGREVGAKH-FVLLS  181 (390)
T ss_pred             HhCCCCcEEEECCccCCCCCc---cchhhHHHHHHHHHHHHHHcCCCE-EEEEe
Confidence                58999998764321111   122335555566666666654333 44444

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=96.18  E-value=0.042  Score=50.23  Aligned_cols=115  Identities=19%  Similarity=0.161  Sum_probs=65.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcccc---------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAVT---------  103 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~al---------  103 (350)
                      +.++|.|+|+ |.+|+.++..|+..|.  +|++++++.++++....++....   ....+...  +|.+.+         
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~---~~~~~~~~Dl~d~~~i~~~~~~~~~   85 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEALG---IDALWIAADVADEADIERLAEETLE   85 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEccCCCHHHHHHHHHHHHH
Confidence            3468999998 9999999999999885  89999998877664444443211   11111111  122222         


Q ss_pred             --CCCCEEEEecCCCcCc---ccc---HHHHHHhhHHHHHHHHhhhhcc----CCCeEEEEEcC
Q 018760          104 --AGSDLCIVTAGARQIA---GES---RLNLLQRNLSLFKAIIPPLVKY----SPDCILLIVAN  155 (350)
Q Consensus       104 --~~aDiVIi~~g~~~~~---g~~---r~~~~~~n~~i~~~i~~~i~~~----~p~a~viv~tN  155 (350)
                        ...|.||.++|.....   ..+   -...+..|..-...+.+.+.++    .+.+.++++|.
T Consensus        86 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS  149 (259)
T PRK08213         86 RFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS  149 (259)
T ss_pred             HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence              3579999998753211   111   1223445555444444444332    23455666654

>PRK06436 glycerate dehydrogenase; Provisional

Probab=96.17  E-value=0.022  Score=54.11  Aligned_cols=94  Identities=15%  Similarity=0.236  Sum_probs=59.4

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      -..++|+|||.|++|+.+|..+..-|.  +|+.+|++... .          .    .... ..+. +.++.||+|+++.
T Consensus       120 L~gktvgIiG~G~IG~~vA~~l~afG~--~V~~~~r~~~~-~----------~----~~~~-~~~l~ell~~aDiv~~~l  181 (303)
T PRK06436        120 LYNKSLGILGYGGIGRRVALLAKAFGM--NIYAYTRSYVN-D----------G----ISSI-YMEPEDIMKKSDFVLISL  181 (303)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC--EEEEECCCCcc-c----------C----cccc-cCCHHHHHhhCCEEEECC
Confidence            345799999999999999987766675  89999986421 0          0    0111 1245 5688999999986


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc--CCcch
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA--NPVDI  159 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NP~~~  159 (350)
                      ....   +++ .++  |       .+.+....|++++||++  .++|.
T Consensus       182 p~t~---~T~-~li--~-------~~~l~~mk~ga~lIN~sRG~~vd~  216 (303)
T PRK06436        182 PLTD---ETR-GMI--N-------SKMLSLFRKGLAIINVARADVVDK  216 (303)
T ss_pred             CCCc---hhh-cCc--C-------HHHHhcCCCCeEEEECCCccccCH
Confidence            4221   111 111  1       23334446889999997  44444

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=96.17  E-value=0.0094  Score=55.75  Aligned_cols=69  Identities=17%  Similarity=0.231  Sum_probs=45.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhc-CCCCeEE-EEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccCCCCEEEEe
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQ-DFVEELA-LVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTAGSDLCIVT  112 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~-~~~~ev~-L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~~aDiVIi~  112 (350)
                      +++||+|||+|.+|..++..|... +- -+|. ++|+++++.+.    +.....   ....  .++++ .+.++|+|+++
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~-~el~aV~dr~~~~a~~----~a~~~g---~~~~--~~~~eell~~~D~Vvi~   74 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPG-LTLSAVAVRDPQRHAD----FIWGLR---RPPP--VVPLDQLATHADIVVEA   74 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCC-eEEEEEECCCHHHHHH----HHHhcC---CCcc--cCCHHHHhcCCCEEEEC
Confidence            358999999999999999888764 21 2554 78998876543    222111   1112  23553 46789999999


Q ss_pred             cC
Q 018760          113 AG  114 (350)
Q Consensus       113 ~g  114 (350)
                      ++
T Consensus        75 tp   76 (271)
T PRK13302         75 AP   76 (271)
T ss_pred             CC
Confidence            74

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=96.17  E-value=0.13  Score=48.68  Aligned_cols=105  Identities=13%  Similarity=0.182  Sum_probs=61.6

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCCEE
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSDLC  109 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aDiV  109 (350)
                      .++|.|+|| |.+|++++..|++.|.  +|++..++.+..+. ...+...........+...  ++   . ++++++|+|
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v   81 (322)
T PLN02986          5 GKLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKK-TEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAV   81 (322)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHH-HHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEE
Confidence            468999998 9999999999999985  88877766654432 1122111100012222211  12   2 346789999


Q ss_pred             EEecCCCcC-ccccHHHHHHhhHHHHHHHHhhhhcc
Q 018760          110 IVTAGARQI-AGESRLNLLQRNLSLFKAIIPPLVKY  144 (350)
Q Consensus       110 Ii~~g~~~~-~g~~r~~~~~~n~~i~~~i~~~i~~~  144 (350)
                      |.+++.... ......+++..|+.-...+.+.+.+.
T Consensus        82 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~  117 (322)
T PLN02986         82 FHTASPVFFTVKDPQTELIDPALKGTINVLNTCKET  117 (322)
T ss_pred             EEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhc
Confidence            999874211 11122334555777677777766654

>PRK13529 malate dehydrogenase; Provisional

Probab=96.16  E-value=0.056  Score=55.08  Aligned_cols=133  Identities=16%  Similarity=0.246  Sum_probs=83.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHh----cCCC-----CeEEEEeCCc----cc--hHHHHHHHHHHhhcCCCceE-EEcCCc
Q 018760           37 HTKISVIGTGNVGMAIAQTILT----QDFV-----EELALVDAKA----DK--LRGEMLDLQHAAAFLPRTKI-LASVDY  100 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~----~~~~-----~ev~L~D~~~----~~--l~~~~~dl~~~~~~~~~~~v-~~t~~~  100 (350)
                      ..||++.|||+.|..+|..|+.    .|+-     ..++++|..-    ++  +......+.+.......... ....++
T Consensus       295 d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L  374 (563)
T PRK13529        295 DQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISL  374 (563)
T ss_pred             hcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCH
Confidence            4699999999999999988776    4653     5899999853    22  22222222221100000000 011344


Q ss_pred             -cccCCC--CEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc---hHHHHHHHHhCCCCCc
Q 018760          101 -AVTAGS--DLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD---ILTYVAWKLSGLPSNR  174 (350)
Q Consensus       101 -~al~~a--DiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~---~~~~~~~~~sg~~~~r  174 (350)
                       ++++++  |++|=+.+.+   |-           +-+++.+.|.++|++.+|.-.|||..   +..+-+++++.  -+.
T Consensus       375 ~e~v~~~kPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~--Gra  438 (563)
T PRK13529        375 LEVVRNVKPTVLIGVSGQP---GA-----------FTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTD--GRA  438 (563)
T ss_pred             HHHHhccCCCEEEEecCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhc--CCE
Confidence             678888  9888765433   21           12456778888899999999999985   45666777652  236


Q ss_pred             EeeecCCccHH
Q 018760          175 VIGSGTNLDSS  185 (350)
Q Consensus       175 viG~g~~ld~~  185 (350)
                      +|++|+-.+..
T Consensus       439 i~AtGspf~pv  449 (563)
T PRK13529        439 LVATGSPFAPV  449 (563)
T ss_pred             EEEECCCCCCe
Confidence            88998866643

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=96.16  E-value=0.022  Score=53.43  Aligned_cols=113  Identities=18%  Similarity=0.220  Sum_probs=70.0

Q ss_pred             EEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhc-CCCceEEEcCCc-cccCCCCEEEEecCCCc
Q 018760           41 SVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILASVDY-AVTAGSDLCIVTAGARQ  117 (350)
Q Consensus        41 ~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~-~~~~~v~~t~~~-~al~~aDiVIi~~g~~~  117 (350)
                      .|+|+ |.+|++++..|++.+...+|+.+|+.+....  ..++...... .....+.-..+. ++++++|+||-++....
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~--~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~   78 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKF--LKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVP   78 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEccccccccc--chhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccc
Confidence            37888 9999999999999986569999998764322  1112211100 001122211123 57999999999975322


Q ss_pred             Ccc-ccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc
Q 018760          118 IAG-ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV  157 (350)
Q Consensus       118 ~~g-~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~  157 (350)
                      -.+ .....+..-|+.=-+.+.+...+..-+  -+++|.-+
T Consensus        79 ~~~~~~~~~~~~vNV~GT~nvl~aa~~~~Vk--rlVytSS~  117 (280)
T PF01073_consen   79 PWGDYPPEEYYKVNVDGTRNVLEAARKAGVK--RLVYTSSI  117 (280)
T ss_pred             ccCcccHHHHHHHHHHHHHHHHHHHHHcCCC--EEEEEcCc
Confidence            222 345667777888888888888876544  34444333

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.16  E-value=0.035  Score=54.83  Aligned_cols=92  Identities=11%  Similarity=0.141  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecC
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAG  114 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g  114 (350)
                      ....+|+|+|+|.+|..++..+...|.  +|+.+|+++.+.....   .  ..    ..+.  +-.++++++|+||.+.|
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga--~ViV~d~dp~r~~~A~---~--~G----~~v~--~leeal~~aDVVItaTG  259 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGA--RVIVTEVDPIRALEAA---M--DG----FRVM--TMEEAAKIGDIFITATG  259 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcC--EEEEEeCChhhHHHHH---h--cC----CEeC--CHHHHHhcCCEEEECCC
Confidence            345699999999999999999888775  8999999987543111   1  11    1222  11256889999998865


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      .+               .++..  +.+....+.+++++++-+
T Consensus       260 ~~---------------~vI~~--~~~~~mK~GailiN~G~~  284 (406)
T TIGR00936       260 NK---------------DVIRG--EHFENMKDGAIVANIGHF  284 (406)
T ss_pred             CH---------------HHHHH--HHHhcCCCCcEEEEECCC
Confidence            22               22221  123334577889988753

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK07326 short chain dehydrogenase; Provisional

Probab=96.15  E-value=0.049  Score=48.89  Aligned_cols=45  Identities=20%  Similarity=0.420  Sum_probs=36.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      .++|.|+|| |.+|..++..|+..+.  +|++++++++++.....++.
T Consensus         6 ~~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~   51 (237)
T PRK07326          6 GKVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELN   51 (237)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHh
Confidence            367999998 9999999999998885  89999999877664444443

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=96.14  E-value=0.018  Score=58.94  Aligned_cols=96  Identities=10%  Similarity=0.108  Sum_probs=59.7

Q ss_pred             CCCccchhhhhhccccCCC-C--CCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh
Q 018760           11 GPGGLDLTQTFFKPINHAA-P--PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA   87 (350)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~   87 (350)
                      .-||.||...+.+.+.... .  +....+..++.|+|+|.+|+++++.|++.|.  +|++++++.++++..+..+.    
T Consensus       350 NTD~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~--~V~i~nR~~e~a~~la~~l~----  423 (529)
T PLN02520        350 NTDYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGA--RVVIANRTYERAKELADAVG----  423 (529)
T ss_pred             cccHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC----
Confidence            3578888888764322110 0  0112334689999999999999999999996  89999999877764433221    


Q ss_pred             cCCCceEEEcCCcc-c-cCCCCEEEEecCCC
Q 018760           88 FLPRTKILASVDYA-V-TAGSDLCIVTAGAR  116 (350)
Q Consensus        88 ~~~~~~v~~t~~~~-a-l~~aDiVIi~~g~~  116 (350)
                          .++....+.+ . ..++|+||.+....
T Consensus       424 ----~~~~~~~~~~~~~~~~~diiINtT~vG  450 (529)
T PLN02520        424 ----GQALTLADLENFHPEEGMILANTTSVG  450 (529)
T ss_pred             ----CceeeHhHhhhhccccCeEEEecccCC
Confidence                1122112222 1 24678888876443

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=96.11  E-value=0.0063  Score=54.67  Aligned_cols=106  Identities=17%  Similarity=0.263  Sum_probs=65.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHH----HHHHHHHhhcC----------CCceEEEcCCc-cc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGE----MLDLQHAAAFL----------PRTKILASVDY-AV  102 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~----~~dl~~~~~~~----------~~~~v~~t~~~-~a  102 (350)
                      .||+|+|.|-+|+..|..+++.|+  +|.||||.++.+.-.    ..++.+.....          ....|..|++. |.
T Consensus         4 ~ki~ivgSgl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~   81 (313)
T KOG2305|consen    4 GKIAIVGSGLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNEL   81 (313)
T ss_pred             cceeEeecccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHH
Confidence            599999999999999999999997  999999988655422    23333222110          11234445555 45


Q ss_pred             cCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHH
Q 018760          103 TAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILT  161 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~  161 (350)
                      .++|=.+=.|+              .+.....+++.+++.+. .|.  .|..|..+.++.
T Consensus        82 vk~Ai~iQEcv--------------pE~L~lkk~ly~qlD~i~d~~--tIlaSSTSt~mp  125 (313)
T KOG2305|consen   82 VKGAIHIQECV--------------PEDLNLKKQLYKQLDEIADPT--TILASSTSTFMP  125 (313)
T ss_pred             HhhhhhHHhhc--------------hHhhHHHHHHHHHHHHhcCCc--eEEeccccccCh
Confidence            66664433332              23455666777777776 455  344555554443

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=96.09  E-value=0.061  Score=49.10  Aligned_cols=116  Identities=14%  Similarity=0.141  Sum_probs=67.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------c
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------T  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------l  103 (350)
                      .+|.|+|+ |.+|..++..|++.+.  +|+++|++.++++.....+...... ........  ++.++           +
T Consensus         3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~i~~~~~~~~~~~   79 (259)
T PRK12384          3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGE-GMAYGFGADATSEQSVLALSRGVDEIF   79 (259)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCC-ceeEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46899999 8999999999999985  8999999887665544444332110 01111111  12111           2


Q ss_pred             CCCCEEEEecCCCcCc---cccHHH---HHHhhH----HHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          104 AGSDLCIVTAGARQIA---GESRLN---LLQRNL----SLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~---g~~r~~---~~~~n~----~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      ...|+||.++|.+...   ..+..+   .+..|+    .+.+.+.+.+.+..+++.++.+|..
T Consensus        80 ~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~  142 (259)
T PRK12384         80 GRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSK  142 (259)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCc
Confidence            3579999998764321   112222   223333    2455666666655545667776653

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.08  E-value=0.033  Score=55.27  Aligned_cols=90  Identities=12%  Similarity=0.189  Sum_probs=60.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ...+|+|+|+|.+|..++..+...|.  +|+++|+++.++....+     ..    .++.   +. ++++++|+||.+.|
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A~~-----~G----~~v~---~l~eal~~aDVVI~aTG  276 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLGA--RVIVTEVDPICALQAAM-----DG----FRVM---TMEEAAELGDIFVTATG  276 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEcCCchhhHHHHh-----cC----CEec---CHHHHHhCCCEEEECCC
Confidence            45699999999999999999998886  89999999876532111     11    1221   23 56889999999865


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      .+               .++.  ...+....+.+++++++-+
T Consensus       277 ~~---------------~vI~--~~~~~~mK~GailiNvG~~  301 (425)
T PRK05476        277 NK---------------DVIT--AEHMEAMKDGAILANIGHF  301 (425)
T ss_pred             CH---------------HHHH--HHHHhcCCCCCEEEEcCCC
Confidence            32               2222  1223334677888888743

>PRK07832 short chain dehydrogenase; Provisional

Probab=96.08  E-value=0.07  Score=49.30  Aligned_cols=44  Identities=32%  Similarity=0.383  Sum_probs=36.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      +++.|+|+ |.+|..++..|+..|.  +|++++++++.++....++.
T Consensus         1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~~~~~~~~~~~~   45 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADAR   45 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence            37899998 9999999999999885  79999998877665444554

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=96.07  E-value=0.023  Score=58.11  Aligned_cols=95  Identities=19%  Similarity=0.207  Sum_probs=59.9

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      -..++|+|||.|.+|+.+|..+...|.  +|+.+|.....-.  .   .+ .    .  +....+. +.+++||+|+++.
T Consensus       136 l~gktvgIiG~G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~---~~-~----g--~~~~~~l~ell~~aDvV~l~l  201 (525)
T TIGR01327       136 LYGKTLGVIGLGRIGSIVAKRAKAFGM--KVLAYDPYISPER--A---EQ-L----G--VELVDDLDELLARADFITVHT  201 (525)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEECCCCChhH--H---Hh-c----C--CEEcCCHHHHHhhCCEEEEcc
Confidence            345689999999999999999987775  8999998532111  1   11 1    1  1222345 5689999999986


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      ....   +        +..++-  .+.+....|.+++|+++--
T Consensus       202 Plt~---~--------T~~li~--~~~l~~mk~ga~lIN~aRG  231 (525)
T TIGR01327       202 PLTP---E--------TRGLIG--AEELAKMKKGVIIVNCARG  231 (525)
T ss_pred             CCCh---h--------hccCcC--HHHHhcCCCCeEEEEcCCC
Confidence            4221   1        111111  1334444688999999744

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK08267 short chain dehydrogenase; Provisional

Probab=96.07  E-value=0.015  Score=53.25  Aligned_cols=39  Identities=18%  Similarity=0.273  Sum_probs=33.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHH
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGE   78 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~   78 (350)
                      +++.|+|| |.+|..++..|++.|.  +|+++|++++.++..
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~   41 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAAL   41 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHH
Confidence            46999999 9999999999999985  899999988766543

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=96.05  E-value=0.016  Score=56.50  Aligned_cols=110  Identities=14%  Similarity=0.111  Sum_probs=67.0

Q ss_pred             CCCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCC
Q 018760           33 PTKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAG  105 (350)
Q Consensus        33 ~~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~  105 (350)
                      +..+.|||.|+|+ |.+|+.++..|...|.  +|+.+|+......      .... .  ...+...  ++   . +.+++
T Consensus        17 ~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~~~~------~~~~-~--~~~~~~~Dl~d~~~~~~~~~~   85 (370)
T PLN02695         17 WPSEKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKNEHM------SEDM-F--CHEFHLVDLRVMENCLKVTKG   85 (370)
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEecccccc------cccc-c--cceEEECCCCCHHHHHHHHhC
Confidence            3446689999999 9999999999999885  8999998543110      0000 0  0111111  11   1 23578


Q ss_pred             CCEEEEecCCCcCcc---ccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          106 SDLCIVTAGARQIAG---ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       106 aDiVIi~~g~~~~~g---~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +|+||.+++.....+   .........|+.....+++.+.+...+. +|.+|
T Consensus        86 ~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~-~V~~S  136 (370)
T PLN02695         86 VDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKR-FFYAS  136 (370)
T ss_pred             CCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCE-EEEeC
Confidence            999999975321000   1122345568888888888887765544 44444

>PRK07411 hypothetical protein; Validated

Probab=96.03  E-value=0.028  Score=55.40  Aligned_cols=35  Identities=20%  Similarity=0.422  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      +..||+|||+|.+|+.++..|+..|+ .+|+|+|-|
T Consensus        37 ~~~~VlivG~GGlG~~va~~La~~Gv-g~l~lvD~D   71 (390)
T PRK07411         37 KAASVLCIGTGGLGSPLLLYLAAAGI-GRIGIVDFD   71 (390)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCC-CEEEEECCC
Confidence            35699999999999999999999997 699999975

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.02  E-value=0.077  Score=50.98  Aligned_cols=95  Identities=23%  Similarity=0.266  Sum_probs=60.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc---cccCC-CCEE
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY---AVTAG-SDLC  109 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~---~al~~-aDiV  109 (350)
                      -++..+|+|+|+|.+|...++.....+  -+|+.+|+++++++ .+++|-      ...-+. +++.   +++++ +|++
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e-~a~~lG------Ad~~i~-~~~~~~~~~~~~~~d~i  233 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLE-LAKKLG------ADHVIN-SSDSDALEAVKEIADAI  233 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHH-HHHHhC------CcEEEE-cCCchhhHHhHhhCcEE
Confidence            344579999999988877666666567  49999999999876 233331      111222 2222   33333 9999


Q ss_pred             EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc
Q 018760          110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV  157 (350)
Q Consensus       110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~  157 (350)
                      |.+++ +.                  .+-..++-..+++.++.+.+|.
T Consensus       234 i~tv~-~~------------------~~~~~l~~l~~~G~~v~vG~~~  262 (339)
T COG1064         234 IDTVG-PA------------------TLEPSLKALRRGGTLVLVGLPG  262 (339)
T ss_pred             EECCC-hh------------------hHHHHHHHHhcCCEEEEECCCC
Confidence            99986 31                  1112223335789999999994

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=96.00  E-value=0.034  Score=55.77  Aligned_cols=92  Identities=12%  Similarity=0.210  Sum_probs=62.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      .....+|+|+|.|.+|..+|..+...|.  +|+.+|+++.+.....+   +      ..++.   +. +.++.||+||.+
T Consensus       251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A~~---~------G~~~~---~leell~~ADIVI~a  316 (476)
T PTZ00075        251 MIAGKTVVVCGYGDVGKGCAQALRGFGA--RVVVTEIDPICALQAAM---E------GYQVV---TLEDVVETADIFVTA  316 (476)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHh---c------Cceec---cHHHHHhcCCEEEEC
Confidence            3455699999999999999999988886  89999998765421111   1      11221   34 568999999998


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      .|.+.               ++.  .+.+....|.+++++++-.
T Consensus       317 tGt~~---------------iI~--~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        317 TGNKD---------------IIT--LEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             CCccc---------------ccC--HHHHhccCCCcEEEEcCCC
Confidence            65321               111  1234445789999999855

>PRK07774 short chain dehydrogenase; Provisional

Probab=96.00  E-value=0.11  Score=46.94  Aligned_cols=46  Identities=17%  Similarity=0.272  Sum_probs=36.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      +.+++.|+|+ |.+|..++..|++.|.  +|+++|++++.++....++.
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~   51 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINAEGAERVAKQIV   51 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence            3468999999 9999999999999985  89999998766554443443

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=96.00  E-value=0.025  Score=55.34  Aligned_cols=63  Identities=14%  Similarity=0.216  Sum_probs=44.7

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      .-..++|+|||.|+||+.++..+..-|.  +|..+|..... .       . .    .  .. ..+. +.++.||+|++.
T Consensus       113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~--~V~~~dp~~~~-~-------~-~----~--~~-~~~L~ell~~sDiI~lh  174 (378)
T PRK15438        113 SLHDRTVGIVGVGNVGRRLQARLEALGI--KTLLCDPPRAD-R-------G-D----E--GD-FRSLDELVQEADILTFH  174 (378)
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHCCC--EEEEECCcccc-c-------c-c----c--cc-cCCHHHHHhhCCEEEEe
Confidence            3456799999999999999999988786  99999964211 0       0 0    0  11 1245 457899999987


Q ss_pred             cC
Q 018760          113 AG  114 (350)
Q Consensus       113 ~g  114 (350)
                      ..
T Consensus       175 ~P  176 (378)
T PRK15438        175 TP  176 (378)
T ss_pred             CC
Confidence            54

>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein

Probab=95.99  E-value=0.071  Score=54.75  Aligned_cols=95  Identities=13%  Similarity=0.167  Sum_probs=61.5

Q ss_pred             hhhccccCCCCCCCCC-CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc--chHHHHHHHHH-HhhcCCCceEE
Q 018760           20 TFFKPINHAAPPSPTK-RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD--KLRGEMLDLQH-AAAFLPRTKIL   95 (350)
Q Consensus        20 ~~~~~~~~~~~~~~~~-~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~--~l~~~~~dl~~-~~~~~~~~~v~   95 (350)
                      -|+..|.+++.+.... +..||+|+|.|.+|+.++..|+..|+ .++..+|.|..  .+..+ .++.+ +..+.+..++.
T Consensus       111 ~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~-~~I~~vd~D~v~SNlnRI-gEl~e~A~~~n~~v~v~  188 (637)
T TIGR03693       111 EFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGF-PRFHAIVTDAEEHALDRI-HELAEIAEETDDALLVQ  188 (637)
T ss_pred             HHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCC-CcEEEEeccccchhhhHH-HHHHHHHHHhCCCCceE
Confidence            3777777888766555 45699999999999999999999997 57878866543  22211 12221 11122333222


Q ss_pred             E-----cCCc-cccCCCCEEEEecCCC
Q 018760           96 A-----SVDY-AVTAGSDLCIVTAGAR  116 (350)
Q Consensus        96 ~-----t~~~-~al~~aDiVIi~~g~~  116 (350)
                      .     +.+. +.+++.|+||..+..+
T Consensus       189 ~i~~~~~~dl~ev~~~~DiVi~vsDdy  215 (637)
T TIGR03693       189 EIDFAEDQHLHEAFEPADWVLYVSDNG  215 (637)
T ss_pred             eccCCcchhHHHhhcCCcEEEEECCCC
Confidence            1     1123 5689999999997543

Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=95.97  E-value=0.03  Score=55.16  Aligned_cols=35  Identities=20%  Similarity=0.427  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      +..||.|||+|.+|+.++..|+..|+ ++|+|+|-|
T Consensus        41 ~~~~VlviG~GGlGs~va~~La~~Gv-g~i~lvD~D   75 (392)
T PRK07878         41 KNARVLVIGAGGLGSPTLLYLAAAGV-GTLGIVEFD   75 (392)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHcCC-CeEEEECCC
Confidence            35699999999999999999999997 689999965

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=95.96  E-value=0.031  Score=51.10  Aligned_cols=33  Identities=18%  Similarity=0.556  Sum_probs=29.9

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      ||.|+|+|.+|+.++..|+..|+ ++++++|.|.
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gv-g~i~ivD~D~   33 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGF-GQIHVIDMDT   33 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            68999999999999999999997 6999999753

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.95  E-value=0.015  Score=58.05  Aligned_cols=67  Identities=22%  Similarity=0.476  Sum_probs=47.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cc-cCCCCEEE
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AV-TAGSDLCI  110 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~a-l~~aDiVI  110 (350)
                      |||.|+|+|.+|..++..|...+.  +++++|.++++++.    +....    ..++...  ++   . ++ +.++|.||
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~--~v~vid~~~~~~~~----~~~~~----~~~~~~gd~~~~~~l~~~~~~~a~~vi   70 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENN--DVTVIDTDEERLRR----LQDRL----DVRTVVGNGSSPDVLREAGAEDADLLI   70 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC--cEEEEECCHHHHHH----HHhhc----CEEEEEeCCCCHHHHHHcCCCcCCEEE
Confidence            689999999999999999998885  89999999987653    22211    1122211  11   1 23 78999999


Q ss_pred             EecC
Q 018760          111 VTAG  114 (350)
Q Consensus       111 i~~g  114 (350)
                      ++.+
T Consensus        71 ~~~~   74 (453)
T PRK09496         71 AVTD   74 (453)
T ss_pred             EecC
Confidence            9853

>PRK12829 short chain dehydrogenase; Provisional

Probab=95.95  E-value=0.082  Score=48.21  Aligned_cols=40  Identities=20%  Similarity=0.314  Sum_probs=34.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHH
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRG   77 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~   77 (350)
                      +.+++.|+|| |.+|+.++..|+++|.  +|++++++++.++.
T Consensus        10 ~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~~~~~~   50 (264)
T PRK12829         10 DGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSEAALAA   50 (264)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHH
Confidence            4579999999 9999999999999985  89999998765553

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.94  E-value=0.025  Score=57.93  Aligned_cols=115  Identities=17%  Similarity=0.198  Sum_probs=69.1

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      -..++|+|||.|.+|+.+|..+...|.  +|+.||.....-.  .   .. .    ....  . +. +.++.||+|+++.
T Consensus       138 l~gktvgIiG~G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~---~~-~----g~~~--~-~l~ell~~aDiV~l~l  202 (526)
T PRK13581        138 LYGKTLGIIGLGRIGSEVAKRAKAFGM--KVIAYDPYISPER--A---AQ-L----GVEL--V-SLDELLARADFITLHT  202 (526)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEECCCCChhH--H---Hh-c----CCEE--E-cHHHHHhhCCEEEEcc
Confidence            345799999999999999999988776  9999998643111  1   11 1    1122  2 45 5689999999996


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeec
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSG  179 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g  179 (350)
                      ....   +        +..++.  .+.+....|++++|+++-..=+-...+.+.  +...++-|.+
T Consensus       203 P~t~---~--------t~~li~--~~~l~~mk~ga~lIN~aRG~~vde~aL~~a--L~~g~i~gAa  253 (526)
T PRK13581        203 PLTP---E--------TRGLIG--AEELAKMKPGVRIINCARGGIIDEAALAEA--LKSGKVAGAA  253 (526)
T ss_pred             CCCh---H--------hhcCcC--HHHHhcCCCCeEEEECCCCceeCHHHHHHH--HhcCCeeEEE
Confidence            4321   1        111110  123344468899999985433333343333  2334665553

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.94  E-value=0.016  Score=63.34  Aligned_cols=75  Identities=12%  Similarity=0.193  Sum_probs=48.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCC------------eEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc--
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVE------------ELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA--  101 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~------------ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~--  101 (350)
                      ++.||+|||||.||...+..|+..+-..            .|++.|++.++++..+..+....    ...+- .+|.+  
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~----~v~lD-v~D~e~L  642 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAE----AVQLD-VSDSESL  642 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCc----eEEee-cCCHHHH
Confidence            4669999999999999999998764221            48899999876664333221100    11221 23432  


Q ss_pred             --ccCCCCEEEEecCC
Q 018760          102 --VTAGSDLCIVTAGA  115 (350)
Q Consensus       102 --al~~aDiVIi~~g~  115 (350)
                        .++++|+||++.+.
T Consensus       643 ~~~v~~~DaVIsalP~  658 (1042)
T PLN02819        643 LKYVSQVDVVISLLPA  658 (1042)
T ss_pred             HHhhcCCCEEEECCCc
Confidence              34789999999754

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.93  E-value=0.013  Score=46.89  Aligned_cols=89  Identities=18%  Similarity=0.362  Sum_probs=55.6

Q ss_pred             EEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c--cccCCCCEEEEe
Q 018760           40 ISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y--AVTAGSDLCIVT  112 (350)
Q Consensus        40 I~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~--~al~~aDiVIi~  112 (350)
                      |.|+|.|.+|..++..|...+  .+++++|.++++.+.    +....     ..+...  ++   +  ..+++||.||++
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~--~~vvvid~d~~~~~~----~~~~~-----~~~i~gd~~~~~~l~~a~i~~a~~vv~~   69 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGG--IDVVVIDRDPERVEE----LREEG-----VEVIYGDATDPEVLERAGIEKADAVVIL   69 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTT--SEEEEEESSHHHHHH----HHHTT-----SEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred             eEEEcCCHHHHHHHHHHHhCC--CEEEEEECCcHHHHH----HHhcc-----cccccccchhhhHHhhcCccccCEEEEc
Confidence            679999999999999999966  389999999986553    33221     123221  12   1  247899999988


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      .+..           ..|.    .++..+++..|+..++...
T Consensus        70 ~~~d-----------~~n~----~~~~~~r~~~~~~~ii~~~   96 (116)
T PF02254_consen   70 TDDD-----------EENL----LIALLARELNPDIRIIARV   96 (116)
T ss_dssp             SSSH-----------HHHH----HHHHHHHHHTTTSEEEEEE
T ss_pred             cCCH-----------HHHH----HHHHHHHHHCCCCeEEEEE
Confidence            5311           1232    3344556667766555444

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=95.93  E-value=0.18  Score=45.83  Aligned_cols=46  Identities=22%  Similarity=0.300  Sum_probs=37.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      +.++|.|+|+ |.+|..++..|++.|.  +|++.|+++++++.....+.
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~   55 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLK   55 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHH
Confidence            3468999998 9999999999999985  89999999877665444444

>PRK07069 short chain dehydrogenase; Validated

Probab=95.93  E-value=0.13  Score=46.46  Aligned_cols=113  Identities=19%  Similarity=0.235  Sum_probs=65.8

Q ss_pred             eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCC-ccchHHHHHHHHHHhhcCCCce-EEE-cCCcc-----------cc
Q 018760           39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAK-ADKLRGEMLDLQHAAAFLPRTK-ILA-SVDYA-----------VT  103 (350)
Q Consensus        39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~-~~~l~~~~~dl~~~~~~~~~~~-v~~-t~~~~-----------al  103 (350)
                      ||.|+|+ |.+|..++..|+..|.  +|++.+++ +++++....++..... ..... +.. -++.+           .+
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHG-EGVAFAAVQDVTDEAQWQALLAQAADAM   77 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCC-CceEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            5889998 9999999999999885  89999998 6655544444432210 00001 111 01211           13


Q ss_pred             CCCCEEEEecCCCcCc---cccH---HHHHHhhHH----HHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 AGSDLCIVTAGARQIA---GESR---LNLLQRNLS----LFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~---g~~r---~~~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ...|+||.++|.....   ..+.   ...+..|+.    ..+.+.+.+.+... +.++++|.
T Consensus        78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~ii~~ss  138 (251)
T PRK07069         78 GGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQP-ASIVNISS  138 (251)
T ss_pred             CCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC-cEEEEecC
Confidence            4679999998754311   1111   223445555    66777777766543 44555553

>PLN02780 ketoreductase/ oxidoreductase

Probab=95.93  E-value=0.078  Score=50.70  Aligned_cols=46  Identities=24%  Similarity=0.321  Sum_probs=39.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH   84 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~   84 (350)
                      ...+.|+|| |.+|..++..|+..|.  +|+++++++++++....++..
T Consensus        53 g~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~~l~~~~~~l~~   99 (320)
T PLN02780         53 GSWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPDKLKDVSDSIQS   99 (320)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHH
Confidence            457888899 8999999999999986  899999999988876666654

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.91  E-value=0.051  Score=53.86  Aligned_cols=116  Identities=14%  Similarity=0.199  Sum_probs=69.2

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      +-..++|+|||.|++|+.+|..+..-|.  +|..+|..+...          .    . .+....+. +.++.||+|++.
T Consensus       148 ~L~gktvGIiG~G~IG~~vA~~~~~fGm--~V~~~d~~~~~~----------~----~-~~~~~~~l~ell~~sDiVslh  210 (409)
T PRK11790        148 EVRGKTLGIVGYGHIGTQLSVLAESLGM--RVYFYDIEDKLP----------L----G-NARQVGSLEELLAQSDVVSLH  210 (409)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEECCCcccc----------c----C-CceecCCHHHHHhhCCEEEEc
Confidence            3456799999999999999998887775  999999753210          0    0 11222355 568999999998


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCC
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTN  181 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~  181 (350)
                      ....  + +++ .++  |.       +.+....|++++||++--.=+-...+.+.  +..+++-|.+..
T Consensus       211 ~Plt--~-~T~-~li--~~-------~~l~~mk~ga~lIN~aRG~~vde~aL~~a--L~~g~i~gaalD  264 (409)
T PRK11790        211 VPET--P-STK-NMI--GA-------EELALMKPGAILINASRGTVVDIDALADA--LKSGHLAGAAID  264 (409)
T ss_pred             CCCC--h-HHh-hcc--CH-------HHHhcCCCCeEEEECCCCcccCHHHHHHH--HHcCCceEEEEc
Confidence            5321  1 111 111  21       23344468899999984333333333333  233466666443

>PRK05867 short chain dehydrogenase; Provisional

Probab=95.91  E-value=0.12  Score=47.11  Aligned_cols=113  Identities=14%  Similarity=0.191  Sum_probs=66.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc-----------c
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA-----------V  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~-----------a  102 (350)
                      .+++.|+|+ |.+|..++..|+..|.  +|++.++++++++....++....   ........  ++.+           .
T Consensus         9 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (253)
T PRK05867          9 GKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG---GKVVPVCCDVSQHQQVTSMLDQVTAE   83 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC---CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            457889998 8999999999999985  89999999887765555554321   11111111  1211           1


Q ss_pred             cCCCCEEEEecCCCcC-c--cccHH---HHHHhh----HHHHHHHHhhhhccCCCeEEEEEc
Q 018760          103 TAGSDLCIVTAGARQI-A--GESRL---NLLQRN----LSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~-~--g~~r~---~~~~~n----~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +...|++|.++|.... +  ..+..   ..+..|    ..+.+.+.+.+.+....+.+++++
T Consensus        84 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s  145 (253)
T PRK05867         84 LGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTA  145 (253)
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence            2478999999875421 1  11111   122333    334455555555444345566554

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=95.91  E-value=0.027  Score=52.97  Aligned_cols=73  Identities=16%  Similarity=0.302  Sum_probs=50.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc-------------------cchHHHHHHHHHHhhcCCCceEEEc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA-------------------DKLRGEMLDLQHAAAFLPRTKILAS   97 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~v~~t   97 (350)
                      ..||.|+|+|.+|..+|..|+..|+ ++|+|+|-+.                   .|++.....|+..   .+..++...
T Consensus        19 ~s~VLIvG~gGLG~EiaKnLalaGV-g~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eL---Np~V~V~~~   94 (286)
T cd01491          19 KSNVLISGLGGLGVEIAKNLILAGV-KSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAEL---NPYVPVTVS   94 (286)
T ss_pred             cCcEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHH---CCCCEEEEE
Confidence            4689999999999999999999997 6999999753                   1222222223322   245555543


Q ss_pred             CC---ccccCCCCEEEEec
Q 018760           98 VD---YAVTAGSDLCIVTA  113 (350)
Q Consensus        98 ~~---~~al~~aDiVIi~~  113 (350)
                      +.   .+.+.+.|+||.+.
T Consensus        95 ~~~~~~~~l~~fdvVV~~~  113 (286)
T cd01491          95 TGPLTTDELLKFQVVVLTD  113 (286)
T ss_pred             eccCCHHHHhcCCEEEEec
Confidence            32   35689999998884

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.90  E-value=0.13  Score=46.75  Aligned_cols=44  Identities=18%  Similarity=0.299  Sum_probs=36.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      ++|.|+|+ |.+|..++..|+..|.  +|+++++++++++....++.
T Consensus         5 ~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~   49 (258)
T PRK12429          5 KVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQ   49 (258)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHH
Confidence            58999998 9999999999999885  89999999887765554554

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=95.89  E-value=0.061  Score=50.67  Aligned_cols=115  Identities=21%  Similarity=0.358  Sum_probs=71.8

Q ss_pred             eEE-EEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEE---c-CC--c----cccCCC
Q 018760           39 KIS-VIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA---S-VD--Y----AVTAGS  106 (350)
Q Consensus        39 KI~-IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~---t-~~--~----~al~~a  106 (350)
                      +.+ |.|| ..+|..+|..|+.+|+  +|+|+-++++||++.+.++.+....  ..++..   + .+  |    +.+.+-
T Consensus        50 ~WAVVTGaTDGIGKayA~eLAkrG~--nvvLIsRt~~KL~~v~kEI~~~~~v--ev~~i~~Dft~~~~~ye~i~~~l~~~  125 (312)
T KOG1014|consen   50 SWAVVTGATDGIGKAYARELAKRGF--NVVLISRTQEKLEAVAKEIEEKYKV--EVRIIAIDFTKGDEVYEKLLEKLAGL  125 (312)
T ss_pred             CEEEEECCCCcchHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHHhCc--EEEEEEEecCCCchhHHHHHHHhcCC
Confidence            544 5588 7999999999999998  8999999999999999999876531  222221   1 11  2    234555


Q ss_pred             C--EEEEecCCCcC-ccc----cH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcCCcc
Q 018760          107 D--LCIVTAGARQI-AGE----SR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVANPVD  158 (350)
Q Consensus       107 D--iVIi~~g~~~~-~g~----~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNP~~  158 (350)
                      |  ++|+.+|+... |..    +.   .+.+.-|    ...-+-+.+.|.+ ++.+.|++.+--.+
T Consensus       126 ~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~-r~~G~IvnigS~ag  190 (312)
T KOG1014|consen  126 DVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVE-RKKGIIVNIGSFAG  190 (312)
T ss_pred             ceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhc-CCCceEEEeccccc
Confidence            4  56667776442 210    11   1111111    2344556666666 67788888864433

>PRK07825 short chain dehydrogenase; Provisional

Probab=95.87  E-value=0.068  Score=49.29  Aligned_cols=114  Identities=17%  Similarity=0.177  Sum_probs=65.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC-------c-cccCCCC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD-------Y-AVTAGSD  107 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~-------~-~al~~aD  107 (350)
                      .++|.|+|| |.+|..++..|+..|.  +|++.++++++++....++.....+  ..++.-..+       . +...+.|
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~--~~D~~~~~~~~~~~~~~~~~~~~id   80 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGLVVGG--PLDVTDPASFAAFLDAVEADLGPID   80 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhccceEE--EccCCCHHHHHHHHHHHHHHcCCCC
Confidence            458999999 9999999999999885  8999999988776443333211100  011110000       0 1135679


Q ss_pred             EEEEecCCCcCc---ccc---HHHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760          108 LCIVTAGARQIA---GES---RLNLLQRNL----SLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       108 iVIi~~g~~~~~---g~~---r~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ++|.++|.....   ..+   -...+.-|.    ...+.+.+.+.+.. .+.++++|-
T Consensus        81 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~g~iv~isS  137 (273)
T PRK07825         81 VLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRG-RGHVVNVAS  137 (273)
T ss_pred             EEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEEcC
Confidence            999998864311   111   122233343    34555555555533 345666653

>PRK07024 short chain dehydrogenase; Provisional

Probab=95.86  E-value=0.059  Score=49.30  Aligned_cols=41  Identities=27%  Similarity=0.387  Sum_probs=34.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHH
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEML   80 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~   80 (350)
                      ++|.|+|+ |.+|..++..|++.|.  +|+++|+++++++....
T Consensus         3 ~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~   44 (257)
T PRK07024          3 LKVFITGASSGIGQALAREYARQGA--TLGLVARRTDALQAFAA   44 (257)
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH
Confidence            58999998 9999999999999985  89999999877654333

>PRK07677 short chain dehydrogenase; Provisional

Probab=95.86  E-value=0.21  Score=45.43  Aligned_cols=112  Identities=12%  Similarity=0.102  Sum_probs=65.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------c
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------T  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------l  103 (350)
                      +++.|+|+ |.+|..++..|++.|.  .|+++|+++++++....++....   ....+...  ++.+.           +
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~   76 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP---GQVLTVQMDVRNPEDVQKMVEQIDEKF   76 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence            47889998 8999999999999885  89999999877665544444221   11111111  12111           2


Q ss_pred             CCCCEEEEecCCCcC-c--cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEc
Q 018760          104 AGSDLCIVTAGARQI-A--GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~-~--g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ...|+||.++|.... +  ..+.   ...+..|    ..+.+.+.+.+.+....+.++++|
T Consensus        77 ~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~is  137 (252)
T PRK07677         77 GRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMV  137 (252)
T ss_pred             CCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEc
Confidence            467999998874321 1  1222   1223333    344555555554444456677776

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=95.86  E-value=0.085  Score=47.67  Aligned_cols=45  Identities=18%  Similarity=0.290  Sum_probs=36.8

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      .++|.|+|| |.+|+.++..|++.+.  +|+++|+++++......++.
T Consensus         3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~   48 (250)
T TIGR03206         3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIR   48 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHH
Confidence            468999998 9999999999999985  89999998876655444444

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=95.85  E-value=0.094  Score=55.43  Aligned_cols=54  Identities=17%  Similarity=0.262  Sum_probs=40.8

Q ss_pred             CCCCCCCCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           28 AAPPSPTKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        28 ~~~~~~~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      ++++....+.+++.|+|+ |.+|..++..|++.|.  +|+++|++.++++....++.
T Consensus       405 ~~~~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~~~~~~~~~~l~  459 (676)
T TIGR02632       405 RMPKEKTLARRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNLEAAEAVAAEIN  459 (676)
T ss_pred             cCCCCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHH
Confidence            444333334567899998 9999999999999985  89999999877765444444

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=95.83  E-value=0.05  Score=51.93  Aligned_cols=68  Identities=15%  Similarity=0.152  Sum_probs=48.0

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEE
Q 018760           33 PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIV  111 (350)
Q Consensus        33 ~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi  111 (350)
                      ...+..+|+|||.|++|.++|..|...|+  +|+.+|.... ..    +.....    ..++  . +. ++++.||+|++
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~--~ViV~~r~~~-s~----~~A~~~----G~~v--~-sl~Eaak~ADVV~l   77 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGV--EVVVGVRPGK-SF----EVAKAD----GFEV--M-SVSEAVRTAQVVQM   77 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHHHHCcC--EEEEEECcch-hh----HHHHHc----CCEE--C-CHHHHHhcCCEEEE
Confidence            34456799999999999999999999897  8999986422 11    122111    1222  2 44 67999999999


Q ss_pred             ecC
Q 018760          112 TAG  114 (350)
Q Consensus       112 ~~g  114 (350)
                      +..
T Consensus        78 lLP   80 (335)
T PRK13403         78 LLP   80 (335)
T ss_pred             eCC
Confidence            964

>PRK06196 oxidoreductase; Provisional

Probab=95.83  E-value=0.057  Score=51.20  Aligned_cols=114  Identities=11%  Similarity=0.161  Sum_probs=65.8

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc--------cccCCCC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY--------AVTAGSD  107 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~--------~al~~aD  107 (350)
                      .++|.|+|| |.+|..++..|+..|.  +|++.++++++++....++.....+  ..++.-..+.        +.....|
T Consensus        26 ~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~~~--~~Dl~d~~~v~~~~~~~~~~~~~iD  101 (315)
T PRK06196         26 GKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVEVV--MLDLADLESVRAFAERFLDSGRRID  101 (315)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCeEE--EccCCCHHHHHHHHHHHHhcCCCCC
Confidence            457999999 8999999999999985  8999999987765444344321100  1111100001        1124689


Q ss_pred             EEEEecCCCcCcc---ccH-HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          108 LCIVTAGARQIAG---ESR-LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       108 iVIi~~g~~~~~g---~~r-~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +||.++|....+.   .+. ...+..|    ..+.+.+.+.+.+.. .+.+|++|-
T Consensus       102 ~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS  156 (315)
T PRK06196        102 ILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVALSS  156 (315)
T ss_pred             EEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEECC
Confidence            9999988542211   111 1223333    344666666666543 355666653

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=95.82  E-value=0.035  Score=47.67  Aligned_cols=67  Identities=19%  Similarity=0.309  Sum_probs=43.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGA  115 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~  115 (350)
                      ..++++|+|.|.+|+.+|..|...|.  .|..+|+|+-++      ++-.+.   ..++.  +-.++++.+|++|.+.|.
T Consensus        22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga--~V~V~e~DPi~a------lqA~~d---Gf~v~--~~~~a~~~adi~vtaTG~   88 (162)
T PF00670_consen   22 AGKRVVVIGYGKVGKGIARALRGLGA--RVTVTEIDPIRA------LQAAMD---GFEVM--TLEEALRDADIFVTATGN   88 (162)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHHHTT---EEEEE-SSHHHH------HHHHHT---T-EEE---HHHHTTT-SEEEE-SSS
T ss_pred             CCCEEEEeCCCcccHHHHHHHhhCCC--EEEEEECChHHH------HHhhhc---CcEec--CHHHHHhhCCEEEECCCC
Confidence            34589999999999999999999995  999999999543      222211   23443  123689999999988664

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK06949 short chain dehydrogenase; Provisional

Probab=95.82  E-value=0.12  Score=47.03  Aligned_cols=46  Identities=15%  Similarity=0.294  Sum_probs=37.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      +.++|.|+|+ |.+|+.++..|+..+.  +|+++++++++++....++.
T Consensus         8 ~~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~   54 (258)
T PRK06949          8 EGKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRVERLKELRAEIE   54 (258)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence            3468999998 9999999999999885  89999999887765444443

>PRK08339 short chain dehydrogenase; Provisional

Probab=95.82  E-value=0.18  Score=46.52  Aligned_cols=113  Identities=9%  Similarity=0.176  Sum_probs=67.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc---c-------cC
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA---V-------TA  104 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~---a-------l~  104 (350)
                      +.+.|+|+ |.+|..++..|++.|.  +|+++|+++++++....++.....  ........  +|.+   +       +.
T Consensus         9 k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~g   84 (263)
T PRK08339          9 KLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSESN--VDVSYIVADLTKREDLERTVKELKNIG   84 (263)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcC--CceEEEEecCCCHHHHHHHHHHHHhhC
Confidence            46788898 8999999999999995  899999998877665555543211  11111111  1211   1       13


Q ss_pred             CCCEEEEecCCCcCc---cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          105 GSDLCIVTAGARQIA---GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       105 ~aDiVIi~~g~~~~~---g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ..|++|.++|.+...   ..+..+   .+.-|    ....+.+.+.|.+.. .+.||++|-
T Consensus        85 ~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~isS  144 (263)
T PRK08339         85 EPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYSTS  144 (263)
T ss_pred             CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcC
Confidence            579999998764321   112111   12223    445677777776543 355666654

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=95.81  E-value=0.036  Score=50.45  Aligned_cols=38  Identities=16%  Similarity=0.351  Sum_probs=33.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHH
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRG   77 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~   77 (350)
                      |+|.|+|| |.+|..++..|+..|.  +|+++++++++++.
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~   39 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQE   39 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHH
Confidence            68999998 9999999999999885  89999999876654

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.80  E-value=0.067  Score=54.01  Aligned_cols=74  Identities=22%  Similarity=0.304  Sum_probs=49.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc-chHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD-KLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGA  115 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~-~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~  115 (350)
                      ..+|.|||+|.+|..+|..|...|.  +|+++|.+++ ........+...     ..++....+.+...++|+||++.|.
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~-----gv~~~~~~~~~~~~~~D~Vv~s~Gi   88 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEAL-----GATVRLGPGPTLPEDTDLVVTSPGW   88 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHc-----CCEEEECCCccccCCCCEEEECCCc
Confidence            4589999999999999999998886  8999997653 222112223221     2344432222345679999999887


Q ss_pred             Cc
Q 018760          116 RQ  117 (350)
Q Consensus       116 ~~  117 (350)
                      +.
T Consensus        89 ~~   90 (480)
T PRK01438         89 RP   90 (480)
T ss_pred             CC
Confidence            53

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.80  E-value=0.056  Score=48.96  Aligned_cols=72  Identities=19%  Similarity=0.357  Sum_probs=47.2

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc--cccCCCCEEE
Q 018760           33 PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY--AVTAGSDLCI  110 (350)
Q Consensus        33 ~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~--~al~~aDiVI  110 (350)
                      ...+.++|.|||+|.|+..=+..|+..+.  +|+++-..-.  + ...++...    ...++.. .++  ++++++++||
T Consensus        21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA--~VtVVap~i~--~-el~~l~~~----~~i~~~~-r~~~~~dl~g~~LVi   90 (223)
T PRK05562         21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGC--YVYILSKKFS--K-EFLDLKKY----GNLKLIK-GNYDKEFIKDKHLIV   90 (223)
T ss_pred             EECCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEcCCCC--H-HHHHHHhC----CCEEEEe-CCCChHHhCCCcEEE
Confidence            34456799999999999998999999884  8888865421  1 11122221    1233332 244  5699999999


Q ss_pred             EecC
Q 018760          111 VTAG  114 (350)
Q Consensus       111 i~~g  114 (350)
                      .+..
T Consensus        91 aATd   94 (223)
T PRK05562         91 IATD   94 (223)
T ss_pred             ECCC
Confidence            9853

>PRK06172 short chain dehydrogenase; Provisional

Probab=95.79  E-value=0.13  Score=46.82  Aligned_cols=46  Identities=15%  Similarity=0.146  Sum_probs=37.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      +.++|.|+|| |.+|..++..|++.|.  +|+++++++++++....++.
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~   52 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGA--KVVVADRDAAGGEETVALIR   52 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHH
Confidence            3468999999 8999999999999885  89999999877765554554

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=95.79  E-value=0.041  Score=52.48  Aligned_cols=32  Identities=25%  Similarity=0.650  Sum_probs=29.5

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      ||.|||+|.+|+.++..|+..|+ ++|+|+|.|
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gv-g~ItIvD~D   32 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGF-GEIHIIDLD   32 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcC-CeEEEEcCC
Confidence            68999999999999999999997 799999965

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.79  E-value=0.23  Score=44.66  Aligned_cols=45  Identities=18%  Similarity=0.346  Sum_probs=35.3

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEE-eCCccchHHHHHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALV-DAKADKLRGEMLDLQ   83 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~-D~~~~~l~~~~~dl~   83 (350)
                      +++|.|+|+ |.+|..++..|++.+.  ++++. ++++++++.....+.
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~   51 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINEEAAQELLEEIK   51 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHH
Confidence            358999998 9999999999998885  78887 998876654444443

>PRK12828 short chain dehydrogenase; Provisional

Probab=95.78  E-value=0.037  Score=49.51  Aligned_cols=44  Identities=20%  Similarity=0.317  Sum_probs=35.8

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL   82 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl   82 (350)
                      .++|.|+|+ |.+|..++..|++.|.  +|+++++++++......++
T Consensus         7 ~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~   51 (239)
T PRK12828          7 GKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGAAPLSQTLPGV   51 (239)
T ss_pred             CCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCChHhHHHHHHHH
Confidence            468999998 9999999999999985  8999999887655433333

>PRK12367 short chain dehydrogenase; Provisional

Probab=95.78  E-value=0.057  Score=49.52  Aligned_cols=99  Identities=13%  Similarity=0.117  Sum_probs=57.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc-chHHHHHHHHHHhhcCCCceEEEcCCc----cccCCCCEE
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD-KLRGEMLDLQHAAAFLPRTKILASVDY----AVTAGSDLC  109 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~-~l~~~~~dl~~~~~~~~~~~v~~t~~~----~al~~aDiV  109 (350)
                      +.+++.|+|| |.+|..++..|+..|.  +|++++++++ .++.    ..+.. . ....... ++.    +.+...|++
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~----~~~~~-~-~~~~~D~-~~~~~~~~~~~~iDil   83 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSES----NDESP-N-EWIKWEC-GKEESLDKQLASLDVL   83 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhh----hccCC-C-eEEEeeC-CCHHHHHHhcCCCCEE
Confidence            3457899999 8999999999999985  8999998762 2210    01100 0 0011111 122    246679999


Q ss_pred             EEecCCCcCccccH---HHHHHhh----HHHHHHHHhhhhc
Q 018760          110 IVTAGARQIAGESR---LNLLQRN----LSLFKAIIPPLVK  143 (350)
Q Consensus       110 Ii~~g~~~~~g~~r---~~~~~~n----~~i~~~i~~~i~~  143 (350)
                      |.++|.......+.   .+.+.-|    ..+.+.+.+.+.+
T Consensus        84 VnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~  124 (245)
T PRK12367         84 ILNHGINPGGRQDPENINKALEINALSSWRLLELFEDIALN  124 (245)
T ss_pred             EECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            99998632211222   2233444    3455556666644

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=95.77  E-value=0.14  Score=45.93  Aligned_cols=46  Identities=17%  Similarity=0.289  Sum_probs=37.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      +.++|.|+|| |.+|..++..|++.|.  +|+++++++++++....++.
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~   50 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNEEAAEALAAELR   50 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHHHH
Confidence            3468999999 9999999999999886  79999999877664444444

>PRK05650 short chain dehydrogenase; Provisional

Probab=95.76  E-value=0.18  Score=46.49  Aligned_cols=111  Identities=21%  Similarity=0.215  Sum_probs=65.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------c
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------T  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------l  103 (350)
                      ++|.|+|+ |.+|..++..|++.|.  +|++.+++.++++....++....   ....+...  ++.+.           .
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~i~~~~   75 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKLLREAG---GDGFYQRCDVRDYSQLTALAQACEEKW   75 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            47899999 9999999999999985  89999998877765555554321   11111111  11111           2


Q ss_pred             CCCCEEEEecCCCcC---ccccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEc
Q 018760          104 AGSDLCIVTAGARQI---AGESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~---~g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ...|+||.++|....   ...+.   ...+.-|    ..+.+.+.+.+.+... +.++++|
T Consensus        76 ~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~vs  135 (270)
T PRK05650         76 GGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKS-GRIVNIA  135 (270)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCC-CEEEEEC
Confidence            368999999875421   11111   1123344    3344555555555433 4455555

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=95.76  E-value=0.039  Score=52.14  Aligned_cols=32  Identities=25%  Similarity=0.533  Sum_probs=29.1

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      ||.|+|+|.+|+.++..|+..|+ .+|+|+|-+
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGV-g~ItlvD~D   32 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGV-RHITFVDSG   32 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCC-CeEEEECCC
Confidence            79999999999999999999997 689999954

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.75  E-value=0.035  Score=52.32  Aligned_cols=75  Identities=24%  Similarity=0.277  Sum_probs=54.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC--c-cccCCCCEEE
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD--Y-AVTAGSDLCI  110 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~--~-~al~~aDiVI  110 (350)
                      ..++-||+|||+|-+|..-|...+.-+  .+|.++|+|.+|+..    +.+..  ..+.....++.  . ++++.+|+||
T Consensus       165 GV~~~kv~iiGGGvvgtnaAkiA~glg--A~Vtild~n~~rl~~----ldd~f--~~rv~~~~st~~~iee~v~~aDlvI  236 (371)
T COG0686         165 GVLPAKVVVLGGGVVGTNAAKIAIGLG--ADVTILDLNIDRLRQ----LDDLF--GGRVHTLYSTPSNIEEAVKKADLVI  236 (371)
T ss_pred             CCCCccEEEECCccccchHHHHHhccC--CeeEEEecCHHHHhh----hhHhh--CceeEEEEcCHHHHHHHhhhccEEE
Confidence            567789999999999999887766666  499999999998862    33332  22334443433  3 5799999999


Q ss_pred             EecCCC
Q 018760          111 VTAGAR  116 (350)
Q Consensus       111 i~~g~~  116 (350)
                      -++-.|
T Consensus       237 gaVLIp  242 (371)
T COG0686         237 GAVLIP  242 (371)
T ss_pred             EEEEec
Confidence            986443

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=95.74  E-value=0.23  Score=46.32  Aligned_cols=72  Identities=17%  Similarity=0.225  Sum_probs=43.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeC-CccchHHHHHHHHHHhhcCCCceEEEcCCcccc-CCCCEEEEec
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDA-KADKLRGEMLDLQHAAAFLPRTKILASVDYAVT-AGSDLCIVTA  113 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~-~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al-~~aDiVIi~~  113 (350)
                      +||+|+|+ |.||..++..+....-..=+.++|+ ++++..   .++....... ...+..++|++++ .++|+||.+.
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~---~~~~~~~~~~-~~gv~~~~d~~~l~~~~DvVIdfT   76 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQG---TDAGELAGIG-KVGVPVTDDLEAVETDPDVLIDFT   76 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccC---CCHHHhcCcC-cCCceeeCCHHHhcCCCCEEEECC
Confidence            79999995 9999999998887643334556884 333321   1222221111 1124445577554 4689999985

>PRK06139 short chain dehydrogenase; Provisional

Probab=95.73  E-value=0.15  Score=49.08  Aligned_cols=75  Identities=13%  Similarity=0.232  Sum_probs=51.6

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------  102 (350)
                      .++|.|+|| |.+|..++..|+..|.  +|+++++++++++....++....   ....+...  +|.++           
T Consensus         7 ~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g---~~~~~~~~Dv~d~~~v~~~~~~~~~~   81 (330)
T PRK06139          7 GAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALG---AEVLVVPTDVTDADQVKALATQAASF   81 (330)
T ss_pred             CCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence            357899999 8999999999999995  89999999988876555554321   11111111  12111           


Q ss_pred             cCCCCEEEEecCCC
Q 018760          103 TAGSDLCIVTAGAR  116 (350)
Q Consensus       103 l~~aDiVIi~~g~~  116 (350)
                      +...|++|.++|..
T Consensus        82 ~g~iD~lVnnAG~~   95 (330)
T PRK06139         82 GGRIDVWVNNVGVG   95 (330)
T ss_pred             cCCCCEEEECCCcC
Confidence            24679999998864

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.72  E-value=0.025  Score=49.01  Aligned_cols=55  Identities=24%  Similarity=0.441  Sum_probs=43.2

Q ss_pred             CCCCeEEEEcCChh-HHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           35 KRHTKISVIGTGNV-GMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        35 ~~~~KI~IIGAG~v-G~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      -+..||.|||+|.+ |..++..|...+.  +|++++++.+                         +. +.+++||+||.+
T Consensus        42 l~gk~vlViG~G~~~G~~~a~~L~~~g~--~V~v~~r~~~-------------------------~l~~~l~~aDiVIsa   94 (168)
T cd01080          42 LAGKKVVVVGRSNIVGKPLAALLLNRNA--TVTVCHSKTK-------------------------NLKEHTKQADIVIVA   94 (168)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhCCC--EEEEEECCch-------------------------hHHHHHhhCCEEEEc
Confidence            44579999999985 8889999998886  7999997531                         22 457889999999


Q ss_pred             cCCC
Q 018760          113 AGAR  116 (350)
Q Consensus       113 ~g~~  116 (350)
                      .+.|
T Consensus        95 t~~~   98 (168)
T cd01080          95 VGKP   98 (168)
T ss_pred             CCCC
Confidence            7765

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=95.72  E-value=0.05  Score=52.23  Aligned_cols=95  Identities=21%  Similarity=0.282  Sum_probs=59.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~~aDiVIi~~g  114 (350)
                      ..++|.|||+|.+|+.++..+..-|.  +|..||....+-..    -.+        .+....+.+ -++.||||++...
T Consensus       141 ~gkTvGIiG~G~IG~~va~~l~afgm--~v~~~d~~~~~~~~----~~~--------~~~~~~~Ld~lL~~sDiv~lh~P  206 (324)
T COG0111         141 AGKTVGIIGLGRIGRAVAKRLKAFGM--KVIGYDPYSPRERA----GVD--------GVVGVDSLDELLAEADILTLHLP  206 (324)
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCC--eEEEECCCCchhhh----ccc--------cceecccHHHHHhhCCEEEEcCC
Confidence            35799999999999999999999897  99999994322110    000        122123454 5899999999854


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV  157 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~  157 (350)
                      ...   ++|. ++  |       ++.+.+..|.+++||++--.
T Consensus       207 lT~---eT~g-~i--~-------~~~~a~MK~gailIN~aRG~  236 (324)
T COG0111         207 LTP---ETRG-LI--N-------AEELAKMKPGAILINAARGG  236 (324)
T ss_pred             CCc---chhc-cc--C-------HHHHhhCCCCeEEEECCCcc
Confidence            221   1110 11  1       12233335788999998543

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=95.70  E-value=0.21  Score=44.93  Aligned_cols=46  Identities=22%  Similarity=0.225  Sum_probs=36.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      +.++|.|+|| |.+|..++..|++.|.  +|++++++++++......+.
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~   51 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVE   51 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence            3468999998 9999999999999985  89999999776654444443

>PRK06138 short chain dehydrogenase; Provisional

Probab=95.70  E-value=0.091  Score=47.56  Aligned_cols=45  Identities=16%  Similarity=0.196  Sum_probs=35.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHH
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL   82 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl   82 (350)
                      +.+++.|+|+ |.+|+.++..|++.|.  +|++++++.+.++....++
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~   49 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDAEAAERVAAAI   49 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCHHHHHHHHHHH
Confidence            4468999999 9999999999999885  8999999877665433333

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=95.70  E-value=0.047  Score=50.21  Aligned_cols=37  Identities=14%  Similarity=0.299  Sum_probs=30.6

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCC-----C----CeEEEEeCC
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDF-----V----EELALVDAK   71 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~-----~----~ev~L~D~~   71 (350)
                      .++.||.|||+|.+|+.++..|+..|+     .    .+|+|+|-|
T Consensus         9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D   54 (244)
T TIGR03736         9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDD   54 (244)
T ss_pred             hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCC
Confidence            456799999999999999999998752     1    189999975

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=95.70  E-value=0.041  Score=55.96  Aligned_cols=130  Identities=15%  Similarity=0.258  Sum_probs=83.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHh----cCCC-----CeEEEEeCCc----cc---hHHHHHHHHHHhhcCCCceEEEcCCc
Q 018760           37 HTKISVIGTGNVGMAIAQTILT----QDFV-----EELALVDAKA----DK---LRGEMLDLQHAAAFLPRTKILASVDY  100 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~----~~~~-----~ev~L~D~~~----~~---l~~~~~dl~~~~~~~~~~~v~~t~~~  100 (350)
                      ..||++.|||+.|..+|..|+.    .|+-     ..++++|..-    ++   +......+.+..   ....-....+.
T Consensus       297 d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~---~~~~~~~~~~L  373 (559)
T PTZ00317        297 EQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTD---ISAEDSSLKTL  373 (559)
T ss_pred             hcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccc---cccccccCCCH
Confidence            4689999999999999987764    5652     5899999753    22   221222222211   00110002355


Q ss_pred             -cccCCC--CEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc---chHHHHHHHHhCCCCCc
Q 018760          101 -AVTAGS--DLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV---DILTYVAWKLSGLPSNR  174 (350)
Q Consensus       101 -~al~~a--DiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~---~~~~~~~~~~sg~~~~r  174 (350)
                       ++++++  |++|=+.+.+   |-           +-+++.+.|.++|+..+|.-.|||.   ++..+-+++++.  -+-
T Consensus       374 ~e~v~~~KPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~--Gra  437 (559)
T PTZ00317        374 EDVVRFVKPTALLGLSGVG---GV-----------FTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTN--GRA  437 (559)
T ss_pred             HHHHhccCCCEEEEecCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhcc--CCE
Confidence             778998  9988765433   21           1246677888899999999999997   566777777752  135


Q ss_pred             EeeecCCccHH
Q 018760          175 VIGSGTNLDSS  185 (350)
Q Consensus       175 viG~g~~ld~~  185 (350)
                      +|++|+-.+..
T Consensus       438 i~AtGspf~pv  448 (559)
T PTZ00317        438 IVASGSPFPPV  448 (559)
T ss_pred             EEEECCCCCCc
Confidence            88998876654

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=95.68  E-value=0.092  Score=48.90  Aligned_cols=85  Identities=18%  Similarity=0.263  Sum_probs=49.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeE-EEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcccc-CCCCEEEEecC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEEL-ALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVT-AGSDLCIVTAG  114 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev-~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al-~~aDiVIi~~g  114 (350)
                      ++||+|||+|.||..++..+...+-. ++ .+++.+. ..+.....+.      .  .+..++|++++ .+.|+||++++
T Consensus         1 m~rVgIiG~G~iG~~~~~~l~~~~~~-~l~~v~~~~~-~~~~~~~~~~------~--~~~~~~d~~~l~~~~DvVve~t~   70 (265)
T PRK13303          1 MMKVAMIGFGAIGAAVLELLEHDPDL-RVDWVIVPEH-SIDAVRRALG------E--AVRVVSSVDALPQRPDLVVECAG   70 (265)
T ss_pred             CcEEEEECCCHHHHHHHHHHhhCCCc-eEEEEEEcCC-CHHHHhhhhc------c--CCeeeCCHHHhccCCCEEEECCC
Confidence            47999999999999999888876432 33 3334332 1221111111      1  13334566554 56899999974


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhccCCC
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPD  147 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~  147 (350)
                      .                ....+++..+-+...+
T Consensus        71 ~----------------~~~~e~~~~aL~aGk~   87 (265)
T PRK13303         71 H----------------AALKEHVVPILKAGID   87 (265)
T ss_pred             H----------------HHHHHHHHHHHHcCCC
Confidence            2                2335566666665555

>PRK09242 tropinone reductase; Provisional

Probab=95.68  E-value=0.35  Score=44.05  Aligned_cols=48  Identities=23%  Similarity=0.326  Sum_probs=39.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHH
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHA   85 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~   85 (350)
                      +.+++.|+|+ |.+|..++..|++.|.  +|++++++++.++....++...
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~   56 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEE   56 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhh
Confidence            4468999998 8999999999999985  8999999988776655555543

>PRK06181 short chain dehydrogenase; Provisional

Probab=95.67  E-value=0.16  Score=46.37  Aligned_cols=74  Identities=18%  Similarity=0.289  Sum_probs=49.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------c
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------T  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------l  103 (350)
                      ++|.|+|+ |.+|..++..|+..+.  +|++++++++.++....++....   ....+...  ++.+.           +
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~   76 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG---GEALVVPTDVSDAEACERLIEAAVARF   76 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            47999999 9999999999998885  89999998876654444443321   12222211  12111           2


Q ss_pred             CCCCEEEEecCCC
Q 018760          104 AGSDLCIVTAGAR  116 (350)
Q Consensus       104 ~~aDiVIi~~g~~  116 (350)
                      ...|+||.++|..
T Consensus        77 ~~id~vi~~ag~~   89 (263)
T PRK06181         77 GGIDILVNNAGIT   89 (263)
T ss_pred             CCCCEEEECCCcc
Confidence            3679999998753

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=95.66  E-value=0.035  Score=50.67  Aligned_cols=43  Identities=21%  Similarity=0.342  Sum_probs=35.6

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLD   81 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~d   81 (350)
                      ..++.|+|+ |.+|..++..|++.|.  +|+++|++.++++....+
T Consensus         6 ~~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~   49 (257)
T PRK07067          6 GKVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALE   49 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHH
Confidence            357999998 9999999999999985  899999998776644333

>PRK07478 short chain dehydrogenase; Provisional

Probab=95.66  E-value=0.23  Score=45.21  Aligned_cols=113  Identities=19%  Similarity=0.184  Sum_probs=66.7

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc-----------c
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA-----------V  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~-----------a  102 (350)
                      .+++.|+|+ |.+|..++..|++.|.  +|++.++++++++....++....   ....+...  ++.+           .
T Consensus         6 ~k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (254)
T PRK07478          6 GKVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEG---GEAVALAGDVRDEAYAKALVALAVER   80 (254)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            457899998 8999999999999985  89999999887776555554321   11111111  1111           1


Q ss_pred             cCCCCEEEEecCCCc--Cc--cccH---HHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 TAGSDLCIVTAGARQ--IA--GESR---LNLLQRNL----SLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 l~~aDiVIi~~g~~~--~~--g~~r---~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ....|++|.++|...  .+  ..+.   ...+.-|.    ...+.+.+.+.+.. .+.+|+++.
T Consensus        81 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~-~~~iv~~sS  143 (254)
T PRK07478         81 FGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARG-GGSLIFTST  143 (254)
T ss_pred             cCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEec
Confidence            236799999988531  12  1121   22344444    34455566665543 344555543

>PRK07890 short chain dehydrogenase; Provisional

Probab=95.65  E-value=0.19  Score=45.64  Aligned_cols=45  Identities=16%  Similarity=0.250  Sum_probs=37.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      .++|.|+|+ |.+|..++..|+..|.  +|+++|++++.++....++.
T Consensus         5 ~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~   50 (258)
T PRK07890          5 GKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEID   50 (258)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHH
Confidence            458999998 8999999999999996  89999998876665444444

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=95.64  E-value=0.03  Score=45.00  Aligned_cols=67  Identities=18%  Similarity=0.331  Sum_probs=45.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHhc-CCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccC--CCCEEEEec
Q 018760           38 TKISVIGTGNVGMAIAQTILTQ-DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTA--GSDLCIVTA  113 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~-~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~--~aDiVIi~~  113 (350)
                      +||+|||+|.+|......+... +-..-+.++|.++++.+.    +....    ...  ..+|.+ .++  +.|+|+++.
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~----~~~~~----~~~--~~~~~~~ll~~~~~D~V~I~t   70 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEA----FAEKY----GIP--VYTDLEELLADEDVDAVIIAT   70 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHH----HHHHT----TSE--EESSHHHHHHHTTESEEEEES
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHH----HHHHh----ccc--chhHHHHHHHhhcCCEEEEec
Confidence            5899999999999998877777 333234589999877653    22222    223  345664 344  799999996


Q ss_pred             C
Q 018760          114 G  114 (350)
Q Consensus       114 g  114 (350)
                      .
T Consensus        71 p   71 (120)
T PF01408_consen   71 P   71 (120)
T ss_dssp             S
T ss_pred             C
Confidence            4

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=95.64  E-value=0.05  Score=51.37  Aligned_cols=32  Identities=28%  Similarity=0.606  Sum_probs=29.4

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      ||.|||+|.+|+.++..|+..|+ ++|+|+|-|
T Consensus         1 kVlVVGaGGlG~eilknLal~Gv-g~I~IvD~D   32 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGF-RNIHVIDMD   32 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCC-CeEEEECCC
Confidence            68999999999999999999997 699999965

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK05875 short chain dehydrogenase; Provisional

Probab=95.61  E-value=0.15  Score=46.94  Aligned_cols=45  Identities=18%  Similarity=0.341  Sum_probs=36.8

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      .++|.|+|+ |.+|..++..|+..|.  +|+++++++++++....++.
T Consensus         7 ~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~   52 (276)
T PRK05875          7 DRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNPDKLAAAAEEIE   52 (276)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHH
Confidence            468999998 9999999999999986  89999998876665444443

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=95.61  E-value=0.24  Score=45.01  Aligned_cols=47  Identities=17%  Similarity=0.306  Sum_probs=38.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHH
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH   84 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~   84 (350)
                      +.+++.|+|| |.+|..++..|+..|.  +|++.|+++++++....++.+
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~~~~~~~~~~l~~   55 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGA--EIIINDITAERAELAVAKLRQ   55 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHh
Confidence            3457999998 8999999999999885  999999998777655555543

>PRK05876 short chain dehydrogenase; Provisional

Probab=95.60  E-value=0.27  Score=45.64  Aligned_cols=113  Identities=13%  Similarity=0.156  Sum_probs=66.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------c
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------T  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------l  103 (350)
                      +.+.|+|+ |.+|..++..|+..|.  +|++.|+++++++....++....   ........  +|.++           +
T Consensus         7 k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~   81 (275)
T PRK05876          7 RGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAEG---FDVHGVMCDVRHREEVTHLADEAFRLL   81 (275)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            46888898 8999999999999985  89999999877765554554211   11111111  12111           2


Q ss_pred             CCCCEEEEecCCCcCc---cccHH---HHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 AGSDLCIVTAGARQIA---GESRL---NLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~---g~~r~---~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ...|+||..+|.....   ..+..   ..+..|    ....+.+.+.+.+....+.+|+++.
T Consensus        82 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS  143 (275)
T PRK05876         82 GHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS  143 (275)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            3479999998863211   11221   223334    3455555565655543455666653

>PRK07904 short chain dehydrogenase; Provisional

Probab=95.59  E-value=0.18  Score=46.28  Aligned_cols=115  Identities=17%  Similarity=0.223  Sum_probs=66.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccc-hHHHHHHHHHHhhcCCCceEEEc--CCc-------ccc-
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADK-LRGEMLDLQHAAAFLPRTKILAS--VDY-------AVT-  103 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~-l~~~~~dl~~~~~~~~~~~v~~t--~~~-------~al-  103 (350)
                      +.++|.|+|| |.+|..++..|++.+- .+|+++++++++ ++....++.....  ....+...  +|.       +.+ 
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg-~~V~~~~r~~~~~~~~~~~~l~~~~~--~~v~~~~~D~~~~~~~~~~~~~~~   83 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAP-ARVVLAALPDDPRRDAAVAQMKAAGA--SSVEVIDFDALDTDSHPKVIDAAF   83 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCC-CeEEEEeCCcchhHHHHHHHHHhcCC--CceEEEEecCCChHHHHHHHHHHH
Confidence            3457999999 9999999999998752 289999999875 6655555543210  01111111  111       111 


Q ss_pred             --CCCCEEEEecCCCcCccc---cH---HHHHHhhH----HHHHHHHhhhhccCCCeEEEEEc
Q 018760          104 --AGSDLCIVTAGARQIAGE---SR---LNLLQRNL----SLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       104 --~~aDiVIi~~g~~~~~g~---~r---~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                        .+.|++|.++|.......   +.   .+.+..|.    .+.+.+.+.+.+... +.++++|
T Consensus        84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~-~~iv~is  145 (253)
T PRK07904         84 AGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGF-GQIIAMS  145 (253)
T ss_pred             hcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCC-ceEEEEe
Confidence              368999998876432111   11   12344443    333556677766544 4455554

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=95.59  E-value=0.026  Score=57.56  Aligned_cols=125  Identities=20%  Similarity=0.363  Sum_probs=82.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHh-----cCCC-----CeEEEEeCCc----cc---hHHHHHHHHHHhhcCCCceEEEcCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILT-----QDFV-----EELALVDAKA----DK---LRGEMLDLQHAAAFLPRTKILASVD   99 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~-----~~~~-----~ev~L~D~~~----~~---l~~~~~dl~~~~~~~~~~~v~~t~~   99 (350)
                      ..||++.|||+.|..++..|..     .|+-     ..++++|.+-    ++   +......+.+.      ..  ...+
T Consensus       321 d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~------~~--~~~~  392 (581)
T PLN03129        321 DQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHD------HE--PGAS  392 (581)
T ss_pred             hceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhh------cc--cCCC
Confidence            4699999999999999987776     3552     5899999853    22   22222222221      11  1235


Q ss_pred             c-cccCC--CCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc---chHHHHHHHHhCCCCC
Q 018760          100 Y-AVTAG--SDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV---DILTYVAWKLSGLPSN  173 (350)
Q Consensus       100 ~-~al~~--aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~---~~~~~~~~~~sg~~~~  173 (350)
                      + +++++  +|++|=+.+.+   |-           +-+++.+.|.+++++.+|.-.|||.   ++..+-+++++.  -+
T Consensus       393 L~e~v~~vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~--G~  456 (581)
T PLN03129        393 LLEAVKAIKPTVLIGLSGVG---GT-----------FTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTWTG--GR  456 (581)
T ss_pred             HHHHHhccCCCEEEEecCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhc--CC
Confidence            5 67888  89988775433   21           1245677788889999999999997   666677777762  13


Q ss_pred             cEeeecCCccHH
Q 018760          174 RVIGSGTNLDSS  185 (350)
Q Consensus       174 rviG~g~~ld~~  185 (350)
                      -+|++|+-.+..
T Consensus       457 ai~AtGSPf~pv  468 (581)
T PLN03129        457 AIFASGSPFDPV  468 (581)
T ss_pred             EEEEeCCCCCCe
Confidence            588888766543

>PRK05855 short chain dehydrogenase; Validated

Probab=95.58  E-value=0.13  Score=52.46  Aligned_cols=115  Identities=15%  Similarity=0.130  Sum_probs=70.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----------  102 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----------  102 (350)
                      +.+++.|+|| |.+|..++..|+..|.  +|+++++++++++....++....   ....+...  +|.++          
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~~~~~~~~~~~  388 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAG---AVAHAYRVDVSDADAMEAFAEWVRA  388 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            4568999999 9999999999999986  89999999887765555554321   11122211  12111          


Q ss_pred             -cCCCCEEEEecCCCcCc---cccHH---HHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 -TAGSDLCIVTAGARQIA---GESRL---NLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 -l~~aDiVIi~~g~~~~~---g~~r~---~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                       ....|++|.++|.....   ..+..   ..+.-|    ....+.+.+.+.+....+.||++|-
T Consensus       389 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS  452 (582)
T PRK05855        389 EHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVAS  452 (582)
T ss_pred             hcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence             23479999999864321   11211   223334    3455556666666555566777654

>PLN02306 hydroxypyruvate reductase

Probab=95.58  E-value=0.08  Score=52.05  Aligned_cols=127  Identities=16%  Similarity=0.135  Sum_probs=67.8

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHH-hcCCCCeEEEEeCCccc-hHHHHHHHHH-Hhh-cCCCceEEEcCCc-cccCCCCEE
Q 018760           35 KRHTKISVIGTGNVGMAIAQTIL-TQDFVEELALVDAKADK-LRGEMLDLQH-AAA-FLPRTKILASVDY-AVTAGSDLC  109 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~-~~~~~~ev~L~D~~~~~-l~~~~~dl~~-~~~-~~~~~~v~~t~~~-~al~~aDiV  109 (350)
                      ....+|+|||.|.+|+.+|..+. .-|.  +|..+|..... .......... ... ......+....+. +.++.||+|
T Consensus       163 L~gktvGIiG~G~IG~~vA~~l~~~fGm--~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV  240 (386)
T PLN02306        163 LKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI  240 (386)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCC--EEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEE
Confidence            34579999999999999998875 4454  89999987531 1110001100 000 0001122222355 568999999


Q ss_pred             EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                      ++.....  + +++ .++  |.       +.+....|++++||++--.=+-...+.+.  +...++.|.
T Consensus       241 ~lh~Plt--~-~T~-~li--n~-------~~l~~MK~ga~lIN~aRG~lVDe~AL~~A--L~sg~i~gA  294 (386)
T PLN02306        241 SLHPVLD--K-TTY-HLI--NK-------ERLALMKKEAVLVNASRGPVIDEVALVEH--LKANPMFRV  294 (386)
T ss_pred             EEeCCCC--h-hhh-hhc--CH-------HHHHhCCCCeEEEECCCccccCHHHHHHH--HHhCCeeEE
Confidence            9985321  1 111 111  21       23334468999999984332323333333  223466555

>PRK08251 short chain dehydrogenase; Provisional

Probab=95.56  E-value=0.24  Score=44.79  Aligned_cols=76  Identities=25%  Similarity=0.303  Sum_probs=50.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc-----------cc
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA-----------VT  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~-----------al  103 (350)
                      +++.|+|+ |.+|..++..|++.+.  +|++.++++++++....++..... .....+...  ++.+           .+
T Consensus         3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   79 (248)
T PRK08251          3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRTDRLEELKAELLARYP-GIKVAVAALDVNDHDQVFEVFAEFRDEL   79 (248)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCC-CceEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            47899998 9999999999999884  899999998877655555543211 001111111  1111           13


Q ss_pred             CCCCEEEEecCCC
Q 018760          104 AGSDLCIVTAGAR  116 (350)
Q Consensus       104 ~~aDiVIi~~g~~  116 (350)
                      ...|+||.++|..
T Consensus        80 ~~id~vi~~ag~~   92 (248)
T PRK08251         80 GGLDRVIVNAGIG   92 (248)
T ss_pred             CCCCEEEECCCcC
Confidence            4689999998764

>PRK12827 short chain dehydrogenase; Provisional

Probab=95.56  E-value=0.33  Score=43.63  Aligned_cols=34  Identities=21%  Similarity=0.443  Sum_probs=29.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      .++|.|+|| |.+|..++..|++.+.  +|++++...
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~~   40 (249)
T PRK12827          6 SRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIHP   40 (249)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCcc
Confidence            468999998 9999999999999885  899988643

>PRK07060 short chain dehydrogenase; Provisional

Probab=95.56  E-value=0.041  Score=49.59  Aligned_cols=39  Identities=18%  Similarity=0.246  Sum_probs=33.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      +.+++.|+|+ |.+|..++..|+..+.  +|+++++++++++
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~~~   47 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAALD   47 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHH
Confidence            3468999999 8999999999999985  8999999887654

>TIGR02415 23BDH acetoin reductases

Probab=95.55  E-value=0.064  Score=48.67  Aligned_cols=111  Identities=17%  Similarity=0.209  Sum_probs=64.5

Q ss_pred             eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------cC
Q 018760           39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------TA  104 (350)
Q Consensus        39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------l~  104 (350)
                      ++.|+|+ |.+|..++..|++.|.  +|+++++++++++....++....   ....+...  +|.+.           +.
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~i~~~~~~~~~~~~   76 (254)
T TIGR02415         2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAG---GKAVAYKLDVSDKDQVFSAIDQAAEKFG   76 (254)
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            6889998 9999999999999985  89999998766654444444211   11122111  12221           23


Q ss_pred             CCCEEEEecCCCcC-c--cccHHH---HHHhhH----HHHHHHHhhhhccCCCeEEEEEc
Q 018760          105 GSDLCIVTAGARQI-A--GESRLN---LLQRNL----SLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       105 ~aDiVIi~~g~~~~-~--g~~r~~---~~~~n~----~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ..|+||.++|.... +  ..+..+   .+..|.    .+++.+.+.+.+.+..+.++++|
T Consensus        77 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s  136 (254)
T TIGR02415        77 GFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA  136 (254)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence            56999999875321 1  122222   233343    34445566666655456666654

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK06182 short chain dehydrogenase; Validated

Probab=95.53  E-value=0.056  Score=49.93  Aligned_cols=38  Identities=21%  Similarity=0.344  Sum_probs=33.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      .++|.|+|+ |.+|..++..|++.|.  +|++.++++++++
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~l~   41 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDKME   41 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHH
Confidence            358999998 9999999999999885  8999999887664

>PRK08862 short chain dehydrogenase; Provisional

Probab=95.52  E-value=0.32  Score=43.94  Aligned_cols=114  Identities=10%  Similarity=0.072  Sum_probs=66.9

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc-----------c
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA-----------V  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~-----------a  102 (350)
                      .+.+.|+|+ +.+|..++..|++.|.  +|+++++++++++....++....   ........  ++.+           .
T Consensus         5 ~k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~i~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (227)
T PRK08862          5 SSIILITSAGSVLGRTISCHFARLGA--TLILCDQDQSALKDTYEQCSALT---DNVYSFQLKDFSQESIRHLFDAIEQQ   79 (227)
T ss_pred             CeEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC---CCeEEEEccCCCHHHHHHHHHHHHHH
Confidence            357889999 7899999999999996  89999999988776555554321   11111111  1211           1


Q ss_pred             cC-CCCEEEEecCCCcCc----cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 TA-GSDLCIVTAGARQIA----GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 l~-~aDiVIi~~g~~~~~----g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +. .-|++|..+|....+    ..+..+   .+..|    ..+.+...+.+.+....+.||++|.
T Consensus        80 ~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS  144 (227)
T PRK08862         80 FNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVIS  144 (227)
T ss_pred             hCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence            23 689999998642211    112111   12222    3344555666665444566777764

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.51  E-value=0.037  Score=55.19  Aligned_cols=70  Identities=19%  Similarity=0.402  Sum_probs=48.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c--cccCCCCE
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y--AVTAGSDL  108 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~--~al~~aDi  108 (350)
                      .+++|.|+|+|.+|..++..|...+.  +++++|.++++.+.    +....   ....+...  ++   +  ..+++||.
T Consensus       230 ~~~~iiIiG~G~~g~~l~~~L~~~~~--~v~vid~~~~~~~~----~~~~~---~~~~~i~gd~~~~~~L~~~~~~~a~~  300 (453)
T PRK09496        230 PVKRVMIVGGGNIGYYLAKLLEKEGY--SVKLIERDPERAEE----LAEEL---PNTLVLHGDGTDQELLEEEGIDEADA  300 (453)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHH----HHHHC---CCCeEEECCCCCHHHHHhcCCccCCE
Confidence            45799999999999999999988775  89999999986653    33221   01222211  12   2  24789999


Q ss_pred             EEEecC
Q 018760          109 CIVTAG  114 (350)
Q Consensus       109 VIi~~g  114 (350)
                      ||++.+
T Consensus       301 vi~~~~  306 (453)
T PRK09496        301 FIALTN  306 (453)
T ss_pred             EEECCC
Confidence            988753

>PRK06198 short chain dehydrogenase; Provisional

Probab=95.50  E-value=0.21  Score=45.54  Aligned_cols=114  Identities=16%  Similarity=0.180  Sum_probs=64.2

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCe-EEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEE-LALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----------  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~e-v~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----------  102 (350)
                      .++|.|+|| |.+|..++..|+..+.  + |++++++++.+.....++....   ........  ++.++          
T Consensus         6 ~k~vlItGa~g~iG~~la~~l~~~G~--~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~   80 (260)
T PRK06198          6 GKVALVTGGTQGLGAAIARAFAERGA--AGLVICGRNAEKGEAQAAELEALG---AKAVFVQADLSDVEDCRRVVAAADE   80 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHHHHhcC---CeEEEEEccCCCHHHHHHHHHHHHH
Confidence            468999999 8999999999998885  5 9999998766654333342111   11111111  12111          


Q ss_pred             -cCCCCEEEEecCCCcCc---cccHHH---HHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 -TAGSDLCIVTAGARQIA---GESRLN---LLQRNL----SLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 -l~~aDiVIi~~g~~~~~---g~~r~~---~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                       +.+.|+||.++|.....   ..+..+   .+..|.    .+++...+.+.+....+.++++|.
T Consensus        81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss  144 (260)
T PRK06198         81 AFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGS  144 (260)
T ss_pred             HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence             13689999998764321   112211   233333    334445555554433455666653

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.50  E-value=0.14  Score=51.10  Aligned_cols=75  Identities=19%  Similarity=0.211  Sum_probs=50.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-cC-CCCEEEEec
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-TA-GSDLCIVTA  113 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l~-~aDiVIi~~  113 (350)
                      +.++|.|+|+|.+|.+.+..|+..|.  +|.+.|.+.+........+...     ..++....+... +. ++|+||...
T Consensus         4 ~~k~v~v~G~g~~G~s~a~~l~~~G~--~V~~~d~~~~~~~~~~~~l~~~-----g~~~~~~~~~~~~~~~~~d~vV~s~   76 (447)
T PRK02472          4 QNKKVLVLGLAKSGYAAAKLLHKLGA--NVTVNDGKPFSENPEAQELLEE-----GIKVICGSHPLELLDEDFDLMVKNP   76 (447)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC--EEEEEcCCCccchhHHHHHHhc-----CCEEEeCCCCHHHhcCcCCEEEECC
Confidence            34589999999999999999999995  8999998764333222334321     223432223322 34 389999998


Q ss_pred             CCCc
Q 018760          114 GARQ  117 (350)
Q Consensus       114 g~~~  117 (350)
                      |.+.
T Consensus        77 gi~~   80 (447)
T PRK02472         77 GIPY   80 (447)
T ss_pred             CCCC
Confidence            8764

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=95.47  E-value=0.056  Score=50.58  Aligned_cols=99  Identities=16%  Similarity=0.203  Sum_probs=64.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCC-CEEEEecC
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGS-DLCIVTAG  114 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~a-DiVIi~~g  114 (350)
                      |+|.|+|+ |.+|+.++..|++.|.  +|+.+|+.........   .+.. + ....+.-.... +.++.+ |.||.+++
T Consensus         1 ~~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~---~~~~-~-~~~d~~~~~~~~~~~~~~~d~vih~aa   73 (314)
T COG0451           1 MRILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL---SGVE-F-VVLDLTDRDLVDELAKGVPDAVIHLAA   73 (314)
T ss_pred             CeEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc---cccc-e-eeecccchHHHHHHHhcCCCEEEEccc
Confidence            35999997 9999999999999875  9999999775543211   1100 0 00111100111 345566 99999987


Q ss_pred             CCcCccccH---HHHHHhhHHHHHHHHhhhhc
Q 018760          115 ARQIAGESR---LNLLQRNLSLFKAIIPPLVK  143 (350)
Q Consensus       115 ~~~~~g~~r---~~~~~~n~~i~~~i~~~i~~  143 (350)
                      ....++..+   .++...|+.-.+.+.+...+
T Consensus        74 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~  105 (314)
T COG0451          74 QSSVPDSNASDPAEFLDVNVDGTLNLLEAARA  105 (314)
T ss_pred             cCchhhhhhhCHHHHHHHHHHHHHHHHHHHHH
Confidence            554333322   34677899999999999888

>PLN02572 UDP-sulfoquinovose synthase

Probab=95.47  E-value=0.2  Score=50.23  Aligned_cols=118  Identities=19%  Similarity=0.290  Sum_probs=65.6

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccc-------hH------HHHHHHHHHhh-cCCCceEEEc-
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADK-------LR------GEMLDLQHAAA-FLPRTKILAS-   97 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~-------l~------~~~~dl~~~~~-~~~~~~v~~t-   97 (350)
                      ..+++||.|+|| |.+|++++..|+..|.  +|+++|....+       ++      .....+..... .....++... 
T Consensus        44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~D  121 (442)
T PLN02572         44 SSKKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGD  121 (442)
T ss_pred             cccCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECC
Confidence            335678999998 9999999999999985  89999853210       00      00011111000 0011222211 


Q ss_pred             -CCcc----ccC--CCCEEEEecCCCcCc-c-ccH---HHHHHhhHHHHHHHHhhhhccCCCeEEEEE
Q 018760           98 -VDYA----VTA--GSDLCIVTAGARQIA-G-ESR---LNLLQRNLSLFKAIIPPLVKYSPDCILLIV  153 (350)
Q Consensus        98 -~~~~----al~--~aDiVIi~~g~~~~~-g-~~r---~~~~~~n~~i~~~i~~~i~~~~p~a~viv~  153 (350)
                       +|.+    .++  ++|+||-+++....+ . .+.   ...+..|+.-...+.+.+.+++....+|.+
T Consensus       122 l~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~  189 (442)
T PLN02572        122 ICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKL  189 (442)
T ss_pred             CCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEE
Confidence             1222    244  479999987543211 1 111   223456888888888888877654444444

>PRK08265 short chain dehydrogenase; Provisional

Probab=95.46  E-value=0.19  Score=46.10  Aligned_cols=41  Identities=24%  Similarity=0.297  Sum_probs=34.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEM   79 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~   79 (350)
                      .+++.|+|+ |.+|..++..|++.|.  +|++.|+++++++...
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~   47 (261)
T PRK08265          6 GKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVA   47 (261)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHH
Confidence            358899998 9999999999999986  8999999987665433

>PRK07109 short chain dehydrogenase; Provisional

Probab=95.46  E-value=0.33  Score=46.62  Aligned_cols=113  Identities=12%  Similarity=0.114  Sum_probs=66.7

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------  102 (350)
                      .++|.|+|| |.+|..++..|+..|.  +|+++++++++++....++....   ........  +|.++           
T Consensus         8 ~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g---~~~~~v~~Dv~d~~~v~~~~~~~~~~   82 (334)
T PRK07109          8 RQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAG---GEALAVVADVADAEAVQAAADRAEEE   82 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            357899999 9999999999999985  89999999887776555554321   11111111  12221           


Q ss_pred             cCCCCEEEEecCCCcC-c--cccHHH---HHHh----hHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 TAGSDLCIVTAGARQI-A--GESRLN---LLQR----NLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~-~--g~~r~~---~~~~----n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +...|++|.++|.... +  ..+..+   .+.-    +....+.+.+.+.+.. .+.+|+++-
T Consensus        83 ~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~-~g~iV~isS  144 (334)
T PRK07109         83 LGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRD-RGAIIQVGS  144 (334)
T ss_pred             CCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEeCC
Confidence            2367999999875321 1  111111   1222    2445556666665543 355666653

>PRK07035 short chain dehydrogenase; Provisional

Probab=95.44  E-value=0.19  Score=45.54  Aligned_cols=47  Identities=19%  Similarity=0.169  Sum_probs=38.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHH
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH   84 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~   84 (350)
                      +.++|.|+|+ |.+|..++..|++.|.  +|+++|+++++++....++.+
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~   54 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKLDGCQAVADAIVA   54 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh
Confidence            3457899998 8999999999999985  899999988777655555543

>PRK07454 short chain dehydrogenase; Provisional

Probab=95.44  E-value=0.3  Score=43.95  Aligned_cols=44  Identities=25%  Similarity=0.385  Sum_probs=35.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL   82 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl   82 (350)
                      ++++.|+|+ |.+|..++..|++.|.  +|+++++++++++....++
T Consensus         6 ~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~   50 (241)
T PRK07454          6 MPRALITGASSGIGKATALAFAKAGW--DLALVARSQDALEALAAEL   50 (241)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHH
Confidence            457899998 9999999999999986  8999999887665443334

>PRK05717 oxidoreductase; Validated

Probab=95.43  E-value=0.032  Score=50.93  Aligned_cols=38  Identities=18%  Similarity=0.373  Sum_probs=32.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      .+++.|+|+ |.+|..++..|++.|.  +|+++|+++++.+
T Consensus        10 ~k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~   48 (255)
T PRK05717         10 GRVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGS   48 (255)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHH
Confidence            457999998 9999999999999885  8999999876554

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=95.43  E-value=0.15  Score=49.49  Aligned_cols=38  Identities=18%  Similarity=0.348  Sum_probs=32.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      .+|+|+|+|.+|.-.+..+...|. .+|+++|++++|++
T Consensus       170 ~~V~V~GaGpIGLla~~~a~~~Ga-~~Viv~d~~~~Rl~  207 (350)
T COG1063         170 GTVVVVGAGPIGLLAIALAKLLGA-SVVIVVDRSPERLE  207 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHH
Confidence            389999999999988766666664 68999999999886

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=95.43  E-value=0.057  Score=50.49  Aligned_cols=113  Identities=16%  Similarity=0.202  Sum_probs=65.3

Q ss_pred             eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccCC--CCEE
Q 018760           39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAG--SDLC  109 (350)
Q Consensus        39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~--aDiV  109 (350)
                      ||.|+|| |.+|..++..|+..+...+|+++|+......  ...+..... .....+...  +|.    +++++  +|+|
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~d~v   77 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGN--LENLADLED-NPRYRFVKGDIGDRELVSRLFTEHQPDAV   77 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchh--hhhhhhhcc-CCCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence            5899999 9999999999988763348888886432111  011111110 012222211  122    23555  8999


Q ss_pred             EEecCCCcC-c-cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          110 IVTAGARQI-A-GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       110 Ii~~g~~~~-~-g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |.+++.... . .......+..|+.-...+++.+.+...+..++.+|
T Consensus        78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~S  124 (317)
T TIGR01181        78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHIS  124 (317)
T ss_pred             EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence            999864321 1 12233456678888888888887764454455554

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK07806 short chain dehydrogenase; Provisional

Probab=95.42  E-value=0.17  Score=45.78  Aligned_cols=45  Identities=9%  Similarity=0.161  Sum_probs=33.7

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc-chHHHHHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD-KLRGEMLDLQ   83 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~-~l~~~~~dl~   83 (350)
                      .+++.|+|| |.+|..++..|+..|.  +|++++++.+ +++....++.
T Consensus         6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~   52 (248)
T PRK07806          6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIE   52 (248)
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHH
Confidence            358999998 9999999999999885  8999888653 3443333343

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=95.41  E-value=0.43  Score=44.06  Aligned_cols=46  Identities=17%  Similarity=0.354  Sum_probs=37.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      +.+++.|+|+ |.+|..++..|+..|.  +|+++|++++.++....++.
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~   55 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQEKAEAVVAEIK   55 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence            4467889998 8999999999999986  89999998876665555554

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.37  E-value=0.32  Score=43.71  Aligned_cols=75  Identities=17%  Similarity=0.315  Sum_probs=49.8

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----c-------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----V-------  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----a-------  102 (350)
                      .+++.|+|+ |.+|..++..|+..|.  +|+++++++++++....++....   ....+...  ++.+    .       
T Consensus         7 ~~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (239)
T PRK07666          7 GKNALITGAGRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEVEAYG---VKVVIATADVSDYEEVTAAIEQLKNE   81 (239)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC---CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            357999998 8999999999999885  89999998876654444443211   11222211  1111    1       


Q ss_pred             cCCCCEEEEecCCC
Q 018760          103 TAGSDLCIVTAGAR  116 (350)
Q Consensus       103 l~~aDiVIi~~g~~  116 (350)
                      +.+.|+||.++|..
T Consensus        82 ~~~id~vi~~ag~~   95 (239)
T PRK07666         82 LGSIDILINNAGIS   95 (239)
T ss_pred             cCCccEEEEcCccc
Confidence            23789999998764

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=95.36  E-value=0.32  Score=46.20  Aligned_cols=45  Identities=13%  Similarity=0.297  Sum_probs=36.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHH
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL   82 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl   82 (350)
                      +.++|.|+|+ |.+|..++..|+..|.  +|+++++++++++....++
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l   50 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNLKKAEAAAQEL   50 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHh
Confidence            3457999998 9999999999999984  8999999987776554444

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.33  E-value=0.04  Score=49.84  Aligned_cols=54  Identities=20%  Similarity=0.326  Sum_probs=38.1

Q ss_pred             cchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           15 LDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      .|...+....++....   ..+.++|+|.|.|+||+.++..|.+.|. ..|.+.|.+.
T Consensus         4 ~Gv~~~~~~~~~~~~~---~l~g~~vaIqGfGnVG~~~a~~L~~~G~-~vV~vsD~~g   57 (217)
T cd05211           4 YGVVVAMKAAMKHLGD---SLEGLTVAVQGLGNVGWGLAKKLAEEGG-KVLAVSDPDG   57 (217)
T ss_pred             hHHHHHHHHHHHHcCC---CcCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEEcCCC
Confidence            3444444333344432   3356799999999999999999999874 4677889876

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.30  E-value=0.15  Score=51.27  Aligned_cols=93  Identities=15%  Similarity=0.246  Sum_probs=59.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccc-hHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADK-LRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~-l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ..||.|+|.|..|.+++..|...|.  +|.++|.++.. ......++...     ...+....+. +.+.++|+||.+.|
T Consensus        14 ~~~i~v~G~G~sG~a~a~~L~~~G~--~V~~~D~~~~~~~~~~~~~l~~~-----gi~~~~~~~~~~~~~~~dlVV~Spg   86 (458)
T PRK01710         14 NKKVAVVGIGVSNIPLIKFLVKLGA--KVTAFDKKSEEELGEVSNELKEL-----GVKLVLGENYLDKLDGFDVIFKTPS   86 (458)
T ss_pred             CCeEEEEcccHHHHHHHHHHHHCCC--EEEEECCCCCccchHHHHHHHhC-----CCEEEeCCCChHHhccCCEEEECCC
Confidence            4589999999999999999999996  89999987532 11111223321     2334333332 55789999999988


Q ss_pred             CCcCccccHHHHHHhhHHHHHHH
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAI  137 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i  137 (350)
                      .+...- ........+++++.++
T Consensus        87 i~~~~p-~~~~a~~~~i~i~s~~  108 (458)
T PRK01710         87 MRIDSP-ELVKAKEEGAYITSEM  108 (458)
T ss_pred             CCCCch-HHHHHHHcCCcEEech
Confidence            764321 1222234567776554

>PRK14851 hypothetical protein; Provisional

Probab=95.29  E-value=0.065  Score=56.43  Aligned_cols=35  Identities=20%  Similarity=0.353  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      +..||+|+|+|.+|+.++..|+..|+ .+++|+|-|
T Consensus        42 ~~~~VlIvG~GGlGs~va~~Lar~GV-G~l~LvD~D   76 (679)
T PRK14851         42 AEAKVAIPGMGGVGGVHLITMVRTGI-GRFHIADFD   76 (679)
T ss_pred             hcCeEEEECcCHHHHHHHHHHHHhCC-CeEEEEcCC
Confidence            35799999999999999999999998 799999964

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.29  E-value=0.32  Score=43.84  Aligned_cols=46  Identities=24%  Similarity=0.403  Sum_probs=36.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      +..++.|+|+ |.+|..++..|++.|.  .|+++|+++++++....++.
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~~~   50 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQEKLEEAVAECG   50 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence            3458999998 9999999999999885  89999999877665444443

>PRK06444 prephenate dehydrogenase; Provisional

Probab=95.27  E-value=0.056  Score=48.12  Aligned_cols=27  Identities=15%  Similarity=0.301  Sum_probs=23.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELA   66 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~   66 (350)
                      |||+|||+ |.||+.++..|.+.|+  +|.
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~--~v~   28 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGL--GVY   28 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCC--EEE
Confidence            69999999 9999999999998885  553

>PRK07877 hypothetical protein; Provisional

Probab=95.25  E-value=0.06  Score=56.94  Aligned_cols=34  Identities=38%  Similarity=0.579  Sum_probs=31.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      ..||+|+|+| +|++++..|+..|++++|+|+|-|
T Consensus       107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D  140 (722)
T PRK07877        107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFD  140 (722)
T ss_pred             cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCC
Confidence            5689999998 999999999999977899999975

>PRK09135 pteridine reductase; Provisional

Probab=95.25  E-value=0.19  Score=45.14  Aligned_cols=45  Identities=18%  Similarity=0.287  Sum_probs=34.3

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc-cchHHHHHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA-DKLRGEMLDLQ   83 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~-~~l~~~~~dl~   83 (350)
                      .++|.|+|| |.+|++++..|++.+.  +|++++++. ++++....++.
T Consensus         6 ~~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~   52 (249)
T PRK09135          6 AKVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELN   52 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHH
Confidence            358999999 9999999999999885  899999853 33443333444

>PRK07062 short chain dehydrogenase; Provisional

Probab=95.25  E-value=0.27  Score=44.97  Aligned_cols=114  Identities=18%  Similarity=0.233  Sum_probs=66.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------c
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------T  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------l  103 (350)
                      ..+.|+|| |.+|..++..|++.|.  +|++.++++++++....++..... .........  +|.++           +
T Consensus         9 k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (265)
T PRK07062          9 RVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKFP-GARLLAARCDVLDEADVAAFAAAVEARF   85 (265)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhCC-CceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            47889999 8999999999999985  899999998887765555543311 001111111  12211           2


Q ss_pred             CCCCEEEEecCCCcCc---cccHHH---HHHh----hHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 AGSDLCIVTAGARQIA---GESRLN---LLQR----NLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~---g~~r~~---~~~~----n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ...|++|.++|.....   ..+..+   .+..    .....+.+.+.+++.. .+.++++|-
T Consensus        86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS  146 (265)
T PRK07062         86 GGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASA-AASIVCVNS  146 (265)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC-CcEEEEecc
Confidence            4579999998864211   111111   1222    2344566666666543 355666653

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=95.24  E-value=0.17  Score=48.82  Aligned_cols=39  Identities=28%  Similarity=0.462  Sum_probs=27.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      .++++||+|+|+|.+|...+..+.+.+-+.-+.+.|.+.
T Consensus         2 ~~~~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~   40 (338)
T PLN02358          2 ADKKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFI   40 (338)
T ss_pred             CCCceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCC
Confidence            344689999999999999888877654232334455443

>PRK09186 flagellin modification protein A; Provisional

Probab=95.24  E-value=0.37  Score=43.67  Aligned_cols=45  Identities=22%  Similarity=0.298  Sum_probs=37.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      .++|.|+|+ |.+|..++..|+..+.  +|++.++++++++....++.
T Consensus         4 ~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l~   49 (256)
T PRK09186          4 GKTILITGAGGLIGSALVKAILEAGG--IVIAADIDKEALNELLESLG   49 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecChHHHHHHHHHHH
Confidence            468999999 8999999999999985  89999999887765555553

>PRK06197 short chain dehydrogenase; Provisional

Probab=95.23  E-value=0.22  Score=46.86  Aligned_cols=116  Identities=16%  Similarity=0.140  Sum_probs=66.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc-----------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA-----------  101 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~-----------  101 (350)
                      +.++|.|+|| |.+|..++..|++.|.  +|+++++++++++....++..... .....+...  +|.+           
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~   91 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAATP-GADVTLQELDLTSLASVRAAADALRA   91 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCHHHHHHHHHHHHh
Confidence            3457899998 9999999999999985  899999988776654445542210 011122111  1111           


Q ss_pred             ccCCCCEEEEecCCCcCcc-cc---HHHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          102 VTAGSDLCIVTAGARQIAG-ES---RLNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       102 al~~aDiVIi~~g~~~~~g-~~---r~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      .+...|+||.++|....+. .+   -...+..|    ..+.+.+.+.+.+.. .+.+|++|.
T Consensus        92 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS  152 (306)
T PRK06197         92 AYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP-GSRVVTVSS  152 (306)
T ss_pred             hCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC-CCEEEEECC
Confidence            1235799999987532111 11   11123333    333566666666543 345666653

>PRK05872 short chain dehydrogenase; Provisional

Probab=95.22  E-value=0.23  Score=46.61  Aligned_cols=45  Identities=24%  Similarity=0.377  Sum_probs=37.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHH
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL   82 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl   82 (350)
                      +..++.|+|+ |.+|..++..|+..|.  +|++.++++++++....++
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l   53 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAEL   53 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh
Confidence            3457999998 8999999999999995  8999999988776544444

>PRK08324 short chain dehydrogenase; Validated

Probab=95.22  E-value=0.18  Score=53.38  Aligned_cols=113  Identities=18%  Similarity=0.213  Sum_probs=65.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----c------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----V------  102 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----a------  102 (350)
                      +.++|.|+|+ |.+|..++..|+..|.  +|+++|+++++++.....+....    .......  ++.+    .      
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~~----~v~~v~~Dvtd~~~v~~~~~~~~~  494 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGPD----RALGVACDVTDEAAVQAAFEEAAL  494 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhccC----cEEEEEecCCCHHHHHHHHHHHHH
Confidence            4468999997 9999999999999885  89999999877664444443210    1111111  1211    1      


Q ss_pred             -cCCCCEEEEecCCCcCc---cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEc
Q 018760          103 -TAGSDLCIVTAGARQIA---GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       103 -l~~aDiVIi~~g~~~~~---g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                       ..+.|+||.++|.....   ..+..+   .+..|    ..+++...+.+++....+.+++++
T Consensus       495 ~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs  557 (681)
T PRK08324        495 AFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA  557 (681)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence             23689999998854321   111111   12223    444555555555544335566665

>PRK09072 short chain dehydrogenase; Provisional

Probab=95.19  E-value=0.24  Score=45.35  Aligned_cols=75  Identities=24%  Similarity=0.364  Sum_probs=49.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----------  102 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----------  102 (350)
                      +..+|.|+|+ |.+|..++..|+..|.  +|+++++++++++....++..    .....+...  +|.+.          
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~D~~d~~~~~~~~~~~~~   77 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPY----PGRHRWVVADLTSEAGREAVLARARE   77 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhc----CCceEEEEccCCCHHHHHHHHHHHHh
Confidence            4468999998 9999999999999985  899999998766544333311    111222211  12111          


Q ss_pred             cCCCCEEEEecCCC
Q 018760          103 TAGSDLCIVTAGAR  116 (350)
Q Consensus       103 l~~aDiVIi~~g~~  116 (350)
                      +...|+||.++|..
T Consensus        78 ~~~id~lv~~ag~~   91 (263)
T PRK09072         78 MGGINVLINNAGVN   91 (263)
T ss_pred             cCCCCEEEECCCCC
Confidence            24579999998764

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.18  E-value=0.2  Score=50.21  Aligned_cols=117  Identities=18%  Similarity=0.210  Sum_probs=65.9

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc-chHHHHHHHHHHhhcCCCceEEEcCCcc------ccCCCCEEEE
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD-KLRGEMLDLQHAAAFLPRTKILASVDYA------VTAGSDLCIV  111 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~-~l~~~~~dl~~~~~~~~~~~v~~t~~~~------al~~aDiVIi  111 (350)
                      ||.|||+|..|.+.|..|...|.  +|.++|.++. ........|...     ..++....+.+      .+.+.|.||.
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~--~V~~~D~~~~~~~~~~~~~l~~~-----gi~~~~g~~~~~~~~~~~~~~~d~vv~   74 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGW--EVVVSDRNDSPELLERQQELEQE-----GITVKLGKPLELESFQPWLDQPDLVVV   74 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHHHHHHc-----CCEEEECCccchhhhhHHhhcCCEEEE
Confidence            79999999999999999999996  8999998653 222111123321     22343222222      4678999999


Q ss_pred             ecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEE--cCCcchHHHHH
Q 018760          112 TAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV--ANPVDILTYVA  164 (350)
Q Consensus       112 ~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~--tNP~~~~~~~~  164 (350)
                      +.|.+...- ........+++++.++........ +..+|-+  ||-=..++.++
T Consensus        75 s~gi~~~~~-~~~~a~~~~i~v~~~~~~~~~~~~-~~~~I~VTGT~GKTTTt~ml  127 (459)
T PRK02705         75 SPGIPWDHP-TLVELRERGIEVIGEIELAWRALK-HIPWVGITGTNGKTTVTALL  127 (459)
T ss_pred             CCCCCCCCH-HHHHHHHcCCcEEEhHHHHHHhhc-CCCEEEEeCCCchHHHHHHH
Confidence            888764221 111222346666666544333222 2224444  45444444433

>PRK06125 short chain dehydrogenase; Provisional

Probab=95.17  E-value=0.28  Score=44.82  Aligned_cols=113  Identities=19%  Similarity=0.214  Sum_probs=66.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-------cccCCC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-------AVTAGS  106 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-------~al~~a  106 (350)
                      .+++.|+|+ |.+|..++..|+..|.  +|+++++++++++....++.....  ....+...  ++.       +.+...
T Consensus         7 ~k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~D~~~~~~~~~~~~~~g~i   82 (259)
T PRK06125          7 GKRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAHG--VDVAVHALDLSSPEAREQLAAEAGDI   82 (259)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhcC--CceEEEEecCCCHHHHHHHHHHhCCC
Confidence            468899998 8999999999999886  899999998877655555543211  11111111  121       124568


Q ss_pred             CEEEEecCCCcC-c--cccH---HHHHHhhH----HHHHHHHhhhhccCCCeEEEEEc
Q 018760          107 DLCIVTAGARQI-A--GESR---LNLLQRNL----SLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       107 DiVIi~~g~~~~-~--g~~r---~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |++|.++|.... +  ..+.   ...+..|+    .+.+.+.+.+.+.. .+.++++|
T Consensus        83 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~is  139 (259)
T PRK06125         83 DILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG-SGVIVNVI  139 (259)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEec
Confidence            999999876421 1  1111   11233333    34555556665543 34566655

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=95.16  E-value=0.12  Score=46.49  Aligned_cols=40  Identities=28%  Similarity=0.399  Sum_probs=33.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHH
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRG   77 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~   77 (350)
                      +.+++.|+|| |.+|..++..|++.+.  .|++.+++.++++.
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~~~~~~   45 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRVEKLEA   45 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHH
Confidence            3468999998 9999999999999985  78888888776654

>PLN02253 xanthoxin dehydrogenase

Probab=95.16  E-value=0.1  Score=48.36  Aligned_cols=41  Identities=17%  Similarity=0.203  Sum_probs=33.9

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEM   79 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~   79 (350)
                      .+++.|+|+ |.+|..++..|+..|.  +|+++|++++..+...
T Consensus        18 ~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~   59 (280)
T PLN02253         18 GKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVC   59 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHH
Confidence            457999998 9999999999999985  8999999876555433

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=95.15  E-value=0.029  Score=46.03  Aligned_cols=73  Identities=25%  Similarity=0.326  Sum_probs=44.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      |||+|+|+ |.||+.++..+.+..-..=+..+|++++...+  .|+.+..... ...+..++++ +.+..+|+||-..
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g--~d~g~~~~~~-~~~~~v~~~l~~~~~~~DVvIDfT   75 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVG--KDVGELAGIG-PLGVPVTDDLEELLEEADVVIDFT   75 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTT--SBCHHHCTSS-T-SSBEBS-HHHHTTH-SEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCccccc--chhhhhhCcC-CcccccchhHHHhcccCCEEEEcC
Confidence            69999999 99999999999985432224557887632222  2343332211 2233345676 4577899988874

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK05993 short chain dehydrogenase; Provisional

Probab=95.12  E-value=0.059  Score=50.05  Aligned_cols=37  Identities=14%  Similarity=0.283  Sum_probs=32.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      ++|.|+|| |.+|..++..|++.|.  +|++.++++++++
T Consensus         5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~~~   42 (277)
T PRK05993          5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKEEDVA   42 (277)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHH
Confidence            47899999 9999999999999885  8999999887664

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=95.10  E-value=0.079  Score=40.32  Aligned_cols=35  Identities=26%  Similarity=0.483  Sum_probs=29.9

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeC
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDA   70 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~   70 (350)
                      .+..|++|+|+|.+|..++..|.+.+ ..+|.++|+
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~-~~~v~v~~r   55 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEG-GKKVVLCDR   55 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence            44569999999999999999998875 358999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=95.09  E-value=0.38  Score=43.49  Aligned_cols=47  Identities=19%  Similarity=0.271  Sum_probs=38.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHH
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH   84 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~   84 (350)
                      +.++|.|+|+ |.+|..++..|++.|.  +|+++|++.+.++....++.+
T Consensus        11 ~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~   58 (247)
T PRK08945         11 KDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEA   58 (247)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHh
Confidence            4568999998 9999999999999885  899999998777655555553

>PRK06914 short chain dehydrogenase; Provisional

Probab=95.09  E-value=0.28  Score=45.31  Aligned_cols=43  Identities=9%  Similarity=0.145  Sum_probs=34.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHH
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL   82 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl   82 (350)
                      ..+.|+|| |.+|..++..|+..|.  +|++++++++.++.....+
T Consensus         4 k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~   47 (280)
T PRK06914          4 KIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNPEKQENLLSQA   47 (280)
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHH
Confidence            36889998 9999999999999985  8999999887665443333

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=95.09  E-value=0.12  Score=48.24  Aligned_cols=105  Identities=10%  Similarity=0.140  Sum_probs=46.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHH-HhhcCCCceEEEcCCc----cccCCCCEEE
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH-AAAFLPRTKILASVDY----AVTAGSDLCI  110 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~-~~~~~~~~~v~~t~~~----~al~~aDiVI  110 (350)
                      .+.||+.||.|.+-.+........+....+.-+|++++..+ .+..+-. ........++. +.|.    .++++.|+|+
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~-~a~~lv~~~~~L~~~m~f~-~~d~~~~~~dl~~~DvV~  197 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANE-LARRLVASDLGLSKRMSFI-TADVLDVTYDLKEYDVVF  197 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHH-HHHHHHH---HH-SSEEEE-ES-GGGG-GG----SEEE
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHH-HHHHHHhhcccccCCeEEE-ecchhccccccccCCEEE
Confidence            45699999999986665444333333347889999998654 3333332 11122234554 3342    3578999999


Q ss_pred             EecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEE
Q 018760          111 VTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV  153 (350)
Q Consensus       111 i~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~  153 (350)
                      +++-+..    +.    ....+++..+++.|.   |++.+++=
T Consensus       198 lAalVg~----~~----e~K~~Il~~l~~~m~---~ga~l~~R  229 (276)
T PF03059_consen  198 LAALVGM----DA----EPKEEILEHLAKHMA---PGARLVVR  229 (276)
T ss_dssp             E-TT-S------------SHHHHHHHHHHHS----TTSEEEEE
T ss_pred             Ehhhccc----cc----chHHHHHHHHHhhCC---CCcEEEEe
Confidence            9964331    10    113455555555444   56655443

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=95.09  E-value=0.11  Score=49.75  Aligned_cols=116  Identities=22%  Similarity=0.291  Sum_probs=68.7

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      ...+++.|||.|.+|+.+|..+..-|  -+|+.+|+.+. -+     .....      ..... +. +.++.||+|++..
T Consensus       144 l~gktvGIiG~GrIG~avA~r~~~Fg--m~v~y~~~~~~-~~-----~~~~~------~~~y~-~l~ell~~sDii~l~~  208 (324)
T COG1052         144 LRGKTLGIIGLGRIGQAVARRLKGFG--MKVLYYDRSPN-PE-----AEKEL------GARYV-DLDELLAESDIISLHC  208 (324)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHhcCC--CEEEEECCCCC-hH-----HHhhc------Cceec-cHHHHHHhCCEEEEeC
Confidence            44679999999999999999888444  59999999874 21     11111      11112 24 5699999999986


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecC
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGT  180 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~  180 (350)
                      +...   +++ .++  |.       +.+++..|.+++||++--.=+-..++.+.  +...++-|.|.
T Consensus       209 Plt~---~T~-hLi--n~-------~~l~~mk~ga~lVNtaRG~~VDe~ALi~A--L~~g~i~gagl  260 (324)
T COG1052         209 PLTP---ETR-HLI--NA-------EELAKMKPGAILVNTARGGLVDEQALIDA--LKSGKIAGAGL  260 (324)
T ss_pred             CCCh---HHh-hhc--CH-------HHHHhCCCCeEEEECCCccccCHHHHHHH--HHhCCcceEEe
Confidence            4211   111 111  22       23344478899999975433333333333  22345555543

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.08  E-value=0.047  Score=56.31  Aligned_cols=126  Identities=13%  Similarity=0.177  Sum_probs=73.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEE-Ec-CCc-----cccCCCCEEE
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKIL-AS-VDY-----AVTAGSDLCI  110 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~-~t-~~~-----~al~~aDiVI  110 (350)
                      .+|.|+|+|.+|+.++..|.+.+.  +++++|.|+++.+.    +.+..     .++. .. +|.     ..+++||.|+
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~--~vvvId~d~~~~~~----~~~~g-----~~~i~GD~~~~~~L~~a~i~~a~~vi  486 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGI--PLVVIETSRTRVDE----LRERG-----IRAVLGNAANEEIMQLAHLDCARWLL  486 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCC--CEEEEECCHHHHHH----HHHCC-----CeEEEcCCCCHHHHHhcCccccCEEE
Confidence            579999999999999999999885  89999999987653    33211     1222 11 121     2378999988


Q ss_pred             EecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc-CCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHH
Q 018760          111 VTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA-NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRF  189 (350)
Q Consensus       111 i~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t-NP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~  189 (350)
                      ++.+..           .+|..++.    .+++.+|+..++.-. ||.  ..+.+ +..|.  +.++    +. ..-..+
T Consensus       487 v~~~~~-----------~~~~~iv~----~~~~~~~~~~iiar~~~~~--~~~~l-~~~Ga--d~vv----~p-~~~~a~  541 (558)
T PRK10669        487 LTIPNG-----------YEAGEIVA----SAREKRPDIEIIARAHYDD--EVAYI-TERGA--NQVV----MG-EREIAR  541 (558)
T ss_pred             EEcCCh-----------HHHHHHHH----HHHHHCCCCeEEEEECCHH--HHHHH-HHcCC--CEEE----Ch-HHHHHH
Confidence            885321           12333332    334446776655554 442  22223 34554  4665    12 233455


Q ss_pred             HHHHHcCCCC
Q 018760          190 LLADHLDVNA  199 (350)
Q Consensus       190 ~la~~l~v~p  199 (350)
                      .+++.+..+.
T Consensus       542 ~i~~~l~~~~  551 (558)
T PRK10669        542 TMLELLETPP  551 (558)
T ss_pred             HHHHHhcCCC
Confidence            5666665433

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=95.08  E-value=0.087  Score=49.67  Aligned_cols=97  Identities=14%  Similarity=0.196  Sum_probs=59.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccC--CCCEEEEec
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTA--GSDLCIVTA  113 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~--~aDiVIi~~  113 (350)
                      |||.|+|+ |.+|++++..|+..+   +|+.+|+......+   |+.+.            ... +.++  ++|+||-++
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~~~~~---Dl~d~------------~~~~~~~~~~~~D~Vih~A   62 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHSTDYCG---DFSNP------------EGVAETVRKIRPDVIVNAA   62 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC---CEEEeccccccccC---CCCCH------------HHHHHHHHhcCCCEEEECC
Confidence            68999998 999999999998887   57888875321100   11110            011 2233  589999987


Q ss_pred             CCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          114 GARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       114 g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +.....  ..........|+.-...+++.+.+..  ..+|.+|
T Consensus        63 a~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g--~~~v~~S  103 (299)
T PRK09987         63 AHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG--AWVVHYS  103 (299)
T ss_pred             ccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC--CeEEEEc
Confidence            643211  11223334568888888888887764  2455444

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=95.08  E-value=0.054  Score=52.12  Aligned_cols=36  Identities=14%  Similarity=0.362  Sum_probs=29.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      ++||+|.|+|.+|+.+...|.+++.-.++.++-+|.
T Consensus         1 ~~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind   36 (336)
T PRK13535          1 TIRVAINGFGRIGRNVLRALYESGRRAEITVVAINE   36 (336)
T ss_pred             CeEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecC
Confidence            369999999999999999888875436788886654

>PRK07831 short chain dehydrogenase; Provisional

Probab=95.07  E-value=0.4  Score=43.83  Aligned_cols=46  Identities=20%  Similarity=0.287  Sum_probs=37.2

Q ss_pred             CCeEEEEcC-C-hhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHH
Q 018760           37 HTKISVIGT-G-NVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH   84 (350)
Q Consensus        37 ~~KI~IIGA-G-~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~   84 (350)
                      .+++.|+|+ | .+|..++..|+..|.  +|++.|+++++++....++..
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~   64 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHERRLGETADELAA   64 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHH
Confidence            468999998 6 699999999999985  799999988877655555543

>PRK06940 short chain dehydrogenase; Provisional

Probab=95.03  E-value=0.2  Score=46.50  Aligned_cols=72  Identities=22%  Similarity=0.265  Sum_probs=45.1

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----------cCCC
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----------TAGS  106 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----------l~~a  106 (350)
                      .+.|.|+|.+|..++..|. .|  .+|++.|+++++++....++....   ....+...  +|.++          +...
T Consensus         4 ~~lItGa~gIG~~la~~l~-~G--~~Vv~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i   77 (275)
T PRK06940          4 VVVVIGAGGIGQAIARRVG-AG--KKVLLADYNEENLEAAAKTLREAG---FDVSTQEVDVSSRESVKALAATAQTLGPV   77 (275)
T ss_pred             EEEEECCChHHHHHHHHHh-CC--CEEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence            4566788999999999886 56  489999998877665444444211   11111111  12111          2357


Q ss_pred             CEEEEecCCC
Q 018760          107 DLCIVTAGAR  116 (350)
Q Consensus       107 DiVIi~~g~~  116 (350)
                      |++|.++|..
T Consensus        78 d~li~nAG~~   87 (275)
T PRK06940         78 TGLVHTAGVS   87 (275)
T ss_pred             CEEEECCCcC
Confidence            9999999864

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.03  E-value=0.21  Score=50.45  Aligned_cols=93  Identities=13%  Similarity=0.169  Sum_probs=59.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC-ccccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD-YAVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~-~~al~~aDiVIi~~g  114 (350)
                      ..+||.|+|+|..|.+++..|...|.  +|..+|.+.....    ++....    ..++....+ .+.+.++|+||.+.|
T Consensus        14 ~~~~v~v~G~G~sG~a~a~~L~~~G~--~V~~~D~~~~~~~----~~l~~~----gi~~~~~~~~~~~~~~~d~vV~Spg   83 (473)
T PRK00141         14 LSGRVLVAGAGVSGRGIAAMLSELGC--DVVVADDNETARH----KLIEVT----GVADISTAEASDQLDSFSLVVTSPG   83 (473)
T ss_pred             cCCeEEEEccCHHHHHHHHHHHHCCC--EEEEECCChHHHH----HHHHhc----CcEEEeCCCchhHhcCCCEEEeCCC
Confidence            44589999999999999999999996  8999997654221    221111    233432222 245788999999988


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHh
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIP  139 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~  139 (350)
                      .+...- ........+++++.++.-
T Consensus        84 i~~~~p-~~~~a~~~gi~v~~~~el  107 (473)
T PRK00141         84 WRPDSP-LLVDAQSQGLEVIGDVEL  107 (473)
T ss_pred             CCCCCH-HHHHHHHCCCceeeHHHH
Confidence            874321 122223445666665553

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=95.03  E-value=0.24  Score=44.54  Aligned_cols=127  Identities=21%  Similarity=0.241  Sum_probs=71.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc-cchHHHHHHHHHHhhcCCCceEEE-cCCccccCCCCEEEEec
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA-DKLRGEMLDLQHAAAFLPRTKILA-SVDYAVTAGSDLCIVTA  113 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~-~~l~~~~~dl~~~~~~~~~~~v~~-t~~~~al~~aDiVIi~~  113 (350)
                      +.+||+|||+|.+|.-=+..|+..|-  +|+++.... +.+.    .+....    ...... .-+.+.+.++++||.+.
T Consensus        11 ~~k~VlvvGgG~va~rKa~~ll~~ga--~v~Vvs~~~~~el~----~~~~~~----~i~~~~~~~~~~~~~~~~lviaAt   80 (210)
T COG1648          11 EGKKVLVVGGGSVALRKARLLLKAGA--DVTVVSPEFEPELK----ALIEEG----KIKWIEREFDAEDLDDAFLVIAAT   80 (210)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCC--EEEEEcCCccHHHH----HHHHhc----CcchhhcccChhhhcCceEEEEeC
Confidence            45699999999999999999999994  788887654 2222    222211    111211 11235678899999985


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEE-cCCc--chHHHHHHHHhCCCCCcEeeecCCccHHHHHHH
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV-ANPV--DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFL  190 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~-tNP~--~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~  190 (350)
                      ..               -+.-+.+++..++++   +.+|+ ..|.  +++.+...+..++    .|++.|.--+-++-+.
T Consensus        81 ~d---------------~~ln~~i~~~a~~~~---i~vNv~D~p~~~~f~~Pa~~~r~~l----~iaIsT~G~sP~la~~  138 (210)
T COG1648          81 DD---------------EELNERIAKAARERR---ILVNVVDDPELCDFIFPAIVDRGPL----QIAISTGGKSPVLARL  138 (210)
T ss_pred             CC---------------HHHHHHHHHHHHHhC---CceeccCCcccCceecceeeccCCe----EEEEECCCCChHHHHH
Confidence            32               222233344434332   34444 3454  6666665444333    4577666544444444


Q ss_pred             HHHH
Q 018760          191 LADH  194 (350)
Q Consensus       191 la~~  194 (350)
                      +-++
T Consensus       139 ir~~  142 (210)
T COG1648         139 LREK  142 (210)
T ss_pred             HHHH
Confidence            4333

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=95.03  E-value=0.077  Score=50.65  Aligned_cols=92  Identities=17%  Similarity=0.259  Sum_probs=58.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      +-..++|+|||.|++|+.+|..+..-|.  +|..||+.....        + .    ...   ..+. +.++.||+|++.
T Consensus       142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm--~V~~~d~~~~~~--------~-~----~~~---~~~l~ell~~sDvv~lh  203 (311)
T PRK08410        142 EIKGKKWGIIGLGTIGKRVAKIAQAFGA--KVVYYSTSGKNK--------N-E----EYE---RVSLEELLKTSDIISIH  203 (311)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhhcCC--EEEEECCCcccc--------c-c----Cce---eecHHHHhhcCCEEEEe
Confidence            3456799999999999999988876665  899999853210        0 0    111   1245 568999999998


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      .....   +++ .++  |.       +.+....|++++||++--
T Consensus       204 ~Plt~---~T~-~li--~~-------~~~~~Mk~~a~lIN~aRG  234 (311)
T PRK08410        204 APLNE---KTK-NLI--AY-------KELKLLKDGAILINVGRG  234 (311)
T ss_pred             CCCCc---hhh-ccc--CH-------HHHHhCCCCeEEEECCCc
Confidence            64221   111 111  11       223334689999999844

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.02  E-value=0.21  Score=50.21  Aligned_cols=72  Identities=19%  Similarity=0.358  Sum_probs=50.6

Q ss_pred             CCCeEEEEcCChhHHH-HHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMA-IAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~-~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g  114 (350)
                      +.+||.|+|.|..|.+ +|..|...|.  +|...|.+....   ..+|...     ...+....+.+.+.++|+||.+.|
T Consensus         6 ~~~~v~viG~G~sG~s~~a~~L~~~G~--~V~~~D~~~~~~---~~~l~~~-----gi~~~~~~~~~~~~~~d~vv~spg   75 (461)
T PRK00421          6 RIKRIHFVGIGGIGMSGLAEVLLNLGY--KVSGSDLKESAV---TQRLLEL-----GAIIFIGHDAENIKDADVVVYSSA   75 (461)
T ss_pred             CCCEEEEEEEchhhHHHHHHHHHhCCC--eEEEECCCCChH---HHHHHHC-----CCEEeCCCCHHHCCCCCEEEECCC
Confidence            3458999999999999 7889999996  899999876421   1234321     223332223355778999999988


Q ss_pred             CCc
Q 018760          115 ARQ  117 (350)
Q Consensus       115 ~~~  117 (350)
                      .|.
T Consensus        76 i~~   78 (461)
T PRK00421         76 IPD   78 (461)
T ss_pred             CCC
Confidence            874

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=95.02  E-value=0.091  Score=48.72  Aligned_cols=93  Identities=14%  Similarity=0.204  Sum_probs=58.7

Q ss_pred             eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccC--CCCEEEEecC
Q 018760           39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTA--GSDLCIVTAG  114 (350)
Q Consensus        39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~--~aDiVIi~~g  114 (350)
                      ||.|+|+ |.+|++++..|++.|.  +|+++++...       |+.+..            +. ++++  +.|+||.+++
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~~-------d~~~~~------------~~~~~~~~~~~d~vi~~a~   59 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQL-------DLTDPE------------ALERLLRAIRPDAVVNTAA   59 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCccc-------CCCCHH------------HHHHHHHhCCCCEEEECCc
Confidence            6899998 9999999999999884  8999887521       111100            11 2233  3499999887


Q ss_pred             CCcCcc--ccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          115 ARQIAG--ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       115 ~~~~~g--~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ......  .........|......+++.+.+...  .+|.+|
T Consensus        60 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S   99 (287)
T TIGR01214        60 YTDVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS   99 (287)
T ss_pred             cccccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence            532211  12344556677777888877776543  344444

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK05599 hypothetical protein; Provisional

Probab=95.02  E-value=0.19  Score=45.72  Aligned_cols=115  Identities=15%  Similarity=0.261  Sum_probs=66.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------ccc
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------AVT  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~al  103 (350)
                      |.+.|+|+ +.+|..++..|++ +  ..|++.++++++++....++.....  ........  +|.           +..
T Consensus         1 ~~vlItGas~GIG~aia~~l~~-g--~~Vil~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   75 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLCH-G--EDVVLAARRPEAAQGLASDLRQRGA--TSVHVLSFDAQDLDTHRELVKQTQELA   75 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHhC-C--CEEEEEeCCHHHHHHHHHHHHhccC--CceEEEEcccCCHHHHHHHHHHHHHhc
Confidence            45789999 8899999999884 6  4899999999888766666654211  01111111  111           112


Q ss_pred             CCCCEEEEecCCCcCcc---ccH---HHHHH----hhHHHHHHHHhhhhccCCCeEEEEEcCCc
Q 018760          104 AGSDLCIVTAGARQIAG---ESR---LNLLQ----RNLSLFKAIIPPLVKYSPDCILLIVANPV  157 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~g---~~r---~~~~~----~n~~i~~~i~~~i~~~~p~a~viv~tNP~  157 (350)
                      ..-|++|.++|......   .+.   .+...    .+..+.+.+.+.+.+...++.||++|.-.
T Consensus        76 g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~  139 (246)
T PRK05599         76 GEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIA  139 (246)
T ss_pred             CCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence            46799999988642111   111   11121    22333445556665544456777776543

>PRK06180 short chain dehydrogenase; Provisional

Probab=95.01  E-value=0.46  Score=43.94  Aligned_cols=38  Identities=16%  Similarity=0.137  Sum_probs=33.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      +++|.|+|+ |.+|..++..|+..|.  +|+++++++++++
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~   42 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAARA   42 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHHHH
Confidence            357999999 9999999999999885  8999999887654

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=94.99  E-value=0.037  Score=50.67  Aligned_cols=74  Identities=23%  Similarity=0.380  Sum_probs=48.4

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEE---cC---Cc-ccc-C
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA---SV---DY-AVT-A  104 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~---t~---~~-~al-~  104 (350)
                      +.+++||.|+|| |.+|+.++..|+..+.  +|+++.++++++...   +.. .   ....+..   +.   +. +.+ .
T Consensus        14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~---~~~-~---~~~~~~~~Dl~d~~~~l~~~~~~   84 (251)
T PLN00141         14 NVKTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAKTS---LPQ-D---PSLQIVRADVTEGSDKLVEAIGD   84 (251)
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHHHh---ccc-C---CceEEEEeeCCCCHHHHHHHhhc
Confidence            445789999998 9999999999999885  888888877654321   111 0   1122221   11   11 345 6


Q ss_pred             CCCEEEEecCCC
Q 018760          105 GSDLCIVTAGAR  116 (350)
Q Consensus       105 ~aDiVIi~~g~~  116 (350)
                      ++|+||.++|..
T Consensus        85 ~~d~vi~~~g~~   96 (251)
T PLN00141         85 DSDAVICATGFR   96 (251)
T ss_pred             CCCEEEECCCCC
Confidence            899999987753

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=94.99  E-value=0.22  Score=44.99  Aligned_cols=35  Identities=14%  Similarity=0.150  Sum_probs=30.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      +.++|.|+|| |.+|..++..|++.|.  +|+++++++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~   39 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSE   39 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCch
Confidence            3468999999 8999999999999985  899999865

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK09291 short chain dehydrogenase; Provisional

Probab=94.98  E-value=0.22  Score=45.17  Aligned_cols=74  Identities=12%  Similarity=0.113  Sum_probs=47.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccC-CCCEE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTA-GSDLC  109 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~-~aDiV  109 (350)
                      ++|.|+|| |.+|..++..|++.|.  +|++.+++++.++.........   .....+...  ++.    +++. ..|+|
T Consensus         3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~id~v   77 (257)
T PRK09291          3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARR---GLALRVEKLDLTDAIDRAQAAEWDVDVL   77 (257)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc---CCcceEEEeeCCCHHHHHHHhcCCCCEE
Confidence            47999999 9999999999999985  8999999876554322222211   112222211  122    1233 79999


Q ss_pred             EEecCCC
Q 018760          110 IVTAGAR  116 (350)
Q Consensus       110 Ii~~g~~  116 (350)
                      |.++|..
T Consensus        78 i~~ag~~   84 (257)
T PRK09291         78 LNNAGIG   84 (257)
T ss_pred             EECCCcC
Confidence            9998764

>PRK09134 short chain dehydrogenase; Provisional

Probab=94.97  E-value=0.26  Score=45.02  Aligned_cols=47  Identities=19%  Similarity=0.273  Sum_probs=33.9

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeC-CccchHHHHHHH
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDA-KADKLRGEMLDL   82 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~-~~~~l~~~~~dl   82 (350)
                      +...+++.|+|| |.+|..++..|++.+.  ++++.+. +.++++.....+
T Consensus         6 ~~~~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~   54 (258)
T PRK09134          6 MAAPRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNRSRDEAEALAAEI   54 (258)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHH
Confidence            445568999999 8999999999999885  7877765 444444333333

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=94.95  E-value=0.071  Score=45.73  Aligned_cols=66  Identities=17%  Similarity=0.234  Sum_probs=42.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEec
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTA  113 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~  113 (350)
                      +..+|+|||.|+-|.+.|..|-.+|+  +|++-.+...+-.    +......|    ++.  +-.|+++.||+|++..
T Consensus         3 ~~k~IAViGyGsQG~a~AlNLrDSG~--~V~Vglr~~s~s~----~~A~~~Gf----~v~--~~~eAv~~aDvV~~L~   68 (165)
T PF07991_consen    3 KGKTIAVIGYGSQGHAHALNLRDSGV--NVIVGLREGSASW----EKAKADGF----EVM--SVAEAVKKADVVMLLL   68 (165)
T ss_dssp             CTSEEEEES-SHHHHHHHHHHHHCC---EEEEEE-TTCHHH----HHHHHTT-----ECC--EHHHHHHC-SEEEE-S
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCC--CEEEEecCCCcCH----HHHHHCCC----eec--cHHHHHhhCCEEEEeC
Confidence            45699999999999999999999997  8888777665211    12222222    332  1237899999999995

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=94.95  E-value=0.3  Score=44.90  Aligned_cols=88  Identities=15%  Similarity=0.286  Sum_probs=58.5

Q ss_pred             CCeEEEEcCChh--------------------HHHHHHHHHhcCCCCeEEEEeCCccchHH-HHHHHHHHhhcCCCceEE
Q 018760           37 HTKISVIGTGNV--------------------GMAIAQTILTQDFVEELALVDAKADKLRG-EMLDLQHAAAFLPRTKIL   95 (350)
Q Consensus        37 ~~KI~IIGAG~v--------------------G~~~a~~l~~~~~~~ev~L~D~~~~~l~~-~~~dl~~~~~~~~~~~v~   95 (350)
                      +|||+|.|||+-                    |+.+|..+++.|.  +|+|.|.+.+-.+- +...++++     ..++.
T Consensus         1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGH--DVVLaePn~d~~dd~~w~~vedA-----GV~vv   73 (340)
T COG4007           1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGH--DVVLAEPNRDIMDDEHWKRVEDA-----GVEVV   73 (340)
T ss_pred             CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCC--cEEeecCCccccCHHHHHHHHhc-----CcEEe
Confidence            478888888853                    5667888888885  99999998765542 23334443     23444


Q ss_pred             EcCCccccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhc
Q 018760           96 ASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVK  143 (350)
Q Consensus        96 ~t~~~~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~  143 (350)
                       ++|.++.+.+.+.|+...+.           +.+..|.++|.+.+.+
T Consensus        74 -~dD~eaa~~~Ei~VLFTPFG-----------k~T~~Iarei~~hvpE  109 (340)
T COG4007          74 -SDDAEAAEHGEIHVLFTPFG-----------KATFGIAREILEHVPE  109 (340)
T ss_pred             -cCchhhhhcceEEEEecccc-----------hhhHHHHHHHHhhCcC
Confidence             44568899999998874332           1356677777666554

>PRK14852 hypothetical protein; Provisional

Probab=94.89  E-value=0.095  Score=56.79  Aligned_cols=35  Identities=20%  Similarity=0.349  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      +..||+|+|+|.+|+.++..|+..|+ ++|+|+|-|
T Consensus       331 ~~srVlVvGlGGlGs~ia~~LAraGV-G~I~L~D~D  365 (989)
T PRK14852        331 LRSRVAIAGLGGVGGIHLMTLARTGI-GNFNLADFD  365 (989)
T ss_pred             hcCcEEEECCcHHHHHHHHHHHHcCC-CeEEEEcCC
Confidence            35799999999999999999999998 799999965

>PRK06482 short chain dehydrogenase; Provisional

Probab=94.87  E-value=0.21  Score=46.12  Aligned_cols=37  Identities=16%  Similarity=0.286  Sum_probs=32.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      +++.|+|| |.+|+.++..|++.|.  .|+++++++++++
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~~~~   40 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPDALD   40 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHH
Confidence            47999998 9999999999999985  8999999876554

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=94.86  E-value=0.098  Score=47.61  Aligned_cols=54  Identities=15%  Similarity=0.231  Sum_probs=40.3

Q ss_pred             CCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEE-EEeC
Q 018760           12 PGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELA-LVDA   70 (350)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~-L~D~   70 (350)
                      .-|.|...+...-++....   ..+.++|+|.|.|+||+.++..|.+.+.  .|+ +.|.
T Consensus         9 ~Tg~Gv~~~~~~~~~~~~~---~l~~~~v~I~G~G~VG~~~a~~L~~~g~--~vv~v~D~   63 (227)
T cd01076           9 ATGRGVAYATREALKKLGI---GLAGARVAIQGFGNVGSHAARFLHEAGA--KVVAVSDS   63 (227)
T ss_pred             cchHHHHHHHHHHHHhcCC---CccCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEECC
Confidence            4466766666666665542   3456899999999999999999999885  555 6676

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.86  E-value=0.062  Score=50.50  Aligned_cols=55  Identities=16%  Similarity=0.375  Sum_probs=43.5

Q ss_pred             CCCCeEEEEcCCh-hHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           35 KRHTKISVIGTGN-VGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        35 ~~~~KI~IIGAG~-vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      -+..+|+|||+|. ||.+++..|...+.  .|+.++...                         .+. +.+++||+||.+
T Consensus       156 l~Gk~vvVIGrs~~VG~pla~lL~~~ga--tVtv~~s~t-------------------------~~l~~~~~~ADIVIsA  208 (286)
T PRK14175        156 LEGKNAVVIGRSHIVGQPVSKLLLQKNA--SVTILHSRS-------------------------KDMASYLKDADVIVSA  208 (286)
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCC--eEEEEeCCc-------------------------hhHHHHHhhCCEEEEC
Confidence            4457999999977 99999999998884  788887532                         133 457899999999


Q ss_pred             cCCC
Q 018760          113 AGAR  116 (350)
Q Consensus       113 ~g~~  116 (350)
                      +|.|
T Consensus       209 vg~p  212 (286)
T PRK14175        209 VGKP  212 (286)
T ss_pred             CCCC
Confidence            9866

>PRK06487 glycerate dehydrogenase; Provisional

Probab=94.81  E-value=0.13  Score=49.19  Aligned_cols=110  Identities=14%  Similarity=0.169  Sum_probs=66.2

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      ....+|+|||.|++|+.+|..+..-|.  +|..+|+.... .        ..      .   ..+. +.++.||+|+++.
T Consensus       146 l~gktvgIiG~G~IG~~vA~~l~~fgm--~V~~~~~~~~~-~--------~~------~---~~~l~ell~~sDiv~l~l  205 (317)
T PRK06487        146 LEGKTLGLLGHGELGGAVARLAEAFGM--RVLIGQLPGRP-A--------RP------D---RLPLDELLPQVDALTLHC  205 (317)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHhhCCC--EEEEECCCCCc-c--------cc------c---ccCHHHHHHhCCEEEECC
Confidence            455799999999999999988876665  89999975320 0        00      0   1145 5689999999986


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeec
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSG  179 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g  179 (350)
                      ....   +++ .++  |.       +.+....|++++||++--.=+-...+.+.  +...++-|.+
T Consensus       206 Plt~---~T~-~li--~~-------~~~~~mk~ga~lIN~aRG~vVde~AL~~A--L~~g~i~gAa  256 (317)
T PRK06487        206 PLTE---HTR-HLI--GA-------RELALMKPGALLINTARGGLVDEQALADA--LRSGHLGGAA  256 (317)
T ss_pred             CCCh---HHh-cCc--CH-------HHHhcCCCCeEEEECCCccccCHHHHHHH--HHcCCeeEEE
Confidence            4221   111 111  22       22333468999999985432333333333  2345776553

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=94.78  E-value=0.1  Score=50.93  Aligned_cols=71  Identities=18%  Similarity=0.310  Sum_probs=43.1

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcC-C-CCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEec
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQD-F-VEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTA  113 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~-~-~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~  113 (350)
                      |++|+|+|| |.+|..+...++... + ..++.++....  ..+....+..     ....+....+.++++++|+|+.++
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~--sg~~~~~f~g-----~~~~v~~~~~~~~~~~~Divf~a~   73 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQ--AGGAAPSFGG-----KEGTLQDAFDIDALKKLDIIITCQ   73 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchh--hCCcccccCC-----CcceEEecCChhHhcCCCEEEECC
Confidence            369999999 999999998566554 4 35688865532  2111111111     112233222345678999999987


Q ss_pred             C
Q 018760          114 G  114 (350)
Q Consensus       114 g  114 (350)
                      +
T Consensus        74 ~   74 (369)
T PRK06598         74 G   74 (369)
T ss_pred             C
Confidence            5

>PRK08589 short chain dehydrogenase; Validated

Probab=94.78  E-value=0.34  Score=44.80  Aligned_cols=111  Identities=14%  Similarity=0.195  Sum_probs=64.3

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc-----------c
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA-----------V  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~-----------a  102 (350)
                      .+++.|+|+ |.+|..++..|++.|.  +|++++++ ++++....++.+..   ........  ++.+           .
T Consensus         6 ~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~-~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~   79 (272)
T PRK08589          6 NKVAVITGASTGIGQASAIALAQEGA--YVLAVDIA-EAVSETVDKIKSNG---GKAKAYHVDISDEQQVKDFASEIKEQ   79 (272)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCc-HHHHHHHHHHHhcC---CeEEEEEeecCCHHHHHHHHHHHHHH
Confidence            357889999 8999999999999985  89999998 66665555554321   11111111  1111           1


Q ss_pred             cCCCCEEEEecCCCcCcc----ccHH---HHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 TAGSDLCIVTAGARQIAG----ESRL---NLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~~g----~~r~---~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +...|++|.++|.....+    .+..   ..+..|    ..+.+.+.+.+.+.  .+.+|+++.
T Consensus        80 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS  141 (272)
T PRK08589         80 FGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSS  141 (272)
T ss_pred             cCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCc
Confidence            235799999988642211    1111   112223    34455566666543  256766654

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=94.77  E-value=0.16  Score=48.75  Aligned_cols=115  Identities=17%  Similarity=0.285  Sum_probs=66.8

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHH-hcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           35 KRHTKISVIGTGNVGMAIAQTIL-TQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~-~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      -..++|+|||.|++|..++..+. .-|.  +|..+|..... +     ....  +  ..+  .. +. +.++.||+|++.
T Consensus       143 L~gktvGIiG~G~IG~~va~~l~~~fgm--~V~~~~~~~~~-~-----~~~~--~--~~~--~~-~l~ell~~sDvv~lh  207 (323)
T PRK15409        143 VHHKTLGIVGMGRIGMALAQRAHFGFNM--PILYNARRHHK-E-----AEER--F--NAR--YC-DLDTLLQESDFVCII  207 (323)
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHhcCCC--EEEEECCCCch-h-----hHHh--c--CcE--ec-CHHHHHHhCCEEEEe
Confidence            45679999999999999998876 4454  88888875421 1     0011  1  112  12 55 568999999998


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeec
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSG  179 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g  179 (350)
                      ....  + +++ .++  |.       +.+....|++++||++--.=+-...+.+.  +...++-|.|
T Consensus       208 ~plt--~-~T~-~li--~~-------~~l~~mk~ga~lIN~aRG~vVde~AL~~A--L~~g~i~gAa  259 (323)
T PRK15409        208 LPLT--D-ETH-HLF--GA-------EQFAKMKSSAIFINAGRGPVVDENALIAA--LQKGEIHAAG  259 (323)
T ss_pred             CCCC--h-HHh-hcc--CH-------HHHhcCCCCeEEEECCCccccCHHHHHHH--HHcCCeeEEE
Confidence            6422  1 111 111  22       23334468999999985433333444333  2334665553

>PRK06932 glycerate dehydrogenase; Provisional

Probab=94.75  E-value=0.13  Score=49.25  Aligned_cols=110  Identities=15%  Similarity=0.248  Sum_probs=65.2

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      ...++|+|||.|.+|+.+|..+..-|.  +|+.+|....  .    +.   .     ..   ..+. +.++.||+|+++.
T Consensus       145 l~gktvgIiG~G~IG~~va~~l~~fg~--~V~~~~~~~~--~----~~---~-----~~---~~~l~ell~~sDiv~l~~  205 (314)
T PRK06932        145 VRGSTLGVFGKGCLGTEVGRLAQALGM--KVLYAEHKGA--S----VC---R-----EG---YTPFEEVLKQADIVTLHC  205 (314)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHhcCCC--EEEEECCCcc--c----cc---c-----cc---cCCHHHHHHhCCEEEEcC
Confidence            455799999999999999988876665  8888886431  0    00   0     01   1245 5689999999986


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                      ....   +++ .++  |.       +.+.+..|++++||++--.=+-...+.+.  +...++-|.
T Consensus       206 Plt~---~T~-~li--~~-------~~l~~mk~ga~lIN~aRG~~Vde~AL~~a--L~~g~i~gA  255 (314)
T PRK06932        206 PLTE---TTQ-NLI--NA-------ETLALMKPTAFLINTGRGPLVDEQALLDA--LENGKIAGA  255 (314)
T ss_pred             CCCh---HHh-ccc--CH-------HHHHhCCCCeEEEECCCccccCHHHHHHH--HHcCCccEE
Confidence            4221   111 111  22       22333468999999985433333333333  233466555

>PRK06153 hypothetical protein; Provisional

Probab=94.73  E-value=0.037  Score=53.97  Aligned_cols=35  Identities=26%  Similarity=0.459  Sum_probs=31.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      ..||+|||+|.+|+.++..|+..|+ .+|+|+|-|.
T Consensus       176 ~~~VaIVG~GG~GS~Va~~LAR~GV-geI~LVD~D~  210 (393)
T PRK06153        176 GQRIAIIGLGGTGSYILDLVAKTPV-REIHLFDGDD  210 (393)
T ss_pred             hCcEEEEcCCccHHHHHHHHHHcCC-CEEEEECCCE
Confidence            4699999999999999999999997 6999999863

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=94.73  E-value=0.47  Score=45.55  Aligned_cols=93  Identities=19%  Similarity=0.265  Sum_probs=57.1

Q ss_pred             hccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHH----------H---HHHHhhc
Q 018760           22 FKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEML----------D---LQHAAAF   88 (350)
Q Consensus        22 ~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~----------d---l~~~~~~   88 (350)
                      .+.+..|+.   .-++.||.+||||.||+.++..+..-.-..=+.+-|++.+.++....          +   .......
T Consensus         5 ~r~L~aRaa---~G~PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~A   81 (438)
T COG4091           5 ARDLAARAA---EGKPIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADA   81 (438)
T ss_pred             HHHHHHHhc---cCCceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHH
Confidence            333445655   67889999999999999998877754323445667777665542211          0   1111101


Q ss_pred             CCCceEEEcCCccc---cCCCCEEEEecCCCc
Q 018760           89 LPRTKILASVDYAV---TAGSDLCIVTAGARQ  117 (350)
Q Consensus        89 ~~~~~v~~t~~~~a---l~~aDiVIi~~g~~~  117 (350)
                      ....++..|.|.+.   ....|+||-+.|.|.
T Consensus        82 i~aGKi~vT~D~~~i~~~~~IdvIIdATG~p~  113 (438)
T COG4091          82 IEAGKIAVTDDAELIIANDLIDVIIDATGVPE  113 (438)
T ss_pred             HhcCcEEEecchhhhhcCCcceEEEEcCCCcc
Confidence            12456777777543   345688888888774

>PRK12937 short chain dehydrogenase; Provisional

Probab=94.72  E-value=0.65  Score=41.68  Aligned_cols=37  Identities=27%  Similarity=0.355  Sum_probs=30.4

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      +.+..+|.|+|+ |.+|+.++..|++.|.  +++++..+.
T Consensus         2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~   39 (245)
T PRK12937          2 TLSNKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGS   39 (245)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCC
Confidence            345568999998 9999999999999986  787777644

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.71  E-value=0.28  Score=38.73  Aligned_cols=64  Identities=14%  Similarity=0.294  Sum_probs=44.8

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      .+..+|.|||+|.+|..-+..|+..|.  +|+++....   +    ..+.      ..+.. ...+ +++.++|+|+.+.
T Consensus         5 l~~~~vlVvGgG~va~~k~~~Ll~~gA--~v~vis~~~---~----~~~~------~i~~~-~~~~~~~l~~~~lV~~at   68 (103)
T PF13241_consen    5 LKGKRVLVVGGGPVAARKARLLLEAGA--KVTVISPEI---E----FSEG------LIQLI-RREFEEDLDGADLVFAAT   68 (103)
T ss_dssp             -TT-EEEEEEESHHHHHHHHHHCCCTB--EEEEEESSE---H----HHHT------SCEEE-ESS-GGGCTTESEEEE-S
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEECCch---h----hhhh------HHHHH-hhhHHHHHhhheEEEecC
Confidence            345799999999999999999999994  999999876   1    1111      22333 2234 5799999999885


Q ss_pred             C
Q 018760          114 G  114 (350)
Q Consensus       114 g  114 (350)
                      +
T Consensus        69 ~   69 (103)
T PF13241_consen   69 D   69 (103)
T ss_dssp             S
T ss_pred             C
Confidence            4

>PRK08328 hypothetical protein; Provisional

Probab=94.71  E-value=0.047  Score=49.80  Aligned_cols=36  Identities=22%  Similarity=0.505  Sum_probs=32.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      ..||+|+|+|.+|+.++..|+..|+ ++++|+|.|.-
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gv-g~i~lvD~D~v   62 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGV-GRILLIDEQTP   62 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCcc
Confidence            4689999999999999999999997 69999998763

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=94.70  E-value=0.25  Score=42.27  Aligned_cols=74  Identities=16%  Similarity=0.205  Sum_probs=48.1

Q ss_pred             CCeEEEEc-C-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHH---HHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEE
Q 018760           37 HTKISVIG-T-GNVGMAIAQTILTQDFVEELALVDAKADKLRG---EMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCI  110 (350)
Q Consensus        37 ~~KI~IIG-A-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~---~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVI  110 (350)
                      ..||++|| . ++|..+++..+..-|.  ++.++-...-...-   .....+..... ...++..+.+. +++++||+|+
T Consensus         2 gl~i~~vGD~~~rv~~Sl~~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~~~~~~-~g~~i~~~~~~~e~l~~aDvvy   78 (158)
T PF00185_consen    2 GLKIAYVGDGHNRVAHSLIELLAKFGM--EVVLIAPEGLRYPPDPEVLEKAKKNAKK-NGGKITITDDIEEALKGADVVY   78 (158)
T ss_dssp             TEEEEEESSTTSHHHHHHHHHHHHTTS--EEEEESSGGGGGSHHHHHHHHHHHHHHH-HTTEEEEESSHHHHHTT-SEEE
T ss_pred             CCEEEEECCCCChHHHHHHHHHHHcCC--EEEEECCCcccCCCCHHHHHHHHHHHHH-hCCCeEEEeCHHHhcCCCCEEE
Confidence            46999999 5 8999999999988886  78888775522111   11111111100 13466667777 7899999998


Q ss_pred             Eec
Q 018760          111 VTA  113 (350)
Q Consensus       111 i~~  113 (350)
                      ...
T Consensus        79 ~~~   81 (158)
T PF00185_consen   79 TDR   81 (158)
T ss_dssp             EES
T ss_pred             EcC
Confidence            874

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=94.70  E-value=0.56  Score=44.17  Aligned_cols=69  Identities=17%  Similarity=0.272  Sum_probs=43.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-c--CCCCEEEEecC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-T--AGSDLCIVTAG  114 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l--~~aDiVIi~~g  114 (350)
                      +||+|||+|.+|...+..++...-+.=+.++|+++++.. .  ......    ..... .++++. +  .+.|+|+++.+
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~-l--a~A~~~----Gi~~~-~~~~e~ll~~~dIDaV~iaTp   73 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDG-L--ARAREL----GVKTS-AEGVDGLLANPDIDIVFDATS   73 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHH-H--HHHHHC----CCCEE-ECCHHHHhcCCCCCEEEECCC
Confidence            699999999999988877776543444567899887532 1  122221    12222 234443 3  46899999864

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=94.68  E-value=0.2  Score=47.14  Aligned_cols=103  Identities=16%  Similarity=0.184  Sum_probs=60.2

Q ss_pred             EEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH--H-HHHHHHHHhhcCCCceEEEcCC-cc------ccCCCCE
Q 018760           40 ISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR--G-EMLDLQHAAAFLPRTKILASVD-YA------VTAGSDL  108 (350)
Q Consensus        40 I~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~--~-~~~dl~~~~~~~~~~~v~~t~~-~~------al~~aDi  108 (350)
                      |.|+|| |.+|++++..|+..|. ..+.++|.......  . ...++.+..      .   ..+ .+      .+.++|+
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~d~~------~---~~~~~~~~~~~~~~~~~d~   71 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLDIADYM------D---KEDFLAQIMAGDDFGDIEA   71 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhhhhhhhh------h---HHHHHHHHhcccccCCccE
Confidence            689998 9999999999999884 35777787543111  0 001111110      0   001 11      1237899


Q ss_pred             EEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          109 CIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       109 VIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ||-+++.+.............|+.....+.+.+.+.+-  .+|..|
T Consensus        72 Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~S  115 (308)
T PRK11150         72 IFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS  115 (308)
T ss_pred             EEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEc
Confidence            99998643322223344566788777788888777643  244444

>PRK08703 short chain dehydrogenase; Provisional

Probab=94.64  E-value=0.61  Score=41.90  Aligned_cols=45  Identities=20%  Similarity=0.237  Sum_probs=37.1

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      .++|.|+|+ |.+|..++..|++.|.  +|+++++++++++....++.
T Consensus         6 ~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~   51 (239)
T PRK08703          6 DKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQKKLEKVYDAIV   51 (239)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCChHHHHHHHHHHH
Confidence            358999998 9999999999999885  89999999887765544443

>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase

Probab=94.63  E-value=0.16  Score=47.35  Aligned_cols=93  Identities=15%  Similarity=0.159  Sum_probs=56.4

Q ss_pred             hHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHH-Hhhc---CCCc---eEEEcCCccccCCCCEEEEecCCCcCcc
Q 018760           48 VGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH-AAAF---LPRT---KILASVDYAVTAGSDLCIVTAGARQIAG  120 (350)
Q Consensus        48 vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~-~~~~---~~~~---~v~~t~~~~al~~aDiVIi~~g~~~~~g  120 (350)
                      ||..++..|...|.  +|.+++++ ++++.    +.. ....   ....   .+..+++.+.+.++|+||++....    
T Consensus         2 iG~~~a~~L~~~G~--~V~l~~r~-~~~~~----i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs~----   70 (293)
T TIGR00745         2 VGSLYGAYLARAGH--DVTLLARG-EQLEA----LNQEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVKAY----   70 (293)
T ss_pred             chHHHHHHHHhCCC--cEEEEecH-HHHHH----HHHCCcEEEecCCcEEEcccccccChhhcCCCCEEEEeccch----
Confidence            68899999999884  99999996 44442    221 1100   0111   223344555578999999996321    


Q ss_pred             ccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHHHH
Q 018760          121 ESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILTYV  163 (350)
Q Consensus       121 ~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~~~  163 (350)
                                  -..++++.+..+ .++..||.+.|.++....+
T Consensus        71 ------------~~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l  102 (293)
T TIGR00745        71 ------------QTEEAAALLLPLIGKNTKVLFLQNGLGHEERL  102 (293)
T ss_pred             ------------hHHHHHHHhHhhcCCCCEEEEccCCCCCHHHH
Confidence                        112233334433 5778888899998875433

This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.63  E-value=0.24  Score=50.05  Aligned_cols=93  Identities=15%  Similarity=0.079  Sum_probs=57.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~  116 (350)
                      ..||+|+|+|.-|.+.+..|...|.  ++++.|.++........+|...     ...+....+.+.+.++|+||...|.|
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~~g~--~v~~~d~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~d~vV~SpgI~   80 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRAHLP--AQALTLFCNAVEAREVGALADA-----ALLVETEASAQRLAAFDVVVKSPGIS   80 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHHcCC--EEEEEcCCCcccchHHHHHhhc-----CEEEeCCCChHHccCCCEEEECCCCC
Confidence            3589999999999999999999996  8999997653221111234321     11222111234578899999998887


Q ss_pred             cCccccHHHHHHhhHHHHHHH
Q 018760          117 QIAGESRLNLLQRNLSLFKAI  137 (350)
Q Consensus       117 ~~~g~~r~~~~~~n~~i~~~i  137 (350)
                      ...- .......++++++.++
T Consensus        81 ~~~p-~~~~a~~~~i~i~~~~  100 (468)
T PRK04690         81 PYRP-EALAAAARGTPFIGGT  100 (468)
T ss_pred             CCCH-HHHHHHHcCCcEEEHH
Confidence            4321 1122234556666443

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.60  E-value=0.35  Score=48.29  Aligned_cols=74  Identities=18%  Similarity=0.233  Sum_probs=49.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccCCCCEEEEecCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTAGSDLCIVTAGA  115 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~~aDiVIi~~g~  115 (350)
                      .++|.|+|+|..|.+.+..|...|.  +|.++|.++..-  ....++...   ...++......+ .+.++|+||.+.|.
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~~g~--~v~~~d~~~~~~--~~~~l~~~~---~gi~~~~g~~~~~~~~~~d~vv~spgi   77 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRKNGA--EVAAYDAELKPE--RVAQIGKMF---DGLVFYTGRLKDALDNGFDILALSPGI   77 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCCCch--hHHHHhhcc---CCcEEEeCCCCHHHHhCCCEEEECCCC
Confidence            4689999999999999999999995  899999866421  111233211   123343222222 35789999999888


Q ss_pred             Cc
Q 018760          116 RQ  117 (350)
Q Consensus       116 ~~  117 (350)
                      |.
T Consensus        78 ~~   79 (445)
T PRK04308         78 SE   79 (445)
T ss_pred             CC
Confidence            74

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=94.59  E-value=0.56  Score=42.99  Aligned_cols=45  Identities=13%  Similarity=0.208  Sum_probs=36.6

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      .+++.|+|+ |.+|..++..|+..|.  +|++.++++++++....++.
T Consensus        10 ~k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~   55 (265)
T PRK07097         10 GKIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYR   55 (265)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHH
Confidence            357899998 8999999999999885  89999998887765544454

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=94.59  E-value=0.067  Score=52.51  Aligned_cols=74  Identities=15%  Similarity=0.201  Sum_probs=46.0

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC---CCceEEEcCCccccCCCCEEE
Q 018760           35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL---PRTKILASVDYAVTAGSDLCI  110 (350)
Q Consensus        35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~---~~~~v~~t~~~~al~~aDiVI  110 (350)
                      .+++||+|+|| |.+|..+...|..++. .+|.++..+...-+.    +.+.....   ...++. ..+.++++++|+|+
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~-~el~~l~s~~saG~~----i~~~~~~l~~~~~~~~~-~~~~~~~~~~DvVf  109 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPD-FEITVMTADRKAGQS----FGSVFPHLITQDLPNLV-AVKDADFSDVDAVF  109 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCC-CeEEEEEChhhcCCC----chhhCccccCcccccee-cCCHHHhcCCCEEE
Confidence            45679999999 9999999998888853 488888775432211    12111100   011122 11234478999999


Q ss_pred             EecC
Q 018760          111 VTAG  114 (350)
Q Consensus       111 i~~g  114 (350)
                      ++.+
T Consensus       110 ~Alp  113 (381)
T PLN02968        110 CCLP  113 (381)
T ss_pred             EcCC
Confidence            9864

>PRK07074 short chain dehydrogenase; Provisional

Probab=94.59  E-value=0.089  Score=47.93  Aligned_cols=43  Identities=26%  Similarity=0.306  Sum_probs=34.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHH
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL   82 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl   82 (350)
                      .++.|+|+ |.+|..++..|++.|.  +|+++++++++++....++
T Consensus         3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~~~~~~~~~~~   46 (257)
T PRK07074          3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDAAALAAFADAL   46 (257)
T ss_pred             CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh
Confidence            37899999 8999999999999885  8999999887665443333

>PRK06101 short chain dehydrogenase; Provisional

Probab=94.57  E-value=0.12  Score=46.88  Aligned_cols=38  Identities=16%  Similarity=0.293  Sum_probs=32.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHH
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRG   77 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~   77 (350)
                      .++.|+|| |.+|..++..|+..|.  +|+++|+++++++.
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~~~~   40 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSVLDE   40 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHHHHH
Confidence            46889998 9999999999999885  89999999876653

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=94.57  E-value=0.054  Score=52.79  Aligned_cols=39  Identities=36%  Similarity=0.481  Sum_probs=33.8

Q ss_pred             CCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           32 SPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        32 ~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      .|+.+..+|+|||||.+|.++|..|.+.|+  +|+|+|.++
T Consensus         2 ~~~~~~~dViIVGaG~~Gl~~A~~L~~~G~--~v~liE~~~   40 (388)
T PRK07494          2 LMEKEHTDIAVIGGGPAGLAAAIALARAGA--SVALVAPEP   40 (388)
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHhcCCC--eEEEEeCCC
Confidence            355566789999999999999999999886  899999865

>PRK07576 short chain dehydrogenase; Provisional

Probab=94.53  E-value=0.93  Score=41.60  Aligned_cols=45  Identities=20%  Similarity=0.378  Sum_probs=36.2

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      ..+|.|+|| |.+|..++..|+..|.  +|+++|++++.++....++.
T Consensus         9 ~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~   54 (264)
T PRK07576          9 GKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQ   54 (264)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence            458999999 9999999999999885  89999998876654444443

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.52  E-value=0.09  Score=39.25  Aligned_cols=35  Identities=26%  Similarity=0.517  Sum_probs=31.2

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccch
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKL   75 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l   75 (350)
                      ||+|||+|.+|.-+|..|...+.  +++|++..+.-+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~--~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK--EVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS--EEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc--EEEEEeccchhh
Confidence            78999999999999999999884  999999977544

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK06179 short chain dehydrogenase; Provisional

Probab=94.50  E-value=0.099  Score=48.06  Aligned_cols=37  Identities=14%  Similarity=0.220  Sum_probs=31.9

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccch
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKL   75 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l   75 (350)
                      ..+|.|+|+ |.+|..++..|+..|.  +|++.+++++++
T Consensus         4 ~~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~   41 (270)
T PRK06179          4 SKVALVTGASSGIGRATAEKLARAGY--RVFGTSRNPARA   41 (270)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCChhhc
Confidence            357999998 9999999999999985  899999987654

>PTZ00245 ubiquitin activating enzyme; Provisional

Probab=94.49  E-value=0.26  Score=45.47  Aligned_cols=73  Identities=15%  Similarity=0.279  Sum_probs=50.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc------------------chHHHHHHHHHHhhcCCCceEEEcC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD------------------KLRGEMLDLQHAAAFLPRTKILASV   98 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~------------------~l~~~~~dl~~~~~~~~~~~v~~t~   98 (350)
                      ..+|.|+|+|.+|+.++..|+..|+ ++|.|+|-+.-                  |++.....++.   ..+..+|....
T Consensus        26 ~SrVLVVG~GGLGsEVAKnLaLAGV-GsItIvDdD~Ve~SNL~RQfl~~~dvGk~KAeaAa~~L~e---LNP~V~V~~i~  101 (287)
T PTZ00245         26 HTSVALHGVAGAAAEAAKNLVLAGV-RAVAVADEGLVTDADVCTNYLMQGEAGGTRGARALGALQR---LNPHVSVYDAV  101 (287)
T ss_pred             hCeEEEECCCchHHHHHHHHHHcCC-CeEEEecCCccchhhhccccccccccCCcHHHHHHHHHHH---HCCCcEEEEcc
Confidence            4689999999999999999999997 68999997541                  22222222222   23566776543


Q ss_pred             C-ccccCCCCEEEEec
Q 018760           99 D-YAVTAGSDLCIVTA  113 (350)
Q Consensus        99 ~-~~al~~aDiVIi~~  113 (350)
                      . .+...+.++||++.
T Consensus       102 ~rld~~n~fqvvV~~~  117 (287)
T PTZ00245        102 TKLDGSSGTRVTMAAV  117 (287)
T ss_pred             cccCCcCCceEEEEEc
Confidence            3 25567888999885

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=94.49  E-value=0.38  Score=45.08  Aligned_cols=109  Identities=16%  Similarity=0.211  Sum_probs=62.6

Q ss_pred             eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc--CCCCEE
Q 018760           39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT--AGSDLC  109 (350)
Q Consensus        39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al--~~aDiV  109 (350)
                      ||.|+|| |.+|..++..|++.+.  +|+++|............+...    ........  ++.+    .+  .+.|+|
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~d~v   74 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERI----TRVTFVEGDLRDRELLDRLFEEHKIDAV   74 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhccc----cceEEEECCCCCHHHHHHHHHhCCCcEE
Confidence            6899998 9999999999999885  7888886432211111111110    01122111  1111    22  268999


Q ss_pred             EEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          110 IVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       110 Ii~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |.+++....+  .....+.+..|+.....+++.+.+.+... ++++|
T Consensus        75 v~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~s  120 (328)
T TIGR01179        75 IHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKK-FIFSS  120 (328)
T ss_pred             EECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCE-EEEec
Confidence            9998754221  11233445667777778888777765443 33443

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK08219 short chain dehydrogenase; Provisional

Probab=94.48  E-value=0.17  Score=44.97  Aligned_cols=37  Identities=24%  Similarity=0.376  Sum_probs=31.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      +++|.|+|+ |.+|..++..|+++ .  +|++++++.+.++
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~~~   40 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAERLD   40 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHHHH
Confidence            358999998 99999999999887 3  8999999876543

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=94.44  E-value=0.11  Score=50.63  Aligned_cols=69  Identities=17%  Similarity=0.269  Sum_probs=45.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHH-hcCC-CCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEEEEec
Q 018760           38 TKISVIGT-GNVGMAIAQTIL-TQDF-VEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLCIVTA  113 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~-~~~~-~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiVIi~~  113 (350)
                      +||+|+|| |.||+.+...|. +.++ ..+++++.....  .+...      .+. ....+...++.+++++.|+|+.++
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s--~g~~~------~f~~~~~~v~~~~~~~~~~~vDivffa~   72 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQL--GQAAP------SFGGTTGTLQDAFDIDALKALDIIITCQ   72 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhh--CCCcC------CCCCCcceEEcCcccccccCCCEEEEcC
Confidence            48999999 999999999888 5554 367888876431  12111      111 123444333335789999999997


Q ss_pred             C
Q 018760          114 G  114 (350)
Q Consensus       114 g  114 (350)
                      |
T Consensus        73 g   73 (366)
T TIGR01745        73 G   73 (366)
T ss_pred             C
Confidence            5

>PRK06500 short chain dehydrogenase; Provisional

Probab=94.43  E-value=0.77  Score=41.30  Aligned_cols=38  Identities=16%  Similarity=0.330  Sum_probs=32.9

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      .++|.|+|| |.+|..++..|+..|.  +|+++++++++++
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~   44 (249)
T PRK06500          6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLE   44 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHH
Confidence            358999999 9999999999999985  8999999876554

>PRK08263 short chain dehydrogenase; Provisional

Probab=94.40  E-value=0.39  Score=44.36  Aligned_cols=37  Identities=14%  Similarity=0.147  Sum_probs=32.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      ++|.|+|| |.+|..++..|++.+.  +|++.+++++.++
T Consensus         4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~~   41 (275)
T PRK08263          4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDTATLA   41 (275)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHHH
Confidence            47899998 9999999999999884  8999999877654

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=94.39  E-value=0.32  Score=43.41  Aligned_cols=114  Identities=15%  Similarity=0.225  Sum_probs=71.6

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC---------ccccCCC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD---------YAVTAGS  106 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~---------~~al~~a  106 (350)
                      ...|.|.|+ ..+|..+|..|.+.|-  +|++..+++++++............  -+++- ..+         .....+-
T Consensus         5 gnTiLITGG~sGIGl~lak~f~elgN--~VIi~gR~e~~L~e~~~~~p~~~t~--v~Dv~-d~~~~~~lvewLkk~~P~l   79 (245)
T COG3967           5 GNTILITGGASGIGLALAKRFLELGN--TVIICGRNEERLAEAKAENPEIHTE--VCDVA-DRDSRRELVEWLKKEYPNL   79 (245)
T ss_pred             CcEEEEeCCcchhhHHHHHHHHHhCC--EEEEecCcHHHHHHHHhcCcchhee--eeccc-chhhHHHHHHHHHhhCCch
Confidence            357999987 6899999999999884  9999999999887543332222210  01111 111         1234677


Q ss_pred             CEEEEecCCCcCcccc-----HH---HH----HHhhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          107 DLCIVTAGARQIAGES-----RL---NL----LQRNLSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       107 DiVIi~~g~~~~~g~~-----r~---~~----~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      +++|..+|..+..+-+     ..   +.    +...+.+...+.+.+.+ .|+|.||++|--
T Consensus        80 NvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~-q~~a~IInVSSG  140 (245)
T COG3967          80 NVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLR-QPEATIINVSSG  140 (245)
T ss_pred             heeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHh-CCCceEEEeccc
Confidence            9999999976543321     11   11    22235556666666665 579999999743

>PRK05865 hypothetical protein; Provisional

Probab=94.37  E-value=0.18  Score=54.48  Aligned_cols=103  Identities=16%  Similarity=0.220  Sum_probs=63.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecCC
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAGA  115 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g~  115 (350)
                      |||.|+|| |.+|+.++..|+..|.  +|+++|++....      +.....+ ...++.-..+. ++++++|+||.+++.
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~------~~~~v~~-v~gDL~D~~~l~~al~~vD~VVHlAa~   71 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS------WPSSADF-IAADIRDATAVESAMTGADVVAHCAWV   71 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh------cccCceE-EEeeCCCHHHHHHHHhCCCEEEECCCc
Confidence            68999998 9999999999999885  899999864311      0000000 00111100112 347889999999864


Q ss_pred             CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc
Q 018760          116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV  157 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~  157 (350)
                      .. +      ....|+.-...+.+.+.+.+.. .+|++|.+.
T Consensus        72 ~~-~------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~  105 (854)
T PRK05865         72 RG-R------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH  105 (854)
T ss_pred             cc-c------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH
Confidence            32 1      2344666666777777765433 466666654

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=94.36  E-value=0.3  Score=48.83  Aligned_cols=125  Identities=18%  Similarity=0.179  Sum_probs=72.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC-ccccCCCCEEEEecCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD-YAVTAGSDLCIVTAGA  115 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~-~~al~~aDiVIi~~g~  115 (350)
                      .+||+|+|.|.-|.+++..|...|.  +|..+|.++.- ...... . .  ......+..... .+...++|+||...|.
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~--~v~v~D~~~~~-~~~~~~-~-~--~~~~i~~~~g~~~~~~~~~~d~vV~SPGi   79 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGA--EVTVSDDRPAP-EGLAAQ-P-L--LLEGIEVELGSHDDEDLAEFDLVVKSPGI   79 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCC--eEEEEcCCCCc-cchhhh-h-h--hccCceeecCccchhccccCCEEEECCCC
Confidence            6799999999999999999999995  99999987754 211111 1 0  111233332222 2578999999999887


Q ss_pred             CcCccccHHHHHHhhHHHHHHHHhhhhcc--CCCeEEEEEcCCcchHHHHH---HHHhCC
Q 018760          116 RQIAGESRLNLLQRNLSLFKAIIPPLVKY--SPDCILLIVANPVDILTYVA---WKLSGL  170 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~--~p~a~viv~tNP~~~~~~~~---~~~sg~  170 (350)
                      |...-. -.......++++-++--..+..  +| -+-|.=||-=...|.++   .+.+|+
T Consensus        80 ~~~~p~-v~~A~~~gi~i~~dieL~~r~~~~~p-~vaITGTNGKTTTTsli~~~l~~~G~  137 (448)
T COG0771          80 PPTHPL-VEAAKAAGIEIIGDIELFYRLSGEAP-IVAITGTNGKTTTTSLIAHLLKAAGL  137 (448)
T ss_pred             CCCCHH-HHHHHHcCCcEEeHHHHHHHhcCCCC-EEEEECCCchHHHHHHHHHHHHhcCC
Confidence            753211 1111233455555544333432  33 22222356544444443   445565

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=94.35  E-value=0.065  Score=52.73  Aligned_cols=34  Identities=21%  Similarity=0.482  Sum_probs=30.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      |+|+|||||-+|.++|+.|++.+.  +|+|+|.+..
T Consensus         1 ~~v~IVG~Gi~Gls~A~~l~~~g~--~V~vle~~~~   34 (416)
T PRK00711          1 MRVVVLGSGVIGVTSAWYLAQAGH--EVTVIDRQPG   34 (416)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCC--EEEEEeCCCc
Confidence            589999999999999999999885  8999999753

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=94.30  E-value=0.59  Score=42.54  Aligned_cols=48  Identities=21%  Similarity=0.237  Sum_probs=38.5

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHH
Q 018760           35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH   84 (350)
Q Consensus        35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~   84 (350)
                      .+.++|.|+|+ |.+|..++..|+..|.  +++++++++++++....++.+
T Consensus         9 l~~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~   57 (255)
T PRK06113          9 LDGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQ   57 (255)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHh
Confidence            34578999999 8999999999999985  899999988777655555543

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=94.29  E-value=0.84  Score=41.18  Aligned_cols=74  Identities=18%  Similarity=0.199  Sum_probs=48.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc-----------cc
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA-----------VT  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~-----------al  103 (350)
                      ++|.|+|+ |.+|+.++..|+..|.  +|+++++++++.+....++....   ....+...  ++.+           .+
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~   76 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGEAGAEAAAKVATDAG---GSVIYLVADVTKEDEIADMIAAAAAEF   76 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CceEEEECCCCCHHHHHHHHHHHHHhc
Confidence            47899998 9999999999999885  89999998876654333333211   11222111  1111           24


Q ss_pred             CCCCEEEEecCCC
Q 018760          104 AGSDLCIVTAGAR  116 (350)
Q Consensus       104 ~~aDiVIi~~g~~  116 (350)
                      ...|+||.+++..
T Consensus        77 ~~~d~vi~~a~~~   89 (255)
T TIGR01963        77 GGLDILVNNAGIQ   89 (255)
T ss_pred             CCCCEEEECCCCC
Confidence            5689999988753

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=94.29  E-value=0.35  Score=48.05  Aligned_cols=91  Identities=19%  Similarity=0.271  Sum_probs=55.6

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccc-hHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCCc
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADK-LRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQ  117 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~-l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~~  117 (350)
                      ||.|||.|..|.++|..|...|.  +|...|..+.. .......++...    ..++....+.+.+.++|+||...+.|.
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~--~V~~sD~~~~~~~~~~~~~~~~~~----gi~~~~g~~~~~~~~~d~vv~sp~i~~   74 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGA--EVTVTDLKPNEELEPSMGQLRLNE----GSVLHTGLHLEDLNNADLVVKSPGIPP   74 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCC--EEEEEeCCCCccchhHHHHHhhcc----CcEEEecCchHHhccCCEEEECCCCCC
Confidence            68999999999999999999996  89999986542 111001121111    234433333456889999999988864


Q ss_pred             CccccHHHHHHhhHHHHHH
Q 018760          118 IAGESRLNLLQRNLSLFKA  136 (350)
Q Consensus       118 ~~g~~r~~~~~~n~~i~~~  136 (350)
                      ..- .......++++++.+
T Consensus        75 ~~p-~~~~a~~~~i~i~~~   92 (433)
T TIGR01087        75 DHP-LVQAAAKRGIPVVGD   92 (433)
T ss_pred             CCH-HHHHHHHCCCcEEEH
Confidence            321 122223345555544

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=94.23  E-value=0.057  Score=49.10  Aligned_cols=38  Identities=18%  Similarity=0.403  Sum_probs=34.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHH
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRG   77 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~   77 (350)
                      |||..||.|.||..++..|+..+.  +++-||+|++..+.
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~gh--dvV~yD~n~~av~~   38 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGH--DVVGYDVNQTAVEE   38 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCC--eEEEEcCCHHHHHH
Confidence            689999999999999999999995  99999999976653

>PLN02686 cinnamoyl-CoA reductase

Probab=94.21  E-value=0.2  Score=48.73  Aligned_cols=107  Identities=11%  Similarity=0.110  Sum_probs=61.2

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh--h-cCCCceEEEc--CCc----cccC
Q 018760           35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA--A-FLPRTKILAS--VDY----AVTA  104 (350)
Q Consensus        35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~--~-~~~~~~v~~t--~~~----~al~  104 (350)
                      .++++|.|+|+ |.+|++++..|++.|.  +|+++..+.+.++.. ..+....  . ......+...  +|.    ++++
T Consensus        51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~  127 (367)
T PLN02686         51 AEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD  127 (367)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHHHHHHHHH
Confidence            34578999998 9999999999999985  888877665544321 1221100  0 0001222111  122    3477


Q ss_pred             CCCEEEEecCCCcCccc--cHHHHHHhhHHHHHHHHhhhhcc
Q 018760          105 GSDLCIVTAGARQIAGE--SRLNLLQRNLSLFKAIIPPLVKY  144 (350)
Q Consensus       105 ~aDiVIi~~g~~~~~g~--~r~~~~~~n~~i~~~i~~~i~~~  144 (350)
                      ++|.|+-+++.....+.  ....+...|+.-.+.+.+.+.+.
T Consensus       128 ~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~  169 (367)
T PLN02686        128 GCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRT  169 (367)
T ss_pred             hccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhc
Confidence            89999987654211121  11233445677777777777664

>PRK12746 short chain dehydrogenase; Provisional

Probab=94.17  E-value=0.94  Score=41.00  Aligned_cols=44  Identities=16%  Similarity=0.198  Sum_probs=32.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEE-eCCccchHHHHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALV-DAKADKLRGEMLDL   82 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~-D~~~~~l~~~~~dl   82 (350)
                      .++|.|+|+ |.+|+.++..|++.|.  +|.+. .+++++++....++
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~~   51 (254)
T PRK12746          6 GKVALVTGASRGIGRAIAMRLANDGA--LVAIHYGRNKQAADETIREI   51 (254)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHH
Confidence            368999998 9999999999999885  67664 56665554433333

>PRK07856 short chain dehydrogenase; Provisional

Probab=94.16  E-value=0.095  Score=47.70  Aligned_cols=37  Identities=19%  Similarity=0.318  Sum_probs=31.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccc
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADK   74 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~   74 (350)
                      +.+++.|+|+ |.+|..++..|+..+.  +|+++|+++++
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~~~   42 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRAPE   42 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCChhh
Confidence            3468899998 8999999999999885  89999998753

>PRK08628 short chain dehydrogenase; Provisional

Probab=94.15  E-value=1  Score=40.95  Aligned_cols=44  Identities=16%  Similarity=0.159  Sum_probs=35.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      ..+|.|+|| |.+|..++..|++.|.  ++++.+++++++ ....++.
T Consensus         7 ~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~-~~~~~~~   51 (258)
T PRK08628          7 DKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSAPDD-EFAEELR   51 (258)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCChhhH-HHHHHHH
Confidence            358999998 8999999999999985  789999988765 3334443

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=94.15  E-value=1.9  Score=42.62  Aligned_cols=132  Identities=17%  Similarity=0.273  Sum_probs=75.2

Q ss_pred             CCCCeEEEEcCChhHHHHHHH-----HHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc----ccc--
Q 018760           35 KRHTKISVIGTGNVGMAIAQT-----ILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY----AVT--  103 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~-----l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~----~al--  103 (350)
                      .++.+|+++|-+.+|-+....     +...+  ..|.++|.|..+.. ....+...... ....+....+.    +++  
T Consensus       239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~G--kkVglI~aDt~Ria-AvEQLk~yae~-lgipv~v~~d~~~L~~aL~~  314 (436)
T PRK11889        239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIG-TVQQLQDYVKT-IGFEVIAVRDEAAMTRALTY  314 (436)
T ss_pred             cCCcEEEEECCCCCcHHHHHHHHHHHHHHcC--CcEEEEecCCcchH-HHHHHHHHhhh-cCCcEEecCCHHHHHHHHHH
Confidence            345789999998888876432     33334  37999999988754 33344432111 12233322221    222  


Q ss_pred             -C---CCCEEEEe-cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC---CcchHHHHHHHHhCCCCCcE
Q 018760          104 -A---GSDLCIVT-AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN---PVDILTYVAWKLSGLPSNRV  175 (350)
Q Consensus       104 -~---~aDiVIi~-~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN---P~~~~~~~~~~~sg~~~~rv  175 (350)
                       +   +.|+|++- +|...           ++...+.++.+.+....|+.++++++-   +.+ +...+.++..++...+
T Consensus       315 lk~~~~~DvVLIDTaGRs~-----------kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d-~~~i~~~F~~~~idgl  382 (436)
T PRK11889        315 FKEEARVDYILIDTAGKNY-----------RASETVEEMIETMGQVEPDYICLTLSASMKSKD-MIEIITNFKDIHIDGI  382 (436)
T ss_pred             HHhccCCCEEEEeCccccC-----------cCHHHHHHHHHHHhhcCCCeEEEEECCccChHH-HHHHHHHhcCCCCCEE
Confidence             3   57999994 44322           344556667777777778877666642   222 3445555555666677


Q ss_pred             eeecCCccH
Q 018760          176 IGSGTNLDS  184 (350)
Q Consensus       176 iG~g~~ld~  184 (350)
                      | + |-+|.
T Consensus       383 I-~-TKLDE  389 (436)
T PRK11889        383 V-F-TKFDE  389 (436)
T ss_pred             E-E-EcccC
Confidence            6 4 55554

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=94.12  E-value=1  Score=40.99  Aligned_cols=39  Identities=10%  Similarity=0.124  Sum_probs=32.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHH
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRG   77 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~   77 (350)
                      +.++|.|+|| |.+|..++..|++.|.  +|++++++ ++++.
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~-~~~~~   53 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHG-TNWDE   53 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCC-cHHHH
Confidence            3468999999 8999999999999985  89999987 44443

>PRK08264 short chain dehydrogenase; Validated

Probab=94.11  E-value=0.89  Score=40.70  Aligned_cols=40  Identities=13%  Similarity=0.285  Sum_probs=33.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      +.++|.|+|+ |.+|..++..|++.|. .+|++++++.++++
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~   45 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVT   45 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhh
Confidence            4468999998 9999999999999884 37999999876554

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.08  E-value=0.94  Score=40.44  Aligned_cols=34  Identities=18%  Similarity=0.166  Sum_probs=27.7

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      +++|.|+|| |.+|..++..|++.+.  ++++.....
T Consensus         6 ~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~   40 (249)
T PRK12825          6 GRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSD   40 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCC
Confidence            458999999 9999999999999986  666655543

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=94.07  E-value=2.1  Score=38.88  Aligned_cols=113  Identities=12%  Similarity=0.104  Sum_probs=62.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc-----------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA-----------  101 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~-----------  101 (350)
                      +...+.|+|+ |.+|..++..|++.|.  +|+++|+++.  +....++....   ........  +|.+           
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~--~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~   81 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEP--TETIEQVTALG---RRFLSLTADLRKIDGIPALLERAVA   81 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcch--HHHHHHHHhcC---CeEEEEECCCCCHHHHHHHHHHHHH
Confidence            3457889998 8999999999999985  8888887542  22223333211   11111111  1111           


Q ss_pred             ccCCCCEEEEecCCCcC-c--cccH---HHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760          102 VTAGSDLCIVTAGARQI-A--GESR---LNLLQRNL----SLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       102 al~~aDiVIi~~g~~~~-~--g~~r---~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      .+...|++|.++|.... +  ..+.   ...+.-|.    .+.+.+.+.+.+..+.+.++++|.
T Consensus        82 ~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS  145 (253)
T PRK08993         82 EFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIAS  145 (253)
T ss_pred             HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence            12357999999886421 1  1111   22233343    344455555555445576777654

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=94.07  E-value=0.077  Score=52.20  Aligned_cols=33  Identities=24%  Similarity=0.541  Sum_probs=30.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      .||+|||||-+|.++|+.|++.+.  +|+++|...
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~--~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGY--QVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC--eEEEEeCCC
Confidence            499999999999999999999885  899999875

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=94.03  E-value=0.18  Score=53.07  Aligned_cols=119  Identities=10%  Similarity=0.088  Sum_probs=0.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc--cchHHHHHHHHHHhhcCCCceEEEcCCcccc---CCCCEE
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA--DKLRGEMLDLQHAAAFLPRTKILASVDYAVT---AGSDLC  109 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~--~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al---~~aDiV  109 (350)
                      +++||.|+|| |.+|++++..|+..+...+|+.+|...  +.+.................++.-....+.+   .++|+|
T Consensus         5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~V   84 (668)
T PLN02260          5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTI   84 (668)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEE


Q ss_pred             EEecCCCcCcc--ccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          110 IVTAGARQIAG--ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       110 Ii~~g~~~~~g--~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |-+++......  ....++...|+.-...+.+.+++.+.-..+|.+|
T Consensus        85 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~S  131 (668)
T PLN02260         85 MHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVS  131 (668)
T ss_pred             EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEc

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=94.03  E-value=0.14  Score=48.60  Aligned_cols=71  Identities=18%  Similarity=0.260  Sum_probs=44.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc------ccCCCCEE
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA------VTAGSDLC  109 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~------al~~aDiV  109 (350)
                      +++||+|||+|.+|..++..+...+.+.=+.++|+++++. +.  ......    ..... .++++      ++.+.|+|
T Consensus         3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~-gl--a~A~~~----Gi~~~-~~~ie~LL~~~~~~dIDiV   74 (302)
T PRK08300          3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESD-GL--ARARRL----GVATS-AEGIDGLLAMPEFDDIDIV   74 (302)
T ss_pred             CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhH-HH--HHHHHc----CCCcc-cCCHHHHHhCcCCCCCCEE
Confidence            4589999999999999888777655444456789988632 11  112111    11111 12332      23679999


Q ss_pred             EEecC
Q 018760          110 IVTAG  114 (350)
Q Consensus       110 Ii~~g  114 (350)
                      +++.+
T Consensus        75 f~AT~   79 (302)
T PRK08300         75 FDATS   79 (302)
T ss_pred             EECCC
Confidence            99864

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=93.99  E-value=0.18  Score=48.79  Aligned_cols=78  Identities=17%  Similarity=0.180  Sum_probs=44.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH-HHh-hc------CCCceEEEcCCcc-ccCCCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ-HAA-AF------LPRTKILASVDYA-VTAGSD  107 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~-~~~-~~------~~~~~v~~t~~~~-al~~aD  107 (350)
                      ++||+|+|+|.||+.++..+...+-+.=+.+.|.+++.....+.... +.. .+      .....+....+.+ .+.++|
T Consensus         1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vD   80 (341)
T PRK04207          1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKAD   80 (341)
T ss_pred             CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCC
Confidence            47999999999999999888776533334556655433322111100 000 00      0011233344453 467899


Q ss_pred             EEEEecC
Q 018760          108 LCIVTAG  114 (350)
Q Consensus       108 iVIi~~g  114 (350)
                      +||.+.+
T Consensus        81 VVIdaT~   87 (341)
T PRK04207         81 IVVDATP   87 (341)
T ss_pred             EEEECCC
Confidence            9999864

>PRK06924 short chain dehydrogenase; Provisional

Probab=93.96  E-value=0.095  Score=47.51  Aligned_cols=33  Identities=21%  Similarity=0.349  Sum_probs=29.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      ++|.|+|+ |.+|+.++..|++.|.  +|+++++++
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~   35 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE   35 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence            47999998 9999999999999985  899999876

>PRK12743 oxidoreductase; Provisional

Probab=93.94  E-value=0.75  Score=41.91  Aligned_cols=113  Identities=14%  Similarity=0.153  Sum_probs=61.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeC-CccchHHHHHHHHHHhhcCCCceEEEc--CCcc-----------c
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDA-KADKLRGEMLDLQHAAAFLPRTKILAS--VDYA-----------V  102 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~-~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~-----------a  102 (350)
                      .+|.|+|| |.+|..++..|++.|.  +|++++. +.+.++....++....   ....+...  ++.+           .
T Consensus         3 k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~   77 (256)
T PRK12743          3 QVAIVTASDSGIGKACALLLAQQGF--DIGITWHSDEEGAKETAEEVRSHG---VRAEIRQLDLSDLPEGAQALDKLIQR   77 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            47889999 8999999999999985  8877754 5554544334443211   11222211  1211           1


Q ss_pred             cCCCCEEEEecCCCcCc---cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 TAGSDLCIVTAGARQIA---GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~~---g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +...|+||.++|.....   ..+.   ...+..|    ..+++...+.+.+....+.+|++|.
T Consensus        78 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS  140 (256)
T PRK12743         78 LGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITS  140 (256)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEee
Confidence            23579999998764211   1111   1223333    3344444455544333456666664

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=93.94  E-value=0.34  Score=45.43  Aligned_cols=107  Identities=12%  Similarity=0.140  Sum_probs=61.4

Q ss_pred             EEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-----cCCCCEEEEec
Q 018760           40 ISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-----TAGSDLCIVTA  113 (350)
Q Consensus        40 I~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-----l~~aDiVIi~~  113 (350)
                      |.|+|| |.+|+.++..|+..+. .+|+++|.......  ...+.... ..  ..+......+.     +.++|+||.++
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~--~~~~~~~~-~~--~d~~~~~~~~~~~~~~~~~~D~vvh~A   74 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGI-TDILVVDNLRDGHK--FLNLADLV-IA--DYIDKEDFLDRLEKGAFGKIEAIFHQG   74 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCC-ceEEEEecCCCchh--hhhhhhee-ee--ccCcchhHHHHHHhhccCCCCEEEECc
Confidence            578998 9999999999999884 37888887543111  01111100 00  01100001122     25799999998


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +...............|......+.+.+.+...  .+|.+|
T Consensus        75 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S  113 (314)
T TIGR02197        75 ACSDTTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYAS  113 (314)
T ss_pred             cccCccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEc
Confidence            754222223344556777777888887777643  255554

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK06701 short chain dehydrogenase; Provisional

Probab=93.91  E-value=0.8  Score=42.87  Aligned_cols=35  Identities=17%  Similarity=0.253  Sum_probs=30.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      .++|.|+|| |.+|..++..|++.|.  +|++++++++
T Consensus        46 ~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~   81 (290)
T PRK06701         46 GKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEH   81 (290)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcc
Confidence            457999998 8999999999999985  8999999764

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=93.91  E-value=0.31  Score=39.38  Aligned_cols=33  Identities=18%  Similarity=0.391  Sum_probs=24.0

Q ss_pred             eEEEEcC-ChhHHHHHHHHHhcCCCCeEEE-EeCCc
Q 018760           39 KISVIGT-GNVGMAIAQTILTQDFVEELAL-VDAKA   72 (350)
Q Consensus        39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L-~D~~~   72 (350)
                      ||+|+|+ |.+|..++..+....-+ ++.- ++++.
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~-~l~av~~~~~   35 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDF-EVVALAASAR   35 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCc-eEEEEEechh
Confidence            6899997 89999999888886433 4444 46554

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=93.90  E-value=0.61  Score=51.38  Aligned_cols=73  Identities=15%  Similarity=0.329  Sum_probs=51.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc-------------------cchHHHHHHHHHHhhcCCCceEEEc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA-------------------DKLRGEMLDLQHAAAFLPRTKILAS   97 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~v~~t   97 (350)
                      ..+|.|+|+|.+|..++..|+..|+ +.|+|+|-+.                   .|+++....|+...   +..+|...
T Consensus        24 ~s~VLIiG~gGLG~EiaKnL~laGV-g~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLN---p~V~V~~~   99 (1008)
T TIGR01408        24 KSNVLISGMGGLGLEIAKNLVLAGV-KSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELN---PYVHVSSS   99 (1008)
T ss_pred             hCcEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHC---CCceEEEe
Confidence            4589999999999999999999997 6899999643                   23333333344332   44555544


Q ss_pred             CC-c--cccCCCCEEEEec
Q 018760           98 VD-Y--AVTAGSDLCIVTA  113 (350)
Q Consensus        98 ~~-~--~al~~aDiVIi~~  113 (350)
                      +. .  +-+++.|+||.+.
T Consensus       100 ~~~l~~e~l~~fdvVV~t~  118 (1008)
T TIGR01408       100 SVPFNEEFLDKFQCVVLTE  118 (1008)
T ss_pred             cccCCHHHHcCCCEEEECC
Confidence            32 2  4588999999984

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>PRK07201 short chain dehydrogenase; Provisional

Probab=93.88  E-value=0.87  Score=47.65  Aligned_cols=103  Identities=14%  Similarity=0.085  Sum_probs=60.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC------------ccccC
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD------------YAVTA  104 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~------------~~al~  104 (350)
                      |||.|+|| |.+|++++..|+......+|++++++.....  ...+...... ...++.. .|            .+.++
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~--~~~~~~~~~~-~~v~~~~-~Dl~~~~~~~~~~~~~~l~   76 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSR--LEALAAYWGA-DRVVPLV-GDLTEPGLGLSEADIAELG   76 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHHH--HHHHHHhcCC-CcEEEEe-cccCCccCCcCHHHHHHhc
Confidence            58999999 9999999999985322248999999653211  1122111100 1112211 11            12347


Q ss_pred             CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC
Q 018760          105 GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS  145 (350)
Q Consensus       105 ~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~  145 (350)
                      ++|+||.+++... ......+....|+.-.+.+++.+.+..
T Consensus        77 ~~D~Vih~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~  116 (657)
T PRK07201         77 DIDHVVHLAAIYD-LTADEEAQRAANVDGTRNVVELAERLQ  116 (657)
T ss_pred             CCCEEEECceeec-CCCCHHHHHHHHhHHHHHHHHHHHhcC
Confidence            8999999987432 122334455667777777777777653

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.88  E-value=0.22  Score=46.77  Aligned_cols=75  Identities=20%  Similarity=0.335  Sum_probs=53.7

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      ....+|+|||. |.||.+++..|+..+.  .|+++...                         |.+. +.+++||+||.+
T Consensus       156 l~Gk~v~vIG~S~ivG~Pla~lL~~~ga--tVtv~~s~-------------------------t~~l~~~~~~ADIVI~a  208 (284)
T PRK14179        156 LEGKHAVVIGRSNIVGKPMAQLLLDKNA--TVTLTHSR-------------------------TRNLAEVARKADILVVA  208 (284)
T ss_pred             CCCCEEEEECCCCcCcHHHHHHHHHCCC--EEEEECCC-------------------------CCCHHHHHhhCCEEEEe
Confidence            34579999999 9999999999999885  77776211                         1133 457899999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc-CC
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA-NP  156 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t-NP  156 (350)
                      +|.|.-   -+.++                 ..|.+++|.++ |+
T Consensus       209 vg~~~~---v~~~~-----------------ik~GavVIDvgin~  233 (284)
T PRK14179        209 IGRGHF---VTKEF-----------------VKEGAVVIDVGMNR  233 (284)
T ss_pred             cCcccc---CCHHH-----------------ccCCcEEEEeccee
Confidence            986531   11111                 46889988886 65

>PRK06128 oxidoreductase; Provisional

Probab=93.88  E-value=1.5  Score=41.17  Aligned_cols=34  Identities=21%  Similarity=0.280  Sum_probs=29.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      ++|.|+|+ |.+|..++..|+..|.  +|++.+++.+
T Consensus        56 k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~   90 (300)
T PRK06128         56 RKALITGADSGIGRATAIAFAREGA--DIALNYLPEE   90 (300)
T ss_pred             CEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcc
Confidence            57999998 9999999999999985  8888877543

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=93.86  E-value=1.3  Score=35.67  Aligned_cols=106  Identities=22%  Similarity=0.320  Sum_probs=58.7

Q ss_pred             CeEEEEcC----ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcccc-CCCCEEEEe
Q 018760           38 TKISVIGT----GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVT-AGSDLCIVT  112 (350)
Q Consensus        38 ~KI~IIGA----G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al-~~aDiVIi~  112 (350)
                      ++|+|||+    ++.|..+...|.+.|.  +|+.++...+.+.+              .+.  ..+.++. ...|+++++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~--~v~~Vnp~~~~i~G--------------~~~--y~sl~e~p~~iDlavv~   62 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGY--EVYPVNPKGGEILG--------------IKC--YPSLAEIPEPIDLAVVC   62 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT---EEEEESTTCSEETT--------------EE---BSSGGGCSST-SEEEE-
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCC--EEEEECCCceEECc--------------EEe--eccccCCCCCCCEEEEE
Confidence            47999996    5778888888888774  89999887654432              122  2344434 789999998


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCC
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTN  181 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~  181 (350)
                      .                +.....++.+++.+.+..++++.-+--..-+...+ +..|+   +++|-.|.
T Consensus        63 ~----------------~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a-~~~gi---~vigp~C~  111 (116)
T PF13380_consen   63 V----------------PPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAA-REAGI---RVIGPNCL  111 (116)
T ss_dssp             S-----------------HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHH-HHTT----EEEESS-H
T ss_pred             c----------------CHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHH-HHcCC---EEEeCCcc
Confidence            5                23444555566666666775555551111122222 33465   78877664

>PRK12747 short chain dehydrogenase; Provisional

Probab=93.84  E-value=1.4  Score=39.98  Aligned_cols=45  Identities=18%  Similarity=0.267  Sum_probs=33.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEe-CCccchHHHHHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVD-AKADKLRGEMLDLQ   83 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D-~~~~~l~~~~~dl~   83 (350)
                      .+++.|+|+ |.+|.+++..|+..|.  +|++.+ .++++++....++.
T Consensus         4 ~k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~   50 (252)
T PRK12747          4 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYGNRKEEAEETVYEIQ   50 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcCCCHHHHHHHHHHHH
Confidence            357889998 8999999999999985  788875 45555554444443

>PRK08226 short chain dehydrogenase; Provisional

Probab=93.83  E-value=0.7  Score=42.14  Aligned_cols=35  Identities=20%  Similarity=0.350  Sum_probs=30.8

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      .+++.|+|+ |.+|..++..|+..|.  +|++++++++
T Consensus         6 ~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~~   41 (263)
T PRK08226          6 GKTALITGALQGIGEGIARVFARHGA--NLILLDISPE   41 (263)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHH
Confidence            358899998 9999999999999985  8999999864

>PRK06847 hypothetical protein; Provisional

Probab=93.80  E-value=0.098  Score=50.63  Aligned_cols=36  Identities=19%  Similarity=0.374  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      ++.+|+|||||..|.++|..|.+.|+  +++++|.+++
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~g~--~v~v~E~~~~   38 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRAGI--AVDLVEIDPE   38 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhCCC--CEEEEecCCC
Confidence            46799999999999999999999986  8999998653

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=93.79  E-value=0.19  Score=45.68  Aligned_cols=47  Identities=17%  Similarity=0.227  Sum_probs=38.7

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      .+.++|.|+|+ |.+|..++..|+..|.  +|++++++++.++....++.
T Consensus         9 ~~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~   56 (256)
T PRK06124          9 LAGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALR   56 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHH
Confidence            44578999999 8999999999999885  89999999877765555554

>PRK08163 salicylate hydroxylase; Provisional

Probab=93.77  E-value=0.097  Score=51.11  Aligned_cols=36  Identities=25%  Similarity=0.455  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      ++++|+|||||-.|.++|..|...|+  +|+++|..++
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g~--~v~v~Er~~~   38 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQGI--KVKLLEQAAE   38 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCC--cEEEEeeCcc
Confidence            45799999999999999999999997  8999998754

>PRK06753 hypothetical protein; Provisional

Probab=93.77  E-value=0.09  Score=50.88  Aligned_cols=34  Identities=26%  Similarity=0.461  Sum_probs=31.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      |||+|||||..|.++|..|.+.|+  ++++++.++.
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~--~v~v~E~~~~   34 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGH--EVKVFEKNES   34 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC--cEEEEecCCc
Confidence            689999999999999999999997  8999998763

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=93.69  E-value=1.7  Score=39.50  Aligned_cols=34  Identities=21%  Similarity=0.322  Sum_probs=30.1

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      .+++.|+|+ |.+|..++..|++.|.  +|+++|+++
T Consensus         8 ~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~   42 (260)
T PRK12823          8 GKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSE   42 (260)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence            357899998 9999999999999985  899999975

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=93.69  E-value=0.62  Score=44.60  Aligned_cols=106  Identities=10%  Similarity=0.075  Sum_probs=57.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH-HHHHHHH-HHhh-cCCCceEEEc--CCc----cccC--C
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR-GEMLDLQ-HAAA-FLPRTKILAS--VDY----AVTA--G  105 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~-~~~~dl~-~~~~-~~~~~~v~~t--~~~----~al~--~  105 (350)
                      +||.|+|| |.+|++++..|+..|.  +|+++|++.+... .....+. +... ......+...  +|.    +.++  +
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~   78 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK   78 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence            48999998 9999999999999985  8999998754211 0111111 0000 0011222211  122    2345  3


Q ss_pred             CCEEEEecCCCcCc-c-ccHHHHHHhhHHHHHHHHhhhhccC
Q 018760          106 SDLCIVTAGARQIA-G-ESRLNLLQRNLSLFKAIIPPLVKYS  145 (350)
Q Consensus       106 aDiVIi~~g~~~~~-g-~~r~~~~~~n~~i~~~i~~~i~~~~  145 (350)
                      .|+||-+++..... . ......+..|+.-...+.+.+.+.+
T Consensus        79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~  120 (343)
T TIGR01472        79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLG  120 (343)
T ss_pred             CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhC
Confidence            69999998753221 1 1122333445555566666666543

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK06114 short chain dehydrogenase; Provisional

Probab=93.68  E-value=0.41  Score=43.63  Aligned_cols=46  Identities=22%  Similarity=0.290  Sum_probs=34.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc-chHHHHHHHH
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD-KLRGEMLDLQ   83 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~-~l~~~~~dl~   83 (350)
                      +.+++.|+|+ |.+|..++..|++.|.  +|++.|++.+ .++....++.
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~   54 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRTDDGLAETAEHIE   54 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHH
Confidence            3457889998 8999999999999985  8999998754 3443334444

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=93.65  E-value=0.65  Score=39.02  Aligned_cols=114  Identities=12%  Similarity=0.153  Sum_probs=65.8

Q ss_pred             eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCC--ccchHHHHHHHHHHhhcCCCceEEEc--CCc-------c----c
Q 018760           39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAK--ADKLRGEMLDLQHAAAFLPRTKILAS--VDY-------A----V  102 (350)
Q Consensus        39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~--~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-------~----a  102 (350)
                      .+.|+|| +.+|..++..|++.+- ..|++++++  .++++.....+....   ....+...  ++.       +    .
T Consensus         2 ~~lItGa~~giG~~~a~~l~~~g~-~~v~~~~r~~~~~~~~~l~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   77 (167)
T PF00106_consen    2 TVLITGASSGIGRALARALARRGA-RVVILTSRSEDSEGAQELIQELKAPG---AKITFIECDLSDPESIRALIEEVIKR   77 (167)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTT-EEEEEEESSCHHHHHHHHHHHHHHTT---SEEEEEESETTSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCc-eEEEEeeecccccccccccccccccc---cccccccccccccccccccccccccc
Confidence            4778898 8999999999999953 478999998  444444444444211   11122211  111       1    2


Q ss_pred             cCCCCEEEEecCCCcCcc--ccH----HHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc
Q 018760          103 TAGSDLCIVTAGARQIAG--ESR----LNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV  157 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~~g--~~r----~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~  157 (350)
                      ....|++|.++|......  ...    ...+.-|+.-...+.+.+.. .+.+.+|++|-..
T Consensus        78 ~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~g~iv~~sS~~  137 (167)
T PF00106_consen   78 FGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP-QGGGKIVNISSIA  137 (167)
T ss_dssp             HSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH-HTTEEEEEEEEGG
T ss_pred             cccccccccccccccccccccccchhhhhccccccceeeeeeehhee-ccccceEEecchh
Confidence            347899999988755211  111    22344454444444444444 5577788887443

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=93.65  E-value=0.23  Score=48.10  Aligned_cols=72  Identities=22%  Similarity=0.456  Sum_probs=45.8

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHhcC-C-CCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEE
Q 018760           35 KRHTKISVIGT-GNVGMAIAQTILTQD-F-VEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIV  111 (350)
Q Consensus        35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~-~-~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi  111 (350)
                      .+.+||+|||| |.+|..+...|.... + +.+|.++.....  .+....+..     ....+.. .+.++++++|+|++
T Consensus         3 ~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~s--aGk~~~~~~-----~~l~v~~-~~~~~~~~~Divf~   74 (347)
T PRK06728          3 EKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRS--AGKTVQFKG-----REIIIQE-AKINSFEGVDIAFF   74 (347)
T ss_pred             CCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECccc--CCCCeeeCC-----cceEEEe-CCHHHhcCCCEEEE
Confidence            45579999999 999999999888644 3 346888766432  111111110     1223332 24456789999999


Q ss_pred             ecC
Q 018760          112 TAG  114 (350)
Q Consensus       112 ~~g  114 (350)
                      +.+
T Consensus        75 a~~   77 (347)
T PRK06728         75 SAG   77 (347)
T ss_pred             CCC
Confidence            865

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.65  E-value=0.56  Score=47.63  Aligned_cols=89  Identities=17%  Similarity=0.219  Sum_probs=55.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC-ccccCCCCEEEEecCCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD-YAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~-~~al~~aDiVIi~~g~~  116 (350)
                      .||.|+|+|..|.+.+..|...|.  +|...|.++++++    .+...     ...+....+ .+.++++|+||.+.|.|
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~--~v~~~D~~~~~~~----~l~~~-----g~~~~~~~~~~~~l~~~D~VV~SpGi~   81 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGA--RPTVCDDDPDALR----PHAER-----GVATVSTSDAVQQIADYALVVTSPGFR   81 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHH----HHHhC-----CCEEEcCcchHhHhhcCCEEEECCCCC
Confidence            489999999999999988888885  8999997654332    22221     123332222 24578899999999887


Q ss_pred             cCccccHHHHHHhhHHHHHHHH
Q 018760          117 QIAGESRLNLLQRNLSLFKAII  138 (350)
Q Consensus       117 ~~~g~~r~~~~~~n~~i~~~i~  138 (350)
                      ...- .....-.++++++.++-
T Consensus        82 ~~~p-~~~~a~~~gi~v~~~ie  102 (488)
T PRK03369         82 PTAP-VLAAAAAAGVPIWGDVE  102 (488)
T ss_pred             CCCH-HHHHHHHCCCcEeeHHH
Confidence            5321 11111234556655443

>TIGR01746 Thioester-redct thioester reductase domain

Probab=93.63  E-value=1  Score=42.87  Aligned_cols=108  Identities=11%  Similarity=0.081  Sum_probs=61.9

Q ss_pred             eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH---HHHHHHHHHhh----cC-CCceEEEcCC----------
Q 018760           39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR---GEMLDLQHAAA----FL-PRTKILASVD----------   99 (350)
Q Consensus        39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~---~~~~dl~~~~~----~~-~~~~v~~t~~----------   99 (350)
                      +|.|+|| |.+|++++..|+..+...+|+++.++.+...   .....+.....    .. ....+.. .|          
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~-~D~~~~~~gl~~   79 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVA-GDLSEPRLGLSD   79 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEe-CCcCcccCCcCH
Confidence            5789999 9999999999999874347999988765322   11111111100    00 1222221 12          


Q ss_pred             --c-cccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCe
Q 018760          100 --Y-AVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDC  148 (350)
Q Consensus       100 --~-~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a  148 (350)
                        + +..+++|+||.+++... ......++...|+.-...+.+.+.+.....
T Consensus        80 ~~~~~~~~~~d~vih~a~~~~-~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~  130 (367)
T TIGR01746        80 AEWERLAENVDTIVHNGALVN-WVYPYSELRAANVLGTREVLRLAASGRAKP  130 (367)
T ss_pred             HHHHHHHhhCCEEEeCCcEec-cCCcHHHHhhhhhHHHHHHHHHHhhCCCce
Confidence              1 22468999999876432 112233445567766677777666654443

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PRK08278 short chain dehydrogenase; Provisional

Probab=93.62  E-value=1.7  Score=40.20  Aligned_cols=35  Identities=17%  Similarity=0.336  Sum_probs=30.6

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      .+++.|+|| |.+|..++..|++.|.  +|++++++.+
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~   41 (273)
T PRK08278          6 GKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTAE   41 (273)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecccc
Confidence            357899998 9999999999999985  8999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	350
4aj4_A	332	Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Be		8e-94
4aj1_A	331	Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Be		9e-94
3h3f_A	331	Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi		1e-92
1i10_A	331	Human Muscle L-Lactate Dehydrogenase M Chain, Terna		3e-92
4ajp_A	337	Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-		3e-92
9ldt_A	332	Design And Synthesis Of New Enzymes Based On The La		4e-92
1i0z_A	333	Human Heart L-Lactate Dehydrogenase H Chain, Ternar		6e-90
1t2f_A	333	Human B Lactate Dehydrogenase Complexed With Nad+ A		6e-90
5ldh_A	334	Structure Of The Active Ternary Complex Of Pig Hear		4e-89
6ldh_A	330	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		3e-88
1ldm_A	329	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		3e-88
1v6a_A	332	Crystal Structure Of L-Lactate Dehydrogenase From C		1e-87
2v65_A	331	Apo Ldh From The Psychrophile C. Gunnari Length = 3		8e-87
2ldx_A	331	Characterization Of The Antigenic Sites On The Refi		4e-85
3ldh_A	330	A Comparison Of The Structures Of Apo Dogfish M4 La		3e-67
1lld_A	319	Molecular Basis Of Allosteric Activation Of Bacteri		4e-65
3pqd_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		8e-62
3pqe_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		2e-61
3h3j_A	317	Crystal Structure Of Lactate Dehydrogenase Mutant (		5e-59
2zqy_A	326	T-State Structure Of Allosteric L-Lactate Dehydroge		2e-58
3d0o_A	317	Crystal Structure Of Lactate Dehydrogenase From Sta		4e-58
1llc_A	325	Structure Determination Of The Allosteric L-Lactate		6e-58
3vku_A	326	Penta Mutant Of Lactobacillus Casei Lactate Dehydro		2e-57
1ldn_A	316	Structure Of A Ternary Complex Of An Allosteric Lac		7e-56
1ldb_A	317	Structure Determination And Refinement Of Bacillus		8e-56
1ez4_A	318	Crystal Structure Of Non-Allosteric L-Lactate Dehyd		1e-54
4a73_A	310	Single Point Mutant Of Thermus Thermophilus Lactate		7e-53
2v6m_A	310	Crystal Structure Of Lactate Dehydrogenase From The		9e-53
2xxb_A	310	Penta-Mutant Of Thermus Thermophilus Lactate Dehydr		3e-52
1y6j_A	318	L-Lactate Dehydrogenase From Clostridium Thermocell		2e-50
1a5z_A	319	Lactate Dehydrogenase From Thermotoga Maritima (tml		1e-49
2e37_A	310	Structure Of Tt0471 Protein From Thermus Thermophil		1e-48
3nep_X	314	1.55a Resolution Structure Of Malate Dehydrogenase		2e-48
1gv1_A	310	Structural Basis For Thermophilic Protein Stability		2e-43
1guz_A	310	Structural Basis For Thermophilic Protein Stability		3e-43
2v6b_A	304	Crystal Structure Of Lactate Dehydrogenase From Dei		5e-43
1gv0_A	310	Structural Basis For Thermophilic Protein Stability		3e-42
2i6t_A	303	Orthorhombic Structure Of The Ldh Domain Of Human U		3e-42
2x0i_A	294	2.9 A Resolution Structure Of Malate Dehydrogenase		1e-40
1sov_A	328	Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Ap		9e-39
3czm_A	326	T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex		1e-38
3tl2_A	315	Crystal Structure Of Bacillus Anthracis Str. Ames M		1e-36
2d4a_A	308	Structure Of The Malate Dehydrogenase From Aeropyru		6e-36
1uxh_A	309	Large Improvement In The Thermal Stability Of A Tet		6e-35
2fm3_A	321	Crystal Structure Of The Lactate Dehydrogenase From		9e-35
2ewd_A	317	Crystal Structure Of The Lactate Dehydrogenase From		1e-34
1guy_A	309	Structural Basis For Thermophilic Protein Stability		2e-34
1uxi_A	309	Large Improvement In The Thermal Stability Of A Tet		2e-34
1ur5_A	309	Stabilization Of A Tetrameric Malate Dehydrogenase		2e-34
1hyh_A	309	Crystal Structure Of L-2-hydroxyisocaproate Dehydro		5e-34
1cet_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		8e-34
1ceq_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		9e-34
1xiv_A	323	Plasmodium Falciparum Lactate Dehydrogenase Complex		2e-33
1t24_A	322	Plasmodium Falciparum Lactate Dehydrogenase Complex		2e-33
1u4o_A	321	Plasmodium Falciparum Lactate Dehydrogenase Complex		2e-33
3gvh_A	324	Crystal Structure Of LactateMALATE DEHYDROGENASE FR		3e-33
1t2e_A	322	Plasmodium Falciparum Lactate Dehydrogenase S245a,		5e-33
3om9_A	329	T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex		4e-32
1pze_A	331	T.gondii Ldh1 Apo Form Length = 331		4e-32
2a92_A	321	Crystal Structure Of Lactate Dehydrogenase From Pla		6e-32
1pzg_A	331	T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.		6e-32
1oc4_A	322	Lactate Dehydrogenase From Plasmodium Berghei Lengt		1e-31
1o6z_A	303	1.95 A Resolution Structure Of (r207s,r292s) Mutant		4e-31
2x0r_A	304	R207s,R292s Mutant Of Malate Dehydrogenase From The		4e-31
2hlp_A	303	Crystal Structure Of The E267r Mutant Of A Halophil		6e-31
2j5k_A	304	2.0 A Resolution Structure Of The Wild Type Malate		9e-31
1hlp_A	303	Structural Features Stabilizing Halophilic Malate D		9e-31
3p7m_A	321	Structure Of Putative Lactate Dehydrogenase From Fr		1e-29
2hjr_A	328	Crystal Structure Of Cryptosporidium Parvum Malate		2e-29
1hyg_A	313	Crystal Structure Of Mj0490 Gene Product, The Famil		6e-29
3fi9_A	343	Crystal Structure Of Malate Dehydrogenase From Porp		8e-09
1emd_A	312	Crystal Structure Of A Ternary Complex Of Escherich		9e-08
2pwz_A	312	Crystal Structure Of The Apo Form Of E.Coli Malate		9e-07
1sev_A	362	Mature And Translocatable Forms Of Glyoxysomal Mala		2e-06
1smk_A	326	Mature And Translocatable Forms Of Glyoxysomal Mala		2e-06
1ib6_A	312	Crystal Structure Of R153c E. Coli Malate Dehydroge		1e-05
4e0b_A	313	2.17 Angstrom Resolution Crystal Structure Of Malat		3e-04

>pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl) Amino)-4-Oxo-Butanoic Acid Length = 332

Iteration: 1
 Score =  340 bits (872), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 168/312 (53%), Positives = 217/312 (69%), Gaps = 1/312 (0%)
Query: 37  HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
             KI+V+G G VGMA A +IL +D  +ELALVD   DKL+GEM+DLQH + FL   KI++
Sbjct: 20  QNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVS 79
Query: 97  SVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANP 156
           S DY+VTA S L I+TAGARQ  GE            FK IIP +VKYSP C LLIV+NP
Sbjct: 80  SKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNP 139
Query: 157 VDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVA 216
           VDILTYVAWK+SG P NRVIGSG NLDS+RFR+L+ + L V+      +++GEHGDSSV 
Sbjct: 140 VDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVP 199
Query: 217 LWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANL 276
           +WS ++V GV + S   +     +KE  + +HK+VVDSAYEVI LKGYTSWAIG S A+L
Sbjct: 200 VWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKGYTSWAIGLSVADL 259
Query: 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336
           A SI+++ R++HP+S + KG YGI   DVFLS+P  LG+ G+  V  + L  +E  RL+ 
Sbjct: 260 AESIMKNLRRVHPISTMIKGLYGIK-EDVFLSVPCILGQNGISDVVKVTLTPDEEARLKK 318
Query: 337 SAKTILEVQSQL 348
           SA T+  +Q +L
Sbjct: 319 SADTLWGIQKEL 330

>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Benzothiazol-6-Yl)acetamide Length = 331

Iteration: 1
 Score =  340 bits (871), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 168/312 (53%), Positives = 217/312 (69%), Gaps = 1/312 (0%)
Query: 37  HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
             KI+V+G G VGMA A +IL +D  +ELALVD   DKL+GEM+DLQH + FL   KI++
Sbjct: 19  QNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVS 78
Query: 97  SVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANP 156
           S DY+VTA S L I+TAGARQ  GE            FK IIP +VKYSP C LLIV+NP
Sbjct: 79  SKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNP 138
Query: 157 VDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVA 216
           VDILTYVAWK+SG P NRVIGSG NLDS+RFR+L+ + L V+      +++GEHGDSSV 
Sbjct: 139 VDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVP 198
Query: 217 LWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANL 276
           +WS ++V GV + S   +     +KE  + +HK+VVDSAYEVI LKGYTSWAIG S A+L
Sbjct: 199 VWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKGYTSWAIGLSVADL 258
Query: 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336
           A SI+++ R++HP+S + KG YGI   DVFLS+P  LG+ G+  V  + L  +E  RL+ 
Sbjct: 259 AESIMKNLRRVHPISTMIKGLYGIK-EDVFLSVPCILGQNGISDVVKVTLTPDEEARLKK 317
Query: 337 SAKTILEVQSQL 348
           SA T+  +Q +L
Sbjct: 318 SADTLWGIQKEL 329

>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score =  336 bits (862), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 166/312 (53%), Positives = 216/312 (69%), Gaps = 1/312 (0%)
Query: 37  HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
             KI+V+G G VGMA A +IL +D  +ELALVD   DKL+GEM+DLQH + FL   KI++
Sbjct: 19  QNKITVVGVGAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLRTPKIVS 78
Query: 97  SVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANP 156
             DY+VTA S L I+TAGARQ  GE            FK IIP +VKYSP C LL+V+NP
Sbjct: 79  GKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPHCKLLVVSNP 138
Query: 157 VDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVA 216
           VDILTYVAWK+SG P NRVIGSG NLDS+RFR+L+ + L V+A     +I+GEHGDSSV 
Sbjct: 139 VDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHGWILGEHGDSSVP 198
Query: 217 LWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANL 276
           +WS ++V GV + +   +     +KE  + +HK+VVDSAYEVI LKGYT+WAIG S A+L
Sbjct: 199 VWSGMNVAGVSLKTLHPELGTDADKEQWKQVHKQVVDSAYEVIKLKGYTTWAIGLSVADL 258
Query: 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336
           A SI+++ R++HP+S + KG YGI   DVFLS+P  LG+ G+  V  + L  EE   L+ 
Sbjct: 259 AESIMKNLRRVHPISTMLKGLYGIK-EDVFLSVPCVLGQNGISDVVKVTLTSEEEAHLKK 317
Query: 337 SAKTILEVQSQL 348
           SA T+  +Q +L
Sbjct: 318 SADTLWGIQKEL 329

>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score =  335 bits (858), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 166/312 (53%), Positives = 215/312 (68%), Gaps = 1/312 (0%)
Query: 37  HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
             KI+V+G G VGMA A +IL +D  +ELALVD   DKL+GEM+DLQH + FL   KI++
Sbjct: 19  QNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPKIVS 78
Query: 97  SVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANP 156
             DY VTA S L I+TAGARQ  GE            FK IIP +VKYSP+C LLIV+NP
Sbjct: 79  GKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNP 138
Query: 157 VDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVA 216
           VDILTYVAWK+SG P NRVIGSG NLDS+RFR+L+ + L V+      +++GEHGDSSV 
Sbjct: 139 VDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVP 198
Query: 217 LWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANL 276
           +WS ++V GV + +         +KE  + +HK+VV+SAYEVI LKGYTSWAIG S A+L
Sbjct: 199 VWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADL 258
Query: 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336
           A SI+++ R++HPVS + KG YGI   DVFLS+P  LG+ G+  +  + L  EE  RL+ 
Sbjct: 259 AESIMKNLRRVHPVSTMIKGLYGIK-DDVFLSVPCILGQNGISDLVKVTLTSEEEARLKK 317
Query: 337 SAKTILEVQSQL 348
           SA T+  +Q +L
Sbjct: 318 SADTLWGIQKEL 329

>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337

Iteration: 1
 Score =  335 bits (858), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 166/312 (53%), Positives = 215/312 (68%), Gaps = 1/312 (0%)
Query: 37  HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
             KI+V+G G VGMA A +IL +D  +ELALVD   DKL+GEM+DLQH + FL   KI++
Sbjct: 19  QNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRTPKIVS 78
Query: 97  SVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANP 156
             DY VTA S L I+TAGARQ  GE            FK IIP +VKYSP+C LLIV+NP
Sbjct: 79  GKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNP 138
Query: 157 VDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVA 216
           VDILTYVAWK+SG P NRVIGSG NLDS+RFR+L+ + L V+      +++GEHGDSSV 
Sbjct: 139 VDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVP 198
Query: 217 LWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANL 276
           +WS ++V GV + +         +KE  + +HK+VV+SAYEVI LKGYTSWAIG S A+L
Sbjct: 199 VWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLKGYTSWAIGLSVADL 258
Query: 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336
           A SI+++ R++HPVS + KG YGI   DVFLS+P  LG+ G+  +  + L  EE  RL+ 
Sbjct: 259 AESIMKNLRRVHPVSTMIKGLYGIK-DDVFLSVPCILGQNGISDLVKVTLTSEEEARLKK 317
Query: 337 SAKTILEVQSQL 348
           SA T+  +Q +L
Sbjct: 318 SADTLWGIQKEL 329

>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332

Iteration: 1
 Score =  334 bits (857), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 164/312 (52%), Positives = 217/312 (69%), Gaps = 1/312 (0%)
Query: 37  HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
           H KI+V+G G VGMA A +IL ++  +E+ALVD   DKL+GEM+DLQH + FL   KI++
Sbjct: 20  HNKITVVGVGAVGMACAISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRTPKIVS 79
Query: 97  SVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANP 156
             DY VTA S L ++TAGARQ  GE            FK IIP +VKYSP+C LL+V+NP
Sbjct: 80  GKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLVVSNP 139
Query: 157 VDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVA 216
           VDILTYVAWK+SG P NRVIGSG NLDS+RFR+L+ + L V+      +I+GEHGDSSV 
Sbjct: 140 VDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWILGEHGDSSVP 199
Query: 217 LWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANL 276
           +WS ++V GV + +   +     +KE  +++HKEVVDSAYEVI LKGYTSWAIG S A+L
Sbjct: 200 VWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKEVVDSAYEVIKLKGYTSWAIGLSVADL 259
Query: 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336
           A SI+++ R++HP+S + KG YGI   +VFLS+P  LG+ G+  V  + L  EE   L+ 
Sbjct: 260 AESIMKNLRRVHPISTMIKGLYGIK-ENVFLSVPCILGQNGISDVVKVTLTPEEEAHLKK 318
Query: 337 SAKTILEVQSQL 348
           SA T+  +Q +L
Sbjct: 319 SADTLWGIQKEL 330

>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary Complex With Nadh And Oxamate Length = 333

Iteration: 1
 Score =  327 bits (838), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 164/332 (49%), Positives = 219/332 (65%), Gaps = 4/332 (1%)
Query: 17  LTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR 76
           L +    P+   A    T  + KI+V+G G VGMA A +IL +   +ELALVD   DKL+
Sbjct: 3   LKEKLIAPV---AEEEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK 59
Query: 77  GEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKA 136
           GEM+DLQH + FL   KI+A  DY+VTA S + +VTAG RQ  GE            FK 
Sbjct: 60  GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF 119
Query: 137 IIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLD 196
           IIP +VKYSPDCI+++V+NPVDILTYV WKLSGLP +RVIGSG NLDS+RFR+L+A+ L 
Sbjct: 120 IIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLG 179
Query: 197 VNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAY 256
           ++      +I+GEHGDSSVA+WS ++V GV +     +     + E  + +HK VV+SAY
Sbjct: 180 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAY 239
Query: 257 EVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRG 316
           EVI LKGYT+WAIG S A+L  S++++  +IHPVS + KG YGI+  +VFLSLP  L   
Sbjct: 240 EVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIE-NEVFLSLPCILNAR 298
Query: 317 GVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348
           G+  V N  L  +E  +L+ SA T+ ++Q  L
Sbjct: 299 GLTSVINQKLKDDEVAQLKKSADTLWDIQKDL 330

>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 333

Iteration: 1
 Score =  327 bits (838), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 164/332 (49%), Positives = 219/332 (65%), Gaps = 4/332 (1%)
Query: 17  LTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR 76
           L +    P+   A    T  + KI+V+G G VGMA A +IL +   +ELALVD   DKL+
Sbjct: 3   LKEKLIAPV---AEEEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK 59
Query: 77  GEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKA 136
           GEM+DLQH + FL   KI+A  DY+VTA S + +VTAG RQ  GE            FK 
Sbjct: 60  GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF 119
Query: 137 IIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLD 196
           IIP +VKYSPDCI+++V+NPVDILTYV WKLSGLP +RVIGSG NLDS+RFR+L+A+ L 
Sbjct: 120 IIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLG 179
Query: 197 VNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAY 256
           ++      +I+GEHGDSSVA+WS ++V GV +     +     + E  + +HK VV+SAY
Sbjct: 180 IHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAY 239
Query: 257 EVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRG 316
           EVI LKGYT+WAIG S A+L  S++++  +IHPVS + KG YGI+  +VFLSLP  L   
Sbjct: 240 EVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIE-NEVFLSLPCILNAR 298
Query: 317 GVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348
           G+  V N  L  +E  +L+ SA T+ ++Q  L
Sbjct: 299 GLTSVINQKLKDDEVAQLKKSADTLWDIQKDL 330

>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms Resolution Length = 334

Iteration: 1
 Score =  324 bits (831), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 163/332 (49%), Positives = 218/332 (65%), Gaps = 4/332 (1%)
Query: 17  LTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR 76
           L +    P+       P     KI+V+G G VGMA A +IL +   +ELALVD   DKL+
Sbjct: 4   LKEKLIAPVAQQETTIP---DNKITVVGVGQVGMACAISILGKSLTDELALVDVLEDKLK 60
Query: 77  GEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKA 136
           GEM+DLQH + FL   KI+A+ DY+VTA S + +VTAG RQ  GE            FK 
Sbjct: 61  GEMMDLQHGSLFLQTPKIVANKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF 120
Query: 137 IIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLD 196
           IIP +VKYSP+CI+++V+NPVDILTYVAWKLSGLP +RVIGSG NLDS+RFR+L+ + L 
Sbjct: 121 IIPQIVKYSPNCIIIVVSNPVDILTYVAWKLSGLPKHRVIGSGCNLDSARFRYLMGEKLG 180
Query: 197 VNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAY 256
           V+      +I+GEHGDSSVA+WS ++V GV +     +     + E  + +HK VV+SAY
Sbjct: 181 VHPSSCHGWILGEHGDSSVAVWSGVNVAGVVLQQLNPEMGTDNDSENWKEVHKMVVESAY 240
Query: 257 EVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRG 316
           EVI LKGYT+WAIG S A+L  S++++  +IHPVS + +G YGI+  +VFLSLP  L   
Sbjct: 241 EVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVQGMYGIE-NEVFLSLPCVLNAR 299
Query: 317 GVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348
           G+  V N  L  +E  +L+NSA T+  +Q  L
Sbjct: 300 GLTSVINQKLKDDEVAQLKNSADTLWGIQKDL 331

>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 330

Iteration: 1
 Score =  322 bits (824), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 157/326 (48%), Positives = 220/326 (67%), Gaps = 4/326 (1%)
Query: 23  KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL 82
           K I H A     + + KI+V+G G VGMA A +IL +D  +E+ALVD   DKL+GEM+DL
Sbjct: 7   KLIGHLATSQEPRSYNKITVVGVGAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDL 66
Query: 83  QHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLV 142
           QH + FL   KI++  DY+V+AGS L ++TAGARQ  GE            FK IIP +V
Sbjct: 67  QHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIV 126
Query: 143 KYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDV 202
           K+SPDCI+L+V+NPVD+LTYVAWKLSGLP +R+IGSG NLDS+RFR+L+ + L V++   
Sbjct: 127 KHSPDCIILVVSNPVDVLTYVAWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSC 186
Query: 203 QAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK 262
             +++GEHGDS  ++WS ++V  + +       +   +K+  + +HK+VVDSAYEVI LK
Sbjct: 187 HGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNK---DKQDWKKLHKDVVDSAYEVIKLK 243
Query: 263 GYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVT 322
           GYTSWAIG S A+LA +I+++  ++HPVS + K FYGI   +VFLSLP  L   G+  + 
Sbjct: 244 GYTSWAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIK-DNVFLSLPCVLNDHGISNIV 302
Query: 323 NIHLNQEESHRLRNSAKTILEVQSQL 348
            + L   E  +L+ SA T+ ++Q  L
Sbjct: 303 KMKLKPNEEQQLQKSATTLWDIQKDL 328

>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 329

Iteration: 1
 Score =  322 bits (824), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 157/326 (48%), Positives = 220/326 (67%), Gaps = 4/326 (1%)
Query: 23  KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL 82
           K I H A     + + KI+V+G G VGMA A +IL +D  +E+ALVD   DKL+GEM+DL
Sbjct: 6   KLIGHLATSQEPRSYNKITVVGVGAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDL 65
Query: 83  QHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLV 142
           QH + FL   KI++  DY+V+AGS L ++TAGARQ  GE            FK IIP +V
Sbjct: 66  QHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIV 125
Query: 143 KYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDV 202
           K+SPDCI+L+V+NPVD+LTYVAWKLSGLP +R+IGSG NLDS+RFR+L+ + L V++   
Sbjct: 126 KHSPDCIILVVSNPVDVLTYVAWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSC 185
Query: 203 QAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK 262
             +++GEHGDS  ++WS ++V  + +       +   +K+  + +HK+VVDSAYEVI LK
Sbjct: 186 HGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNK---DKQDWKKLHKDVVDSAYEVIKLK 242
Query: 263 GYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVT 322
           GYTSWAIG S A+LA +I+++  ++HPVS + K FYGI   +VFLSLP  L   G+  + 
Sbjct: 243 GYTSWAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIK-DNVFLSLPCVLNDHGISNIV 301
Query: 323 NIHLNQEESHRLRNSAKTILEVQSQL 348
            + L   E  +L+ SA T+ ++Q  L
Sbjct: 302 KMKLKPNEEQQLQKSATTLWDIQKDL 327

>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus Carpio Length = 332

Iteration: 1
 Score =  320 bits (819), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 170/326 (52%), Positives = 222/326 (68%), Gaps = 1/326 (0%)
Query: 23  KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL 82
           K I H +   P     K++V+G G VGMA A +IL +D  +ELALVD   DKL+GE +DL
Sbjct: 6   KLITHVSKEEPAGPTNKVTVVGVGMVGMAAAISILLKDLTDELALVDVMEDKLKGEAMDL 65
Query: 83  QHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLV 142
           QH + FL   KI+A  DY+VTA S + +VTAGARQ  GE            FK IIP ++
Sbjct: 66  QHGSLFLKTHKIVADKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNII 125
Query: 143 KYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDV 202
           KYSP+CILL+V+NPVDILTYVAWKLSGLP NRVIGSGTNLDS+RFR L+ + L ++  + 
Sbjct: 126 KYSPNCILLVVSNPVDILTYVAWKLSGLPRNRVIGSGTNLDSARFRHLMGEKLGIHPSNC 185
Query: 203 QAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK 262
             +++GEHGDSSV +WS ++V GV +           +KE  +S+HK VVDSAYEVI LK
Sbjct: 186 HGWVIGEHGDSSVPVWSGVNVAGVFLQGLNPDMGTDKDKEDWKSVHKMVVDSAYEVIKLK 245
Query: 263 GYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVT 322
           GYTSWAIG SAA+L +SI+++ RK HPVS L KG +G++  +VFLS+P  LG  G+  V 
Sbjct: 246 GYTSWAIGMSAADLCQSILKNLRKCHPVSTLVKGMHGVN-EEVFLSVPCILGNSGLTDVV 304
Query: 323 NIHLNQEESHRLRNSAKTILEVQSQL 348
           ++ L  +E  +L  SA+T+  VQ  L
Sbjct: 305 HMTLKSDEEKQLVKSAETLWGVQKDL 330

>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari Length = 331

Iteration: 1
 Score =  317 bits (811), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 168/326 (51%), Positives = 223/326 (68%), Gaps = 2/326 (0%)
Query: 23  KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL 82
           K I+H     P    +K++V+G G VGMA A +IL +D  +ELA+VD   DKL+GE++DL
Sbjct: 6   KLISHVMKEEPVGSRSKVTVVGVGMVGMASAISILLKDLCDELAMVDVMEDKLKGEVMDL 65
Query: 83  QHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLV 142
           QH + FL +TKI+   DY+VTA S + +VTAGARQ  GE            FK IIP +V
Sbjct: 66  QHGSLFL-KTKIVGDKDYSVTANSKVVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIV 124
Query: 143 KYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDV 202
           KYSP+CIL++V+NPVDILTYVAWKLSG P +RVIGSGTNLDS+RFR L+ + L ++    
Sbjct: 125 KYSPNCILMVVSNPVDILTYVAWKLSGFPRHRVIGSGTNLDSARFRHLIGEKLHLHPSSC 184
Query: 203 QAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK 262
            A+IVGEHGDSSV +WS ++V GV +     +     + E  ++IHKEVVD AYEVI LK
Sbjct: 185 HAWIVGEHGDSSVPVWSGVNVAGVSLQGLNPQMGTEGDGENWKAIHKEVVDGAYEVIKLK 244
Query: 263 GYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVT 322
           GYTSWAIG S A+L  SII++  K+HPVS L +G +G+   +VFLS+P  LG  G+  V 
Sbjct: 245 GYTSWAIGMSVADLVESIIKNMHKVHPVSTLVQGMHGVK-DEVFLSVPCVLGNSGLTDVI 303
Query: 323 NIHLNQEESHRLRNSAKTILEVQSQL 348
           ++ L  EE  +L+ SA+T+  VQ +L
Sbjct: 304 HMTLKAEEEKQLQKSAETLWGVQKEL 329

>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3- Angstroms Resolution Structure Of Mouse Testicular Lactate Dehydrogenase C4 Length = 331

Iteration: 1
 Score =  311 bits (796), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 150/318 (47%), Positives = 208/318 (65%), Gaps = 1/318 (0%)
Query: 31  PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP 90
           P       KI+V+G G+VGMA A +IL +   +ELALVDA  DKLRGE LDLQH + FL 
Sbjct: 13  PEDKLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLS 72
Query: 91  RTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCIL 150
             KI+   DY V+A S L I+TAGAR ++G+             KAI+P +++ SPDC +
Sbjct: 73  TPKIVFGKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKI 132
Query: 151 LIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEH 210
           ++V NPVDILTYV WK+SG P  RVIGSG NLDS+RFR+L+ + L VN      +++GEH
Sbjct: 133 IVVTNPVDILTYVVWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVLGEH 192
Query: 211 GDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIG 270
           GDSSV +WS ++V GV + S          K+  +++HK+VV+  YEV+ +KGYTSWAIG
Sbjct: 193 GDSSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEVLDMKGYTSWAIG 252
Query: 271 YSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEE 330
            S  +LARSI+++ +++HPV+ L KGF+GI   +VFLS+P  LG  G+     +++  EE
Sbjct: 253 LSVTDLARSILKNLKRVHPVTTLVKGFHGIK-EEVFLSIPCVLGESGITDFVKVNMTAEE 311
Query: 331 SHRLRNSAKTILEVQSQL 348
              L+ SA T+  +Q  L
Sbjct: 312 EGLLKKSADTLWNMQKNL 329

>pdb|3LDH|A Chain A, A Comparison Of The Structures Of Apo Dogfish M4 Lactate Dehydrogenase And Its Ternary Complexes Length = 330

Iteration: 1
 Score =  252 bits (643), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/344 (40%), Positives = 198/344 (57%), Gaps = 40/344 (11%)
Query: 23  KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL 82
           K I H A     + + KI+V+G   VGMA A ++L +D  +E+ALVD   DKL+GEM+DL
Sbjct: 7   KLIGHLATSQEPRSYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDL 66
Query: 83  QHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLV 142
           +H + FL   KI++  DY+V+AGS L ++TAGARQ  GE            FK IIP +V
Sbjct: 67  EHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIV 126
Query: 143 KYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDV 202
           K+SPDC+  +            WKLSGLP +R+IGSG NLDS+RFR+L+ + L V++  V
Sbjct: 127 KHSPDCLKELHPELGTDKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCLV 186
Query: 203 QAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK 262
             +++G+HGDS  ++WS +                         +HK+VVDSAYEVI LK
Sbjct: 187 IGWVIGQHGDSVPSVWSGMWDA---------------------KLHKDVVDSAYEVIKLK 225
Query: 263 GYTSWAIGY-----------------SAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDV 305
           GYTSWAIG                  S A+LA++I++D  ++HPVS + K FYGI   +V
Sbjct: 226 GYTSWAIGLVVSNPVDVLTYVAWKGCSVADLAQTIMKDLCRVHPVSTMVKDFYGIK-DNV 284
Query: 306 FLSLPAQLGRG-GVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348
           FLSLP  L  G     +  + L  +E  +L+ SA T+ ++Q  L
Sbjct: 285 FLSLPCVLNNGISHCNIVKMKLKPDEEQQLQKSATTLWDIQKDL 328

>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial L-Lactate Dehydrogenase Length = 319

Iteration: 1
 Score =  244 bits (624), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 126/317 (39%), Positives = 191/317 (60%), Gaps = 3/317 (0%)
Query: 34  TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTK 93
           T + TK++VIG G VG  +A     +    E+ L D   +++  E+LD+QH ++F P   
Sbjct: 4   TVKPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVS 63
Query: 94  ILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIV 153
           I  S D  +   +D+ ++TAG RQ  G+             KAI+P LVK +P+ I +++
Sbjct: 64  IDGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLI 123
Query: 154 ANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDS 213
            NPVDI T+VA KL+GLP N++ GSGTNLDS+R RFL+A    VN ++V AYI GEHGDS
Sbjct: 124 TNPVDIATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDS 183
Query: 214 SVALWSSISVGGVPILSFLE-KQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS 272
            V LW S ++GGVP+  +         + +  E IH+EV ++AY++I+ KG T++AIG S
Sbjct: 184 EVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGKGATNYAIGMS 243
Query: 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
             ++  +++ D  +I PVS + K F+GI   D+ +S+P  L R GV    N  ++ +E  
Sbjct: 244 GVDIIEAVLHDTNRILPVSSMLKDFHGI--SDICMSVPTLLNRQGVNNTINTPVSDKELA 301
Query: 333 RLRNSAKTILEVQSQLG 349
            L+ SA+T+ E  +Q G
Sbjct: 302 ALKRSAETLKETAAQFG 318

>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis Complexed With Fbp And Nad+ Length = 326

Iteration: 1
 Score =  233 bits (595), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 120/313 (38%), Positives = 184/313 (58%), Gaps = 6/313 (1%)
Query: 34  TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTK 93
            K   K+++IG G VG + A  ++ Q   +EL ++D   +K  G+++DL H  AF P+  
Sbjct: 2   NKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPV 61
Query: 94  ILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIV 153
             +   Y     +D+  + AGA Q  GE            FK I+  ++    D I L+ 
Sbjct: 62  KTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 154 ANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDS 213
            NPVDILTY  WK SGLP  RVIGSGT LDS+RFRF+L+++     Q+V A+I+GEHGD+
Sbjct: 122 TNPVDILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGEHGDT 181
Query: 214 SVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSA 273
            + +WS  +VGGVP+   +EK   AY++E L+ I  +V ++AY +I  KG T + +  S 
Sbjct: 182 ELPVWSHANVGGVPVSELVEKND-AYKQEELDQIVDDVKNAAYHIIEKKGATYYGVAMSL 240
Query: 274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHR 333
           A + ++I+ ++  I  VS    G YG D  DV++ +PA + RGG+ G+T ++LN++E  +
Sbjct: 241 ARITKAILHNENSILTVSTYLDGQYGAD--DVYIGVPAVVNRGGIAGITELNLNEKEKEQ 298
Query: 334 LRNSA---KTILE 343
             +SA   K IL+
Sbjct: 299 FLHSAGVLKNILK 311

>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis With H171c Mutation Length = 326

Iteration: 1
 Score =  233 bits (593), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 120/313 (38%), Positives = 184/313 (58%), Gaps = 6/313 (1%)
Query: 34  TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTK 93
            K   K+++IG G VG + A  ++ Q   +EL ++D   +K  G+++DL H  AF P+  
Sbjct: 2   NKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPV 61
Query: 94  ILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIV 153
             +   Y     +D+  + AGA Q  GE            FK I+  ++    D I L+ 
Sbjct: 62  KTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 154 ANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDS 213
            NPVDILTY  WK SGLP  RVIGSGT LDS+RFRF+L+++     Q+V A+I+GEHGD+
Sbjct: 122 TNPVDILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEHGDT 181
Query: 214 SVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSA 273
            + +WS  +VGGVP+   +EK   AY++E L+ I  +V ++AY +I  KG T + +  S 
Sbjct: 182 ELPVWSHANVGGVPVSELVEKND-AYKQEELDQIVDDVKNAAYHIIEKKGATYYGVAMSL 240
Query: 274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHR 333
           A + ++I+ ++  I  VS    G YG D  DV++ +PA + RGG+ G+T ++LN++E  +
Sbjct: 241 ARITKAILHNENSILTVSTYLDGQYGAD--DVYIGVPAVVNRGGIAGITELNLNEKEKEQ 298
Query: 334 LRNSA---KTILE 343
             +SA   K IL+
Sbjct: 299 FLHSAGVLKNILK 311

>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r) Fro Staphylococcus Aureus Complexed With Nad And Pyruvate Length = 317

Iteration: 1
 Score =  224 bits (571), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 115/312 (36%), Positives = 184/312 (58%), Gaps = 4/312 (1%)
Query: 36  RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKIL 95
           +  K+ +IG G VG + A +++ Q  V+EL ++D   +K+RG+++DL+HA  + P T  +
Sbjct: 5   KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRV 64
Query: 96  ASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVAN 155
            + +Y+    +DL ++ AGARQ  GE            FK+I+  ++    D I L+  N
Sbjct: 65  KAGEYSDCHDADLVVICAGARQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATN 124
Query: 156 PVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSV 215
           PVDIL Y  WK SGLP  RVIGSGT LDS+RFR LL++  DV  + V A I+GEHGD+ +
Sbjct: 125 PVDILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEHGDTEL 184
Query: 216 ALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAAN 275
            +WS  ++ G P+ + LE++     K  +E I  +  D+AY++I  KG T + +    A 
Sbjct: 185 PVWSHANIAGQPLKTLLEQRPEG--KAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGLAR 242
Query: 276 LARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLR 335
           +  +I R++  +  VS L +G Y  +  DV++ +PA + R G+  V  I LN EE  +  
Sbjct: 243 ITEAIFRNEDAVLTVSALLEGEY--EEEDVYIGVPAVINRNGIRNVVEIPLNDEEQSKFA 300
Query: 336 NSAKTILEVQSQ 347
           +SAKT+ ++ ++
Sbjct: 301 HSAKTLKDIMAE 312

>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei Length = 326

Iteration: 1
 Score =  222 bits (566), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 116/310 (37%), Positives = 186/310 (60%), Gaps = 4/310 (1%)
Query: 35  KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKI 94
           K H K+ ++G G VG + A  ++ Q   +E+ +VD   DK +G+ +DL +A  F    KI
Sbjct: 7   KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKI 66
Query: 95  LASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVA 154
             S +Y+    +DL ++TAGA Q  GE             K+I+ P+V    + I L+ A
Sbjct: 67  Y-SAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA 125
Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
           NPVDILTY  WKLSG P NRV+GSGT+LD++RFR  +A+ ++V+A+ V AYI+GEHGD+ 
Sbjct: 126 NPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTE 185
Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAA 274
             +WS  ++GGV I  ++ K     +++ L  + ++V D+AYE+I LKG T + I  + A
Sbjct: 186 FPVWSHANIGGVTIAEWV-KAHPEIKEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALA 244
Query: 275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRL 334
            ++++I+ D+  + P+SV   G YG++  D+++  PA + R G+  +  I L   E   +
Sbjct: 245 RISKAILNDENAVLPLSVYMDGQYGLN--DIYIGTPAVINRNGIQNILEIPLTDHEEESM 302
Query: 335 RNSAKTILEV 344
           + SA  + +V
Sbjct: 303 QKSASQLKKV 312

>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Staphylococcus Aureus Length = 317

Iteration: 1
 Score =  221 bits (563), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 114/312 (36%), Positives = 183/312 (58%), Gaps = 4/312 (1%)
Query: 36  RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKIL 95
           +  K+ +IG G VG + A +++ Q  V+EL ++D   +K+RG+++DL+HA  + P T  +
Sbjct: 5   KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRV 64
Query: 96  ASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVAN 155
            + +Y+    +DL ++ AGA Q  GE            FK+I+  ++    D I L+  N
Sbjct: 65  KAGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATN 124
Query: 156 PVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSV 215
           PVDIL Y  WK SGLP  RVIGSGT LDS+RFR LL++  DV  + V A I+GEHGD+ +
Sbjct: 125 PVDILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEHGDTEL 184
Query: 216 ALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAAN 275
            +WS  ++ G P+ + LE++     K  +E I  +  D+AY++I  KG T + +    A 
Sbjct: 185 PVWSHANIAGQPLKTLLEQRPEG--KAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGLAR 242
Query: 276 LARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLR 335
           +  +I R++  +  VS L +G Y  +  DV++ +PA + R G+  V  I LN EE  +  
Sbjct: 243 ITEAIFRNEDAVLTVSALLEGEY--EEEDVYIGVPAVINRNGIRNVVEIPLNDEEQSKFA 300
Query: 336 NSAKTILEVQSQ 347
           +SAKT+ ++ ++
Sbjct: 301 HSAKTLKDIMAE 312

>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms Resolution Length = 325

Iteration: 1
 Score =  221 bits (562), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 116/310 (37%), Positives = 186/310 (60%), Gaps = 4/310 (1%)
Query: 35  KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKI 94
           K H K+ ++G G VG + A  ++ Q   +E+ +VD   DK +G+ +DL +A  F    KI
Sbjct: 6   KDHQKVILVGDGAVGSSYAFAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKI 65
Query: 95  LASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVA 154
             S +Y+    +DL ++TAGA +  GE             K+I+ P+V    + I L+ A
Sbjct: 66  Y-SAEYSDAKDADLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFLVAA 124
Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
           NPVDILTY  WKLSG P NRV+GSGT+LD++RFR  +A+ ++V+A+ V AYI+GEHGD+ 
Sbjct: 125 NPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTE 184
Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAA 274
             +WS  ++GGV I  ++ K     +++ L  + ++V D+AYE+I LKG T + I  + A
Sbjct: 185 FPVWSHANIGGVTIAEWV-KAHPEIKEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALA 243
Query: 275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRL 334
            ++++I+ D+  + P+SV   G YGI+  D+++  PA + R G+  +  I L   E   +
Sbjct: 244 RISKAILNDENAVLPLSVYMDGQYGIN--DLYIGTPAVINRNGIQNILEIPLTDHEEESM 301
Query: 335 RNSAKTILEV 344
           + SA  + +V
Sbjct: 302 QKSASQLKKV 311

>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326

Iteration: 1
 Score =  219 bits (558), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 115/310 (37%), Positives = 184/310 (59%), Gaps = 4/310 (1%)
Query: 35  KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKI 94
           K H K+ ++G G VG + A  ++ Q   +E+ +VD   DK +G+ +DL+ A  F    KI
Sbjct: 7   KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKI 66
Query: 95  LASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVA 154
             S +Y+    +DL ++TAGA Q  GE             K+I+ P+V    + I L+ A
Sbjct: 67  Y-SAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA 125
Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
           NPVDILTY  WKLSG P NRV+GSGT+LD++RFR  +A  ++V+A+ V AYI+GEHGD+ 
Sbjct: 126 NPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHAYIMGEHGDTE 185
Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAA 274
             +WS  ++GGV I  ++ K     +++ L  + ++V + AYE+I LKG T + I  + A
Sbjct: 186 FPVWSHANIGGVTIAEWV-KAHPEIKEDKLVKMFEDVRNKAYEIIKLKGATFYGIATALA 244
Query: 275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRL 334
            ++++I+ D+  + P+SV   G YG++  D+++  PA + R G+  +  I L   E   +
Sbjct: 245 RISKAILNDENAVLPLSVYMDGQYGLN--DIYIGTPAVINRNGIQNILEIPLTDHEEESM 302
Query: 335 RNSAKTILEV 344
           + SA  + +V
Sbjct: 303 QKSASQLKKV 312

>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate Dehydrogenase From Bacillus Stearothermophilus At 2.5 Angstroms Resolution Length = 316

Iteration: 1
 Score =  214 bits (544), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 114/309 (36%), Positives = 171/309 (55%), Gaps = 3/309 (0%)
Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
           ++ VIG G VG +    ++ Q   +E+ L+DA   K  G+ +D  H   F P+   +   
Sbjct: 8   RVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHG 67
Query: 99  DYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVD 158
           DY     +DL ++ AGA Q  GE            F++I+  ++      + L+  NPVD
Sbjct: 68  DYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD 127
Query: 159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
           ILTY  WK SGLP  RVIGSGT LD++RFRFLL ++  V  Q+V AYI+GEHGD+ + +W
Sbjct: 128 ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVW 187
Query: 219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLAR 278
           S   +G +PI   +E +    +K+ LE I   V D+AY++I  KG T + I    A + R
Sbjct: 188 SQAYIGVMPIRKLVESKGEEAQKD-LERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTR 246
Query: 279 SIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA 338
           +I+ ++  I  VS    G YG    DV++ +PA + R G+  V  I LN +E +R  +SA
Sbjct: 247 AILHNENAILTVSAYLDGLYG--ERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSA 304
Query: 339 KTILEVQSQ 347
            T+  V ++
Sbjct: 305 ATLKSVLAR 313

>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus Stearothermophilus Lactate Dehydrogenase Length = 317

Iteration: 1
 Score =  214 bits (544), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 114/309 (36%), Positives = 171/309 (55%), Gaps = 3/309 (0%)
Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
           ++ VIG G VG +    ++ Q   +E+ L+DA   K  G+ +D  H   F P+   +   
Sbjct: 8   RVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHG 67
Query: 99  DYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVD 158
           DY     +DL ++ AGA Q  GE            F++I+  ++      + L+  NPVD
Sbjct: 68  DYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD 127
Query: 159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
           ILTY  WK SGLP  RVIGSGT LD++RFRFLL ++  V  Q+V AYI+GEHGD+ + +W
Sbjct: 128 ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVW 187
Query: 219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLAR 278
           S   +G +PI   +E +    +K+ LE I   V D+AY++I  KG T + I    A + R
Sbjct: 188 SQAYIGVMPIRKLVESKGEEAQKD-LERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTR 246
Query: 279 SIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA 338
           +I+ ++  I  VS    G YG    DV++ +PA + R G+  V  I LN +E +R  +SA
Sbjct: 247 AILHNENAILTVSAYLDGLYG--ERDVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSA 304
Query: 339 KTILEVQSQ 347
            T+  V ++
Sbjct: 305 ATLKSVLAR 313

>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate Dehydrogenase From Lactobacillus Pentosus At 2.3 Angstrom Resolution Length = 318

Iteration: 1
 Score =  210 bits (534), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 113/309 (36%), Positives = 177/309 (57%), Gaps = 5/309 (1%)
Query: 36  RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKIL 95
            H K+ ++G G VG + A  +  Q   EE  +VD   D+ +G+ LDL+ A AF    KI 
Sbjct: 4   NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIY 63
Query: 96  ASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVAN 155
            S +Y+    +DL ++TAGA Q  GE              +I+ P+V    D I L+ AN
Sbjct: 64  -SGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN 122
Query: 156 PVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSV 215
           PVDILTY  WK SG P  RVIGSGT+LDSSR R  L    +V+ + V AYI+GEHGDS  
Sbjct: 123 PVDILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGDSEF 182
Query: 216 ALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAAN 275
           A +S+ ++G  P+    ++Q ++   + L  +   V + AY++I+LKG T + IG +   
Sbjct: 183 AAYSTATIGTRPVRDVAKEQGVS--DDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMR 240
Query: 276 LARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLR 335
           ++++I+RD+  + PV     G YG++  D+++  PA +G  G+  +    L+ +E  +++
Sbjct: 241 ISKAILRDENAVLPVGAYMDGQYGLN--DIYIGTPAIIGGTGLKQIIESPLSADELKKMQ 298
Query: 336 NSAKTILEV 344
           +SA T+ +V
Sbjct: 299 DSAATLKKV 307

>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate Dehydrogenase Length = 310

Iteration: 1
 Score =  204 bits (519), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 119/312 (38%), Positives = 169/312 (54%), Gaps = 3/312 (0%)
Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
           K+ ++G+G VG A A  +       E+ LVD      +    D+ HA  F     + A  
Sbjct: 2   KVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVRAG- 60
Query: 99  DYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVD 158
            Y    G+   ++ AG  Q  GE            F  ++P +++ +P+ +LL+  NPVD
Sbjct: 61  SYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD 120
Query: 159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
           ++T VA++LSGLP  RV+GSGT LD++RFR LLA++L V  Q V AY++GEHGDS V +W
Sbjct: 121 VMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLAR 278
           SS  VGGVP+L F E +  A   E    I + V  +AY +I  KG T + IG   A L R
Sbjct: 181 SSAQVGGVPLLEFAEARGAALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 279 SIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA 338
           +I+ D++ ++ VS       G+   +V LSLP  LG GGV G     L+ EE   LR SA
Sbjct: 241 AILTDEKGVYTVSAFTPEVEGVL--EVSLSLPRILGAGGVEGTVYPSLSPEEREALRRSA 298
Query: 339 KTILEVQSQLGI 350
           + + E    LG 
Sbjct: 299 EILKEAAFALGF 310

>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus Thermophilus Hb8 (Apo Form) Length = 310

Iteration: 1
 Score =  203 bits (517), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 119/312 (38%), Positives = 169/312 (54%), Gaps = 3/312 (0%)
Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
           K+ ++G+G VG A A  +       E+ LVD      +    D+ HA  F     + A  
Sbjct: 2   KVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVRAG- 60
Query: 99  DYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVD 158
            Y    G+   ++ AG  Q  GE            F  ++P +++ +P+ +LL+  NPVD
Sbjct: 61  SYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD 120
Query: 159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
           ++T VA++LSGLP  RV+GSGT LD++RFR LLA++L V  Q V AY++GEHGDS V +W
Sbjct: 121 VMTQVAYRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLAR 278
           SS  VGGVP+L F E +  A   E    I + V  +AY +I  KG T + IG   A L R
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 279 SIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA 338
           +I+ D++ ++ VS       G+   +V LSLP  LG GGV G     L+ EE   LR SA
Sbjct: 241 AILTDEKGVYTVSAFTPEVEGVL--EVSLSLPRILGAGGVEGTVYPSLSPEEREALRRSA 298
Query: 339 KTILEVQSQLGI 350
           + + E    LG 
Sbjct: 299 EILKEAAFALGF 310

>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate Dehydrogenase, Complex With Amp Length = 310

Iteration: 1
 Score =  202 bits (513), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 119/312 (38%), Positives = 168/312 (53%), Gaps = 3/312 (0%)
Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
           K+ ++G+G VG A A  +       E+ LVD      +    D+ HA  F     + A  
Sbjct: 2   KVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAG- 60
Query: 99  DYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVD 158
            Y    G+   ++ AG  Q  GE            F  ++P +++ +P+ +LL+  NPVD
Sbjct: 61  SYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD 120
Query: 159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
           ++T VA+ LSGLP  RV+GSGT LD++RFR LLA++L V  Q V AY++GEHGDS V +W
Sbjct: 121 VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLAR 278
           SS  VGGVP+L F E +  A   E    I + V  +AY +I  KG T + IG   A L R
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240
Query: 279 SIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA 338
           +I+ D++ ++ VS       G+   +V LSLP  LG GGV G     L+ EE   LR SA
Sbjct: 241 AILTDEKGVYTVSAFTPEVAGVL--EVSLSLPRILGAGGVAGTVYPSLSPEERAALRRSA 298
Query: 339 KTILEVQSQLGI 350
           + + E    LG 
Sbjct: 299 EILKEAAFALGF 310

>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318

Iteration: 1
 Score =  196 bits (498), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 109/314 (34%), Positives = 176/314 (56%), Gaps = 3/314 (0%)
Query: 35  KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKI 94
           K  +K+++IG G VG + A T+  +    EL L+D   +K  GE +D+ H   F+ +  +
Sbjct: 5   KSRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSL 64
Query: 95  LASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVA 154
            A  DY+     D+ +VTAGA +  GE             K +   ++KY    ++L+V+
Sbjct: 65  YAG-DYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 123
Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
           NPVDI+TY+  K SGLP  +VIGSGT LDS RFR+LL++ L V+ ++V  YI+GEHGDS 
Sbjct: 124 NPVDIITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQ 183
Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAA 274
           + LWS   + G  I  +++  +  + +E  + I ++V  +   +I  KG T + I  S  
Sbjct: 184 LPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSIN 243
Query: 275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRL 334
            +  +++++Q  I  V  +  G YGI+  DV +SLP+ +   GV  V   +L  EE   L
Sbjct: 244 TIVETLLKNQNTIRTVGTVINGMYGIE--DVAISLPSIVNSEGVQEVLQFNLTPEEEEAL 301
Query: 335 RNSAKTILEVQSQL 348
           R SA+ + +V +++
Sbjct: 302 RFSAEQVKKVLNEV 315

>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh) Length = 319

Iteration: 1
 Score =  193 bits (490), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 104/280 (37%), Positives = 158/280 (56%), Gaps = 4/280 (1%)
Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
           KI ++G G VG + A  +L + F  E+ L+D    +  G+ LDL H   F  R  I A  
Sbjct: 2   KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG- 60
Query: 99  DYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVD 158
           DYA   GSD+ IV AG  Q  GE             K I   + KY+PD I+++V NPVD
Sbjct: 61  DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120
Query: 159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
           +LTY   K SG+   +V GSGT LD++R R L+A H   + + V  Y++GEHGDS V +W
Sbjct: 121 VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVW 180
Query: 219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLAR 278
           S   +GG+P+ +  +  Q   + + LE+  ++   +AYE+I  KG T +AI  + A++  
Sbjct: 181 SGAMIGGIPLQNMCQVCQ-KCDSKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVE 239
Query: 279 SIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGV 318
           SI  D++++  +SV  + + G+   D+ +S+P  LG+ GV
Sbjct: 240 SIFFDEKRVLTLSVYLEDYLGVK--DLCISVPVTLGKHGV 277

>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus Length = 310

Iteration: 1
 Score =  189 bits (481), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 112/287 (39%), Positives = 156/287 (54%), Gaps = 3/287 (1%)
Query: 64  ELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXX 123
           E+ LVD      +    D+ HA  F     + A   Y    G+   ++ AG  Q  GE  
Sbjct: 27  EVVLVDLDRKLAQAHAEDILHATPFAHPVWVRAG-SYGDLEGARAVVLAAGVAQRPGETR 85
Query: 124 XXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLD 183
                     F  ++P +++ +P+ +LL+  NPVD+ T VA++LSGLP  RV+GSGT LD
Sbjct: 86  LQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVXTQVAYRLSGLPPGRVVGSGTILD 145
Query: 184 SSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKET 243
           ++RFR LLA++L V  Q V AY++GEHGDS V +WSS  VGGVP+L F E +  A   E 
Sbjct: 146 TARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVWSSAQVGGVPLLEFAEARGRALSPED 205
Query: 244 LESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGG 303
              I + V  +AY +I  KG T + IG   A L R+I+ D++ ++ VS       G+   
Sbjct: 206 RARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVRAILTDEKGVYTVSAFTPEVEGVL-- 263
Query: 304 DVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI 350
           +V LSLP  LG GGV G     L+ EE   LR SA+ + E    LG 
Sbjct: 264 EVSLSLPRILGAGGVEGTVYPSLSPEEREALRRSAEILKEAAFALGF 310

>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314

Iteration: 1
 Score =  189 bits (479), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 105/302 (34%), Positives = 175/302 (57%), Gaps = 11/302 (3%)
Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKILAS 97
           K++VIG GNVG  +A+ +  QD  +E+ +VD K    +G+ LD++ ++      T++  +
Sbjct: 2   KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGT 61
Query: 98  VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPV 157
            DY  T  SD+CI+TAG  +  G                +    V+ SPD  +++VANP+
Sbjct: 62  NDYGPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPL 121
Query: 158 DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVAL 217
           D++TYVA++ SG P+NRV+G    LD+ RFR  +A+ LDV+ +DVQA ++G HGD+ V L
Sbjct: 122 DVMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGHGDTMVPL 181
Query: 218 WSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYT-SWAIGYSAANL 276
               +VGG+P+   ++  +I       E I +    +  E++ L G +  +A G +AA +
Sbjct: 182 PRYTTVGGIPVPQLIDDARI-------EEIVERTKGAGGEIVDLMGTSAWYAPGAAAAEM 234
Query: 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336
             +I++D ++I P +    G YG+D  D+F+ +P +LG GGV  V  + L+ +E  +L+ 
Sbjct: 235 TEAILKDNKRILPCAAYCDGEYGLD--DLFIGVPVKLGAGGVEEVIEVDLDADEKAQLKT 292
Query: 337 SA 338
           SA
Sbjct: 293 SA 294

>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score =  172 bits (436), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/306 (35%), Positives = 164/306 (53%), Gaps = 8/306 (2%)
Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILAS 97
           KI+VIG GNVG   A  I  +    EL L+D      +G+ LD+       L  TKI  S
Sbjct: 2   KITVIGAGNVGATTAFRIADKKLARELVLLDVVEGIPQGKGLDMYETGPVGLFDTKITGS 61
Query: 98  VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPV 157
            DYA TA SD+ I+TAG  +  G              K +   ++K+S + I+++V+NP+
Sbjct: 62  NDYADTADSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPL 121
Query: 158 DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVAL 217
           DI+T+VAW  SGLP  RVIG    LD++RFR  +A  L V+ QD+ A ++G HGD+ V +
Sbjct: 122 DIMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPV 181
Query: 218 WSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLA 277
               +V G+PI   L  + I    E   +   E+V+   +     G   +A   S   + 
Sbjct: 182 VKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHLKQ-----GSAFYAPASSVVEMV 236
Query: 278 RSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNS 337
            SI+ D++++ P +V  +G YGID    F+ +P +LGR GV  +  I+L+Q +   L+ S
Sbjct: 237 ESIVLDRKRVLPCAVGLEGQYGID--KTFVGVPVKLGRNGVEQIYEINLDQADLDLLQKS 294
Query: 338 AKTILE 343
           AK + E
Sbjct: 295 AKIVDE 300

>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score =  172 bits (436), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 107/306 (34%), Positives = 165/306 (53%), Gaps = 8/306 (2%)
Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILAS 97
           KI+VIG GNVG   A  +  +    EL L+D      +G+ LD+  +    L  TK+  S
Sbjct: 2   KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS 61
Query: 98  VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPV 157
            DYA TA SD+ I+TAG  +  G              K +   ++K+S + I+++V+NP+
Sbjct: 62  NDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPL 121
Query: 158 DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVAL 217
           DI+T+VAW  SGLP  RVIG    LD++RFR  +A  L V+ QD+ A ++G HGD+ V +
Sbjct: 122 DIMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPV 181
Query: 218 WSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLA 277
               +V G+PI   L  + I    E   +   E+V+   +     G   +A   S   + 
Sbjct: 182 VKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHLKQ-----GSAFYAPASSVVEMV 236
Query: 278 RSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNS 337
            SI+ D++++ P +V  +G YGID    F+ +P +LGR GV  +  I+L+Q +   L+ S
Sbjct: 237 ESIVLDRKRVLPCAVGLEGQYGID--KTFVGVPVKLGRNGVEQIYEINLDQADLDLLQKS 294
Query: 338 AKTILE 343
           AK + E
Sbjct: 295 AKIVDE 300

>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Deinococcus Radiodurans (Apo Form) Length = 304

Iteration: 1
 Score =  171 bits (433), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 100/287 (34%), Positives = 156/287 (54%), Gaps = 9/287 (3%)
Query: 64  ELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXX 123
           EL LVD   D+ + E  D+ HAA     T++     ++  A + + I+TAGA Q  GE  
Sbjct: 27  ELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHG-GHSELADAQVVILTAGANQKPGESR 85
Query: 124 XXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLD 183
                     F+ ++P + + +PD +LL+ +NPVD+LT +A +L+  P   VIGSGT LD
Sbjct: 86  LDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLA--PGQPVIGSGTVLD 143
Query: 184 SSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKET 243
           S+RFR L+A H  V+      Y++GEHGDS V  WSS  V G+P+  F++ Q + + ++ 
Sbjct: 144 SARFRHLMAQHAGVDGTHAHGYVLGEHGDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQV 203
Query: 244 LESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGG 303
              I +   ++A  +I  K  T + IG + A +  +++RD+R +  VS      YG+   
Sbjct: 204 RAKIDEGTRNAAASIIEGKRATYYGIGAALARITEAVLRDRRAVLTVSAPTP-EYGVS-- 260
Query: 304 DVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI 350
              LSLP  +GR GVL   +  L  +E  +L  SA  +   + QLG+
Sbjct: 261 ---LSLPRVVGRQGVLSTLHPKLTGDEQQKLEQSAGVLRGFKQQLGL 304

>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score =  169 bits (427), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/306 (33%), Positives = 166/306 (54%), Gaps = 8/306 (2%)
Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILAS 97
           KI+VIG GNVG   A  +  +    EL L+D      +G+ LD+  +    L  TK+  S
Sbjct: 2   KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS 61
Query: 98  VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPV 157
            DYA TA SD+ ++TAG  +  G              + +   ++++S + I+++V+NP+
Sbjct: 62  NDYADTANSDIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPIIVVVSNPL 121
Query: 158 DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVAL 217
           DI+T+VAW+ SGLP  RVIG    LDS+RFR  +A  L V+ QDV A ++G HGD+ V +
Sbjct: 122 DIMTHVAWQKSGLPKERVIGMAGVLDSARFRSFIAMELGVSMQDVTACVLGGHGDAMVPV 181
Query: 218 WSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLA 277
               +V G+P+   +  ++IA   E   +   E+V+   +     G   ++   S   + 
Sbjct: 182 VKYTTVAGIPVADLISAERIAELVERTRTGGAEIVNHLKQ-----GSAFYSPATSVVEMV 236
Query: 278 RSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNS 337
            SI+ D++++   +V   G YGIDG   F+ +P +LG+ GV  +  I L+Q +   L+ S
Sbjct: 237 ESIVLDRKRVLTCAVSLDGQYGIDG--TFVGVPVKLGKNGVEHIYEIKLDQSDLDLLQKS 294
Query: 338 AKTILE 343
           AK + E
Sbjct: 295 AKIVDE 300

>pdb|2I6T|A Chain A, Orthorhombic Structure Of The Ldh Domain Of Human Ubiquitin- Conjugating Enzyme E2-Like Isoform A Length = 303

Iteration: 1
 Score =  169 bits (427), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 104/317 (32%), Positives = 172/317 (54%), Gaps = 26/317 (8%)
Query: 35  KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKI 94
           K   KI+V+G G +G+A    I  +   + L L+D  ++  +G  +DL+     LP  +I
Sbjct: 12  KTVNKITVVGGGELGIACTLAISAKGIADRLVLLDL-SEGTKGATMDLE--IFNLPNVEI 68
Query: 95  LASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVA 154
             S D + +A S + I T  +   + +            F+A++P L  YS   +LL+ +
Sbjct: 69  --SKDLSASAHSKVVIFTVNSLG-SSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVAS 125
Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
            PV+I+TYV WKLS  P+NRVIG G NLDS R ++++ + L       + +++GE G+  
Sbjct: 126 QPVEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQGEDK 185
Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAA 274
           V  WS    G   ++S   + Q++              + A E++ +KG  SW++G S A
Sbjct: 186 VLTWS----GQEEVVSHTSQVQLS--------------NRAMELLRVKGQRSWSVGLSVA 227
Query: 275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEE-SHR 333
           ++  SI+ +++K+H VS LAKG+Y I+  +VFLSLP  LG  GV  V    L ++  + +
Sbjct: 228 DMVDSIVNNKKKVHSVSALAKGYYDIN-SEVFLSLPCILGTNGVSEVIKTTLKEDTVTEK 286
Query: 334 LRNSAKTILEVQSQLGI 350
           L++SA +I  +Q QL +
Sbjct: 287 LQSSASSIHSLQQQLKL 303

>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From Archaeoglobus Fulgidus In Complex With Nadh Length = 294

Iteration: 1
 Score =  163 bits (413), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 108/314 (34%), Positives = 168/314 (53%), Gaps = 25/314 (7%)
Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR-TKILAS 97
           K+  +G G VG   A T L    V+E+ALVD   D   GE +DL HAAA + +  KI+  
Sbjct: 2   KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG 61
Query: 98  VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPV 157
            DY++  GS++ +VTAG  +  G              K I   +V+ +P+  +L+V NP+
Sbjct: 62  ADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPM 121
Query: 158 DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDV-QAYIVGEHGDSSVA 216
           D++TY+ WK SG P N V G G  LDS R +  L    +  A+++ +A+I+GEHGDS   
Sbjct: 122 DVMTYIMWKESGKPRNEVFGMGNQLDSQRLKERL---YNAGARNIRRAWIIGEHGDS--- 175
Query: 217 LWSSISVGGVPILSFLEKQQIAYEKET-LESIHKEVVDSAYEVISLKGYTSWAIGYSAAN 275
                         F+ K    ++ E   E++  +V   A EVI  KG T +    +   
Sbjct: 176 -------------MFVAKSLADFDGEVDWEAVENDVRFVAAEVIKRKGATIFGPAVAIYR 222
Query: 276 LARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLR 335
           + ++++ D  +I P S++ +G YGI+  +V + +PA+LG+ G   V +I L+ EE  +LR
Sbjct: 223 MVKAVVEDTGEIIPTSMILQGEYGIE--NVAVGVPAKLGKNGA-EVADIKLSDEEIEKLR 279
Query: 336 NSAKTILEVQSQLG 349
           NSAK + E   +LG
Sbjct: 280 NSAKILRERLEELG 293

>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form Length = 328

Iteration: 1
 Score =  157 bits (397), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 164/321 (51%), Gaps = 13/321 (4%)
Query: 36  RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKI 94
           R  KI++IG+G +G  +    + ++  + + L D       G+ LD   A +       +
Sbjct: 7   RRKKIAMIGSGMIGGTMGYLCVLRELAD-VVLFDVVTGMPEGKALDDSQATSIADTNVSV 65
Query: 95  LASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLV-----KYSPDCI 149
            ++  Y   AGSD+ I+TAG  ++ G+            F A I   V     KY P   
Sbjct: 66  TSANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAF 125
Query: 150 LLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGE 209
           +++V NP+D +     + SGLP N V G    LDS+RFR  +AD L+++ +D+QA ++G 
Sbjct: 126 VIVVTNPLDCMVKCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATVIGT 185
Query: 210 HGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTS--W 267
           HGD  + L   ++V G P+  F++K ++   K  L  I +    +  E++ L G  S  +
Sbjct: 186 HGDHMLPLARYVTVNGFPLREFIKKGKMTEAK--LAEIVERTKKAGGEIVRLLGQGSAYY 243
Query: 268 AIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLN 327
           A   SA  +A++ ++D++++ P SV  +G YG+   D+F+ LPA +G GG+  V  + L 
Sbjct: 244 APALSAITMAQAFLKDEKRVLPCSVYCQGEYGLH--DMFIGLPAVIGGGGIEQVIELELT 301
Query: 328 QEESHRLRNSAKTILEVQSQL 348
            EE    R S   ++E+   L
Sbjct: 302 HEEQECFRKSVDDVVELNKSL 322

>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With Nad And Oxq Length = 326

Iteration: 1
 Score =  157 bits (396), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 164/321 (51%), Gaps = 13/321 (4%)
Query: 36  RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKI 94
           R  KI++IG+G +G  +    + ++  + + L D       G+ LD   A +       +
Sbjct: 7   RRKKIAMIGSGMIGGTMGYLCVLRELAD-VVLFDVVTGMPEGKALDDSQATSIADTNVSV 65
Query: 95  LASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLV-----KYSPDCI 149
            ++  Y   AGSD+ I+TAG  ++ G+            F A I   V     KY P   
Sbjct: 66  TSANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAF 125
Query: 150 LLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGE 209
           +++V NP+D +     + SGLP N V G    LDS+RFR  +AD L+++ +D+QA ++G 
Sbjct: 126 VIVVTNPLDCMVKCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATVIGT 185
Query: 210 HGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTS--W 267
           HGD  + L   ++V G P+  F++K ++   K  L  I +    +  E++ L G  S  +
Sbjct: 186 HGDHMLPLARYVTVNGFPLREFIKKGKMTEAK--LAEIVERTKKAGGEIVRLLGQGSAYY 243
Query: 268 AIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLN 327
           A   SA  +A++ ++D++++ P SV  +G YG+   D+F+ LPA +G GG+  V  + L 
Sbjct: 244 APALSAITMAQAFLKDEKRVLPCSVYCQGEYGLH--DMFIGLPAVIGGGGIEQVIELELT 301
Query: 328 QEESHRLRNSAKTILEVQSQL 348
            EE    R S   ++E+   L
Sbjct: 302 HEEQECFRKSVDDVVELNKSL 322

>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate Dehydrogenase In Closed Conformation Length = 315

Iteration: 1
 Score =  150 bits (378), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 162/320 (50%), Gaps = 15/320 (4%)
Query: 34  TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK--ADKLRGEMLDLQHAAAFLP- 90
           T +  K+SVIG G  G A    +L Q  + ++ LVD     +  +G+ LD+  A+     
Sbjct: 5   TIKRKKVSVIGAGFTG-ATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGF 63
Query: 91  RTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCIL 150
              I+ + DYA TA SD+ ++TAG  +  G              K+I   + K+SP+ I+
Sbjct: 64  DANIIGTSDYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAII 123
Query: 151 LIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEH 210
           +++ NPVD +TY  +K +G P  RVIG    LD++RFR  +A  L+++ +D+  +++G H
Sbjct: 124 VVLTNPVDAMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLGGH 183
Query: 211 GDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTS--WA 268
           GD  V L      GG+P+ + +        KE LE+I +       E++ L G  S  +A
Sbjct: 184 GDDMVPLVRYSYAGGIPLETLI-------PKERLEAIVERTRKGGGEIVGLLGNGSAYYA 236
Query: 269 IGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQ 328
              S   +  +I++DQR++ P     +G YG    D++L +P  LG  G+  +  + L  
Sbjct: 237 PAASLVEMTEAILKDQRRVLPAIAYLEGEYGYS--DLYLGVPVILGGNGIEKIIELELLA 294
Query: 329 EESHRLRNSAKTILEVQSQL 348
           +E   L  S +++  V   L
Sbjct: 295 DEKEALDRSVESVRNVMKVL 314

>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum Pernix Length = 308

Iteration: 1
 Score =  147 bits (372), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 156/304 (51%), Gaps = 12/304 (3%)
Query: 40  ISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKILASV 98
           I+++G G VGMA A  ++ + + ++L L+     K +GE LDL HAAA L    +I  S 
Sbjct: 2   ITILGAGKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSN 60
Query: 99  DYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVD 158
            Y    GSD+ +VTAG  +  G                +   +  Y+ D I++I  NPVD
Sbjct: 61  SYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVD 120
Query: 159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
            +TYV +K +G P  RVIG    LDS+R  + ++  L V+ + V A ++G HG     + 
Sbjct: 121 AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMHGQKMFPVP 180
Query: 219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTS-WAIGYSAANLA 277
              SVGGVP+   + K++I       E +  E V++  ++  L+GY+S +          
Sbjct: 181 RLSSVGGVPLEHLMSKEEI-------EEVVSETVNAGAKITELRGYSSNYGPAAGLVLTV 233
Query: 278 RSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNS 337
            +I RD ++I+P S+  +G YG +  D+   +PA +G+ G+  +  + L ++E  +   +
Sbjct: 234 EAIKRDSKRIYPYSLYLQGEYGYN--DIVAEVPAVIGKSGIERIIELPLTEDEKRKFDEA 291
Query: 338 AKTI 341
            + +
Sbjct: 292 VQAV 295

>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score =  144 bits (364), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 163/308 (52%), Gaps = 13/308 (4%)
Query: 37  HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKIL 95
             KIS+IG G VG   A  +  ++   ++ L+D      +G+ LDL  A+       ++ 
Sbjct: 2   RKKISIIGAGFVGSTTAHWLAAKEL-GDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVT 60
Query: 96  ASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVAN 155
            + +YA TA SD+ +VT+GA +  G              +A I      SP+ ++++V N
Sbjct: 61  GTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120
Query: 156 PVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSV 215
           P+D +TY+A ++SG P  RVIG    LD++R+R  +A    V+ QDVQA ++G HGD  V
Sbjct: 121 PLDAMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGHGDEMV 180
Query: 216 ALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYSA 273
            L    ++ G+P+  F+   ++A   + +E   K       E+++L   G   +A   + 
Sbjct: 181 PLPRFSTISGIPVSEFIAPDRLA---QIVERTRK----GGGEIVNLLKTGSAYYAPAAAT 233
Query: 274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHR 333
           A +  ++++D++++ PV+    G YG++  D++  +P  LG GGV  +  + LN+EE   
Sbjct: 234 AQMVEAVLKDKKRVMPVAAYLTGQYGLN--DIYFGVPVILGAGGVEKILELPLNEEEMAL 291
Query: 334 LRNSAKTI 341
           L  SAK +
Sbjct: 292 LNASAKAV 299

>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor (B- Nicotinamide Adenine Dinucleotide) Length = 321

Iteration: 1
 Score =  144 bits (362), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 161/317 (50%), Gaps = 16/317 (5%)
Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRT-KILAS 97
           KI+VIG+G +G  IA  I+ +D + ++ L D      +G+ LD+ H+      T K++ +
Sbjct: 6   KIAVIGSGQIGGNIAY-IVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGT 64
Query: 98  VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPV 157
            DYA  +GSD+ I+TA       +              ++   + KY P+  ++ + NP+
Sbjct: 65  NDYADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPL 124
Query: 158 DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVAL 217
           D++     K+SGLP N+V G    LDSSRFR  +A H  VNA DV A ++G HGD  V  
Sbjct: 125 DVMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGHGDGMVPA 184
Query: 218 WSSISVGGVPILSFLEKQQIAYEKETLESIH-----KEVVDSAYEVISLK-GYTSWAIGY 271
            SS+SVGGVP+ SF+++  I  E+      H     KEV D      +LK G   +A   
Sbjct: 185 TSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVAD------NLKTGTAYFAPAA 238
Query: 272 SAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEES 331
           +A  +A + ++D++ + P S      YG+ G  +++ +P  +G+ GV  +  + L   E 
Sbjct: 239 AAVKMAEAYLKDKKAVVPCSAFCSNHYGVKG--IYMGVPTIIGKNGVEDILELDLTPLEQ 296
Query: 332 HRLRNSAKTILEVQSQL 348
             L  S   +  +   L
Sbjct: 297 KLLGESINEVNTISKVL 313

>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor Analog (3-Acetylpyridine Adenine Dinucleotide). Length = 317

Iteration: 1
 Score =  143 bits (361), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 159/310 (51%), Gaps = 16/310 (5%)
Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRT-KILAS 97
           KI+VIG+G +G  IA  I+ +D + ++ L D      +G+ LD+ H+      T K++ +
Sbjct: 6   KIAVIGSGQIGGNIAY-IVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGT 64
Query: 98  VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPV 157
            DYA  +GSD+ I+TA       +              ++   + KY P+  ++ + NP+
Sbjct: 65  DDYADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPL 124
Query: 158 DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVAL 217
           D++     K+SGLP N+V G    LDSSRFR  +A H  VNA DV A ++G HGD  V  
Sbjct: 125 DVMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGHGDGMVPA 184
Query: 218 WSSISVGGVPILSFLEKQQIAYEKETLESIH-----KEVVDSAYEVISLK-GYTSWAIGY 271
            SS+SVGGVP+ SF+++  I  E+      H     KEV D      +LK G   +A   
Sbjct: 185 TSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVAD------NLKTGTAYFAPAA 238
Query: 272 SAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEES 331
           +A  +A + ++D++ + P S      YG+ G  +++ +P  +G+ GV  +  + L   E 
Sbjct: 239 AAVKMAEAYLKDKKAVVPCSAFCSNHYGVKG--IYMGVPTIIGKNGVEDILELDLTPLEQ 296
Query: 332 HRLRNSAKTI 341
             L  S   +
Sbjct: 297 KLLGESINEV 306

>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 163/308 (52%), Gaps = 13/308 (4%)
Query: 37  HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKIL 95
             KIS+IG G VG   A  +  ++   ++ L+D      +G+ LDL  A+       ++ 
Sbjct: 2   RKKISIIGAGFVGSTTAHWLAAKEL-GDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVT 60
Query: 96  ASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVAN 155
            + +YA TA SD+ +VT+GA +  G              +A I      SP+ ++++V N
Sbjct: 61  GTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120
Query: 156 PVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSV 215
           P+D +TY+A ++SG P  RVIG    LD++R+R  +A    V+ +DVQA ++G HGD  V
Sbjct: 121 PLDAMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMV 180
Query: 216 ALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYSA 273
            L    ++ G+P+  F+   ++A   + +E   K       E+++L   G   +A   + 
Sbjct: 181 PLPRFSTISGIPVSEFIAPDRLA---QIVERTRK----GGGEIVNLLKTGSAYYAPAAAT 233
Query: 274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHR 333
           A +  ++++D++++ PV+    G YG++  D++  +P  LG GGV  +  + LN+EE   
Sbjct: 234 AQMVEAVLKDKKRVMPVAAYLTGQYGLN--DIYFGVPVILGAGGVEKILELPLNEEEMAL 291
Query: 334 LRNSAKTI 341
           L  SAK +
Sbjct: 292 LNASAKAV 299

>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 160/306 (52%), Gaps = 9/306 (2%)
Query: 37  HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKIL 95
             KIS+IG G VG   A  +  ++   ++ L+D      +G+ LDL  A+       ++ 
Sbjct: 2   RKKISIIGAGFVGSTTAHWLAAKEL-GDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVT 60
Query: 96  ASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVAN 155
            + +YA TA SD+ +VT+GA +  G              +A I      SP+ ++++V N
Sbjct: 61  GTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120
Query: 156 PVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSV 215
           P+D +TY+A ++SG P  RVIG    LD++R+R  +A    V+ +DVQA ++G HGD  V
Sbjct: 121 PLDAMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMV 180
Query: 216 ALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAAN 275
            L    ++ G+P+  F+   ++A   E       E+V+     +   G   +A   + A 
Sbjct: 181 PLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVN-----LLKTGSAYYAPAAATAQ 235
Query: 276 LARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLR 335
           +  ++++D++++ PV+    G YG++  D++  +P  LG GGV  +  + LN+EE   L 
Sbjct: 236 MVEAVLKDKKRVMPVAAYLTGQYGLN--DIYFGVPVILGAGGVEKILELPLNEEEMALLN 293
Query: 336 NSAKTI 341
            SAK +
Sbjct: 294 ASAKAV 299

>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309

Iteration: 1
 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 162/308 (52%), Gaps = 13/308 (4%)
Query: 37  HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKIL 95
             KIS+IG G VG   A  +  ++   ++ L+D      +G+ LDL  A+       ++ 
Sbjct: 2   RKKISIIGAGFVGSTTAHWLAAKEL-GDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVT 60
Query: 96  ASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVAN 155
            + +YA TA SD+ +VT+GA +  G              +A I      SP+ ++++V N
Sbjct: 61  GTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120
Query: 156 PVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSV 215
           P+D +TY+A ++SG P  RVIG    LD++R+R  +A    V+ +DVQA ++G HGD  V
Sbjct: 121 PLDAMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMV 180
Query: 216 ALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYSA 273
            L     + G+P+  F+   ++A   + +E   K       E+++L   G   +A   + 
Sbjct: 181 PLPRFSCISGIPVSEFIAPDRLA---QIVERTRK----GGGEIVNLLKTGSAYYAPAAAT 233
Query: 274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHR 333
           A +  ++++D++++ PV+    G YG++  D++  +P  LG GGV  +  + LN+EE   
Sbjct: 234 AQMVEAVLKDKKRVMPVAAYLTGQYGLN--DIYFGVPVILGAGGVEKILELPLNEEEMAL 291
Query: 334 LRNSAKTI 341
           L  SAK +
Sbjct: 292 LNASAKAV 299

>pdb|1HYH|A Chain A, Crystal Structure Of L-2-hydroxyisocaproate Dehydrogenase From Lactobacillus Confusus At 2.2 Angstroms Resolution-an Example Of Strong Asymmetry Between Subunits Length = 309

Iteration: 1
 Score =  141 bits (356), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 158/307 (51%), Gaps = 15/307 (4%)
Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
           KI +IG GNVG A+A  ++ Q   ++   +DA   K++ + +D Q A A L     +   
Sbjct: 3   KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIN 62
Query: 99  DYAVTAGSDLCIVTAGARQIAGEX----XXXXXXXXXXXFKAIIPPLVKYSPDCILLIVA 154
           D+A  A +D+ I T G  ++  +                 +++   L +     +L++++
Sbjct: 63  DWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122
Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
           NPVD++T +   ++G P+++VIG+GT LD++R +  + +  D++ + V  Y +GEHG+S 
Sbjct: 123 NPVDVITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGNSQ 182
Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAA 274
              WS++ V G PI++  +   I      L +I +E     + V++ KGYTS+ +  SA 
Sbjct: 183 FVAWSTVRVMGQPIVTLADAGDI-----DLAAIEEEARKGGFTVLNGKGYTSYGVATSAI 237
Query: 275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRL 334
            +A++++ D      VS         D   ++LS PA +GR GVL  T + L  +E  +L
Sbjct: 238 RIAKAVMADAHAELVVSNRR------DDMGMYLSYPAIIGRDGVLAETTLDLTTDEQEKL 291
Query: 335 RNSAKTI 341
             S   I
Sbjct: 292 LQSRDYI 298

>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase. Length = 316

Iteration: 1
 Score =  140 bits (354), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 153/302 (50%), Gaps = 11/302 (3%)
Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILAS 97
           KI ++G+G +G  +A T++ Q  + ++ L D   +   G+ LD  H         K+  S
Sbjct: 6   KIVLVGSGMIGGVMA-TLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS 64
Query: 98  VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAII-----PPLVKYSPDCILLI 152
             Y   AGSD+ IVTAG  +  G+                I       + K  P+  +++
Sbjct: 65  NTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNCPNAFIIV 124
Query: 153 VANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
           V NPVD++  +  + SG+P N++IG G  LD+SR ++ ++  L+V  +DV A+IVG HG+
Sbjct: 125 VTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN 184
Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS 272
             V L   I+VGG+P+  F+  + I+     LE+I    V++A E+++L      A   +
Sbjct: 185 KMVLLKRYITVGGIPLQEFINNKLIS--DAELEAIFDRTVNTALEIVNLHASPYVAPAAA 242
Query: 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
              +A S ++D +K+   S L +G YG    D+F   P  LG  GV  V  + LN EE  
Sbjct: 243 IIEMAESYLKDLKKVLICSTLLEGQYG--HSDIFGGTPVVLGANGVEQVIELQLNSEEKA 300
Query: 333 RL 334
           + 
Sbjct: 301 KF 302

>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase Length = 316

Iteration: 1
 Score =  140 bits (353), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 153/302 (50%), Gaps = 11/302 (3%)
Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILAS 97
           KI ++G+G +G  +A T++ Q  + ++ L D   +   G+ LD  H         K+  S
Sbjct: 6   KIVLVGSGMIGGVMA-TLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS 64
Query: 98  VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAII-----PPLVKYSPDCILLI 152
             Y   AGSD+ IVTAG  +  G+                I       + K  P+  +++
Sbjct: 65  NTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIV 124
Query: 153 VANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
           V NPVD++  +  + SG+P N++IG G  LD+SR ++ ++  L+V  +DV A+IVG HG+
Sbjct: 125 VTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN 184
Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS 272
             V L   I+VGG+P+  F+  + I+     LE+I    V++A E+++L      A   +
Sbjct: 185 KMVLLKRYITVGGIPLQEFINNKLIS--DAELEAIFDRTVNTALEIVNLHASPYVAPAAA 242
Query: 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
              +A S ++D +K+   S L +G YG    D+F   P  LG  GV  V  + LN EE  
Sbjct: 243 IIEMAESYLKDLKKVLICSTLLEGQYG--HSDIFGGTPVVLGANGVEQVIELQLNSEEKA 300
Query: 333 RL 334
           + 
Sbjct: 301 KF 302

>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2-({4- Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane- 1,1,2-Triol Length = 323

Iteration: 1
 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 153/302 (50%), Gaps = 11/302 (3%)
Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILAS 97
           KI ++G+G +G  +A T++ Q  + ++ L D   +   G+ LD  H         K+  S
Sbjct: 5   KIVLVGSGMIGGVMA-TLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS 63
Query: 98  VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAII-----PPLVKYSPDCILLI 152
             Y   AG+D+ IVTAG  +  G+                I       + K  P+  +++
Sbjct: 64  NTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIV 123
Query: 153 VANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
           V NPVD++  +  + SG+P N++IG G  LD+SR ++ ++  L+V  +DV A+IVG HG+
Sbjct: 124 VTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN 183
Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS 272
             V L   I+VGG+P+  F+  + I+     LE+I    V++A E+++L      A   +
Sbjct: 184 KMVLLKRYITVGGIPLQEFINNKLIS--DAELEAIFDRTVNTALEIVNLHASPYVAPAAA 241
Query: 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
              +A S ++D +K+   S L +G YG    D+F   P  LG  GV  V  + LN EE  
Sbjct: 242 IIEMAESYLKDLKKVLICSTLLEGQYG--HSDIFGGTPVVLGANGVEQVIELQLNSEEKA 299
Query: 333 RL 334
           + 
Sbjct: 300 KF 301

>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 322

Iteration: 1
 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 153/302 (50%), Gaps = 11/302 (3%)
Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILAS 97
           KI ++G+G +G  +A T++ Q  + ++ L D   +   G+ LD  H         K+  S
Sbjct: 6   KIVLVGSGMIGGVMA-TLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS 64
Query: 98  VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAII-----PPLVKYSPDCILLI 152
             Y   AG+D+ IVTAG  +  G+                I       + K  P+  +++
Sbjct: 65  NTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIV 124
Query: 153 VANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
           V NPVD++  +  + SG+P N++IG G  LD+SR ++ ++  L+V  +DV A+IVG HG+
Sbjct: 125 VTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN 184
Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS 272
             V L   I+VGG+P+  F+  + I+     LE+I    V++A E+++L      A   +
Sbjct: 185 KMVLLKRYITVGGIPLQEFINNKLIS--DAELEAIFDRTVNTALEIVNLHASPYVAPAAA 242
Query: 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
              +A S ++D +K+   S L +G YG    D+F   P  LG  GV  V  + LN EE  
Sbjct: 243 IIEMAESYLKDLKKVLICSTLLEGQYG--HSDIFGGTPVVLGANGVEQVIELQLNSEEKA 300
Query: 333 RL 334
           + 
Sbjct: 301 KF 302

>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2,6- Naphthalenedicarboxylic Acid Length = 321

Iteration: 1
 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 153/302 (50%), Gaps = 11/302 (3%)
Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILAS 97
           KI ++G+G +G  +A T++ Q  + ++ L D   +   G+ LD  H         K+  S
Sbjct: 5   KIVLVGSGMIGGVMA-TLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS 63
Query: 98  VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAII-----PPLVKYSPDCILLI 152
             Y   AG+D+ IVTAG  +  G+                I       + K  P+  +++
Sbjct: 64  NTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIV 123
Query: 153 VANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
           V NPVD++  +  + SG+P N++IG G  LD+SR ++ ++  L+V  +DV A+IVG HG+
Sbjct: 124 VTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN 183
Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS 272
             V L   I+VGG+P+  F+  + I+     LE+I    V++A E+++L      A   +
Sbjct: 184 KMVLLKRYITVGGIPLQEFINNKLIS--DAELEAIFDRTVNTALEIVNLHASPYVAPAAA 241
Query: 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
              +A S ++D +K+   S L +G YG    D+F   P  LG  GV  V  + LN EE  
Sbjct: 242 IIEMAESYLKDLKKVLICSTLLEGQYG--HSDIFGGTPVVLGANGVEQVIELQLNSEEKA 299
Query: 333 RL 334
           + 
Sbjct: 300 KF 301

>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324

Iteration: 1
 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 164/316 (51%), Gaps = 13/316 (4%)
Query: 31  PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA---A 87
           P    R+ KI++IG+G +G  +A     ++   ++ L D      +G+ LD+  ++    
Sbjct: 2   PGSMARN-KIALIGSGMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAESSPVDG 59
Query: 88  FLPRTKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPD 147
           F    K   + DYA   G+D+ IVTAG  +  G              + +   + KY+P+
Sbjct: 60  F--DAKFTGANDYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPE 117
Query: 148 CILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIV 207
             ++ + NP+D + +   K SGLP+++V+G    LDS+RFR+ L++  +V+ +DV  +++
Sbjct: 118 AFVICITNPLDAMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVL 177
Query: 208 GEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYT 265
           G HGDS V L    +V G+P+   ++    + +K  L+ I +   D   E++ L   G  
Sbjct: 178 GGHGDSMVPLARYSTVAGIPLPDLVKMGWTSQDK--LDKIIQRTRDGGAEIVGLLKTGSA 235
Query: 266 SWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIH 325
            +A   SA  +A S ++D++++ PV+    G YG+   D+++ +P  +G  GV  +  I 
Sbjct: 236 FYAPAASAIQMAESYLKDKKRVLPVAAQLSGQYGVK--DMYVGVPTVIGANGVERIIEID 293
Query: 326 LNQEESHRLRNSAKTI 341
           L+++E  +   S  ++
Sbjct: 294 LDKDEKAQFDKSVASV 309

>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p Mutant Complexed With Nadh And Oxamate Length = 322

Iteration: 1
 Score =  138 bits (347), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 153/302 (50%), Gaps = 11/302 (3%)
Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILAS 97
           KI ++G+G +G  +A T++ Q  + ++ L D   +   G+ LD  H         K+  S
Sbjct: 6   KIVLVGSGMIGGVMA-TLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS 64
Query: 98  VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAII-----PPLVKYSPDCILLI 152
             Y   AG+D+ IVTAG  +  G+                I       + K  P+  +++
Sbjct: 65  NTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIV 124
Query: 153 VANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
           V NPVD++  +  + SG+P N++IG G  LD+SR ++ ++  L+V  +DV A+IVG HG+
Sbjct: 125 VTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN 184
Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS 272
             V L   I+VGG+P+  F+  + I+     LE+I    V++A E+++L      A   +
Sbjct: 185 KMVLLKRYITVGGIPLQEFINNKLIS--DAELEAIFDRTVNTALEIVNLHAAPYVAPAAA 242
Query: 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
              +A S ++D +K+   S L +G YG    D+F   P  LG  GV  V  + LN EE  
Sbjct: 243 IIEMAESYLKDLKKVLICSTLLEGQYG--HSDIFGGTPVVLGANGVEQVIELQLNSEEKA 300
Query: 333 RL 334
           + 
Sbjct: 301 KF 302

>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With Nad And Oxq Length = 329

Iteration: 1
 Score =  135 bits (339), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 152/298 (51%), Gaps = 16/298 (5%)
Query: 31  PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP 90
           P+  +R  K+++IG+G +G  +      ++  + + L D       G+ LDL H  + + 
Sbjct: 1   PALVQRRKKVAMIGSGMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVV- 58
Query: 91  RTKILASVDYAVTA---GSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAII-----PPLV 142
            T +    +Y+  A   G+D  IVTAG  ++ G+            F + I       + 
Sbjct: 59  DTNVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIK 118
Query: 143 KYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDV 202
           KY P   +++V NP+D +  V  + SG+P+N + G    LDS RFR  +AD L V+ +DV
Sbjct: 119 KYCPKTFIIVVTNPLDCMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV 178
Query: 203 QAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL- 261
           QA ++G HGD  V L   I+V G PI  F+ K  +  EK+ LE I +    S  E++   
Sbjct: 179 QATVIGTHGDCMVPLVRYITVNGYPIQKFI-KDGVVTEKQ-LEEIAEHTKVSGGEIVRFL 236
Query: 262 -KGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGV 318
            +G   +A   SA  +A S + D++++ P SV   G YG+   D+F+ LPA +G  G+
Sbjct: 237 GQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGLK--DMFIGLPAVIGGAGI 292

>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form Length = 331

Iteration: 1
 Score =  135 bits (339), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 152/298 (51%), Gaps = 16/298 (5%)
Query: 31  PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP 90
           P+  +R  K+++IG+G +G  +      ++  + + L D       G+ LDL H  + + 
Sbjct: 3   PALVQRRKKVAMIGSGMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVV- 60
Query: 91  RTKILASVDYAVTA---GSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAII-----PPLV 142
            T +    +Y+  A   G+D  IVTAG  ++ G+            F + I       + 
Sbjct: 61  DTNVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIK 120
Query: 143 KYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDV 202
           KY P   +++V NP+D +  V  + SG+P+N + G    LDS RFR  +AD L V+ +DV
Sbjct: 121 KYCPKTFIIVVTNPLDCMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV 180
Query: 203 QAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL- 261
           QA ++G HGD  V L   I+V G PI  F+ K  +  EK+ LE I +    S  E++   
Sbjct: 181 QATVIGTHGDCMVPLVRYITVNGYPIQKFI-KDGVVTEKQ-LEEIAEHTKVSGGEIVRFL 238
Query: 262 -KGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGV 318
            +G   +A   SA  +A S + D++++ P SV   G YG+   D+F+ LPA +G  G+
Sbjct: 239 GQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGLK--DMFIGLPAVIGGAGI 294

>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium Vivax: Complex With Nadh Length = 321

Iteration: 1
 Score =  134 bits (338), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 153/302 (50%), Gaps = 11/302 (3%)
Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILAS 97
           KI ++G+G +G  +A T++ Q  + ++ + D   +  +G+ LD  H+        K+  S
Sbjct: 5   KIVLVGSGMIGGVMA-TLIVQKNLGDVVMFDVVKNMPQGKALDTSHSNVMAYSNCKVTGS 63
Query: 98  VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAII-----PPLVKYSPDCILLI 152
             Y    G+D+ IVTAG  +  G+                I       +    P+  +++
Sbjct: 64  NSYDDLKGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNLCPNAFIIV 123
Query: 153 VANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
           V NPVD++  + ++ SG+P N++IG G  LD+SR ++ ++  L+V  +DV A IVG HG+
Sbjct: 124 VTNPVDVMVQLLFEHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNALIVGAHGN 183
Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS 272
             V L   I+VGG+P+  F+  ++I    E +E I    V++A E+++L      A   +
Sbjct: 184 KMVLLKRYITVGGIPLQEFINNKKIT--DEEVEGIFDRTVNTALEIVNLLASPYVAPAAA 241
Query: 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
              +A S ++D +K+   S L +G YG    ++F   P  +G  GV  V  + LN EE  
Sbjct: 242 IIEMAESYLKDIKKVLVCSTLLEGQYG--HSNIFGGTPLVIGGTGVEQVIELQLNAEEKT 299
Query: 333 RL 334
           + 
Sbjct: 300 KF 301

>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6 Angstroms Length = 331

Iteration: 1
 Score =  134 bits (338), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 152/298 (51%), Gaps = 16/298 (5%)
Query: 31  PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP 90
           P+  +R  K+++IG+G +G  +      ++  + + L D       G+ LDL H  + + 
Sbjct: 3   PALVQRRKKVAMIGSGMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVV- 60
Query: 91  RTKILASVDYAVTA---GSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAII-----PPLV 142
            T +    +Y+  A   G+D  IVTAG  ++ G+            F + I       + 
Sbjct: 61  DTNVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIK 120
Query: 143 KYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDV 202
           KY P   +++V NP+D +  V  + SG+P+N + G    LDS RFR  +AD L V+ +DV
Sbjct: 121 KYCPKTFIIVVTNPLDCMVKVMXEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDV 180
Query: 203 QAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL- 261
           QA ++G HGD  V L   I+V G PI  F+ K  +  EK+ LE I +    S  E++   
Sbjct: 181 QATVIGTHGDCMVPLVRYITVNGYPIQKFI-KDGVVTEKQ-LEEIAEHTKVSGGEIVRFL 238
Query: 262 -KGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGV 318
            +G   +A   SA  +A S + D++++ P SV   G YG+   D+F+ LPA +G  G+
Sbjct: 239 GQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGLK--DMFIGLPAVIGGAGI 294

>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei Length = 322

Iteration: 1
 Score =  134 bits (336), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 151/302 (50%), Gaps = 11/302 (3%)
Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILAS 97
           KI ++G+G +G  +A T++ Q  + ++ + D   +   G+ LD  H         K+  S
Sbjct: 6   KIVLVGSGMIGGVMA-TLIVQKNLGDVVMFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS 64
Query: 98  VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAII-----PPLVKYSPDCILLI 152
             Y     +D+ IVTAG  +  G+                I       +    P+  +++
Sbjct: 65  NTYDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNNCPNAFIIV 124
Query: 153 VANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
           V NPVD++  +  + SG+P N+++G G  LD+SR ++ ++  L+V  +DV A+IVG HG+
Sbjct: 125 VTNPVDVMVQLLHQHSGVPKNKIVGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN 184
Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS 272
             V L   I+VGG+P+  F+  ++I    + L++I    +++A E+++L      A   +
Sbjct: 185 KMVLLKRYITVGGIPLQEFINNKKIT--DQELDAIFDRTINTALEIVNLHASPYVAPAAA 242
Query: 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
              +A S IRD RK+   S L +G YG    D+F   P  +G  GV  V  + LN +E  
Sbjct: 243 IIEMAESYIRDLRKVLICSTLLEGQYG--HKDIFAGTPLVIGGNGVEQVIELQLNADEKK 300
Query: 333 RL 334
           + 
Sbjct: 301 KF 302

>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (holo Form) Length = 303

Iteration: 1
 Score =  132 bits (331), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 143/290 (49%), Gaps = 16/290 (5%)
Query: 55  TILTQDFVEELALVD--AKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVT 112
            I  +D  +E+  VD   K D   G+  D  H  A+   T++     Y  TAGSD+ ++T
Sbjct: 19  NIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQG-GYEDTAGSDVVVIT 77
Query: 113 AGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPS 172
           AG  +  G+             + I   L +++ D I L  +NPVD+L    ++      
Sbjct: 78  AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHLYEAGDRSR 137
Query: 173 NRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGV-PILSF 231
            +VIG G  LDS+RFR++L++  D   Q+V+  I+GEHGD+ V ++S +SV G  P  S 
Sbjct: 138 EQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFSKVSVDGTDPEFSG 197
Query: 232 LEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVS 291
            EK+Q+            ++ +SA +VI  KG T W      A++  +I+ D  ++ P S
Sbjct: 198 DEKEQLL----------GDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPAS 247
Query: 292 VLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTI 341
           V  +G +G +  D    +P  LG  GV  +    L+  E   + ++A+ +
Sbjct: 248 VKLEGEFGHE--DTAFGVPVSLGSNGVEEIVEWDLDDYEQDLMADAAEKL 295

>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (Holo Form) Length = 304

Iteration: 1
 Score =  132 bits (331), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 143/290 (49%), Gaps = 16/290 (5%)
Query: 55  TILTQDFVEELALVD--AKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVT 112
            I  +D  +E+  VD   K D   G+  D  H  A+   T++     Y  TAGSD+ ++T
Sbjct: 20  NIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQG-GYEDTAGSDVVVIT 78
Query: 113 AGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPS 172
           AG  +  G+             + I   L +++ D I L  +NPVD+L    ++      
Sbjct: 79  AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHLYEAGDRSR 138
Query: 173 NRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGV-PILSF 231
            +VIG G  LDS+RFR++L++  D   Q+V+  I+GEHGD+ V ++S +SV G  P  S 
Sbjct: 139 EQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFSKVSVDGTDPEFSG 198
Query: 232 LEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVS 291
            EK+Q+            ++ +SA +VI  KG T W      A++  +I+ D  ++ P S
Sbjct: 199 DEKEQLL----------GDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPAS 248
Query: 292 VLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTI 341
           V  +G +G +  D    +P  LG  GV  +    L+  E   + ++A+ +
Sbjct: 249 VKLEGEFGHE--DTAFGVPVSLGSNGVEEIVEWDLDDYEQDLMADAAEKL 296

>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic Malate Dehydrogenase In The Apo Form Length = 303

Iteration: 1
 Score =  131 bits (329), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 143/290 (49%), Gaps = 16/290 (5%)
Query: 55  TILTQDFVEELALVD--AKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVT 112
            I  +D  +E+  VD   K D   G+  D  H  A+   T++     Y  TAGSD+ ++T
Sbjct: 19  NIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQG-GYEDTAGSDVVVIT 77
Query: 113 AGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPS 172
           AG  +  G+             + I   L +++ D I L  +NPVD+L    ++      
Sbjct: 78  AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHLYEAGDRSR 137
Query: 173 NRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGV-PILSF 231
            +VIG G  LDS+RFR++L++  D   Q+V+  I+GEHGD+ V ++S + V G  P  S 
Sbjct: 138 EQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFSKVRVDGTDPEFSG 197
Query: 232 LEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVS 291
            EK+Q+            ++ +SA +VI  KG T W      A++  +I+ D  ++ P S
Sbjct: 198 DEKEQLL----------GDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGRVLPAS 247
Query: 292 VLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTI 341
           V  +G +G +  D    +P +LG  GV  +    L+  E   + ++A+ +
Sbjct: 248 VKLEGEFGHE--DTAFGVPVRLGSNGVEEIVEWDLDDYEQDLMADAAEKL 295

>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate Dehydrogenase From Haloarcula Marismortui (radiation Damage Series) Length = 304

Iteration: 1
 Score =  130 bits (328), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 143/290 (49%), Gaps = 16/290 (5%)
Query: 55  TILTQDFVEELALVD--AKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVT 112
            I  +D  +E+  VD   K D   G+  D  H  A+   T++     Y  TAGSD+ ++T
Sbjct: 20  NIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQG-GYEDTAGSDVVVIT 78
Query: 113 AGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPS 172
           AG  +  G+             + I   L +++ D I L  +NPVD+L    ++      
Sbjct: 79  AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHLYEAGDRSR 138
Query: 173 NRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGV-PILSF 231
            +VIG G  LDS+RFR++L++  D   Q+V+  I+GEHGD+ V ++S + V G  P  S 
Sbjct: 139 EQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFSKVRVDGTDPEFSG 198
Query: 232 LEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVS 291
            EK+Q+            ++ +SA +VI  KG T W      A++  +I+ D  ++ P S
Sbjct: 199 DEKEQLL----------GDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPAS 248
Query: 292 VLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTI 341
           V  +G +G +  D    +P +LG  GV  +    L+  E   + ++A+ +
Sbjct: 249 VKLEGEFGHE--DTAFGVPVRLGSNGVEEIVEWDLDDYEQDLMADAAEKL 296

>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate Dehydrogenase From An Archaebacterium Length = 303

Iteration: 1
 Score =  130 bits (328), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 143/290 (49%), Gaps = 16/290 (5%)
Query: 55  TILTQDFVEELALVD--AKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVT 112
            I  +D  +E+  VD   K D   G+  D  H  A+   T++     Y  TAGSD+ ++T
Sbjct: 19  NIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQG-GYEDTAGSDVVVIT 77
Query: 113 AGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPS 172
           AG  +  G+             + I   L +++ D I L  +NPVD+L    ++      
Sbjct: 78  AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHLYEAGDRSR 137
Query: 173 NRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGV-PILSF 231
            +VIG G  LDS+RFR++L++  D   Q+V+  I+GEHGD+ V ++S + V G  P  S 
Sbjct: 138 EQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFSKVRVDGTDPEFSG 197
Query: 232 LEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVS 291
            EK+Q+            ++ +SA +VI  KG T W      A++  +I+ D  ++ P S
Sbjct: 198 DEKEQLL----------GDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPAS 247
Query: 292 VLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTI 341
           V  +G +G +  D    +P +LG  GV  +    L+  E   + ++A+ +
Sbjct: 248 VKLEGEFGHE--DTAFGVPVRLGSNGVEEIVEWDLDDYEQDLMADAAEKL 295

>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321

Iteration: 1
 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 153/313 (48%), Gaps = 9/313 (2%)
Query: 37  HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKIL 95
             KI+++G GN+G  +A   L +    ++ L D       G+ LDL           K+ 
Sbjct: 5   RKKITLVGAGNIGGTLAHLALIKQL-GDVVLFDIAQGXPNGKALDLLQTCPIEGVDFKVR 63
Query: 96  ASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVAN 155
            + DY     SD+ IVTAG  +  G              + +   +    P+  ++ + N
Sbjct: 64  GTNDYKDLENSDVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAFVICITN 123
Query: 156 PVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSV 215
           P+DI      K SG+P N+++G    LDS+RFR  LAD L+V+ Q VQAY+ G HGD+ V
Sbjct: 124 PLDIXVNXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQAYVXGGHGDTXV 183
Query: 216 ALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYSA 273
            L    +V GV +   +++ ++  ++E L++I         E+++L   G   +A   + 
Sbjct: 184 PLTKXSNVAGVSLEQLVKEGKL--KQERLDAIVSRTRSGGGEIVALLKTGSAYYAPAAAG 241
Query: 274 ANLARSIIRDQRKIHPVSVLAK-GFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
              A S ++D++ I P +   K G YG+D  D+F+ +P ++   GV  +  + ++ +E  
Sbjct: 242 IQXAESFLKDKKXILPCAAKVKAGXYGLD-EDLFVGVPTEISANGVRPI-EVEISDKERE 299
Query: 333 RLRNSAKTILEVQ 345
           +L+ S   I ++ 
Sbjct: 300 QLQVSINAIKDLN 312

>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328

Iteration: 1
 Score =  125 bits (315), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 155/306 (50%), Gaps = 8/306 (2%)
Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR-TKILAS 97
           KIS+IG G +G  IA  +L Q  + ++ + D      +G+ LDL H  A +    KI   
Sbjct: 16  KISIIGAGQIGSTIA-LLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGE 74
Query: 98  VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANPV 157
            +Y     SD+ I+TAG  +                  ++   + KY P+  ++ + NP+
Sbjct: 75  NNYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPL 134
Query: 158 DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVAL 217
           D + Y   + SG+P+N+V G    LDS+RFR  L+  L V   DV A +VG HGD  + L
Sbjct: 135 DAMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGGHGDEMIPL 194
Query: 218 WSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYSAAN 275
            SS+++GG+ +  F+E+ +I + +  +  I K+      E++ L   G   +A   SA  
Sbjct: 195 TSSVTIGGILLSDFVEQGKITHSQ--INEIIKKTAFGGGEIVELLKTGSAFYAPAASAVA 252
Query: 276 LARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLR 335
           +A++ ++D + +   S    G Y ++  ++F+ +P  +G+ G+  V  ++L+ +E     
Sbjct: 253 MAQAYLKDSKSVLVCSTYLTGQYNVN--NLFVGVPVVIGKNGIEDVVIVNLSDDEKSLFS 310
Query: 336 NSAKTI 341
            S ++I
Sbjct: 311 KSVESI 316

>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313

Iteration: 1
 Score =  124 bits (312), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 91/313 (29%), Positives = 161/313 (51%), Gaps = 21/313 (6%)
Query: 39  KISVIG-TGNVGMAIAQTILTQDFVEELALV--DAKADKLRGEMLDLQHAAAFLPRTKIL 95
           K+++IG +G VG A A  +  + F+++L L+  +   +KL G   D+  A   L  T+  
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDA---LAGTRSD 58
Query: 96  ASV------DYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCI 149
           A++      +  +   SD+ I+T+G  +  G                    + +   D  
Sbjct: 59  ANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTK 117
Query: 150 LLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGE 209
           + ++ NPVD++TY A   S    N+V G GT+LDS RF+  +A    V+  +V+  I+GE
Sbjct: 118 IFVITNPVDVMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRIIGE 177
Query: 210 HGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAI 269
           HGDS V L S+ S+GG+PI  F   +++      ++ I ++V     ++I LKG + +  
Sbjct: 178 HGDSMVPLLSATSIGGIPIQKFERFKELP-----IDEIIEDVKTKGEQIIRLKGGSEFGP 232
Query: 270 GYSAANLARSIIRDQRKIHPVSVLAKG-FYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQ 328
             +  N+ R I+ +++++  +S    G F GI   DV + +P ++GR G+  V +I L++
Sbjct: 233 AAAILNVVRCIVNNEKRLLTLSAYVDGEFDGIR--DVCIGVPVKIGRDGIEEVVSIELDK 290
Query: 329 EESHRLRNSAKTI 341
           +E    R SA+ I
Sbjct: 291 DEIIAFRKSAEII 303

>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 95/232 (40%), Gaps = 7/232 (3%)
Query: 39  KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS 97
           K++++G  G +G  +AQT         L L D  A  L G   +++H           + 
Sbjct: 10  KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSD 69
Query: 98  VDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCI-LLIVANP 156
           +  A+T  +   + + GA +  G                +   +  Y PDC  ++I+ NP
Sbjct: 70  IKEALT-DAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNP 128
Query: 157 VDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDV-QAYIVGEHGDSSV 215
            DI   V    SGL  ++V  +   LDS+R +  LA H  +    V      G HG+   
Sbjct: 129 ADITGLVTLIYSGLKPSQVT-TLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGHGEQMA 187
Query: 216 ALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSW 267
              S+  V G P+   +   ++  E+     + + VV     +I L+G +S+
Sbjct: 188 VFASTAKVNGTPLTDLIGTDKLTNEQ--WAELKQRVVKGGANIIKLRGRSSF 237

>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms Resolution Length = 312

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 126/293 (43%), Gaps = 32/293 (10%)
Query: 39  KISVIGT-GNVGMAIAQTILTQ-DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
           K++V+G  G +G A+A  + TQ     EL+L D  A    G  +DL H    +       
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDI-APVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 97  SVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANP 156
                   G+D+ +++AG R+  G              K ++  + K  P   + I+ NP
Sbjct: 61  EDATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 157 VDILTYVA---WKLSGL-PSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
           V+    +A    K +G+   N++ G  T LD  R    +A+       +V+  ++G H  
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGV-TTLDIIRSNTFVAELKGKQPGEVEVPVIGGH-- 177
Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK---GYTSWAI 269
           S V +   +S   VP +SF E Q++A        + K + ++  EV+  K   G  + ++
Sbjct: 178 SGVTILPLLSQ--VPGVSFTE-QEVA-------DLTKRIQNAGTEVVEAKAGGGSATLSM 227
Query: 270 GYSAANLARSIIR----DQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGV 318
           G +AA    S++R    +Q  +    V   G Y       F S P  LG+ GV
Sbjct: 228 GQAAARFGLSLVRALQGEQGVVECAYVEGDGQYA-----RFFSQPLLLGKNGV 275

>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 125/293 (42%), Gaps = 32/293 (10%)
Query: 39  KISVIGT-GNVGMAIAQTILTQ-DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
           K++V+G  G +G A+A  + TQ     EL+L D  A    G  +DL H    +       
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDI-APVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 97  SVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANP 156
                   G+D+ +++AG  +  G              K ++  + K  P   + I+ NP
Sbjct: 61  EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 157 VDILTYVA---WKLSGL-PSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
           V+    +A    K +G+   N++ G  T LD  R    +A+       +V+  ++G H  
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGV-TTLDIIRSNTFVAELKGKQPGEVEVPVIGGH-- 177
Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK---GYTSWAI 269
           S V +   +S   VP +SF E Q++A        + K + ++  EV+  K   G  + ++
Sbjct: 178 SGVTILPLLSQ--VPGVSFTE-QEVA-------DLTKRIQNAGTEVVEAKAGGGSATLSM 227
Query: 270 GYSAANLARSIIR----DQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGV 318
           G +AA    S++R    +Q  +    V   G Y       F S P  LG+ GV
Sbjct: 228 GQAAARFGLSLVRALQGEQGVVECAYVEGDGQYA-----RFFSQPLLLGKNGV 275

>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 362

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 136/316 (43%), Gaps = 31/316 (9%)
Query: 39  KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH------AAAFLPR 91
           K++++G  G +G  +A  +     V  L L D       G   D+ H         FL +
Sbjct: 46  KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVV--NAPGVTADISHMDTGAVVRGFLGQ 103
Query: 92  TKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILL 151
            ++ A++      G DL IV AG  +  G              K +   + K  P  I+ 
Sbjct: 104 QQLEAAL-----TGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVN 158
Query: 152 IVANPVDILTYVA---WKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVG 208
           +++NPV+    +A   +K +G    + +   T LD  R    +A+ L ++ +DV   +VG
Sbjct: 159 LISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG 218
Query: 209 EH-GDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSW 267
            H G + + L S +     P  SF + ++I+Y  + +++   EVV    E  +  G  + 
Sbjct: 219 GHAGVTILPLLSQVK----PPSSFTQ-EEISYLTDRIQNGGTEVV----EAKAGAGSATL 269
Query: 268 AIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDV-FLSLPAQLGRGGVLGVTNI-H 325
           ++ Y+A   A + +R  R      V+   F      ++ F +   +LGR G+  V ++  
Sbjct: 270 SMAYAAVKFADACLRGLR--GDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGP 327
Query: 326 LNQEESHRLRNSAKTI 341
           LN+ E   L  + K +
Sbjct: 328 LNEYERIGLEKAKKEL 343

>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 326

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 135/317 (42%), Gaps = 33/317 (10%)
Query: 39  KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH------AAAFLPR 91
           K++++G  G +G  +A  +     V  L L D       G   D+ H         FL +
Sbjct: 10  KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVV--NAPGVTADISHMDTGAVVRGFLGQ 67
Query: 92  TKILASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILL 151
            ++ A++      G DL IV AG  +  G              K +   + K  P  I+ 
Sbjct: 68  QQLEAAL-----TGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVN 122
Query: 152 IVANPVD----ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIV 207
           +++NPV+    I   V  K       R++G  T LD  R    +A+ L ++ +DV   +V
Sbjct: 123 LISNPVNSTVPIAAEVFKKAGTYDPKRLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 181
Query: 208 GEH-GDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTS 266
           G H G + + L S +     P  SF + ++I+Y  + +++   EVV    E  +  G  +
Sbjct: 182 GGHAGVTILPLLSQVK----PPSSFTQ-EEISYLTDRIQNGGTEVV----EAKAGAGSAT 232
Query: 267 WAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDV-FLSLPAQLGRGGVLGVTNIH 325
            ++ Y+A   A + +R  R      V+   F      ++ F +   +LGR G+  V ++ 
Sbjct: 233 LSMAYAAVKFADACLRGLR--GDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLG 290
Query: 326 -LNQEESHRLRNSAKTI 341
            LN+ E   L  + K +
Sbjct: 291 PLNEYERIGLEKAKKEL 307

>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 124/293 (42%), Gaps = 32/293 (10%)
Query: 39  KISVIGT-GNVGMAIAQTILTQ-DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
           K++V+G  G +G A+A  + TQ     EL+L D  A    G  +DL H    +       
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDI-APVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 97  SVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVANP 156
                   G+D+ +++AG  +  G              K ++  + K  P   + I+ NP
Sbjct: 61  EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 157 VDILTYVA---WKLSGL-PSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
           V+    +A    K +G+   N++ G  T LD       +A+       +V+  ++G H  
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGV-TTLDIICSNTFVAELKGKQPGEVEVPVIGGH-- 177
Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK---GYTSWAI 269
           S V +   +S   VP +SF E Q++A        + K + ++  EV+  K   G  + ++
Sbjct: 178 SGVTILPLLSQ--VPGVSFTE-QEVA-------DLTKRIQNAGTEVVEAKAGGGSATLSM 227
Query: 270 GYSAANLARSIIR----DQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGV 318
           G +AA    S++R    +Q  +    V   G Y       F S P  LG+ GV
Sbjct: 228 GQAAARFGLSLVRALQGEQGVVECAYVEGDGQYA-----RFFSQPLLLGKNGV 275

>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 124/293 (42%), Gaps = 33/293 (11%)
Query: 39  KISVIGT-GNVGMAIAQTILTQDFV---EELALVDAKADKLRGEMLDLQHAAAFLPRTKI 94
           K++VIG  G +G A+A  +L ++ +    +LAL D  A    G   DL H    +     
Sbjct: 5   KVAVIGAAGGIGQALA--LLLKNRLPAGSDLALYDI-APVTPGVAADLSHIPTHVSIKGY 61
Query: 95  LASVDYAVTAGSDLCIVTAGARQIAGEXXXXXXXXXXXXFKAIIPPLVKYSPDCILLIVA 154
                     G+D+ +++AG  +  G              K++   +    P+  + I+ 
Sbjct: 62  AGEDPTPALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAVVCPNACIGIIT 121
Query: 155 NPVDILTYVA---WKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHG 211
           NPV+    +A    K +G+   R +   T LD  R    +A+    +  +V+  ++G H 
Sbjct: 122 NPVNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVPVIGGH- 180
Query: 212 DSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK---GYTSWA 268
                  S +++  +P+LS +E   + +  E + ++ K + ++  EV+  K   G  + +
Sbjct: 181 -------SGVTI--LPLLSQVEG--VEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLS 229
Query: 269 IGYSAANLARSIIR---DQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGV 318
            G +A     ++++    +  I    V   G +       F + P +LG+ GV
Sbjct: 230 XGQAACRFGLALVKALQGEEVIEYAYVEGNGEHA-----SFFAQPVKLGKEGV 277

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	350
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	1e-173
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	1e-170
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	1e-170
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	1e-169
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	1e-169
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	1e-168
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	1e-168
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	1e-168
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	1e-167
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	1e-165
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	1e-160
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	1e-156
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	1e-155
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	1e-151
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	1e-150
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	1e-148
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	1e-141
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	1e-139
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	1e-132
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	1e-130
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	1e-130
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	1e-127
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	1e-127
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	1e-125
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	1e-125
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	1e-125
3tl2_A	315	Malate dehydrogenase; center for structural genomi	1e-123
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	1e-122
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	1e-76
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	4e-51
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	4e-50
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	2e-47
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	3e-47
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	4e-46
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	6e-44
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	4e-43
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-11
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	8e-08
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	1e-07
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	4e-06
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	5e-06
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	6e-06
1vjt_A	483	Alpha-glucosidase; TM0752, structural genomics, JC	1e-05

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331

 Score =  483 bits (1246), Expect = e-173
 Identities = 177/325 (54%), Positives = 232/325 (71%), Gaps = 2/325 (0%)

Query: 25  INHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH 84
           I +        +  KI+V+G G VGMA A +IL +D  +ELALVD   DKL+GEM+DLQH
Sbjct: 8   IVNLLKEEQVPQ-NKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH 66

Query: 85  AAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY 144
            + FL   KI++S DY+VTA S L I+TAGARQ  GESRLNL+QRN+++FK IIP +VKY
Sbjct: 67  GSLFLKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY 126

Query: 145 SPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQA 204
           SP C LLIV+NPVDILTYVAWK+SG P NRVIGSG NLDS+RFR+L+ + L V+      
Sbjct: 127 SPQCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHG 186

Query: 205 YIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGY 264
           +++GEHGDSSV +WS ++V GV + S   +     +KE  + +HK+VVDSAYEVI LKGY
Sbjct: 187 WVLGEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKGY 246

Query: 265 TSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNI 324
           TSWAIG S A+LA SI+++ R++HP+S + KG YGI   DVFLS+P  LG+ G+  V  +
Sbjct: 247 TSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIK-EDVFLSVPCILGQNGISDVVKV 305

Query: 325 HLNQEESHRLRNSAKTILEVQSQLG 349
            L  +E  RL+ SA T+  +Q +L 
Sbjct: 306 TLTPDEEARLKKSADTLWGIQKELQ 330

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319

 Score =  476 bits (1228), Expect = e-170
 Identities = 130/317 (41%), Positives = 199/317 (62%), Gaps = 3/317 (0%)

Query: 34  TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTK 93
           T + TK++VIG G VG  +A     +    E+ L D   +++  E+LD+QH ++F P   
Sbjct: 4   TVKPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVS 63

Query: 94  ILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV 153
           I  S D  +   +D+ ++TAG RQ  G+SRL L+   +++ KAI+P LVK +P+ I +++
Sbjct: 64  IDGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLI 123

Query: 154 ANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDS 213
            NPVDI T+VA KL+GLP N++ GSGTNLDS+R RFL+A    VN ++V AYI GEHGDS
Sbjct: 124 TNPVDIATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDS 183

Query: 214 SVALWSSISVGGVPILSFLEKQ-QIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS 272
            V LW S ++GGVP+  +         + +  E IH+EV ++AY++I+ KG T++AIG S
Sbjct: 184 EVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGKGATNYAIGMS 243

Query: 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
             ++  +++ D  +I PVS + K F+GI   D+ +S+P  L R GV    N  ++ +E  
Sbjct: 244 GVDIIEAVLHDTNRILPVSSMLKDFHGIS--DICMSVPTLLNRQGVNNTINTPVSDKELA 301

Query: 333 RLRNSAKTILEVQSQLG 349
            L+ SA+T+ E  +Q G
Sbjct: 302 ALKRSAETLKETAAQFG 318

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  475 bits (1225), Expect = e-170
 Identities = 113/315 (35%), Positives = 186/315 (59%), Gaps = 3/315 (0%)

Query: 34  TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTK 93
            K  +K+++IG G VG + A T+  +    EL L+D   +K  GE +D+ H   F+ +  
Sbjct: 4   VKSRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMS 63

Query: 94  ILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV 153
           + A  DY+     D+ +VTAGA +  GE+RL+L ++N+ + K +   ++KY    ++L+V
Sbjct: 64  LYAG-DYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVV 122

Query: 154 ANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDS 213
           +NPVDI+TY+  K SGLP  +VIGSGT LDS RFR+LL++ L V+ ++V  YI+GEHGDS
Sbjct: 123 SNPVDIITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDS 182

Query: 214 SVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSA 273
            + LWS   + G  I  +++  +  + +E  + I ++V  +   +I  KG T + I  S 
Sbjct: 183 QLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSI 242

Query: 274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHR 333
             +  +++++Q  I  V  +  G YGI+  DV +SLP+ +   GV  V   +L  EE   
Sbjct: 243 NTIVETLLKNQNTIRTVGTVINGMYGIE--DVAISLPSIVNSEGVQEVLQFNLTPEEEEA 300

Query: 334 LRNSAKTILEVQSQL 348
           LR SA+ + +V +++
Sbjct: 301 LRFSAEQVKKVLNEV 315

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326

 Score =  473 bits (1220), Expect = e-169
 Identities = 122/312 (39%), Positives = 192/312 (61%), Gaps = 3/312 (0%)

Query: 34  TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTK 93
            K   K+++IG G VG + A  ++ Q   +EL ++D   +K  G+++DL H  AF P+  
Sbjct: 2   NKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPV 61

Query: 94  ILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV 153
             +   Y     +D+  + AGA Q  GE+RL L+++NL +FK I+  ++    D I L+ 
Sbjct: 62  KTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121

Query: 154 ANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDS 213
            NPVDILTY  WK SGLP  RVIGSGT LDS+RFRF+L+++     Q+V A+I+GEHGD+
Sbjct: 122 TNPVDILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEHGDT 181

Query: 214 SVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSA 273
            + +WS  +VGGVP+   +EK   AY++E L+ I  +V ++AY +I  KG T + +  S 
Sbjct: 182 ELPVWSHANVGGVPVSELVEKND-AYKQEELDQIVDDVKNAAYHIIEKKGATYYGVAMSL 240

Query: 274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHR 333
           A + ++I+ ++  I  VS    G YG D  DV++ +PA + RGG+ G+T ++LN++E  +
Sbjct: 241 ARITKAILHNENSILTVSTYLDGQYGAD--DVYIGVPAVVNRGGIAGITELNLNEKEKEQ 298

Query: 334 LRNSAKTILEVQ 345
             +SA  +  + 
Sbjct: 299 FLHSAGVLKNIL 310

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316

 Score =  471 bits (1216), Expect = e-169
 Identities = 117/314 (37%), Positives = 181/314 (57%), Gaps = 3/314 (0%)

Query: 34  TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTK 93
                ++ VIG G VG +    ++ Q   +E+ L+DA   K  G+ +D  H   F P+  
Sbjct: 3   NNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPV 62

Query: 94  ILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV 153
            +   DY     +DL ++ AGA Q  GE+RL+L+ +N+++F++I+  ++      + L+ 
Sbjct: 63  DIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVA 122

Query: 154 ANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDS 213
            NPVDILTY  WK SGLP  RVIGSGT LD++RFRFLL ++  V  Q+V AYI+GEHGD+
Sbjct: 123 TNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDT 182

Query: 214 SVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSA 273
            + +WS   +G +PI   +E +     ++ LE I   V D+AY++I  KG T + I    
Sbjct: 183 ELPVWSQAYIGVMPIRKLVESKGE-EAQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGL 241

Query: 274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHR 333
           A + R+I+ ++  I  VS    G YG    DV++ +PA + R G+  V  I LN +E +R
Sbjct: 242 ARVTRAILHNENAILTVSAYLDGLYGER--DVYIGVPAVINRNGIREVIEIELNDDEKNR 299

Query: 334 LRNSAKTILEVQSQ 347
             +SA T+  V ++
Sbjct: 300 FHHSAATLKSVLAR 313

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310

 Score =  471 bits (1214), Expect = e-168
 Identities = 125/311 (40%), Positives = 176/311 (56%), Gaps = 3/311 (0%)

Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
           K+ ++G+G VG A A  +       E+ LVD      +    D+ HA  F     + A  
Sbjct: 2   KVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAG- 60

Query: 99  DYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD 158
            Y    G+   ++ AG  Q  GE+RL LL RN  +F  ++P +++ +P+ +LL+  NPVD
Sbjct: 61  SYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD 120

Query: 159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
           ++T VA+ LSGLP  RV+GSGT LD++RFR LLA++L V  Q V AY++GEHGDS V +W
Sbjct: 121 VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180

Query: 219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLAR 278
           SS  VGGVP+L F E +  A   E    I + V  +AY +I  KG T + IG   A L R
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLVR 240

Query: 279 SIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA 338
           +I+ D++ ++ VS       G+   +V LSLP  LG GGV G     L+ EE   LR SA
Sbjct: 241 AILTDEKGVYTVSAFTPEVAGVL--EVSLSLPRILGAGGVAGTVYPSLSPEERAALRRSA 298

Query: 339 KTILEVQSQLG 349
           + + E    LG
Sbjct: 299 EILKEAAFALG 309

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317

 Score =  471 bits (1215), Expect = e-168
 Identities = 119/315 (37%), Positives = 193/315 (61%), Gaps = 4/315 (1%)

Query: 34  TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTK 93
             +  K+ +IG G VG + A +++ Q  V+EL ++D   +K+RG+++DL+HA  + P T 
Sbjct: 3   KFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTV 62

Query: 94  ILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV 153
            + + +Y+    +DL ++ AGA Q  GE+RL+L+ +NL +FK+I+  ++    D I L+ 
Sbjct: 63  RVKAGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVA 122

Query: 154 ANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDS 213
            NPVDIL Y  WK SGLP  RVIGSGT LDS+RFR LL++  DV  + V A I+GEHGD+
Sbjct: 123 TNPVDILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEHGDT 182

Query: 214 SVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSA 273
            + +WS  ++ G P+ + LE++     K  +E I  +  D+AY++I  KG T + +    
Sbjct: 183 ELPVWSHANIAGQPLKTLLEQRPE--GKAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGL 240

Query: 274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHR 333
           A +  +I R++  +  VS L +G Y  +  DV++ +PA + R G+  V  I LN EE  +
Sbjct: 241 ARITEAIFRNEDAVLTVSALLEGEYEEE--DVYIGVPAVINRNGIRNVVEIPLNDEEQSK 298

Query: 334 LRNSAKTILEVQSQL 348
             +SAKT+ ++ ++ 
Sbjct: 299 FAHSAKTLKDIMAEA 313

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326

 Score =  470 bits (1212), Expect = e-168
 Identities = 119/315 (37%), Positives = 198/315 (62%), Gaps = 4/315 (1%)

Query: 33  PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRT 92
             K H K+ ++G G VG + A  ++ Q   +E+ +VD   DK +G+ +DL +A  F    
Sbjct: 5   TDKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPK 64

Query: 93  KILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLI 152
           KI ++ +Y+    +DL ++TAGA Q  GE+RL+L+ +NL + K+I+ P+V    + I L+
Sbjct: 65  KIYSA-EYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLV 123

Query: 153 VANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
            ANPVDILTY  WKLSG P NRV+GSGT+LD++RFR  +A+ ++V+A+ V AYI+GEHGD
Sbjct: 124 AANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEHGD 183

Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS 272
           +   +WS  ++GGV I  +++      +++ L  + ++V D+AYE+I LKG T + I  +
Sbjct: 184 TEFPVWSHANIGGVTIAEWVKAHP-EIKEDKLVKMFEDVRDAAYEIIKLKGATFYGIATA 242

Query: 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
            A ++++I+ D+  + P+SV   G YG++  D+++  PA + R G+  +  I L   E  
Sbjct: 243 LARISKAILNDENAVLPLSVYMDGQYGLN--DIYIGTPAVINRNGIQNILEIPLTDHEEE 300

Query: 333 RLRNSAKTILEVQSQ 347
            ++ SA  + +V + 
Sbjct: 301 SMQKSASQLKKVLTD 315

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319

 Score =  468 bits (1206), Expect = e-167
 Identities = 117/310 (37%), Positives = 181/310 (58%), Gaps = 4/310 (1%)

Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
           KI ++G G VG + A  +L + F  E+ L+D    +  G+ LDL H   F  R  I A  
Sbjct: 2   KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG- 60

Query: 99  DYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD 158
           DYA   GSD+ IV AG  Q  GE+RL LL RN  + K I   + KY+PD I+++V NPVD
Sbjct: 61  DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120

Query: 159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
           +LTY   K SG+   +V GSGT LD++R R L+A H   + + V  Y++GEHGDS V +W
Sbjct: 121 VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVW 180

Query: 219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLAR 278
           S   +GG+P+ +  +  Q   + + LE+  ++   +AYE+I  KG T +AI  + A++  
Sbjct: 181 SGAMIGGIPLQNMCQVCQ-KCDSKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVE 239

Query: 279 SIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA 338
           SI  D++++  +SV  + + G+   D+ +S+P  LG+ GV  +  ++LN+EE    R SA
Sbjct: 240 SIFFDEKRVLTLSVYLEDYLGVK--DLCISVPVTLGKHGVERILELNLNEEELEAFRKSA 297

Query: 339 KTILEVQSQL 348
             +    +++
Sbjct: 298 SILKNAINEI 307

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  463 bits (1195), Expect = e-165
 Identities = 118/312 (37%), Positives = 188/312 (60%), Gaps = 5/312 (1%)

Query: 35  KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKI 94
             H K+ ++G G VG + A  +  Q   EE  +VD   D+ +G+ LDL+ A AF    KI
Sbjct: 3   PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKI 62

Query: 95  LASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154
            +  +Y+    +DL ++TAGA Q  GESRL+L+ +NL++  +I+ P+V    D I L+ A
Sbjct: 63  YSG-EYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121

Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
           NPVDILTY  WK SG P  RVIGSGT+LDSSR R  L    +V+ + V AYI+GEHGDS 
Sbjct: 122 NPVDILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGDSE 181

Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAA 274
            A +S+ ++G  P+    ++Q +    + L  +   V + AY++I+LKG T + IG +  
Sbjct: 182 FAAYSTATIGTRPVRDVAKEQGV--SDDDLAKLEDGVRNKAYDIINLKGATFYGIGTALM 239

Query: 275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRL 334
            ++++I+RD+  + PV     G YG++  D+++  PA +G  G+  +    L+ +E  ++
Sbjct: 240 RISKAILRDENAVLPVGAYMDGQYGLN--DIYIGTPAIIGGTGLKQIIESPLSADELKKM 297

Query: 335 RNSAKTILEVQS 346
           ++SA T+ +V +
Sbjct: 298 QDSAATLKKVLN 309

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304

 Score =  449 bits (1157), Expect = e-160
 Identities = 113/312 (36%), Positives = 178/312 (57%), Gaps = 9/312 (2%)

Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
           K+ V+GTG VG   A  ++ +    EL LVD   D+ + E  D+ HAA     T++    
Sbjct: 2   KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHG- 60

Query: 99  DYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD 158
            ++  A + + I+TAGA Q  GESRL+LL++N  +F+ ++P + + +PD +LL+ +NPVD
Sbjct: 61  GHSELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVD 120

Query: 159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
           +LT +A +L+  P   VIGSGT LDS+RFR L+A H  V+      Y++GEHGDS V  W
Sbjct: 121 LLTDLATQLA--PGQPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVLGEHGDSEVLAW 178

Query: 219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLAR 278
           SS  V G+P+  F++ Q + + ++    I +   ++A  +I  K  T + IG + A +  
Sbjct: 179 SSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIEGKRATYYGIGAALARITE 238

Query: 279 SIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA 338
           +++RD+R +  VS     +       V LSLP  +GR GVL   +  L  +E  +L  SA
Sbjct: 239 AVLRDRRAVLTVSAPTPEY------GVSLSLPRVVGRQGVLSTLHPKLTGDEQQKLEQSA 292

Query: 339 KTILEVQSQLGI 350
             +   + QLG+
Sbjct: 293 GVLRGFKQQLGL 304

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309

 Score =  439 bits (1132), Expect = e-156
 Identities = 90/314 (28%), Positives = 162/314 (51%), Gaps = 15/314 (4%)

Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
           KI +IG GNVG A+A  ++ Q   ++   +DA   K++ + +D Q A A L     +   
Sbjct: 3   KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIN 62

Query: 99  DYAVTAGSDLCIVTAG----ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154
           D+A  A +D+ I T G     +      R   L+   S+ +++   L +     +L++++
Sbjct: 63  DWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122

Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
           NPVD++T +   ++G P+++VIG+GT LD++R +  + +  D++ + V  Y +GEHG+S 
Sbjct: 123 NPVDVITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGNSQ 182

Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAA 274
              WS++ V G PI++  +          L +I +E     + V++ KGYTS+ +  SA 
Sbjct: 183 FVAWSTVRVMGQPIVTLADA-----GDIDLAAIEEEARKGGFTVLNGKGYTSYGVATSAI 237

Query: 275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRL 334
            +A++++ D      VS             ++LS PA +GR GVL  T + L  +E  +L
Sbjct: 238 RIAKAVMADAHAELVVS----NRRDDM--GMYLSYPAIIGRDGVLAETTLDLTTDEQEKL 291

Query: 335 RNSAKTILEVQSQL 348
             S   I +   ++
Sbjct: 292 LQSRDYIQQRFDEI 305

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303

 Score =  436 bits (1123), Expect = e-155
 Identities = 95/314 (30%), Positives = 161/314 (51%), Gaps = 15/314 (4%)

Query: 38  TKISVIGT-GNVGMAIAQTILTQDFVEELALVD--AKADKLRGEMLDLQHAAAFLPRTKI 94
           TK+SV+G  G VG A    I  +D  +E+  VD   K D   G+  D  H  A+   T++
Sbjct: 1   TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRV 60

Query: 95  LASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154
                Y  TAGSD+ ++TAG  +  G++R++L   N  + + I   L +++ D I L  +
Sbjct: 61  RQG-GYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119

Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
           NPVD+L    ++       +VIG G  LDS+RFR++L++  D   Q+V+  I+GEHGD+ 
Sbjct: 120 NPVDLLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQ 179

Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAA 274
           V ++S +SV G             +  +  E +  ++ +SA +VI  KG T W      A
Sbjct: 180 VPVFSKVSVDGTDPE---------FSGDEKEQLLGDLQESAMDVIERKGATEWGPARGVA 230

Query: 275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRL 334
           ++  +I+ D  ++ P SV  +G +G +  D    +P  LG  GV  +    L+  E   +
Sbjct: 231 HMVEAILHDTGEVLPASVKLEGEFGHE--DTAFGVPVSLGSNGVEEIVEWDLDDYEQDLM 288

Query: 335 RNSAKTILEVQSQL 348
            ++A+ + +   ++
Sbjct: 289 ADAAEKLSDQYDKI 302

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330

 Score =  428 bits (1103), Expect = e-151
 Identities = 150/350 (42%), Positives = 211/350 (60%), Gaps = 40/350 (11%)

Query: 18  TQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRG 77
           T    K I H A     + + KI+V+G   VGMA A ++L +D  +E+ALVD   DKL+G
Sbjct: 2   TALKDKLIGHLATSQEPRSYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKG 61

Query: 78  EMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAI 137
           EM+DL+H + FL   KI++  DY+V+AGS L ++TAGARQ  GESRLNL+QRN+++FK I
Sbjct: 62  EMMDLEHGSLFLHTAKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFI 121

Query: 138 IPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDV 197
           IP +VK+SPDC+  +            WKLSGLP +R+IGSG NLDS+RFR+L+ + L V
Sbjct: 122 IPNIVKHSPDCLKELHPELGTDKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGV 181

Query: 198 NAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYE 257
           ++  V  +++G+HGDS  ++WS +                         +HK+VVDSAYE
Sbjct: 182 HSCLVIGWVIGQHGDSVPSVWSGMWDAK---------------------LHKDVVDSAYE 220

Query: 258 VISLKGYTSWAIGY-----------------SAANLARSIIRDQRKIHPVSVLAKGFYGI 300
           VI LKGYTSWAIG                  S A+LA++I++D  ++HPVS + K FYGI
Sbjct: 221 VIKLKGYTSWAIGLVVSNPVDVLTYVAWKGCSVADLAQTIMKDLCRVHPVSTMVKDFYGI 280

Query: 301 DGGDVFLSLPAQLGRGGV-LGVTNIHLNQEESHRLRNSAKTILEVQSQLG 349
              +VFLSLP  L  G     +  + L  +E  +L+ SA T+ ++Q  L 
Sbjct: 281 K-DNVFLSLPCVLNNGISHCNIVKMKLKPDEEQQLQKSATTLWDIQKDLK 329

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294

 Score =  423 bits (1091), Expect = e-150
 Identities = 111/312 (35%), Positives = 169/312 (54%), Gaps = 21/312 (6%)

Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR-TKILAS 97
           K+  +G G VG   A T L    V+E+ALVD   D   GE +DL HAAA + +  KI+  
Sbjct: 2   KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG 61

Query: 98  VDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV 157
            DY++  GS++ +VTAG  +  G +RL+L  +N  + K I   +V+ +P+  +L+V NP+
Sbjct: 62  ADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPM 121

Query: 158 DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVAL 217
           D++TY+ WK SG P N V G G  LDS R +  L +    N    +A+I+GEHGDS    
Sbjct: 122 DVMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARN--IRRAWIIGEHGDSMFVA 179

Query: 218 WSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLA 277
            S     G                   E++  +V   A EVI  KG T +    +   + 
Sbjct: 180 KSLADFDGEVD---------------WEAVENDVRFVAAEVIKRKGATIFGPAVAIYRMV 224

Query: 278 RSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNS 337
           ++++ D  +I P S++ +G YGI+  +V + +PA+LG+ G   V +I L+ EE  +LRNS
Sbjct: 225 KAVVEDTGEIIPTSMILQGEYGIE--NVAVGVPAKLGKNGA-EVADIKLSDEEIEKLRNS 281

Query: 338 AKTILEVQSQLG 349
           AK + E   +LG
Sbjct: 282 AKILRERLEELG 293

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303

 Score =  419 bits (1079), Expect = e-148
 Identities = 103/322 (31%), Positives = 173/322 (53%), Gaps = 26/322 (8%)

Query: 30  PPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL 89
                K   KI+V+G G +G+A    I  +   + L L+D   +  +G  +DL+      
Sbjct: 7   ANHENKTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLS-EGTKGATMDLEIFNL-- 63

Query: 90  PRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCI 149
               +  S D + +A S + I T  +   + +S L+++Q N+ +F+A++P L  YS   +
Sbjct: 64  --PNVEISKDLSASAHSKVVIFTVNSLG-SSQSYLDVVQSNVDMFRALVPALGHYSQHSV 120

Query: 150 LLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGE 209
           LL+ + PV+I+TYV WKLS  P+NRVIG G NLDS R ++++ + L       + +++GE
Sbjct: 121 LLVASQPVEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGE 180

Query: 210 HGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAI 269
            G+  V  WS                    E+    +   ++ + A E++ +KG  SW++
Sbjct: 181 QGEDKVLTWSGQ------------------EEVVSHTSQVQLSNRAMELLRVKGQRSWSV 222

Query: 270 GYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQE 329
           G S A++  SI+ +++K+H VS LAKG+Y I+  +VFLSLP  LG  GV  V    L ++
Sbjct: 223 GLSVADMVDSIVNNKKKVHSVSALAKGYYDIN-SEVFLSLPCILGTNGVSEVIKTTLKED 281

Query: 330 ESH-RLRNSAKTILEVQSQLGI 350
               +L++SA +I  +Q QL +
Sbjct: 282 TVTEKLQSSASSIHSLQQQLKL 303

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314

 Score =  402 bits (1036), Expect = e-141
 Identities = 111/312 (35%), Positives = 185/312 (59%), Gaps = 11/312 (3%)

Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKILAS 97
           K++VIG GNVG  +A+ +  QD  +E+ +VD K    +G+ LD++ ++      T++  +
Sbjct: 2   KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGT 61

Query: 98  VDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV 157
            DY  T  SD+CI+TAG  +  G SR +LL +N  +   +    V+ SPD  +++VANP+
Sbjct: 62  NDYGPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPL 121

Query: 158 DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVAL 217
           D++TYVA++ SG P+NRV+G    LD+ RFR  +A+ LDV+ +DVQA ++G HGD+ V L
Sbjct: 122 DVMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGHGDTMVPL 181

Query: 218 WSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSW-AIGYSAANL 276
               +VGG+P+   +       +   +E I +    +  E++ L G ++W A G +AA +
Sbjct: 182 PRYTTVGGIPVPQLI-------DDARIEEIVERTKGAGGEIVDLMGTSAWYAPGAAAAEM 234

Query: 277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN 336
             +I++D ++I P +    G YG+D  D+F+ +P +LG GGV  V  + L+ +E  +L+ 
Sbjct: 235 TEAILKDNKRILPCAAYCDGEYGLD--DLFIGVPVKLGAGGVEEVIEVDLDADEKAQLKT 292

Query: 337 SAKTILEVQSQL 348
           SA  +      L
Sbjct: 293 SAGHVHSNLDDL 304

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310

 Score =  397 bits (1022), Expect = e-139
 Identities = 110/313 (35%), Positives = 175/313 (55%), Gaps = 12/313 (3%)

Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKILAS 97
           KI+VIG GNVG   A  +  +    EL L+D      +G+ LD+  +       TK+  S
Sbjct: 2   KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS 61

Query: 98  VDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV 157
            DYA TA SD+ I+TAG  +  G +R +LL +N  + K +   ++K+S + I+++V+NP+
Sbjct: 62  NDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPL 121

Query: 158 DILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVAL 217
           DI+T+VAW  SGLP  RVIG    LD++RFR  +A  L V+ QD+ A ++G HGD+ V +
Sbjct: 122 DIMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPV 181

Query: 218 WSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYSAAN 275
               +V G+PI   L         ET++ + +   +   E++    +G   +A   S   
Sbjct: 182 VKYTTVAGIPISDLL-------PAETIDKLVERTRNGGAEIVEHLKQGSAFYAPASSVVE 234

Query: 276 LARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLR 335
           +  SI+ D++++ P +V  +G YGID    F+ +P +LGR GV  +  I+L+Q +   L+
Sbjct: 235 MVESIVLDRKRVLPCAVGLEGQYGID--KTFVGVPVKLGRNGVEQIYEINLDQADLDLLQ 292

Query: 336 NSAKTILEVQSQL 348
            SAK + E    L
Sbjct: 293 KSAKIVDENCKML 305

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331

 Score =  379 bits (975), Expect = e-132
 Identities = 101/327 (30%), Positives = 169/327 (51%), Gaps = 14/327 (4%)

Query: 31  PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL- 89
           P+  +R  K+++IG+G +G  +      ++  + + L D       G+ LDL H  + + 
Sbjct: 3   PALVQRRKKVAMIGSGMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVVD 61

Query: 90  PRTKILASVDY-AVTAGSDLCIVTAGARQIAGE-----SRLNLLQRNLSLFKAIIPPLVK 143
               + A   Y A   G+D  IVTAG  ++ G+     SR +LL  N  + + I   + K
Sbjct: 62  TNVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKK 121

Query: 144 YSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQ 203
           Y P   +++V NP+D +  V  + SG+P+N + G    LDS RFR  +AD L V+ +DVQ
Sbjct: 122 YCPKTFIIVVTNPLDCMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181

Query: 204 AYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL-- 261
           A ++G HGD  V L   I+V G PI  F++   +   ++ LE I +    S  E++    
Sbjct: 182 ATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVT--EKQLEEIAEHTKVSGGEIVRFLG 239

Query: 262 KGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGV 321
           +G   +A   SA  +A S + D++++ P SV   G YG+   D+F+ LPA +G  G+  V
Sbjct: 240 QGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGLK--DMFIGLPAVIGGAGIERV 297

Query: 322 TNIHLNQEESHRLRNSAKTILEVQSQL 348
             + LN+EE  + + S   ++ +   +
Sbjct: 298 IELELNEEEKKQFQKSVDDVMALNKAV 324

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308

 Score =  373 bits (961), Expect = e-130
 Identities = 97/311 (31%), Positives = 163/311 (52%), Gaps = 12/311 (3%)

Query: 40  ISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKILASV 98
           I+++G G VGMA A  ++ +   ++L L+     K +GE LDL HAAA L    +I  S 
Sbjct: 2   ITILGAGKVGMATAVMLMMRG-YDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSN 60

Query: 99  DYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD 158
            Y    GSD+ +VTAG  +  G +R  LL+ N +    +   +  Y+ D I++I  NPVD
Sbjct: 61  SYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVD 120

Query: 159 ILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
            +TYV +K +G P  RVIG    LDS+R  + ++  L V+ + V A ++G HG     + 
Sbjct: 121 AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMHGQKMFPVP 180

Query: 219 SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSW-AIGYSAANLA 277
              SVGGVP+   +        KE +E +  E V++  ++  L+GY+S            
Sbjct: 181 RLSSVGGVPLEHLM-------SKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLVLTV 233

Query: 278 RSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNS 337
            +I RD ++I+P S+  +G YG +  D+   +PA +G+ G+  +  + L ++E  +   +
Sbjct: 234 EAIKRDSKRIYPYSLYLQGEYGYN--DIVAEVPAVIGKSGIERIIELPLTEDEKRKFDEA 291

Query: 338 AKTILEVQSQL 348
            + + ++   L
Sbjct: 292 VQAVKKLVETL 302

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317

 Score =  372 bits (959), Expect = e-130
 Identities = 96/316 (30%), Positives = 161/316 (50%), Gaps = 8/316 (2%)

Query: 36  RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKI 94
              KI+VIG+G +G  IA  +   + + ++ L D      +G+ LD+ H+       +K+
Sbjct: 3   ERRKIAVIGSGQIGGNIAYIVGKDN-LADVVLFDIAEGIPQGKALDITHSMVMFGSTSKV 61

Query: 95  LASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154
           + + DYA  +GSD+ I+TA       + R  LL  N  +  ++   + KY P+  ++ + 
Sbjct: 62  IGTDDYADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICIT 121

Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
           NP+D++     K+SGLP N+V G    LDSSRFR  +A H  VNA DV A ++G HGD  
Sbjct: 122 NPLDVMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGHGDGM 181

Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYS 272
           V   SS+SVGGVP+ SF+++  I   +E ++ I      +  EV      G   +A   +
Sbjct: 182 VPATSSVSVGGVPLSSFIKQGLI--TQEQIDEIVCHTRIAWKEVADNLKTGTAYFAPAAA 239

Query: 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
           A  +A + ++D++ + P S      YG+    +++ +P  +G+ GV  +  + L   E  
Sbjct: 240 AVKMAEAYLKDKKAVVPCSAFCSNHYGVK--GIYMGVPTIIGKNGVEDILELDLTPLEQK 297

Query: 333 RLRNSAKTILEVQSQL 348
            L  S   +  +   L
Sbjct: 298 LLGESINEVNTISKVL 313

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324

 Score =  366 bits (942), Expect = e-127
 Identities = 89/319 (27%), Positives = 170/319 (53%), Gaps = 8/319 (2%)

Query: 33  PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PR 91
            +    KI++IG+G +G  +A     ++ + ++ L D      +G+ LD+  ++      
Sbjct: 3   GSMARNKIALIGSGMIGGTLAHLAGLKE-LGDVVLFDIAEGTPQGKGLDIAESSPVDGFD 61

Query: 92  TKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILL 151
            K   + DYA   G+D+ IVTAG  +  G SR +LL  NL + + +   + KY+P+  ++
Sbjct: 62  AKFTGANDYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVI 121

Query: 152 IVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHG 211
            + NP+D + +   K SGLP+++V+G    LDS+RFR+ L++  +V+ +DV  +++G HG
Sbjct: 122 CITNPLDAMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLGGHG 181

Query: 212 DSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAI 269
           DS V L    +V G+P+   ++       ++ L+ I +   D   E++ L   G   +A 
Sbjct: 182 DSMVPLARYSTVAGIPLPDLVKMGWT--SQDKLDKIIQRTRDGGAEIVGLLKTGSAFYAP 239

Query: 270 GYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQE 329
             SA  +A S ++D++++ PV+    G YG+   D+++ +P  +G  GV  +  I L+++
Sbjct: 240 AASAIQMAESYLKDKKRVLPVAAQLSGQYGVK--DMYVGVPTVIGANGVERIIEIDLDKD 297

Query: 330 ESHRLRNSAKTILEVQSQL 348
           E  +   S  ++  +    
Sbjct: 298 EKAQFDKSVASVAGLCEAC 316

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328

 Score =  365 bits (940), Expect = e-127
 Identities = 91/316 (28%), Positives = 162/316 (51%), Gaps = 8/316 (2%)

Query: 36  RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR-TKI 94
              KIS+IG G +G  IA  +  +D + ++ + D      +G+ LDL H  A +    KI
Sbjct: 13  MRKKISIIGAGQIGSTIALLLGQKD-LGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKI 71

Query: 95  LASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154
               +Y     SD+ I+TAG  +    +R +LL  N  +  ++   + KY P+  ++ + 
Sbjct: 72  FGENNYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICIT 131

Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
           NP+D + Y   + SG+P+N+V G    LDS+RFR  L+  L V   DV A +VG HGD  
Sbjct: 132 NPLDAMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGGHGDEM 191

Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYS 272
           + L SS+++GG+ +  F+E+ +I      +  I K+      E++ L   G   +A   S
Sbjct: 192 IPLTSSVTIGGILLSDFVEQGKIT--HSQINEIIKKTAFGGGEIVELLKTGSAFYAPAAS 249

Query: 273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESH 332
           A  +A++ ++D + +   S    G Y ++  ++F+ +P  +G+ G+  V  ++L+ +E  
Sbjct: 250 AVAMAQAYLKDSKSVLVCSTYLTGQYNVN--NLFVGVPVVIGKNGIEDVVIVNLSDDEKS 307

Query: 333 RLRNSAKTILEVQSQL 348
               S ++I  +   L
Sbjct: 308 LFSKSVESIQNLVQDL 323

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309

 Score =  361 bits (930), Expect = e-125
 Identities = 97/315 (30%), Positives = 168/315 (53%), Gaps = 13/315 (4%)

Query: 37  HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKIL 95
             KIS+IG G VG   A  +  ++  + + L+D      +G+ LDL  A+       ++ 
Sbjct: 2   RKKISIIGAGFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVT 60

Query: 96  ASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN 155
            + +YA TA SD+ +VT+GA +  G SR +L++ N  + +A I      SP+ ++++V N
Sbjct: 61  GTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120

Query: 156 PVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSV 215
           P+D +TY+A ++SG P  RVIG    LD++R+R  +A    V+ +DVQA ++G HGD  V
Sbjct: 121 PLDAMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMV 180

Query: 216 ALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYSA 273
            L     + G+P+  F+         + L  I +       E+++L   G   +A   + 
Sbjct: 181 PLPRFSCISGIPVSEFI-------APDRLAQIVERTRKGGGEIVNLLKTGSAYYAPAAAT 233

Query: 274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHR 333
           A +  ++++D++++ PV+    G YG++  D++  +P  LG GGV  +  + LN+EE   
Sbjct: 234 AQMVEAVLKDKKRVMPVAAYLTGQYGLN--DIYFGVPVILGAGGVEKILELPLNEEEMAL 291

Query: 334 LRNSAKTILEVQSQL 348
           L  SAK +      L
Sbjct: 292 LNASAKAVRATLDTL 306

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322

 Score =  361 bits (929), Expect = e-125
 Identities = 97/320 (30%), Positives = 163/320 (50%), Gaps = 11/320 (3%)

Query: 35  KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTK 93
               KI ++G+G +G  +A  I+ ++ + ++ L D   +   G+ LD  H         K
Sbjct: 2   APKAKIVLVGSGMIGGVMATLIVQKN-LGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 60

Query: 94  ILASVDYAVTAGSDLCIVTAGARQIAGES-----RLNLLQRNLSLFKAIIPPLVKYSPDC 148
           +  S  Y   AG+D+ IVTAG  +  G+S     R +LL  N  +   I   + K  P+ 
Sbjct: 61  VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 120

Query: 149 ILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVG 208
            +++V NPVD++  +  + SG+P N++IG G  LD+SR ++ ++  L+V  +DV A+IVG
Sbjct: 121 FIIVVTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVG 180

Query: 209 EHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWA 268
            HG+  V L   I+VGG+P+  F+  + I      LE+I    V++A E+++L      A
Sbjct: 181 AHGNKMVLLKRYITVGGIPLQEFINNKLI--SDAELEAIFDRTVNTALEIVNLHASPYVA 238

Query: 269 IGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQ 328
              +   +A S ++D +K+   S L +G YG    D+F   P  LG  GV  V  + LN 
Sbjct: 239 PAAAIIEMAESYLKDLKKVLICSTLLEGQYGHS--DIFGGTPVVLGANGVEQVIELQLNS 296

Query: 329 EESHRLRNSAKTILEVQSQL 348
           EE  +   +      +++  
Sbjct: 297 EEKAKFDEAIAETKRMKALA 316

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313

 Score =  360 bits (927), Expect = e-125
 Identities = 93/317 (29%), Positives = 167/317 (52%), Gaps = 15/317 (4%)

Query: 39  KISVIG-TGNVGMAIAQTILTQDFVEELALVDAK--ADKLRGEMLDLQHAAAFLP-RTKI 94
           K+++IG +G VG A A  +  + F+++L L+  +   +KL G   D+  A A       I
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 95  LA--SVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLI 152
                 +  +   SD+ I+T+G  +  G SR++L + N  +       + +     I  +
Sbjct: 62  YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-V 120

Query: 153 VANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
           + NPVD++TY A   S    N+V G GT+LDS RF+  +A    V+  +V+  I+GEHGD
Sbjct: 121 ITNPVDVMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGD 180

Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS 272
           S V L S+ S+GG+PI  F       +++  ++ I ++V     ++I LKG + +    +
Sbjct: 181 SMVPLLSATSIGGIPIQKFER-----FKELPIDEIIEDVKTKGEQIIRLKGGSEFGPAAA 235

Query: 273 AANLARSIIRDQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEES 331
             N+ R I+ +++++  +S    G + GI   DV + +P ++GR G+  V +I L+++E 
Sbjct: 236 ILNVVRCIVNNEKRLLTLSAYVDGEFDGIR--DVCIGVPVKIGRDGIEEVVSIELDKDEI 293

Query: 332 HRLRNSAKTILEVQSQL 348
              R SA+ I +   ++
Sbjct: 294 IAFRKSAEIIKKYCEEV 310

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315

 Score =  355 bits (914), Expect = e-123
 Identities = 98/320 (30%), Positives = 167/320 (52%), Gaps = 15/320 (4%)

Query: 34  TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA--DKLRGEMLDLQHAAAFLP- 90
           T +  K+SVIG G  G   A  +  ++  + + LVD     +  +G+ LD+  A+     
Sbjct: 5   TIKRKKVSVIGAGFTGATTAFLLAQKELAD-VVLVDIPQLENPTKGKALDMLEASPVQGF 63

Query: 91  RTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCIL 150
              I+ + DYA TA SD+ ++TAG  +  G SR +L+  N  + K+I   + K+SP+ I+
Sbjct: 64  DANIIGTSDYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAII 123

Query: 151 LIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEH 210
           +++ NPVD +TY  +K +G P  RVIG    LD++RFR  +A  L+++ +D+  +++G H
Sbjct: 124 VVLTNPVDAMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLGGH 183

Query: 211 GDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWA 268
           GD  V L      GG+P+ + +        KE LE+I +       E++ L   G   +A
Sbjct: 184 GDDMVPLVRYSYAGGIPLETLI-------PKERLEAIVERTRKGGGEIVGLLGNGSAYYA 236

Query: 269 IGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQ 328
              S   +  +I++DQR++ P     +G YG    D++L +P  LG  G+  +  + L  
Sbjct: 237 PAASLVEMTEAILKDQRRVLPAIAYLEGEYGYS--DLYLGVPVILGGNGIEKIIELELLA 294

Query: 329 EESHRLRNSAKTILEVQSQL 348
           +E   L  S +++  V   L
Sbjct: 295 DEKEALDRSVESVRNVMKVL 314

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321

 Score =  354 bits (910), Expect = e-122
 Identities = 91/317 (28%), Positives = 165/317 (52%), Gaps = 9/317 (2%)

Query: 36  RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKI 94
              KI+++G GN+G  +A   L +  + ++ L D       G+ LDL           K+
Sbjct: 4   ARKKITLVGAGNIGGTLAHLALIKQ-LGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKV 62

Query: 95  LASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154
             + DY     SD+ IVTAG  +  G SR +LL  N+ + + +   +    P+  ++ + 
Sbjct: 63  RGTNDYKDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT 122

Query: 155 NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSS 214
           NP+DI+  +  K SG+P N+++G    LDS+RFR  LAD L+V+ Q VQAY++G HGD+ 
Sbjct: 123 NPLDIMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVMGGHGDTM 182

Query: 215 VALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYS 272
           V L    +V GV +   +++ ++  ++E L++I         E+++L   G   +A   +
Sbjct: 183 VPLTKMSNVAGVSLEQLVKEGKL--KQERLDAIVSRTRSGGGEIVALLKTGSAYYAPAAA 240

Query: 273 AANLARSIIRDQRKIHPVSV-LAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEES 331
              +A S ++D++ I P +  +  G YG+D  D+F+ +P ++   GV     + ++ +E 
Sbjct: 241 GIQMAESFLKDKKMILPCAAKVKAGMYGLD-EDLFVGVPTEISANGV-RPIEVEISDKER 298

Query: 332 HRLRNSAKTILEVQSQL 348
            +L+ S   I ++    
Sbjct: 299 EQLQVSINAIKDLNKAA 315

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343

 Score =  238 bits (609), Expect = 1e-76
 Identities = 69/315 (21%), Positives = 128/315 (40%), Gaps = 12/315 (3%)

Query: 39  KISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS 97
           K++++G  G +G  +AQT         L L D  A  L G   +++H            S
Sbjct: 10  KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF-TS 68

Query: 98  VDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV-ANP 156
                   +   + + GA +  G +R +LL+ N  +   +   +  Y PDC  +I+  NP
Sbjct: 69  DIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNP 128

Query: 157 VDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDV-QAYIVGEHGDSSV 215
            DI   V    SGL  ++V      LDS+R +  LA H  +    V      G HG+   
Sbjct: 129 ADITGLVTLIYSGLKPSQVTT-LAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGHGEQMA 187

Query: 216 ALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSW-AIGYSAA 274
              S+  V G P+   +   ++    E    + + VV     +I L+G +S+ +  Y + 
Sbjct: 188 VFASTAKVNGTPLTDLIGTDKL--TNEQWAELKQRVVKGGANIIKLRGRSSFQSPSYVSI 245

Query: 275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHL-NQEESHR 333
            + R+ +  +    P         G +   + +++   + + GV       L N+ E   
Sbjct: 246 EMIRAAMGGEAFRWPAGCYVNV-PGFE--HIMMAMETTITKDGVKHSDINQLGNEAERAA 302

Query: 334 LRNSAKTILEVQSQL 348
           L+ S   + +++ ++
Sbjct: 303 LKESYSHLAKLRDEV 317

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312

 Score =  171 bits (435), Expect = 4e-51
 Identities = 72/316 (22%), Positives = 135/316 (42%), Gaps = 31/316 (9%)

Query: 39  KISVIG-TGNVGMAIAQTILTQ-DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
           K++V+G  G +G A+A  + TQ     EL+L D  A    G  +DL H    +       
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDI-APVTPGVAVDLSHIPTAVKIKGFSG 60

Query: 97  SVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP 156
                   G+D+ +++AG  +  G  R +L   N  + K ++  + K  P   + I+ NP
Sbjct: 61  EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 157 VDILTYVAW----KLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGD 212
           V+    +A     K      N++ G  T LD  R    +A+       +V+  ++G H  
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTT-LDIIRSNTFVAELKGKQPGEVEVPVIGGHSG 179

Query: 213 SSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK-GYTS--WAI 269
            ++          +P+LS +    +++ ++ +  + K + ++  EV+  K G  S   ++
Sbjct: 180 VTI----------LPLLSQVPG--VSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227

Query: 270 GYSAANLARSIIR---DQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNI-H 325
           G +AA    S++R    ++ +   + +     G      F S P  LG+ GV    +I  
Sbjct: 228 GQAAARFGLSLVRALQGEQGVVECAYV----EGDGQYARFFSQPLLLGKNGVEERKSIGT 283

Query: 326 LNQEESHRLRNSAKTI 341
           L+  E + L     T+
Sbjct: 284 LSAFEQNALEGMLDTL 299

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329

 Score =  169 bits (430), Expect = 4e-50
 Identities = 59/327 (18%), Positives = 117/327 (35%), Gaps = 26/327 (7%)

Query: 34  TKRHTKISVIG-TGNVGMAIAQTI-----LTQDFVEELALVD----AKADKLRGEMLDLQ 83
            K   +++V G  G +  ++   I     L +D    L L++         L+G M+++ 
Sbjct: 2   AKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEID 61

Query: 84  HAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVK 143
             A  L       +        +D+ ++     +  G  R +LL+ N  +F      +  
Sbjct: 62  DCAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDA 121

Query: 144 Y-SPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDV 202
             S +  +L+V NP +   Y+A K +     +   +   LD +R    +A         +
Sbjct: 122 VASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSI 181

Query: 203 QAYIV-GEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL 261
           +   V G H  +  A +    + G  +   +       +    ++    V      +I  
Sbjct: 182 EKLFVWGNHSPTMYADYRYAQIDGASVKDMIND-----DAWNRDTFLPTVGKRGAAIIDA 236

Query: 262 KGYTSWAIGYSAAN-----LARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRG 316
           +G +S     SAAN     +   ++    K   + + + G YGI  G V    P     G
Sbjct: 237 RGVSSA---ASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEG-VIFGFPVTTENG 292

Query: 317 GVLGVTNIHLNQEESHRLRNSAKTILE 343
               V  + ++     R+  +   +LE
Sbjct: 293 EYKIVQGLSIDAFSQERINVTLNELLE 319

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314

 Score =  162 bits (411), Expect = 2e-47
 Identities = 57/317 (17%), Positives = 121/317 (38%), Gaps = 33/317 (10%)

Query: 39  KISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKILA 96
           K++V+G +G +G  ++  +     V  L L D       G   DL H       +  +  
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATVKGYLGP 59

Query: 97  SVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP 156
                   G D+ ++ AG  +  G +R +L   N ++   +     ++ PD ++ I++NP
Sbjct: 60  EQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP 119

Query: 157 VDILTYVAW----KLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEH-G 211
           V+    +      K      N++ G  T LD  R    +A+   ++   V   ++G H G
Sbjct: 120 VNSTIPITAEVFKKHGVYNPNKIFGVTT-LDIVRANAFVAELKGLDPARVSVPVIGGHAG 178

Query: 212 DSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK---GYTSWA 268
            + + L S  +                + ++ L ++   + ++  EV+  K   G  + +
Sbjct: 179 KTIIPLISQCTPKV------------DFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLS 226

Query: 269 IGYSAANLARSIIR---DQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNI- 324
           + Y+ A    S++     +  +   S +            + S P  LG+ G+     I 
Sbjct: 227 MAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCP----YFSTPLLLGKKGIEKNLGIG 282

Query: 325 HLNQEESHRLRNSAKTI 341
            ++  E   +  +   +
Sbjct: 283 KISPFEEKMIAEAIPEL 299

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326

 Score =  161 bits (410), Expect = 3e-47
 Identities = 74/327 (22%), Positives = 132/327 (40%), Gaps = 39/327 (11%)

Query: 32  SPTKRHTKISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA---- 86
                  K++++G  G +G  +A  +     V  L L D       G   D+ H      
Sbjct: 3   KGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAP--GVTADISHMDTGAV 60

Query: 87  --AFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY 144
              FL + +       A   G DL IV AG  +  G +R +L + N  + K +   + K 
Sbjct: 61  VRGFLGQQQ-----LEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKC 115

Query: 145 SPDCILLIVANPVDILTYVA----WKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQ 200
            P  I+ +++NPV+    +A     K       R++G    LD  R    +A+ L ++ +
Sbjct: 116 CPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTM-LDVVRANTFVAEVLGLDPR 174

Query: 201 DVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVIS 260
           DV   +VG H   ++          +P+LS ++    ++ +E +  +   + +   EV+ 
Sbjct: 175 DVDVPVVGGHAGVTI----------LPLLSQVKPPS-SFTQEEISYLTDRIQNGGTEVVE 223

Query: 261 LK-GYTS--WAIGYSAANLARSIIRDQRKIHPVSVLA--KGFYGIDGGDVFLSLPAQLGR 315
            K G  S   ++ Y+A   A + +R  R    V   A             F +   +LGR
Sbjct: 224 AKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQV---TELPFFASKVRLGR 280

Query: 316 GGVLGVTNI-HLNQEESHRLRNSAKTI 341
            G+  V ++  LN+ E   L  + K +
Sbjct: 281 NGIEEVYSLGPLNEYERIGLEKAKKEL 307

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333

 Score =  159 bits (403), Expect = 4e-46
 Identities = 64/322 (19%), Positives = 119/322 (36%), Gaps = 22/322 (6%)

Query: 39  KISVIG-TGNVGMAIAQTI-----LTQDFVEELALVDAK--ADKLRGEMLDLQHAAAFLP 90
           ++ V G  G +  ++  +I       +D    L L+D       L G +++LQ  A  L 
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL 64

Query: 91  RTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSP-DCI 149
           +  I    +       D+ I+     +  G  R +LL+ N+ +FK     L KY+     
Sbjct: 65  KDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVK 124

Query: 150 LLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIV-G 208
           +++V NP +     A K +           T LD +R +  +A  L V + DV+  I+ G
Sbjct: 125 VIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWG 184

Query: 209 EHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWA 268
            H  +     +   V        + +     +          V      VI  +  +S  
Sbjct: 185 NHSSTQYPDVNHAKVKLQAKEVGVYEAVKD-DSWLKGEFITTVQQRGAAVIKARKLSSA- 242

Query: 269 IGYSAANLARSIIRD------QRKIHPVSVLAKGF-YGIDGGDVFLSLPAQLGRGGVLGV 321
              SAA      +RD      + +   + +++ G  YG+    +  S P  +       V
Sbjct: 243 --MSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDD-LLYSFPVTIKDKTWKIV 299

Query: 322 TNIHLNQEESHRLRNSAKTILE 343
             + +N     ++  +AK + E
Sbjct: 300 EGLPINDFSREKMDLTAKELAE 321

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375

 Score =  154 bits (391), Expect = 6e-44
 Identities = 67/328 (20%), Positives = 115/328 (35%), Gaps = 27/328 (8%)

Query: 34  TKRHTKISVIG-TGNVGMAIAQTILT-----QDFVEELALVDAK--ADKLRGEMLDLQHA 85
            K+   I+V G  G +   +   + +     QD    L L+ ++     L G  ++L+ +
Sbjct: 29  WKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDS 88

Query: 86  AAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY- 144
              L R   +    Y V    D  ++     +  G  R  LL  N  +F      L    
Sbjct: 89  LYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVA 148

Query: 145 SPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQA 204
           S +  +L+V NP +    +  K +     +   + T LD +R +  LA    V    V  
Sbjct: 149 SKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSN 208

Query: 205 YIV-GEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKG 263
             + G H  + V  + +  + G P+     K+ I   K   E     V      +I   G
Sbjct: 209 VTIWGNHSTTQVPDFLNAKIDGRPV-----KEVIKRTKWLEEEFTITVQKRGGALIQKWG 263

Query: 264 YTSWAIGYSAANLARSIIR------DQRKIHPVSVLAKG-FYGIDGGDVFLSLPAQLGRG 316
            +S A   S A      I+       +       V   G  YGI    +  S+P +    
Sbjct: 264 RSSAA---STAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAED-IVFSMPCRSKGD 319

Query: 317 GVLG-VTNIHLNQEESHRLRNSAKTILE 343
           G     T++  +     R++ S   +L 
Sbjct: 320 GDYELATDVSNDDFLWERIKKSEAELLA 347

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327

 Score =  150 bits (382), Expect = 4e-43
 Identities = 74/325 (22%), Positives = 128/325 (39%), Gaps = 26/325 (8%)

Query: 35  KRHTKISVIG-TGNVGMAIAQTI-----LTQDFVEELALVD--AKADKLRGEMLDLQHAA 86
           K   +++V G  G +G ++   I     L +D    L L++       L G +++L+  A
Sbjct: 2   KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61

Query: 87  AFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSP 146
             L                +D  ++   A + AG  R +LLQ N  +F      L + + 
Sbjct: 62  FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121

Query: 147 -DCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAY 205
            D  +L+V NP +    +A+K +   + R   + T LD +R +  LA         ++  
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRM 181

Query: 206 IV-GEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGY 264
            V G H  +         V G P L  ++ +               V      +I  +G 
Sbjct: 182 TVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYEKVFI------PTVAQRGAAIIQARGA 235

Query: 265 TSWAIGYSAANLARSIIRD------QRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGV 318
           +S     SAAN A   IRD      +     ++V ++G YGI  G V+ S P     G  
Sbjct: 236 SSA---ASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVY-SFPVTAKDGAY 291

Query: 319 LGVTNIHLNQEESHRLRNSAKTILE 343
             V  + +N+    R+  +A+ +L+
Sbjct: 292 RVVEGLEINEFARKRMEITAQELLD 316

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 5e-11
 Identities = 44/261 (16%), Positives = 75/261 (28%), Gaps = 62/261 (23%)

Query: 81  DLQHAAAFLPRTKILA-SVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRN-LSLF-KAI 137
           + +   AF    KIL  +    VT   D                + L      SL  K +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVT---DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 138 ------IPPLV-KYSPDCILLIVAN-PVDILTYVAWKLSGLPS-NRVIGSG-TNLDSSRF 187
                 +P  V   +P  + +I  +    + T+  WK         +I S    L+ + +
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 188 R------FLLADHLDVNAQ------------DVQAYIVGEHGDSSVALWSSISVGGVPIL 229
           R       +      +               DV   +   H  S V      S   +P +
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431

Query: 230 SFLEKQQIAYEKETLESIHKEVVDSAYEVI-----------SLKGYTSWAIGY--SAANL 276
               K ++  E      +H+ +VD  Y +             L  Y    IG+       
Sbjct: 432 YLELKVKLENEYA----LHRSIVDH-YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486

Query: 277 A------RSIIRD----QRKI 287
                  R +  D    ++KI
Sbjct: 487 PERMTLFRMVFLDFRFLEQKI 507

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Length = 480

 Score = 52.6 bits (125), Expect = 8e-08
 Identities = 42/267 (15%), Positives = 78/267 (29%), Gaps = 43/267 (16%)

Query: 39  KISVIGTGNVGMA---IAQTILTQDF-VEELALVDAKADKLRGEMLDLQHAAAFL-PRTK 93
           KI +IG G+   +   ++    T       + L+D   ++L   +   +     +    K
Sbjct: 5   KIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLK 64

Query: 94  ILASVDY-AVTAGSDLCIVTA------------------GARQIAGESRLNLL------- 127
              +++   V   +D  I TA                  G  +       N++       
Sbjct: 65  FEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFS 124

Query: 128 -QRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSR 186
               L  F  I   + K SP    L  ANP+   T     ++     + +G         
Sbjct: 125 NYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGT---TLVTRTVPIKAVGFCHGHYGVM 181

Query: 187 FRFLLADHLDVNAQDVQAYIVG-EHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLE 245
               + + L +  + V   + G  HG       +     G      L+K      K+   
Sbjct: 182 E---IVEKLGLEEEKVDWQVAGVNHG----IWLNRFRYNGGNAYPLLDKWIEEKSKDWKP 234

Query: 246 SIHKEVVDSAYEVISLKGYTSWAIGYS 272
                   S   +   + Y    IG +
Sbjct: 235 ENPFNDQLSPAAIDMYRFYGVMPIGDT 261

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Length = 450

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 38/265 (14%), Positives = 91/265 (34%), Gaps = 35/265 (13%)

Query: 34  TKRHTKISVIGTGNVGMA---IAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP 90
           +    KI+ IG G+ G A   ++   + +     +AL D   +  + +   + + +    
Sbjct: 2   SLDQIKIAYIGGGSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQ-KNEVIGNHSGNGR 60

Query: 91  RTKILASVDY-AVTAGSDLCIVTA------------------GARQIAGE----SRLNLL 127
             +  A        + +D+ I++                   G  Q  G+      +   
Sbjct: 61  -WRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRG 119

Query: 128 QRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIG-----SGTNL 182
            R + +F  I   +  Y+P+  ++   NP+ + T V +K+   P  + IG      GT  
Sbjct: 120 LRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVF--PGIKAIGCCHEVFGTQK 177

Query: 183 DSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKE 242
             +              +D++  ++G +  + +   S   +  +PI             E
Sbjct: 178 LLAEMVTERLGIEVPRREDIRVNVLGINHFTWITKASYRHIDLLPIFREFSAHYGESGYE 237

Query: 243 TLESIHKEVVDSAYEVISLKGYTSW 267
                 ++ V  +   ++   + ++
Sbjct: 238 LEGECWRDSVFCSAHRVAFDLFETY 262

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Length = 472

 Score = 47.5 bits (112), Expect = 4e-06
 Identities = 32/212 (15%), Positives = 69/212 (32%), Gaps = 35/212 (16%)

Query: 34  TKRHTKISVIGTGNV---GMAIAQTILTQDF-VEELALVDAKADKLR--GEMLDLQHAAA 87
            K+   I + G G+    G+ +      ++F + +L L D   ++        D      
Sbjct: 25  KKKSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACD-VFIRE 83

Query: 88  FLPRTKILASVDY-AVTAGSDLCIVTAGARQIA--------------------GESRLNL 126
             P  +  A+ D        D  +      + A                    G   +  
Sbjct: 84  KAPDIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAY 143

Query: 127 LQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSR 186
             R++     I+  + KYSPD  +L  +NP  I+     +L   P+++++          
Sbjct: 144 GMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLR--PNSKILNICDMPV--G 199

Query: 187 FRFLLADHLDVNAQDVQAYIVGEHGDSSVALW 218
               +A  L ++++     +   +   +   W
Sbjct: 200 IEDRMAQILGLSSRK---EMKVRYYGLNHFGW 228

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A Length = 417

 Score = 46.7 bits (110), Expect = 5e-06
 Identities = 30/232 (12%), Positives = 71/232 (30%), Gaps = 35/232 (15%)

Query: 36  RHTKISVIG-----TGNVGMAIAQTILTQDF-VEELALVDAKADKLRGEMLDLQHAAAFL 89
           RH +I+VIG     T  +   +    +++D  ++E+   D   +K +  +  ++      
Sbjct: 1   RHMRIAVIGGGSSYTPELVKGLLD--ISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDR 58

Query: 90  PRTKILASVDYAVTAGSDLCIVTAG-------ARQIAGESRLNLLQRNLSLFKAI----- 137
            +  I  + + AV   +   I                   +  L+ +  +          
Sbjct: 59  FKVLISDTFEGAVV-DAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALR 117

Query: 138 -IPPLVKY------SPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFL 190
             P + +Y      + +  ++   NP   +T            + IG         F   
Sbjct: 118 AFPIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNYL--EYEKFIGLCNVPI--NFIRE 173

Query: 191 LADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKE 242
           +A+      +DV     G    + ++    + V G  +   + +        
Sbjct: 174 IAEMFSARLEDVFLKYYGL---NHLSFIEKVFVKGEDVTEKVFENLKLKLSN 222

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Length = 450

 Score = 46.7 bits (110), Expect = 6e-06
 Identities = 41/237 (17%), Positives = 73/237 (30%), Gaps = 37/237 (15%)

Query: 35  KRHTKISVIGTG--NVGMAIAQTILTQDF--VEELALVDAKADKLRGEMLDL---QHAAA 87
            +  KI+ IG G       +   I       V EL LVD    K + E++     +    
Sbjct: 5   DKRLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEK 64

Query: 88  FLPRTKILASVDY-AVTAGSDLCIVTAGA--------------------RQIAGESRLNL 126
                +I  ++D      G+D                            ++  G   L  
Sbjct: 65  AGVPIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFK 124

Query: 127 LQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSR 186
             R + +   II  + +  PD  L+   NP  ++T    + +     +V+G         
Sbjct: 125 GLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYT--KQEKVVGLCNV--PIG 180

Query: 187 FRFLLADHLDVNAQDVQAYIVG-EHGDSSVALWSSISVGGVPILSFLEKQQIAYEKE 242
            R  +A  L V+A  V     G  H          + + GV +   +       ++ 
Sbjct: 181 MRMGVAKLLGVDADRVHIDFAGLNHM----VFGLHVYLDGVEVTEKVIDLVAHPDRS 233

>1vjt_A Alpha-glucosidase; TM0752, structural genomics, JCSG, PSI, P structure initiative, joint center for structural genomics, hydrolase; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Length = 483

 Score = 45.7 bits (107), Expect = 1e-05
 Identities = 41/283 (14%), Positives = 83/283 (29%), Gaps = 51/283 (18%)

Query: 35  KRHTKISVIG------TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF 88
             H KIS+IG         +   IAQT         + ++D    +L    +  +     
Sbjct: 10  HHHMKISIIGAGSVRFALQLVGDIAQTEELSREDTHIYMMDVHERRLNASYILARKYVEE 69

Query: 89  LP----------RTKILASVDYAVTA--------------------------GSDLCIVT 112
           L             + +   D+ +                            G    I +
Sbjct: 70  LNSPVKIVKTSSLDEAIDGADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDS 129

Query: 113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPS 172
                ++  + +     ++ L   I   + K +P   L+  ANPV  +T    + +G   
Sbjct: 130 QELNMVSTYTYVLSSYPDMKLALEIAEKMKKMAPKAYLMQTANPVFEITQAVRRWTGA-- 187

Query: 173 NRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFL 232
             ++G           + + + LD++ ++V   + G    +     +     G      L
Sbjct: 188 -NIVGF---CHGVAGVYEVFEKLDLDPEEVDWQVAGV---NHGIWLNRFRYRGEDAYPLL 240

Query: 233 EKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAAN 275
           ++       E       +   S   +   K Y    IG +  N
Sbjct: 241 DEWIEKKLPEWEPKNPWDTQMSPAAMDMYKFYGMLPIGDTVRN 283

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	350
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	100.0
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	100.0
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	100.0
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	100.0
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	100.0
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	100.0
3tl2_A	315	Malate dehydrogenase; center for structural genomi	100.0
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	100.0
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	100.0
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	100.0
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	100.0
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	100.0
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	100.0
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	100.0
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	100.0
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	100.0
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	100.0
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	100.0
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	100.0
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	100.0
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	100.0
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	100.0
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	100.0
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	100.0
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	100.0
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	100.0
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	100.0
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	100.0
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	100.0
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	100.0
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	100.0
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	100.0
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	100.0
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	100.0
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	100.0
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	100.0
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	100.0
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	100.0
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	100.0
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	100.0
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	100.0
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	100.0
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	100.0
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	99.22
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	99.04
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.01
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.95
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.95
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	98.92
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.91
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.83
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.82
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.8
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.78
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	98.78
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.77
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.76
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.76
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.75
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.73
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.72
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.69
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.68
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.65
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.61
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.56
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	98.54
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	98.51
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	98.51
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.5
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.47
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	98.46
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	98.43
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.42
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.42
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	98.4
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	98.4
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.39
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.38
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.37
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.37
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	98.36
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	98.35
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.33
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	98.33
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.32
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	98.32
3qha_A	296	Putative oxidoreductase; seattle structural genomi	98.31
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.28
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	98.27
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.26
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	98.25
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	98.24
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	98.24
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	98.24
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	98.23
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.22
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	98.21
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	98.21
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.21
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.2
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.2
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	98.18
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	98.18
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	98.16
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.15
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	98.15
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	98.14
4ezb_A	317	Uncharacterized conserved protein; structural geno	98.13
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.12
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	98.12
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	98.11
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	98.1
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	98.1
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	98.09
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	98.07
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	98.05
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	98.03
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.02
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	98.02
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	98.0
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.99
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.97
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.96
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.96
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.95
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.93
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.93
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.92
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.88
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	97.87
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.85
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.82
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.81
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.7
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.7
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	97.68
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	97.68
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.67
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.64
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.64
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.63
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.63
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.6
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.59
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.59
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.58
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.56
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.56
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.54
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.54
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	96.66
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	97.5
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	97.5
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	97.49
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.49
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.49
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.49
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.47
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.47
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	97.46
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.46
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.43
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.42
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	97.4
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.39
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	97.37
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.36
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.35
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.35
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	97.35
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	97.34
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.32
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	97.32
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.31
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	97.31
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	97.31
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	97.29
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	97.29
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	97.28
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	97.22
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.22
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	97.22
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	97.19
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	97.19
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	97.18
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	97.18
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.18
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	97.17
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.17
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	97.15
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.15
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	97.13
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	97.11
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.11
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.1
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	97.09
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	97.04
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	97.04
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	97.03
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	97.02
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	97.02
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	97.02
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.02
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	97.01
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.01
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.0
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	97.0
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	96.99
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	96.99
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.99
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	96.99
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	96.99
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	96.99
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	96.98
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.97
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.96
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.95
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	96.95
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.94
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	96.94
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	96.93
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	96.93
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	96.92
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	96.92
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.92
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	96.9
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.88
3imf_A	257	Short chain dehydrogenase; structural genomics, in	96.88
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.87
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	96.87
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	96.87
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.87
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.87
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	96.85
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	96.85
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	96.84
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	96.84
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	96.84
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	96.83
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	96.83
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	96.83
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	96.82
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	96.82
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	96.81
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	96.81
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	96.8
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.79
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	96.79
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.78
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.78
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	96.77
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	96.77
4f6c_A	427	AUSA reductase domain protein; thioester reductase	96.76
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	96.76
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	96.76
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	96.74
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	96.74
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	96.73
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	96.73
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	96.72
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	96.72
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.72
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	96.71
1xhl_A	297	Short-chain dehydrogenase/reductase family member	96.71
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	96.71
2duw_A	145	Putative COA-binding protein; ligand binding prote	96.7
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	96.7
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	96.69
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.69
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	96.69
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	96.69
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	96.69
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	96.68
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	96.68
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	96.68
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	96.68
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	96.68
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	96.68
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	96.66
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	96.66
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	96.66
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.66
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	96.66
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.66
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	96.65
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	96.64
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	96.64
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	96.64
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	96.64
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	96.62
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	96.62
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.61
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	96.61
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	96.61
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	96.61
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.61
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.61
3cxt_A	291	Dehydrogenase with different specificities; rossma	96.6
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.6
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	96.6
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	96.59
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	96.58
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	96.58
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	96.58
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	96.58
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	96.58
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	96.57
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	96.57
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	96.57
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	96.57
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.57
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	96.56
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	96.56
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	96.54
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	96.54
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	96.54
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.53
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	96.53
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	96.53
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	96.53
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	96.53
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	96.52
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	96.52
1xq1_A	266	Putative tropinone reducatse; structural genomics,	96.52
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	96.51
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	96.51
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.5
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	96.5
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	96.49
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	96.48
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	96.48
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	96.48
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	96.48
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	96.47
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	96.47
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	96.47
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	96.47
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	96.46
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	96.46
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	96.46
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	96.45
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	96.45
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	96.44
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	96.44
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	96.44
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.44
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	96.43
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	96.43
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.43
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.43
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	96.43
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	96.43
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	96.42
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	96.42
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	96.42
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	96.42
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	96.41
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	96.41
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	96.41
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.41
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	96.41
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	96.41
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	96.4
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	96.4
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	96.4
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	96.4
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	96.39
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	96.38
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.38
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	96.38
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	96.38
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.38
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	96.38
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.37
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.37
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	96.37
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	96.37
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	96.36
1xkq_A	280	Short-chain reductase family member (5D234); parra	96.36
1spx_A	278	Short-chain reductase family member (5L265); paral	96.36
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	96.36
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	96.36
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	96.35
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	96.35
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	96.35
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	96.34
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	96.34
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	96.33
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	96.33
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	96.31
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	96.31
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	96.31
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	96.3
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	96.3
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	96.3
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.29
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	96.29
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	96.28
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	96.28
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	96.28
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.28
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	96.28
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	96.27
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	96.27
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	96.27
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	96.26
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.25
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	96.25
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	96.24
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	96.24
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	96.24
4dqx_A	277	Probable oxidoreductase protein; structural genomi	96.23
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	96.23
1ydw_A	362	AX110P-like protein; structural genomics, protein	96.22
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.21
3rih_A	293	Short chain dehydrogenase or reductase; structural	96.19
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	96.19
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	96.18
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.17
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.17
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	96.16
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	96.16
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	96.15
4had_A	350	Probable oxidoreductase protein; structural genomi	96.15
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	96.14
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.14
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	96.14
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	96.13
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	96.13
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	96.12
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.11
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	96.11
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.11
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	96.11
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	96.11
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	96.1
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	96.1
4f6l_B	508	AUSA reductase domain protein; thioester reductase	96.1
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	96.1
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	96.09
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	96.09
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	96.09
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	96.09
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	96.08
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	96.08
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	96.08
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	96.06
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	96.05
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	96.05
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	96.04
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	96.04
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	96.03
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	96.03
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.03
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	96.02
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	95.99
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	95.99
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	95.99
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	95.98
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	95.98
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	95.98
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.98
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	95.97
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	95.97
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	95.97
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	95.97
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	95.96
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	95.94
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	95.92
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	95.9
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	95.89
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	95.89
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	95.89
4hb9_A	412	Similarities with probable monooxygenase; flavin,	95.88
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	95.88
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	95.88
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	95.87
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	95.87
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	95.87
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	95.86
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	95.86
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	95.86
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	95.85
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	95.82
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	95.81
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	95.8
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	95.79
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	95.77
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	95.75
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	95.75
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	95.75
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	95.75
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	95.75
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	95.73
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	95.73
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.71

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=100.00  E-value=3.4e-73  Score=540.65  Aligned_cols=316  Identities=56%  Similarity=0.928  Sum_probs=296.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEec
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTA  113 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~  113 (350)
                      ..+.+||+|||||.||+++++.|+..+++++|+|+|++++++++.++||+|+.++....++..++|+++++|||+||+++
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~~~~~aDiVvi~a   95 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSKLVIITA   95 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGGGGTTEEEEEECC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHHHhCCCCEEEEcc
Confidence            45678999999999999999999999988999999999999999999999987665556677788899999999999999


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHH
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLAD  193 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~  193 (350)
                      |.|++||++|+|++.+|+++++++++.|.++||++|++++|||+|++|++++|++++|++||||+||.||+.|+++++|+
T Consensus        96 G~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvdi~t~~~~k~sg~p~~rviG~gt~LD~~R~~~~la~  175 (331)
T 4aj2_A           96 GARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGE  175 (331)
T ss_dssp             SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHHHHHHHHHH
T ss_pred             CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHHhCCCHHHEEeeccccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHH
Q 018760          194 HLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSA  273 (350)
Q Consensus       194 ~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~  273 (350)
                      ++|++|++|+++||||||++++|+||+++|+|+|+.+++++....+++++++++.+++++++++|++.||+++|++|+++
T Consensus       176 ~lgv~~~~V~~~ViGeHG~s~vp~~S~~~v~G~p~~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~kg~t~~a~a~a~  255 (331)
T 4aj2_A          176 RLGVHPLSCHGWVLGEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLKGYTSWAIGLSV  255 (331)
T ss_dssp             HHTSCGGGCBCCEEBCSSTTCEECGGGCEETTEEHHHHCTTTTSTTCTTCTHHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HhCCCHHHCEEeEEecCCCceeEeeecCeECCEEHHHHHhhccCCCCHHHHHHHHHHHHHhHHHHhhcCCCCchhHHHHH
Confidence            99999999999999999999999999999999999988754322355677889999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHhCC
Q 018760          274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI  350 (350)
Q Consensus       274 ~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~~~  350 (350)
                      ++++++|++|++.++|++++++|+||++ +++|||+||++|++|++++.+++|+++|+++|++|++.|++.++.+.+
T Consensus       256 a~~~~ail~d~~~~~~vs~~~~g~ygi~-~~v~~s~P~~lg~~Gv~~iv~l~L~~~E~~~l~~s~~~l~~~~~~~~~  331 (331)
T 4aj2_A          256 ADLAESIMKNLRRVHPISTMIKGLYGIK-EDVFLSVPCILGQNGISDVVKVTLTPDEEARLKKSADTLWGIQKELQF  331 (331)
T ss_dssp             HHHHHHHHTTCCEEEEEEEECTTGGGCC-SCCEEEEEEEEETTEEEEEECCCCCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCccCCc-CceEEEEEEEEcCCeeEEEccCCCCHHHHHHHHHHHHHHHHHHhhcCC
Confidence            9999999999999999999999999997 589999999999999999999999999999999999999998887653

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=3.7e-72  Score=532.53  Aligned_cols=312  Identities=38%  Similarity=0.715  Sum_probs=273.7

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEe
Q 018760           33 PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVT  112 (350)
Q Consensus        33 ~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~  112 (350)
                      .+++++||+|||||.||+++++.|+..+++++|+|+|++++++++.++||+|..++....++. +.++++++|||+||++
T Consensus         5 ~~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~-~~~~~a~~~aDiVvi~   83 (326)
T 3vku_A            5 TDKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIY-SAEYSDAKDADLVVIT   83 (326)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEE-ECCGGGGTTCSEEEEC
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEE-ECcHHHhcCCCEEEEC
Confidence            456778999999999999999999999998999999999999999999999987654455555 4568999999999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHH
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLA  192 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la  192 (350)
                      +|.|++||++|.|++.+|+++++++++.|.++||++|++++|||+|++|++++|++++|++||||+||.||+.|+++++|
T Consensus        84 ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNPvdi~t~~~~k~~g~p~~rviG~gt~LD~~R~~~~la  163 (326)
T 3vku_A           84 AGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIA  163 (326)
T ss_dssp             CCCC----------------CHHHHHHHHHTTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHHHHHHHHH
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCchHHHHHHHHHhcCCCHHHeeeecccCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHH
Q 018760          193 DHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS  272 (350)
Q Consensus       193 ~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a  272 (350)
                      +++|++|++|+++||||||+++||+||+++|+|+|+.+++.+... ++++.++++.+++++++++|++.||+++|++|.+
T Consensus       164 ~~lgv~~~~V~~~ViGeHGdt~vp~~S~a~v~g~pl~~~~~~~~~-~~~~~~~~i~~~v~~~g~eIi~~kG~t~~a~a~a  242 (326)
T 3vku_A          164 KMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPE-IKEDKLVKMFEDVRNKAYEIIKLKGATFYGIATA  242 (326)
T ss_dssp             HHHTSCGGGEECCEEBSSSTTCEECGGGCEETTEEHHHHHHHCTT-SCHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHhCCCHHHCeEEEEcCCCCeeEEeeeccccCCEEHHHHhccccC-CCHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHH
Confidence            999999999999999999999999999999999999988765321 4677889999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018760          273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL  348 (350)
Q Consensus       273 ~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~  348 (350)
                      +++++++|++|++.++|++++++|+||++  ++|||+||++|++|++++.+++|+++|+++|++|++.|++.++++
T Consensus       243 ~~~~~~ail~~~~~v~~~s~~~~g~yg~~--~v~~s~P~~lg~~Gv~~iv~l~L~~~E~~~l~~sa~~L~~~~~~~  316 (326)
T 3vku_A          243 LARISKAILNDENAVLPLSVYMDGQYGLN--DIYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLKKVLTDA  316 (326)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEEEEEGGGEE--EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHhcCCCceEEEEeeccCccCCC--ceEEEEEEEEcCCceEEEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999995  899999999999999999999999999999999999999988765

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=100.00  E-value=1.8e-71  Score=528.39  Aligned_cols=313  Identities=39%  Similarity=0.699  Sum_probs=293.7

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEEEE
Q 018760           33 PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLCIV  111 (350)
Q Consensus        33 ~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiVIi  111 (350)
                      |+++++||+|||||.||+++++.|+..+++++|+|+|++++++++.++||+|..++. ...++. +++++++++||+||+
T Consensus         1 m~~~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~-~~~~~a~~~aDvVvi   79 (326)
T 3pqe_A            1 MNKHVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTS-YGTYEDCKDADIVCI   79 (326)
T ss_dssp             -CCSCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEE-EECGGGGTTCSEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEE-eCcHHHhCCCCEEEE
Confidence            345678999999999999999999999988899999999999999999999986554 344554 557899999999999


Q ss_pred             ecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHH
Q 018760          112 TAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLL  191 (350)
Q Consensus       112 ~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~l  191 (350)
                      ++|.|++||++|.|++.+|+++++++++.|.++||++|++++|||+|++|++++|++|+|++||||+||.||+.|+++++
T Consensus        80 ~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPvd~~t~~~~k~~g~p~~rviG~gt~LD~~R~~~~l  159 (326)
T 3pqe_A           80 CAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVDILTYATWKFSGLPKERVIGSGTTLDSARFRFML  159 (326)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHHHHHHHH
T ss_pred             ecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChHHHHHHHHHHhcCCCHHHEEeeccccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHH
Q 018760          192 ADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGY  271 (350)
Q Consensus       192 a~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~  271 (350)
                      |+++|++|++|+++||||||++++|+||+++|+|+|+.+++++... ++++.++++.+++++++++|++.||+++|++|.
T Consensus       160 a~~lgv~~~~V~~~V~GeHG~t~vp~~S~~~v~g~p~~~~~~~~~~-~~~~~~~~i~~~v~~~g~eIi~~kG~t~~a~a~  238 (326)
T 3pqe_A          160 SEYFGAAPQNVCAHIIGEHGDTELPVWSHANVGGVPVSELVEKNDA-YKQEELDQIVDDVKNAAYHIIEKKGATYYGVAM  238 (326)
T ss_dssp             HHHHTCCGGGEECCEEBSSSTTCEECGGGCEETTEEHHHHHHTCTT-SCHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHhCCCHHHceeeeeecCCCceeeeeeeeeECCEEHHHHhhcccC-CCHHHHHHHHHHHHhhhheeeeCCCCcHHHHHH
Confidence            9999999999999999999999999999999999999988764321 467888999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHhC
Q 018760          272 SAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLG  349 (350)
Q Consensus       272 a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~~  349 (350)
                      ++++++++|++|++.++|++++++|+||++  ++|||+||++|++|++++.+++|+++|+++|++|++.|++.++++.
T Consensus       239 a~~~~~~ail~~~~~v~~~s~~~~g~yg~~--~v~~s~P~~lg~~Gv~~iv~l~L~~~E~~~l~~s~~~l~~~~~~~~  314 (326)
T 3pqe_A          239 SLARITKAILHNENSILTVSTYLDGQYGAD--DVYIGVPAVVNRGGIAGITELNLNEKEKEQFLHSAGVLKNILKPHF  314 (326)
T ss_dssp             HHHHHHHHHHTTCCEEECCEEEEESGGGCE--EEEEECCEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHhcCCCcEEEEEEeeccccCCC--ceEEEEEEEEcCCceEEEecCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999996  8999999999999999999999999999999999999999998875

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=100.00  E-value=5.6e-70  Score=515.68  Aligned_cols=302  Identities=36%  Similarity=0.662  Sum_probs=279.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEEEEecCCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiVIi~~g~~  116 (350)
                      |||+|||||.||+++++.|+..+++++|+|+|++++++++.++||+|...+. ...++..++++++++|||+||+++|.|
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~   80 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP   80 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence            7999999999999999999999988899999999999999999999987532 345777667789999999999999999


Q ss_pred             cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcC
Q 018760          117 QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLD  196 (350)
Q Consensus       117 ~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~  196 (350)
                      ++||++|.|++.+|+++++++++.|.++||++|++++|||+|++|++++|++|+|++||||+||.||+.|+++++|+++|
T Consensus        81 ~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~~k~~g~p~~rviG~~t~LD~~R~~~~la~~lg  160 (314)
T 3nep_X           81 RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELD  160 (314)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSHHHHHHHHHHHHTCCGGGEEECCHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCchhHHHHHHHHhcCCChHHEEeecCchHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999889999999999999999


Q ss_pred             CCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcC-CcchHHHHHHHH
Q 018760          197 VNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKG-YTSWAIGYSAAN  275 (350)
Q Consensus       197 v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg-~~~~~~a~a~~~  275 (350)
                      ++|++|+++||||||++++|+||+++|+|+|+.+++       +++.++++.+++++++++|++.|| +++|++|.++++
T Consensus       161 v~~~~v~~~ViG~Hg~t~vp~~S~~~v~g~p~~~~~-------~~~~~~~i~~~v~~~g~eIi~~kg~sa~~a~a~a~~~  233 (314)
T 3nep_X          161 VSVRDVQALLMGGHGDTMVPLPRYTTVGGIPVPQLI-------DDARIEEIVERTKGAGGEIVDLMGTSAWYAPGAAAAE  233 (314)
T ss_dssp             CCGGGEEEEEEESSGGGEEEEEEEEEETTEEGGGTS-------CHHHHHHHHHHHHTHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred             cCHHHeEEEEECCCCCcEEeeeecCeECcEehhhcc-------CHHHHHHHHHHHHHhHHHHHhccCCcHHHHHHHHHHH
Confidence            999999999999999999999999999999998765       355678999999999999999998 789999999999


Q ss_pred             HHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018760          276 LARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL  348 (350)
Q Consensus       276 ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~  348 (350)
                      ++++|+++++.++|++++++|+||++  ++|||+||++|++||+++.+++|+++|+++|++|++.|++.++++
T Consensus       234 ~~~ail~~~~~v~~~s~~~~g~yg~~--~~~~s~P~~lg~~Gv~~v~~l~L~~~E~~~l~~s~~~l~~~~~~~  304 (314)
T 3nep_X          234 MTEAILKDNKRILPCAAYCDGEYGLD--DLFIGVPVKLGAGGVEEVIEVDLDADEKAQLKTSAGHVHSNLDDL  304 (314)
T ss_dssp             HHHHHHHTCCEEEEEEEEEESGGGCE--EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCeEEEEEEEeccccCCC--ceEEEEEEEEeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999994  899999999999999999999999999999999999999998875

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=100.00  E-value=7.8e-70  Score=509.30  Aligned_cols=293  Identities=38%  Similarity=0.585  Sum_probs=275.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEEEEecCCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiVIi~~g~~  116 (350)
                      |||+|||||+||+++|+.|+.+++++||+|+|++++++++.++||+|+.++. ...++..++|+++++|||+||+++|.|
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitAG~p   80 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA   80 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEecCCC
Confidence            7999999999999999999999999999999999999999999999987643 356788788999999999999999999


Q ss_pred             cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcC
Q 018760          117 QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLD  196 (350)
Q Consensus       117 ~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~  196 (350)
                      ++||++|+|++..|++|++++++.|.++||+++++++|||+|++|++++|.+|+|++|+||+||.||++|+++++++.++
T Consensus        81 rkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNPvd~~t~i~~k~sg~p~~rvig~gT~LDs~R~~~~l~~~~~  160 (294)
T 2x0j_A           81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGA  160 (294)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHHHHHSSCCTTSEEECCHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCcchhhHHhhHHHcCCChhhEEEeeeEEeHHHHHHHHhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHHHHH
Q 018760          197 VNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANL  276 (350)
Q Consensus       197 v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~~~i  276 (350)
                      +++.  +++|||+||++++|+||+++++|.+.               ++++.++++.+++||++.||+++|++|.+++++
T Consensus       161 ~~~~--~~~V~G~HGdt~vp~~S~~~v~g~~~---------------~~~i~~~~~~~g~eIi~~kGst~~a~a~a~~~~  223 (294)
T 2x0j_A          161 RNIR--RAWIIGEHGDSMFVAKSLADFDGEVD---------------WEAVENDVRFVAAEVIKRKGATIFGPAVAIYRM  223 (294)
T ss_dssp             EEEC--CCCEEBCSSTTCEECGGGCCEESCCC---------------HHHHHHHHHTHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             CCcc--eeEEEecCCCcEEEeeeccCCCCchh---------------HHHHHHHHhhhheEEEecCcccchhHHHHHHHH
Confidence            7654  57899999999999999999988542               345667789999999999999999999999999


Q ss_pred             HHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHhCC
Q 018760          277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI  350 (350)
Q Consensus       277 i~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~~~  350 (350)
                      +++|++|++.++|++++++|+||++  ++|||+||++|++||+ +.+++|+++|+++|++|++.||+.+++|++
T Consensus       224 ~~ail~d~~~v~~~s~~l~g~yG~~--~v~~s~P~~lg~~Gve-i~~l~L~~~E~~~l~~s~~~lk~~i~~lg~  294 (294)
T 2x0j_A          224 VKAVVEDTGEIIPTSMILQGEYGIE--NVAVGVPAKLGKNGAE-VADIKLSDEEIEKLRNSAKILRERLEELGY  294 (294)
T ss_dssp             HHHHHTTCCCEEEEEEEEESGGGCE--EEEEEEEEEEETTEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHcCCCcEEEEEEEEecCCCCc--cEEEEEEEEEeCCEEE-EeCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999995  8999999999999996 788999999999999999999999999986

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=100.00  E-value=1.4e-69  Score=514.94  Aligned_cols=307  Identities=30%  Similarity=0.534  Sum_probs=289.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEEEEecCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLCIVTAGA  115 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiVIi~~g~  115 (350)
                      ++||+|||||.||+++++.|+..++. +|+|+|++++++++.++|++|...+. ...++..++++++++|||+||+++|.
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~-~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag~   83 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLG-DVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGV   83 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCc-eEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCCc
Confidence            57999999999999999999999986 99999999999999999999976432 35677777789999999999999999


Q ss_pred             CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHc
Q 018760          116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHL  195 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l  195 (350)
                      |++||++|.|++.+|+++++++++.|.++||++++|++|||+|++|++++|++++|++||||+||.||+.|+++++|+++
T Consensus        84 p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~~k~sg~p~~rviG~~~~LD~~R~~~~la~~l  163 (321)
T 3p7m_A           84 PRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLDIMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADEL  163 (321)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEEECHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHHHHhcCCCHHHEEeeccchHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999977999999999999999


Q ss_pred             CCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHh--cCCcchHHHHHH
Q 018760          196 DVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYSA  273 (350)
Q Consensus       196 ~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~--kg~~~~~~a~a~  273 (350)
                      |++|++|+++||||||++++|+||+++|+|+|+.+++..  .|+++++++++.+++++++++|++.  ||+++||+|.++
T Consensus       164 ~v~~~~v~~~v~G~HG~t~~p~~s~~~v~g~p~~~~~~~--~~~~~~~~~~i~~~v~~~g~eIi~~~g~gsa~~~~a~a~  241 (321)
T 3p7m_A          164 NVSVQQVQAYVMGGHGDTMVPLTKMSNVAGVSLEQLVKE--GKLKQERLDAIVSRTRSGGGEIVALLKTGSAYYAPAAAG  241 (321)
T ss_dssp             TCCGGGEECCEEECSGGGEEECTTTCEETTEEHHHHHHT--TSSCHHHHHHHHHHHHTHHHHHHHHHSSSCCCHHHHHHH
T ss_pred             CcCHHHceEeeecCcCCceeeeeeeceECCEehhhhccc--cCCCHHHHHHHHHHHHhhhHHHHHhcCCCChHHHHHHHH
Confidence            999999999999999999999999999999999988743  3789999999999999999999984  568889999999


Q ss_pred             HHHHHHHHhcCCCeEEEEEEec-cccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018760          274 ANLARSIIRDQRKIHPVSVLAK-GFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL  348 (350)
Q Consensus       274 ~~ii~ai~~~~~~v~~v~v~~~-g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~  348 (350)
                      ++++++|++|++.++|++++++ |+||++ +++|||+||++|++||+++ +++|+++|+++|++|++.|++.++++
T Consensus       242 ~~~~~ail~~~~~v~~~s~~~~~g~ygi~-~~v~~s~P~~~g~~Gv~~v-~l~L~~~E~~~l~~s~~~l~~~~~~~  315 (321)
T 3p7m_A          242 IQMAESFLKDKKMILPCAAKVKAGMYGLD-EDLFVGVPTEISANGVRPI-EVEISDKEREQLQVSINAIKDLNKAA  315 (321)
T ss_dssp             HHHHHHHHTTCCEEEEEEEEECTTGGGCS-SCEEEEEEEEEETTEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcEEEEEEEccCcccCCC-CCeEEEEEEEEcCCEEEEe-CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999 999998 5899999999999999999 99999999999999999999999875

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=100.00  E-value=1.2e-69  Score=513.99  Aligned_cols=306  Identities=32%  Similarity=0.564  Sum_probs=288.2

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC--ccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEE
Q 018760           33 PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK--ADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLC  109 (350)
Q Consensus        33 ~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~--~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiV  109 (350)
                      |+.+.+||+|||||.||+++++.|+..++ ++|+|+|++  ++++++.++|+.|..++. ...++..+++++++++||+|
T Consensus         4 m~~~~~kv~ViGaG~vG~~ia~~l~~~g~-~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvV   82 (315)
T 3tl2_A            4 MTIKRKKVSVIGAGFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVV   82 (315)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEE
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCC-CeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEE
Confidence            44566899999999999999999999998 899999999  788999999999986433 35678877889999999999


Q ss_pred             EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHH
Q 018760          110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRF  189 (350)
Q Consensus       110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~  189 (350)
                      |+++|.|++||++|.|++.+|+++++++++.+.++||++|++++|||+|++|++++|++|+|++||||+||.||+.|+++
T Consensus        83 Iiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNPvd~~t~~~~k~sg~p~~rviG~gt~LD~~R~~~  162 (315)
T 3tl2_A           83 VITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDAMTYSVFKEAGFPKERVIGQSGVLDTARFRT  162 (315)
T ss_dssp             EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECCHHHHHHHHHH
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCChHHHHHHHHHHhcCCChHHEEeeccCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHH--hcCCcch
Q 018760          190 LLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVIS--LKGYTSW  267 (350)
Q Consensus       190 ~la~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~--~kg~~~~  267 (350)
                      ++|+++|++|++|+++||||||++++|+||+++|+|+|+.+++       +++.++++.+++++++++|++  +||+++|
T Consensus       163 ~la~~lgv~~~~v~~~viG~Hg~t~vp~~S~~~v~g~p~~~~~-------~~~~~~~i~~~v~~~g~eii~~~~kgst~~  235 (315)
T 3tl2_A          163 FIAQELNLSVKDITGFVLGGHGDDMVPLVRYSYAGGIPLETLI-------PKERLEAIVERTRKGGGEIVGLLGNGSAYY  235 (315)
T ss_dssp             HHHHHHTCCGGGEECCEEBCSGGGCEECGGGCEETTEEGGGTS-------CHHHHHHHHHHHHTHHHHHHHHHSSSCCCH
T ss_pred             HHHHHhCcCHHHceeeEecCCCCcceeecccCeECCEEHHHhC-------CHHHHHHHHHHHHHHHHHHHHhcCCCcchH
Confidence            9999999999999999999999999999999999999998754       456678999999999999999  8899999


Q ss_pred             HHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q 018760          268 AIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQ  347 (350)
Q Consensus       268 ~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~  347 (350)
                      ++|.++++++++|++|++.++|++++++|+||++  ++|||+||++|++||+++.+++|+++|+++|++|++.|++.+++
T Consensus       236 a~a~a~~~~~~ail~~~~~v~~~s~~~~g~yg~~--~~~~s~P~~~g~~Gv~~v~~l~L~~~E~~~l~~s~~~l~~~~~~  313 (315)
T 3tl2_A          236 APAASLVEMTEAILKDQRRVLPAIAYLEGEYGYS--DLYLGVPVILGGNGIEKIIELELLADEKEALDRSVESVRNVMKV  313 (315)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGCE--EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCCcEEEEEEeccCccCCC--ceEEEEEEEEeCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999994  89999999999999999999999999999999999999999886


Q ss_pred             h
Q 018760          348 L  348 (350)
Q Consensus       348 ~  348 (350)
                      |
T Consensus       314 ~  314 (315)
T 3tl2_A          314 L  314 (315)
T ss_dssp             C
T ss_pred             h
Confidence            5

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=100.00  E-value=2e-69  Score=507.76  Aligned_cols=293  Identities=38%  Similarity=0.588  Sum_probs=278.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh-cCCCceEEEcCCccccCCCCEEEEecCCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA-FLPRTKILASVDYAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~-~~~~~~v~~t~~~~al~~aDiVIi~~g~~  116 (350)
                      |||+|||||++|+++++.|+..+++++|+|+|++++++++.++|++|... +....++.+++|+++++|||+||+++|.|
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~~~aDiVViaag~~   80 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA   80 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCCHHHhCCCCEEEECCCCC
Confidence            79999999999999999999999888999999999999999999999875 22356788777889999999999999999


Q ss_pred             cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcC
Q 018760          117 QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLD  196 (350)
Q Consensus       117 ~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~  196 (350)
                      ++||++|.|++.+|++++++++++|.++||++++|++|||+|++|++++|++|+|++||||+||.||++|+++++| ++|
T Consensus        81 ~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPvd~~t~~~~k~~g~p~~rviG~gt~LD~~R~~~~la-~l~  159 (294)
T 1oju_A           81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLY-NAG  159 (294)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHHHHHSCCCTTSEEECSHHHHHHHHHHHHH-HTT
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCHHHEeecccccHHHHHHHHHH-HhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             CCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHHHHH
Q 018760          197 VNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANL  276 (350)
Q Consensus       197 v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~~~i  276 (350)
                      ++|++ +++||||||++++|+||+++++|.|               +++++.+++++++++|++.||+++|++|.+++++
T Consensus       160 v~~~~-~~~V~G~Hg~t~vp~~s~~~v~g~~---------------~~~~~~~~v~~~g~eii~~kG~t~~~~a~a~~~~  223 (294)
T 1oju_A          160 ARNIR-RAWIIGEHGDSMFVAKSLADFDGEV---------------DWEAVENDVRFVAAEVIKRKGATIFGPAVAIYRM  223 (294)
T ss_dssp             CBSCC-CCCEEBCSSTTCEECGGGCCCBSCC---------------CHHHHHHHHHTTHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             CCccC-ceEEEecCCCceeeecccceECCcC---------------hHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence            99999 9999999999999999999999987               1467889999999999999999999999999999


Q ss_pred             HHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHhCC
Q 018760          277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI  350 (350)
Q Consensus       277 i~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~~~  350 (350)
                      +++|++|++.++|++++++|+||++  ++|||+||++|++||+ +.+++|+++|+++|++|++.|++.++++++
T Consensus       224 ~~ail~~~~~v~~~s~~~~g~yg~~--~~~~s~P~~~g~~Gv~-v~~l~L~~~E~~~l~~s~~~l~~~~~~~~~  294 (294)
T 1oju_A          224 VKAVVEDTGEIIPTSMILQGEYGIE--NVAVGVPAKLGKNGAE-VADIKLSDEEIEKLRNSAKILRERLEELGY  294 (294)
T ss_dssp             HHHHHTTCCCEEEEEEEEESGGGCE--EEEEEEEEEEETTEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHcCCCeEEEEEecccccCCCC--ceEEEEEEEEeCCEEE-EecCCCCHHHHHHHHHHHHHHHHHHHhhCC
Confidence            9999999999999999999999996  8999999999999999 999999999999999999999999998764

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=100.00  E-value=4e-69  Score=510.35  Aligned_cols=310  Identities=40%  Similarity=0.637  Sum_probs=293.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCCc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQ  117 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~~  117 (350)
                      |||+|||||++|+++++.|+..++++||+|+|++++++++.++|+.|..++....++.. +++++++|||+||+++|.|+
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~-~~~~a~~~aD~Vii~ag~~~   79 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA-GSYGDLEGARAVVLAAGVAQ   79 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE-CCGGGGTTEEEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE-CCHHHhCCCCEEEECCCCCC
Confidence            69999999999999999999999999999999999999999999999876555667775 46899999999999999999


Q ss_pred             CccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcCC
Q 018760          118 IAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDV  197 (350)
Q Consensus       118 ~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~v  197 (350)
                      +||++|.|++.+|+++++++++.|+++||++|+|++|||+|++|++++|++++|++||||+||+||+.|+++++|+++|+
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~gt~LD~~R~~~~la~~lgv  159 (310)
T 2xxj_A           80 RPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRV  159 (310)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCGGGEEECTTHHHHHHHHHHHHHHHTS
T ss_pred             CCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHHHHHcCCCHHHEEecCcchhHHHHHHHHHHHhCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHHHHHH
Q 018760          198 NAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLA  277 (350)
Q Consensus       198 ~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~~~ii  277 (350)
                      +|++|+++||||||++++|+||+++++|+|+.+++++....++++.++++.++++++++++++.||+++|++|.++++++
T Consensus       160 ~~~~v~~~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~t~~~~a~a~~~~~  239 (310)
T 2xxj_A          160 APQSVHAYVLGEHGDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYYGIGAGLARLV  239 (310)
T ss_dssp             CGGGEEEEEEBCSSTTCEEEEEEEEETTEEHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             CHHHeEEEEecccCCccccchhhccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHhhHHHHhccCCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999998877543323578889999999999999999999999999999999999


Q ss_pred             HHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHhCC
Q 018760          278 RSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI  350 (350)
Q Consensus       278 ~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~~~  350 (350)
                      ++|++|++.+++++++++|+||++  ++|||+||++|++|++++.+++|+++|+++|++|++.|++.++++.+
T Consensus       240 ~ai~~~~~~~~~vs~~~~G~yg~~--~~~~~vP~~ig~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~~~~~~~~  310 (310)
T 2xxj_A          240 RAILTDEKGVYTVSAFTPEVAGVL--EVSLSLPRILGAGGVAGTVYPSLSPEERAALRRSAEILKEAAFALGF  310 (310)
T ss_dssp             HHHHTTCCEEEEEEEEEEEETTEE--EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCCCEEEEEEEEcCccCCc--cEEEEEEEEEeCCeeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999993  89999999999999999999999999999999999999999998753

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=2.7e-69  Score=513.09  Aligned_cols=310  Identities=38%  Similarity=0.686  Sum_probs=283.2

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEec
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTA  113 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~  113 (350)
                      +++++||+|||||++|+++++.|+..++++||+|+|++++++++.++|+.|...+....++.. .++++++|||+||+++
T Consensus         2 ~~~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~-~~~~a~~~aDvVii~a   80 (318)
T 1ez4_A            2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-GEYSDCKDADLVVITA   80 (318)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-CCGGGGTTCSEEEECC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE-CCHHHhCCCCEEEECC
Confidence            345689999999999999999999999999999999999999999999999876555667774 5689999999999999


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHH
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLAD  193 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~  193 (350)
                      |.|++||++|.|++.+|+++++++++.|+++||++|+|++|||+|++|++++|++++|++||||+||.||+.|+++++|+
T Consensus        81 g~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~gt~LD~~R~~~~la~  160 (318)
T 1ez4_A           81 GAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGK  160 (318)
T ss_dssp             CC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHHcCCCHHHEEeccccchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHH
Q 018760          194 HLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSA  273 (350)
Q Consensus       194 ~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~  273 (350)
                      ++|++|++|+++||||||++++|+||+++++|+|+.+++++.  .|+++.++++.++++++++++++.||+++|++|.++
T Consensus       161 ~lgv~~~~v~~~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~--~~~~~~~~~~~~~v~~~g~eii~~kg~t~~~~a~a~  238 (318)
T 1ez4_A          161 QFNVDPRSVDAYIMGEHGDSEFAAYSTATIGTRPVRDVAKEQ--GVSDDDLAKLEDGVRNKAYDIINLKGATFYGIGTAL  238 (318)
T ss_dssp             HHTCCGGGEECCEESSSSSSCEECGGGCEETTEEHHHHHHHT--TCCHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HhCcChhHEEEEEecccCCceEEEehhhcCCCeeHHHHhhcc--CCCHHHHHHHHHHHHHhhhhheeCCCcchHHHHHHH
Confidence            999999999999999999999999999999999998877543  267888899999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018760          274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL  348 (350)
Q Consensus       274 ~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~  348 (350)
                      ++++++|++|++.+++++++++|+||++  ++|||+||++|++|++++.+++|+++|+++|++|++.|++.++++
T Consensus       239 ~~~~~ai~~~~~~~~~vs~~~~G~yg~~--~~~~~vP~~ig~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~~~~~~  311 (318)
T 1ez4_A          239 MRISKAILRDENAVLPVGAYMDGQYGLN--DIYIGTPAIIGGTGLKQIIESPLSADELKKMQDSAATLKKVLNDG  311 (318)
T ss_dssp             HHHHHHHHTTCCEEEEEEEEEESGGGCE--EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcEEEEEEeecCccCCC--ceEEEEEEEEeCCeeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999996  899999999999999999999999999999999999999999865

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=100.00  E-value=2.3e-69  Score=513.56  Aligned_cols=308  Identities=29%  Similarity=0.540  Sum_probs=285.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiVIi~~g  114 (350)
                      +++||+|||||+||+++++.|+..++. +|+|+|++++++++.++|++|...+. ...++..++|+++++|||+||+++|
T Consensus         6 ~~~kI~viGaG~vG~~~a~~l~~~~~~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~~a~~~aDiVIiaag   84 (324)
T 3gvi_A            6 ARNKIALIGSGMIGGTLAHLAGLKELG-DVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDYAAIEGADVVIVTAG   84 (324)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSGGGGTTCSEEEECCS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCC-eEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCHHHHCCCCEEEEccC
Confidence            457999999999999999999999985 99999999999999999999986432 3567887788999999999999999


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHH
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADH  194 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~  194 (350)
                      .|++||++|.|++.+|++++++++++|.++||++++|++|||+|++|++++|++++|++||||++|.||+.|+++++|++
T Consensus        85 ~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPvd~~t~~~~k~sg~p~~rviG~~~~LD~~R~~~~la~~  164 (324)
T 3gvi_A           85 VPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEE  164 (324)
T ss_dssp             CCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCcHHHHHHHHHhcCCCHHHEEeecCccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999997799999999999999


Q ss_pred             cCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHh--cCCcchHHHHH
Q 018760          195 LDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL--KGYTSWAIGYS  272 (350)
Q Consensus       195 l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~--kg~~~~~~a~a  272 (350)
                      +|++|++|+++||||||++++|+||+++|+|+|+.+++..  .|+++++++++.+++++++++|++.  ||+++|++|.+
T Consensus       165 lgv~~~~v~~~v~G~HG~t~~p~~s~~~v~g~p~~~~~~~--~~~~~~~~~~i~~~v~~~g~eIi~~~gkgsa~~~~a~a  242 (324)
T 3gvi_A          165 FNVSVEDVTVFVLGGHGDSMVPLARYSTVAGIPLPDLVKM--GWTSQDKLDKIIQRTRDGGAEIVGLLKTGSAFYAPAAS  242 (324)
T ss_dssp             HTCCGGGEECCEEECSGGGEEECGGGCEETTEEHHHHHHT--TSSCHHHHHHHHHHHHTHHHHHHHHHSSCCCCHHHHHH
T ss_pred             hCcCHHHCeEEEEcCCCCceeeehhhCeECCEEHHHhhhc--cCCCHHHHHHHHHHHHHhHHHHHHhcCCCcHHHHHHHH
Confidence            9999999999999999999999999999999999988743  3788999999999999999999984  67888999999


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018760          273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL  348 (350)
Q Consensus       273 ~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~  348 (350)
                      +++++++|++|++.++||+++++|+||++  ++|||+||++|++|++++.+++|+++|+++|++|++.|++.++++
T Consensus       243 ~~~~~~ail~~~~~v~~~s~~~~g~yg~~--~v~~s~P~~~g~~Gv~~v~~l~L~~~E~~~l~~s~~~l~~~~~~~  316 (324)
T 3gvi_A          243 AIQMAESYLKDKKRVLPVAAQLSGQYGVK--DMYVGVPTVIGANGVERIIEIDLDKDEKAQFDKSVASVAGLCEAC  316 (324)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEEEESGGGCE--EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcEEEEEEEecCccCCC--ceEEEEEEEEeCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999996  899999999999999999999999999999999999999999876

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=8.5e-69  Score=511.07  Aligned_cols=312  Identities=38%  Similarity=0.722  Sum_probs=287.8

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEe
Q 018760           33 PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVT  112 (350)
Q Consensus        33 ~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~  112 (350)
                      ..++++||+|||||++|+++++.|+..++++||+|+|++++++++.++||.|...+....++.. .++++++|||+||++
T Consensus         5 ~~~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~~~~a~~~aDvVii~   83 (326)
T 2zqz_A            5 TDKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS-AEYSDAKDADLVVIT   83 (326)
T ss_dssp             -CCCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-CCGGGGGGCSEEEEC
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE-CCHHHhCCCCEEEEc
Confidence            3556689999999999999999999999989999999999999999999999875555667774 568999999999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHH
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLA  192 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la  192 (350)
                      +|.|++||++|.+++.+|+++++++++.|+++||++|+|++|||+|++|++++|++++|++||||+||.||+.|+++++|
T Consensus        84 ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~gt~LD~~R~~~~la  163 (326)
T 2zqz_A           84 AGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIA  163 (326)
T ss_dssp             CCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHHcCCCHHHEEEccccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHH
Q 018760          193 DHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS  272 (350)
Q Consensus       193 ~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a  272 (350)
                      +++|++|++|+++||||||++++|+||+++++|+|+.++++... .++++.++++.++++++++++++.||+++|++|.+
T Consensus       164 ~~lgv~~~~v~~~v~G~HG~t~~p~~s~~~v~g~~~~e~~~~~~-~~~~~~~~~i~~~v~~~g~eii~~kG~t~~~~a~a  242 (326)
T 2zqz_A          164 EMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHP-EIKEDKLVKMFEDVRDAAYEIIKLKGATFYGIATA  242 (326)
T ss_dssp             HHHTCCGGGEECCEEBSSSTTCEECGGGCEETTEEHHHHHHHCT-TSCHHHHHHHHHHHHTHHHHHHHHHSCCCHHHHHH
T ss_pred             HHhCCChhheEEEEecccCCceEeehhhceECCEEHHHhhcccc-cCCHHHHHHHHHHHHHhHHHHHHcCCCcHHHHHHH
Confidence            99999999999999999999999999999999999988775211 26778889999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018760          273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL  348 (350)
Q Consensus       273 ~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~  348 (350)
                      +++++++|++|++.+++++++++|+||++  ++|||+||++|++|++++.+++|+++|+++|++|++.|++.++++
T Consensus       243 a~~~~~ai~~~~~~~~~vsv~~~G~yg~~--~~~~svP~~ig~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~~~~~~  316 (326)
T 2zqz_A          243 LARISKAILNDENAVLPLSVYMDGQYGLN--DIYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLKKVLTDA  316 (326)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEEEESGGGCE--EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcEEEEEEeccCccCCC--ceEEEEEEEEcCCeeEEEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999996  899999999999999999999999999999999999999999875

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=4.3e-68  Score=505.10  Aligned_cols=313  Identities=36%  Similarity=0.635  Sum_probs=274.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEec
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTA  113 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~  113 (350)
                      .++++||+|||||++|+++++.|+..++++||+|+|++++++++.++|++|...+....++.. +++++++|||+||+++
T Consensus         4 ~~~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~~~~a~~~aDvVii~~   82 (318)
T 1y6j_A            4 VKSRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA-GDYSDVKDCDVIVVTA   82 (318)
T ss_dssp             ---CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC---CGGGGTTCSEEEECC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE-CCHHHhCCCCEEEEcC
Confidence            445789999999999999999999999889999999999999999999998765444556664 4688999999999999


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHH
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLAD  193 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~  193 (350)
                      |.|++||++|.|++.+|+++++++++.|.++||++|+|++|||++++|++++|++++|++||||+||.+|+.|+++++|+
T Consensus        83 g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~~~~~~k~s~~p~~rviG~gt~Ld~~r~~~~la~  162 (318)
T 1y6j_A           83 GANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSE  162 (318)
T ss_dssp             CC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHHHHHHTCCTTTEEECTTHHHHHHHHHHHHT
T ss_pred             CCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHHHHcCCCHHHEeccCCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHH
Q 018760          194 HLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSA  273 (350)
Q Consensus       194 ~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~  273 (350)
                      ++|++|++|+++||||||++++|+||+++++|+|+.+++++....++++.++++.++++++++++++.||+++|++|.++
T Consensus       163 ~lgv~~~~v~~~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~kg~t~~~~a~a~  242 (318)
T 1y6j_A          163 KLGVDVKNVHGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSI  242 (318)
T ss_dssp             TTTCCTTTEECCEEBCSSSSCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHHHHHTSCCCHHHHHHH
T ss_pred             HhCCCHHHeEEEEecccCCcEeeeehhceECCEEHHHHhhhhcccCCHHHHHHHHHHHHHhhHhHhhCCCccHHHHHHHH
Confidence            99999999999999999999999999999999999887753200245666789999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHhC
Q 018760          274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLG  349 (350)
Q Consensus       274 ~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~~  349 (350)
                      ++++++|++|++.+++++++++|+||++  ++|||+||++|++|++++.+++|+++|+++|++|++.|++.++++.
T Consensus       243 ~~~~~ai~~~~~~~~~~~~~~~G~yg~~--~~~~~vP~~ig~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~~~~~~~  316 (318)
T 1y6j_A          243 NTIVETLLKNQNTIRTVGTVINGMYGIE--DVAISLPSIVNSEGVQEVLQFNLTPEEEEALRFSAEQVKKVLNEVK  316 (318)
T ss_dssp             HHHHHHHHHTCCCEECCEEEECSBTTBC--SEEEECCEEEETTEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCCCcEEEEEEeecCccCCc--ceEEEEEEEEcCCeeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999993  8999999999999999999999999999999999999999998763

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=100.00  E-value=1.8e-67  Score=500.73  Aligned_cols=308  Identities=38%  Similarity=0.712  Sum_probs=289.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiVIi~~g  114 (350)
                      +++||+|||||++|+++++.|+..+++++|+|+|++++++++.++|++|...+. ...++.. +++++++|||+||+++|
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~~~~a~~~aDvVvi~ag   83 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-GEYSDCHDADLVVICAG   83 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-CCGGGGTTCSEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-CCHHHhCCCCEEEECCC
Confidence            457999999999999999999999988999999999999999999999986544 3556775 56789999999999999


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHH
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADH  194 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~  194 (350)
                      .|+++|++|.+++.+|+++++++++.|.++||++|+|++|||+|++|++++|++++|++||||+||.+|+.|+++++|++
T Consensus        84 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~k~~~~p~~rviG~gt~lD~~r~~~~la~~  163 (317)
T 3d0o_A           84 AAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEA  163 (317)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHHHHhCCCHHHEEecCccccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHHH
Q 018760          195 LDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAA  274 (350)
Q Consensus       195 l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~~  274 (350)
                      +|++|++|+++||||||++++|+||+++++|+|+.+++++.  .++++.++++.++++++++++++.||+++|++|.+++
T Consensus       164 l~v~~~~v~~~v~G~HG~t~~p~~s~~~v~g~~~~~~~~~~--~~~~~~~~~~~~~v~~~g~eii~~kg~~~~~~a~a~~  241 (317)
T 3d0o_A          164 FDVAPRSVDAQIIGEHGDTELPVWSHANIAGQPLKTLLEQR--PEGKAQIEQIFVQTRDAAYDIIQAKGATYYGVAMGLA  241 (317)
T ss_dssp             HTSCGGGCBCCEEBCSSTTCEECTTTCEETTEEHHHHHHTS--TTHHHHHHHHHHHHHTHHHHHHHHHSCCCHHHHHHHH
T ss_pred             hCcChhhEEEEEEecCCCCeeEeeeccccCCEEHHHHhhcc--CCCHHHHHHHHHHHHhhhhEEEeCCCCchHhHHHHHH
Confidence            99999999999999999999999999999999998877543  2567788999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018760          275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL  348 (350)
Q Consensus       275 ~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~  348 (350)
                      +++++|++|++.+++++++++|+||++  ++|||+||++|++|++++.+++|+++|+++|++|++.|++.++++
T Consensus       242 ~~~~ai~~~~~~~~~~~~~~~g~~g~~--~~~~~vP~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~  313 (317)
T 3d0o_A          242 RITEAIFRNEDAVLTVSALLEGEYEEE--DVYIGVPAVINRNGIRNVVEIPLNDEEQSKFAHSAKTLKDIMAEA  313 (317)
T ss_dssp             HHHHHHHTTCCEEEEEEEEEESGGGCE--EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHcCCCcEEEEEEeecCccCCC--ceEEEEEEEEeCCeeEEEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999996  899999999999999999999999999999999999999999865

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=100.00  E-value=3.2e-67  Score=496.91  Aligned_cols=300  Identities=31%  Similarity=0.557  Sum_probs=284.4

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhc-CCCceEEEcCCccccCCCCEEEEecCCCc
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILASVDYAVTAGSDLCIVTAGARQ  117 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~-~~~~~v~~t~~~~al~~aDiVIi~~g~~~  117 (350)
                      ||+|||||+||+++++.++..++ +||+|+|++++++++.++|+.|...+ ....++..|+|+++++|||+||+++|.|+
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l-~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~~~aD~Vi~~ag~~~   79 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSYEDMRGSDIVLVTAGIGR   79 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTC-SCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECCSCCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCC-CEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCHHHhCCCCEEEEeCCCCC
Confidence            79999999999999999999998 89999999999999999999997643 23567887788999999999999999999


Q ss_pred             CccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcCC
Q 018760          118 IAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDV  197 (350)
Q Consensus       118 ~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~v  197 (350)
                      +||++|.|++.+|++++++++++|+++||++|+|++|||+|++|++++|++++|++||||+||+||+.|+++++|+++|+
T Consensus        80 k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~~~~p~~rviG~gt~LD~~R~~~~la~~lgv  159 (308)
T 2d4a_B           80 KPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVDAMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGV  159 (308)
T ss_dssp             CSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECCHHHHHHHHHHHHHHHHTS
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHhcCCChhhEEEecccchHHHHHHHHHHHhCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcC-CcchHHHHHHHHH
Q 018760          198 NAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKG-YTSWAIGYSAANL  276 (350)
Q Consensus       198 ~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg-~~~~~~a~a~~~i  276 (350)
                      +|++|+++||||||++++|+||+++++|+|+.+++       +++.++++.++++++++++++.|| +++|++|.+++++
T Consensus       160 ~~~~v~~~v~G~Hg~t~~p~~s~~~v~g~~~~~~~-------~~~~~~~~~~~v~~~g~eii~~kg~s~~~~~a~a~~~~  232 (308)
T 2d4a_B          160 SFKSVNAIVLGMHGQKMFPVPRLSSVGGVPLEHLM-------SKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLVLT  232 (308)
T ss_dssp             CGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHS-------CHHHHHHHHHHHHTHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred             ChhHeEEEEEeccCCceeeeehhccCCCEEHHHHc-------CHHHHHHHHHHHHHhhHhhhhCCCCccHHHHHHHHHHH
Confidence            99999999999999999999999999999987654       456678999999999999999999 9999999999999


Q ss_pred             HHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018760          277 ARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL  348 (350)
Q Consensus       277 i~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~  348 (350)
                      +++|++|++.+++++++++|+||++  ++|||+||++|++|++++.+++|+++|+++|++|++.|++.++++
T Consensus       233 ~~ai~~~~~~v~~vs~~~~G~yg~~--~~~~~vP~~ig~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~~~~~~  302 (308)
T 2d4a_B          233 VEAIKRDSKRIYPYSLYLQGEYGYN--DIVAEVPAVIGKSGIERIIELPLTEDEKRKFDEAVQAVKKLVETL  302 (308)
T ss_dssp             HHHHHTTCCEEEEEEEEEESGGGCE--EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHhCCCcEEEEEEEEcCccCCC--ceEEEEEEEEcCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999994  899999999999999999999999999999999999999999865

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=100.00  E-value=3.5e-66  Score=491.81  Aligned_cols=310  Identities=38%  Similarity=0.689  Sum_probs=290.4

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiVIi~~  113 (350)
                      ++++||+|||||.||+++++.|+..++.++|+|+|++++++++.++|+.|...+. ...++. +++++++++||+||+++
T Consensus         4 ~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~-~~~~~al~~aDvViia~   82 (316)
T 1ldn_A            4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW-HGDYDDCRDADLVVICA   82 (316)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEE-ECCGGGTTTCSEEEECC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEE-cCcHHHhCCCCEEEEcC
Confidence            3467999999999999999999999988899999999999998899999976433 255666 35678999999999999


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHH
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLAD  193 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~  193 (350)
                      +.++++|++|.+++.+|+++++++++.++++||++|++++|||+|++|++++|++++|++||||+||.+|+.|+++++|+
T Consensus        83 ~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tNPv~~~~~~~~~~s~~p~~rviG~gt~lD~~r~~~~la~  162 (316)
T 1ldn_A           83 GANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGE  162 (316)
T ss_dssp             SCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHHHHHTCCGGGEEECTTHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHHHhCCCHHHEEecccchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHH
Q 018760          194 HLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSA  273 (350)
Q Consensus       194 ~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~  273 (350)
                      ++|++|++|+++||||||++++|+||+++++|+|+.+++++.. +|+++.++++.++++++++++++.||+++|++|.++
T Consensus       163 ~l~v~~~~v~~~v~G~HG~~~~p~~s~~~v~g~~~~~~~~~~~-~~~~~~~~~~~~~v~~~g~eii~~kg~~~~~~a~a~  241 (316)
T 1ldn_A          163 YFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKG-EEAQKDLERIFVNVRDAAYQIIEKKGATYYGIAMGL  241 (316)
T ss_dssp             HHTSCGGGEEEEEEBCSSTTCEEEEEEEEETTEESTTTSGGGT-TTHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HhCCCHHHeEEEEecccCCceeeeehhccCCCEEHHHHhhccc-cCCHHHHHHHHHHHHHhHHHHHhccCCcHHHHHHHH
Confidence            9999999999999999999999999999999999998876543 467778899999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018760          274 ANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL  348 (350)
Q Consensus       274 ~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~  348 (350)
                      ++++++|++|++.+++++++++|+||++  ++|||+||++|++|++++.+++|+++|+++|++|++.|++.++++
T Consensus       242 ~~~~~ai~~~~~~~~~~~~~~~g~yg~~--~~~~~vP~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~  314 (316)
T 1ldn_A          242 ARVTRAILHNENAILTVSAYLDGLYGER--DVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLARA  314 (316)
T ss_dssp             HHHHHHHHTTCCEEEEEEEEEESTTSCE--EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCCCcEEEEEEEecCccCCc--ceEEEEEEEEeCCeeEEEccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999993  899999999999999999999999999999999999999999876

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=100.00  E-value=1.7e-65  Score=485.69  Aligned_cols=302  Identities=32%  Similarity=0.552  Sum_probs=276.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhc-CCCceEEEcCCccccCCCCEEEEecCCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILASVDYAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~-~~~~~v~~t~~~~al~~aDiVIi~~g~~  116 (350)
                      +||+|||||+||+++++.|+..+++ +|+|+|++++++++.++|+.+.... ....++..++|++++++||+||+++|.|
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~~~aD~Vi~a~g~p   81 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELG-DIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGAP   81 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCS-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCC-eEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCHHHHCCCCEEEEcCCCC
Confidence            6999999999999999999999975 4999999999999989999986532 2356788778899999999999999999


Q ss_pred             cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcC
Q 018760          117 QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLD  196 (350)
Q Consensus       117 ~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~  196 (350)
                      ++||++|.|++.+|+++++++++.|+++||++|++++|||++++|+++++++++|++||||+||+||+.|+++++|+++|
T Consensus        82 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNPv~~~t~~~~~~~~~~~~rviG~gt~LD~~r~~~~la~~lg  161 (309)
T 1ur5_A           82 RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAG  161 (309)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECCHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCchHHHHHHHHHHcCCCHHHEEECCcchHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHH--hcCCcchHHHHHHH
Q 018760          197 VNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVIS--LKGYTSWAIGYSAA  274 (350)
Q Consensus       197 v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~--~kg~~~~~~a~a~~  274 (350)
                      ++|++|+++||||||++++|+||+++++|+|+.+++       +++.++++.++++++++++++  .||+++|++|.+++
T Consensus       162 v~~~~v~~~v~G~Hg~t~~p~~s~~~v~g~~~~~~~-------~~~~~~~~~~~v~~~g~eii~~~~kgs~~~~~a~a~~  234 (309)
T 1ur5_A          162 VSVEDVQAMLMGGHGDEMVPLPRFSCISGIPVSEFI-------APDRLAQIVERTRKGGGEIVNLLKTGSAYYAPAAATA  234 (309)
T ss_dssp             CCGGGEEECCEECSGGGEECCGGGEEETTEEGGGTS-------CHHHHHHHHHHHHTHHHHHHHHHSSCCCCHHHHHHHH
T ss_pred             CChhheeEEEecCcCCceeeeeecceeCCEeHHHHc-------CHhHHHHHHHHHHhhhHHhhhhccCCCcHHHHHHHHH
Confidence            999999999999999999999999999999997654       466688999999999999999  79999999999999


Q ss_pred             HHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHhC
Q 018760          275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLG  349 (350)
Q Consensus       275 ~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~~  349 (350)
                      +++++|++|++.+++++++++|+||++  ++|||+||++|++|++++.+++|+++|+++|++|++.|++.++++.
T Consensus       235 ~~~~ai~~~~~~~~~~~~~~~g~~g~~--~~~~~vP~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~~  307 (309)
T 1ur5_A          235 QMVEAVLKDKKRVMPVAAYLTGQYGLN--DIYFGVPVILGAGGVEKILELPLNEEEMALLNASAKAVRATLDTLK  307 (309)
T ss_dssp             HHHHHHHTTCCEEEEEEEEEESGGGCE--EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCcEEEEEEEecCccCCc--ceEEEEEEEEeCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999993  8999999999999999999999999999999999999999998763

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=100.00  E-value=3.1e-67  Score=497.95  Aligned_cols=294  Identities=49%  Similarity=0.833  Sum_probs=276.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEec
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTA  113 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~  113 (350)
                      .++.+||+|||||.||+++++.|+..+++++|+|+|++++++++.++||+|...+....++..++|+++++|||+||+++
T Consensus        18 ~~~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~~~daDiVIita   97 (330)
T 3ldh_A           18 PRSYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSVSAGSKLVVITA   97 (330)
T ss_dssp             CCCCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCSCSSCSEEEECC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHHhCCCCEEEEeC
Confidence            33568999999999999999999999998999999999999999999999987665566788888998899999999999


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHH
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLAD  193 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~  193 (350)
                      |.|++||++|+|++.+|++++++++++|.++||++|++++|||+|++|++++|++|+|++||||+||.||+.|+++++|+
T Consensus        98 G~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNPvdi~t~~~~k~sg~p~~rViG~gt~LDs~R~~~~lA~  177 (330)
T 3ldh_A           98 GARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGTDKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGE  177 (330)
T ss_dssp             SCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHCCCGGGEECCTTHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCccHHHHHHHHHHhCCCHHHeecccCchhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHH--
Q 018760          194 HLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGY--  271 (350)
Q Consensus       194 ~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~--  271 (350)
                      ++|++|++|+++||||||++++|+||+         +       |.     +++.+++++++++|++.||+++|++|.  
T Consensus       178 ~lgv~~~~V~~~V~G~Hg~t~vp~~S~---------~-------~~-----~~~~~~v~~~g~eii~~kg~t~~a~a~~~  236 (330)
T 3ldh_A          178 RLGVHSCLVIGWVIGQHGDSVPSVWSG---------M-------WD-----AKLHKDVVDSAYEVIKLKGYTSWAIGLVV  236 (330)
T ss_dssp             HHTSCTTTCCEEECSSSSTTCCEEEEE---------E-------EE-----TTEEHHHHHCCCTTSTTCHHHHHHHHHTT
T ss_pred             HhCCCHHHeEEEEEcCCCCceeeechh---------h-------HH-----HHHHHHHHHHHHHHHHccCCcceeeeeec
Confidence            999999999999999999999999998         1       10     245567889999999999999999999  


Q ss_pred             ---------------HHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEE--eecCCCCHHHHHHH
Q 018760          272 ---------------SAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLG--VTNIHLNQEESHRL  334 (350)
Q Consensus       272 ---------------a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~--v~~~~L~~~E~~~l  334 (350)
                                     ++++++++|++|++.++|++++.+|+||++ +++|||+||++| +|+++  +.+++|+++|+++|
T Consensus       237 ~~~~~~~~~~~~~~~a~~~~~~ail~~~~~v~~~s~~~~g~yg~~-~~v~~s~P~~lg-~Gv~~~~iv~~~L~~~E~~~l  314 (330)
T 3ldh_A          237 SNPVDVLTYVAWKGCSVADLAQTIMKDLCRVHPVSTMVKDFYGIK-DNVFLSLPCVLN-NGISHCNIVKMKLKPDEEQQL  314 (330)
T ss_dssp             HHHHTTSSSCSCTHHHHHHHHHHHHHTCCEEECCBCCCSSSSSCC-SCCCCBCCEEEB-TTBCTTCCCCCCCCHHHHHHH
T ss_pred             cCccchhhhhhhHHHHHHHHHHHHHcCCCceEEEEeecCCccCCC-CceEEEEEEEEC-CcEEEcceecCCCCHHHHHHH
Confidence                           999999999999999999999999999997 589999999999 99999  99999999999999


Q ss_pred             HHHHHHHHHHHHHhCC
Q 018760          335 RNSAKTILEVQSQLGI  350 (350)
Q Consensus       335 ~~sa~~i~~~~~~~~~  350 (350)
                      ++|++.|++.++++.+
T Consensus       315 ~~s~~~l~~~~~~~~~  330 (330)
T 3ldh_A          315 QKSATTLWDIQKDLKF  330 (330)
T ss_dssp             HHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            9999999999998753

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=100.00  E-value=1.2e-65  Score=490.90  Aligned_cols=303  Identities=23%  Similarity=0.390  Sum_probs=272.1

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ++||+|||| |.||+++++.++..++.+||+|+|++++++++.++||+|.. + +..++..++++ ++++|||+||+++|
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~-~-~~~~i~~t~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCG-F-EGLNLTFTSDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHC-C-TTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCc-C-CCCceEEcCCHHHHhCCCCEEEEccC
Confidence            479999998 99999999999999988899999999999999999999985 3 33456666776 68999999999999


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeE-EEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHH
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCI-LLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLAD  193 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~-viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~  193 (350)
                      .|++||++|.|++.+|+++++++++.|.++||+++ ++++|||+|++|++++|++|+|++||+|+ |.||++|+++++|+
T Consensus        86 ~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPvd~~t~i~~k~sg~p~~rv~g~-t~LDs~R~~~~la~  164 (343)
T 3fi9_A           86 APRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADITGLVTLIYSGLKPSQVTTL-AGLDSTRLQSELAK  164 (343)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSHHHHHHHHHHHHTCCGGGEEEE-CCHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCchHHHHHHHHHHcCCCcceEEEe-cCcHHHHHHHHHHH
Confidence            99999999999999999999999999999999996 89999999999999999999999999986 99999999999999


Q ss_pred             HcCCCCcceE-EEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcc-hHHHH
Q 018760          194 HLDVNAQDVQ-AYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTS-WAIGY  271 (350)
Q Consensus       194 ~l~v~p~~v~-~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~-~~~a~  271 (350)
                      ++|++|++|+ ++||||||++++|+||+++|+|+|+.+++...  .+++++++++.+++++++++|++.||+++ |++|.
T Consensus       165 ~l~v~~~~v~~~~ViGeHgds~vp~~S~a~v~G~pl~~~~~~~--~~~~~~~~~i~~~v~~~g~eIi~~kg~ss~~s~A~  242 (343)
T 3fi9_A          165 HFGIKQSLVTNTRTYGGHGEQMAVFASTAKVNGTPLTDLIGTD--KLTNEQWAELKQRVVKGGANIIKLRGRSSFQSPSY  242 (343)
T ss_dssp             HHTSCGGGEECCCEEESSGGGEEECGGGCEETTEEGGGTTTBT--TBCHHHHHHHHHHHHTHHHHHHHHHSSCCCHHHHH
T ss_pred             HhCcCHHHcccceEEEcCCCceeeeeecceECCEEhhHhcccc--CCCHHHHHHHHHHHHhhhHHHHHccCCCcHHhHHH
Confidence            9999999997 89999999999999999999999999887543  36788899999999999999999999875 58999


Q ss_pred             HHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCC--CCHHHHHHHHHHHHHHHHHHHHh
Q 018760          272 SAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIH--LNQEESHRLRNSAKTILEVQSQL  348 (350)
Q Consensus       272 a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~--L~~~E~~~l~~sa~~i~~~~~~~  348 (350)
                      ++++++++|++|++.++|++++.+|+| .  +++|||+||++|++|++.+ .++  |+++|+++|++|++.|++.++++
T Consensus       243 a~~~~~~ail~d~~~v~~~s~~~~g~~-~--~~v~~s~P~~lg~~Gv~~~-~~~~ll~~~E~~~l~~Sa~~l~~~~~~~  317 (343)
T 3fi9_A          243 VSIEMIRAAMGGEAFRWPAGCYVNVPG-F--EHIMMAMETTITKDGVKHS-DINQLGNEAERAALKESYSHLAKLRDEV  317 (343)
T ss_dssp             HHHHHHHHHTTSSCCCSCEEEEEEETT-E--EEEEEEESEEEETTEEEEC-CGGGSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCceEEEEEEEeCCC-c--CceEEEeEEEEeCCceEEE-ecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998864 4  4899999999999999976 555  89999999999999999998764

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=100.00  E-value=7.3e-65  Score=488.03  Aligned_cols=311  Identities=20%  Similarity=0.246  Sum_probs=270.8

Q ss_pred             CCCCCCCCCCCCeEEEEc-CChhHHHHHHHHHhcCCCCe---EEEEeCCc----cchHHHHHHHHHHhh-cCCCceEEEc
Q 018760           27 HAAPPSPTKRHTKISVIG-TGNVGMAIAQTILTQDFVEE---LALVDAKA----DKLRGEMLDLQHAAA-FLPRTKILAS   97 (350)
Q Consensus        27 ~~~~~~~~~~~~KI~IIG-AG~vG~~~a~~l~~~~~~~e---v~L~D~~~----~~l~~~~~dl~~~~~-~~~~~~v~~t   97 (350)
                      ...+...+++++||+||| +|.||+++++.|+.++++++   |+|+|++.    +++++.++||+|+.. +.  ..+..+
T Consensus        22 ~e~~~~~~~~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~--~~v~i~   99 (375)
T 7mdh_A           22 AEDKTKSWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLL--REVSIG   99 (375)
T ss_dssp             -------CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTE--EEEEEE
T ss_pred             hhhhHhhCCCCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhc--CCcEEe
Confidence            444556777889999999 59999999999999999877   88877644    458999999999873 32  233333


Q ss_pred             -CCccccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHHHHHHHHhCCCCCcE
Q 018760           98 -VDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILTYVAWKLSGLPSNRV  175 (350)
Q Consensus        98 -~~~~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~~~~~~~sg~~~~rv  175 (350)
                       .++++++|||+||+++|.|++||++|+|++..|++|++++++.|.++ +|++++|++|||+|++|++++|+++.+|+|+
T Consensus       100 ~~~y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~ia~k~sg~~~~rv  179 (375)
T 7mdh_A          100 IDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKN  179 (375)
T ss_dssp             SCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGG
T ss_pred             cCCHHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHcCCCCccE
Confidence             45799999999999999999999999999999999999999999998 8999999999999999999999988777899


Q ss_pred             eeecCCccHHHHHHHHHHHcCCCCcceEE-EEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhh
Q 018760          176 IGSGTNLDSSRFRFLLADHLDVNAQDVQA-YIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDS  254 (350)
Q Consensus       176 iG~g~~ld~~r~~~~la~~l~v~p~~v~~-~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~  254 (350)
                      ||.||.||++|++++||+++|++|++|+. +||||||++++|+||+++|+|+|+.+++.+.. |    ..+++.++++++
T Consensus       180 ig~gT~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeHgdt~vp~~S~a~V~G~pl~~~~~~~~-~----~~~~i~~~v~~~  254 (375)
T 7mdh_A          180 FHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTK-W----LEEEFTITVQKR  254 (375)
T ss_dssp             EEECCHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTCCCHH-H----HHHHHHHHHHTH
T ss_pred             EEeeehHHHHHHHHHHHHHhCcChhhcccceEEecCCCceeeeeecccCCCEEhhHhccchh-h----HHHHHHHHHHHH
Confidence            99999999999999999999999999996 89999999999999999999999998775321 2    246788999999


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHH-----hcCCCeEEEEEEecc-ccCCCCCCeEEEEeEEEcCCceEEeec-CCCC
Q 018760          255 AYEVISLKGYTSWAIGYSAANLARSII-----RDQRKIHPVSVLAKG-FYGIDGGDVFLSLPAQLGRGGVLGVTN-IHLN  327 (350)
Q Consensus       255 ~~~v~~~kg~~~~~~a~a~~~ii~ai~-----~~~~~v~~v~v~~~g-~~gi~~~~~~~s~Pv~ig~~Gv~~v~~-~~L~  327 (350)
                      +++|++.||.++|  |.++++++++|+     +|++.++|||++++| +||++ +++|||+||++|++|++++.+ ++|+
T Consensus       255 g~eII~~kG~ts~--a~aa~~i~~~i~~~l~g~d~~~v~~vs~~~~G~~YGi~-~dv~~s~P~vlg~~Gv~~iv~~l~L~  331 (375)
T 7mdh_A          255 GGALIQKWGRSSA--ASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIA-EDIVFSMPCRSKGDGDYELATDVSND  331 (375)
T ss_dssp             HHHHHHHTSSCCH--HHHHHHHHHHHHHHHSCCCTTCCEEEEEECTTCSSCCC-SSSEEEEEEECCSSSCCEECCCCCCC
T ss_pred             HHHHHHhcCCCch--HHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCccCCCC-CceEEEEEEEEcCCeeEEecCCCCCC
Confidence            9999999999987  466666666665     478999999999999 69997 599999999999999999885 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 018760          328 QEESHRLRNSAKTILEVQSQ  347 (350)
Q Consensus       328 ~~E~~~l~~sa~~i~~~~~~  347 (350)
                      ++|+++|++|+++|+++++.
T Consensus       332 ~~E~~~l~~Sa~~L~~e~~~  351 (375)
T 7mdh_A          332 DFLWERIKKSEAELLAEKKC  351 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999864

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=100.00  E-value=2e-64  Score=480.52  Aligned_cols=307  Identities=31%  Similarity=0.526  Sum_probs=288.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhc-CCCceEEEcCCccccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILASVDYAVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~-~~~~~v~~t~~~~al~~aDiVIi~~g  114 (350)
                      +++||+|||||+||++++..|+..+++ +|+|+|++++++++..+++++.... ....++..++|++++++||+||+++|
T Consensus         3 ~~~kI~VIGaG~vG~~ia~~la~~g~~-~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~~al~~aD~Vi~a~g   81 (322)
T 1t2d_A            3 PKAKIVLVGSGMIGGVMATLIVQKNLG-DVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAG   81 (322)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCHHHhCCCCEEEEeCC
Confidence            457999999999999999999999986 4999999999999999999886432 23567887788999999999999999


Q ss_pred             CCcCcccc-----HHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHH
Q 018760          115 ARQIAGES-----RLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRF  189 (350)
Q Consensus       115 ~~~~~g~~-----r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~  189 (350)
                      .|+++|++     |.|++.+|++++++++++|.++||++|+|++|||++++|+++++.+|+||+||||+||.||++|+++
T Consensus        82 ~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP~~~~t~~~~~~~g~~~~rviG~gt~ld~~R~~~  161 (322)
T 1t2d_A           82 FTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLKY  161 (322)
T ss_dssp             CSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHHHHHHCCCGGGEEECCHHHHHHHHHH
T ss_pred             CCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHHHHHhcCCChHHEEeccCcccHHHHHH
Confidence            99999999     9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHH
Q 018760          190 LLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAI  269 (350)
Q Consensus       190 ~la~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~  269 (350)
                      ++|+++|++|++|+++||||||++++|.||+++++|+|+.+++++.  ||+++.++++.++++++++++++.||+++|++
T Consensus       162 ~la~~lgv~~~~v~~~v~G~HG~~~~p~~s~~~v~g~~~~~~~~~~--~~~~~~~~~~~~~v~~~g~eii~~kgs~~~~~  239 (322)
T 1t2d_A          162 YISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNK--LISDAELEAIFDRTVNTALEIVNLHASPYVAP  239 (322)
T ss_dssp             HHHHHHTSCGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHTT--SSCHHHHHHHHHHHHTHHHHHHHHTSSCCHHH
T ss_pred             HHHHHhCCCHHHeEEEEEcCCCCcEEeeHHHceECcEeHHHhcccc--CCCHHHHHHHHHHHHHHHHHHHhccCchHHHH
Confidence            9999999999999999999999999999999999999998887654  67888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q 018760          270 GYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQ  347 (350)
Q Consensus       270 a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~  347 (350)
                      |.++++++++|++|++.+++++++++|+||++  ++|||+||++|++|++++.+++|+++|+++|++|++.|++.++.
T Consensus       240 a~a~~~~~~ai~~~~~~v~~~s~~~~g~~g~~--~~~~~vP~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~L~~~~~~  315 (322)
T 1t2d_A          240 AAAIIEMAESYLKDLKKVLICSTLLEGQYGHS--DIFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIAETKRMKAL  315 (322)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEEEEESGGGCE--EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEEEecCccCCC--ceEEEEEEEEeCCeeEEeCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999984  89999999999999999999999999999999999999998864

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=100.00  E-value=9e-64  Score=472.59  Aligned_cols=300  Identities=32%  Similarity=0.543  Sum_probs=281.9

Q ss_pred             CeEEEEc-CChhHHHHHHHHHhcCCCCeEEEEeC--CccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecC
Q 018760           38 TKISVIG-TGNVGMAIAQTILTQDFVEELALVDA--KADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAG  114 (350)
Q Consensus        38 ~KI~IIG-AG~vG~~~a~~l~~~~~~~ev~L~D~--~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g  114 (350)
                      |||+|+| +|++|++++..|+..++..|++|+|+  +++++++.++|+.|...+....++.. +++++++|||+||++++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~~~~a~~~aDvVi~~ag   79 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-GGYEDTAGSDVVVITAG   79 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-CCGGGGTTCSEEEECCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-CCHHHhCCCCEEEEcCC
Confidence            6999999 69999999999999888889999999  98888888999999865334567775 46889999999999999


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHH
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADH  194 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~  194 (350)
                      .++++|++|.+++.+|+++++++++.+++++|++|++++|||+|++|++++|++++|++||||+||+||+.|+++++|++
T Consensus        80 ~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~~~~~~~p~~rviG~gt~Ld~~r~~~~la~~  159 (303)
T 1o6z_A           80 IPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEE  159 (303)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHHHHHHSSSCGGGEEECCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHcCCCHHHeeecccchhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHHH
Q 018760          195 LDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAA  274 (350)
Q Consensus       195 l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~~  274 (350)
                      +|++|++|+++||||||++++|+||+++++|.|  +++       +++.++++.++++++++++++.||+++|++|.+++
T Consensus       160 l~v~~~~v~~~v~G~HG~~~~p~~s~~~v~g~p--~~~-------~~~~~~~~~~~v~~~g~eii~~kg~~~~~~a~a~~  230 (303)
T 1o6z_A          160 FDAPVQNVEGTILGEHGDAQVPVFSKVSVDGTD--PEF-------SGDEKEQLLGDLQESAMDVIERKGATEWGPARGVA  230 (303)
T ss_dssp             HTCCGGGEECCEEECSSTTEEECGGGCEETTBC--CCC-------CHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred             hCcCHHHeEEEEEeCCCCccccCCcccccCCcC--ccC-------CHHHHHHHHHHHHHHhHHHHhcCCChHHHHHHHHH
Confidence            999999999999999999999999999999998  543       45667899999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHhC
Q 018760          275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLG  349 (350)
Q Consensus       275 ~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~~  349 (350)
                      +++++|++|++.+++++++++|+||++  ++|||+||++|++|++++.+++|+++|+++|++|++.|++.++++.
T Consensus       231 ~~~~ai~~~~~~~~~~~~~~~g~~g~~--~~~~~~P~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~~  303 (303)
T 1o6z_A          231 HMVEAILHDTGEVLPASVKLEGEFGHE--DTAFGVPVSLGSNGVEEIVEWDLDDYEQDLMADAAEKLSDQYDKIS  303 (303)
T ss_dssp             HHHHHHHTTCCCEEEEEEEEESGGGCE--EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhCCCCEEEEEEecCCccCCc--ceEEEEEEEEeCCeeEEecCCCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999993  8999999999999999999999999999999999999999998863

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=100.00  E-value=5.7e-64  Score=479.24  Aligned_cols=313  Identities=32%  Similarity=0.560  Sum_probs=291.4

Q ss_pred             CCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCcc-ccCCCCE
Q 018760           31 PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYA-VTAGSDL  108 (350)
Q Consensus        31 ~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~-al~~aDi  108 (350)
                      +.|..++|||+|||||++|++++..|+..+++ +|+|+|++++++++.+.++.+...+. ...++..|+|++ ++++||+
T Consensus         3 ~~~~~~~~kI~VIGaG~vG~~lA~~la~~g~~-~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDi   81 (331)
T 1pzg_A            3 PALVQRRKKVAMIGSGMIGGTMGYLCALRELA-DVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADC   81 (331)
T ss_dssp             CCCCSCCCEEEEECCSHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSE
T ss_pred             cCcCCCCCEEEEECCCHHHHHHHHHHHhCCCC-eEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCE
Confidence            44566678999999999999999999999875 59999999999998888888875432 345788888985 8999999


Q ss_pred             EEEecCCCcCccc-----cHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCcc
Q 018760          109 CIVTAGARQIAGE-----SRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLD  183 (350)
Q Consensus       109 VIi~~g~~~~~g~-----~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld  183 (350)
                      ||+++|.|+++|+     +|.+++.+|++++++++++|.++||++|+|++|||++++|+++++.+++||+||||+||.||
T Consensus        82 Vi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~~~t~~~~~~~~~~~~rviG~gt~LD  161 (331)
T 1pzg_A           82 VIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVMCEASGVPTNMICGMACMLD  161 (331)
T ss_dssp             EEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECCHHHH
T ss_pred             EEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchHHHHHHHHHhcCCChhcEEeccchHH
Confidence            9999999999999     99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHH--h
Q 018760          184 SSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVIS--L  261 (350)
Q Consensus       184 ~~r~~~~la~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~--~  261 (350)
                      +.|+++++|+++|++|++|+++|||+||++++|+||+++++|+|+.+++.+.  |++++.++++.++++++++++++  .
T Consensus       162 ~~R~~~~la~~lgv~~~~v~~~v~G~Hg~~~~p~~s~~~v~G~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~eii~~~~  239 (331)
T 1pzg_A          162 SGRFRRYVADALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDG--VVTEKQLEEIAEHTKVSGGEIVRFLG  239 (331)
T ss_dssp             HHHHHHHHHHHHTSCGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHTT--SSCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCCCHHHceEEEecCCCCCEeeeeecceECCEEHHHHhhcc--cCCHHHHHHHHHHHHhccHHHHHhhc
Confidence            9999999999999999999999999999999999999999999998877542  78888899999999999999999  7


Q ss_pred             cCCcchHHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHH
Q 018760          262 KGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTI  341 (350)
Q Consensus       262 kg~~~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i  341 (350)
                      ||+++|++|.++++++++|++|++.+++++++++|+||++  ++|||+||++|++|++++..++|+++|+++|++|++.|
T Consensus       240 kgst~~~~a~a~~~ii~ai~~~~~~~~~~~v~~~G~~g~~--~~~~~vP~~vg~~Gv~~i~~~~L~~~e~~~l~~s~~~l  317 (331)
T 1pzg_A          240 QGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGLK--DMFIGLPAVIGGAGIERVIELELNEEEKKQFQKSVDDV  317 (331)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGCE--EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHH
T ss_pred             CCCccchHHHHHHHHHHHHHhCCCcEEEEEEEecCccCCC--ceEEEEEEEEeCCeeEEecCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999993  89999999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 018760          342 LEVQSQL  348 (350)
Q Consensus       342 ~~~~~~~  348 (350)
                      ++.++++
T Consensus       318 ~~~~~~~  324 (331)
T 1pzg_A          318 MALNKAV  324 (331)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999875

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=100.00  E-value=1.6e-63  Score=475.60  Aligned_cols=308  Identities=29%  Similarity=0.503  Sum_probs=288.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhc-CCCceEEEcCCccccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILASVDYAVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~-~~~~~v~~t~~~~al~~aDiVIi~~g  114 (350)
                      +++||+|||||+||++++..|+..+++ +|+|+|++++++++.++++.+.... ....++..++|++++++||+||+++|
T Consensus        13 ~~~kI~ViGaG~vG~~iA~~la~~g~~-~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~~al~~aD~VI~avg   91 (328)
T 2hjr_A           13 MRKKISIIGAGQIGSTIALLLGQKDLG-DVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNYEYLQNSDVVIITAG   91 (328)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCHHHHCCCCEEEEcCC
Confidence            347999999999999999999999975 5999999999999888888887542 23557888788999999999999999


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHH
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADH  194 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~  194 (350)
                      .|++||++|.|++.+|++++++++++|.++||++|+|++|||++++|+++++.+|+||+||||+||.+|++|+++++|++
T Consensus        92 ~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~rviG~~t~Ld~~R~~~~la~~  171 (328)
T 2hjr_A           92 VPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLDAMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRA  171 (328)
T ss_dssp             CCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEESCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHhcCCChhhEEEeCcHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             cCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHH--hcCCcchHHHHH
Q 018760          195 LDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVIS--LKGYTSWAIGYS  272 (350)
Q Consensus       195 l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~--~kg~~~~~~a~a  272 (350)
                      +|++|++|+++||||||++++|+||+++++|+|+.+++++ . |++++.++++.++++++++++++  .+|+++|++|.+
T Consensus       172 lgv~~~~v~~~v~G~Hg~t~~p~~s~~~v~G~~~~~~~~~-~-~~~~~~~~~~~~~v~~~g~eii~~~~~gs~~~~~a~a  249 (328)
T 2hjr_A          172 LGVKPSDVSAIVVGGHGDEMIPLTSSVTIGGILLSDFVEQ-G-KITHSQINEIIKKTAFGGGEIVELLKTGSAFYAPAAS  249 (328)
T ss_dssp             HTSCGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHT-T-SSCHHHHHHHHHHHHTHHHHHHHHHSSCCCCHHHHHH
T ss_pred             hCCCHHHeeEEEecCCCCceeeeeeeceECCEEHHHHhhc-c-CCCHHHHHHHHHHHHhhHHHHHhhhCCCchHHHHHHH
Confidence            9999999999999999999999999999999999888765 2 78888899999999999999999  689999999999


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018760          273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL  348 (350)
Q Consensus       273 ~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~  348 (350)
                      +++++++|++|++.+++++++++|+||++  ++|||+||++|++|++++..++|+++|+++|++|++.|++.++++
T Consensus       250 ~~~i~~ai~~~~~~v~~~~v~~~G~~g~~--~~~~~vP~~ig~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~~~~~~  323 (328)
T 2hjr_A          250 AVAMAQAYLKDSKSVLVCSTYLTGQYNVN--NLFVGVPVVIGKNGIEDVVIVNLSDDEKSLFSKSVESIQNLVQDL  323 (328)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEEEESGGGCE--EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcEEEEEEeecCccCCC--ceEEEEEEEEeCCeeEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999983  899999999999999999999999999999999999999999865

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=100.00  E-value=4.3e-63  Score=470.04  Aligned_cols=304  Identities=31%  Similarity=0.538  Sum_probs=277.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeC--CccchHHHHHHHHHHhhcC-CCceEEEcCC--ccccCCCCEEEE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDA--KADKLRGEMLDLQHAAAFL-PRTKILASVD--YAVTAGSDLCIV  111 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~--~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~--~~al~~aDiVIi  111 (350)
                      |||+|+|| |.+|+++++.|+..++..|++|+|+  +++++++.++|+.+...+. ...++..++|  +++++|||+||+
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~   80 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence            69999999 9999999999999988889999999  8888999999999976443 3557776555  689999999999


Q ss_pred             ecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHH
Q 018760          112 TAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLL  191 (350)
Q Consensus       112 ~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~l  191 (350)
                      ++|.|+++|++|.+++.+|+++++++++.+++++ ++|++++|||+|++|++++|++++|++|+||+||.||+.|+++++
T Consensus        81 ~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNPv~~~t~~~~k~~~~p~~rviG~gt~LD~~r~~~~l  159 (313)
T 1hye_A           81 TSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPVDVMTYKALVDSKFERNQVFGLGTHLDSLRFKVAI  159 (313)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSSHHHHHHHHHHHHCCCTTSEEECTTHHHHHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCcHHHHHHHHHHhhCcChhcEEEeCccHHHHHHHHHH
Confidence            9999999999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHH
Q 018760          192 ADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGY  271 (350)
Q Consensus       192 a~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~  271 (350)
                      |+++|++|++|+++||||||++++|+||+++++|+|+.+++.     ++++.++++.++++++++++++.||+++|++|.
T Consensus       160 a~~lgv~~~~v~~~v~G~Hg~~~~p~~s~~~v~g~~~~~~~~-----~~~~~~~~~~~~v~~~g~eii~~kgs~~~~~a~  234 (313)
T 1hye_A          160 AKFFGVHIDEVRTRIIGEHGDSMVPLLSATSIGGIPIQKFER-----FKELPIDEIIEDVKTKGEQIIRLKGGSEFGPAA  234 (313)
T ss_dssp             HHHHTCCGGGEECCEEECSSTTEEECGGGCEETTEEGGGCGG-----GGGCCHHHHHHHHHHHTTSCCC------CCHHH
T ss_pred             HHHhCcCHHHeEEEEeeccCCcccceeeccccCCEEHHHHhc-----CCHHHHHHHHHHHHhccceeecCCCCcHHHHHH
Confidence            999999999999999999999999999999999999987651     344557889999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHhC
Q 018760          272 SAANLARSIIRDQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLG  349 (350)
Q Consensus       272 a~~~ii~ai~~~~~~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~~  349 (350)
                      ++++++++|++|++.+++++++++|+| |++  ++|||+||++|++|++++.+++|+++|+++|++|++.|++.++++.
T Consensus       235 a~~~~~~ai~~~~~~~~~~~~~~~g~~~g~~--~~~~~~P~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~~  311 (313)
T 1hye_A          235 AILNVVRCIVNNEKRLLTLSAYVDGEFDGIR--DVCIGVPVKIGRDGIEEVVSIELDKDEIIAFRKSAEIIKKYCEEVK  311 (313)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEEEEESSSSSCE--EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCeEEEEEEeecceecCcc--ceEEEEEEEEeCCeeEEecCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999 994  8999999999999999999999999999999999999999998763

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=100.00  E-value=3.5e-63  Score=468.80  Aligned_cols=304  Identities=38%  Similarity=0.630  Sum_probs=255.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCCc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQ  117 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~~  117 (350)
                      |||+|||||+||++++..|+..++.++|+|+|++++++++.++++.+...+....++.. ++++++++||+||++++.|+
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~~~~a~~~aDvVIi~~~~~~   79 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH-GGHSELADAQVVILTAGANQ   79 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE-ECGGGGTTCSEEEECC----
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE-CCHHHhCCCCEEEEcCCCCC
Confidence            69999999999999999999999888999999999999988888887654334556664 57889999999999999999


Q ss_pred             CccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcCC
Q 018760          118 IAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDV  197 (350)
Q Consensus       118 ~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~v  197 (350)
                      +||++|.|++.+|++++++++++|.+++|++++|++|||++++++++++.+  |++||||+||+||+.|+++++|+++|+
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~--~~~rviG~gt~Ld~~r~~~~la~~l~v  157 (304)
T 2v6b_A           80 KPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLA--PGQPVIGSGTVLDSARFRHLMAQHAGV  157 (304)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHS--CSSCEEECTTHHHHHHHHHHHHHHHTS
T ss_pred             CCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhC--ChhcEEeCCcCchHHHHHHHHHHHhCc
Confidence            999999999999999999999999999999999999999999999999987  899999999999999999999999999


Q ss_pred             CCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHHHHHH
Q 018760          198 NAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLA  277 (350)
Q Consensus       198 ~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~~~ii  277 (350)
                      +|++|+++||||||++++|+||+++++|+|+.+++++..+.|+++.++++.+++++++++|++.||+++|++|.++++++
T Consensus       158 ~~~~v~~~v~G~Hg~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~eii~~kg~t~~~~a~a~~~~~  237 (304)
T 2v6b_A          158 DGTHAHGYVLGEHGDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIEGKRATYYGIGAALARIT  237 (304)
T ss_dssp             CGGGEECCEEESSSTTEEECGGGCEETTEEHHHHHHHHTCCCSHHHHHHHHHHHTC-----------CCHHHHHHHHHHH
T ss_pred             CHHHceEEEecCCCCceeeehhHccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999999877554323678888999999999999999999999999999999999


Q ss_pred             HHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHhCC
Q 018760          278 RSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI  350 (350)
Q Consensus       278 ~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~~~  350 (350)
                      ++|++|++.++|++++++| ||     +|||+||++|++|++++.+++|+++|+++|++|++.|++.++++.+
T Consensus       238 ~ai~~~~~~~~~~~~~~~g-yg-----~~~~~P~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~~~  304 (304)
T 2v6b_A          238 EAVLRDRRAVLTVSAPTPE-YG-----VSLSLPRVVGRQGVLSTLHPKLTGDEQQKLEQSAGVLRGFKQQLGL  304 (304)
T ss_dssp             HHHHTTCCEEEEEEEEETT-TT-----EEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHhCCCcEEEEEEEECC-cC-----cEEEEEEEEeCCeeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999 85     7999999999999999999999999999999999999999988753

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=100.00  E-value=1.7e-62  Score=463.03  Aligned_cols=290  Identities=34%  Similarity=0.645  Sum_probs=258.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGA  115 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~  115 (350)
                      +++||+|||||+||+++++.++..+++++|+|+|++++ +.+.++|+.+...    .++..++|+++++|||+||+++|.
T Consensus        13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~-~~g~a~dl~~~~~----~~i~~t~d~~~l~~aD~Vi~aag~   87 (303)
T 2i6t_A           13 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEG-TKGATMDLEIFNL----PNVEISKDLSASAHSKVVIFTVNS   87 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC------CHHHHHHHTC----TTEEEESCGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcc-hHHHHHHHhhhcC----CCeEEeCCHHHHCCCCEEEEcCCC
Confidence            34799999999999999999999998899999999998 7778889997431    256667789999999999999999


Q ss_pred             CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHc
Q 018760          116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHL  195 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l  195 (350)
                      + +||++|+|++.+|++++++++++|.++||++|+|++|||++++|++++|++++|++||||+||+||+.|+++++|+++
T Consensus        88 ~-~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP~~~~t~~~~~~~~~p~~rviG~gt~Ld~~R~~~~la~~l  166 (303)
T 2i6t_A           88 L-GSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVL  166 (303)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHHHHHHHHHHTS
T ss_pred             C-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCChHHHHHHHHHHhcCCCHHHeeCCCCCchHHHHHHHHHHHc
Confidence            6 799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHHHH
Q 018760          196 DVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAAN  275 (350)
Q Consensus       196 ~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~~~  275 (350)
                      |++|++|+++|||+||++++|+||+..       +       ++.    +++.++++++++++++.||+++|++|.++++
T Consensus       167 gv~~~~v~~~v~G~Hg~s~~p~~s~~~-------~-------~~~----~~~~~~~~~~g~eii~~kGst~~~~a~a~~~  228 (303)
T 2i6t_A          167 KAQTSGKEVWVIGEQGEDKVLTWSGQE-------E-------VVS----HTSQVQLSNRAMELLRVKGQRSWSVGLSVAD  228 (303)
T ss_dssp             CCTTGGGGEEEEBSCSSSCEEEEBCSS-------C-------CCC----HHHHHHHHHHHHTTSSSCCCCHHHHHHHHHH
T ss_pred             CCChHHeEEEEecCCCCCccccccccc-------c-------ccH----HHHHHHHHHHHHHHHHccCchHHhHHHHHHH
Confidence            999999999999999999999999841       1       233    3456667889999999999999999999999


Q ss_pred             HHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecC-CCCHHHHHHHHHHHHHHHHHHHHhCC
Q 018760          276 LARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNI-HLNQEESHRLRNSAKTILEVQSQLGI  350 (350)
Q Consensus       276 ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~-~L~~~E~~~l~~sa~~i~~~~~~~~~  350 (350)
                      ++++|++|++.+++++++++|+||+| +++|||+||++|++|++++.++ +|+++|+++|++|++.|++.++++.+
T Consensus       229 i~~ai~~~~~~~~~vs~~~~g~yg~~-~~~~~~vP~~ig~~Gv~~i~~~~~l~~~e~~~l~~s~~~l~~~~~~~~~  303 (303)
T 2i6t_A          229 MVDSIVNNKKKVHSVSALAKGYYDIN-SEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSASSIHSLQQQLKL  303 (303)
T ss_dssp             HHHHHHTTCCEEEEEEEECTTSTTCC-SCCEEEEEEEEETTEEEEECCBCC-CCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHcCCCcEEEEEEEeCCccCCC-CCeEEEEEEEEECCccEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999997 5999999999999999999888 89999999999999999999998764

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=100.00  E-value=5.5e-62  Score=461.93  Aligned_cols=302  Identities=37%  Similarity=0.582  Sum_probs=281.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh-cCCCceEEEcCCccccCCCCEEEEecCCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA-FLPRTKILASVDYAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~-~~~~~~v~~t~~~~al~~aDiVIi~~g~~  116 (350)
                      |||+|||||++|++++..|+..++..+|+|+|++++++++..+++.+... .....++..++|++++++||+||++++.|
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~l~~aDvViiav~~p   80 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP   80 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHHHCCCCEEEEeCCCC
Confidence            69999999999999999999976667999999999999988878876532 22355788778887899999999999999


Q ss_pred             cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcC
Q 018760          117 QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLD  196 (350)
Q Consensus       117 ~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~  196 (350)
                      +++|++|.|++.+|+++++++++.|.+++|+++++++|||++++++++++++++|++|+||+||+||+.|+++++|+++|
T Consensus        81 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~~~~~~~~~~~~~~~~~rviG~gt~ld~~r~~~~la~~l~  160 (310)
T 1guz_A           81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELG  160 (310)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHHHHHHCSCGGGEEEECHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchHHHHHHHHHhcCCChHHEEECCCchHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHH--hcCCcchHHHHHHH
Q 018760          197 VNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVIS--LKGYTSWAIGYSAA  274 (350)
Q Consensus       197 v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~--~kg~~~~~~a~a~~  274 (350)
                      ++|++|+++||||||++++|+||+++++|+|+.+++       +++.++++.++++++++++++  .||+++|++|.+++
T Consensus       161 v~~~~v~~~v~G~Hg~~~~p~~s~~~v~g~~~~~~~-------~~~~~~~~~~~v~~~g~~ii~~~~kgs~~~~~a~a~~  233 (310)
T 1guz_A          161 VSMQDINACVLGGHGDAMVPVVKYTTVAGIPISDLL-------PAETIDKLVERTRNGGAEIVEHLKQGSAFYAPASSVV  233 (310)
T ss_dssp             CCGGGEECCEEECSGGGEEECGGGCEETTEEHHHHS-------CHHHHHHHHHHHHTHHHHHHHHHSSSCCCHHHHHHHH
T ss_pred             CCHHHeEEEEEcccCCcEeeeeecccCCCEEHHHHC-------CHHHHHHHHHHHHHhHHHHHhhcCCCCcHHHHHHHHH
Confidence            999999999999999999999999999999987654       456678999999999999999  79999999999999


Q ss_pred             HHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018760          275 NLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL  348 (350)
Q Consensus       275 ~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~  348 (350)
                      +++++|++|++.+++++++++|+||++  ++|||+||++|++|++++.+++|+++|+++|++|++.|++.++++
T Consensus       234 ~~~~ai~~~~~~~~~~~~~~~g~~g~~--~~~~~~P~~ig~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~  305 (310)
T 1guz_A          234 EMVESIVLDRKRVLPCAVGLEGQYGID--KTFVGVPVKLGRNGVEQIYEINLDQADLDLLQKSAKIVDENCKML  305 (310)
T ss_dssp             HHHHHHHTTCCEEEEEEEEEESGGGCE--EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCcEEEEEEeecCccCCc--ceEEEEEEEEeCCeeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999993  899999999999999999999999999999999999999999865

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=100.00  E-value=8.8e-62  Score=459.22  Aligned_cols=288  Identities=25%  Similarity=0.410  Sum_probs=263.2

Q ss_pred             CeEEEEc-CChhHHHHHHHHHhc-CCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEE---cCCccccCCCCEEEEe
Q 018760           38 TKISVIG-TGNVGMAIAQTILTQ-DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA---SVDYAVTAGSDLCIVT  112 (350)
Q Consensus        38 ~KI~IIG-AG~vG~~~a~~l~~~-~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~---t~~~~al~~aDiVIi~  112 (350)
                      |||+||| +|.||+++++.|+++ ++..||+|+|+++ ++++.++||+|..   ...++..   ++++++++|||+||++
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~~---~~~~v~~~~~~~~~~~~~~aDivii~   76 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIP---TAVKIKGFSGEDATPALEGADVVLIS   76 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTSC---SSEEEEEECSSCCHHHHTTCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCCC---CCceEEEecCCCcHHHhCCCCEEEEe
Confidence            7999999 599999999999987 7778999999998 7889999999863   2445654   2457899999999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHH---HHHHhCC-CCCcEeeecCCccHHHHH
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYV---AWKLSGL-PSNRVIGSGTNLDSSRFR  188 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~---~~~~sg~-~~~rviG~g~~ld~~r~~  188 (350)
                      +|.|++||++|+|++.+|+++++++++.|.++||+++++++|||+|++|++   ++|++|+ |++||||+| .||++|++
T Consensus        77 ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd~~t~~a~~~~k~sg~~p~~rv~G~~-~LD~~R~~  155 (312)
T 3hhp_A           77 AGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVT-TLDIIRSN  155 (312)
T ss_dssp             CSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECC-HHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcchhHHHHHHHHHHHcCCCCcceEEEEe-chhHHHHH
Confidence            999999999999999999999999999999999999999999999999999   7889997 999999995 99999999


Q ss_pred             HHHHHHcCCCCcceEEEEEeec-CCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhc---CC
Q 018760          189 FLLADHLDVNAQDVQAYIVGEH-GDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK---GY  264 (350)
Q Consensus       189 ~~la~~l~v~p~~v~~~v~G~h-g~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~k---g~  264 (350)
                      +++|+++|++|++|+++||||| |++++|+||++  +|.|           +++++++++.+++++++++|++.|   |+
T Consensus       156 ~~la~~lgv~~~~v~~~V~G~Hsg~t~vp~~S~~--~g~~-----------~~~~~~~~i~~~v~~~g~eIi~~k~g~gs  222 (312)
T 3hhp_A          156 TFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV--PGVS-----------FTEQEVADLTKRIQNAGTEVVEAKAGGGS  222 (312)
T ss_dssp             HHHHHHHTCCGGGCCCCEEECSSGGGEEECGGGC--TTCC-----------CCHHHHHHHHHHHHTHHHHHHHHTTTSCC
T ss_pred             HHHHHHhCcChhHcceeEEeccCCCceeeecccC--CCCC-----------CCHHHHHHHHHHHHhhhHHHHhhccCCCC
Confidence            9999999999999999999999 88999999998  6654           345678899999999999999988   89


Q ss_pred             cchHHHHHHHHHHHHH---HhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecC-CCCHHHHHHHHHHHHH
Q 018760          265 TSWAIGYSAANLARSI---IRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNI-HLNQEESHRLRNSAKT  340 (350)
Q Consensus       265 ~~~~~a~a~~~ii~ai---~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~-~L~~~E~~~l~~sa~~  340 (350)
                      ++||+|.++++++++|   ++|++.++|++ +.+|+ |.  +++|||+||++|++|++++.++ +|+++|+++|++|++.
T Consensus       223 t~~s~a~a~~~~~~ai~~~l~~~~~v~~~s-~~~g~-g~--~~v~~s~P~~~g~~Gv~~v~~~~~L~~~E~~~l~~s~~~  298 (312)
T 3hhp_A          223 ATLSMGQAAARFGLSLVRALQGEQGVVECA-YVEGD-GQ--YARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDT  298 (312)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTTCSSCEEEE-EEECC-CS--SCSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHcCCCCceEEEE-EecCC-CC--cceEEEeEEEEeCCEEEEEcCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999   78888999999 77766 43  4789999999999999999998 9999999999999999


Q ss_pred             HHHHHHH
Q 018760          341 ILEVQSQ  347 (350)
Q Consensus       341 i~~~~~~  347 (350)
                      |++.+++
T Consensus       299 l~~~i~~  305 (312)
T 3hhp_A          299 LKKDIAL  305 (312)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998874

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=100.00  E-value=4.2e-62  Score=466.14  Aligned_cols=307  Identities=23%  Similarity=0.334  Sum_probs=262.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCC-----eEEEEeCCc--cchHHHHHHHHHHhhcCCCceEEEcCC-ccccCCC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVE-----ELALVDAKA--DKLRGEMLDLQHAAAFLPRTKILASVD-YAVTAGS  106 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~-----ev~L~D~~~--~~l~~~~~dl~~~~~~~~~~~v~~t~~-~~al~~a  106 (350)
                      ++.||+|+|| |++|+++++.|++..++.     ||+|+|+++  +++++.++||+|+.. ....++..+++ +++++||
T Consensus        23 ~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~-~~~~~~~~~~~~~~a~~~a  101 (345)
T 4h7p_A           23 SAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAF-PLLDKVVVTADPRVAFDGV  101 (345)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTC-TTEEEEEEESCHHHHTTTC
T ss_pred             CCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCc-cCCCcEEEcCChHHHhCCC
Confidence            4579999998 999999999999998765     899999987  467899999999863 23345555666 4789999


Q ss_pred             CEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcchHHHHHHHH-hCCCCCcEeeecCCccH
Q 018760          107 DLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDILTYVAWKL-SGLPSNRVIGSGTNLDS  184 (350)
Q Consensus       107 DiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~~~~~~~~-sg~~~~rviG~g~~ld~  184 (350)
                      |+||+++|.|++||++|.|++..|++|++++++.|.++| |+++++++|||+|+++++++++ +|+++.|+||.||.||+
T Consensus       102 dvVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~~~~~~g~~~~r~i~~~t~LDs  181 (345)
T 4h7p_A          102 AIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILLKSAQGKLNPRHVTAMTRLDH  181 (345)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHHTTTCSCGGGEEECCHHHH
T ss_pred             CEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHHHHHccCCCCcceeeeccchhH
Confidence            999999999999999999999999999999999999996 8899999999999999998875 58888888899999999


Q ss_pred             HHHHHHHHHHcCCCCcceEE-EEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcC
Q 018760          185 SRFRFLLADHLDVNAQDVQA-YIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKG  263 (350)
Q Consensus       185 ~r~~~~la~~l~v~p~~v~~-~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg  263 (350)
                      +|++++||+++|++|++|+. +||||||++++|+||+++++|+|+.+++.++  |+.    +++.+++++++++|++.||
T Consensus       182 ~R~~~~la~~~~v~~~~V~~~~V~G~HG~t~vp~~s~a~v~g~~~~~~~~~~--~~~----~~~~~~v~~~g~eIi~~kg  255 (345)
T 4h7p_A          182 NRALSLLARKAGVPVSQVRNVIIWGNHSSTQVPDTDSAVIGTTPAREAIKDD--ALD----DDFVQVVRGRGAEIIQLRG  255 (345)
T ss_dssp             HHHHHHHHHHHTSCGGGEECCEEEBCSSTTCEEECTTCEETTEEGGGGCCC------------HHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHCcChhheecceeecCCCCeEEeeeccceECCccHHHhcchh--hHH----HHHHHHHHhhhhhhhhcCC
Confidence            99999999999999999985 6899999999999999999999999877542  333    3577889999999999988


Q ss_pred             C-cchHHHHHHHHHHHHHHhcCCCeEE--EEEEe-ccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHH
Q 018760          264 Y-TSWAIGYSAANLARSIIRDQRKIHP--VSVLA-KGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAK  339 (350)
Q Consensus       264 ~-~~~~~a~a~~~ii~ai~~~~~~v~~--v~v~~-~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~  339 (350)
                      . +.|++|.++++++++++++.+...+  +.+++ +|+||+| +++|||+||++++++|+.+..++|+++|+++|++|++
T Consensus       256 ~ss~~s~a~a~~~~~~~~l~~~~~~~~vs~~v~s~~g~YGi~-~~v~~s~Pv~~~~G~~~iv~~l~l~~~e~~~l~~s~~  334 (345)
T 4h7p_A          256 LSSAMSAAKAAVDHVHDWIHGTPEGVYVSMGVYSDENPYGVP-SGLIFSFPCTCHAGEWTVVSGKLNGDLGKQRLASTIA  334 (345)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCTTCCC-SSCEEEEEEEEETTEEEECCSCC-----CGGGHHHHH
T ss_pred             CcchhhHHHHHHHHHHHHhcCCCCceEEEEEEEeCCCCcCCC-CCEEEEEEEEEeCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence            5 6799999999999999999765444  44555 5899998 6999999999998788878789999999999999999


Q ss_pred             HHHHHHHHhCC
Q 018760          340 TILEVQSQLGI  350 (350)
Q Consensus       340 ~i~~~~~~~~~  350 (350)
                      +|++++...++
T Consensus       335 ~L~~E~~~AgL  345 (345)
T 4h7p_A          335 ELQEERAQAGL  345 (345)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHcCC
Confidence            99999987764

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=3e-60  Score=451.72  Aligned_cols=307  Identities=38%  Similarity=0.680  Sum_probs=285.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCCc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQ  117 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~~  117 (350)
                      |||+|||+|+||++++..|+..++.++|+|+|++++++++...++.+...+....++..+ +++++++||+||++++.++
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~-d~~~~~~aDvViiav~~~~   79 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG-DYADLKGSDVVIVAAGVPQ   79 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEEC-CGGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeC-CHHHhCCCCEEEEccCCCC
Confidence            699999999999999999999987779999999999998888888876544334566654 7888999999999999999


Q ss_pred             CccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcCC
Q 018760          118 IAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDV  197 (350)
Q Consensus       118 ~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~v  197 (350)
                      ++|++|.|++.+|+++++++++.|.+++|++++|++|||++++++++++.+++|++||||++|.||+.|+++++|+++|+
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~~~~~~~~~~rviG~~t~ld~~r~~~~la~~lgv  159 (319)
T 1a5z_A           80 KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGF  159 (319)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCTTTEEECTTHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHHHHHHHHHHhCCChhhEEeeCccHHHHHHHHHHHHHhCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHHHHHHH
Q 018760          198 NAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLA  277 (350)
Q Consensus       198 ~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a~~~ii  277 (350)
                      +|++|+++|||+||++++|+||+++++|+|+.++++... +++++.++++.++++++++++++.||+++|++|.++++++
T Consensus       160 ~~~~v~~~v~G~hg~~~~p~~s~~~v~G~~~~~~~~~~~-~~~~~~~~~~~~~v~~~g~eii~~kg~~~~~~a~a~~~~~  238 (319)
T 1a5z_A          160 SPRSVHVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQ-KCDSKILENFAEKTKRAAYEIIERKGATHYAIALAVADIV  238 (319)
T ss_dssp             CGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHTTSS-SCCHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             CHHHceEEEEeCCCCCcccchhhceECCEEHHHHhhccc-ccCHHHHHHHHHHHHHhhhhhhccCCchHHHHHHHHHHHH
Confidence            999999999999999999999999999999988865321 2577788999999999999999999999999999999999


Q ss_pred             HHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018760          278 RSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL  348 (350)
Q Consensus       278 ~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~  348 (350)
                      ++|++|++.+++++++++|+||++  ++|||+||++|++|++++..++|+++|+++|++|++.|++.++++
T Consensus       239 ~ai~~~~~~~~~~~~~~~g~~g~~--~~~~~vP~~vg~~Gv~~i~~~~L~~~e~~~l~~s~~~l~~~~~~~  307 (319)
T 1a5z_A          239 ESIFFDEKRVLTLSVYLEDYLGVK--DLCISVPVTLGKHGVERILELNLNEEELEAFRKSASILKNAINEI  307 (319)
T ss_dssp             HHHHTTCCEEEEEEEEESSBTTBC--SEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEEEEecCccCcc--ceEEEEEEEEeCCceEEEecCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999993  899999999999999999999999999999999999999999875

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=100.00  E-value=1.8e-61  Score=461.20  Aligned_cols=304  Identities=19%  Similarity=0.294  Sum_probs=268.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCe-----EEEEeCCc--cchHHHHHHHHHHh-hcCCCceEEEcCC-ccccCC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEE-----LALVDAKA--DKLRGEMLDLQHAA-AFLPRTKILASVD-YAVTAG  105 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~e-----v~L~D~~~--~~l~~~~~dl~~~~-~~~~~~~v~~t~~-~~al~~  105 (350)
                      +++||+|+|| |.||+++++.|+..+++++     |+|+|+++  +++++.++||+|+. ++.  ..+..+++ +++++|
T Consensus         2 ~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~--~~~~~~~~~~~~~~d   79 (333)
T 5mdh_A            2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL--KDVIATDKEEIAFKD   79 (333)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTE--EEEEEESCHHHHTTT
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhccc--CCEEEcCCcHHHhCC
Confidence            5689999995 9999999999999998888     99999975  58999999999974 222  34444444 689999


Q ss_pred             CCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCe-EEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccH
Q 018760          106 SDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDC-ILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDS  184 (350)
Q Consensus       106 aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a-~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~  184 (350)
                      ||+||+++|.|++||++|.|++.+|+++++++++.+.+++|++ |+|++|||+|++|++++|+++.+|+|+||.||.||+
T Consensus        80 aDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~~t~~~~~~~~~~p~~~ig~~t~LDs  159 (333)
T 5mdh_A           80 LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDH  159 (333)
T ss_dssp             CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHHH
T ss_pred             CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchHHHHHHHHHHcCCCCcCEEEEEEhHHH
Confidence            9999999999999999999999999999999999999999998 699999999999999999986555666899999999


Q ss_pred             HHHHHHHHHHcCCCCcceEEE-EEeecCCceeeeecceee--cCccc--cccchhhhccCCHHHHHHHHHHHHhhHHHHH
Q 018760          185 SRFRFLLADHLDVNAQDVQAY-IVGEHGDSSVALWSSISV--GGVPI--LSFLEKQQIAYEKETLESIHKEVVDSAYEVI  259 (350)
Q Consensus       185 ~r~~~~la~~l~v~p~~v~~~-v~G~hg~~~vp~~S~~~v--~g~p~--~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~  259 (350)
                      +|+++++|+++|++|++|+++ ||||||++++|+||++++  +|.|+  .+++.+.     ....+++.+++++++++|+
T Consensus       160 ~R~~~~la~~l~v~~~~v~~~vV~GeHgds~vp~~S~a~v~i~g~~~~~~~~~~~~-----~~~~~~~~~~v~~~g~eIi  234 (333)
T 5mdh_A          160 NRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDD-----SWLKGEFITTVQQRGAAVI  234 (333)
T ss_dssp             HHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECTTCEEECSSCEEEHHHHHCCH-----HHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCHHHeeecEEEEcCCCCEEEeeeccEeccCCeeccHHHhhccc-----cccHHHHHHHHHHHHHHHH
Confidence            999999999999999999987 599999999999999985  68765  3444321     1124578889999999999


Q ss_pred             HhcC-CcchHHHHHHHHHHHHHHhcC--CCeEEEEEEecc-ccCCCCCCeEEEEeEEEcCCceEEeec-CCCCHHHHHHH
Q 018760          260 SLKG-YTSWAIGYSAANLARSIIRDQ--RKIHPVSVLAKG-FYGIDGGDVFLSLPAQLGRGGVLGVTN-IHLNQEESHRL  334 (350)
Q Consensus       260 ~~kg-~~~~~~a~a~~~ii~ai~~~~--~~v~~v~v~~~g-~~gi~~~~~~~s~Pv~ig~~Gv~~v~~-~~L~~~E~~~l  334 (350)
                      +.|| ++.|++|.++++++++|++++  +.++||+++++| +||++ +++|||+||++ ++|++++.+ ++|+++|+++|
T Consensus       235 ~~k~~ssa~~~a~~~~~~~~~il~~~~~~~v~~~s~~~~G~~YGi~-~~v~~s~P~~~-~~Gv~~iv~~l~L~~~E~~~l  312 (333)
T 5mdh_A          235 KARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVP-DDLLYSFPVTI-KDKTWKIVEGLPINDFSREKM  312 (333)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCSSSCC-SSCEEEEEEEE-ETTEEEECCCCCCCHHHHHHH
T ss_pred             HccCchHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCcccCCC-CCeEEEEEEEE-cCCeEEEcCCCCCCHHHHHHH
Confidence            9776 578999999999999999986  479999999999 99997 58999999999 999999886 99999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 018760          335 RNSAKTILEVQSQL  348 (350)
Q Consensus       335 ~~sa~~i~~~~~~~  348 (350)
                      ++|++.|++.+++.
T Consensus       313 ~~sa~~L~~~~~~~  326 (333)
T 5mdh_A          313 DLTAKELAEEKETA  326 (333)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998753

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=100.00  E-value=1.1e-58  Score=442.78  Aligned_cols=306  Identities=18%  Similarity=0.307  Sum_probs=274.6

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCC-----CeEEEEeCC----ccchHHHHHHHHHHhhcCCCceEEEcCCc-cc
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFV-----EELALVDAK----ADKLRGEMLDLQHAAAFLPRTKILASVDY-AV  102 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~-----~ev~L~D~~----~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~a  102 (350)
                      .+++|||+|||| |.+|+++++.|+..++.     .+|+|+|++    ++++++.++|+.|... ....++..+++. ++
T Consensus         2 ~~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~-~~~~~i~~~~~~~~a   80 (329)
T 1b8p_A            2 AKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAF-PLLAGMTAHADPMTA   80 (329)
T ss_dssp             -CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTC-TTEEEEEEESSHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcc-cccCcEEEecCcHHH
Confidence            345789999998 99999999999998865     399999999    8888999999998531 112466666674 78


Q ss_pred             cCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcchHHHHHHHHh-CCCCCcEeeecC
Q 018760          103 TAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDILTYVAWKLS-GLPSNRVIGSGT  180 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~~~~~~~~s-g~~~~rviG~g~  180 (350)
                      ++|||+||+++|.++++|++|.+++.+|+++++++++.+.++| |++++|++|||+|++|+++++++ |+|++|++|+ |
T Consensus        81 l~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~~~~~~~~p~~~v~g~-t  159 (329)
T 1b8p_A           81 FKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAM-L  159 (329)
T ss_dssp             TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEEC-C
T ss_pred             hCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHHHHHcCCCCHHHEEEe-e
Confidence            9999999999999999999999999999999999999999997 99999999999999999999998 8999999887 9


Q ss_pred             CccHHHHHHHHHHHcCCCCcceEE-EEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHH
Q 018760          181 NLDSSRFRFLLADHLDVNAQDVQA-YIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVI  259 (350)
Q Consensus       181 ~ld~~r~~~~la~~l~v~p~~v~~-~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~  259 (350)
                      .+|+.|+++++|+++|++|++|+. +||||||++++|+||+++++|+|+.+++++.. |    ..+++.+++++++++|+
T Consensus       160 ~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg~s~~p~~s~~~v~g~~~~~~~~~~~-~----~~~~i~~~v~~~g~eii  234 (329)
T 1b8p_A          160 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDA-W----NRDTFLPTVGKRGAAII  234 (329)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEESCEEEBCSSTTCEEECSSCEETTEEHHHHHCCHH-H----HHHTHHHHHHTHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcCHHHceEEEEEeccCCcEeeehHHCeECCeeHHHHhccch-h----hHHHHHHHHHHHHHhhh
Confidence            999999999999999999999995 68999999999999999999999987664321 1    24678889999999999


Q ss_pred             HhcCCcchH-HHHHHHHHHHHHHhc-CCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeec-CCCCHHHHHHHHH
Q 018760          260 SLKGYTSWA-IGYSAANLARSIIRD-QRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTN-IHLNQEESHRLRN  336 (350)
Q Consensus       260 ~~kg~~~~~-~a~a~~~ii~ai~~~-~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~-~~L~~~E~~~l~~  336 (350)
                      +.||.++|+ .|.++++++++|+++ ++.+++++++++|+||+| +++|||+||++ ++|++++.+ ++|+++|+++|++
T Consensus       235 ~~kg~~~~~~~a~a~~~~~~ai~~~~~~~~~~~s~~~~g~yg~~-~~~~~s~P~~i-~~Gv~~i~~~~~l~~~e~~~l~~  312 (329)
T 1b8p_A          235 DARGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIP-EGVIFGFPVTT-ENGEYKIVQGLSIDAFSQERINV  312 (329)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHCCTTCCEEEEEECCSGGGCC-TTCEEEEEEEE-ETTEEEECCCCCCCHHHHHHHHH
T ss_pred             hccCCChHHHHHHHHHHHHHHHhcCCCCcEEEEEEEecCccCCC-CCeEEEEEEEE-cCCEEEecCCCCCCHHHHHHHHH
Confidence            999987776 456899999999998 899999999999999997 59999999999 999999987 9999999999999


Q ss_pred             HHHHHHHHHHHh
Q 018760          337 SAKTILEVQSQL  348 (350)
Q Consensus       337 sa~~i~~~~~~~  348 (350)
                      |++.|++.++.+
T Consensus       313 s~~~l~~~~~~~  324 (329)
T 1b8p_A          313 TLNELLEEQNGV  324 (329)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998754

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=100.00  E-value=4.5e-58  Score=435.48  Aligned_cols=289  Identities=21%  Similarity=0.373  Sum_probs=261.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEE---cCCcc-ccCCCCEEEEe
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA---SVDYA-VTAGSDLCIVT  112 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~---t~~~~-al~~aDiVIi~  112 (350)
                      |||+|||| |++|++++..|+..++..+|+|+|+++  .++.++||.|...   ..++..   ++|++ +++|||+||++
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~~~~---~~~l~~~~~t~d~~~a~~~aDvVvi~   75 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIET---RATVKGYLGPEQLPDCLKGCDVVVIP   75 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSSS---SCEEEEEESGGGHHHHHTTCSEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHHHhccCc---CceEEEecCCCCHHHHhCCCCEEEEC
Confidence            69999998 999999999999998888999999998  6778889988652   335555   35775 79999999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHH----HHHHHHhCCCCCcEeeecCCccHHHHH
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILT----YVAWKLSGLPSNRVIGSGTNLDSSRFR  188 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~----~~~~~~sg~~~~rviG~g~~ld~~r~~  188 (350)
                      +|.|+++|++|.|++.+|+++++++++.|.+++|++|+|++|||+|++|    +++++.+++|++||||+ |.||+.|++
T Consensus        76 ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~~~~~~~~~~~p~~rvig~-t~Ld~~r~~  154 (314)
T 1mld_A           76 AGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGV-TTLDIVRAN  154 (314)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEEC-CHHHHHHHH
T ss_pred             CCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCcchhHHHHHHHHHHcCCCCcceEEEe-ecccHHHHH
Confidence            9999999999999999999999999999999999999999999999998    45667788999999999 999999999


Q ss_pred             HHHHHHcCCCCcceEEEEEeec-CCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhc---CC
Q 018760          189 FLLADHLDVNAQDVQAYIVGEH-GDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK---GY  264 (350)
Q Consensus       189 ~~la~~l~v~p~~v~~~v~G~h-g~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~k---g~  264 (350)
                      +++|+++|++|++|+++||||| |++++|+||+++    |+.+        ++++.++++.+++++++++|++.|   |+
T Consensus       155 ~~la~~l~v~~~~v~~~v~G~H~G~~~~p~~s~~~----~~~~--------~~~~~~~~~~~~v~~~g~eii~~k~~~g~  222 (314)
T 1mld_A          155 AFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCT----PKVD--------FPQDQLSTLTGRIQEAGTEVVKAKAGAGS  222 (314)
T ss_dssp             HHHHHHTTCCGGGCBCCEEECSSGGGEEECGGGCB----SCCC--------CCHHHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred             HHHHHHhCcChHhEEEEEccCCCCCcEeeecccCC----Cccc--------CCHHHHHHHHHHHHHHHHHHHhhhcCCCC
Confidence            9999999999999999999999 899999999997    4322        567778999999999999999955   78


Q ss_pred             cchHHHHHHHHHHHHHHhc---CCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecC-CCCHHHHHHHHHHHHH
Q 018760          265 TSWAIGYSAANLARSIIRD---QRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNI-HLNQEESHRLRNSAKT  340 (350)
Q Consensus       265 ~~~~~a~a~~~ii~ai~~~---~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~-~L~~~E~~~l~~sa~~  340 (350)
                      ++|++|.++++++++|++|   ++.++++ ++++|+|  + +++|||+||++|++|++++.++ +|+++|+++|++|++.
T Consensus       223 t~~~~a~a~~~~~~ai~~~~~g~~~v~~~-~~~~g~y--~-~~~~~~~P~~ig~~Gv~~i~~l~~l~~~e~~~l~~s~~~  298 (314)
T 1mld_A          223 ATLSMAYAGARFVFSLVDAMNGKEGVVEC-SFVKSQE--T-DCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPE  298 (314)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTCTTCEEE-EEEECCS--S-SSSEEEEEEEEETTEEEEECCCCSCCHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHcCcCCCcceEEE-EEeCCcc--C-CceEEEEEEEEeCCeeEEecCCCCCCHHHHHHHHHHHHH
Confidence            8999999999999999998   4478999 7899999  4 5899999999999999999888 9999999999999999


Q ss_pred             HHHHHHHh
Q 018760          341 ILEVQSQL  348 (350)
Q Consensus       341 i~~~~~~~  348 (350)
                      |++.++++
T Consensus       299 l~~~~~~~  306 (314)
T 1mld_A          299 LKASIKKG  306 (314)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=100.00  E-value=3.8e-57  Score=430.00  Aligned_cols=310  Identities=31%  Similarity=0.525  Sum_probs=285.4

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhc-CCCceEEEcCCccccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILASVDYAVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~-~~~~~v~~t~~~~al~~aDiVIi~~  113 (350)
                      ++++||+|||||+||++++..|+..++. +|+|+|++++++++...++.+...+ ....++..++|++++++||+||+++
T Consensus         2 ~~~~kI~VIGaG~~G~~ia~~la~~g~~-~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~a~~~aDiVi~av   80 (317)
T 2ewd_A            2 IERRKIAVIGSGQIGGNIAYIVGKDNLA-DVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDYADISGSDVVIITA   80 (317)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCc-eEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCHHHhCCCCEEEEeC
Confidence            4568999999999999999999999864 7999999999998877788765422 1245677777888899999999999


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHH
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLAD  193 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~  193 (350)
                      |.|+++|++|.|++.+|.+++++++++|.+++|+++++++|||++++++.+++.+++||+||+|++|.+|+.|+++.+|+
T Consensus        81 g~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~~~~~~~~~~rviG~~t~ld~~r~~~~la~  160 (317)
T 2ewd_A           81 SIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQ  160 (317)
T ss_dssp             CCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHCCCGGGEEESCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHhhCCCHHHEEeccCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHH--hcCCcchHHHH
Q 018760          194 HLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVIS--LKGYTSWAIGY  271 (350)
Q Consensus       194 ~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~--~kg~~~~~~a~  271 (350)
                      ++|++++++.++|+|+||++++|+||.++++|+|+.+++.+.  +++.++++++.++++.+++++++  ++|.+.|++|.
T Consensus       161 ~lg~~~~~v~~~v~g~Hg~~~~~~~~~a~v~g~~~~~~~~~g--~~~~~~id~~~~~~~~~~~ei~~~~g~g~~~~~~a~  238 (317)
T 2ewd_A          161 HFGVNASDVSANVIGGHGDGMVPATSSVSVGGVPLSSFIKQG--LITQEQIDEIVCHTRIAWKEVADNLKTGTAYFAPAA  238 (317)
T ss_dssp             HHTSCGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHTT--SSCHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHH
T ss_pred             HhCcChhhceEEEEecCCCceeEEeeccccCCEEHHHHHhcc--CCCHHHHHHHHHHHHhhHHHHHHhhcCCchHHHHHH
Confidence            999999999999999999999999999999999998877543  57888899998888889999998  57788999999


Q ss_pred             HHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHhC
Q 018760          272 SAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLG  349 (350)
Q Consensus       272 a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~~  349 (350)
                      ++++++++|++|++.++|++++++|+||++  ++|||+||++|++|++++..++|+++|+++|++|++.|++.++++.
T Consensus       239 a~~~~~~ai~~~~~~~~~~~~~~~G~~g~~--~~~~~~P~~i~~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~~  314 (317)
T 2ewd_A          239 AAVKMAEAYLKDKKAVVPCSAFCSNHYGVK--GIYMGVPTIIGKNGVEDILELDLTPLEQKLLGESINEVNTISKVLD  314 (317)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEEEESSSTTCS--SEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCeEEEEEEEecCccCCc--ceEEEeEEEEcCCeeEEecCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999993  8999999999999999999999999999999999999999998763

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=100.00  E-value=2.4e-56  Score=425.84  Aligned_cols=292  Identities=24%  Similarity=0.372  Sum_probs=262.1

Q ss_pred             CCCCeEEEEc-CChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEE---cCCc-cccCCCCEE
Q 018760           35 KRHTKISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA---SVDY-AVTAGSDLC  109 (350)
Q Consensus        35 ~~~~KI~IIG-AG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~---t~~~-~al~~aDiV  109 (350)
                      .++|||+||| +|.+|++++..|+..+++.+|+|+|++++  ++.++|+.+...   ..++..   ++|+ +++++||+|
T Consensus         6 ~~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~--~~~~~dL~~~~~---~~~v~~~~~t~d~~~al~gaDvV   80 (326)
T 1smk_A            6 APGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADISHMDT---GAVVRGFLGQQQLEAALTGMDLI   80 (326)
T ss_dssp             --CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH--HHHHHHHHTSCS---SCEEEEEESHHHHHHHHTTCSEE
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc--HhHHHHhhcccc---cceEEEEeCCCCHHHHcCCCCEE
Confidence            3568999999 59999999999999887779999999887  667888887542   224544   4466 679999999


Q ss_pred             EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch----HHHHHHHHhCCCCCcEeeecCCccHH
Q 018760          110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI----LTYVAWKLSGLPSNRVIGSGTNLDSS  185 (350)
Q Consensus       110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~----~~~~~~~~sg~~~~rviG~g~~ld~~  185 (350)
                      |+++|.|+++|++|.+++.+|+++++++++++.+++|++|++++|||+|+    +++++++.+++|++||||+ |.||+.
T Consensus        81 i~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~t~~~~~~~~~p~~rviG~-~~Ld~~  159 (326)
T 1smk_A           81 IVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGV-TMLDVV  159 (326)
T ss_dssp             EECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHHHHTCCCTTSEEEC-CHHHHH
T ss_pred             EEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCchHHHHHHHHHHHHHccCCCcccEEEE-eehHHH
Confidence            99999999999999999999999999999999999999999999999999    5666688899999999999 999999


Q ss_pred             HHHHHHHHHcCCCCcceEEEEEeec-CCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhc--
Q 018760          186 RFRFLLADHLDVNAQDVQAYIVGEH-GDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLK--  262 (350)
Q Consensus       186 r~~~~la~~l~v~p~~v~~~v~G~h-g~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~k--  262 (350)
                      |+++++|+++|++|++|+++||||| |++++|+||++++..            .++++.++++.+++++++++|++.|  
T Consensus       160 r~~~~la~~l~v~~~~v~~~v~G~H~G~~~~p~~s~~~v~~------------~~~~~~~~~~~~~v~~~g~eii~~k~~  227 (326)
T 1smk_A          160 RANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPS------------SFTQEEISYLTDRIQNGGTEVVEAKAG  227 (326)
T ss_dssp             HHHHHHHHHHTCCGGGCBCCEEECSSGGGEEECGGGCBSCC------------CCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhCcChhheEEEEecccCCceEEEecccCeecC------------cCCHHHHHHHHHHHHHHHHHHHhcccC
Confidence            9999999999999999999999999 999999999998742            1457778999999999999999976  


Q ss_pred             -CCcchHHHHHHHHHHHHH---HhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeec-CCCCHHHHHHHHHH
Q 018760          263 -GYTSWAIGYSAANLARSI---IRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTN-IHLNQEESHRLRNS  337 (350)
Q Consensus       263 -g~~~~~~a~a~~~ii~ai---~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~-~~L~~~E~~~l~~s  337 (350)
                       |+++|++|.++++++++|   ++|++.+++++ +++|+  ++ +++|||+||++|++|++++.+ ++|+++|+++|++|
T Consensus       228 ~gs~~~~~a~a~~~~~~ai~~~~~~~~~v~~~~-~~~g~--~~-~~~~~~vP~~ig~~Gv~~i~~~~~L~~~e~~~l~~s  303 (326)
T 1smk_A          228 AGSATLSMAYAAVKFADACLRGLRGDAGVIECA-FVSSQ--VT-ELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKA  303 (326)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHTCSCEEEEE-EEECC--SS-SSSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCCCCeEEEEE-eeccc--cC-CceEEEEEEEEeCCeeEEEcCCCCCCHHHHHHHHHH
Confidence             888999999999999999   99999999998 68887  45 589999999999999999999 89999999999999


Q ss_pred             HHHHHHHHHHh
Q 018760          338 AKTILEVQSQL  348 (350)
Q Consensus       338 a~~i~~~~~~~  348 (350)
                      ++.|++.++++
T Consensus       304 ~~~l~~~~~~~  314 (326)
T 1smk_A          304 KKELAGSIEKG  314 (326)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999864

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=5.8e-56  Score=420.41  Aligned_cols=299  Identities=30%  Similarity=0.532  Sum_probs=268.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEEEEecCCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiVIi~~g~~  116 (350)
                      |||+|||+|+||++++..|+..++..+|+|+|++++++++...++.+...+. ...++. +++++++++||+||++++.+
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~d~~~~~~aDvViiav~~~   80 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV-INDWAALADADVVISTLGNI   80 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEE-ESCGGGGTTCSEEEECCSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEE-eCCHHHhCCCCEEEEecCCc
Confidence            7999999999999999999998866799999999999988888887765432 234554 35778899999999999999


Q ss_pred             cC----ccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHH
Q 018760          117 QI----AGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLA  192 (350)
Q Consensus       117 ~~----~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la  192 (350)
                      ++    ||++|.+++.+|+++++++++.+.+++|++++|++|||++++++++++.+++|++||+|+||.+|+.|+++.++
T Consensus        81 ~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~~~~~~~~~~rvig~gt~ld~~r~~~~~a  160 (309)
T 1hyh_A           81 KLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITALFQHVTGFPAHKVIGTGTLLDTARMQRAVG  160 (309)
T ss_dssp             GGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCcHHHHHHHHHHhcCCCHHHEeecCccchHHHHHHHHH
Confidence            88    99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHH
Q 018760          193 DHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS  272 (350)
Q Consensus       193 ~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a  272 (350)
                      +.+++++++|++++||+||++++|+||+++++|.|+.++.+     ++++.++++.++++++++++++.||+++|++|.+
T Consensus       161 ~~l~~~~~~v~~~v~G~hg~~~~~~~s~~~v~g~~~~~~~~-----~~~~~~~~~~~~v~~~g~~ii~~kg~~~~~~a~a  235 (309)
T 1hyh_A          161 EAFDLDPRSVSGYNLGEHGNSQFVAWSTVRVMGQPIVTLAD-----AGDIDLAAIEEEARKGGFTVLNGKGYTSYGVATS  235 (309)
T ss_dssp             HHHTCCGGGCBCCEEBCTTTTCEECTTTCEETTEEGGGC----------CCHHHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             HHhCCChhheEEEEEeCCCCcEeeccccceECCEEHHHhcc-----CCHHHHHHHHHHHHHhHHHHHhccCCchHHHHHH
Confidence            99999999999999999999999999999999999988753     3456678899999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018760          273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL  348 (350)
Q Consensus       273 ~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~  348 (350)
                      +++++++|++|++.+++++++++|    +  ++|+|+||+++++|++++.+++|+++|+++|++|++.|++.++++
T Consensus       236 ~~~~~~ai~~~~~~~~~~~~~~~g----~--~~~~~vP~~i~~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~  305 (309)
T 1hyh_A          236 AIRIAKAVMADAHAELVVSNRRDD----M--GMYLSYPAIIGRDGVLAETTLDLTTDEQEKLLQSRDYIQQRFDEI  305 (309)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEECTT----T--CSEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcEEEEEEEECC----C--CeEEEEEEEEeCCceEEEeCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998    2  789999999999999999899999999999999999999999865

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=100.00  E-value=7.6e-50  Score=379.36  Aligned_cols=315  Identities=41%  Similarity=0.705  Sum_probs=283.7

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEec
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTA  113 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~  113 (350)
                      ++++|||+|||||+||++++..|+..+..++|+|+|++++++++.+.++.+...+....++..+++++++++||+||+++
T Consensus         4 ~~~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii~v   83 (319)
T 1lld_A            4 TVKPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITA   83 (319)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEECC
Confidence            44568999999999999999999999877799999999988887777777765433345677666788899999999999


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHH
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLAD  193 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~  193 (350)
                      +.+.++|++|.+++.+|+++++++++.|.+++|++++++++||++.+++++++.+++|++||+|.+|.+++.|++..+++
T Consensus        84 ~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~~~~~~~~~~~~~~~~~~vig~~~~l~~~r~~~~~a~  163 (319)
T 1lld_A           84 GPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQ  163 (319)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHTCCTTSEEECTTHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCchHHHHHHHHHhcCCCHHHEeeccccHhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998889999999999999999999999999


Q ss_pred             HcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhcc-CCHHHHHHHHHHHHhhHHHHHHhcCCcchHHHHH
Q 018760          194 HLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIA-YEKETLESIHKEVVDSAYEVISLKGYTSWAIGYS  272 (350)
Q Consensus       194 ~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~-~~~~~~~~i~~~v~~~~~~v~~~kg~~~~~~a~a  272 (350)
                      .+++++.++..++||+||+.++|+||++.+++.|+.+++....+. .+++.++++.+++++.+++|++.+|.+.|+++.+
T Consensus       164 ~~~v~~~~v~~~~~G~~g~~~~~~w~k~~in~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~~~G~~~~~~a~~  243 (319)
T 1lld_A          164 QTGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGKGATNYAIGMS  243 (319)
T ss_dssp             HHTCCGGGEECCEEBSSSTTCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHTSCCSCCHHHHHH
T ss_pred             HhCCCHHHeEEEEEeCCCCceeeeeecceECCccHHHHHhccccccCCHHHHHHHHHHHHHhhHhhhhCCCCchHHHHHH
Confidence            999999999999999999999999999999999998876443322 3445578888899999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHHhCC
Q 018760          273 AANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI  350 (350)
Q Consensus       273 ~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~~~~  350 (350)
                      .++++++|+++.+.++++|++++|+|+..  +.++++||.++++|++++.+++|+++|+++|++|++.|++.++++++
T Consensus       244 ~~sm~~di~~~~~~ei~~s~~~~G~~~~~--~~~~gvp~~~~~~Gv~~i~~~~l~~~e~~~l~~s~~~l~~~~~~~~~  319 (319)
T 1lld_A          244 GVDIIEAVLHDTNRILPVSSMLKDFHGIS--DICMSVPTLLNRQGVNNTINTPVSDKELAALKRSAETLKETAAQFGF  319 (319)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEECSSBTTBC--SSEEEEEEEEETTEEECCSCCCCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHcCCCcEEEEEEEecCcCCcc--ceEEEEEEEEeCCeeEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999874  79999999999999999999999999999999999999999998864

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=100.00  E-value=8.5e-50  Score=390.90  Aligned_cols=300  Identities=18%  Similarity=0.229  Sum_probs=249.3

Q ss_pred             CCeEEEEcCChhHHHH--HHHHHh--cCC-CCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEE
Q 018760           37 HTKISVIGTGNVGMAI--AQTILT--QDF-VEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCI  110 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~--a~~l~~--~~~-~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVI  110 (350)
                      ++||+|||||++ .+.  +..|+.  .++ .+||+|+|+++++++. +.++.+...... .++..++|+ ++++||||||
T Consensus         2 ~~KI~IIGaG~v-~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~-~~~~~~~~~~~~-~~v~~t~d~~~al~~AD~Vi   78 (417)
T 1up7_A            2 HMRIAVIGGGSS-YTPELVKGLLDISEDVRIDEVIFYDIDEEKQKI-VVDFVKRLVKDR-FKVLISDTFEGAVVDAKYVI   78 (417)
T ss_dssp             CCEEEEETTTCT-THHHHHHHHHHHTTTSCCCEEEEECSCHHHHHH-HHHHHHHHHTTS-SEEEECSSHHHHHTTCSEEE
T ss_pred             CCEEEEECCCHH-HHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHH-HHHHHHHHhhCC-eEEEEeCCHHHHhCCCCEEE
Confidence            579999999987 333  345566  666 7899999999999986 778877654323 788888887 8899999999


Q ss_pred             EecCCCcCccccHHH--------------------HHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCC
Q 018760          111 VTAGARQIAGESRLN--------------------LLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGL  170 (350)
Q Consensus       111 i~~g~~~~~g~~r~~--------------------~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~  170 (350)
                      +++|.+++++++|++                    ++.+|+++++++++.|+++| |||+|++|||++++|++++|++  
T Consensus        79 itagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~-~A~lin~TNPvdi~t~a~~k~~--  155 (417)
T 1up7_A           79 FQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS-NATIVNFTNPSGHITEFVRNYL--  155 (417)
T ss_dssp             ECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECSSSHHHHHHHHHHTT--
T ss_pred             EcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC-CEEEEEeCChHHHHHHHHHHhC--
Confidence            999999988888743                    36899999999999999999 9999999999999999999986  


Q ss_pred             CCCcEeeecCCccHHHHHHHHHHHcCCCCcceEEEEEe-----------ecCCceeeeecce---eecC---cccc-ccc
Q 018760          171 PSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVG-----------EHGDSSVALWSSI---SVGG---VPIL-SFL  232 (350)
Q Consensus       171 ~~~rviG~g~~ld~~r~~~~la~~l~v~p~~v~~~v~G-----------~hg~~~vp~~S~~---~v~g---~p~~-~~~  232 (350)
                      |++||||+ |+.. .|+++.+|+.+|++|++|+++++|           +||++++|.||..   ++++   .|+. +++
T Consensus       156 p~~rviG~-c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~~~~hG~d~~p~~~~~~~~~~~~~~~~~~~~~~~  233 (417)
T 1up7_A          156 EYEKFIGL-CNVP-INFIREIAEMFSARLEDVFLKYYGLNHLSFIEKVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFY  233 (417)
T ss_dssp             CCSSEEEC-CSHH-HHHHHHHHHHTTCCGGGEEEEEEEETTEEEEEEEEETTEECHHHHHHHHTTC---CCTTSCCHHHH
T ss_pred             CCCCEEEe-CCCH-HHHHHHHHHHhCCCHHHCeEEEEeecceeeEEEeecCCcEehhhHHHHHHHhhCCCcCCchHHHHH
Confidence            77799999 5543 699999999999999999999999           9999999999986   6655   6762 332


Q ss_pred             hhhh---------ccCCHHHHHHH---------HHHHHhhHHHHH----------HhcCCcchHHHHHHHHHHHHHHhcC
Q 018760          233 EKQQ---------IAYEKETLESI---------HKEVVDSAYEVI----------SLKGYTSWAIGYSAANLARSIIRDQ  284 (350)
Q Consensus       233 ~~~~---------~~~~~~~~~~i---------~~~v~~~~~~v~----------~~kg~~~~~~a~a~~~ii~ai~~~~  284 (350)
                      +...         +.++++.++++         .+++++++++++          +.||++.|  +.+++++++||++|+
T Consensus       234 ~~~g~~p~~y~~~y~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~~~~l~~kg~t~~--~~~a~~ii~AI~~d~  311 (417)
T 1up7_A          234 DSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELTKRGGSMY--STAAAHLIRDLETDE  311 (417)
T ss_dssp             HHHCSEECGGGHHHHTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGGGGSTTTTH--HHHHHHHHHHHHSSS
T ss_pred             HhcCCCccchhhhccCCHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccchhhhhcCCcHH--HHHHHHHHHHHHcCC
Confidence            2110         11234555554         466777788988          45676654  799999999999999


Q ss_pred             CCeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Q 018760          285 RKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQ  347 (350)
Q Consensus       285 ~~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~~~~  347 (350)
                      +.++++|++++|+| |+| +|+++|+||+||++|++++..++|+++|+++|++++...+..++.
T Consensus       312 ~~~~~vsv~n~G~i~~lp-~d~~vevP~~vg~~Gi~~i~~~~L~~~e~~~l~~~~~~e~l~veA  374 (417)
T 1up7_A          312 GKIHIVNTRNNGSIENLP-DDYVLEIPCYVRSGRVHTLSQGKGDHFALSFIHAVKMYERLTIEA  374 (417)
T ss_dssp             CEEEEEEEECTTSSTTSC-TTCEEEEEEEEETTEEEEBCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEEecCCccCCCC-CCeEEEEeEEEeCCceEEeecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999 798 699999999999999999999999999999999999988877764

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=4.3e-49  Score=389.37  Aligned_cols=300  Identities=18%  Similarity=0.225  Sum_probs=240.9

Q ss_pred             CCeEEEEcCChh-HHHHHHHHHh--cCC-CCeEEEEeCCc--cchHHHHHHHHHHh--hcCCCceEEEcCCc-cccCCCC
Q 018760           37 HTKISVIGTGNV-GMAIAQTILT--QDF-VEELALVDAKA--DKLRGEMLDLQHAA--AFLPRTKILASVDY-AVTAGSD  107 (350)
Q Consensus        37 ~~KI~IIGAG~v-G~~~a~~l~~--~~~-~~ev~L~D~~~--~~l~~~~~dl~~~~--~~~~~~~v~~t~~~-~al~~aD  107 (350)
                      ++||+|||||++ |.+++..|+.  .++ .+||+|+|+++  +++++. .++.+..  .+....++.+|+|+ ++++|||
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~-~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD   85 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIV-GALAKRMVEKAGVPIEIHLTLDRRRALDGAD   85 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHH-HHHHHHHHHHTTCCCEEEEESCHHHHHTTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHH-HHHHHHHHhhcCCCcEEEEeCCHHHHhCCCC
Confidence            689999999998 7777777777  566 67999999999  998874 4555443  23346788888897 7899999


Q ss_pred             EEEEecCCCcCccccHHHH--------------------HHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHH
Q 018760          108 LCIVTAGARQIAGESRLNL--------------------LQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKL  167 (350)
Q Consensus       108 iVIi~~g~~~~~g~~r~~~--------------------~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~  167 (350)
                      +||+++|.++++|++|+++                    +.+|+++++++++.|+++||+||+|++|||+|++|++++|+
T Consensus        86 ~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~~k~  165 (450)
T 1s6y_A           86 FVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRY  165 (450)
T ss_dssp             EEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHH
T ss_pred             EEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh
Confidence            9999999999998888744                    79999999999999999999999999999999999999998


Q ss_pred             hCCCCCcEeeecCCccHHHHHHHHHHHcCCCCcceEEEEEe-----------ecCCceeeeecceeec----C-------
Q 018760          168 SGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVG-----------EHGDSSVALWSSISVG----G-------  225 (350)
Q Consensus       168 sg~~~~rviG~g~~ld~~r~~~~la~~l~v~p~~v~~~v~G-----------~hg~~~vp~~S~~~v~----g-------  225 (350)
                      +  |++||||+ |+.. .|+++.+|+.+|++|++|+++++|           +||++++|.||...++    |       
T Consensus       166 ~--p~~rViG~-c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~v~~~G~d~~p~~~~~~~~~~~~g~~~~~~~  241 (450)
T 1s6y_A          166 T--KQEKVVGL-CNVP-IGMRMGVAKLLGVDADRVHIDFAGLNHMVFGLHVYLDGVEVTEKVIDLVAHPDRSGVTMKNIV  241 (450)
T ss_dssp             C--CCCCEEEC-CSHH-HHHHHHHHHHHTSCGGGEEEEEEEETTEEEEEEEEETTEECHHHHHHHHSCC-----------
T ss_pred             C--CCCCEEEe-CCcH-HHHHHHHHHHhCCCHHHcEEEEEeeecceeEEEeeeCCcCchHhHHHHHhhhccccccccccc
Confidence            6  77799999 6654 699999999999999999999999           6677777777664432    2       


Q ss_pred             -cccc------------ccchhhhccCCHHHH-------------HHHHHHHHhhHHHHH-----HhcC-----CcchHH
Q 018760          226 -VPIL------------SFLEKQQIAYEKETL-------------ESIHKEVVDSAYEVI-----SLKG-----YTSWAI  269 (350)
Q Consensus       226 -~p~~------------~~~~~~~~~~~~~~~-------------~~i~~~v~~~~~~v~-----~~kg-----~~~~~~  269 (350)
                       .|+.            +|++.  +.++++.+             .++.+++++++++++     ..|+     .+++++
T Consensus       242 ~~~~~~~~~~~~g~~p~~y~~y--y~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ei~~~~~~~~k~~~~~~~~~~~~  319 (450)
T 1s6y_A          242 DLGWEPDFLKGLKVLPCPYHRY--YFQTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAIKPPQLEKRGGAYY  319 (450)
T ss_dssp             -CCCCHHHHHHHCSBCCGGGHH--HHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCC-----------CCSCCH
T ss_pred             cCccHHHHHHhcCCccchhhhh--hcCCHHHHHhhhccccccchHHHHHHHHHHHHHHHHhhhccccccchhhcccchHH
Confidence             2221            11110  00112322             244556777778887     4443     445567


Q ss_pred             HHHHHHHHHHHHhcCCCeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHHHHH
Q 018760          270 GYSAANLARSIIRDQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEV  344 (350)
Q Consensus       270 a~a~~~ii~ai~~~~~~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i~~~  344 (350)
                      |.+++++++||++|++.++++|++++|+| |+| +|+++|+||+||++|++++..++|+++|++++++++..=+-.
T Consensus       320 ~~~a~~ii~AI~~d~~~~~~vsv~n~G~i~~lp-~d~~vevP~vvg~~Gi~~i~~~~L~~~e~~l~~~~~~~e~l~  394 (450)
T 1s6y_A          320 SDAACSLISSIYNDKRDIQPVNTRNNGAIASIS-AESAVEVNCVITKDGPKPIAVGDLPVAVRGLVQQIKSFERVA  394 (450)
T ss_dssp             HHHHHHHHHHHHHTCCCEEEEEEECTTSBTTSC-TTSEEEEEEEEETTEEEECCCBCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCeEEEEEeecCceecCCC-CCeEEEEeEEEcCCCeEEeecCCCCHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999998 797 699999999999999999999999999999999988654433

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=100.00  E-value=7.2e-48  Score=367.56  Aligned_cols=303  Identities=22%  Similarity=0.338  Sum_probs=266.3

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHhcCCC-----CeEEEEeCCc--cchHHHHHHHHHHh-hcCCCceEEEcCC-ccccC
Q 018760           35 KRHTKISVIGT-GNVGMAIAQTILTQDFV-----EELALVDAKA--DKLRGEMLDLQHAA-AFLPRTKILASVD-YAVTA  104 (350)
Q Consensus        35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~-----~ev~L~D~~~--~~l~~~~~dl~~~~-~~~~~~~v~~t~~-~~al~  104 (350)
                      +++|||+|+|| |.+|++++..|+..+..     .+|+++|+++  +++++..+|+.+.. .+  ..++..+.+ +++++
T Consensus         2 ~~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~--~~di~~~~~~~~a~~   79 (327)
T 1y7t_A            2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPL--LAGLEATDDPKVAFK   79 (327)
T ss_dssp             CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT--EEEEEEESCHHHHTT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccc--cCCeEeccChHHHhC
Confidence            45689999998 99999999999988864     3999999975  55677777887753 12  135555455 46899


Q ss_pred             CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcchHHHHHHHHh-CCCCCcEeeecCCc
Q 018760          105 GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDILTYVAWKLS-GLPSNRVIGSGTNL  182 (350)
Q Consensus       105 ~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~~~~~~~~s-g~~~~rviG~g~~l  182 (350)
                      ++|+||.+++.+++++++|.+++..|+.+.+++++.+++++ |+++++++|||++.++++..+.+ +++|.++.|. |.+
T Consensus        80 ~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~~~~~~~~~~~p~~~yg~-tkl  158 (327)
T 1y7t_A           80 DADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAM-TRL  158 (327)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEEC-CHH
T ss_pred             CCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHHHHHHHcCCCChhheecc-chH
Confidence            99999999999988899999999999999999999999997 99999999999999999888877 7899999888 999


Q ss_pred             cHHHHHHHHHHHcCCCCcceEE-EEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHh
Q 018760          183 DSSRFRFLLADHLDVNAQDVQA-YIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL  261 (350)
Q Consensus       183 d~~r~~~~la~~l~v~p~~v~~-~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~  261 (350)
                      ++.|+.+.+++.+|+++..++. .|+|+|+++++|+|+++.++|.|+.+++..      +...+++.+++++++++|++.
T Consensus       159 ~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~~~~~~~~~~~~~g~~l~~~~~~------~~~~~~~~~~v~~~g~~ii~~  232 (327)
T 1y7t_A          159 DHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDM------EWYEKVFIPTVAQRGAAIIQA  232 (327)
T ss_dssp             HHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTSCH------HHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcChhheeeeEEEcCCCCeEEEEeeeeeeCCeeHHHhccc------hhHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999995 799999999999999999999999876532      112467888899999999999


Q ss_pred             cCCcchH-HHHHHHHHHHHHHhc--CCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeec-CCCCHHHHHHHHHH
Q 018760          262 KGYTSWA-IGYSAANLARSIIRD--QRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTN-IHLNQEESHRLRNS  337 (350)
Q Consensus       262 kg~~~~~-~a~a~~~ii~ai~~~--~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~-~~L~~~E~~~l~~s  337 (350)
                      ||.++|. +|.++++++++|++|  ++.++|++++++|+||+| +++|||+||++ ++|++++.+ ++|+++|+++|++|
T Consensus       233 kg~~~~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~g~yg~~-~~~~~~~P~~i-~~G~~~i~~~~~l~~~e~~~l~~s  310 (327)
T 1y7t_A          233 RGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIP-EGIVYSFPVTA-KDGAYRVVEGLEINEFARKRMEIT  310 (327)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHTBCCTTCCEEEEEECSSGGGCC-TTSEEEEEEEE-ETTEEEECCCCCCCHHHHHHHHHH
T ss_pred             cCCCchHHHHHHHHHHHHHHHcCCCCCeEEEEEEEecCccCCC-CCeEEEEEEEE-cCCeEEecCCCCCCHHHHHHHHHH
Confidence            9987775 678999999999999  689999999999999997 59999999999 999999877 89999999999999


Q ss_pred             HHHHHHHHHHh
Q 018760          338 AKTILEVQSQL  348 (350)
Q Consensus       338 a~~i~~~~~~~  348 (350)
                      ++.|++.++.+
T Consensus       311 ~~~l~~~~~~~  321 (327)
T 1y7t_A          311 AQELLDEMEQV  321 (327)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=3.8e-47  Score=376.99  Aligned_cols=299  Identities=16%  Similarity=0.239  Sum_probs=236.3

Q ss_pred             CCCeEEEEcCChh-HHHHHHHHHhc--CC-CCeEEEEeCCccchHHHHHHHHHHh--hcCCCceEEEcCCc-cccCCCCE
Q 018760           36 RHTKISVIGTGNV-GMAIAQTILTQ--DF-VEELALVDAKADKLRGEMLDLQHAA--AFLPRTKILASVDY-AVTAGSDL  108 (350)
Q Consensus        36 ~~~KI~IIGAG~v-G~~~a~~l~~~--~~-~~ev~L~D~~~~~l~~~~~dl~~~~--~~~~~~~v~~t~~~-~al~~aDi  108 (350)
                      +++||+|||||++ +.+++..|+..  ++ ..||+|+|++++++++. .++.+..  ......++.+++|+ ++++|||+
T Consensus        27 ~~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~-~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~  105 (472)
T 1u8x_X           27 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRI-AGACDVFIREKAPDIEFAATTDPEEAFTDVDF  105 (472)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHH-HHHHHHHHHHHCTTSEEEEESCHHHHHSSCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHH-HHHHHHHhccCCCCCEEEEECCHHHHHcCCCE
Confidence            3579999999998 55577788887  66 68999999999999874 4666543  23346789888897 78999999


Q ss_pred             EEEecCCCcCccccHHH--------------------HHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHh
Q 018760          109 CIVTAGARQIAGESRLN--------------------LLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLS  168 (350)
Q Consensus       109 VIi~~g~~~~~g~~r~~--------------------~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~s  168 (350)
                      ||+++|.+++++++|++                    ++.+|+++++++++.|+++||+||+|++|||+|++|++++|.+
T Consensus       106 VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~~  185 (472)
T 1u8x_X          106 VMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLR  185 (472)
T ss_dssp             EEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHS
T ss_pred             EEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhC
Confidence            99999999888888844                    4899999999999999999999999999999999999999986


Q ss_pred             CCCCCcEeeecCCccHHHHHHHHHHHcCCCC-cceEEEEEe-----------e-cCCceeeeecceee-cC-cc------
Q 018760          169 GLPSNRVIGSGTNLDSSRFRFLLADHLDVNA-QDVQAYIVG-----------E-HGDSSVALWSSISV-GG-VP------  227 (350)
Q Consensus       169 g~~~~rviG~g~~ld~~r~~~~la~~l~v~p-~~v~~~v~G-----------~-hg~~~vp~~S~~~v-~g-~p------  227 (350)
                        |++||||+ |+.. .|+++.+|+.+|++| ++|+++++|           + ||++++|.||...+ +| .|      
T Consensus       186 --p~~rViG~-c~~~-~r~~~~la~~lgv~~~~~v~~~v~GlNH~~W~~~~~~~hG~d~~p~~~~~~~~~g~~~~~~~~~  261 (472)
T 1u8x_X          186 --PNSKILNI-CDMP-VGIEDRMAQILGLSSRKEMKVRYYGLNHFGWWTSIQDQEGNDLMPKLKEHVSQYGYIPKTEAEA  261 (472)
T ss_dssp             --TTCCEEEC-CSHH-HHHHHHHHHHHTCSCGGGEEEEEEEETTEEEEEEEEETTCCBCHHHHHHHHHHHSSCCCC----
T ss_pred             --CCCCEEEe-CCcH-HHHHHHHHHHhCcCchhceeEEEeccchhhheeeeEeCCCCEehHhHHHHHHhcCCCccccccc
Confidence              77899999 6654 599999999999998 999999999           8 99999999998654 33 11      


Q ss_pred             ----cc-ccchhhh---------------ccC-CHHHHHHH------HHHHHh----hHHHHHH-h--cC---Ccch---
Q 018760          228 ----IL-SFLEKQQ---------------IAY-EKETLESI------HKEVVD----SAYEVIS-L--KG---YTSW---  267 (350)
Q Consensus       228 ----~~-~~~~~~~---------------~~~-~~~~~~~i------~~~v~~----~~~~v~~-~--kg---~~~~---  267 (350)
                          +. ++++...               +++ .++.+++.      .+++++    ..+++++ .  ++   .+.|   
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~e~~p~~Yl~yy~~~~~~~e~~~~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (472)
T 1u8x_X          262 VEASWNDTFAKARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITREQSSENSEIKID  341 (472)
T ss_dssp             ---CTTSHHHHHHHHHHTSTTSEECGGGHHHHSHHHHHTTSCSSSCHHHHHHHHTTTTTTTTHHHHHHHTSCCSCSSCCC
T ss_pred             cccchHHHHHhhcCccccccccCCccchhcccCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhcCCccccccccc
Confidence                11 1211100               001 12212210      112222    1122222 3  55   3444   


Q ss_pred             HHHHHHHHHHHHHHhcCCCeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHH
Q 018760          268 AIGYSAANLARSIIRDQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKT  340 (350)
Q Consensus       268 ~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~  340 (350)
                      +++.+++++++||++|++.++++|++++|+| |+| +|+++|+||+||++|++++...+|+++|+++++.-...
T Consensus       342 ~~~~~a~~ii~AI~~d~~~v~~vsv~n~G~i~glp-~d~~veVP~vvg~~Gi~pi~~~~Lp~~~~~l~~~~~~~  414 (472)
T 1u8x_X          342 DHASYIVDLARAIAYNTGERMLLIVENNGAIANFD-PTAMVEVPCIVGSNGPEPITVGTIPQFQKGLMEQQVSV  414 (472)
T ss_dssp             TTTHHHHHHHHHHHHTCCEEEEEEEECTTSBTTSC-TTSEEEEEEEEETTEEEECCCBCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEEeecCceecCcC-CCeEEEEeEEEcCCCceEeecCCCCHHHHHHHHHHHHH
Confidence            8899999999999999999999999999998 798 69999999999999999999999999999998875543

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=100.00  E-value=6.9e-40  Score=322.39  Aligned_cols=294  Identities=16%  Similarity=0.215  Sum_probs=220.8

Q ss_pred             CCCeEEEEcCChhH--HHHHHHHHhcC-CCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEE
Q 018760           36 RHTKISVIGTGNVG--MAIAQTILTQD-FVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIV  111 (350)
Q Consensus        36 ~~~KI~IIGAG~vG--~~~a~~l~~~~-~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi  111 (350)
                      +++||+|||||++|  ..++..|+... +..+|+|+|+++++++... .+.+.... ...++.+|+|+ +|++|||+||+
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~geV~L~Di~~e~le~~~-~~~~~l~~-~~~~I~~TtD~~eAl~dADfVI~   81 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNE-VIGNHSGN-GRWRYEAVSTLKKALSAADIVII   81 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCEEEEEECSSHHHHHHHH-HHHTTSTT-SCEEEEEESSHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCCeEEEEeCCHHHHHHHH-HHHHHHhc-cCCeEEEECCHHHHhcCCCEEEe
Confidence            45799999999985  56777777643 3359999999998876432 22222111 35688889998 68999999999


Q ss_pred             ecC------------CCcCccccHH----------HHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhC
Q 018760          112 TAG------------ARQIAGESRL----------NLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSG  169 (350)
Q Consensus       112 ~~g------------~~~~~g~~r~----------~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg  169 (350)
                      +++            .|+++|..|.          ....+|+++++++++.|+++||+||+|++|||+|++|++++|.  
T Consensus        82 airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~~k~--  159 (450)
T 3fef_A           82 SILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKV--  159 (450)
T ss_dssp             CCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHH--
T ss_pred             ccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHH--
Confidence            985            4778887543          4567999999999999999999999999999999999999987  


Q ss_pred             CCCCcEeeecCCccHHHHHHHHHHHc----C---CCCcceEEEEEe-ecCCceeeeecceeecCccccccchh------h
Q 018760          170 LPSNRVIGSGTNLDSSRFRFLLADHL----D---VNAQDVQAYIVG-EHGDSSVALWSSISVGGVPILSFLEK------Q  235 (350)
Q Consensus       170 ~~~~rviG~g~~ld~~r~~~~la~~l----~---v~p~~v~~~v~G-~hg~~~vp~~S~~~v~g~p~~~~~~~------~  235 (350)
                      +|+.||||+ |+.. .++++.+|+.|    |   ++|++|+..++| ||    +.||++++++|+++...+++      .
T Consensus       160 ~p~~rviG~-C~~~-~~~~~~~a~~l~~~lg~~~~~~~~v~~~~~GlNH----~~w~~~~~~~G~d~~p~l~~~~~~~~~  233 (450)
T 3fef_A          160 FPGIKAIGC-CHEV-FGTQKLLAEMVTERLGIEVPRREDIRVNVLGINH----FTWITKASYRHIDLLPIFREFSAHYGE  233 (450)
T ss_dssp             CTTCEEEEC-CSHH-HHHHHHHHHHHHHHHCCCCSCGGGEEEEEEEETT----EEEEEEEEETTEEHHHHHHHHHHHHTT
T ss_pred             CCCCCEEEe-CCcH-HHHHHHHHHHHHhhcCCCCCChhHeEEEEeeecC----eEeEEEEEECCEEChHHHHHHHHhhcc
Confidence            688899999 8875 89999999999    5   779999999999 99    99999999999887653211      0


Q ss_pred             h-------cc----CC------HHHHHHH------------------------------------HHHHH---hhHHHHH
Q 018760          236 Q-------IA----YE------KETLESI------------------------------------HKEVV---DSAYEVI  259 (350)
Q Consensus       236 ~-------~~----~~------~~~~~~i------------------------------------~~~v~---~~~~~v~  259 (350)
                      .       .|    +.      .+.++.+                                    .+.+.   ++-.+..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~ey~p~~Y~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  313 (450)
T 3fef_A          234 SGYELEGECWRDSVFCSAHRVAFDLFETYGAIPAAGDRHLAEFLPGPYLKQPEVWKFHLTPISFRKQDRAEKRQETERLI  313 (450)
T ss_dssp             TCCCCTTCCTTSCTTCCCSHHHHHHHHHHSSEECSCHHHHTTSSCSSGGGCTTTTTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccchhhHHHHHHHHHcCCcccccccchhcccchhhcCCHHHhcccccchhhHHHHHHHHHHHHHHHh
Confidence            0       00    00      0000000                                    00000   0111111


Q ss_pred             HhcCC-cchHHHHHHHHHHHHHHhcCCCeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHH
Q 018760          260 SLKGY-TSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNS  337 (350)
Q Consensus       260 ~~kg~-~~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~s  337 (350)
                      ..... ..-..+.+++++++||++|++.++++|++++|+| |+| +|+++|+||+++++|++++...+|++.++.+++.-
T Consensus       314 ~~~~~~~~~~~~e~~~~ii~aI~~d~~~~~~vnv~n~G~i~~lp-~d~~vevP~~v~~~Gi~pi~~g~Lp~~~~~l~~~~  392 (450)
T 3fef_A          314 VQQRGVAEKASGEEGVNIIAALLGLGELVTNVNMPNQGQVLNLP-IQAIVETNAFITRNRVQPILSGALPKGVEMLAARH  392 (450)
T ss_dssp             HTTCCCCCSCCSCCHHHHHHHHTTSCCEEEEEEEECSSSSTTSC-TTSEEEEEEEEETTEEEEBCCCCCCHHHHHHHHHH
T ss_pred             cCCcCcCcCccHHHHHHHHHHHHcCCCeEEEEEeecCcEecCCC-CCeEEEEEEEEcCCCceecccCCCCHHHHHHHHHH
Confidence            11000 0000124579999999999999999999999997 898 69999999999999999999999999999988765


Q ss_pred             HHH
Q 018760          338 AKT  340 (350)
Q Consensus       338 a~~  340 (350)
                      ...
T Consensus       393 ~~~  395 (450)
T 3fef_A          393 ISN  395 (450)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=100.00  E-value=5.4e-38  Score=312.36  Aligned_cols=284  Identities=19%  Similarity=0.205  Sum_probs=211.7

Q ss_pred             CeEEEEcCChhHHHH--HHHHHhcC----CCCeEEEEeCCccchHHHHHHHHHHhhc-CCCceEEEcCCc-cccCCCCEE
Q 018760           38 TKISVIGTGNVGMAI--AQTILTQD----FVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILASVDY-AVTAGSDLC  109 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~--a~~l~~~~----~~~ev~L~D~~~~~l~~~~~dl~~~~~~-~~~~~v~~t~~~-~al~~aDiV  109 (350)
                      |||+|||||++|++.  ...|+...    ...+|+|+|++++++++...++++.... ....++..|+|+ +|++|||||
T Consensus         1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~gAD~V   80 (477)
T 3u95_A            1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEGADFI   80 (477)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTTCSEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCCCCEE
Confidence            799999999998774  34466543    2369999999999999888888876542 356789999997 689999999


Q ss_pred             EEecCC-------------------CcCccccHHHHH---------------HhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          110 IVTAGA-------------------RQIAGESRLNLL---------------QRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       110 Ii~~g~-------------------~~~~g~~r~~~~---------------~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      |+++|.                   |+|+|++|.++.               .+|++++.+++++|+++|||||+||+||
T Consensus        81 i~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~P~A~~in~tN  160 (477)
T 3u95_A           81 INTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMAPKAYLMQTAN  160 (477)
T ss_dssp             EECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             EECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhhCCCeEEEEecC
Confidence            999864                   346666554432               3589999999999999999999999999


Q ss_pred             CcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHHHcCCCCcceEEEEEe-ecCCceeeeecceeecCccccccchh
Q 018760          156 PVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVG-EHGDSSVALWSSISVGGVPILSFLEK  234 (350)
Q Consensus       156 P~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~v~p~~v~~~v~G-~hg~~~vp~~S~~~v~g~p~~~~~~~  234 (350)
                      |++++|++++|+++.   |+||+ |+..  +....+++.||+++++|+..+.| ||    +.||...+.+|.++...+.+
T Consensus       161 P~~i~t~a~~~~~~~---k~vGl-C~~~--~~~~~~~~~Lg~~~~~v~~~~~GlNH----~~w~~~~~~~G~D~~P~l~~  230 (477)
T 3u95_A          161 PVFEITQAVRRWTGA---NIIGF-CHGV--AGVYEVFERLGLDPEEVDWQVAGVNH----GIWLNRFRYRGKDAYPLLDE  230 (477)
T ss_dssp             CHHHHHHHHHHHHCC---CEEEE-CCGG--GHHHHHHHHTTCCGGGEEEEEEEETT----EEEEEEEEETTEECHHHHHH
T ss_pred             hHHHHHHHHHHhCCC---CeEEE-CCCH--HHHHHHHHHhCCCHHHcEEEEeecCC----CeeeeeeeecCCcccHHHHH
Confidence            999999999999885   89999 9864  34456788899999999999999 99    88888888888764321110


Q ss_pred             -------------------------------------------hhccCCHHHHHH----------------HHHHHHhhH
Q 018760          235 -------------------------------------------QQIAYEKETLES----------------IHKEVVDSA  255 (350)
Q Consensus       235 -------------------------------------------~~~~~~~~~~~~----------------i~~~v~~~~  255 (350)
                                                                 ..+++..+....                +.+..+...
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~d~~r~~g~~p~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  310 (477)
T 3u95_A          231 WIEKELSKWEPKNPWDTQMSPAAMDMYRFYGMLPIGDTVRNGTWKYHYNLETKKKWFRRFGGIDNEVERPKFHEHLRRAR  310 (477)
T ss_dssp             HHHHHTTTCCCSSTTCCTTSHHHHHHHHHHSSCEEGGGGTSCCGGGTSSHHHHHHHHCTTCCSSSTTHHHHHHHHHHHHH
T ss_pred             HHHhhcccccccCccccccchHHHHHHHHhCCcccccccccccchhhhhHHHHHHHHHHhcccchhhhhhhHHHHHHHHH
Confidence                                                       001222111111                111111111


Q ss_pred             -------HHHHHh-------------cCCcchHHHHHHHHHHHHHHhcCCCeEEEEEEecccc-CCCCCCeEEEEeEEEc
Q 018760          256 -------YEVISL-------------KGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLG  314 (350)
Q Consensus       256 -------~~v~~~-------------kg~~~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig  314 (350)
                             .++.+.             ++...|+  ..++++++||++|++.++.+||.|+|.. ++| +|+++++||+|+
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--e~a~~ii~AI~~~~~~~~~vNv~N~G~I~nLP-~DavVEVpc~Vd  387 (477)
T 3u95_A          311 ERLIKLAEEVQENPHLKITEKHPEIFPKGRLSG--EQHIPFINAIANNKRVRLFLNVENQGALKDFP-DDLVMELPVWVD  387 (477)
T ss_dssp             HHHHHHHHHHHHCTTCCHHHHCTTTSCSSCCCC--CSHHHHHHHHHHCCCEEEEEEEECTTSSTTSC-TTSEEEEEEEEE
T ss_pred             HHHHHHHHHHhhccchhcccccchhcccccccH--HHHHHHHHHHhCCCCeEEEEEeecCcccCCCC-CCcEEEEEEEEc
Confidence                   111111             0111122  5678999999999999999999999996 898 699999999999


Q ss_pred             CCceEEeecCCCCHHHHHHH
Q 018760          315 RGGVLGVTNIHLNQEESHRL  334 (350)
Q Consensus       315 ~~Gv~~v~~~~L~~~E~~~l  334 (350)
                      ++|+.++.-.++++....++
T Consensus       388 ~~Gi~P~~vg~~p~~~~~l~  407 (477)
T 3u95_A          388 SSGIHREKVEPDLTHRIKIF  407 (477)
T ss_dssp             TTEEEECCCCSCCCHHHHHH
T ss_pred             CCCcccccCCCCCHHHHHHH
Confidence            99999987778877665553

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=1.5e-37  Score=308.10  Aligned_cols=291  Identities=19%  Similarity=0.198  Sum_probs=214.4

Q ss_pred             CCeEEEEcCChhHHHH--HHHHHh-cCC-CCeEEEEeCCccchHHHHHHHHHHhh-cCCCceEEEcCCc-cccCCCCEEE
Q 018760           37 HTKISVIGTGNVGMAI--AQTILT-QDF-VEELALVDAKADKLRGEMLDLQHAAA-FLPRTKILASVDY-AVTAGSDLCI  110 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~--a~~l~~-~~~-~~ev~L~D~~~~~l~~~~~dl~~~~~-~~~~~~v~~t~~~-~al~~aDiVI  110 (350)
                      ++||+|||||+||.+.  +..|+. .++ ..+|+|+|++++++++.......... .....++.+|+|+ ++++|||+||
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI   82 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   82 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence            5799999999986554  667774 344 57999999999999874433332221 2235688888897 7899999999


Q ss_pred             EecCC------------CcCccccH--HH------------HHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHH
Q 018760          111 VTAGA------------RQIAGESR--LN------------LLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVA  164 (350)
Q Consensus       111 i~~g~------------~~~~g~~r--~~------------~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~  164 (350)
                      +++|.            |.++|..|  .+            ++.+|+++++++++.|+++||+||+|++|||++++|+++
T Consensus        83 iaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~~~  162 (480)
T 1obb_A           83 NTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLV  162 (480)
T ss_dssp             ECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHHH
T ss_pred             ECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence            99986            34455443  33            478999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCcEeeecCCccHHHHHHHHHHHcCCCCcceEEEEEe-ecCCceeeeecceeecCccccccchh---------
Q 018760          165 WKLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVG-EHGDSSVALWSSISVGGVPILSFLEK---------  234 (350)
Q Consensus       165 ~~~sg~~~~rviG~g~~ld~~r~~~~la~~l~v~p~~v~~~v~G-~hg~~~vp~~S~~~v~g~p~~~~~~~---------  234 (350)
                      +|   +|++||||+++.++  ++++.+ +.+|++|++|+++|+| ||    +.||.+.+++|.++...+.+         
T Consensus       163 ~k---~p~~rviG~c~~~~--~~~~~l-~~lgv~~~~v~~~v~GlNH----~~w~~~~~~~G~D~~p~l~~~~~~~~~~~  232 (480)
T 1obb_A          163 TR---TVPIKAVGFCHGHY--GVMEIV-EKLGLEEEKVDWQVAGVNH----GIWLNRFRYNGGNAYPLLDKWIEEKSKDW  232 (480)
T ss_dssp             HH---HSCSEEEEECSGGG--HHHHHH-HHTTCCGGGEEEEEEEETT----EEEEEEEEETTEECHHHHHHHHHHTGGGC
T ss_pred             HH---CCCCcEEecCCCHH--HHHHHH-HHhCCCHHHceEEEEeecc----hhhhhheeeCCeEcHHHHHHHHHccCccc
Confidence            88   57889999955554  478999 9999999999999999 99    99998888877654321100         


Q ss_pred             ----------------------------------h-------h--ccC------CHH-----H----HHHHHHHHHhhHH
Q 018760          235 ----------------------------------Q-------Q--IAY------EKE-----T----LESIHKEVVDSAY  256 (350)
Q Consensus       235 ----------------------------------~-------~--~~~------~~~-----~----~~~i~~~v~~~~~  256 (350)
                                                        .       .  |||      ..+     .    ..+......+.-+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~~y~~~~~~~~~~yyy~~~~~~~~~~~~~~~~~~~~~e~~~~~e~~~~  312 (480)
T 1obb_A          233 KPENPFNDQLSPAAIDMYRFYGVMPIGDTVRNSSWRYHRDLETKKKWYGEPWGGADSEIGWKWYQDTLGKVTEITKKVAK  312 (480)
T ss_dssp             CCSSTTCCTTSHHHHHHHHHHSSCEEGGGTTSCCGGGGSSHHHHHHHHCTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhHHHHHHHhcCCeecCCCCCCcCcccccccCccccccchhhcccccccccHhHHHHHHHHHHHHHHHHH
Confidence                                              0       0  111      000     0    1111111111222


Q ss_pred             HHHHhc---C--------CcchH----------------HHHHHHHHHHHHHhcCCCeEEEEEEeccc-cCCCCCCeEEE
Q 018760          257 EVISLK---G--------YTSWA----------------IGYSAANLARSIIRDQRKIHPVSVLAKGF-YGIDGGDVFLS  308 (350)
Q Consensus       257 ~v~~~k---g--------~~~~~----------------~a~a~~~ii~ai~~~~~~v~~v~v~~~g~-~gi~~~~~~~s  308 (350)
                      ++.+..   .        .++|+                .+..++.+++||++|.+.++.++|.|+|. .++| +|++++
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ge~a~~ii~ai~~~~~~~~~vnv~N~G~I~~lp-~d~vVE  391 (480)
T 1obb_A          313 FIKENPSVRLSDLGSVLGKDLSEKQFVLEVEKILDPERKSGEQHIPFIDALLNDNKARFVVNIPNKGIIHGID-DDVVVE  391 (480)
T ss_dssp             HHHHCTTCCGGGCSSSSCCSHHHHHHHHHHHHHHCTTCCCSCSHHHHHHHHHHCCCEEEEEEEECTTSSTTSC-TTSEEE
T ss_pred             HHhcCCccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHhCCCeEEEEEeeCCceeCCCC-CCeEEE
Confidence            232221   1        11111                12457999999999999999999999998 5998 699999


Q ss_pred             EeEEEcCCceEEeecCC-CCHHHHHH-HHHHH
Q 018760          309 LPAQLGRGGVLGVTNIH-LNQEESHR-LRNSA  338 (350)
Q Consensus       309 ~Pv~ig~~Gv~~v~~~~-L~~~E~~~-l~~sa  338 (350)
                      +||+++++|++++.-.+ |++..+.+ ++.-.
T Consensus       392 vp~~v~~~G~~p~~~g~~lP~~~~~l~~~~~~  423 (480)
T 1obb_A          392 VPALVDKNGIHPEKIEPPLPDRVVKYYLRPRI  423 (480)
T ss_dssp             EEEEEETTEEEECCCSSCCCHHHHHHTHHHHH
T ss_pred             EEEEEcCCCCEeeccCCCCCHHHHhHHHHHHH
Confidence            99999999999999888 99998888 65544

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=99.22  E-value=3.7e-11  Score=113.16  Aligned_cols=145  Identities=14%  Similarity=0.187  Sum_probs=102.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh-------cCC-------CceEEEcCCc-c
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA-------FLP-------RTKILASVDY-A  101 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~-------~~~-------~~~v~~t~~~-~  101 (350)
                      ..||+|||||.||+.+|..++..|+  +|+|+|++++.++.....+.....       ...       ..++..++|+ +
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~   83 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGF--RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAE   83 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHh
Confidence            3599999999999999999999997  999999999877654333332211       000       1346777887 5


Q ss_pred             ccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee---
Q 018760          102 VTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS---  178 (350)
Q Consensus       102 al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~---  178 (350)
                      ++++||+||.++              .+|.++.+++.++|.+++++. .|++||.+.+....+...+. .|+|++|+   
T Consensus        84 a~~~ad~ViEav--------------~E~l~iK~~lf~~l~~~~~~~-aIlaSNTSsl~is~ia~~~~-~p~r~ig~Hff  147 (319)
T 3ado_A           84 AVEGVVHIQECV--------------PENLDLKRKIFAQLDSIVDDR-VVLSSSSSCLLPSKLFTGLA-HVKQCIVAHPV  147 (319)
T ss_dssp             HTTTEEEEEECC--------------CSCHHHHHHHHHHHHTTCCSS-SEEEECCSSCCHHHHHTTCT-TGGGEEEEEEC
T ss_pred             HhccCcEEeecc--------------ccHHHHHHHHHHHHHHHhhhc-ceeehhhhhccchhhhhhcc-CCCcEEEecCC
Confidence            799999999995              258899999999999997554 35799999985444433333 35777743   


Q ss_pred             ---------------cCCccHHHHHHHHHHHcCCCC
Q 018760          179 ---------------GTNLDSSRFRFLLADHLDVNA  199 (350)
Q Consensus       179 ---------------g~~ld~~r~~~~la~~l~v~p  199 (350)
                                     .|..++...-..+++.+|..|
T Consensus       148 NP~~~m~LVEiv~g~~Ts~~~~~~~~~~~~~~gk~p  183 (319)
T 3ado_A          148 NPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSP  183 (319)
T ss_dssp             SSTTTCCEEEEEECTTCCHHHHHHHHHHHHHTTCEE
T ss_pred             CCccccchHHhcCCCCCcHHHHHHHHHHHHHhCCcc
Confidence                           344445445556667776544

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=99.04  E-value=1.3e-09  Score=113.29  Aligned_cols=145  Identities=14%  Similarity=0.155  Sum_probs=104.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh----h-------cCCCceEEEcCCccccCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA----A-------FLPRTKILASVDYAVTAG  105 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~----~-------~~~~~~v~~t~~~~al~~  105 (350)
                      -.||+|||||.||+.+|..++..|+  +|+|+|++++.++.....+....    .       .....++..+++++++++
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~aG~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  393 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELST  393 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGGGS
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCC--chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHHhh
Confidence            4699999999999999999999997  99999999987654332222111    0       012345777788899999


Q ss_pred             CCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee-------
Q 018760          106 SDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS-------  178 (350)
Q Consensus       106 aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~-------  178 (350)
                      ||+||.++              .+|.++.+++.+++++++++. .|++||.+.+....+.+.+. .|+|++|+       
T Consensus       394 aDlVIEAV--------------~E~l~iK~~vf~~le~~~~~~-aIlASNTSsl~i~~ia~~~~-~p~r~ig~HFfnP~~  457 (742)
T 3zwc_A          394 VDLVVEAV--------------FEDMNLKKKVFAELSALCKPG-AFLCTNTSALNVDDIASSTD-RPQLVIGTHFFSPAH  457 (742)
T ss_dssp             CSEEEECC--------------CSCHHHHHHHHHHHHHHSCTT-CEEEECCSSSCHHHHHTTSS-CGGGEEEEECCSSTT
T ss_pred             CCEEEEec--------------cccHHHHHHHHHHHhhcCCCC-ceEEecCCcCChHHHHhhcC-CccccccccccCCCC
Confidence            99999995              258899999999999997544 35799999984433433333 35777753       


Q ss_pred             -----------cCCccHHHHHHHHHHHcCCCC
Q 018760          179 -----------GTNLDSSRFRFLLADHLDVNA  199 (350)
Q Consensus       179 -----------g~~ld~~r~~~~la~~l~v~p  199 (350)
                                 .|..++...-..+++.+|..|
T Consensus       458 ~m~LVEvi~g~~Ts~e~~~~~~~~~~~lgK~p  489 (742)
T 3zwc_A          458 VMRLLEVIPSRYSSPTTIATVMSLSKKIGKIG  489 (742)
T ss_dssp             TCCEEEEEECSSCCHHHHHHHHHHHHHTTCEE
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHHhCCCC
Confidence                       355555555566778887655

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.01  E-value=2.2e-09  Score=105.82  Aligned_cols=105  Identities=19%  Similarity=0.299  Sum_probs=74.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHH-HHHHHhhcC---------CCceEEEcCCccccCCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEML-DLQHAAAFL---------PRTKILASVDYAVTAGS  106 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~-dl~~~~~~~---------~~~~v~~t~~~~al~~a  106 (350)
                      .+||+|||+|.||..+|..|+..|+  +|+++|+++++...... .+.......         ...++..+++++++++|
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~aG~--~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~al~~a  131 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGLAGI--ETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFHKLSNC  131 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGGGCTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC--eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHHHHccC
Confidence            4799999999999999999999996  99999999984332211 111111000         01246667788899999


Q ss_pred             CEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcch
Q 018760          107 DLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDI  159 (350)
Q Consensus       107 DiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~  159 (350)
                      |+||+++.              ++..+.+++.+++.+++ |+++  ++||.+.+
T Consensus       132 DlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~aI--lasnTSsl  169 (460)
T 3k6j_A          132 DLIVESVI--------------EDMKLKKELFANLENICKSTCI--FGTNTSSL  169 (460)
T ss_dssp             SEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCE--EEECCSSS
T ss_pred             CEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCCE--EEecCCCh
Confidence            99999963              24567777778888876 5554  35776665

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.95  E-value=1.8e-09  Score=107.39  Aligned_cols=106  Identities=23%  Similarity=0.359  Sum_probs=76.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC---C----------CceEEEcCCcccc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL---P----------RTKILASVDYAVT  103 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~---~----------~~~v~~t~~~~al  103 (350)
                      .+||+|||+|.||..+|..|+..|+  +|+++|+++++++.....+.......   .          ..++..+++++++
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   82 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGH--QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHAL   82 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHHh
Confidence            4699999999999999999999996  89999999998876544443322100   0          1246667788889


Q ss_pred             CCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcchH
Q 018760          104 AGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDIL  160 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~  160 (350)
                      ++||+||+++.              .+..+.+++..++.+++ |+++  ++||.+.+-
T Consensus        83 ~~aDlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~~I--lasntSti~  124 (483)
T 3mog_A           83 AAADLVIEAAS--------------ERLEVKKALFAQLAEVCPPQTL--LTTNTSSIS  124 (483)
T ss_dssp             GGCSEEEECCC--------------CCHHHHHHHHHHHHHHSCTTCE--EEECCSSSC
T ss_pred             cCCCEEEEcCC--------------CcHHHHHHHHHHHHHhhccCcE--EEecCCCCC
Confidence            99999999963              24556667777777775 5553  456666653

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.95  E-value=1.8e-09  Score=100.90  Aligned_cols=109  Identities=25%  Similarity=0.316  Sum_probs=72.7

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHH----hhc--CC------------CceE
Q 018760           33 PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHA----AAF--LP------------RTKI   94 (350)
Q Consensus        33 ~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~----~~~--~~------------~~~v   94 (350)
                      |..+++||+|||+|.||.++|..|+..|.  +|+++|+++++++.....+.+.    ...  ..            ..++
T Consensus        11 ~~~~~~~I~VIG~G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i   88 (302)
T 1f0y_A           11 KKIIVKHVTVIGGGLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTI   88 (302)
T ss_dssp             -CCCCCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTE
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhce
Confidence            44445789999999999999999999986  9999999998876533222211    000  00            1146


Q ss_pred             EEcCCcc-ccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcch
Q 018760           95 LASVDYA-VTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDI  159 (350)
Q Consensus        95 ~~t~~~~-al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~  159 (350)
                      ..+++++ ++++||+||+++.              .+..+.+++.+.+.++. |++++  +||...+
T Consensus        89 ~~~~~~~~~~~~aD~Vi~avp--------------~~~~~~~~v~~~l~~~~~~~~iv--~s~ts~i  139 (302)
T 1f0y_A           89 ATSTDAASVVHSTDLVVEAIV--------------ENLKVKNELFKRLDKFAAEHTIF--ASNTSSL  139 (302)
T ss_dssp             EEESCHHHHTTSCSEEEECCC--------------SCHHHHHHHHHHHTTTSCTTCEE--EECCSSS
T ss_pred             EEecCHHHhhcCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeEE--EECCCCC
Confidence            6667775 8999999999963              13344556666677664 56644  4555544

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=98.92  E-value=2.5e-09  Score=99.04  Aligned_cols=105  Identities=25%  Similarity=0.322  Sum_probs=72.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh-c---C----------CCceEEEcCCc-c
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA-F---L----------PRTKILASVDY-A  101 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~-~---~----------~~~~v~~t~~~-~  101 (350)
                      .+||+|||+|.||..+|..|+..|.  +|+++|+++++++.....+.+... +   .          ...++..++++ +
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~   81 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGF--AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQ   81 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHH
Confidence            4699999999999999999999996  999999999887755444322110 0   0          00134556677 4


Q ss_pred             ccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcch
Q 018760          102 VTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDI  159 (350)
Q Consensus       102 al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~  159 (350)
                      ++++||+||+++.              .+..+.+++.+.+.+++ |++++  +||...+
T Consensus        82 ~~~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~il--~s~tS~~  124 (283)
T 4e12_A           82 AVKDADLVIEAVP--------------ESLDLKRDIYTKLGELAPAKTIF--ATNSSTL  124 (283)
T ss_dssp             HTTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSS
T ss_pred             HhccCCEEEEecc--------------CcHHHHHHHHHHHHhhCCCCcEE--EECCCCC
Confidence            6899999999963              13455566666677664 56654  4454444

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.83  E-value=1.1e-08  Score=106.50  Aligned_cols=107  Identities=22%  Similarity=0.366  Sum_probs=76.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh------c-------CCCceEEEcCCccc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA------F-------LPRTKILASVDYAV  102 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~------~-------~~~~~v~~t~~~~a  102 (350)
                      +.+||+|||+|.||..+|..|+..|+  +|+++|+++++++.....+.+...      .       ....++..++++++
T Consensus       311 ~~~kV~VIGaG~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~  388 (725)
T 2wtb_A          311 KIKKVAIIGGGLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYES  388 (725)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHTTTC--CEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSGG
T ss_pred             cCcEEEEEcCCHhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHHH
Confidence            35689999999999999999999996  899999999877643332222210      0       01235677778888


Q ss_pred             cCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch
Q 018760          103 TAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI  159 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~  159 (350)
                      +++||+||+++.              ++..+.+++...+.++++... |++||.+.+
T Consensus       389 ~~~aDlVIeaVp--------------e~~~vk~~v~~~l~~~~~~~~-IlasntStl  430 (725)
T 2wtb_A          389 FRDVDMVIEAVI--------------ENISLKQQIFADLEKYCPQHC-ILASNTSTI  430 (725)
T ss_dssp             GTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTC-EEEECCSSS
T ss_pred             HCCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCc-EEEeCCCCC
Confidence            999999999963              245666777777777764432 347887766

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.82  E-value=8.2e-09  Score=96.14  Aligned_cols=99  Identities=21%  Similarity=0.270  Sum_probs=71.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~  116 (350)
                      .+||+|||+|.||..+|..|+ .|+  +|+++|+++++++.....+.+.    ...++..+++++++++||+||.++.  
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~--~V~v~d~~~~~~~~~~~~l~~~----~~~~i~~~~~~~~~~~aDlVieavp--   82 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKH--EVVLQDVSEKALEAAREQIPEE----LLSKIEFTTTLEKVKDCDIVMEAVF--   82 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTS--EEEEECSCHHHHHHHHHHSCGG----GGGGEEEESSCTTGGGCSEEEECCC--
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCC--EEEEEECCHHHHHHHHHHHHHH----HhCCeEEeCCHHHHcCCCEEEEcCc--
Confidence            469999999999999999999 886  9999999998776433321111    0124656677777999999999963  


Q ss_pred             cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch
Q 018760          117 QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI  159 (350)
Q Consensus       117 ~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~  159 (350)
                                  ++..+.+.+..++... |++++  +||.+.+
T Consensus        83 ------------e~~~vk~~l~~~l~~~-~~~Il--asntSti  110 (293)
T 1zej_A           83 ------------EDLNTKVEVLREVERL-TNAPL--CSNTSVI  110 (293)
T ss_dssp             ------------SCHHHHHHHHHHHHTT-CCSCE--EECCSSS
T ss_pred             ------------CCHHHHHHHHHHHhcC-CCCEE--EEECCCc
Confidence                        2445556666667777 88754  4665554

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.80  E-value=2e-08  Score=99.41  Aligned_cols=124  Identities=18%  Similarity=0.220  Sum_probs=80.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh------h-c---C-CCceEEEcCCccccC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA------A-F---L-PRTKILASVDYAVTA  104 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~------~-~---~-~~~~v~~t~~~~al~  104 (350)
                      +.+||+|||+|.||..+|..|+..|+  +|+++|+++++++.....+....      . .   . .......++++++++
T Consensus        36 ~~~kV~VIGaG~MG~~iA~~la~~G~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~  113 (463)
T 1zcj_A           36 PVSSVGVLGLGTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELS  113 (463)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCGGGGT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCHHHHC
Confidence            35689999999999999999999996  99999999987765433222110      0 0   0 011123366788899


Q ss_pred             CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          105 GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       105 ~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                      +||+||+++.              .+..+.+++.+.+.+++ |++++  +||.+.+....+...... +.+++|+
T Consensus       114 ~aDlVIeaVp--------------e~~~~k~~v~~~l~~~~~~~~ii--~snTs~~~~~~la~~~~~-~~~~ig~  171 (463)
T 1zcj_A          114 TVDLVVEAVF--------------EDMNLKKKVFAELSALCKPGAFL--CTNTSALNVDDIASSTDR-PQLVIGT  171 (463)
T ss_dssp             TCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSSCHHHHHTTSSC-GGGEEEE
T ss_pred             CCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeEE--EeCCCCcCHHHHHHHhcC-CcceEEe
Confidence            9999999973              24455666667777765 55544  457777643343333221 3455543

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.78  E-value=1.1e-08  Score=101.66  Aligned_cols=124  Identities=16%  Similarity=0.181  Sum_probs=79.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHH--------HHHHHhhcCCCceEEEcCCc-cccCCCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEML--------DLQHAAAFLPRTKILASVDY-AVTAGSD  107 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~--------dl~~~~~~~~~~~v~~t~~~-~al~~aD  107 (350)
                      +|||+|||+|.||.++|..|+..+...+|+++|+++++++....        .+.+........++..++++ +++++||
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aD   88 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEAD   88 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCC
Confidence            57999999999999999999998433499999999988764321        11111000001236667786 6789999


Q ss_pred             EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEE-cCCcchHH
Q 018760          108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIV-ANPVDILT  161 (350)
Q Consensus       108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~-tNP~~~~~  161 (350)
                      +||++++.|.+.+.++.+ -..+...+.+.++.|.++ .|+.+||.. |+|++..-
T Consensus        89 vvii~Vptp~~~~g~~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~  143 (481)
T 2o3j_A           89 LIFISVNTPTKMYGRGKG-MAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAE  143 (481)
T ss_dssp             EEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHH
T ss_pred             EEEEecCCcccccccccc-CCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHH
Confidence            999999887654322111 011234455566666665 455655554 68877643

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=98.78  E-value=3.7e-08  Score=96.50  Aligned_cols=120  Identities=14%  Similarity=0.150  Sum_probs=82.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHH--------HHHHHhh-cCCCceEEEcCCc-cccCC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEML--------DLQHAAA-FLPRTKILASVDY-AVTAG  105 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~--------dl~~~~~-~~~~~~v~~t~~~-~al~~  105 (350)
                      ++.+|+|||+|.||.++|..|+..|.  +|+.+|+|+++++.+..        .+.+... .....++.+|++. +++++
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~--~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~   97 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGH--RVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAA   97 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTC--EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHT
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCC--cEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhc
Confidence            45699999999999999999999986  99999999988775321        0111100 0013467778887 57999


Q ss_pred             CCEEEEecCCCcCccc-cHHHHHHhhHHHHHHHHhhhhccCCCeEEEEE-cCCcchH
Q 018760          106 SDLCIVTAGARQIAGE-SRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV-ANPVDIL  160 (350)
Q Consensus       106 aDiVIi~~g~~~~~g~-~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~-tNP~~~~  160 (350)
                      ||++|+++++|.++.. ..+..+   ....+.+++.++..++..+||+- |-|++..
T Consensus        98 ad~~~I~VpTP~~~d~~~Dl~~v---~~a~~~I~~~l~~~~~g~lVV~eSTVppGtt  151 (444)
T 3vtf_A           98 TDATFIAVGTPPAPDGSADLRYV---EAAARAVGRGIRAKGRWHLVVVKSTVPPGTT  151 (444)
T ss_dssp             SSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHHHHCSCCEEEECSCCCTTTT
T ss_pred             CCceEEEecCCCCCCCCCCcHHH---HHHHHHHHHHHhhcCCCeEEEEeCCCCCchH
Confidence            9999999999876532 222222   24456666666655555666665 4677664

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.77  E-value=1.9e-08  Score=98.36  Aligned_cols=123  Identities=20%  Similarity=0.248  Sum_probs=78.9

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHH--------HHHHHhhcCCCceEEEcCCc-cccCC
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEML--------DLQHAAAFLPRTKILASVDY-AVTAG  105 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~--------dl~~~~~~~~~~~v~~t~~~-~al~~  105 (350)
                      .+.|||+|||+|.||.++|..|++ +.  +|+++|+++++++....        .+.+.... ...++..++|. +++++
T Consensus        34 ~~~mkIaVIGlG~mG~~lA~~La~-G~--~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~-~~~~l~~ttd~~ea~~~  109 (432)
T 3pid_A           34 SEFMKITISGTGYVGLSNGVLIAQ-NH--EVVALDIVQAKVDMLNQKISPIVDKEIQEYLAE-KPLNFRATTDKHDAYRN  109 (432)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHT-TS--EEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH-SCCCEEEESCHHHHHTT
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHc-CC--eEEEEecCHHHhhHHhccCCccccccHHHHHhh-ccCCeEEEcCHHHHHhC
Confidence            346899999999999999999887 74  99999999988775332        11111100 02357778886 68999


Q ss_pred             CCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEE-cCCcchHHHHHHH
Q 018760          106 SDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV-ANPVDILTYVAWK  166 (350)
Q Consensus       106 aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~-tNP~~~~~~~~~~  166 (350)
                      ||+||++++.+..+....     -+...+++.++.+.+..|++++|+. |.|.+..-.+..+
T Consensus       110 aDvViiaVPt~~~~~~~~-----~Dl~~V~~v~~~i~~l~~g~iVV~~STv~pgtt~~l~~~  166 (432)
T 3pid_A          110 ADYVIIATPTDYDPKTNY-----FNTSTVEAVIRDVTEINPNAVMIIKSTIPVGFTRDIKER  166 (432)
T ss_dssp             CSEEEECCCCEEETTTTE-----EECHHHHHHHHHHHHHCTTSEEEECSCCCTTHHHHHHHH
T ss_pred             CCEEEEeCCCcccccccc-----ccHHHHHHHHHHHHhcCCCcEEEEeCCCChHHHHHHHHH
Confidence            999999987654321100     0223333444444445677777766 4677765555433

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.76  E-value=5.2e-08  Score=86.79  Aligned_cols=98  Identities=15%  Similarity=0.220  Sum_probs=70.8

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEE-EeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEE
Q 018760           33 PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELAL-VDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIV  111 (350)
Q Consensus        33 ~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L-~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi  111 (350)
                      +..++|||+|||+|.||.+++..|+..+.  +|++ +|+++++++....++.        .... +++.++++++|+||+
T Consensus        19 ~~m~mmkI~IIG~G~mG~~la~~l~~~g~--~V~~v~~r~~~~~~~l~~~~g--------~~~~-~~~~~~~~~aDvVil   87 (220)
T 4huj_A           19 YFQSMTTYAIIGAGAIGSALAERFTAAQI--PAIIANSRGPASLSSVTDRFG--------ASVK-AVELKDALQADVVIL   87 (220)
T ss_dssp             TGGGSCCEEEEECHHHHHHHHHHHHHTTC--CEEEECTTCGGGGHHHHHHHT--------TTEE-ECCHHHHTTSSEEEE
T ss_pred             hhhcCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEECCCHHHHHHHHHHhC--------CCcc-cChHHHHhcCCEEEE
Confidence            34456899999999999999999999885  8888 9999998875332221        1222 234577899999999


Q ss_pred             ecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc
Q 018760          112 TAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD  158 (350)
Q Consensus       112 ~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~  158 (350)
                      ++.    +            ..+.++++.+.. .++.++|.++||.+
T Consensus        88 avp----~------------~~~~~v~~~l~~-~~~~ivi~~~~g~~  117 (220)
T 4huj_A           88 AVP----Y------------DSIADIVTQVSD-WGGQIVVDASNAID  117 (220)
T ss_dssp             ESC----G------------GGHHHHHTTCSC-CTTCEEEECCCCBC
T ss_pred             eCC----h------------HHHHHHHHHhhc-cCCCEEEEcCCCCC
Confidence            963    1            223445555655 45678889999985

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.76  E-value=2.4e-08  Score=99.04  Aligned_cols=119  Identities=15%  Similarity=0.166  Sum_probs=78.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhc-CCCCeEEEEeCCccchHHHHHHHHHHhh-c---C-----------CCceEEEcCC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQ-DFVEELALVDAKADKLRGEMLDLQHAAA-F---L-----------PRTKILASVD   99 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~-~~~~ev~L~D~~~~~l~~~~~dl~~~~~-~---~-----------~~~~v~~t~~   99 (350)
                      +.|||+|||+|.||.++|..|+.. |.. +|+++|+++++..+.+..++.... .   .           ...++.+|++
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~-~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd   95 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPCFE-KVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD   95 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTTCC-EEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCC-eEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc
Confidence            457999999999999999999999 742 899999999922222223332110 0   0           0245777888


Q ss_pred             ccccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEc-CCcch
Q 018760          100 YAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVA-NPVDI  159 (350)
Q Consensus       100 ~~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~t-NP~~~  159 (350)
                      .+++++||+||++++.|..+..++    ..+...++..++.|.++ .|+.++|+.| -|.+.
T Consensus        96 ~ea~~~aDvViiaVptp~~~~~~~----~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgt  153 (478)
T 3g79_A           96 FSRISELDAVTLAIQTPFANPKDL----EPDFSALIDGIRNVGKYLKPGMLVVLESTITPGT  153 (478)
T ss_dssp             GGGGGGCSEEEECCCCCCCSSCCS----SCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTT
T ss_pred             HHHHhcCCEEEEecCCchhccCCc----cccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHH
Confidence            888999999999998886543210    01334445555556554 4566666654 45554

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.75  E-value=2.6e-08  Score=95.38  Aligned_cols=115  Identities=17%  Similarity=0.222  Sum_probs=79.9

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh--h-cCC----CceEEEcCCc-cccC
Q 018760           33 PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA--A-FLP----RTKILASVDY-AVTA  104 (350)
Q Consensus        33 ~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~--~-~~~----~~~v~~t~~~-~al~  104 (350)
                      |..++|||+|||+|++|.+++..|+..|.  +|.++|+++++++.    +....  . +.+    ..++..++|. ++++
T Consensus        25 m~~~~mkI~VIGaG~mG~alA~~La~~G~--~V~l~~r~~~~~~~----i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~   98 (356)
T 3k96_A           25 MEPFKHPIAILGAGSWGTALALVLARKGQ--KVRLWSYESDHVDE----MQAEGVNNRYLPNYPFPETLKAYCDLKASLE   98 (356)
T ss_dssp             --CCCSCEEEECCSHHHHHHHHHHHTTTC--CEEEECSCHHHHHH----HHHHSSBTTTBTTCCCCTTEEEESCHHHHHT
T ss_pred             ccccCCeEEEECccHHHHHHHHHHHHCCC--eEEEEeCCHHHHHH----HHHcCCCcccCCCCccCCCeEEECCHHHHHh
Confidence            34456899999999999999999999985  89999999887663    33211  0 111    2246667787 5799


Q ss_pred             CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcch----HHHHHHHHhC
Q 018760          105 GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDI----LTYVAWKLSG  169 (350)
Q Consensus       105 ~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~----~~~~~~~~sg  169 (350)
                      +||+||+++.                ...++++++.+..+ .|+.++|.++|..+.    +...+.+..+
T Consensus        99 ~aDvVilaVp----------------~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~  152 (356)
T 3k96_A           99 GVTDILIVVP----------------SFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELG  152 (356)
T ss_dssp             TCCEEEECCC----------------HHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHC
T ss_pred             cCCEEEECCC----------------HHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcC
Confidence            9999999962                12455666677665 467888888886654    3355555433

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.73  E-value=2.4e-08  Score=99.20  Aligned_cols=119  Identities=18%  Similarity=0.224  Sum_probs=78.1

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHH--------HHHHhh-cCCCceEEEcCCc-cc
Q 018760           33 PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLD--------LQHAAA-FLPRTKILASVDY-AV  102 (350)
Q Consensus        33 ~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~d--------l~~~~~-~~~~~~v~~t~~~-~a  102 (350)
                      +...+|||+|||+|.||.++|..|++.|.  +|+++|+++++++.....        +..... .....++.+++|+ ++
T Consensus         4 ~~~~~~~I~VIG~G~vG~~lA~~la~~G~--~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a   81 (478)
T 2y0c_A            4 HHHGSMNLTIIGSGSVGLVTGACLADIGH--DVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAA   81 (478)
T ss_dssp             ---CCCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHH
T ss_pred             ccCCCceEEEECcCHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHH
Confidence            34567999999999999999999999986  999999999877643221        110000 0001247778887 57


Q ss_pred             cCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEc-CCcch
Q 018760          103 TAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVA-NPVDI  159 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~t-NP~~~  159 (350)
                      +++||+||++++.|.+...+      -+...++++++.|.++ .|+.+|++.| -|.+.
T Consensus        82 ~~~aDvviiaVptp~~~~~~------~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~gt  134 (478)
T 2y0c_A           82 VAHGDVQFIAVGTPPDEDGS------ADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGT  134 (478)
T ss_dssp             HHHCSEEEECCCCCBCTTSS------BCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTH
T ss_pred             hhcCCEEEEEeCCCcccCCC------ccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCCc
Confidence            99999999999887643221      2345555566666665 4566666654 34443

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.72  E-value=7.6e-08  Score=94.93  Aligned_cols=114  Identities=16%  Similarity=0.222  Sum_probs=77.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHH--------HHHHhh-cCCCceEEEcCCcc-ccCCCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLD--------LQHAAA-FLPRTKILASVDYA-VTAGSD  107 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~d--------l~~~~~-~~~~~~v~~t~~~~-al~~aD  107 (350)
                      |||+|||+|.||.++|..|+..|.  +|+++|+++++++.....        +.+... .....++..+++++ ++++||
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~--~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aD   80 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGA--NVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEAD   80 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCC--EEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCC
Confidence            799999999999999999999985  999999999887643321        000000 00023466777874 699999


Q ss_pred             EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEc-CCcch
Q 018760          108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVA-NPVDI  159 (350)
Q Consensus       108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~t-NP~~~  159 (350)
                      +||++++.|.+++..      .+...++++++.|.++ .++.+||..| .|.+.
T Consensus        81 vViiaVptp~~~~~~------~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt  128 (450)
T 3gg2_A           81 IIFIAVGTPAGEDGS------ADMSYVLDAARSIGRAMSRYILIVTKSTVPVGS  128 (450)
T ss_dssp             EEEECCCCCBCTTSS------BCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTH
T ss_pred             EEEEEcCCCcccCCC------cChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcc
Confidence            999999887654321      2445566666666665 4666666665 45554

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.69  E-value=2.5e-08  Score=103.79  Aligned_cols=106  Identities=16%  Similarity=0.208  Sum_probs=74.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh----cCC---------CceEEEcCCccc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA----FLP---------RTKILASVDYAV  102 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~----~~~---------~~~v~~t~~~~a  102 (350)
                      +.+||+|||+|.||..+|..|+..|+  +|+++|+++++++.....+.+...    ...         ..++..++++++
T Consensus       313 ~i~kV~VIGaG~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~  390 (715)
T 1wdk_A          313 DVKQAAVLGAGIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGD  390 (715)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTT
T ss_pred             cCCEEEEECCChhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCHHH
Confidence            45689999999999999999999996  899999999877643222221110    000         124666778888


Q ss_pred             cCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcCCcch
Q 018760          103 TAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIVANPVDI  159 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP~~~  159 (350)
                      +++||+||+++.              ++..+.+++...+.+++ |+++  ++||.+.+
T Consensus       391 ~~~aDlVIeaV~--------------e~~~vk~~v~~~l~~~~~~~~I--lasntStl  432 (715)
T 1wdk_A          391 FGNVDLVVEAVV--------------ENPKVKQAVLAEVENHVREDAI--LASNTSTI  432 (715)
T ss_dssp             GGGCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCE--EEECCSSS
T ss_pred             HCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeE--EEeCCCCC
Confidence            999999999963              24556667777777775 4553  46776655

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.68  E-value=7.1e-08  Score=94.71  Aligned_cols=114  Identities=15%  Similarity=0.180  Sum_probs=74.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHH--------HHHHhhcC-CCceEEEcCCc-cccCCCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLD--------LQHAAAFL-PRTKILASVDY-AVTAGSD  107 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~d--------l~~~~~~~-~~~~v~~t~~~-~al~~aD  107 (350)
                      |||+|||+|.||.+++..|++.|.  +|+++|+++++++.....        +.+..... ...++..++++ +++++||
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~--~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aD   78 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGH--EVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSD   78 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC--EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCC
Confidence            699999999999999999999985  899999999877643221        11000000 01246667787 4789999


Q ss_pred             EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CC---CeEEEEE-cCCcch
Q 018760          108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SP---DCILLIV-ANPVDI  159 (350)
Q Consensus       108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p---~a~viv~-tNP~~~  159 (350)
                      +||++++.|......      -+...++++++.+.++ .+   +.+|+.. |+|.+.
T Consensus        79 vviiaVptp~~~~~~------~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~  129 (436)
T 1mv8_A           79 VSFICVGTPSKKNGD------LDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGT  129 (436)
T ss_dssp             EEEECCCCCBCTTSS------BCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTH
T ss_pred             EEEEEcCCCcccCCC------cchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCc
Confidence            999999877543211      1223334444444443 34   6777666 688776

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.65  E-value=1.8e-07  Score=91.99  Aligned_cols=114  Identities=19%  Similarity=0.289  Sum_probs=79.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh-h-cCC-----------CceEEEcCCc
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA-A-FLP-----------RTKILASVDY  100 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~-~-~~~-----------~~~v~~t~~~  100 (350)
                      ...+.+|+|||+|.||.++|..|+..|.  +|+++|+++++++.+.    ... + +.+           ..++.+|+|+
T Consensus         5 ~~~~~~~~vIGlG~vG~~~A~~La~~G~--~V~~~D~~~~kv~~l~----~g~~~~~epgl~~~~~~~~~~g~l~~ttd~   78 (446)
T 4a7p_A            5 HHGSVRIAMIGTGYVGLVSGACFSDFGH--EVVCVDKDARKIELLH----QNVMPIYEPGLDALVASNVKAGRLSFTTDL   78 (446)
T ss_dssp             --CCCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCSTTHHHHT----TTCCSSCCTTHHHHHHHHHHTTCEEEESCH
T ss_pred             cCCceEEEEEcCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHh----cCCCCccCCCHHHHHHhhcccCCEEEECCH
Confidence            4456799999999999999999999986  9999999999887432    211 0 001           2357778888


Q ss_pred             -cccCCCCEEEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEc-CCcchH
Q 018760          101 -AVTAGSDLCIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVA-NPVDIL  160 (350)
Q Consensus       101 -~al~~aDiVIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~t-NP~~~~  160 (350)
                       +++++||+||++++.|.++  +..       +...++++++.|.++ .++.++|..| -|.+..
T Consensus        79 ~ea~~~aDvvii~Vptp~~~~~~~~-------Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt  136 (446)
T 4a7p_A           79 AEGVKDADAVFIAVGTPSRRGDGHA-------DLSYVFAAAREIAENLTKPSVIVTKSTVPVGTG  136 (446)
T ss_dssp             HHHHTTCSEEEECCCCCBCTTTCCB-------CTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHH
T ss_pred             HHHHhcCCEEEEEcCCCCccccCCc-------cHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHH
Confidence             6899999999999888643  222       344555566666655 4666676665 455543

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.61  E-value=6.6e-08  Score=94.00  Aligned_cols=120  Identities=20%  Similarity=0.280  Sum_probs=76.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHH--------HHHhhcCCCceEEEcCCc-cccCCCCE
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL--------QHAAAFLPRTKILASVDY-AVTAGSDL  108 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl--------~~~~~~~~~~~v~~t~~~-~al~~aDi  108 (350)
                      |||+|||+|.||.+++..|++ +  .+|+++|+++++++......        ...... ...++..++++ +++++||+
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G--~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~-~~~~l~~t~~~~~~~~~aDv   76 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-Q--NEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKS-KQLSIKATLDSKAAYKEAEL   76 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-T--SEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH-SCCCEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCCHHHHHHHHHHhC-C--CEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHh-ccCcEEEeCCHHHHhcCCCE
Confidence            699999999999999999998 7  49999999998776432110        100000 02245666776 67899999


Q ss_pred             EEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEE-EcCCcchHHHHHHH
Q 018760          109 CIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLI-VANPVDILTYVAWK  166 (350)
Q Consensus       109 VIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv-~tNP~~~~~~~~~~  166 (350)
                      ||++++.+...+..+.|     ...+.++++.+.+..|+.+||. .|||.+....+...
T Consensus        77 viiavpt~~~~~~~~~d-----l~~v~~v~~~i~~l~~~~iVV~~ST~~~g~~~~l~~~  130 (402)
T 1dlj_A           77 VIIATPTNYNSRINYFD-----TQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQK  130 (402)
T ss_dssp             EEECCCCCEETTTTEEC-----CHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHH
T ss_pred             EEEecCCCcccCCCCcc-----HHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHHHH
Confidence            99998776422111111     1233333344433456777666 58999887665543

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.56  E-value=1.9e-07  Score=92.50  Aligned_cols=125  Identities=16%  Similarity=0.133  Sum_probs=77.4

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHH--------HHHHHhhcCCCceEEEcCCc-cccCC
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEML--------DLQHAAAFLPRTKILASVDY-AVTAG  105 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~--------dl~~~~~~~~~~~v~~t~~~-~al~~  105 (350)
                      +++|||+|||+|.||.++|..|+..+...+|+++|+++++++....        ++.+.........+..+++. +++++
T Consensus         3 ~~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~   82 (467)
T 2q3e_A            3 FEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKE   82 (467)
T ss_dssp             CCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHH
T ss_pred             CCccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhc
Confidence            3458999999999999999999998322489999999987764211        00000000001235566776 57899


Q ss_pred             CCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEE-cCCcchH
Q 018760          106 SDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIV-ANPVDIL  160 (350)
Q Consensus       106 aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~-tNP~~~~  160 (350)
                      ||+||++++.|........+ -..+...+.+.++.+.++ .|+.++|+. |+|.+..
T Consensus        83 aDvViiaVptp~~~~~v~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~  138 (467)
T 2q3e_A           83 ADLVFISVNTPTKTYGMGKG-RAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAA  138 (467)
T ss_dssp             CSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHH
T ss_pred             CCEEEEEcCCchhhcccccc-CCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHH
Confidence            99999998876532110000 011334455566666655 456666665 5777663

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=98.54  E-value=2e-07  Score=87.59  Aligned_cols=115  Identities=18%  Similarity=0.282  Sum_probs=76.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHH-hh-cCC----CceEEEcCCccccCCCCEE
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHA-AA-FLP----RTKILASVDYAVTAGSDLC  109 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~-~~-~~~----~~~v~~t~~~~al~~aDiV  109 (350)
                      .++||+|||+|.+|..++..|+..|.  +|.++ .++++++.    +... .. ..+    ..++..+++.++++++|+|
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~--~V~l~-~~~~~~~~----i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   90 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGH--EVILI-ARPQHVQA----IEATGLRLETQSFDEQVKVSASSDPSAVQGADLV   90 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTC--EEEEE-CCHHHHHH----HHHHCEEEECSSCEEEECCEEESCGGGGTTCSEE
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCC--eEEEE-EcHhHHHH----HHhCCeEEEcCCCcEEEeeeeeCCHHHcCCCCEE
Confidence            46899999999999999999999985  99999 88776653    3221 10 001    1234445667778999999


Q ss_pred             EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHHHHHHHHhCCCCCcEee
Q 018760          110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILTYVAWKLSGLPSNRVIG  177 (350)
Q Consensus       110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG  177 (350)
                      |+++...                .++++++.+..+ .|+.+++.++|.++... .+.+.  +| +++++
T Consensus        91 ilavk~~----------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~-~l~~~--~~-~~vl~  139 (318)
T 3hwr_A           91 LFCVKST----------------DTQSAALAMKPALAKSALVLSLQNGVENAD-TLRSL--LE-QEVAA  139 (318)
T ss_dssp             EECCCGG----------------GHHHHHHHHTTTSCTTCEEEEECSSSSHHH-HHHHH--CC-SEEEE
T ss_pred             EEEcccc----------------cHHHHHHHHHHhcCCCCEEEEeCCCCCcHH-HHHHH--cC-CcEEE
Confidence            9996321                123444555554 57788999999998754 33344  34 56663

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=98.51  E-value=3.3e-07  Score=86.21  Aligned_cols=69  Identities=16%  Similarity=0.292  Sum_probs=52.7

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEE
Q 018760           33 PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIV  111 (350)
Q Consensus        33 ~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi  111 (350)
                      ...++|||+|||+|.||..++..|+..|.  +|+++|+++++++.    +...     .  +..+++. +++++||+||+
T Consensus        27 ~~~~~~~I~iIG~G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~~----l~~~-----g--~~~~~~~~e~~~~aDvVi~   93 (320)
T 4dll_A           27 SDPYARKITFLGTGSMGLPMARRLCEAGY--ALQVWNRTPARAAS----LAAL-----G--ATIHEQARAAARDADIVVS   93 (320)
T ss_dssp             --CCCSEEEEECCTTTHHHHHHHHHHTTC--EEEEECSCHHHHHH----HHTT-----T--CEEESSHHHHHTTCSEEEE
T ss_pred             cccCCCEEEEECccHHHHHHHHHHHhCCC--eEEEEcCCHHHHHH----HHHC-----C--CEeeCCHHHHHhcCCEEEE
Confidence            34466899999999999999999999986  99999999887653    3221     1  2334565 56899999999


Q ss_pred             ecC
Q 018760          112 TAG  114 (350)
Q Consensus       112 ~~g  114 (350)
                      +..
T Consensus        94 ~vp   96 (320)
T 4dll_A           94 MLE   96 (320)
T ss_dssp             CCS
T ss_pred             ECC
Confidence            974

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=98.51  E-value=4.2e-07  Score=82.18  Aligned_cols=105  Identities=23%  Similarity=0.296  Sum_probs=64.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccc--hHHHHHH-----HHHHhhcCCCceEEEcCCccccCCC
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADK--LRGEMLD-----LQHAAAFLPRTKILASVDYAVTAGS  106 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~--l~~~~~d-----l~~~~~~~~~~~v~~t~~~~al~~a  106 (350)
                      ....+||+|||+|.||.+++..|+..+.  +|+++|+++++  .+.....     +........  .+..++..+++++|
T Consensus        16 ~~~~~kIgiIG~G~mG~alA~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~e~~~~a   91 (245)
T 3dtt_A           16 YFQGMKIAVLGTGTVGRTMAGALADLGH--EVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHP--HVHLAAFADVAAGA   91 (245)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHTCC-------CCHHHHGGGST--TCEEEEHHHHHHHC
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcC--ceeccCHHHHHhcC
Confidence            4456899999999999999999999985  99999999876  2111111     111111111  12223234678999


Q ss_pred             CEEEEecCCCcCccccHHHHHHhhHHHHHHH-HhhhhccCCCeEEEEEcCCcc
Q 018760          107 DLCIVTAGARQIAGESRLNLLQRNLSLFKAI-IPPLVKYSPDCILLIVANPVD  158 (350)
Q Consensus       107 DiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i-~~~i~~~~p~a~viv~tNP~~  158 (350)
                      |+||++.....            ..+++.++ .+.    -++.++|.++||.+
T Consensus        92 DvVilavp~~~------------~~~~~~~i~~~~----l~g~ivi~~s~~~~  128 (245)
T 3dtt_A           92 ELVVNATEGAS------------SIAALTAAGAEN----LAGKILVDIANPLD  128 (245)
T ss_dssp             SEEEECSCGGG------------HHHHHHHHCHHH----HTTSEEEECCCCEE
T ss_pred             CEEEEccCcHH------------HHHHHHHhhhhh----cCCCEEEECCCCCC
Confidence            99999964221            12333344 222    26788999999874

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.50  E-value=4.2e-07  Score=83.98  Aligned_cols=113  Identities=16%  Similarity=0.273  Sum_probs=73.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCC-CCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDF-VEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~-~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ++||+|||+|+||.+++..|+..++ ..+|+++|+++++++.    +....    .  +..+++. +++++||+||+++ 
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~----l~~~~----g--i~~~~~~~~~~~~aDvVilav-   71 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDF----FKEKC----G--VHTTQDNRQGALNADVVVLAV-   71 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHH----HHHTT----C--CEEESCHHHHHSSCSEEEECS-
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHH----HHHHc----C--CEEeCChHHHHhcCCeEEEEe-
Confidence            4799999999999999999999884 3489999999987663    33221    1  2234454 6789999999997 


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhcc--CCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKY--SPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~--~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                         +|.            .+.++.+.+..+  .++.++|..++.+.+  ..+.+..+- +.+++++
T Consensus        72 ---~p~------------~~~~vl~~l~~~~l~~~~iiiS~~agi~~--~~l~~~l~~-~~~vvr~  119 (280)
T 3tri_A           72 ---KPH------------QIKMVCEELKDILSETKILVISLAVGVTT--PLIEKWLGK-ASRIVRA  119 (280)
T ss_dssp             ---CGG------------GHHHHHHHHHHHHHTTTCEEEECCTTCCH--HHHHHHHTC-CSSEEEE
T ss_pred             ---CHH------------HHHHHHHHHHhhccCCCeEEEEecCCCCH--HHHHHHcCC-CCeEEEE
Confidence               221            123333444443  466677766666653  233333331 2467655

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.47  E-value=2.3e-07  Score=87.70  Aligned_cols=103  Identities=13%  Similarity=0.220  Sum_probs=68.2

Q ss_pred             CCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh--cCCC--ceEEEcCCccccCCCC
Q 018760           32 SPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA--FLPR--TKILASVDYAVTAGSD  107 (350)
Q Consensus        32 ~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~--~~~~--~~v~~t~~~~al~~aD  107 (350)
                      -+...++||+|||+|+||++++..|+..|.  +|.++|+++++++.    +.....  +.+.  ..+..+++.++++++|
T Consensus         9 ~~~~~~~kI~iIG~G~mG~ala~~L~~~G~--~V~~~~r~~~~~~~----l~~~g~~~~~~~~~~~~~~~~~~~~~~~aD   82 (335)
T 1z82_A            9 HHHHMEMRFFVLGAGSWGTVFAQMLHENGE--EVILWARRKEIVDL----INVSHTSPYVEESKITVRATNDLEEIKKED   82 (335)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSHHHHHH----HHHHSCBTTBTTCCCCSEEESCGGGCCTTE
T ss_pred             cccccCCcEEEECcCHHHHHHHHHHHhCCC--eEEEEeCCHHHHHH----HHHhCCcccCCCCeeeEEEeCCHHHhcCCC
Confidence            345567899999999999999999999985  99999999877664    332210  1111  0234455664488999


Q ss_pred             EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc
Q 018760          108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD  158 (350)
Q Consensus       108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~  158 (350)
                      +||++...                ..++++++.+..  ++.++|.++|.++
T Consensus        83 vVil~vk~----------------~~~~~v~~~l~~--~~~~vv~~~nGi~  115 (335)
T 1z82_A           83 ILVIAIPV----------------QYIREHLLRLPV--KPSMVLNLSKGIE  115 (335)
T ss_dssp             EEEECSCG----------------GGHHHHHTTCSS--CCSEEEECCCCCC
T ss_pred             EEEEECCH----------------HHHHHHHHHhCc--CCCEEEEEeCCCC
Confidence            99999631                123444455554  7778889998654

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=98.46  E-value=9e-07  Score=82.81  Aligned_cols=94  Identities=11%  Similarity=0.140  Sum_probs=66.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      ..++|||+|||+|.||..++..|+..|.  +|+++|+++++++.    +...     .  +..+++. +++++||+||++
T Consensus        18 ~~~m~~I~iIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~----l~~~-----g--~~~~~~~~~~~~~aDvvi~~   84 (310)
T 3doj_A           18 GSHMMEVGFLGLGIMGKAMSMNLLKNGF--KVTVWNRTLSKCDE----LVEH-----G--ASVCESPAEVIKKCKYTIAM   84 (310)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSGGGGHH----HHHT-----T--CEECSSHHHHHHHCSEEEEC
T ss_pred             cccCCEEEEECccHHHHHHHHHHHHCCC--eEEEEeCCHHHHHH----HHHC-----C--CeEcCCHHHHHHhCCEEEEE
Confidence            4456899999999999999999999986  99999999988764    2221     1  2234555 568999999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHH---hhhhcc-CCCeEEEEEcC
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAII---PPLVKY-SPDCILLIVAN  155 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~---~~i~~~-~p~a~viv~tN  155 (350)
                      ...+               ..++++.   +.+... .++.++|..|+
T Consensus        85 vp~~---------------~~~~~v~~~~~~l~~~l~~g~~vv~~st  116 (310)
T 3doj_A           85 LSDP---------------CAALSVVFDKGGVLEQICEGKGYIDMST  116 (310)
T ss_dssp             CSSH---------------HHHHHHHHSTTCGGGGCCTTCEEEECSC
T ss_pred             cCCH---------------HHHHHHHhCchhhhhccCCCCEEEECCC
Confidence            7432               1233444   444443 57777777765

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.42  E-value=2.1e-06  Score=84.03  Aligned_cols=114  Identities=14%  Similarity=0.257  Sum_probs=75.1

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh-h-cCC-----------CceEEEcCC
Q 018760           33 PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA-A-FLP-----------RTKILASVD   99 (350)
Q Consensus        33 ~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~-~-~~~-----------~~~v~~t~~   99 (350)
                      +.....|.+|||+|.||.++|..|++.|.  +|+.+|+++++++.+    +... + +.+           ..++.+|+|
T Consensus         7 ~~~~~~~~~ViGlGyvGlp~A~~La~~G~--~V~~~D~~~~kv~~L----~~g~~pi~epgl~~ll~~~~~~g~l~~ttd   80 (431)
T 3ojo_A            7 HHHHGSKLTVVGLGYIGLPTSIMFAKHGV--DVLGVDINQQTIDKL----QNGQISIEEPGLQEVYEEVLSSGKLKVSTT   80 (431)
T ss_dssp             -----CEEEEECCSTTHHHHHHHHHHTTC--EEEEECSCHHHHHHH----HTTCCSSCCTTHHHHHHHHHHTTCEEEESS
T ss_pred             ccccCCccEEEeeCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHH----HCCCCCcCCCCHHHHHHhhcccCceEEeCc
Confidence            33445699999999999999999999996  999999999888743    3211 0 000           235666766


Q ss_pred             ccccCCCCEEEEecCCCcCcc---ccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEc-CCcchHHH
Q 018760          100 YAVTAGSDLCIVTAGARQIAG---ESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVA-NPVDILTY  162 (350)
Q Consensus       100 ~~al~~aDiVIi~~g~~~~~g---~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~t-NP~~~~~~  162 (350)
                         +++||+||++++.|....   ..       ++..++..++.+.++ .|..++|..| -|.+..-.
T Consensus        81 ---~~~aDvvii~VpTp~~~~~~~~~-------Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~  138 (431)
T 3ojo_A           81 ---PEASDVFIIAVPTPNNDDQYRSC-------DISLVMRALDSILPFLKKGNTIIVESTIAPKTMDD  138 (431)
T ss_dssp             ---CCCCSEEEECCCCCBCSSSSCBB-------CCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHH
T ss_pred             ---hhhCCEEEEEeCCCccccccCCc-------cHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHH
Confidence               468999999999886432   21       234445555566664 4666666654 56665433

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.42  E-value=1.7e-06  Score=76.36  Aligned_cols=78  Identities=19%  Similarity=0.323  Sum_probs=56.9

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecC
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAG  114 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g  114 (350)
                      ...+||+|||+|.||.+++..|+..+.  +|+++|++++                            ++++||+||++..
T Consensus        17 ~~~~~I~iiG~G~mG~~la~~l~~~g~--~V~~~~~~~~----------------------------~~~~aD~vi~av~   66 (209)
T 2raf_A           17 FQGMEITIFGKGNMGQAIGHNFEIAGH--EVTYYGSKDQ----------------------------ATTLGEIVIMAVP   66 (209)
T ss_dssp             ---CEEEEECCSHHHHHHHHHHHHTTC--EEEEECTTCC----------------------------CSSCCSEEEECSC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEcCCHH----------------------------HhccCCEEEEcCC
Confidence            346899999999999999999999885  9999999875                            5678999999963


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD  158 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~  158 (350)
                       +               ..++++.+.+..+.++.+++.++|+.+
T Consensus        67 -~---------------~~~~~v~~~l~~~~~~~~vi~~~~g~~   94 (209)
T 2raf_A           67 -Y---------------PALAALAKQYATQLKGKIVVDITNPLN   94 (209)
T ss_dssp             -H---------------HHHHHHHHHTHHHHTTSEEEECCCCBC
T ss_pred             -c---------------HHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence             1               112233334433323778889999765

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=98.40  E-value=3.5e-07  Score=86.50  Aligned_cols=99  Identities=19%  Similarity=0.297  Sum_probs=69.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh-hc-CC----CceEEEcCCccccCCCCEEE
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA-AF-LP----RTKILASVDYAVTAGSDLCI  110 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~-~~-~~----~~~v~~t~~~~al~~aDiVI  110 (350)
                      .|||+|||+|.||..++..|+..+.  +|.++|++ ++++    .+.... .. .+    ..++..+++.+++.++|+||
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~--~V~~~~r~-~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi   75 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGE--AINVLARG-ATLQ----ALQTAGLRLTEDGATHTLPVRATHDAAALGEQDVVI   75 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTC--CEEEECCH-HHHH----HHHHTCEEEEETTEEEEECCEEESCHHHHCCCSEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC--EEEEEECh-HHHH----HHHHCCCEEecCCCeEEEeeeEECCHHHcCCCCEEE
Confidence            4799999999999999999999985  89999985 4443    233211 00 00    11234455666689999999


Q ss_pred             EecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcc
Q 018760          111 VTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVD  158 (350)
Q Consensus       111 i~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~  158 (350)
                      +++.                ...++++++.+..+ .|+.+|+.++|.++
T Consensus        76 lavk----------------~~~~~~~~~~l~~~l~~~~~iv~~~nGi~  108 (335)
T 3ghy_A           76 VAVK----------------APALESVAAGIAPLIGPGTCVVVAMNGVP  108 (335)
T ss_dssp             ECCC----------------HHHHHHHHGGGSSSCCTTCEEEECCSSSC
T ss_pred             EeCC----------------chhHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence            9963                12345666777765 57888999999964

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=98.40  E-value=1.9e-06  Score=80.24  Aligned_cols=93  Identities=11%  Similarity=0.198  Sum_probs=64.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ++|||+|||+|.||.+++..|+..|.  +|+++|+++++++.    +....     .... +++. +++++||+||++..
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~~----~~~~g-----~~~~-~~~~~e~~~~aDvvi~~vp   73 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSCLRAGL--STWGADLNPQACAN----LLAEG-----ACGA-AASAREFAGVVDALVILVV   73 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHH----HHHTT-----CSEE-ESSSTTTTTTCSEEEECCS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC--eEEEEECCHHHHHH----HHHcC-----Cccc-cCCHHHHHhcCCEEEEECC
Confidence            45799999999999999999999986  99999999987663    33211     1221 3344 67899999999974


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHH---hhhhcc-CCCeEEEEEcC
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAII---PPLVKY-SPDCILLIVAN  155 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~---~~i~~~-~p~a~viv~tN  155 (350)
                      .+               ..++++.   +.+.+. .|+.++|..|+
T Consensus        74 ~~---------------~~~~~v~~~~~~l~~~l~~g~ivv~~st  103 (303)
T 3g0o_A           74 NA---------------AQVRQVLFGEDGVAHLMKPGSAVMVSST  103 (303)
T ss_dssp             SH---------------HHHHHHHC--CCCGGGSCTTCEEEECSC
T ss_pred             CH---------------HHHHHHHhChhhHHhhCCCCCEEEecCC
Confidence            22               1233343   445444 57777877765

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.39  E-value=1.6e-06  Score=81.63  Aligned_cols=99  Identities=15%  Similarity=0.241  Sum_probs=66.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCC--CeEEEEeCCcc--chHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCE
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFV--EELALVDAKAD--KLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDL  108 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~--~ev~L~D~~~~--~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDi  108 (350)
                      +.++|||+|||+|.||.+++..|+..|..  .+|+++|++++  +++.    +...     ..++  +++. +++++||+
T Consensus        19 ~~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~----l~~~-----G~~~--~~~~~e~~~~aDv   87 (322)
T 2izz_A           19 YFQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSA----LRKM-----GVKL--TPHNKETVQHSDV   87 (322)
T ss_dssp             ---CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHH----HHHH-----TCEE--ESCHHHHHHHCSE
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHH----HHHc-----CCEE--eCChHHHhccCCE
Confidence            34457999999999999999999998832  38999999886  5543    2221     1233  3344 67889999


Q ss_pred             EEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcch
Q 018760          109 CIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDI  159 (350)
Q Consensus       109 VIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~  159 (350)
                      ||+++.    +.            .++++++.+... .|+.++|.++|.+..
T Consensus        88 Vilav~----~~------------~~~~vl~~l~~~l~~~~ivvs~s~gi~~  123 (322)
T 2izz_A           88 LFLAVK----PH------------IIPFILDEIGADIEDRHIVVSCAAGVTI  123 (322)
T ss_dssp             EEECSC----GG------------GHHHHHHHHGGGCCTTCEEEECCTTCCH
T ss_pred             EEEEeC----HH------------HHHHHHHHHHhhcCCCCEEEEeCCCCCH
Confidence            999973    21            122333344443 567888888887764

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.38  E-value=6.7e-07  Score=85.84  Aligned_cols=102  Identities=18%  Similarity=0.241  Sum_probs=69.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCC-----CCeEEEEeCCcc-----chHHHHHHHHHHh---hcCC----CceEEEcCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDF-----VEELALVDAKAD-----KLRGEMLDLQHAA---AFLP----RTKILASVD   99 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~-----~~ev~L~D~~~~-----~l~~~~~dl~~~~---~~~~----~~~v~~t~~   99 (350)
                      +|||+|||+|.||.+++..|+..|.     ..+|+++|++++     +++.    +....   .+.+    ...+..+++
T Consensus        21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~i~~~~~   96 (375)
T 1yj8_A           21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDI----INNKHENTKYLKGVPLPHNIVAHSD   96 (375)
T ss_dssp             CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHH----HHHHCBCTTTSTTCBCCTTEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHH----HHhcCcccccCCcccCcCCeEEECC
Confidence            3689999999999999999988771     138999999887     5543    33211   0111    123555667


Q ss_pred             c-cccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhc----c-CCCeEEEEEcCCcc
Q 018760          100 Y-AVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVK----Y-SPDCILLIVANPVD  158 (350)
Q Consensus       100 ~-~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~----~-~p~a~viv~tNP~~  158 (350)
                      . +++++||+||+++..                ..++++++.+..    + .|+.++|..+|.++
T Consensus        97 ~~ea~~~aDvVilav~~----------------~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~  145 (375)
T 1yj8_A           97 LASVINDADLLIFIVPC----------------QYLESVLASIKESESIKIASHAKAISLTKGFI  145 (375)
T ss_dssp             THHHHTTCSEEEECCCH----------------HHHHHHHHHHTC---CCCCTTCEEEECCCSCE
T ss_pred             HHHHHcCCCEEEEcCCH----------------HHHHHHHHHHhhhhhccCCCCCEEEEeCCccc
Confidence            6 568999999999631                234555666665    4 46788888888643

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.37  E-value=1.6e-06  Score=76.05  Aligned_cols=99  Identities=16%  Similarity=0.244  Sum_probs=65.0

Q ss_pred             CeEEEEc-CChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecCC
Q 018760           38 TKISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAGA  115 (350)
Q Consensus        38 ~KI~IIG-AG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g~  115 (350)
                      |||+||| +|.+|..++..|+..+.  +|+++|+++++++.....+...  . ...++.. ++. ++++++|+||++.. 
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~--~-~~~~~~~-~~~~~~~~~~D~Vi~~~~-   73 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREEKAEAKAAEYRRI--A-GDASITG-MKNEDAAEACDIAVLTIP-   73 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHHHHHHHHHHHHHH--H-SSCCEEE-EEHHHHHHHCSEEEECSC-
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhccc--c-ccCCCCh-hhHHHHHhcCCEEEEeCC-
Confidence            6899999 89999999999999885  8999999988766433322211  1 1112332 244 56889999999963 


Q ss_pred             CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc
Q 018760          116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD  158 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~  158 (350)
                         +.            ..+++.+.+.+..++.+++..+|+.+
T Consensus        74 ---~~------------~~~~~~~~l~~~~~~~~vi~~~~g~~  101 (212)
T 1jay_A           74 ---WE------------HAIDTARDLKNILREKIVVSPLVPVS  101 (212)
T ss_dssp             ---HH------------HHHHHHHHTHHHHTTSEEEECCCCEE
T ss_pred             ---hh------------hHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence               11            11222333333224778889999876

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.37  E-value=3.4e-06  Score=78.20  Aligned_cols=115  Identities=15%  Similarity=0.208  Sum_probs=70.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh-hc--CCC---ceEEEcCCc---cccCCCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA-AF--LPR---TKILASVDY---AVTAGSD  107 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~-~~--~~~---~~v~~t~~~---~al~~aD  107 (350)
                      +|||+|||+|.||..++..|+..|.  +|+++|+++++++.    +.... ..  ...   .++..+++.   ++++++|
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~--~V~~~~r~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (316)
T 2ew2_A            3 AMKIAIAGAGAMGSRLGIMLHQGGN--DVTLIDQWPAHIEA----IRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVD   76 (316)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHH----HHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCS
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCC--cEEEEECCHHHHHH----HHhCCEEEEeCCCeeEecceeecchhhcccCCCCC
Confidence            4799999999999999999999885  99999999877653    22211 00  000   011122222   2345999


Q ss_pred             EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHHHHHHHHhCCCCCcEe
Q 018760          108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILTYVAWKLSGLPSNRVI  176 (350)
Q Consensus       108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~~~~~~~sg~~~~rvi  176 (350)
                      +||++...                ..+.++.+.+..+ .|+.+++.++|..+.. ..+.+.  +++.+++
T Consensus        77 ~vi~~v~~----------------~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~-~~l~~~--~~~~~vi  127 (316)
T 2ew2_A           77 LIIALTKA----------------QQLDAMFKAIQPMITEKTYVLCLLNGLGHE-DVLEKY--VPKENIL  127 (316)
T ss_dssp             EEEECSCH----------------HHHHHHHHHHGGGCCTTCEEEECCSSSCTH-HHHTTT--SCGGGEE
T ss_pred             EEEEEecc----------------ccHHHHHHHHHHhcCCCCEEEEecCCCCcH-HHHHHH--cCCccEE
Confidence            99999631                1124444555554 5678888888887642 223222  3444665

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=98.36  E-value=3.1e-06  Score=79.45  Aligned_cols=70  Identities=10%  Similarity=0.206  Sum_probs=51.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-c-ccCCCCEEEEec
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-A-VTAGSDLCIVTA  113 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~-al~~aDiVIi~~  113 (350)
                      ..+||+|||+|.||..++..|...|...+|+++|+++++++.    .....   ....  .+++. + ++++||+||+++
T Consensus        32 ~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~----a~~~G---~~~~--~~~~~~~~~~~~aDvVilav  102 (314)
T 3ggo_A           32 SMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISK----AVDLG---IIDE--GTTSIAKVEDFSPDFVMLSS  102 (314)
T ss_dssp             SCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHH----HHHTT---SCSE--EESCTTGGGGGCCSEEEECS
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHH----HHHCC---Ccch--hcCCHHHHhhccCCEEEEeC
Confidence            347999999999999999999999865589999999876653    11111   1112  23455 5 689999999996


Q ss_pred             C
Q 018760          114 G  114 (350)
Q Consensus       114 g  114 (350)
                      .
T Consensus       103 p  103 (314)
T 3ggo_A          103 P  103 (314)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=98.35  E-value=1.6e-06  Score=80.11  Aligned_cols=91  Identities=11%  Similarity=0.140  Sum_probs=64.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAGA  115 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g~  115 (350)
                      +|||+|||+|.||.+++..|+..|.  +|+++|+++++++.    +.+.       .+..+++. +++++||+||++...
T Consensus         1 s~~i~iIG~G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~~----~~~~-------g~~~~~~~~~~~~~aDvvi~~vp~   67 (287)
T 3pef_A            1 SQKFGFIGLGIMGSAMAKNLVKAGC--SVTIWNRSPEKAEE----LAAL-------GAERAATPCEVVESCPVTFAMLAD   67 (287)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSGGGGHH----HHHT-------TCEECSSHHHHHHHCSEEEECCSS
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCC--eEEEEcCCHHHHHH----HHHC-------CCeecCCHHHHHhcCCEEEEEcCC
Confidence            3799999999999999999999985  99999999988763    3221       12334565 568899999999642


Q ss_pred             CcCccccHHHHHHhhHHHHHHHH---hhhhcc-CCCeEEEEEcC
Q 018760          116 RQIAGESRLNLLQRNLSLFKAII---PPLVKY-SPDCILLIVAN  155 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~---~~i~~~-~p~a~viv~tN  155 (350)
                      +               ..++++.   +.+.+. .++.++|..|+
T Consensus        68 ~---------------~~~~~v~~~~~~l~~~l~~~~~vi~~st   96 (287)
T 3pef_A           68 P---------------AAAEEVCFGKHGVLEGIGEGRGYVDMST   96 (287)
T ss_dssp             H---------------HHHHHHHHSTTCHHHHCCTTCEEEECSC
T ss_pred             H---------------HHHHHHHcCcchHhhcCCCCCEEEeCCC
Confidence            2               1233334   444443 46777777765

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.33  E-value=1.7e-06  Score=78.79  Aligned_cols=94  Identities=20%  Similarity=0.375  Sum_probs=64.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAGA  115 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g~  115 (350)
                      +|||+|||+|.||..++..|...+. ..|.++|+++++++.    +....    ...  .+++. +.++++|+||++...
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~-~~v~~~~~~~~~~~~----~~~~~----g~~--~~~~~~~~~~~~Dvvi~av~~   78 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGF-RIVQVYSRTEESARE----LAQKV----EAE--YTTDLAEVNPYAKLYIVSLKD   78 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSHHHHHH----HHHHT----TCE--EESCGGGSCSCCSEEEECCCH
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCC-eEEEEEeCCHHHHHH----HHHHc----CCc--eeCCHHHHhcCCCEEEEecCH
Confidence            5799999999999999999998885 238999999877653    33221    122  24466 567899999999631


Q ss_pred             CcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCc
Q 018760          116 RQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPV  157 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~  157 (350)
                                      ..++++.+.+.+. .++.+++..++-.
T Consensus        79 ----------------~~~~~v~~~l~~~~~~~~ivv~~s~~~  105 (266)
T 3d1l_A           79 ----------------SAFAELLQGIVEGKREEALMVHTAGSI  105 (266)
T ss_dssp             ----------------HHHHHHHHHHHTTCCTTCEEEECCTTS
T ss_pred             ----------------HHHHHHHHHHHhhcCCCcEEEECCCCC
Confidence                            1124445555554 3778888887643

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=98.33  E-value=1.8e-06  Score=79.71  Aligned_cols=91  Identities=13%  Similarity=0.163  Sum_probs=64.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAGA  115 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g~  115 (350)
                      ++||+|||+|.||..++..|+..|.  +|+++|+++++++.    +...     .  +..+++. +++++||+||++...
T Consensus         1 M~~I~iiG~G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~~----~~~~-----g--~~~~~~~~~~~~~advvi~~v~~   67 (287)
T 3pdu_A            1 MTTYGFLGLGIMGGPMAANLVRAGF--DVTVWNRNPAKCAP----LVAL-----G--ARQASSPAEVCAACDITIAMLAD   67 (287)
T ss_dssp             CCCEEEECCSTTHHHHHHHHHHHTC--CEEEECSSGGGGHH----HHHH-----T--CEECSCHHHHHHHCSEEEECCSS
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCCC--eEEEEcCCHHHHHH----HHHC-----C--CeecCCHHHHHHcCCEEEEEcCC
Confidence            3699999999999999999999985  89999999988764    2221     1  2234565 568899999999742


Q ss_pred             CcCccccHHHHHHhhHHHHHHHH---hhhhcc-CCCeEEEEEcC
Q 018760          116 RQIAGESRLNLLQRNLSLFKAII---PPLVKY-SPDCILLIVAN  155 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~---~~i~~~-~p~a~viv~tN  155 (350)
                      +               ..++++.   +.+.+. .++.++|..|+
T Consensus        68 ~---------------~~~~~v~~~~~~l~~~l~~g~~vv~~st   96 (287)
T 3pdu_A           68 P---------------AAAREVCFGANGVLEGIGGGRGYIDMST   96 (287)
T ss_dssp             H---------------HHHHHHHHSTTCGGGTCCTTCEEEECSC
T ss_pred             H---------------HHHHHHHcCchhhhhcccCCCEEEECCC
Confidence            2               1234444   455444 56777777765

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.32  E-value=8.2e-07  Score=84.27  Aligned_cols=102  Identities=19%  Similarity=0.261  Sum_probs=68.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCC-----CCeEEEEeCCcc-----chHHHHHHHHHHh---hcCC----CceEEEcCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDF-----VEELALVDAKAD-----KLRGEMLDLQHAA---AFLP----RTKILASVD   99 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~-----~~ev~L~D~~~~-----~l~~~~~dl~~~~---~~~~----~~~v~~t~~   99 (350)
                      +|||+|||+|.||.+++..|+..+.     ..+|+++|++++     +++.    +....   .+.+    ...+..+++
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~   83 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEI----INTQHENVKYLPGHKLPPNVVAVPD   83 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHH----HHHHSCCTTTSTTCCCCTTEEEESS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHH----HHhcCcccccCCcccCccCeEEEcC
Confidence            4799999999999999999998771     038999999987     4442    32211   0111    123555667


Q ss_pred             c-cccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcc
Q 018760          100 Y-AVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVD  158 (350)
Q Consensus       100 ~-~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~  158 (350)
                      . +++++||+||+++...                .+.++.+.+..+ .|+.+++.++|..+
T Consensus        84 ~~~~~~~aD~Vilav~~~----------------~~~~v~~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           84 VVQAAEDADILIFVVPHQ----------------FIGKICDQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HHHHHTTCSEEEECCCGG----------------GHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred             HHHHHcCCCEEEEeCCHH----------------HHHHHHHHHHhhCCCCCEEEEECCccC
Confidence            6 5689999999996311                233444555554 46788888888554

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=98.32  E-value=4.9e-06  Score=76.67  Aligned_cols=106  Identities=15%  Similarity=0.090  Sum_probs=68.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAGA  115 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g~  115 (350)
                      +|||+|||+|.||..++..|...+...+|+++|+++++++.    +... ..  ..  ..+++. +++++||+||+++..
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~----~~~~-g~--~~--~~~~~~~~~~~~aDvVilavp~   76 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDI----ALER-GI--VD--EATADFKVFAALADVIILAVPI   76 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHH----HHHT-TS--CS--EEESCTTTTGGGCSEEEECSCH
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHH----HHHc-CC--cc--cccCCHHHhhcCCCEEEEcCCH
Confidence            57999999999999999999988543489999999876653    2221 11  11  223455 568899999999631


Q ss_pred             CcCccccHHHHHHhhHHHHHHHHhhhhcc--CCCeEEEEEcCCcchHHHHHHHH
Q 018760          116 RQIAGESRLNLLQRNLSLFKAIIPPLVKY--SPDCILLIVANPVDILTYVAWKL  167 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~--~p~a~viv~tNP~~~~~~~~~~~  167 (350)
                                      ...+++.+.+..+  .++.+++.++|.....+..+.+.
T Consensus        77 ----------------~~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~  114 (290)
T 3b1f_A           77 ----------------KKTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYY  114 (290)
T ss_dssp             ----------------HHHHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHH
T ss_pred             ----------------HHHHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHh
Confidence                            1124444555543  46777776666443333444433

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=98.31  E-value=2.4e-06  Score=79.39  Aligned_cols=91  Identities=20%  Similarity=0.286  Sum_probs=63.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ..+||+|||+|.||..++..|+..|.  +|+++|+++++++.    +...     .  +..+++. +.++ ||+||++..
T Consensus        14 ~~~~I~vIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~----~~~~-----g--~~~~~~~~~~~~-aDvvi~~vp   79 (296)
T 3qha_A           14 EQLKLGYIGLGNMGAPMATRMTEWPG--GVTVYDIRIEAMTP----LAEA-----G--ATLADSVADVAA-ADLIHITVL   79 (296)
T ss_dssp             -CCCEEEECCSTTHHHHHHHHTTSTT--CEEEECSSTTTSHH----HHHT-----T--CEECSSHHHHTT-SSEEEECCS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHH----HHHC-----C--CEEcCCHHHHHh-CCEEEEECC
Confidence            35799999999999999999999985  89999999988763    2221     1  2335566 4567 999999974


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcC
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVAN  155 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN  155 (350)
                      .+               ..++++.+.+.+. .|+.++|..|+
T Consensus        80 ~~---------------~~~~~v~~~l~~~l~~g~ivv~~st  106 (296)
T 3qha_A           80 DD---------------AQVREVVGELAGHAKPGTVIAIHST  106 (296)
T ss_dssp             SH---------------HHHHHHHHHHHTTCCTTCEEEECSC
T ss_pred             Ch---------------HHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            32               1223333444443 46777777764

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.28  E-value=9.7e-07  Score=79.72  Aligned_cols=113  Identities=20%  Similarity=0.358  Sum_probs=71.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCC--CeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFV--EELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~--~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      +|||+|||+|.||.+++..|+..+..  .+|+++|+++++++.    +....      .+..+++. +++++||+||++.
T Consensus         2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~----~~~~~------g~~~~~~~~e~~~~aDvVilav   71 (247)
T 3gt0_A            2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKN----ASEKY------GLTTTTDNNEVAKNADILILSI   71 (247)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHH----HHHHH------CCEECSCHHHHHHHCSEEEECS
T ss_pred             CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHH----HHHHh------CCEEeCChHHHHHhCCEEEEEe
Confidence            36999999999999999999998852  489999999987763    32221      12234455 6688999999997


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                      .    +            ..++++.+.+..+ .|+.++|..++.+..  ..+.+..+ +..++++.
T Consensus        72 ~----~------------~~~~~v~~~l~~~l~~~~~vvs~~~gi~~--~~l~~~~~-~~~~~v~~  118 (247)
T 3gt0_A           72 K----P------------DLYASIINEIKEIIKNDAIIVTIAAGKSI--ESTENAFN-KKVKVVRV  118 (247)
T ss_dssp             C----T------------TTHHHHC---CCSSCTTCEEEECSCCSCH--HHHHHHHC-SCCEEEEE
T ss_pred             C----H------------HHHHHHHHHHHhhcCCCCEEEEecCCCCH--HHHHHHhC-CCCcEEEE
Confidence            2    2            1234455566665 466666656555553  23334332 12356544

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=98.27  E-value=7e-06  Score=74.41  Aligned_cols=92  Identities=17%  Similarity=0.264  Sum_probs=64.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecCCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAGAR  116 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g~~  116 (350)
                      |||+|||+|.||..++..|+..+. .+|.++|+++++++.    +....    ...+  +++. +.+ ++|+||++.. +
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~-~~v~~~~r~~~~~~~----~~~~~----g~~~--~~~~~~~~-~~D~vi~~v~-~   67 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGG-YRIYIANRGAEKRER----LEKEL----GVET--SATLPELH-SDDVLILAVK-P   67 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCS-CEEEEECSSHHHHHH----HHHHT----CCEE--ESSCCCCC-TTSEEEECSC-H
T ss_pred             CEEEEECchHHHHHHHHHHHHCCC-CeEEEECCCHHHHHH----HHHhc----CCEE--eCCHHHHh-cCCEEEEEeC-c
Confidence            699999999999999999998883 389999999887663    33221    1232  3444 567 9999999963 1


Q ss_pred             cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch
Q 018760          117 QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI  159 (350)
Q Consensus       117 ~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~  159 (350)
                                     ..++++.+.+.. . +.+++.++|....
T Consensus        68 ---------------~~~~~v~~~l~~-~-~~ivv~~~~g~~~   93 (263)
T 1yqg_A           68 ---------------QDMEAACKNIRT-N-GALVLSVAAGLSV   93 (263)
T ss_dssp             ---------------HHHHHHHTTCCC-T-TCEEEECCTTCCH
T ss_pred             ---------------hhHHHHHHHhcc-C-CCEEEEecCCCCH
Confidence                           223445555555 3 6777777777764

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.26  E-value=8.5e-07  Score=84.72  Aligned_cols=72  Identities=19%  Similarity=0.288  Sum_probs=51.3

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCC----CceEEEcCCc-cccCCCCEEEEec
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP----RTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~----~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      ||+|||+|.||.+++..|+..|.  +|+++|+++++++.....-.... +.+    ...+..+++. ++++++|+||+++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~--~V~~~~r~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~aDvVilav   93 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCR--EVCVWHMNEEEVRLVNEKRENVL-FLKGVQLASNITFTSDVEKAYNGAEIILFVI   93 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEE--EEEEECSCHHHHHHHHHHTBCTT-TSTTCBCCTTEEEESCHHHHHTTCSSEEECC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccc-cccccccccceeeeCCHHHHHcCCCEEEECC
Confidence            99999999999999999998885  89999999877664221110000 100    1235555666 5688999999996

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=98.25  E-value=3.8e-06  Score=78.41  Aligned_cols=92  Identities=18%  Similarity=0.174  Sum_probs=63.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      +.+||+|||+|.||..++..|+..|.  +|+++|+++++++.    +....       +..+++. +++++||+||++..
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~----~~~~g-------~~~~~~~~e~~~~aDvVi~~vp   74 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGK--RVAIWNRSPGKAAA----LVAAG-------AHLCESVKAALSASPATIFVLL   74 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTC--CEEEECSSHHHHHH----HHHHT-------CEECSSHHHHHHHSSEEEECCS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH----HHHCC-------CeecCCHHHHHhcCCEEEEEeC
Confidence            45799999999999999999999986  89999999987764    22211       1224455 56889999999964


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHh--hhhccCCCeEEEEEcC
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIP--PLVKYSPDCILLIVAN  155 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~--~i~~~~p~a~viv~tN  155 (350)
                      .+               ..++++..  .+....|+.++|..|+
T Consensus        75 ~~---------------~~~~~v~~~~~l~~~~~g~ivid~st  102 (306)
T 3l6d_A           75 DN---------------HATHEVLGMPGVARALAHRTIVDYTT  102 (306)
T ss_dssp             SH---------------HHHHHHHTSTTHHHHTTTCEEEECCC
T ss_pred             CH---------------HHHHHHhcccchhhccCCCEEEECCC
Confidence            22               11222222  3444467777777764

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=98.24  E-value=1.3e-06  Score=81.80  Aligned_cols=114  Identities=11%  Similarity=0.139  Sum_probs=72.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHH-hh--cC-CCc---eEEEcCCccccCCCCEE
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHA-AA--FL-PRT---KILASVDYAVTAGSDLC  109 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~-~~--~~-~~~---~v~~t~~~~al~~aDiV  109 (350)
                      +|||+|||+|.+|..++..|...|.  +|.++++++  .+    .++.. ..  .. ...   .+..+++.+++.++|+|
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g~--~V~~~~r~~--~~----~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~D~v   73 (312)
T 3hn2_A            2 SLRIAIVGAGALGLYYGALLQRSGE--DVHFLLRRD--YE----AIAGNGLKVFSINGDFTLPHVKGYRAPEEIGPMDLV   73 (312)
T ss_dssp             --CEEEECCSTTHHHHHHHHHHTSC--CEEEECSTT--HH----HHHHTCEEEEETTCCEEESCCCEESCHHHHCCCSEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC--eEEEEEcCc--HH----HHHhCCCEEEcCCCeEEEeeceeecCHHHcCCCCEE
Confidence            3799999999999999999999885  899999975  23    23321 10  00 111   12234566668899999


Q ss_pred             EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHHHHHHHHhCCCCCcEee
Q 018760          110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILTYVAWKLSGLPSNRVIG  177 (350)
Q Consensus       110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG  177 (350)
                      |+++.    +...            +++++.++.+ .|+..||.+.|.++....+ .+.  +|..+|++
T Consensus        74 ilavk----~~~~------------~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l-~~~--~~~~~v~~  123 (312)
T 3hn2_A           74 LVGLK----TFAN------------SRYEELIRPLVEEGTQILTLQNGLGNEEAL-ATL--FGAERIIG  123 (312)
T ss_dssp             EECCC----GGGG------------GGHHHHHGGGCCTTCEEEECCSSSSHHHHH-HHH--TCGGGEEE
T ss_pred             EEecC----CCCc------------HHHHHHHHhhcCCCCEEEEecCCCCcHHHH-HHH--CCCCcEEE
Confidence            99963    2111            1233344443 5788888999998765433 333  45557664

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=98.24  E-value=1.6e-06  Score=80.64  Aligned_cols=105  Identities=15%  Similarity=0.220  Sum_probs=65.1

Q ss_pred             CCCCCCCeEEEEcCChhHHHHHHHHHhc-----C-CCCeEEEEeCCccchHHHHHHHHH-H-hhc-CC-----CceEEEc
Q 018760           32 SPTKRHTKISVIGTGNVGMAIAQTILTQ-----D-FVEELALVDAKADKLRGEMLDLQH-A-AAF-LP-----RTKILAS   97 (350)
Q Consensus        32 ~~~~~~~KI~IIGAG~vG~~~a~~l~~~-----~-~~~ev~L~D~~~~~l~~~~~dl~~-~-~~~-~~-----~~~v~~t   97 (350)
                      +|..++|||+|||+|.||..++..|+..     + .  +|+++|+ +++++.    +.. . ... ..     ..++..+
T Consensus         3 ~m~~~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~--~V~~~~r-~~~~~~----l~~~~g~~~~~~~~~~~~~~~~~~   75 (317)
T 2qyt_A            3 AMNQQPIKIAVFGLGGVGGYYGAMLALRAAATDGLL--EVSWIAR-GAHLEA----IRAAGGLRVVTPSRDFLARPTCVT   75 (317)
T ss_dssp             ----CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSE--EEEEECC-HHHHHH----HHHHTSEEEECSSCEEEECCSEEE
T ss_pred             CCCCCCCEEEEECcCHHHHHHHHHHHhCccccCCCC--CEEEEEc-HHHHHH----HHhcCCeEEEeCCCCeEEecceEe
Confidence            4555668999999999999999999987     6 4  8999998 655543    333 1 100 00     0112333


Q ss_pred             CCccccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcch
Q 018760           98 VDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDI  159 (350)
Q Consensus        98 ~~~~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~  159 (350)
                      ++.++++++|+||++.....                +.++++.+..+ .|+.++|.++|..+.
T Consensus        76 ~~~~~~~~~D~vil~vk~~~----------------~~~v~~~i~~~l~~~~~iv~~~nG~~~  122 (317)
T 2qyt_A           76 DNPAEVGTVDYILFCTKDYD----------------MERGVAEIRPMIGQNTKILPLLNGADI  122 (317)
T ss_dssp             SCHHHHCCEEEEEECCSSSC----------------HHHHHHHHGGGEEEEEEEEECSCSSSH
T ss_pred             cCccccCCCCEEEEecCccc----------------HHHHHHHHHhhcCCCCEEEEccCCCCc
Confidence            45566789999999974321                12223333333 456778888887765

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=98.23  E-value=1.4e-06  Score=81.45  Aligned_cols=115  Identities=16%  Similarity=0.224  Sum_probs=72.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHH-hhc-CCCc-eEEEc-CCccccCCCCEEEEe
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHA-AAF-LPRT-KILAS-VDYAVTAGSDLCIVT  112 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~-~~~-~~~~-~v~~t-~~~~al~~aDiVIi~  112 (350)
                      +|||+|||+|.||..++..|. .+.  +|.++++++++++.    +... ... .... ..... .+.++..++|+||++
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~g~--~V~~~~r~~~~~~~----l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vila   74 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-LYH--DVTVVTRRQEQAAA----IQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVT   74 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTS--EEEEECSCHHHHHH----HHHHCEEEEETTEEEEECCEEESSCCSCCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHh-cCC--ceEEEECCHHHHHH----HHhCCceEecCCCeecccccccccccCCCCEEEEE
Confidence            479999999999999999999 774  99999999876653    3221 100 0011 11100 012457889999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                      +.    +..            +.++++.+..+.++. ||.+.|-++..- .+.++  +|.++|++-
T Consensus        75 vK----~~~------------~~~~l~~l~~~~~~~-ivs~~nGi~~~e-~l~~~--~~~~~vl~g  120 (307)
T 3ego_A           75 VK----QHQ------------LQSVFSSLERIGKTN-ILFLQNGMGHIH-DLKDW--HVGHSIYVG  120 (307)
T ss_dssp             CC----GGG------------HHHHHHHTTSSCCCE-EEECCSSSHHHH-HHHTC--CCSCEEEEE
T ss_pred             eC----HHH------------HHHHHHHhhcCCCCe-EEEecCCccHHH-HHHHh--CCCCcEEEE
Confidence            62    211            233445555555667 888899988642 33332  566777643

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.22  E-value=1.4e-06  Score=78.95  Aligned_cols=90  Identities=14%  Similarity=0.311  Sum_probs=64.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCC--CeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFV--EELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~--~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      +|||+|||+|.||..++..|+..+..  .+|+++|+++++           .    ...  .+++. +++++||+||+++
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-----------~----g~~--~~~~~~~~~~~~D~vi~~v   66 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-----------T----TLN--YMSSNEELARHCDIIVCAV   66 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-----------S----SSE--ECSCHHHHHHHCSEEEECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-----------C----ceE--EeCCHHHHHhcCCEEEEEe
Confidence            47999999999999999999988732  389999999876           1    122  23455 5688999999997


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI  159 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~  159 (350)
                      ...                .++++.+.+..+.++..++..+|.++.
T Consensus        67 ~~~----------------~~~~v~~~l~~~l~~~~vv~~~~gi~~   96 (262)
T 2rcy_A           67 KPD----------------IAGSVLNNIKPYLSSKLLISICGGLNI   96 (262)
T ss_dssp             CTT----------------THHHHHHHSGGGCTTCEEEECCSSCCH
T ss_pred             CHH----------------HHHHHHHHHHHhcCCCEEEEECCCCCH
Confidence            411                123344445554467778888888776

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=98.21  E-value=4.1e-06  Score=83.20  Aligned_cols=103  Identities=15%  Similarity=0.171  Sum_probs=68.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCC---CCEE
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAG---SDLC  109 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~---aDiV  109 (350)
                      ...++||+|||+|.||.+++..|+..|.  +|+++|+++++++.    +.....   ...+..+++. +.+++   +|+|
T Consensus        12 ~~~~~~IgvIGlG~MG~~lA~~La~~G~--~V~v~~r~~~~~~~----l~~~~~---~~gi~~~~s~~e~v~~l~~aDvV   82 (480)
T 2zyd_A           12 HMSKQQIGVVGMAVMGRNLALNIESRGY--TVSIFNRSREKTEE----VIAENP---GKKLVPYYTVKEFVESLETPRRI   82 (480)
T ss_dssp             ---CBSEEEECCSHHHHHHHHHHHTTTC--CEEEECSSHHHHHH----HHHHST---TSCEEECSSHHHHHHTBCSSCEE
T ss_pred             ccCCCeEEEEccHHHHHHHHHHHHhCCC--eEEEEeCCHHHHHH----HHhhCC---CCCeEEeCCHHHHHhCCCCCCEE
Confidence            3445789999999999999999999986  89999999887763    332210   1135555666 44555   9999


Q ss_pred             EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchH
Q 018760          110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDIL  160 (350)
Q Consensus       110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~  160 (350)
                      |+++..+    .           .++++++.+..+ .|+.+||..+|.....
T Consensus        83 il~Vp~~----~-----------~v~~vl~~l~~~l~~g~iIId~s~g~~~~  119 (480)
T 2zyd_A           83 LLMVKAG----A-----------GTDAAIDSLKPYLDKGDIIIDGGNTFFQD  119 (480)
T ss_dssp             EECSCSS----S-----------HHHHHHHHHGGGCCTTCEEEECSCCCHHH
T ss_pred             EEECCCH----H-----------HHHHHHHHHHhhcCCCCEEEECCCCCHHH
Confidence            9997432    1           122233344443 4678888899876543

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=98.21  E-value=7.1e-06  Score=76.61  Aligned_cols=94  Identities=14%  Similarity=0.169  Sum_probs=65.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ..|||+|||+|.||..++..|...+.  +|.++|+++++++.    +...     ...  .+.+. ++++++|+||++..
T Consensus        29 ~~~~I~iIG~G~mG~~~a~~l~~~g~--~V~~~~~~~~~~~~----~~~~-----g~~--~~~~~~~~~~~~DvVi~av~   95 (316)
T 2uyy_A           29 TDKKIGFLGLGLMGSGIVSNLLKMGH--TVTVWNRTAEKCDL----FIQE-----GAR--LGRTPAEVVSTCDITFACVS   95 (316)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTC--CEEEECSSGGGGHH----HHHT-----TCE--ECSCHHHHHHHCSEEEECCS
T ss_pred             CCCeEEEEcccHHHHHHHHHHHhCCC--EEEEEeCCHHHHHH----HHHc-----CCE--EcCCHHHHHhcCCEEEEeCC
Confidence            35799999999999999999998885  89999999987763    2221     112  23455 56889999999964


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhh----hccCCCeEEEEEcCCc
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPL----VKYSPDCILLIVANPV  157 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i----~~~~p~a~viv~tNP~  157 (350)
                      .+               ..++++...+    ....++.++|.++|-.
T Consensus        96 ~~---------------~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~  127 (316)
T 2uyy_A           96 DP---------------KAAKDLVLGPSGVLQGIRPGKCYVDMSTVD  127 (316)
T ss_dssp             SH---------------HHHHHHHHSTTCGGGGCCTTCEEEECSCCC
T ss_pred             CH---------------HHHHHHHcCchhHhhcCCCCCEEEECCCCC
Confidence            22               1223333332    2346778888888754

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.21  E-value=2e-06  Score=71.06  Aligned_cols=94  Identities=16%  Similarity=0.260  Sum_probs=66.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAGA  115 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g~  115 (350)
                      .+||+|||+|.+|..++..|...+.  +|+++|+++++++..+..+.        ..+....+. +.++++|+||.+.+.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~--~v~v~~r~~~~~~~~a~~~~--------~~~~~~~~~~~~~~~~Divi~at~~   90 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQY--KVTVAGRNIDHVRAFAEKYE--------YEYVLINDIDSLIKNNDVIITATSS   90 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTC--EEEEEESCHHHHHHHHHHHT--------CEEEECSCHHHHHHTCSEEEECSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC--EEEEEcCCHHHHHHHHHHhC--------CceEeecCHHHHhcCCCEEEEeCCC
Confidence            5699999999999999998888774  59999999987764332221        234334555 568999999999765


Q ss_pred             CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch
Q 018760          116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI  159 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~  159 (350)
                      +. +-..                  .....|..+++.+++|.++
T Consensus        91 ~~-~~~~------------------~~~l~~g~~vid~~~p~~~  115 (144)
T 3oj0_A           91 KT-PIVE------------------ERSLMPGKLFIDLGNPPNI  115 (144)
T ss_dssp             SS-CSBC------------------GGGCCTTCEEEECCSSCSB
T ss_pred             CC-cEee------------------HHHcCCCCEEEEccCCccC
Confidence            42 1000                  1223567889999999765

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.20  E-value=2.3e-06  Score=80.31  Aligned_cols=114  Identities=18%  Similarity=0.225  Sum_probs=70.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHH-h---h-cCCCce---EEEcCCcccc-CCCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHA-A---A-FLPRTK---ILASVDYAVT-AGSD  107 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~-~---~-~~~~~~---v~~t~~~~al-~~aD  107 (350)
                      +|||+|||+|.+|..++..|...|.  +|.++|+++  .+    .+... .   . .....+   +..+++.+++ +++|
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g~--~V~~~~r~~--~~----~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~D   73 (320)
T 3i83_A            2 SLNILVIGTGAIGSFYGALLAKTGH--CVSVVSRSD--YE----TVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPD   73 (320)
T ss_dssp             -CEEEEESCCHHHHHHHHHHHHTTC--EEEEECSTT--HH----HHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC--eEEEEeCCh--HH----HHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCC
Confidence            3799999999999999999999885  999999976  23    23321 0   0 111111   2234566554 4999


Q ss_pred             EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHHHHHHHHhCCCCCcEee
Q 018760          108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILTYVAWKLSGLPSNRVIG  177 (350)
Q Consensus       108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG  177 (350)
                      +||+++....    .        .++    ++.+..+ .++..||.++|.++... .+.+.  +|.++|++
T Consensus        74 lVilavK~~~----~--------~~~----l~~l~~~l~~~t~Iv~~~nGi~~~~-~l~~~--~~~~~vl~  125 (320)
T 3i83_A           74 CTLLCIKVVE----G--------ADR----VGLLRDAVAPDTGIVLISNGIDIEP-EVAAA--FPDNEVIS  125 (320)
T ss_dssp             EEEECCCCCT----T--------CCH----HHHHTTSCCTTCEEEEECSSSSCSH-HHHHH--STTSCEEE
T ss_pred             EEEEecCCCC----h--------HHH----HHHHHhhcCCCCEEEEeCCCCChHH-HHHHH--CCCCcEEE
Confidence            9999974321    1        112    2333433 56788889999887543 33333  44456663

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.20  E-value=5.9e-06  Score=76.14  Aligned_cols=92  Identities=16%  Similarity=0.324  Sum_probs=64.1

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGA  115 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~  115 (350)
                      +|||+|||+ |.||..++..|...+.  +|+++|+++++++.    +.. ..    .++  ++..+.+++||+||+++. 
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~--~V~~~~r~~~~~~~----~~~-~g----~~~--~~~~~~~~~aDvVi~av~-   76 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAH--HLAAIEIAPEGRDR----LQG-MG----IPL--TDGDGWIDEADVVVLALP-   76 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSS--EEEEECCSHHHHHH----HHH-TT----CCC--CCSSGGGGTCSEEEECSC-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCHHHHHH----HHh-cC----CCc--CCHHHHhcCCCEEEEcCC-
Confidence            479999999 9999999999999885  99999999876653    222 11    111  223467899999999963 


Q ss_pred             CcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCc
Q 018760          116 RQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPV  157 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~  157 (350)
                         +            ..++++.+.+..+ .|+.+++..|+..
T Consensus        77 ---~------------~~~~~v~~~l~~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           77 ---D------------NIIEKVAEDIVPRVRPGTIVLILDAAA  104 (286)
T ss_dssp             ---H------------HHHHHHHHHHGGGSCTTCEEEESCSHH
T ss_pred             ---c------------hHHHHHHHHHHHhCCCCCEEEECCCCc
Confidence               1            1134445555554 4677777766654

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=98.18  E-value=4.4e-06  Score=77.19  Aligned_cols=94  Identities=16%  Similarity=0.300  Sum_probs=64.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAGA  115 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g~  115 (350)
                      +|||+|||+|.||..++..|...+.  +|.++|+++++++.    +...     .  +..+++. +.++++|+||++...
T Consensus         5 ~m~i~iiG~G~~G~~~a~~l~~~g~--~V~~~~~~~~~~~~----~~~~-----g--~~~~~~~~~~~~~~D~vi~~v~~   71 (299)
T 1vpd_A            5 TMKVGFIGLGIMGKPMSKNLLKAGY--SLVVSDRNPEAIAD----VIAA-----G--AETASTAKAIAEQCDVIITMLPN   71 (299)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHHTTC--EEEEECSCHHHHHH----HHHT-----T--CEECSSHHHHHHHCSEEEECCSS
T ss_pred             cceEEEECchHHHHHHHHHHHhCCC--EEEEEeCCHHHHHH----HHHC-----C--CeecCCHHHHHhCCCEEEEECCC
Confidence            3799999999999999999998885  89999999876653    2221     1  2234455 568899999999743


Q ss_pred             CcCccccHHHHHHhhHHHHHHHH---hhhhc-cCCCeEEEEEcCCcc
Q 018760          116 RQIAGESRLNLLQRNLSLFKAII---PPLVK-YSPDCILLIVANPVD  158 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~---~~i~~-~~p~a~viv~tNP~~  158 (350)
                      +.               .++++.   +.+.+ ..|+.+++..+|-..
T Consensus        72 ~~---------------~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~  103 (299)
T 1vpd_A           72 SP---------------HVKEVALGENGIIEGAKPGTVLIDMSSIAP  103 (299)
T ss_dssp             HH---------------HHHHHHHSTTCHHHHCCTTCEEEECSCCCH
T ss_pred             HH---------------HHHHHHhCcchHhhcCCCCCEEEECCCCCH
Confidence            21               122222   33333 356778888877543

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=98.18  E-value=1.6e-05  Score=72.79  Aligned_cols=96  Identities=13%  Similarity=0.172  Sum_probs=62.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccC-CCCEEEEecCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTA-GSDLCIVTAGA  115 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~-~aDiVIi~~g~  115 (350)
                      +||+|||+|.||..++..|...+...+|+++|+++++++.    +... .  ....  .+++. +.++ +||+||+++..
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~----~~~~-g--~~~~--~~~~~~~~~~~~aDvVilavp~   72 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISK----AVDL-G--IIDE--GTTSIAKVEDFSPDFVMLSSPV   72 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHH----HHHT-T--SCSE--EESCGGGGGGTCCSEEEECSCH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHH----HHHC-C--Cccc--ccCCHHHHhcCCCCEEEEcCCH
Confidence            6999999999999999999988753489999999876652    2211 1  1111  23455 6688 99999999631


Q ss_pred             CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc
Q 018760          116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV  157 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~  157 (350)
                      .            ....++.++.+.   ..++.++++++|..
T Consensus        73 ~------------~~~~v~~~l~~~---l~~~~iv~~~~~~~   99 (281)
T 2g5c_A           73 R------------TFREIAKKLSYI---LSEDATVTDQGSVK   99 (281)
T ss_dssp             H------------HHHHHHHHHHHH---SCTTCEEEECCSCC
T ss_pred             H------------HHHHHHHHHHhh---CCCCcEEEECCCCc
Confidence            1            012333333322   24677777776643

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=98.16  E-value=1.5e-05  Score=72.85  Aligned_cols=91  Identities=19%  Similarity=0.239  Sum_probs=61.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCCc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQ  117 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~~  117 (350)
                      |||+|||+|.||..++..|...+.  +|+++|+++++++.    +... .  ...++  +++.++++++|+||+++..  
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~--~V~~~~~~~~~~~~----~~~~-g--~~~~~--~~~~~~~~~~D~vi~av~~--   67 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGH--YLIGVSRQQSTCEK----AVER-Q--LVDEA--GQDLSLLQTAKIIFLCTPI--   67 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHH----HHHT-T--SCSEE--ESCGGGGTTCSEEEECSCH--
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHH----HHhC-C--CCccc--cCCHHHhCCCCEEEEECCH--
Confidence            689999999999999999999885  89999999877653    2221 1  11122  3455433999999999631  


Q ss_pred             CccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcC
Q 018760          118 IAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVAN  155 (350)
Q Consensus       118 ~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN  155 (350)
                                    ..+.++++.+..+ .|+.+++.+++
T Consensus        68 --------------~~~~~~~~~l~~~~~~~~~vv~~~~   92 (279)
T 2f1k_A           68 --------------QLILPTLEKLIPHLSPTAIVTDVAS   92 (279)
T ss_dssp             --------------HHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             --------------HHHHHHHHHHHhhCCCCCEEEECCC
Confidence                          1233444455544 56777777755

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.15  E-value=3.8e-06  Score=76.96  Aligned_cols=99  Identities=21%  Similarity=0.190  Sum_probs=66.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCC--CceEEEcCCccccCCCCEEEEecCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP--RTKILASVDYAVTAGSDLCIVTAGA  115 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~--~~~v~~t~~~~al~~aDiVIi~~g~  115 (350)
                      |||+|||+|.||..++..|+..|.  +|+++|+++++++.    +........  ..++.. ++.++++++|+||++...
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~--~V~~~~r~~~~~~~----l~~~~~~~~~~~~~~~~-~~~~~~~~~d~vi~~v~~   73 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGH--EVQGWLRVPQPYCS----VNLVETDGSIFNESLTA-NDPDFLATSDLLLVTLKA   73 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCCSEEE----EEEECTTSCEEEEEEEE-SCHHHHHTCSEEEECSCG
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC--CEEEEEcCccceee----EEEEcCCCceeeeeeee-cCccccCCCCEEEEEecH
Confidence            699999999999999999999885  99999999876653    111000000  012332 345678899999999742


Q ss_pred             CcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcch
Q 018760          116 RQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDI  159 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~  159 (350)
                      ..                +.++.+.+..+ .|+.+++..+|..+.
T Consensus        74 ~~----------------~~~v~~~l~~~l~~~~~vv~~~~g~~~  102 (291)
T 1ks9_A           74 WQ----------------VSDAVKSLASTLPVTTPILLIHNGMGT  102 (291)
T ss_dssp             GG----------------HHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred             Hh----------------HHHHHHHHHhhCCCCCEEEEecCCCCc
Confidence            21                12333444443 567788888998755

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=98.15  E-value=1.2e-05  Score=73.65  Aligned_cols=94  Identities=13%  Similarity=0.115  Sum_probs=63.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCCc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQ  117 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~~  117 (350)
                      |||+|||+|.||..++..|.. +.  +|+++|+++++++..    ....     ..+. + ..+.++++|+||++...+.
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~--~V~~~~~~~~~~~~~----~~~g-----~~~~-~-~~~~~~~~D~vi~~v~~~~   67 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RF--PTLVWNRTFEKALRH----QEEF-----GSEA-V-PLERVAEARVIFTCLPTTR   67 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TS--CEEEECSSTHHHHHH----HHHH-----CCEE-C-CGGGGGGCSEEEECCSSHH
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CC--eEEEEeCCHHHHHHH----HHCC-----Cccc-C-HHHHHhCCCEEEEeCCChH
Confidence            689999999999999999998 75  899999998876632    2211     1122 2 2356889999999974321


Q ss_pred             CccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchH
Q 018760          118 IAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDIL  160 (350)
Q Consensus       118 ~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~  160 (350)
                                     .++++.+.+.+. .++.+++..+|.....
T Consensus        68 ---------------~~~~v~~~l~~~l~~~~~vv~~s~~~~~~   96 (289)
T 2cvz_A           68 ---------------EVYEVAEALYPYLREGTYWVDATSGEPEA   96 (289)
T ss_dssp             ---------------HHHHHHHHHTTTCCTTEEEEECSCCCHHH
T ss_pred             ---------------HHHHHHHHHHhhCCCCCEEEECCCCCHHH
Confidence                           122233444443 5677788888765443

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=98.14  E-value=3e-06  Score=81.72  Aligned_cols=119  Identities=14%  Similarity=0.151  Sum_probs=79.3

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCC------CCeEEEEeCCccch-HHHHHHHHHHh--h-cC----CCceEEEcCCc
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDF------VEELALVDAKADKL-RGEMLDLQHAA--A-FL----PRTKILASVDY  100 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~------~~ev~L~D~~~~~l-~~~~~dl~~~~--~-~~----~~~~v~~t~~~  100 (350)
                      .++.||+|||||+.|+++|..|+.++.      ..+|.|+.++++.. +.....++...  . |+    .+.++.+++|.
T Consensus        32 ~~p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl  111 (391)
T 4fgw_A           32 EKPFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDL  111 (391)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCH
Confidence            356799999999999999999998752      13699998877632 22233344221  1 22    23568888897


Q ss_pred             -cccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCc-------chHHHHHHHHhC
Q 018760          101 -AVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPV-------DILTYVAWKLSG  169 (350)
Q Consensus       101 -~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~-------~~~~~~~~~~sg  169 (350)
                       +++++||+||+++.                ...++++++++..+ .++..+|.++--.       .++..++.+..+
T Consensus       112 ~~al~~ad~ii~avP----------------s~~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~  173 (391)
T 4fgw_A          112 IDSVKDVDIIVFNIP----------------HQFLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELG  173 (391)
T ss_dssp             HHHHTTCSEEEECSC----------------GGGHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHC
T ss_pred             HHHHhcCCEEEEECC----------------hhhhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHHhC
Confidence             67999999999963                23456666677765 4667777775432       356677766654

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=98.13  E-value=1.9e-05  Score=74.04  Aligned_cols=68  Identities=21%  Similarity=0.146  Sum_probs=50.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcC-CCCeEEEEeCCcc---chHHHHHHHHHHhhcCCCceEEEc-CCccccCCCCEEEE
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQD-FVEELALVDAKAD---KLRGEMLDLQHAAAFLPRTKILAS-VDYAVTAGSDLCIV  111 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~-~~~ev~L~D~~~~---~l~~~~~dl~~~~~~~~~~~v~~t-~~~~al~~aDiVIi  111 (350)
                      +|||+|||+|.||.+++..|+..| .  +|+++|++++   +.+.....+...     ..   .+ +..+++++||+||+
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~--~V~~~dr~~~~~~~~~~~~~~~~~~-----g~---~~~s~~e~~~~aDvVi~   93 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAA--RLAAYDLRFNDPAASGALRARAAEL-----GV---EPLDDVAGIACADVVLS   93 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCS--EEEEECGGGGCTTTHHHHHHHHHHT-----TC---EEESSGGGGGGCSEEEE
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCC--eEEEEeCCCccccchHHHHHHHHHC-----CC---CCCCHHHHHhcCCEEEE
Confidence            479999999999999999999998 5  9999999873   333322233221     12   33 34477899999999


Q ss_pred             ecC
Q 018760          112 TAG  114 (350)
Q Consensus       112 ~~g  114 (350)
                      ++.
T Consensus        94 avp   96 (317)
T 4ezb_A           94 LVV   96 (317)
T ss_dssp             CCC
T ss_pred             ecC
Confidence            974

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.12  E-value=5.5e-06  Score=77.71  Aligned_cols=98  Identities=12%  Similarity=0.300  Sum_probs=64.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeC--CccchHHHHHHHHHHhhcC-CC---ceEEEcC--Cc-cccCCCCE
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDA--KADKLRGEMLDLQHAAAFL-PR---TKILASV--DY-AVTAGSDL  108 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~--~~~~l~~~~~dl~~~~~~~-~~---~~v~~t~--~~-~al~~aDi  108 (350)
                      |||+|||+|.||..++..|+..+.  +|+++|+  ++++++.    +....... ..   .++..++  +. ++++++|+
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~   74 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGN--EVRIWGTEFDTEILKS----ISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEV   74 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCC--EEEEECCGGGHHHHHH----HHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC--eEEEEEccCCHHHHHH----HHHhCcCcccCccccceEEecHHhHHHHHhcCCE
Confidence            699999999999999999999885  9999999  8776553    33211000 00   1234444  55 56889999


Q ss_pred             EEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc
Q 018760          109 CIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV  157 (350)
Q Consensus       109 VIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~  157 (350)
                      ||++...+.            ...++.++.+    ..|+.++|.++|..
T Consensus        75 vi~~v~~~~------------~~~v~~~i~~----l~~~~~vv~~~ng~  107 (335)
T 1txg_A           75 VLLGVSTDG------------VLPVMSRILP----YLKDQYIVLISKGL  107 (335)
T ss_dssp             EEECSCGGG------------HHHHHHHHTT----TCCSCEEEECCCSE
T ss_pred             EEEcCChHH------------HHHHHHHHhc----CCCCCEEEEEcCcC
Confidence            999974221            1233333433    34677888888876

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=98.12  E-value=6.7e-06  Score=76.04  Aligned_cols=94  Identities=15%  Similarity=0.261  Sum_probs=63.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ++|||+|||+|.||..++..|...+.  +|+++|+++++++.    +.+.     .  +..+++. +.++++|+||++..
T Consensus         3 ~~~~i~iiG~G~~G~~~a~~l~~~g~--~V~~~~~~~~~~~~----~~~~-----g--~~~~~~~~~~~~~~D~vi~~vp   69 (301)
T 3cky_A            3 KSIKIGFIGLGAMGKPMAINLLKEGV--TVYAFDLMEANVAA----VVAQ-----G--AQACENNQKVAAASDIIFTSLP   69 (301)
T ss_dssp             -CCEEEEECCCTTHHHHHHHHHHTTC--EEEEECSSHHHHHH----HHTT-----T--CEECSSHHHHHHHCSEEEECCS
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCC--eEEEEeCCHHHHHH----HHHC-----C--CeecCCHHHHHhCCCEEEEECC
Confidence            45899999999999999999998885  89999999876653    2221     1  2234455 56789999999964


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHh---hhhc-cCCCeEEEEEcCCc
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIP---PLVK-YSPDCILLIVANPV  157 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~---~i~~-~~p~a~viv~tNP~  157 (350)
                      .+.               .++++..   .+.. ..++.+++..+|-.
T Consensus        70 ~~~---------------~~~~v~~~~~~l~~~l~~~~~vv~~~~~~  101 (301)
T 3cky_A           70 NAG---------------IVETVMNGPGGVLSACKAGTVIVDMSSVS  101 (301)
T ss_dssp             SHH---------------HHHHHHHSTTCHHHHSCTTCEEEECCCCC
T ss_pred             CHH---------------HHHHHHcCcchHhhcCCCCCEEEECCCCC
Confidence            221               1222221   3333 25677788777755

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=98.11  E-value=1.9e-05  Score=78.27  Aligned_cols=101  Identities=14%  Similarity=0.151  Sum_probs=67.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCC---CCEEEEe
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAG---SDLCIVT  112 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~---aDiVIi~  112 (350)
                      ++||+|||+|.||..++..|+..|.  +|.++|+++++++..    .....   ...+..+++. +.+++   +|+||++
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~l----~~~~~---~~gi~~~~s~~e~v~~l~~aDvVila   75 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGY--TVAIYNRTTSKTEEV----FKEHQ---DKNLVFTKTLEEFVGSLEKPRRIMLM   75 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTC--CEEEECSSHHHHHHH----HHHTT---TSCEEECSSHHHHHHTBCSSCEEEEC
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCC--EEEEEcCCHHHHHHH----HHhCc---CCCeEEeCCHHHHHhhccCCCEEEEE
Confidence            3789999999999999999999986  899999998877643    22110   1134555566 34444   9999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHH
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILT  161 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~  161 (350)
                      +..+               ..++++.+.+..+ .|+.+||..+|.....+
T Consensus        76 vp~~---------------~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~  110 (474)
T 2iz1_A           76 VQAG---------------AATDATIKSLLPLLDIGDILIDGGNTHFPDT  110 (474)
T ss_dssp             CCTT---------------HHHHHHHHHHGGGCCTTCEEEECSCCCHHHH
T ss_pred             ccCc---------------hHHHHHHHHHHhhCCCCCEEEECCCCCHHHH
Confidence            7422               1122333444443 46778888888764433

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=98.10  E-value=1.5e-05  Score=79.45  Aligned_cols=103  Identities=13%  Similarity=0.150  Sum_probs=68.3

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHH-HhhcCCCceEEEcCCc-cccCC---CC
Q 018760           33 PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH-AAAFLPRTKILASVDY-AVTAG---SD  107 (350)
Q Consensus        33 ~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~-~~~~~~~~~v~~t~~~-~al~~---aD  107 (350)
                      +.....||+|||+|.||.+++..|+..|.  +|+++|+++++++.    +.. ...   ...+..+++. +.+++   +|
T Consensus         6 ~~~~~~~IgvIGlG~MG~~lA~~La~~G~--~V~v~dr~~~~~~~----l~~~~~~---~~gi~~~~s~~e~v~~l~~aD   76 (497)
T 2p4q_A            6 HHHMSADFGLIGLAVMGQNLILNAADHGF--TVCAYNRTQSKVDH----FLANEAK---GKSIIGATSIEDFISKLKRPR   76 (497)
T ss_dssp             ---CCCSEEEECCSHHHHHHHHHHHHTTC--CEEEECSSSHHHHH----HHHTTTT---TSSEECCSSHHHHHHTSCSSC
T ss_pred             cccCCCCEEEEeeHHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH----HHccccc---CCCeEEeCCHHHHHhcCCCCC
Confidence            34455699999999999999999999996  89999999987763    332 110   1235545565 34555   99


Q ss_pred             EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcch
Q 018760          108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDI  159 (350)
Q Consensus       108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~  159 (350)
                      +||+++..+               ..++++++.+..+ .|+.+||..+|-...
T Consensus        77 vVil~Vp~~---------------~~v~~vl~~l~~~l~~g~iIId~s~~~~~  114 (497)
T 2p4q_A           77 KVMLLVKAG---------------APVDALINQIVPLLEKGDIIIDGGNSHFP  114 (497)
T ss_dssp             EEEECCCSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCCHH
T ss_pred             EEEEEcCCh---------------HHHHHHHHHHHHhCCCCCEEEECCCCChh
Confidence            999997432               1233334445444 467888888876543

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=98.10  E-value=2.6e-06  Score=78.97  Aligned_cols=109  Identities=21%  Similarity=0.317  Sum_probs=71.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcccc-CCCCEEEEecCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVT-AGSDLCIVTAGA  115 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al-~~aDiVIi~~g~  115 (350)
                      +|||+|||+|.+|..++..|...+.  +|.++|++++.++.     ...... ....+.. +..+++ +++|+||+++. 
T Consensus         2 ~mkI~iiGaGa~G~~~a~~L~~~g~--~V~~~~r~~~~~~~-----~~~~g~-~~~~~~~-~~~~~~~~~~D~vilavk-   71 (294)
T 3g17_A            2 SLSVAIIGPGAVGTTIAYELQQSLP--HTTLIGRHAKTITY-----YTVPHA-PAQDIVV-KGYEDVTNTFDVIIIAVK-   71 (294)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHHCT--TCEEEESSCEEEEE-----ESSTTS-CCEEEEE-EEGGGCCSCEEEEEECSC-
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCC--eEEEEEeccCcEEE-----EecCCe-eccceec-CchHhcCCCCCEEEEeCC-
Confidence            3799999999999999999999885  89999999876541     111111 1223332 223555 89999999962 


Q ss_pred             CcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHHHHHHHHhCCCCCcEee
Q 018760          116 RQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILTYVAWKLSGLPSNRVIG  177 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG  177 (350)
                         +.            .+.++++.+..+ .++..||.+.|-++....       +|.+++++
T Consensus        72 ---~~------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~-------~~~~~v~~  112 (294)
T 3g17_A           72 ---TH------------QLDAVIPHLTYLAHEDTLIILAQNGYGQLEH-------IPFKNVCQ  112 (294)
T ss_dssp             ---GG------------GHHHHGGGHHHHEEEEEEEEECCSSCCCGGG-------CCCSCEEE
T ss_pred             ---cc------------CHHHHHHHHHHhhCCCCEEEEeccCcccHhh-------CCCCcEEE
Confidence               21            123344445443 467788899999887533       56667763

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=98.09  E-value=5.1e-06  Score=79.38  Aligned_cols=95  Identities=14%  Similarity=0.229  Sum_probs=63.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCC---CEE
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGS---DLC  109 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~a---DiV  109 (350)
                      +.++|||+|||+|.||..++..|+..|.  +|+++|+++++++.    +...     .  +..+++. +.++++   |+|
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~--~V~v~dr~~~~~~~----l~~~-----g--~~~~~s~~e~~~~a~~~DvV   85 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRLRKGGH--ECVVYDLNVNAVQA----LERE-----G--IAGARSIEEFCAKLVKPRVV   85 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHH----HHTT-----T--CBCCSSHHHHHHHSCSSCEE
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHhCCC--EEEEEeCCHHHHHH----HHHC-----C--CEEeCCHHHHHhcCCCCCEE
Confidence            3345899999999999999999999995  99999999887653    3321     1  2223455 456777   999


Q ss_pred             EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCc
Q 018760          110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPV  157 (350)
Q Consensus       110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~  157 (350)
                      |+++..+                .++++.+.+... .++.+||..||-.
T Consensus        86 i~~vp~~----------------~v~~vl~~l~~~l~~g~iiId~st~~  118 (358)
T 4e21_A           86 WLMVPAA----------------VVDSMLQRMTPLLAANDIVIDGGNSH  118 (358)
T ss_dssp             EECSCGG----------------GHHHHHHHHGGGCCTTCEEEECSSCC
T ss_pred             EEeCCHH----------------HHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence            9996322                122233344443 5778888887643

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=98.07  E-value=1.5e-05  Score=74.48  Aligned_cols=70  Identities=19%  Similarity=0.193  Sum_probs=49.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc--cchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEE
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA--DKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCI  110 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~--~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVI  110 (350)
                      +.++|||+|||+|.||.+++..|+..|. .+|+++|+++  ++.+    .+...     .  +..+++. +++++||+||
T Consensus        21 ~~~~~~I~iIG~G~mG~~~A~~L~~~G~-~~V~~~dr~~~~~~~~----~~~~~-----g--~~~~~~~~e~~~~aDvVi   88 (312)
T 3qsg_A           21 QSNAMKLGFIGFGEAASAIASGLRQAGA-IDMAAYDAASAESWRP----RAEEL-----G--VSCKASVAEVAGECDVIF   88 (312)
T ss_dssp             ----CEEEEECCSHHHHHHHHHHHHHSC-CEEEEECSSCHHHHHH----HHHHT-----T--CEECSCHHHHHHHCSEEE
T ss_pred             cCCCCEEEEECccHHHHHHHHHHHHCCC-CeEEEEcCCCCHHHHH----HHHHC-----C--CEEeCCHHHHHhcCCEEE
Confidence            3456899999999999999999999884 4899999973  4433    22221     1  2234455 5689999999


Q ss_pred             EecCC
Q 018760          111 VTAGA  115 (350)
Q Consensus       111 i~~g~  115 (350)
                      +++..
T Consensus        89 ~~vp~   93 (312)
T 3qsg_A           89 SLVTA   93 (312)
T ss_dssp             ECSCT
T ss_pred             EecCc
Confidence            99743

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=98.05  E-value=8.2e-06  Score=75.18  Aligned_cols=92  Identities=13%  Similarity=0.112  Sum_probs=62.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAGA  115 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g~  115 (350)
                      +|||+|||+|.||..++..|...+.  +|+++| ++++++.    +...     .  +..+++. +.++++|+||++...
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~g~--~V~~~~-~~~~~~~----~~~~-----g--~~~~~~~~~~~~~~D~vi~~vp~   68 (295)
T 1yb4_A            3 AMKLGFIGLGIMGSPMAINLARAGH--QLHVTT-IGPVADE----LLSL-----G--AVNVETARQVTEFADIIFIMVPD   68 (295)
T ss_dssp             -CEEEECCCSTTHHHHHHHHHHTTC--EEEECC-SSCCCHH----HHTT-----T--CBCCSSHHHHHHTCSEEEECCSS
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCC--EEEEEc-CHHHHHH----HHHc-----C--CcccCCHHHHHhcCCEEEEECCC
Confidence            4799999999999999999998885  899999 9887763    2221     1  1123455 568899999999642


Q ss_pred             CcCccccHHHHHHhhHHHHHHHHh---hhhcc-CCCeEEEEEcCCc
Q 018760          116 RQIAGESRLNLLQRNLSLFKAIIP---PLVKY-SPDCILLIVANPV  157 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~~---~i~~~-~p~a~viv~tNP~  157 (350)
                      +.               .++++..   .+.+. .|+.+++..+|..
T Consensus        69 ~~---------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~   99 (295)
T 1yb4_A           69 TP---------------QVEDVLFGEHGCAKTSLQGKTIVDMSSIS   99 (295)
T ss_dssp             HH---------------HHHHHHHSTTSSTTSCCTTEEEEECSCCC
T ss_pred             HH---------------HHHHHHhCchhHhhcCCCCCEEEECCCCC
Confidence            21               1233333   44443 4677777777753

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=98.03  E-value=1.2e-05  Score=79.70  Aligned_cols=103  Identities=20%  Similarity=0.156  Sum_probs=66.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccC---CCCEEEEec
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTA---GSDLCIVTA  113 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~---~aDiVIi~~  113 (350)
                      |||+|||+|.||..++..|+..|.  +|.++|+++++++......  ... ....++..+++.+ .++   ++|+||+++
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~--g~~-~~~~~i~~~~~~~e~v~~l~~aDvVilaV   76 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGF--KVAVFNRTYSKSEEFMKAN--ASA-PFAGNLKAFETMEAFAASLKKPRKALILV   76 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHT--TTS-TTGGGEEECSCHHHHHHHBCSSCEEEECC
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhc--CCC-CCCCCeEEECCHHHHHhcccCCCEEEEec
Confidence            699999999999999999999986  8999999988776432211  100 0012355566663 344   599999997


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchH
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDIL  160 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~  160 (350)
                      ..+.               .++++++.+..+ .|+.+||..+|.....
T Consensus        77 p~~~---------------~v~~vl~~l~~~l~~g~iIId~sng~~~~  109 (478)
T 1pgj_A           77 QAGA---------------ATDSTIEQLKKVFEKGDILVDTGNAHFKD  109 (478)
T ss_dssp             CCSH---------------HHHHHHHHHHHHCCTTCEEEECCCCCHHH
T ss_pred             CChH---------------HHHHHHHHHHhhCCCCCEEEECCCCChHH
Confidence            4321               122223333333 4677888888876443

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.02  E-value=2e-05  Score=74.55  Aligned_cols=72  Identities=21%  Similarity=0.310  Sum_probs=51.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhc---CC--C--ceE-EEcCCc-cccCCCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF---LP--R--TKI-LASVDY-AVTAGSD  107 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~---~~--~--~~v-~~t~~~-~al~~aD  107 (350)
                      +|||+|||+|.||..++..|...+.  +|+++|+++++++.    +......   ..  .  .++ ..+++. ++++++|
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   77 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQ--SVLAWDIDAQRIKE----IQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDAD   77 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHH----HHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCC--EEEEEeCCHHHHHH----HHhcCCeEEeccccccccccceecCCHHHHHhcCC
Confidence            4799999999999999999999885  89999999887663    3222110   00  0  111 234566 4588999


Q ss_pred             EEEEecC
Q 018760          108 LCIVTAG  114 (350)
Q Consensus       108 iVIi~~g  114 (350)
                      +||+++.
T Consensus        78 ~vi~~v~   84 (359)
T 1bg6_A           78 VILIVVP   84 (359)
T ss_dssp             EEEECSC
T ss_pred             EEEEeCC
Confidence            9999974

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=98.02  E-value=2.2e-05  Score=77.85  Aligned_cols=99  Identities=16%  Similarity=0.212  Sum_probs=66.5

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-c---cCCCCEEEE
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-V---TAGSDLCIV  111 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-a---l~~aDiVIi  111 (350)
                      .+|||+|||+|.||.+++..|+..|.  +|+++|+++++++.    +.....  ...++..+.+.+ .   ++++|+||+
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~----l~~~g~--~g~~i~~~~s~~e~v~~l~~aDvVil   74 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGF--VVCAFNRTVSKVDD----FLANEA--KGTKVVGAQSLKEMVSKLKKPRRIIL   74 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTC--CEEEECSSTHHHHH----HHHTTT--TTSSCEECSSHHHHHHTBCSSCEEEE
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH----HHhccc--CCCceeccCCHHHHHhhccCCCEEEE
Confidence            35799999999999999999999996  89999999987763    332210  122444455553 3   346999999


Q ss_pred             ecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCc
Q 018760          112 TAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPV  157 (350)
Q Consensus       112 ~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~  157 (350)
                      ++..+               +.++++.+.+..+ .|+.++|..+|-.
T Consensus        75 ~Vp~~---------------~~v~~vl~~l~~~L~~g~iIId~st~~  106 (484)
T 4gwg_A           75 LVKAG---------------QAVDDFIEKLVPLLDTGDIIIDGGNSE  106 (484)
T ss_dssp             CSCSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             ecCCh---------------HHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence            97432               1122333444443 5778888888754

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=98.00  E-value=2.2e-05  Score=73.21  Aligned_cols=91  Identities=21%  Similarity=0.351  Sum_probs=62.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAGA  115 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g~  115 (350)
                      ++||++||.|.||.++|..|+..|+  +|+.+|+++++++.    +....     .+  ...+. +.+++||+||.+.. 
T Consensus         3 M~kIgfIGlG~MG~~mA~~L~~~G~--~v~v~dr~~~~~~~----l~~~G-----a~--~a~s~~e~~~~~dvv~~~l~-   68 (300)
T 3obb_A            3 MKQIAFIGLGHMGAPMATNLLKAGY--LLNVFDLVQSAVDG----LVAAG-----AS--AARSARDAVQGADVVISMLP-   68 (300)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTC--EEEEECSSHHHHHH----HHHTT-----CE--ECSSHHHHHTTCSEEEECCS-
T ss_pred             cCEEEEeeehHHHHHHHHHHHhCCC--eEEEEcCCHHHHHH----HHHcC-----CE--EcCCHHHHHhcCCceeecCC-
Confidence            4589999999999999999999996  99999999887663    43321     12  23455 67899999999963 


Q ss_pred             CcCccccHHHHHHhhHHHHHHHHhh---h-hccCCCeEEEEEcC
Q 018760          116 RQIAGESRLNLLQRNLSLFKAIIPP---L-VKYSPDCILLIVAN  155 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~~~---i-~~~~p~a~viv~tN  155 (350)
                                    +.+.++++...   + ....|..++|..|+
T Consensus        69 --------------~~~~v~~V~~~~~g~~~~~~~g~iiId~sT   98 (300)
T 3obb_A           69 --------------ASQHVEGLYLDDDGLLAHIAPGTLVLECST   98 (300)
T ss_dssp             --------------CHHHHHHHHHSSSSSTTSCCC-CEEEECSC
T ss_pred             --------------chHHHHHHHhchhhhhhcCCCCCEEEECCC
Confidence                          23444554433   2 22356666666653

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.99  E-value=3.3e-06  Score=74.74  Aligned_cols=93  Identities=14%  Similarity=0.274  Sum_probs=62.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ++|||+|||+|.+|..++..|...+.  +|+++|+++++++.    +...     ..++  + +. ++++++|+||++..
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~--~V~~~~r~~~~~~~----~~~~-----g~~~--~-~~~~~~~~~DvVi~av~   92 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGF--KVVVGSRNPKRTAR----LFPS-----AAQV--T-FQEEAVSSPEVIFVAVF   92 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTC--CEEEEESSHHHHHH----HSBT-----TSEE--E-EHHHHTTSCSEEEECSC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH----HHHc-----CCce--e-cHHHHHhCCCEEEECCC
Confidence            45799999999999999999998885  89999999876542    2211     2233  2 34 56899999999974


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI  159 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~  159 (350)
                      ..    ..            +++.+ +....++.+++.++|+...
T Consensus        93 ~~----~~------------~~v~~-l~~~~~~~~vv~~s~g~~~  120 (215)
T 2vns_A           93 RE----HY------------SSLCS-LSDQLAGKILVDVSNPTEQ  120 (215)
T ss_dssp             GG----GS------------GGGGG-GHHHHTTCEEEECCCCCHH
T ss_pred             hH----HH------------HHHHH-HHHhcCCCEEEEeCCCccc
Confidence            21    10            11111 2222367889999998764

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.97  E-value=9.1e-05  Score=59.73  Aligned_cols=68  Identities=19%  Similarity=0.358  Sum_probs=47.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----cccCCCCEE
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----AVTAGSDLC  109 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----~al~~aDiV  109 (350)
                      .|||+|+|+|.+|..++..|...+.  +|+++|+++++++.    +....    ...+...  ++.     ..++++|+|
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~--~v~~~d~~~~~~~~----~~~~~----~~~~~~~d~~~~~~l~~~~~~~~d~v   73 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGH--DIVLIDIDKDICKK----ASAEI----DALVINGDCTKIKTLEDAGIEDADMY   73 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHH----HHHHC----SSEEEESCTTSHHHHHHTTTTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHH----HHHhc----CcEEEEcCCCCHHHHHHcCcccCCEE
Confidence            4799999999999999999999884  89999999876543    33211    1122211  121     226899999


Q ss_pred             EEecC
Q 018760          110 IVTAG  114 (350)
Q Consensus       110 Ii~~g  114 (350)
                      |++.+
T Consensus        74 i~~~~   78 (140)
T 1lss_A           74 IAVTG   78 (140)
T ss_dssp             EECCS
T ss_pred             EEeeC
Confidence            99964

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.96  E-value=3.2e-05  Score=76.77  Aligned_cols=99  Identities=17%  Similarity=0.176  Sum_probs=65.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-c---CCCCEEEEec
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-T---AGSDLCIVTA  113 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l---~~aDiVIi~~  113 (350)
                      |||+|||+|.||..++..|+..|.  +|.++|+++++++.    +.... . ....+..+++.++ +   +++|+||+++
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~--~V~v~dr~~~~~~~----l~~~~-~-~g~gi~~~~~~~e~v~~l~~aDvVilaV   74 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGF--VVCAFNRTVSKVDD----FLANE-A-KGTKVLGAHSLEEMVSKLKKPRRIILLV   74 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC--CEEEECSSTHHHHH----HHHTT-T-TTSSCEECSSHHHHHHHBCSSCEEEECS
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCC--eEEEEeCCHHHHHH----HHhcc-c-cCCCeEEeCCHHHHHhhccCCCEEEEeC
Confidence            689999999999999999999986  89999999987764    32200 0 0112444556643 3   5999999997


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcch
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDI  159 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~  159 (350)
                      ..+.               .++++++.+..+ .|+.+||..+|....
T Consensus        75 p~~~---------------~v~~vl~~l~~~l~~g~iII~~s~~~~~  106 (482)
T 2pgd_A           75 KAGQ---------------AVDNFIEKLVPLLDIGDIIIDGGNSEYR  106 (482)
T ss_dssp             CTTH---------------HHHHHHHHHHHHCCTTCEEEECSCCCHH
T ss_pred             CChH---------------HHHHHHHHHHhhcCCCCEEEECCCCCHH
Confidence            4321               122223333333 467778888876543

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.96  E-value=3.1e-05  Score=71.90  Aligned_cols=53  Identities=23%  Similarity=0.402  Sum_probs=43.7

Q ss_pred             CCeEEEEc-CChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecC
Q 018760           37 HTKISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAG  114 (350)
Q Consensus        37 ~~KI~IIG-AG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g  114 (350)
                      ++||+||| +|.||..++..|...|.  +|+++|++++.                       +..+++++||+||+++.
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~--~V~~~~~~~~~-----------------------~~~~~~~~aDvVilavp   74 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGY--PISILDREDWA-----------------------VAESILANADVVIVSVP   74 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTC--CEEEECTTCGG-----------------------GHHHHHTTCSEEEECSC
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCC--eEEEEECCccc-----------------------CHHHHhcCCCEEEEeCC
Confidence            35899999 99999999999999886  89999988751                       11256789999999973

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.95  E-value=9.4e-06  Score=73.48  Aligned_cols=66  Identities=20%  Similarity=0.301  Sum_probs=49.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      +|||+|||+|.||..++..|...+  .+|.++|+++++++.    +.....    ..  .+++. +.++++|+||++..
T Consensus         3 ~m~i~iiG~G~mG~~~a~~l~~~g--~~v~~~~~~~~~~~~----~~~~~g----~~--~~~~~~~~~~~~D~Vi~~v~   69 (259)
T 2ahr_A            3 AMKIGIIGVGKMASAIIKGLKQTP--HELIISGSSLERSKE----IAEQLA----LP--YAMSHQDLIDQVDLVILGIK   69 (259)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTSS--CEEEEECSSHHHHHH----HHHHHT----CC--BCSSHHHHHHTCSEEEECSC
T ss_pred             ccEEEEECCCHHHHHHHHHHHhCC--CeEEEECCCHHHHHH----HHHHcC----CE--eeCCHHHHHhcCCEEEEEeC
Confidence            479999999999999999998887  489999999887653    322211    11  23455 56789999999974

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.93  E-value=3e-05  Score=72.07  Aligned_cols=64  Identities=22%  Similarity=0.353  Sum_probs=44.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      .||++||.|.||.++|..|+..|+  +|+.+|+++++++.    +...     ..+  ...+. +.++++|+||++..
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~--~V~v~dr~~~~~~~----l~~~-----G~~--~~~s~~e~~~~~dvvi~~l~   70 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGY--ELVVWNRTASKAEP----LTKL-----GAT--VVENAIDAITPGGIVFSVLA   70 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC--EEEEC-------CT----TTTT-----TCE--ECSSGGGGCCTTCEEEECCS
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCC--eEEEEeCCHHHHHH----HHHc-----CCe--EeCCHHHHHhcCCceeeecc
Confidence            489999999999999999999996  99999999987763    2211     122  23454 67899999999964

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.93  E-value=2.2e-05  Score=75.94  Aligned_cols=73  Identities=19%  Similarity=0.266  Sum_probs=48.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhc-CCCCeEEEEe---CCccchHHHHHHHHHHh---h--cCCC--c----eE-EEcCCc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQ-DFVEELALVD---AKADKLRGEMLDLQHAA---A--FLPR--T----KI-LASVDY  100 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~-~~~~ev~L~D---~~~~~l~~~~~dl~~~~---~--~~~~--~----~v-~~t~~~  100 (350)
                      +|||+|||+|.||..++..|+.. |.  +|.++|   +++++++..   ++...   .  ....  .    ++ ..+++.
T Consensus         2 ~mkI~ViGaG~~G~~~a~~La~~~G~--~V~~~~~~~r~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (404)
T 3c7a_A            2 TVKVCVCGGGNGAHTLSGLAASRDGV--EVRVLTLFADEAERWTKA---LGADELTVIVNEKDGTQTEVKSRPKVITKDP   76 (404)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTSTTE--EEEEECCSTTHHHHHHHH---HTTSCEEEEEECSSSCEEEEEECCSEEESCH
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCCC--EEEEEeCCCCcHHHHHHH---HhhccceeeeecCCCccceeeccceEEeCCH
Confidence            37999999999999999999874 74  899999   665554421   12110   0  0001  1    11 145566


Q ss_pred             -cccCCCCEEEEecC
Q 018760          101 -AVTAGSDLCIVTAG  114 (350)
Q Consensus       101 -~al~~aDiVIi~~g  114 (350)
                       +++++||+||+++.
T Consensus        77 ~~a~~~aD~Vilav~   91 (404)
T 3c7a_A           77 EIAISGADVVILTVP   91 (404)
T ss_dssp             HHHHTTCSEEEECSC
T ss_pred             HHHhCCCCEEEEeCc
Confidence             56899999999974

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.92  E-value=1.6e-05  Score=73.42  Aligned_cols=92  Identities=16%  Similarity=0.253  Sum_probs=65.5

Q ss_pred             CccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCc
Q 018760           13 GGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRT   92 (350)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~   92 (350)
                      ||.||.+.+.    ....   ..+..++.|+|||.+|.+++..|+..|. .+|++++++.++++..+.++.....   ..
T Consensus       110 D~~G~~~~l~----~~~~---~l~~k~vlVlGaGG~g~aia~~L~~~G~-~~v~i~~R~~~~a~~la~~~~~~~~---~~  178 (283)
T 3jyo_A          110 DVSGFGRGME----EGLP---NAKLDSVVQVGAGGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVINNAVG---RE  178 (283)
T ss_dssp             HHHHHHHHHH----HHCT---TCCCSEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSSHHHHHHHHHHHHHHHT---SC
T ss_pred             CHHHHHHHHH----HhCc---CcCCCEEEEECCcHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhhcC---Cc
Confidence            5666666654    3333   3345689999999999999999999885 5899999999988877766664321   23


Q ss_pred             eEEEcC--Cc-cccCCCCEEEEecCC
Q 018760           93 KILASV--DY-AVTAGSDLCIVTAGA  115 (350)
Q Consensus        93 ~v~~t~--~~-~al~~aDiVIi~~g~  115 (350)
                      ++....  +. +.++++|+||.+...
T Consensus       179 ~i~~~~~~~l~~~l~~~DiVInaTp~  204 (283)
T 3jyo_A          179 AVVGVDARGIEDVIAAADGVVNATPM  204 (283)
T ss_dssp             CEEEECSTTHHHHHHHSSEEEECSST
T ss_pred             eEEEcCHHHHHHHHhcCCEEEECCCC
Confidence            343332  44 457899999998643

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.88  E-value=0.0001  Score=65.27  Aligned_cols=107  Identities=15%  Similarity=0.157  Sum_probs=72.8

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCc-eEEEc---CCc-cccCCCC
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRT-KILAS---VDY-AVTAGSD  107 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~-~v~~t---~~~-~al~~aD  107 (350)
                      ..+.|||.|+|| |.+|+.++..|++.|.  +|+++++++++++.    +...     .. .+...   .+. ++++++|
T Consensus        18 ~l~~~~ilVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~----~~~~-----~~~~~~~~Dl~~~~~~~~~~~D   86 (236)
T 3e8x_A           18 YFQGMRVLVVGANGKVARYLLSELKNKGH--EPVAMVRNEEQGPE----LRER-----GASDIVVANLEEDFSHAFASID   86 (236)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSGGGHHH----HHHT-----TCSEEEECCTTSCCGGGGTTCS
T ss_pred             CcCCCeEEEECCCChHHHHHHHHHHhCCC--eEEEEECChHHHHH----HHhC-----CCceEEEcccHHHHHHHHcCCC
Confidence            345689999999 9999999999999985  99999999887653    2221     11 11111   233 5789999


Q ss_pred             EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +||.++|....  ......+..|+.-...+++.+.+..... +|++|
T Consensus        87 ~vi~~ag~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~~~-iv~~S  130 (236)
T 3e8x_A           87 AVVFAAGSGPH--TGADKTILIDLWGAIKTIQEAEKRGIKR-FIMVS  130 (236)
T ss_dssp             EEEECCCCCTT--SCHHHHHHTTTHHHHHHHHHHHHHTCCE-EEEEC
T ss_pred             EEEECCCCCCC--CCccccchhhHHHHHHHHHHHHHcCCCE-EEEEe
Confidence            99999886532  2344556667777777888877765443 55554

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=97.87  E-value=2.1e-05  Score=72.45  Aligned_cols=64  Identities=22%  Similarity=0.323  Sum_probs=49.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      |||+|||+|.||..++..|+..+.  +|+++|+++++++.    +...     .  +..+++. +.++++|+||++..
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~--~V~~~~~~~~~~~~----~~~~-----g--~~~~~~~~~~~~~~Dvvi~~vp   65 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGY--PLIIYDVFPDACKE----FQDA-----G--EQVVSSPADVAEKADRIITMLP   65 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTC--CEEEECSSTHHHHH----HHTT-----T--CEECSSHHHHHHHCSEEEECCS
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH----HHHc-----C--CeecCCHHHHHhcCCEEEEeCC
Confidence            589999999999999999999885  89999999876653    3221     1  2234455 56889999999963

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.85  E-value=0.00024  Score=60.52  Aligned_cols=133  Identities=14%  Similarity=0.210  Sum_probs=76.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhc-CCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cc--cCCC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQ-DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AV--TAGS  106 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~-~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~a--l~~a  106 (350)
                      ..++|.|+|+|.+|..++..|... +.  +|+++|.++++++.    +...     ...+...  ++   . ++  +.++
T Consensus        38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~--~V~vid~~~~~~~~----~~~~-----g~~~~~gd~~~~~~l~~~~~~~~a  106 (183)
T 3c85_A           38 GHAQVLILGMGRIGTGAYDELRARYGK--ISLGIEIREEAAQQ----HRSE-----GRNVISGDATDPDFWERILDTGHV  106 (183)
T ss_dssp             TTCSEEEECCSHHHHHHHHHHHHHHCS--CEEEEESCHHHHHH----HHHT-----TCCEEECCTTCHHHHHTBCSCCCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhccCC--eEEEEECCHHHHHH----HHHC-----CCCEEEcCCCCHHHHHhccCCCCC
Confidence            356899999999999999999988 85  89999999987653    2221     1122211  12   1 23  6789


Q ss_pred             CEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHH
Q 018760          107 DLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSR  186 (350)
Q Consensus       107 DiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r  186 (350)
                      |+||++.+.+           ..|..    ++..+++.+|+..++..+|-.+.. ..+.+ .|.  +.++.- ...-..+
T Consensus       107 d~vi~~~~~~-----------~~~~~----~~~~~~~~~~~~~ii~~~~~~~~~-~~l~~-~G~--~~vi~p-~~~~a~~  166 (183)
T 3c85_A          107 KLVLLAMPHH-----------QGNQT----ALEQLQRRNYKGQIAAIAEYPDQL-EGLLE-SGV--DAAFNI-YSEAGSG  166 (183)
T ss_dssp             CEEEECCSSH-----------HHHHH----HHHHHHHTTCCSEEEEEESSHHHH-HHHHH-HTC--SEEEEH-HHHHHHH
T ss_pred             CEEEEeCCCh-----------HHHHH----HHHHHHHHCCCCEEEEEECCHHHH-HHHHH-cCC--CEEEch-HHHHHHH
Confidence            9999986421           11222    333455557777666666543332 23333 354  355533 2221223


Q ss_pred             HHHHHHHHcCCCC
Q 018760          187 FRFLLADHLDVNA  199 (350)
Q Consensus       187 ~~~~la~~l~v~p  199 (350)
                      +...+.+.++.+-
T Consensus       167 l~~~~~~~~~~~~  179 (183)
T 3c85_A          167 FARHVCKQLEPQF  179 (183)
T ss_dssp             HHHHHHHHHCCCC
T ss_pred             HHHHHHHhcCCcc
Confidence            4444445555443

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.82  E-value=3.6e-05  Score=72.96  Aligned_cols=90  Identities=10%  Similarity=0.190  Sum_probs=59.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccC----CCCEEEE
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTA----GSDLCIV  111 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~----~aDiVIi  111 (350)
                      .+||+|||+|.||.+++..|...|.  +|+++|+++++++.    ... .    ....  +++. +.++    +||+||+
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~--~V~~~dr~~~~~~~----a~~-~----G~~~--~~~~~e~~~~a~~~aDlVil   74 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANH--SVFGYNRSRSGAKS----AVD-E----GFDV--SADLEATLQRAAAEDALIVL   74 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTC--CEEEECSCHHHHHH----HHH-T----TCCE--ESCHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH----HHH-c----CCee--eCCHHHHHHhcccCCCEEEE
Confidence            4699999999999999999999985  89999999876652    111 1    1122  3344 3343    5899999


Q ss_pred             ecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          112 TAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       112 ~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ++..                ..+.++.+.+..+.|+++++.++.
T Consensus        75 avP~----------------~~~~~vl~~l~~~~~~~iv~Dv~S  102 (341)
T 3ktd_A           75 AVPM----------------TAIDSLLDAVHTHAPNNGFTDVVS  102 (341)
T ss_dssp             CSCH----------------HHHHHHHHHHHHHCTTCCEEECCS
T ss_pred             eCCH----------------HHHHHHHHHHHccCCCCEEEEcCC
Confidence            9631                122333344444567777766653

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.81  E-value=0.00025  Score=57.99  Aligned_cols=95  Identities=14%  Similarity=0.238  Sum_probs=61.7

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----c-ccCCCC
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----A-VTAGSD  107 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~-al~~aD  107 (350)
                      ....+|.|+|+|.+|..++..|...+.  +++++|.++++++.    +...     ...+...  ++.    + .+.+||
T Consensus         5 ~~~~~viIiG~G~~G~~la~~L~~~g~--~v~vid~~~~~~~~----~~~~-----g~~~i~gd~~~~~~l~~a~i~~ad   73 (140)
T 3fwz_A            5 DICNHALLVGYGRVGSLLGEKLLASDI--PLVVIETSRTRVDE----LRER-----GVRAVLGNAANEEIMQLAHLECAK   73 (140)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHH----HHHT-----TCEEEESCTTSHHHHHHTTGGGCS
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCC--CEEEEECCHHHHHH----HHHc-----CCCEEECCCCCHHHHHhcCcccCC
Confidence            334689999999999999999999886  99999999987653    3321     1223221  121    1 367999


Q ss_pred             EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +||++.+..           ..|..+    +..+++.+|+..++...|
T Consensus        74 ~vi~~~~~~-----------~~n~~~----~~~a~~~~~~~~iiar~~  106 (140)
T 3fwz_A           74 WLILTIPNG-----------YEAGEI----VASARAKNPDIEIIARAH  106 (140)
T ss_dssp             EEEECCSCH-----------HHHHHH----HHHHHHHCSSSEEEEEES
T ss_pred             EEEEECCCh-----------HHHHHH----HHHHHHHCCCCeEEEEEC
Confidence            999986422           123222    334455577766655554

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.70  E-value=0.00046  Score=57.28  Aligned_cols=69  Identities=16%  Similarity=0.291  Sum_probs=48.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cc-cCCCCE
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AV-TAGSDL  108 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~a-l~~aDi  108 (350)
                      ..++|+|+|+|.+|..++..|...+.  +|+++|+++++++.    +...  .  ...+...  ++   . ++ +.++|+
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~--~V~vid~~~~~~~~----~~~~--~--g~~~~~~d~~~~~~l~~~~~~~ad~   87 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGH--SVVVVDKNEYAFHR----LNSE--F--SGFTVVGDAAEFETLKECGMEKADM   87 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCGGGGGG----SCTT--C--CSEEEESCTTSHHHHHTTTGGGCSE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHH----HHhc--C--CCcEEEecCCCHHHHHHcCcccCCE
Confidence            35799999999999999999999885  89999999987653    2100  0  1222211  12   1 22 678999


Q ss_pred             EEEecC
Q 018760          109 CIVTAG  114 (350)
Q Consensus       109 VIi~~g  114 (350)
                      ||++.+
T Consensus        88 Vi~~~~   93 (155)
T 2g1u_A           88 VFAFTN   93 (155)
T ss_dssp             EEECSS
T ss_pred             EEEEeC
Confidence            999975

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.70  E-value=7.2e-05  Score=68.98  Aligned_cols=90  Identities=16%  Similarity=0.184  Sum_probs=61.9

Q ss_pred             CCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCC
Q 018760           12 PGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR   91 (350)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~   91 (350)
                      -||.||.+.+.    ....   ..+..++.|+|+|.+|.+++..|+..|. .+|+++++++++++..+.++...    ..
T Consensus       108 TD~~G~~~~L~----~~~~---~l~~k~vlvlGaGg~g~aia~~L~~~G~-~~v~v~~R~~~~a~~la~~~~~~----~~  175 (281)
T 3o8q_A          108 TDGEGLVQDLL----AQQV---LLKGATILLIGAGGAARGVLKPLLDQQP-ASITVTNRTFAKAEQLAELVAAY----GE  175 (281)
T ss_dssp             CHHHHHHHHHH----HTTC---CCTTCEEEEECCSHHHHHHHHHHHTTCC-SEEEEEESSHHHHHHHHHHHGGG----SC
T ss_pred             cHHHHHHHHHH----HhCC---CccCCEEEEECchHHHHHHHHHHHhcCC-CeEEEEECCHHHHHHHHHHhhcc----CC
Confidence            46666666653    3332   3345699999999999999999999885 58999999998887655555421    12


Q ss_pred             ceEEEcCCccc-cCCCCEEEEecCCC
Q 018760           92 TKILASVDYAV-TAGSDLCIVTAGAR  116 (350)
Q Consensus        92 ~~v~~t~~~~a-l~~aDiVIi~~g~~  116 (350)
                      ..+.   ++++ ..++|+||.+.+..
T Consensus       176 ~~~~---~~~~l~~~aDiIInaTp~g  198 (281)
T 3o8q_A          176 VKAQ---AFEQLKQSYDVIINSTSAS  198 (281)
T ss_dssp             EEEE---EGGGCCSCEEEEEECSCCC
T ss_pred             eeEe---eHHHhcCCCCEEEEcCcCC
Confidence            2332   2332 27899999986543

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=97.68  E-value=3e-05  Score=71.18  Aligned_cols=85  Identities=13%  Similarity=0.172  Sum_probs=59.3

Q ss_pred             CccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCc
Q 018760           13 GGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRT   92 (350)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~   92 (350)
                      |+.||...+.    ..+.   ..+.+||+|||+|.+|.+++..|...+.  +|.++|+++++++.    +....      
T Consensus       112 d~~G~~~~l~----~~~~---~~~~~~v~iiGaG~~g~aia~~L~~~g~--~V~v~~r~~~~~~~----l~~~~------  172 (275)
T 2hk9_A          112 DWIGFLKSLK----SLIP---EVKEKSILVLGAGGASRAVIYALVKEGA--KVFLWNRTKEKAIK----LAQKF------  172 (275)
T ss_dssp             HHHHHHHHHH----HHCT---TGGGSEEEEECCSHHHHHHHHHHHHHTC--EEEEECSSHHHHHH----HTTTS------
T ss_pred             CHHHHHHHHH----HhCC---CcCCCEEEEECchHHHHHHHHHHHHcCC--EEEEEECCHHHHHH----HHHHc------
Confidence            4555555543    3332   3345799999999999999999999885  99999999876653    32211      


Q ss_pred             eEEEcCCc-cccCCCCEEEEecCCC
Q 018760           93 KILASVDY-AVTAGSDLCIVTAGAR  116 (350)
Q Consensus        93 ~v~~t~~~-~al~~aDiVIi~~g~~  116 (350)
                      .+....+. +.++++|+||++.+.+
T Consensus       173 g~~~~~~~~~~~~~aDiVi~atp~~  197 (275)
T 2hk9_A          173 PLEVVNSPEEVIDKVQVIVNTTSVG  197 (275)
T ss_dssp             CEEECSCGGGTGGGCSEEEECSSTT
T ss_pred             CCeeehhHHhhhcCCCEEEEeCCCC
Confidence            13333355 5688999999997544

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=97.68  E-value=0.00018  Score=65.10  Aligned_cols=62  Identities=11%  Similarity=0.169  Sum_probs=45.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeC--CccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDA--KADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~--~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      |||+|||+|.||..++..|+..+.  +|+++|+  ++++++    .+...     ...    ++. +.+++||+||++..
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~--~V~~~~~~~~~~~~~----~~~~~-----g~~----~~~~~~~~~aDvvi~~v~   65 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGV--EVVTSLEGRSPSTIE----RARTV-----GVT----ETSEEDVYSCPVVISAVT   65 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTC--EEEECCTTCCHHHHH----HHHHH-----TCE----ECCHHHHHTSSEEEECSC
T ss_pred             CeEEEEechHHHHHHHHHHHHCCC--eEEEeCCccCHHHHH----HHHHC-----CCc----CCHHHHHhcCCEEEEECC
Confidence            699999999999999999999885  8999887  444333    23321     112    244 56789999999964

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.67  E-value=8.2e-05  Score=69.62  Aligned_cols=93  Identities=14%  Similarity=0.163  Sum_probs=62.5

Q ss_pred             CccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC---ccchHHHHHHHHHHhhcC
Q 018760           13 GGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK---ADKLRGEMLDLQHAAAFL   89 (350)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~---~~~l~~~~~dl~~~~~~~   89 (350)
                      ||.||.+.+.    ....   ..+..++.|+|||.+|.+++..|+..|. .+|++++++   .++++..+.++.....  
T Consensus       131 D~~Gf~~~L~----~~~~---~l~gk~~lVlGAGGaaraia~~L~~~G~-~~v~v~nRt~~~~~~a~~la~~~~~~~~--  200 (312)
T 3t4e_A          131 DGTGHIRAIK----ESGF---DMRGKTMVLLGAGGAATAIGAQAAIEGI-KEIKLFNRKDDFFEKAVAFAKRVNENTD--  200 (312)
T ss_dssp             HHHHHHHHHH----HTTC---CCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEECSSTHHHHHHHHHHHHHHHSS--
T ss_pred             cHHHHHHHHH----hcCC---CcCCCEEEEECcCHHHHHHHHHHHHcCC-CEEEEEECCCchHHHHHHHHHHhhhccC--
Confidence            5666666664    3333   3445699999999999999999999885 589999999   6667665555554321  


Q ss_pred             CCceEEEcCC----ccccCCCCEEEEecCC
Q 018760           90 PRTKILASVD----YAVTAGSDLCIVTAGA  115 (350)
Q Consensus        90 ~~~~v~~t~~----~~al~~aDiVIi~~g~  115 (350)
                      ....+....+    .+.+.++|+||.+.+.
T Consensus       201 ~~v~~~~~~~l~~~~~~l~~~DiIINaTp~  230 (312)
T 3t4e_A          201 CVVTVTDLADQHAFTEALASADILTNGTKV  230 (312)
T ss_dssp             CEEEEEETTCHHHHHHHHHHCSEEEECSST
T ss_pred             cceEEechHhhhhhHhhccCceEEEECCcC
Confidence            1112222223    2347899999998644

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.64  E-value=7.5e-05  Score=65.01  Aligned_cols=97  Identities=20%  Similarity=0.297  Sum_probs=67.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc--cccCCCCEEEEe
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY--AVTAGSDLCIVT  112 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~--~al~~aDiVIi~  112 (350)
                      |||.|+|| |.+|+.++..|+..|.  +|+++++++++++.    +.      ....+...  +|.  +++.++|+||.+
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~----~~------~~~~~~~~D~~d~~~~~~~~~d~vi~~   68 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGH--EVTAIVRNAGKITQ----TH------KDINILQKDIFDLTLSDLSDQNVVVDA   68 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCSHHHHH----HC------SSSEEEECCGGGCCHHHHTTCSEEEEC
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEEcCchhhhh----cc------CCCeEEeccccChhhhhhcCCCEEEEC
Confidence            69999998 9999999999999984  99999999876542    21      12233321  111  468899999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +|.+...       ...|....+.+++.+++.... .+|++|
T Consensus        69 ag~~~~~-------~~~~~~~~~~l~~a~~~~~~~-~~v~~S  102 (221)
T 3ew7_A           69 YGISPDE-------AEKHVTSLDHLISVLNGTVSP-RLLVVG  102 (221)
T ss_dssp             CCSSTTT-------TTSHHHHHHHHHHHHCSCCSS-EEEEEC
T ss_pred             CcCCccc-------cchHHHHHHHHHHHHHhcCCc-eEEEEe
Confidence            9875322       223667777788888776433 355554

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.64  E-value=7.8e-05  Score=65.19  Aligned_cols=98  Identities=17%  Similarity=0.166  Sum_probs=68.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-----cccCCCCEEEE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-----AVTAGSDLCIV  111 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-----~al~~aDiVIi  111 (350)
                      |||.|+|| |.+|+.++..|+..|.  +|++++++++++..    +..     ....+.. .|.     +++.++|+||.
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~----~~~-----~~~~~~~-~D~~d~~~~~~~~~d~vi~   68 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGH--EVLAVVRDPQKAAD----RLG-----ATVATLV-KEPLVLTEADLDSVDAVVD   68 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHH----HTC-----TTSEEEE-CCGGGCCHHHHTTCSEEEE
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCC--EEEEEEeccccccc----ccC-----CCceEEe-cccccccHhhcccCCEEEE
Confidence            68999999 9999999999999985  99999998865542    211     1233332 232     45889999999


Q ss_pred             ecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          112 TAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       112 ~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +++....+..     ...|....+.+++.+.+..  ..+|++|
T Consensus        69 ~ag~~~~~~~-----~~~n~~~~~~l~~a~~~~~--~~~v~~S  104 (224)
T 3h2s_A           69 ALSVPWGSGR-----GYLHLDFATHLVSLLRNSD--TLAVFIL  104 (224)
T ss_dssp             CCCCCTTSSC-----THHHHHHHHHHHHTCTTCC--CEEEEEC
T ss_pred             CCccCCCcch-----hhHHHHHHHHHHHHHHHcC--CcEEEEe
Confidence            9887532222     2347777888888888876  4455554

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.63  E-value=0.00057  Score=55.54  Aligned_cols=67  Identities=16%  Similarity=0.271  Sum_probs=48.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc-----ccCCCCEE
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA-----VTAGSDLC  109 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~-----al~~aDiV  109 (350)
                      +++|.|+|+|.+|+.++..|...|.  +|+++|.++++++.    +.+.     ...+...  ++.+     .+.++|+|
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~--~V~~id~~~~~~~~----~~~~-----~~~~~~gd~~~~~~l~~~~~~~~d~v   74 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK--KVLAVDKSKEKIEL----LEDE-----GFDAVIADPTDESFYRSLDLEGVSAV   74 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHH----HHHT-----TCEEEECCTTCHHHHHHSCCTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC--eEEEEECCHHHHHH----HHHC-----CCcEEECCCCCHHHHHhCCcccCCEE
Confidence            4689999999999999999999885  89999999887653    2221     1122211  1221     25789999


Q ss_pred             EEecC
Q 018760          110 IVTAG  114 (350)
Q Consensus       110 Ii~~g  114 (350)
                      |++.+
T Consensus        75 i~~~~   79 (141)
T 3llv_A           75 LITGS   79 (141)
T ss_dssp             EECCS
T ss_pred             EEecC
Confidence            99865

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.63  E-value=0.00019  Score=55.98  Aligned_cols=69  Identities=23%  Similarity=0.255  Sum_probs=49.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCCEE
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSDLC  109 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aDiV  109 (350)
                      +++||+|+|+|.+|..++..|...+. .+|+++|+++++++.    +...     .......  ++   . +.++++|+|
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~-~~v~~~~r~~~~~~~----~~~~-----~~~~~~~d~~~~~~~~~~~~~~d~v   73 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSN-YSVTVADHDLAALAV----LNRM-----GVATKQVDAKDEAGLAKALGGFDAV   73 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSS-EEEEEEESCHHHHHH----HHTT-----TCEEEECCTTCHHHHHHHTTTCSEE
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCC-ceEEEEeCCHHHHHH----HHhC-----CCcEEEecCCCHHHHHHHHcCCCEE
Confidence            34799999999999999999999882 389999999877653    2211     1222211  12   2 347899999


Q ss_pred             EEecC
Q 018760          110 IVTAG  114 (350)
Q Consensus       110 Ii~~g  114 (350)
                      |.+++
T Consensus        74 i~~~~   78 (118)
T 3ic5_A           74 ISAAP   78 (118)
T ss_dssp             EECSC
T ss_pred             EECCC
Confidence            99974

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.60  E-value=0.00046  Score=67.02  Aligned_cols=136  Identities=12%  Similarity=0.174  Sum_probs=81.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-c-ccCCCCE
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-A-VTAGSDL  108 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~-al~~aDi  108 (350)
                      +.++|.|+|+|.+|..++..|...+.  +++++|.|+++++.    +....     ..+...  ++   + + .+.+||+
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~--~vvvId~d~~~v~~----~~~~g-----~~vi~GDat~~~~L~~agi~~A~~   71 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGV--KMVVLDHDPDHIET----LRKFG-----MKVFYGDATRMDLLESAGAAKAEV   71 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTC--CEEEEECCHHHHHH----HHHTT-----CCCEESCTTCHHHHHHTTTTTCSE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC--CEEEEECCHHHHHH----HHhCC-----CeEEEcCCCCHHHHHhcCCCccCE
Confidence            34689999999999999999999886  89999999987763    33211     122211  12   1 2 3789999


Q ss_pred             EEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc-CCcchHHHHHHHHhCCCCCcEeeecCCccHHHH
Q 018760          109 CIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA-NPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRF  187 (350)
Q Consensus       109 VIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t-NP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~  187 (350)
                      ||++.+.+               ..-..++..+++.+|+..||.-+ ++...  ..+ +..|.  ..||-- +..-+.++
T Consensus        72 viv~~~~~---------------~~n~~i~~~ar~~~p~~~Iiara~~~~~~--~~L-~~~Ga--d~Vi~~-~~~~a~~l  130 (413)
T 3l9w_A           72 LINAIDDP---------------QTNLQLTEMVKEHFPHLQIIARARDVDHY--IRL-RQAGV--EKPERE-TFEGALKT  130 (413)
T ss_dssp             EEECCSSH---------------HHHHHHHHHHHHHCTTCEEEEEESSHHHH--HHH-HHTTC--SSCEET-THHHHHHH
T ss_pred             EEECCCCh---------------HHHHHHHHHHHHhCCCCeEEEEECCHHHH--HHH-HHCCC--CEEECc-cHHHHHHH
Confidence            99996421               22233455556678886665555 44322  122 22343  345532 32333444


Q ss_pred             HHHHHHHcCCCCcceE
Q 018760          188 RFLLADHLDVNAQDVQ  203 (350)
Q Consensus       188 ~~~la~~l~v~p~~v~  203 (350)
                      -..+-..+|+++.++.
T Consensus       131 a~~~L~~lg~~~~~~~  146 (413)
T 3l9w_A          131 GRLALESLGLGPYEAR  146 (413)
T ss_dssp             HHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHcCCCHHHHH
Confidence            5555566666666554

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.59  E-value=0.00012  Score=67.08  Aligned_cols=89  Identities=16%  Similarity=0.230  Sum_probs=59.9

Q ss_pred             CccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCc
Q 018760           13 GGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRT   92 (350)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~   92 (350)
                      ||.||...+.    ....   ..+.++|.|+|+|.+|.+++..|+..|  .+|+++|++.++++..+..+..   . .  
T Consensus       102 D~~G~~~~L~----~~~~---~~~~~~vlvlGaGg~g~a~a~~L~~~G--~~v~v~~R~~~~a~~l~~~~~~---~-~--  166 (272)
T 1p77_A          102 DGIGLVTDLQ----RLNW---LRPNQHVLILGAGGATKGVLLPLLQAQ--QNIVLANRTFSKTKELAERFQP---Y-G--  166 (272)
T ss_dssp             HHHHHHHHHH----HTTC---CCTTCEEEEECCSHHHHTTHHHHHHTT--CEEEEEESSHHHHHHHHHHHGG---G-S--
T ss_pred             CHHHHHHHHH----HhCC---CcCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHccc---c-C--
Confidence            5555555554    4332   234568999999999999999999998  4999999999887755444432   1 1  


Q ss_pred             eEEEcCCcccc-C-CCCEEEEecCCCc
Q 018760           93 KILASVDYAVT-A-GSDLCIVTAGARQ  117 (350)
Q Consensus        93 ~v~~t~~~~al-~-~aDiVIi~~g~~~  117 (350)
                      .+... +.+++ + ++|+||.+.+.+.
T Consensus       167 ~~~~~-~~~~~~~~~~DivIn~t~~~~  192 (272)
T 1p77_A          167 NIQAV-SMDSIPLQTYDLVINATSAGL  192 (272)
T ss_dssp             CEEEE-EGGGCCCSCCSEEEECCCC--
T ss_pred             CeEEe-eHHHhccCCCCEEEECCCCCC
Confidence            22221 34445 3 8999999987543

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.59  E-value=0.00016  Score=67.73  Aligned_cols=94  Identities=14%  Similarity=0.200  Sum_probs=63.5

Q ss_pred             CCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC---ccchHHHHHHHHHHhhc
Q 018760           12 PGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK---ADKLRGEMLDLQHAAAF   88 (350)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~---~~~l~~~~~dl~~~~~~   88 (350)
                      -||.||.+.+.    ....   ..+..++.|+|||.+|.+++..|+..|. .+|++++++   .++++..+.++..... 
T Consensus       136 TD~~Gf~~~L~----~~~~---~l~gk~~lVlGaGG~g~aia~~L~~~Ga-~~V~i~nR~~~~~~~a~~la~~~~~~~~-  206 (315)
T 3tnl_A          136 TDGTGYMRALK----EAGH---DIIGKKMTICGAGGAATAICIQAALDGV-KEISIFNRKDDFYANAEKTVEKINSKTD-  206 (315)
T ss_dssp             CHHHHHHHHHH----HTTC---CCTTSEEEEECCSHHHHHHHHHHHHTTC-SEEEEEECSSTTHHHHHHHHHHHHHHSS-
T ss_pred             CCHHHHHHHHH----HcCC---CccCCEEEEECCChHHHHHHHHHHHCCC-CEEEEEECCCchHHHHHHHHHHhhhhcC-
Confidence            46666666664    3333   3445699999999999999999999885 589999999   7777666656654321 


Q ss_pred             CCCceEEEcCC---c-cccCCCCEEEEecCC
Q 018760           89 LPRTKILASVD---Y-AVTAGSDLCIVTAGA  115 (350)
Q Consensus        89 ~~~~~v~~t~~---~-~al~~aDiVIi~~g~  115 (350)
                       ....+..-.+   . +.+.++|+||.+...
T Consensus       207 -~~~~~~~~~~~~~l~~~l~~aDiIINaTp~  236 (315)
T 3tnl_A          207 -CKAQLFDIEDHEQLRKEIAESVIFTNATGV  236 (315)
T ss_dssp             -CEEEEEETTCHHHHHHHHHTCSEEEECSST
T ss_pred             -CceEEeccchHHHHHhhhcCCCEEEECccC
Confidence             1122222222   1 346799999998643

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.58  E-value=0.00022  Score=67.32  Aligned_cols=65  Identities=18%  Similarity=0.278  Sum_probs=48.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      +.+||+|||+|.||.+++..|...+.  +|+++|+++++...    .....    ..++  + +. +++++||+||+++
T Consensus        15 ~~~~I~IIG~G~mG~alA~~L~~~G~--~V~~~~~~~~~~~~----~a~~~----G~~~--~-~~~e~~~~aDvVilav   80 (338)
T 1np3_A           15 QGKKVAIIGYGSQGHAHACNLKDSGV--DVTVGLRSGSATVA----KAEAH----GLKV--A-DVKTAVAAADVVMILT   80 (338)
T ss_dssp             HTSCEEEECCSHHHHHHHHHHHHTTC--CEEEECCTTCHHHH----HHHHT----TCEE--E-CHHHHHHTCSEEEECS
T ss_pred             cCCEEEEECchHHHHHHHHHHHHCcC--EEEEEECChHHHHH----HHHHC----CCEE--c-cHHHHHhcCCEEEEeC
Confidence            35799999999999999999999885  89999998765321    11111    1233  3 54 6789999999996

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.56  E-value=0.00019  Score=65.87  Aligned_cols=89  Identities=18%  Similarity=0.269  Sum_probs=60.1

Q ss_pred             CCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCC
Q 018760           12 PGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR   91 (350)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~   91 (350)
                      -||.||.+.+   ++....   ..+..++.|+|+|.+|.+++..|+..|. .+|++++++.++++..+.++..     ..
T Consensus       101 TD~~G~~~~l---L~~~~~---~l~~k~~lvlGaGg~~~aia~~L~~~G~-~~v~i~~R~~~~a~~la~~~~~-----~~  168 (272)
T 3pwz_A          101 FDGIGLLRDI---EENLGE---PLRNRRVLLLGAGGAVRGALLPFLQAGP-SELVIANRDMAKALALRNELDH-----SR  168 (272)
T ss_dssp             CHHHHHHHHH---HTTSCC---CCTTSEEEEECCSHHHHHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHCC-----TT
T ss_pred             CCHHHHHHHH---HHHcCC---CccCCEEEEECccHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhcc-----CC
Confidence            3566666662   223332   3345699999999999999999999885 5899999999887755544432     12


Q ss_pred             ceEEEcCCcccc--CCCCEEEEecCC
Q 018760           92 TKILASVDYAVT--AGSDLCIVTAGA  115 (350)
Q Consensus        92 ~~v~~t~~~~al--~~aDiVIi~~g~  115 (350)
                      ..+.   +++++  .++|+||.+.+.
T Consensus       169 ~~~~---~~~~l~~~~~DivInaTp~  191 (272)
T 3pwz_A          169 LRIS---RYEALEGQSFDIVVNATSA  191 (272)
T ss_dssp             EEEE---CSGGGTTCCCSEEEECSSG
T ss_pred             eeEe---eHHHhcccCCCEEEECCCC
Confidence            2332   23333  789999998643

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.56  E-value=0.00029  Score=64.48  Aligned_cols=80  Identities=15%  Similarity=0.150  Sum_probs=57.2

Q ss_pred             CCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCC
Q 018760           12 PGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR   91 (350)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~   91 (350)
                      -||.||.+.+.    ...       ..|+.|||+|.+|++++..|+..|  .+|++++++.++++..+ ++.        
T Consensus       104 TD~~Gf~~~L~----~~~-------~k~vlvlGaGGaaraia~~L~~~G--~~v~V~nRt~~ka~~la-~~~--------  161 (269)
T 3phh_A          104 TDALGFYLSLK----QKN-------YQNALILGAGGSAKALACELKKQG--LQVSVLNRSSRGLDFFQ-RLG--------  161 (269)
T ss_dssp             CHHHHHHHHCC--------------CCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCTTHHHHH-HHT--------
T ss_pred             ChHHHHHHHHH----HcC-------CCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH-HCC--------
Confidence            35666666654    311       469999999999999999999998  59999999999887544 322        


Q ss_pred             ceEEEcCCccccCCCCEEEEecCCC
Q 018760           92 TKILASVDYAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        92 ~~v~~t~~~~al~~aDiVIi~~g~~  116 (350)
                      ....   .++++.++|+||.+.+..
T Consensus       162 ~~~~---~~~~l~~~DiVInaTp~G  183 (269)
T 3phh_A          162 CDCF---MEPPKSAFDLIINATSAS  183 (269)
T ss_dssp             CEEE---SSCCSSCCSEEEECCTTC
T ss_pred             CeEe---cHHHhccCCEEEEcccCC
Confidence            1222   344556999999986543

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.54  E-value=5.8e-05  Score=72.02  Aligned_cols=72  Identities=24%  Similarity=0.356  Sum_probs=47.2

Q ss_pred             CCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEE-cCCc----cccCC
Q 018760           31 PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA-SVDY----AVTAG  105 (350)
Q Consensus        31 ~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~-t~~~----~al~~  105 (350)
                      +.++.++|||.|+|||.||+.++..|.+..   +|.+.|++.++++.    +.+..     ..+.. .+|.    +.+++
T Consensus        10 ~~~~g~~mkilvlGaG~vG~~~~~~L~~~~---~v~~~~~~~~~~~~----~~~~~-----~~~~~d~~d~~~l~~~~~~   77 (365)
T 3abi_A           10 HHIEGRHMKVLILGAGNIGRAIAWDLKDEF---DVYIGDVNNENLEK----VKEFA-----TPLKVDASNFDKLVEVMKE   77 (365)
T ss_dssp             ------CCEEEEECCSHHHHHHHHHHTTTS---EEEEEESCHHHHHH----HTTTS-----EEEECCTTCHHHHHHHHTT
T ss_pred             ccccCCccEEEEECCCHHHHHHHHHHhcCC---CeEEEEcCHHHHHH----HhccC-----CcEEEecCCHHHHHHHHhC
Confidence            346667899999999999999998887643   89999999877653    22111     11221 1232    34799


Q ss_pred             CCEEEEecC
Q 018760          106 SDLCIVTAG  114 (350)
Q Consensus       106 aDiVIi~~g  114 (350)
                      +|+||.+++
T Consensus        78 ~DvVi~~~p   86 (365)
T 3abi_A           78 FELVIGALP   86 (365)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEEecC
Confidence            999999975

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.54  E-value=0.00054  Score=60.14  Aligned_cols=67  Identities=10%  Similarity=0.320  Sum_probs=48.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-c-ccCCCCEEE
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-A-VTAGSDLCI  110 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~-al~~aDiVI  110 (350)
                      |||.|+|+|.+|+.++..|...+.  +++++|.++++++.    +....    ...+...  ++   . + .+++||+||
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~--~v~vid~~~~~~~~----l~~~~----~~~~i~gd~~~~~~l~~a~i~~ad~vi   70 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKY--GVVIINKDRELCEE----FAKKL----KATIIHGDGSHKEILRDAEVSKNDVVV   70 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTC--CEEEEESCHHHHHH----HHHHS----SSEEEESCTTSHHHHHHHTCCTTCEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHH----HHHHc----CCeEEEcCCCCHHHHHhcCcccCCEEE
Confidence            689999999999999999999885  99999999987653    33221    1222221  12   1 2 378999999


Q ss_pred             EecC
Q 018760          111 VTAG  114 (350)
Q Consensus       111 i~~g  114 (350)
                      ++.+
T Consensus        71 ~~~~   74 (218)
T 3l4b_C           71 ILTP   74 (218)
T ss_dssp             ECCS
T ss_pred             EecC
Confidence            9864

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=96.66  E-value=1.3e-05  Score=70.21  Aligned_cols=93  Identities=14%  Similarity=0.213  Sum_probs=60.2

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecC
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAG  114 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g  114 (350)
                      .+.|||+|||+|.||..++..|...+.  +|.++|++++ .+.    +...       .+..++..+.++++|+||++..
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~--~V~~~~r~~~-~~~----~~~~-------g~~~~~~~~~~~~aDvVilav~   82 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGY--SVVFGSRNPQ-VSS----LLPR-------GAEVLCYSEAASRSDVIVLAVH   82 (201)
Confidence            345799999999999999999988875  8999999876 321    2110       1222222366889999999963


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD  158 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~  158 (350)
                      ..    ..+        .++ +    +....++.++|.++|...
T Consensus        83 ~~----~~~--------~v~-~----l~~~~~~~ivI~~~~G~~  109 (201)
T 2yjz_A           83 RE----HYD--------FLA-E----LADSLKGRVLIDVSNNQK  109 (201)
Confidence            21    110        111 1    222335678888888774

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=97.50  E-value=3.4e-05  Score=70.69  Aligned_cols=64  Identities=13%  Similarity=0.228  Sum_probs=40.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeE-EEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEEL-ALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev-~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      +|||+|||+|.||..++..|+.. .  +| .++|+++++++.    +....    ..   .+++. +.++++|+||++..
T Consensus         2 ~m~I~iIG~G~mG~~la~~l~~~-~--~v~~v~~~~~~~~~~----~~~~~----g~---~~~~~~~~~~~~DvVilav~   67 (276)
T 2i76_A            2 SLVLNFVGTGTLTRFFLECLKDR-Y--EIGYILSRSIDRARN----LAEVY----GG---KAATLEKHPELNGVVFVIVP   67 (276)
T ss_dssp             --CCEEESCCHHHHHHHHTTC-------CCCEECSSHHHHHH----HHHHT----CC---CCCSSCCCCC---CEEECSC
T ss_pred             CceEEEEeCCHHHHHHHHHHHHc-C--cEEEEEeCCHHHHHH----HHHHc----CC---ccCCHHHHHhcCCEEEEeCC
Confidence            36999999999999999888776 3  77 599999876653    32221    11   24455 45789999999963

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=97.50  E-value=0.0027  Score=58.74  Aligned_cols=114  Identities=11%  Similarity=0.110  Sum_probs=73.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEE-Ec--CC---c-cccCCCC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKIL-AS--VD---Y-AVTAGSD  107 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~-~t--~~---~-~al~~aD  107 (350)
                      +.++|.|+|| |.+|++++..|++.|.  +|++++++.++.+.....+.....  ....+. ..  +|   . +.++++|
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~d   85 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKYP--GRFETAVVEDMLKQGAYDEVIKGAA   85 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHST--TTEEEEECSCTTSTTTTTTTTTTCS
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCcccHHHHHHHhhccCC--CceEEEEecCCcChHHHHHHHcCCC
Confidence            4579999999 9999999999999885  999999987665433322322110  122222 11  12   2 3466899


Q ss_pred             EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +||.+++.... .....+.+..|+.-...+.+.+.+...-..+|++|
T Consensus        86 ~vih~A~~~~~-~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~S  131 (342)
T 1y1p_A           86 GVAHIASVVSF-SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTS  131 (342)
T ss_dssp             EEEECCCCCSC-CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred             EEEEeCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence            99999875432 23345566778888888888776433234466655

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.49  E-value=0.0012  Score=61.28  Aligned_cols=114  Identities=12%  Similarity=0.223  Sum_probs=75.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccC--CC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTA--GS  106 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~--~a  106 (350)
                      ++|+|.|+|| |.+|++++..|++.|.  +|+++|++.+........+.....  ....+...  +|.    +.++  ++
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~~~   79 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGY--DVVIADNLVNSKREAIARIEKITG--KTPAFHETDVSDERALARIFDAHPI   79 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSSCTHHHHHHHHHHS--CCCEEECCCTTCHHHHHHHHHHSCC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCC--cEEEEecCCcchHHHHHHHHhhcC--CCceEEEeecCCHHHHHHHHhccCC
Confidence            4579999998 9999999999999985  999999987766544444443221  12233211  122    2344  79


Q ss_pred             CEEEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          107 DLCIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       107 DiVIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |+||.+++.....  .....+.+..|+.-...+++.+.+..... +|++|
T Consensus        80 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-iv~~S  128 (341)
T 3enk_A           80 TAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKR-IVFSS  128 (341)
T ss_dssp             CEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCE-EEEEE
T ss_pred             cEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCE-EEEEe
Confidence            9999998754211  11234556678888888888888765444 44444

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.49  E-value=0.00012  Score=67.46  Aligned_cols=95  Identities=12%  Similarity=0.121  Sum_probs=63.1

Q ss_pred             CccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCc
Q 018760           13 GGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRT   92 (350)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~   92 (350)
                      |+.||.+.+.    ....   ..+.+++.|+|+|.+|.+++..|+..|   +|+++|++.++++..+.++..........
T Consensus       111 d~~G~~~~L~----~~~~---~l~~k~vlV~GaGgiG~aia~~L~~~G---~V~v~~r~~~~~~~l~~~~~~~~~~~~~~  180 (287)
T 1nvt_A          111 DGIGARMALE----EEIG---RVKDKNIVIYGAGGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAEKLNKKFGE  180 (287)
T ss_dssp             HHHHHHHHHH----HHHC---CCCSCEEEEECCSHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHHHHTCCHHH
T ss_pred             CHHHHHHHHH----HhCC---CcCCCEEEEECchHHHHHHHHHHHHCC---CEEEEECCHHHHHHHHHHHhhhcccccce
Confidence            5555555554    3333   223468999999999999999999988   89999999988876665554321000001


Q ss_pred             eEEEcCCccccCCCCEEEEecCCCc
Q 018760           93 KILASVDYAVTAGSDLCIVTAGARQ  117 (350)
Q Consensus        93 ~v~~t~~~~al~~aDiVIi~~g~~~  117 (350)
                      .+..++-.+.+.++|+||.+++...
T Consensus       181 ~~d~~~~~~~~~~~DilVn~ag~~~  205 (287)
T 1nvt_A          181 EVKFSGLDVDLDGVDIIINATPIGM  205 (287)
T ss_dssp             HEEEECTTCCCTTCCEEEECSCTTC
T ss_pred             eEEEeeHHHhhCCCCEEEECCCCCC
Confidence            1222211356889999999987654

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.49  E-value=0.00018  Score=65.85  Aligned_cols=89  Identities=16%  Similarity=0.185  Sum_probs=60.1

Q ss_pred             CccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCc
Q 018760           13 GGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRT   92 (350)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~   92 (350)
                      ||.||...+.    ....   ..+.+++.|+|+|.+|.+++..|+..|  .+|+++|+++++++..+..+..   . .  
T Consensus       102 D~~G~~~~L~----~~~~---~l~~k~vlViGaGg~g~a~a~~L~~~G--~~V~v~~R~~~~~~~la~~~~~---~-~--  166 (271)
T 1nyt_A          102 DGVGLLSDLE----RLSF---IRPGLRILLIGAGGASRGVLLPLLSLD--CAVTITNRTVSRAEELAKLFAH---T-G--  166 (271)
T ss_dssp             HHHHHHHHHH----HHTC---CCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSHHHHHHHHHHTGG---G-S--
T ss_pred             CHHHHHHHHH----hcCc---CcCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHhhc---c-C--
Confidence            4555555554    3332   224468999999999999999999998  4999999998877654433321   1 1  


Q ss_pred             eEEEcCCcccc--CCCCEEEEecCCCc
Q 018760           93 KILASVDYAVT--AGSDLCIVTAGARQ  117 (350)
Q Consensus        93 ~v~~t~~~~al--~~aDiVIi~~g~~~  117 (350)
                      .+.. .+.+++  .++|+||.+++.+.
T Consensus       167 ~~~~-~~~~~~~~~~~DivVn~t~~~~  192 (271)
T 1nyt_A          167 SIQA-LSMDELEGHEFDLIINATSSGI  192 (271)
T ss_dssp             SEEE-CCSGGGTTCCCSEEEECCSCGG
T ss_pred             CeeE-ecHHHhccCCCCEEEECCCCCC
Confidence            2222 234444  48999999987654

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.49  E-value=0.00023  Score=64.63  Aligned_cols=84  Identities=13%  Similarity=0.239  Sum_probs=58.5

Q ss_pred             CCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCC
Q 018760           12 PGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR   91 (350)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~   91 (350)
                      -||.||.+.+.    ...     .+. ||.|||+|.+|.+++..|+..|. .+|+++|+++++++.    +.+      .
T Consensus        93 TD~~G~~~~l~----~~~-----~~~-~vliiGaGg~a~ai~~~L~~~G~-~~I~v~nR~~~ka~~----la~------~  151 (253)
T 3u62_A           93 TDWVGVVKSLE----GVE-----VKE-PVVVVGAGGAARAVIYALLQMGV-KDIWVVNRTIERAKA----LDF------P  151 (253)
T ss_dssp             CHHHHHHHHTT----TCC-----CCS-SEEEECCSHHHHHHHHHHHHTTC-CCEEEEESCHHHHHT----CCS------S
T ss_pred             chHHHHHHHHH----hcC-----CCC-eEEEECcHHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHH----HHH------H
Confidence            46766666664    321     244 99999999999999999999885 689999999876653    221      1


Q ss_pred             ceEEEcCCc-cccCCCCEEEEecCCC
Q 018760           92 TKILASVDY-AVTAGSDLCIVTAGAR  116 (350)
Q Consensus        92 ~~v~~t~~~-~al~~aDiVIi~~g~~  116 (350)
                      .......+. +.++++|+||.+....
T Consensus       152 ~~~~~~~~~~~~~~~aDiVInatp~g  177 (253)
T 3u62_A          152 VKIFSLDQLDEVVKKAKSLFNTTSVG  177 (253)
T ss_dssp             CEEEEGGGHHHHHHTCSEEEECSSTT
T ss_pred             cccCCHHHHHhhhcCCCEEEECCCCC
Confidence            122223344 4578999999986443

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.47  E-value=0.00033  Score=61.30  Aligned_cols=102  Identities=24%  Similarity=0.352  Sum_probs=67.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCCE
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSDL  108 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aDi  108 (350)
                      ++|||.|+|| |.+|+.++..|+..+.  +|++++++++++...    .      ...++...  +|   . ++++++|+
T Consensus         3 ~m~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~----~------~~~~~~~~Dl~d~~~~~~~~~~~d~   70 (227)
T 3dhn_A            3 KVKKIVLIGASGFVGSALLNEALNRGF--EVTAVVRHPEKIKIE----N------EHLKVKKADVSSLDEVCEVCKGADA   70 (227)
T ss_dssp             CCCEEEEETCCHHHHHHHHHHHHTTTC--EEEEECSCGGGCCCC----C------TTEEEECCCTTCHHHHHHHHTTCSE
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEEcCcccchhc----c------CceEEEEecCCCHHHHHHHhcCCCE
Confidence            3579999998 9999999999999984  999999998765421    0      12222211  12   2 35789999


Q ss_pred             EEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          109 CIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       109 VIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ||.+++.....    .+++..|+...+.+++.+.+....- +|.+|
T Consensus        71 vi~~a~~~~~~----~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~S  111 (227)
T 3dhn_A           71 VISAFNPGWNN----PDIYDETIKVYLTIIDGVKKAGVNR-FLMVG  111 (227)
T ss_dssp             EEECCCC----------CCSHHHHHHHHHHHHHHHTTCSE-EEEEC
T ss_pred             EEEeCcCCCCC----hhHHHHHHHHHHHHHHHHHHhCCCE-EEEeC
Confidence            99998754211    1234457777788888887765443 44544

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.47  E-value=0.00028  Score=63.81  Aligned_cols=74  Identities=22%  Similarity=0.324  Sum_probs=54.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc-------------------cchHHHHHHHHHHhhcCCCceEEEc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA-------------------DKLRGEMLDLQHAAAFLPRTKILAS   97 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~v~~t   97 (350)
                      ..||+|||+|.+|+.++..|+..|+ .+|+|+|.+.                   .|++..+..+....   +..++...
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv-~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n---p~~~v~~~  106 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGV-GNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN---PHIAITPV  106 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC---TTSEEEEE
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCC-CeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC---CCcEEEEE
Confidence            4689999999999999999999996 6999999987                   67776666665543   33444432


Q ss_pred             C-C-----c-cccCCCCEEEEecC
Q 018760           98 V-D-----Y-AVTAGSDLCIVTAG  114 (350)
Q Consensus        98 ~-~-----~-~al~~aDiVIi~~g  114 (350)
                      . +     . +.++++|+||.+..
T Consensus       107 ~~~~~~~~~~~~~~~~DvVi~~~d  130 (249)
T 1jw9_B          107 NALLDDAELAALIAEHDLVLDCTD  130 (249)
T ss_dssp             CSCCCHHHHHHHHHTSSEEEECCS
T ss_pred             eccCCHhHHHHHHhCCCEEEEeCC
Confidence            1 1     1 24689999999864

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=97.46  E-value=0.00086  Score=62.58  Aligned_cols=103  Identities=15%  Similarity=0.159  Sum_probs=68.9

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCC
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGS  106 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~a  106 (350)
                      ..+.+||.|+|| |.+|++++..|+..|.  +|+++|++++.           .    ...+...  +|   . ++++++
T Consensus        16 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~-----------~----~~~~~~~Dl~d~~~~~~~~~~~   78 (347)
T 4id9_A           16 PRGSHMILVTGSAGRVGRAVVAALRTQGR--TVRGFDLRPSG-----------T----GGEEVVGSLEDGQALSDAIMGV   78 (347)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTC--CEEEEESSCCS-----------S----CCSEEESCTTCHHHHHHHHTTC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCC-----------C----CccEEecCcCCHHHHHHHHhCC
Confidence            345689999999 9999999999999985  89999998764           0    1111111  12   2 357899


Q ss_pred             CEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          107 DLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       107 DiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |+||.+++..........+.+..|+.-...+++.+.+..... +|.+|
T Consensus        79 d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~V~~S  125 (347)
T 4id9_A           79 SAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRR-FVFAS  125 (347)
T ss_dssp             SEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSE-EEEEE
T ss_pred             CEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCe-EEEEC
Confidence            999999875433323335667778888888888888765444 44444

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.46  E-value=0.00029  Score=67.00  Aligned_cols=76  Identities=16%  Similarity=0.157  Sum_probs=55.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ...+|+|||+|.+|...+..|+...-+.+|.++|+++++++..+..+...    ...++....+. +++++||+||++..
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~----~g~~~~~~~~~~eav~~aDiVi~aTp  203 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEY----SGLTIRRASSVAEAVKGVDIITTVTA  203 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTC----TTCEEEECSSHHHHHTTCSEEEECCC
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc----cCceEEEeCCHHHHHhcCCEEEEecc
Confidence            45699999999999999887765433479999999998887655444321    12345555566 57899999999864


Q ss_pred             C
Q 018760          115 A  115 (350)
Q Consensus       115 ~  115 (350)
                      .
T Consensus       204 s  204 (350)
T 1x7d_A          204 D  204 (350)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.43  E-value=0.00059  Score=55.02  Aligned_cols=68  Identities=22%  Similarity=0.334  Sum_probs=46.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----c-ccCCCCEE
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----A-VTAGSDLC  109 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~-al~~aDiV  109 (350)
                      +++|.|+|+|.+|..++..|...+.  +|+++|.++++++.    +...     ...+...  ++.    + .+.++|+|
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~--~v~~~d~~~~~~~~----~~~~-----~~~~~~~d~~~~~~l~~~~~~~~d~v   74 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGH--EVLAVDINEEKVNA----YASY-----ATHAVIANATEENELLSLGIRNFEYV   74 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC--CCEEEESCHHHHHT----TTTT-----CSEEEECCTTCHHHHHTTTGGGCSEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH----HHHh-----CCEEEEeCCCCHHHHHhcCCCCCCEE
Confidence            3579999999999999999999885  89999998765542    1111     1122211  122    2 26789999


Q ss_pred             EEecCC
Q 018760          110 IVTAGA  115 (350)
Q Consensus       110 Ii~~g~  115 (350)
                      |++.+.
T Consensus        75 i~~~~~   80 (144)
T 2hmt_A           75 IVAIGA   80 (144)
T ss_dssp             EECCCS
T ss_pred             EECCCC
Confidence            999764

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.42  E-value=9.4e-05  Score=68.73  Aligned_cols=92  Identities=18%  Similarity=0.187  Sum_probs=60.9

Q ss_pred             CccchhhhhhccccCCC-CCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCC
Q 018760           13 GGLDLTQTFFKPINHAA-PPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR   91 (350)
Q Consensus        13 ~~~~~~~~~~~~~~~~~-~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~   91 (350)
                      |+.||.+.+.    ... .   ..+.++|+|||+|.+|.+++..|+..|. .+|+++|+++++++..+..+..   . ..
T Consensus       123 d~~G~~~~l~----~~~~~---~l~~~~vlVlGaGg~g~aia~~L~~~G~-~~V~v~nR~~~ka~~la~~~~~---~-~~  190 (297)
T 2egg_A          123 DGLGYVQALE----EEMNI---TLDGKRILVIGAGGGARGIYFSLLSTAA-ERIDMANRTVEKAERLVREGDE---R-RS  190 (297)
T ss_dssp             HHHHHHHHHH----HHTTC---CCTTCEEEEECCSHHHHHHHHHHHTTTC-SEEEEECSSHHHHHHHHHHSCS---S-SC
T ss_pred             CHHHHHHHHH----HhCCC---CCCCCEEEEECcHHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHhhh---c-cC
Confidence            5555555553    332 2   2345689999999999999999998885 5899999998877644332211   0 00


Q ss_pred             ceEEEcCCc-cccCCCCEEEEecCCCc
Q 018760           92 TKILASVDY-AVTAGSDLCIVTAGARQ  117 (350)
Q Consensus        92 ~~v~~t~~~-~al~~aDiVIi~~g~~~  117 (350)
                       .+....+. +.+.++|+||.+.+.+.
T Consensus       191 -~~~~~~~~~~~~~~aDivIn~t~~~~  216 (297)
T 2egg_A          191 -AYFSLAEAETRLAEYDIIINTTSVGM  216 (297)
T ss_dssp             -CEECHHHHHHTGGGCSEEEECSCTTC
T ss_pred             -ceeeHHHHHhhhccCCEEEECCCCCC
Confidence             22211233 56789999999987554

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=97.40  E-value=0.00013  Score=68.01  Aligned_cols=107  Identities=19%  Similarity=0.240  Sum_probs=65.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCCE
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSDL  108 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aDi  108 (350)
                      ++|||.|+|| |.+|++++..|+..|.  +|+++++++++.+.    +.+.     ...+...  +|   . ++++++|+
T Consensus        12 ~~M~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~----l~~~-----~~~~~~~Dl~d~~~~~~~~~~~d~   80 (342)
T 2x4g_A           12 AHVKYAVLGATGLLGHHAARAIRAAGH--DLVLIHRPSSQIQR----LAYL-----EPECRVAEMLDHAGLERALRGLDG   80 (342)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECTTSCGGG----GGGG-----CCEEEECCTTCHHHHHHHTTTCSE
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecChHhhhh----hccC-----CeEEEEecCCCHHHHHHHHcCCCE
Confidence            4479999998 9999999999999884  99999998776542    2110     1222211  12   2 35789999


Q ss_pred             EEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          109 CIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       109 VIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ||.+++..........+.+..|+.-...+++.+.+..... +|.+|
T Consensus        81 vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~-~v~~S  125 (342)
T 2x4g_A           81 VIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPR-ILYVG  125 (342)
T ss_dssp             EEEC------------CHHHHHHHHHHHHHHHHHHHTCSC-EEEEC
T ss_pred             EEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCe-EEEEC
Confidence            9999875432112233455667777788888777764333 55554

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.39  E-value=0.0012  Score=57.54  Aligned_cols=93  Identities=14%  Similarity=0.267  Sum_probs=61.5

Q ss_pred             Ce-EEEEcC-ChhHHHHHHHHH-hcCCCCeEEEEeCCcc-chHHHHHHHHHHhhcCCCceEEEc--CCc----cccCCCC
Q 018760           38 TK-ISVIGT-GNVGMAIAQTIL-TQDFVEELALVDAKAD-KLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAGSD  107 (350)
Q Consensus        38 ~K-I~IIGA-G~vG~~~a~~l~-~~~~~~ev~L~D~~~~-~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~aD  107 (350)
                      || |.|+|| |.+|+.++..|+ ..|.  +|++++++++ +++.    +...   .....+...  +|.    ++++++|
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~--~V~~~~r~~~~~~~~----~~~~---~~~~~~~~~D~~d~~~~~~~~~~~d   75 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDM--HITLYGRQLKTRIPP----EIID---HERVTVIEGSFQNPGXLEQAVTNAE   75 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCC--EEEEEESSHHHHSCH----HHHT---STTEEEEECCTTCHHHHHHHHTTCS
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCc--eEEEEecCccccchh----hccC---CCceEEEECCCCCHHHHHHHHcCCC
Confidence            45 999998 999999999999 7885  9999999987 6653    2111   112233221  121    3578999


Q ss_pred             EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +||.++|..             |.. .+.+++.+.+..... +|++|
T Consensus        76 ~vv~~ag~~-------------n~~-~~~~~~~~~~~~~~~-iv~iS  107 (221)
T 3r6d_A           76 VVFVGAMES-------------GSD-MASIVKALSRXNIRR-VIGVS  107 (221)
T ss_dssp             EEEESCCCC-------------HHH-HHHHHHHHHHTTCCE-EEEEE
T ss_pred             EEEEcCCCC-------------Chh-HHHHHHHHHhcCCCe-EEEEe
Confidence            999998743             333 666777777655444 44444

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=97.37  E-value=0.00022  Score=66.69  Aligned_cols=71  Identities=11%  Similarity=0.210  Sum_probs=52.1

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhc-CCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQ-DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~-~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      ...++|+|||+|.+|..++..|+.. + +.+|.++|+++++++.    +.....   . ++....+. +++++||+||++
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g-~~~V~v~dr~~~~~~~----l~~~~~---~-~~~~~~~~~e~v~~aDiVi~a  203 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFS-FKEVRIWNRTKENAEK----FADTVQ---G-EVRVCSSVQEAVAGADVIITV  203 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCC-CSEEEEECSSHHHHHH----HHHHSS---S-CCEECSSHHHHHTTCSEEEEC
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCC-CcEEEEEcCCHHHHHH----HHHHhh---C-CeEEeCCHHHHHhcCCEEEEE
Confidence            3457999999999999999988876 5 3689999999887764    322211   0 23334566 568999999998


Q ss_pred             cC
Q 018760          113 AG  114 (350)
Q Consensus       113 ~g  114 (350)
                      ..
T Consensus       204 tp  205 (312)
T 2i99_A          204 TL  205 (312)
T ss_dssp             CC
T ss_pred             eC
Confidence            64

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.36  E-value=0.0014  Score=54.08  Aligned_cols=70  Identities=7%  Similarity=0.161  Sum_probs=47.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc-cchHHHHHHHHHHhhcCCCceEEEc--CC---c-c-ccCCCCE
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA-DKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-A-VTAGSDL  108 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~-~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~-al~~aDi  108 (350)
                      ..+|.|+|+|.+|+.++..|...+.  +|+++|.++ ++.+.    +.....  ....+...  ++   . + .+++||.
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~--~V~vid~~~~~~~~~----~~~~~~--~~~~~i~gd~~~~~~l~~a~i~~ad~   74 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQ--NVTVISNLPEDDIKQ----LEQRLG--DNADVIPGDSNDSSVLKKAGIDRCRA   74 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC--CEEEEECCCHHHHHH----HHHHHC--TTCEEEESCTTSHHHHHHHTTTTCSE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--CEEEEECCChHHHHH----HHHhhc--CCCeEEEcCCCCHHHHHHcChhhCCE
Confidence            4589999999999999999999885  899999984 54432    222111  12233321  12   1 2 3889999


Q ss_pred             EEEecC
Q 018760          109 CIVTAG  114 (350)
Q Consensus       109 VIi~~g  114 (350)
                      ||++.+
T Consensus        75 vi~~~~   80 (153)
T 1id1_A           75 ILALSD   80 (153)
T ss_dssp             EEECSS
T ss_pred             EEEecC
Confidence            999964

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.35  E-value=0.00018  Score=66.30  Aligned_cols=85  Identities=12%  Similarity=0.141  Sum_probs=57.2

Q ss_pred             CCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCC
Q 018760           12 PGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR   91 (350)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~   91 (350)
                      -||.||.+.+.    ....   ..+..++.|+|+|.+|.+++..|...|. .+|++++++.++++.    +...      
T Consensus       104 TD~~G~~~~L~----~~~~---~~~~k~vlvlGaGGaaraia~~L~~~G~-~~v~v~nRt~~ka~~----La~~------  165 (282)
T 3fbt_A          104 TDYIGFGKMLS----KFRV---EIKNNICVVLGSGGAARAVLQYLKDNFA-KDIYVVTRNPEKTSE----IYGE------  165 (282)
T ss_dssp             CHHHHHHHHHH----HTTC---CCTTSEEEEECSSTTHHHHHHHHHHTTC-SEEEEEESCHHHHHH----HCTT------
T ss_pred             CcHHHHHHHHH----HcCC---CccCCEEEEECCcHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHH----HHHh------
Confidence            45555555554    4333   3445699999999999999999999885 589999999887653    3221      


Q ss_pred             ceEEEcCCccccCCCCEEEEecCC
Q 018760           92 TKILASVDYAVTAGSDLCIVTAGA  115 (350)
Q Consensus        92 ~~v~~t~~~~al~~aDiVIi~~g~  115 (350)
                      .......+.+.+ ++|+||.+...
T Consensus       166 ~~~~~~~~l~~l-~~DivInaTp~  188 (282)
T 3fbt_A          166 FKVISYDELSNL-KGDVIINCTPK  188 (282)
T ss_dssp             SEEEEHHHHTTC-CCSEEEECSST
T ss_pred             cCcccHHHHHhc-cCCEEEECCcc
Confidence            122212233235 89999998643

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.35  E-value=0.00042  Score=60.52  Aligned_cols=98  Identities=18%  Similarity=0.242  Sum_probs=64.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC----c-cccCCCCEE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD----Y-AVTAGSDLC  109 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~----~-~al~~aDiV  109 (350)
                      |||.|+|| |.+|+.++..|+..|.  +|+++++++++++..           ....+...  +|    . ++++++|+|
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~-----------~~~~~~~~D~~d~~~~~~~~~~~~d~v   67 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDY--QIYAGARKVEQVPQY-----------NNVKAVHFDVDWTPEEMAKQLHGMDAI   67 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSC--EEEEEESSGGGSCCC-----------TTEEEEECCTTSCHHHHHTTTTTCSEE
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCccchhhc-----------CCceEEEecccCCHHHHHHHHcCCCEE
Confidence            69999998 9999999999999984  999999998765421           11222211  12    2 357899999


Q ss_pred             EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      |.+++.....      .+..|..-...+++.+.+.... .+|.+|-
T Consensus        68 i~~ag~~~~~------~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS  106 (219)
T 3dqp_A           68 INVSGSGGKS------LLKVDLYGAVKLMQAAEKAEVK-RFILLST  106 (219)
T ss_dssp             EECCCCTTSS------CCCCCCHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             EECCcCCCCC------cEeEeHHHHHHHHHHHHHhCCC-EEEEECc
Confidence            9998865422      1223555555666666665433 4555553

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=97.35  E-value=0.00036  Score=66.22  Aligned_cols=68  Identities=15%  Similarity=0.184  Sum_probs=49.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHH-hcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEE
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTIL-TQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIV  111 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~-~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi  111 (350)
                      +...++|+|||+|.||..++..+. ..|.  +|+.+|+++++.+. .   .. .    ...  ..++. +.+++||+|++
T Consensus       160 ~l~g~~vgIIG~G~IG~~vA~~l~~~~G~--~V~~~d~~~~~~~~-~---~~-~----g~~--~~~~l~ell~~aDvVil  226 (348)
T 2w2k_A          160 NPRGHVLGAVGLGAIQKEIARKAVHGLGM--KLVYYDVAPADAET-E---KA-L----GAE--RVDSLEELARRSDCVSV  226 (348)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCC--EEEEECSSCCCHHH-H---HH-H----TCE--ECSSHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHhcCC--EEEEECCCCcchhh-H---hh-c----CcE--EeCCHHHHhccCCEEEE
Confidence            445679999999999999999998 7775  89999998876542 1   11 1    112  23355 45889999999


Q ss_pred             ecC
Q 018760          112 TAG  114 (350)
Q Consensus       112 ~~g  114 (350)
                      +..
T Consensus       227 ~vp  229 (348)
T 2w2k_A          227 SVP  229 (348)
T ss_dssp             CCC
T ss_pred             eCC
Confidence            964

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=97.34  E-value=0.0011  Score=65.90  Aligned_cols=104  Identities=13%  Similarity=0.163  Sum_probs=68.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g  114 (350)
                      ++|||.|+|| |.+|+.++..|+..|.  +|+.++++..+.+.        ...  ...   ....++++++|+||.+++
T Consensus       146 k~m~VLVTGatG~IG~~l~~~L~~~G~--~V~~l~R~~~~~~~--------v~~--d~~---~~~~~~l~~~D~Vih~A~  210 (516)
T 3oh8_A          146 SPLTVAITGSRGLVGRALTAQLQTGGH--EVIQLVRKEPKPGK--------RFW--DPL---NPASDLLDGADVLVHLAG  210 (516)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSSCCTTC--------EEC--CTT---SCCTTTTTTCSEEEECCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCCccc--------eee--ccc---chhHHhcCCCCEEEECCC
Confidence            3789999998 9999999999999985  99999998765421        000  000   112356889999999987


Q ss_pred             CCcC---ccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          115 ARQI---AGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       115 ~~~~---~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ....   ......++...|+.-.+.+++.+.+...-..+|.+|
T Consensus       211 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~S  253 (516)
T 3oh8_A          211 EPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISAS  253 (516)
T ss_dssp             C-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred             CccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            5421   122345566678888888888744433223455554

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.32  E-value=0.00012  Score=67.34  Aligned_cols=116  Identities=13%  Similarity=0.134  Sum_probs=71.2

Q ss_pred             CCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCC
Q 018760           12 PGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPR   91 (350)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~   91 (350)
                      -||.||.+.+.    ....   ..+..++.|+|+|.+|.+++..|+..|. .+|++++++.++++..+    .      .
T Consensus        99 TD~~G~~~~L~----~~~~---~l~~k~vlvlGaGg~g~aia~~L~~~G~-~~v~v~~R~~~~a~~la----~------~  160 (277)
T 3don_A           99 TDGIGYVNGLK----QIYE---GIEDAYILILGAGGASKGIANELYKIVR-PTLTVANRTMSRFNNWS----L------N  160 (277)
T ss_dssp             CHHHHHHHHHH----HHST---TGGGCCEEEECCSHHHHHHHHHHHTTCC-SCCEEECSCGGGGTTCC----S------C
T ss_pred             ChHHHHHHHHH----HhCC---CcCCCEEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHH----H------h
Confidence            46667766664    3332   3345689999999999999999999885 58999999998776322    1      1


Q ss_pred             ceEEEcCCc-cccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEE-cCCcch
Q 018760           92 TKILASVDY-AVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV-ANPVDI  159 (350)
Q Consensus        92 ~~v~~t~~~-~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~-tNP~~~  159 (350)
                      .......+. +.++++|+||.+.+....+...        .+    +  ......|+.+++-+ +||...
T Consensus       161 ~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~--------~~----l--~~~~l~~~~~V~D~vY~P~~T  216 (277)
T 3don_A          161 INKINLSHAESHLDEFDIIINTTPAGMNGNTD--------SV----I--SLNRLASHTLVSDIVYNPYKT  216 (277)
T ss_dssp             CEEECHHHHHHTGGGCSEEEECCC-------C--------CS----S--CCTTCCSSCEEEESCCSSSSC
T ss_pred             cccccHhhHHHHhcCCCEEEECccCCCCCCCc--------CC----C--CHHHcCCCCEEEEecCCCCCC
Confidence            122212233 4578999999986432211100        00    0  12234577777665 588764

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=97.32  E-value=0.00028  Score=64.07  Aligned_cols=80  Identities=15%  Similarity=0.228  Sum_probs=57.1

Q ss_pred             hhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcC
Q 018760           19 QTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV   98 (350)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~   98 (350)
                      .||...+++...   ..+. ||+|||+|.+|.+++..|...+.  +|.++|+++++++.    +.+...    ..  . .
T Consensus       102 ~g~~~~l~~~~~---~l~~-~v~iiG~G~~g~~~a~~l~~~g~--~v~v~~r~~~~~~~----l~~~~~----~~--~-~  164 (263)
T 2d5c_A          102 PGFLEALKAGGI---PLKG-PALVLGAGGAGRAVAFALREAGL--EVWVWNRTPQRALA----LAEEFG----LR--A-V  164 (263)
T ss_dssp             HHHHHHHHHTTC---CCCS-CEEEECCSHHHHHHHHHHHHTTC--CEEEECSSHHHHHH----HHHHHT----CE--E-C
T ss_pred             HHHHHHHHHhCC---CCCC-eEEEECCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHH----HHHHhc----cc--h-h
Confidence            466666655543   3445 99999999999999999999885  89999999876653    332221    12  2 3


Q ss_pred             Cc-cccCCCCEEEEecCCC
Q 018760           99 DY-AVTAGSDLCIVTAGAR  116 (350)
Q Consensus        99 ~~-~al~~aDiVIi~~g~~  116 (350)
                      +. +. +++|+||++.+.+
T Consensus       165 ~~~~~-~~~Divi~~tp~~  182 (263)
T 2d5c_A          165 PLEKA-REARLLVNATRVG  182 (263)
T ss_dssp             CGGGG-GGCSEEEECSSTT
T ss_pred             hHhhc-cCCCEEEEccCCC
Confidence            44 45 8999999997644

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.31  E-value=0.0028  Score=56.52  Aligned_cols=120  Identities=15%  Similarity=0.146  Sum_probs=72.9

Q ss_pred             CCCCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc-
Q 018760           32 SPTKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT-  103 (350)
Q Consensus        32 ~~~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al-  103 (350)
                      ++..+.+++.|+|| |.+|..++..|++.|.  +|+++|+++++++....++....   ....+...  +|.+    .+ 
T Consensus         4 ~~~~~~k~vlITGas~giG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~   78 (253)
T 3qiv_A            4 SMRFENKVGIVTGSGGGIGQAYAEALAREGA--AVVVADINAEAAEAVAKQIVADG---GTAISVAVDVSDPESAKAMAD   78 (253)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CEEEEEECCTTSHHHHHHHHH
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHH
Confidence            34445568889998 9999999999999995  89999999988876665665322   11222211  1211    12 


Q ss_pred             ------CCCCEEEEecCCCc--Cc----cccH---HHHHHhhHH----HHHHHHhhhhccCCCeEEEEEcCCc
Q 018760          104 ------AGSDLCIVTAGARQ--IA----GESR---LNLLQRNLS----LFKAIIPPLVKYSPDCILLIVANPV  157 (350)
Q Consensus       104 ------~~aDiVIi~~g~~~--~~----g~~r---~~~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP~  157 (350)
                            ...|+||.++|...  ..    ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||++|-..
T Consensus        79 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~  150 (253)
T 3qiv_A           79 RTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRG-GGAIVNQSSTA  150 (253)
T ss_dssp             HHHHHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECC--
T ss_pred             HHHHHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCEEEEECCcc
Confidence                  27899999988621  11    1121   223444443    3666666666543 56677776543

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=97.31  E-value=0.00032  Score=65.66  Aligned_cols=116  Identities=13%  Similarity=0.132  Sum_probs=74.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh--cCCCceEEEc--CC---c-cccCCC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA--FLPRTKILAS--VD---Y-AVTAGS  106 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~--~~~~~~v~~t--~~---~-~al~~a  106 (350)
                      +++||.|+|| |.+|+.++..|+..|.  +|+.++++..........+.....  ......+...  +|   . ++++++
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  101 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV  101 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence            4579999998 9999999999999985  999999976544333333432210  0012333322  12   2 357899


Q ss_pred             CEEEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          107 DLCIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       107 DiVIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |+||.+++....+  .....+.+..|+.-...+++.+.+..... +|.+|
T Consensus       102 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~v~~S  150 (351)
T 3ruf_A          102 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQS-FTYAA  150 (351)
T ss_dssp             SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSE-EEEEE
T ss_pred             CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEe
Confidence            9999998753211  12234556778888888888888876544 44443

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=97.31  E-value=0.00043  Score=59.87  Aligned_cols=104  Identities=16%  Similarity=0.158  Sum_probs=67.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC---ccccCC--CCEE
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD---YAVTAG--SDLC  109 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~---~~al~~--aDiV  109 (350)
                      +.|||.|+|| |.+|+.++..|+..+...+|+++++++++ .       +     ....+. ..|   .+.++.  +|+|
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~-~-------~-----~~~~~~-~~D~~~~~~~~~~~~d~v   69 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-E-------H-----PRLDNP-VGPLAELLPQLDGSIDTA   69 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-C-------C-----TTEECC-BSCHHHHGGGCCSCCSEE
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc-c-------C-----CCceEE-eccccCHHHHHHhhhcEE
Confidence            3479999998 99999999999999854589999998764 1       0     011111 112   122222  8999


Q ss_pred             EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |.+++..........+....|......+++.+.+.... .+|.+|
T Consensus        70 i~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  113 (215)
T 2a35_A           70 FCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGAR-HYLVVS  113 (215)
T ss_dssp             EECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred             EECeeeccccCCCHHHHHHhhHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            99988653222344555667877788888887776443 355554

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=97.29  E-value=0.00066  Score=64.21  Aligned_cols=92  Identities=18%  Similarity=0.212  Sum_probs=59.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      +...++|+|||.|.||+.+|..+...|.  +|..+|+++++..              ...  ...+. +.+++||+|+++
T Consensus       168 ~l~gktiGIIGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~--------------~~~--~~~sl~ell~~aDvVil~  229 (340)
T 4dgs_A          168 SPKGKRIGVLGLGQIGRALASRAEAFGM--SVRYWNRSTLSGV--------------DWI--AHQSPVDLARDSDVLAVC  229 (340)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC--EEEEECSSCCTTS--------------CCE--ECSSHHHHHHTCSEEEEC
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEcCCccccc--------------Cce--ecCCHHHHHhcCCEEEEe
Confidence            4456899999999999999999988786  8999999875411              111  13355 568999999998


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      .....   ++        ..++.  .+.+....|++++|+++.-
T Consensus       230 vP~t~---~t--------~~li~--~~~l~~mk~gailIN~aRG  260 (340)
T 4dgs_A          230 VAASA---AT--------QNIVD--ASLLQALGPEGIVVNVARG  260 (340)
T ss_dssp             C---------------------C--HHHHHHTTTTCEEEECSCC
T ss_pred             CCCCH---HH--------HHHhh--HHHHhcCCCCCEEEECCCC
Confidence            64211   11        11110  1222334688999999743

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=97.29  E-value=0.0003  Score=66.44  Aligned_cols=63  Identities=16%  Similarity=0.260  Sum_probs=48.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      ....+||+|||+|.||+.+|..+...|.  +|..+|+++++..          .    ..  ...+. +.+++||+|+++
T Consensus       161 ~l~g~~vgIIG~G~iG~~vA~~l~~~G~--~V~~~dr~~~~~~----------g----~~--~~~~l~ell~~aDvVil~  222 (333)
T 3ba1_A          161 KFSGKRVGIIGLGRIGLAVAERAEAFDC--PISYFSRSKKPNT----------N----YT--YYGSVVELASNSDILVVA  222 (333)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTC--CEEEECSSCCTTC----------C----SE--EESCHHHHHHTCSEEEEC
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEECCCchhcc----------C----ce--ecCCHHHHHhcCCEEEEe
Confidence            3456799999999999999999998885  8999999876432          1    11  13455 568999999999


Q ss_pred             cC
Q 018760          113 AG  114 (350)
Q Consensus       113 ~g  114 (350)
                      ..
T Consensus       223 vP  224 (333)
T 3ba1_A          223 CP  224 (333)
T ss_dssp             SC
T ss_pred             cC
Confidence            64

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=97.28  E-value=0.00064  Score=63.57  Aligned_cols=73  Identities=12%  Similarity=0.185  Sum_probs=54.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ...+|+|||+|.+|...+..|.....+.+|.++|++  +++..+.++....    ..++... +. +++++||+||.+..
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~----g~~~~~~-~~~eav~~aDIVi~aT~  192 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRC----GVPARMA-APADIAAQADIVVTATR  192 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHH----TSCEEEC-CHHHHHHHCSEEEECCC
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhc----CCeEEEe-CHHHHHhhCCEEEEccC
Confidence            346899999999999999888775446799999999  6666666666432    2344445 65 67899999999864


Q ss_pred             C
Q 018760          115 A  115 (350)
Q Consensus       115 ~  115 (350)
                      .
T Consensus       193 s  193 (313)
T 3hdj_A          193 S  193 (313)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=97.22  E-value=0.0011  Score=62.29  Aligned_cols=140  Identities=14%  Similarity=0.125  Sum_probs=67.7

Q ss_pred             CCCCCCCccchhhhhhccccCCCCCC-------C-CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHH
Q 018760            7 GSSLGPGGLDLTQTFFKPINHAAPPS-------P-TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRG   77 (350)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~   77 (350)
                      .|.|-|++-|.++.-..+|..+.-..       + ..+.|||.|+|| |.+|+.++..|+..|. .+|+++++++.....
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~   86 (357)
T 2x6t_A            8 SSGLVPRGSGMKETAAAKFERQHMDSPDLGTGGGSGIEGRMIIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKF   86 (357)
T ss_dssp             ----------------------------------------CEEEETTTSHHHHHHHHHHHHTTC-CCEEEEECCSSGGGG
T ss_pred             ccCccccCCCccccCchhhhhhhccCCCccccccccCCCCEEEEECCCcHHHHHHHHHHHHCCC-cEEEEEecCCCcchh
Confidence            34567777777766555554433221       1 112478999999 9999999999999872 289999987653210


Q ss_pred             HHHHHHHHhhcCCCceEEEcCCcc-ccC-----CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEE
Q 018760           78 EMLDLQHAAAFLPRTKILASVDYA-VTA-----GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILL  151 (350)
Q Consensus        78 ~~~dl~~~~~~~~~~~v~~t~~~~-al~-----~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~vi  151 (350)
                        ..+..   ......+.-....+ .++     ++|+||.+++..........+.+..|+.-...+++.+.+...  .+|
T Consensus        87 --~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~--r~V  159 (357)
T 2x6t_A           87 --VNLVD---LNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFL  159 (357)
T ss_dssp             --GGTTT---SCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEE
T ss_pred             --hcccC---ceEeeecCcHHHHHHHHhhcccCCCCEEEECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC--eEE
Confidence              01111   00112222111122 233     599999998764332234456677788888888888877654  355


Q ss_pred             EEc
Q 018760          152 IVA  154 (350)
Q Consensus       152 v~t  154 (350)
                      .+|
T Consensus       160 ~~S  162 (357)
T 2x6t_A          160 YAS  162 (357)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            554

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.22  E-value=0.00054  Score=62.74  Aligned_cols=84  Identities=11%  Similarity=0.123  Sum_probs=58.4

Q ss_pred             CccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCc
Q 018760           13 GGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRT   92 (350)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~   92 (350)
                      ||.||.+.+.    ..+..    ...++.|+|+|.+|.+++..|...|. .+|++++++.++++..+.++.        .
T Consensus       103 D~~G~~~~l~----~~~~~----~~~~vlvlGaGgaarav~~~L~~~G~-~~i~v~nRt~~ka~~la~~~~--------~  165 (271)
T 1npy_A          103 DYIAIVKLIE----KYHLN----KNAKVIVHGSGGMAKAVVAAFKNSGF-EKLKIYARNVKTGQYLAALYG--------Y  165 (271)
T ss_dssp             HHHHHHHHHH----HTTCC----TTSCEEEECSSTTHHHHHHHHHHTTC-CCEEEECSCHHHHHHHHHHHT--------C
T ss_pred             CHHHHHHHHH----HhCCC----CCCEEEEECCcHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcC--------C
Confidence            5667776665    33321    23589999999999999999999885 589999999888775443331        1


Q ss_pred             eEEEcCCccccCCCCEEEEecCCC
Q 018760           93 KILASVDYAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        93 ~v~~t~~~~al~~aDiVIi~~g~~  116 (350)
                      .+.  .+.+ +.++|+||.+....
T Consensus       166 ~~~--~~~~-~~~~DivInaTp~g  186 (271)
T 1npy_A          166 AYI--NSLE-NQQADILVNVTSIG  186 (271)
T ss_dssp             EEE--SCCT-TCCCSEEEECSSTT
T ss_pred             ccc--hhhh-cccCCEEEECCCCC
Confidence            221  1223 57899999996543

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=97.22  E-value=0.00039  Score=61.47  Aligned_cols=107  Identities=11%  Similarity=0.168  Sum_probs=68.9

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCCEE
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSDLC  109 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aDiV  109 (350)
                      .++|.|+|| |.+|+.++..|+..|...+|+++++++++++...    ..     ...+...  +|   . +.++++|+|
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~----~~-----~~~~~~~D~~d~~~~~~~~~~~d~v   88 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA----YK-----NVNQEVVDFEKLDDYASAFQGHDVG   88 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG----GG-----GCEEEECCGGGGGGGGGGGSSCSEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc----cC-----CceEEecCcCCHHHHHHHhcCCCEE
Confidence            468999998 9999999999999985448999999887654211    00     1112111  11   2 357789999


Q ss_pred             EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |.++|.... .....+.+..|..-...+++.+.+.... .+|++|
T Consensus        89 i~~ag~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~iv~~S  131 (242)
T 2bka_A           89 FCCLGTTRG-KAGAEGFVRVDRDYVLKSAELAKAGGCK-HFNLLS  131 (242)
T ss_dssp             EECCCCCHH-HHHHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred             EECCCcccc-cCCcccceeeeHHHHHHHHHHHHHCCCC-EEEEEc
Confidence            999885421 1122344556776677777777765433 455555

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=97.19  E-value=0.012  Score=53.73  Aligned_cols=132  Identities=15%  Similarity=0.206  Sum_probs=76.0

Q ss_pred             hhhccccCCCCCCCCCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc-
Q 018760           20 TFFKPINHAAPPSPTKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS-   97 (350)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t-   97 (350)
                      -|...+...+.+....+.++|.|+|| |.+|..++..|++.|.  +|+++|+++++++....++.....  ....+... 
T Consensus         9 ~~~~~~~~~~~~~~~l~~k~vlITGasggiG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~D   84 (302)
T 1w6u_A            9 KFFSPLQKAMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQTG--NKVHAIQCD   84 (302)
T ss_dssp             HHSCCCCSCCSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECC
T ss_pred             cccccccCCCCCcccCCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcC--CceEEEEeC
Confidence            34444444443333344568999998 9999999999999985  899999998877655555554311  12222221 


Q ss_pred             -CCccc----c-------CCCCEEEEecCCCcC-c--ccc---HHHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760           98 -VDYAV----T-------AGSDLCIVTAGARQI-A--GES---RLNLLQRNL----SLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus        98 -~~~~a----l-------~~aDiVIi~~g~~~~-~--g~~---r~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                       +|.+.    +       ...|+||.++|.... +  ..+   -...+..|+    .+.+.+.+.+.+....+.+|++|.
T Consensus        85 l~~~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS  164 (302)
T 1w6u_A           85 VRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITT  164 (302)
T ss_dssp             TTCHHHHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence             12111    2       245999999885421 1  111   122333343    344445555543344566777754

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=97.19  E-value=0.0018  Score=60.89  Aligned_cols=116  Identities=12%  Similarity=0.099  Sum_probs=71.7

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHh--cCCCCeEEEEeCCccchHHHHH---HHHHHhhc-CCCceEEEc--CCc----c
Q 018760           35 KRHTKISVIGT-GNVGMAIAQTILT--QDFVEELALVDAKADKLRGEML---DLQHAAAF-LPRTKILAS--VDY----A  101 (350)
Q Consensus        35 ~~~~KI~IIGA-G~vG~~~a~~l~~--~~~~~ev~L~D~~~~~l~~~~~---dl~~~~~~-~~~~~v~~t--~~~----~  101 (350)
                      .++|||.|+|| |.+|++++..|+.  .|.  +|+++|++.........   .+...... .....+...  +|.    +
T Consensus         8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~   85 (362)
T 3sxp_A            8 LENQTILITGGAGFVGSNLAFHFQENHPKA--KVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRR   85 (362)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHCTTS--EEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHhhCCCC--eEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHH
Confidence            35679999998 9999999999999  674  99999986642110000   00000000 012233322  121    2


Q ss_pred             c-cCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          102 V-TAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       102 a-l~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      . ..++|+||.+++..........+.+..|+.-...+++.+.+....  +|++|
T Consensus        86 ~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~--~V~~S  137 (362)
T 3sxp_A           86 LEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK--VIYAS  137 (362)
T ss_dssp             HTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE--EEEEE
T ss_pred             hhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc--EEEeC
Confidence            2 578999999998543333445666777888888888888876544  55554

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=97.18  E-value=0.0087  Score=54.49  Aligned_cols=115  Identities=15%  Similarity=0.250  Sum_probs=67.2

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeC-CccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c-----
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDA-KADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T-----  103 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~-~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l-----  103 (350)
                      .+++.|+|| |.+|.+++..|++.|.  +|+++|+ ++++++....++....   ........  +|.++    +     
T Consensus        29 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~  103 (280)
T 4da9_A           29 RPVAIVTGGRRGIGLGIARALAASGF--DIAITGIGDAEGVAPVIAELSGLG---ARVIFLRADLADLSSHQATVDAVVA  103 (280)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCHHHHHHHHHHHHHTT---CCEEEEECCTTSGGGHHHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcC---CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            346788898 8999999999999995  8999996 6666665555554321   12222211  12211    2     


Q ss_pred             --CCCCEEEEecCCC---cCc--cccHH---HHHHhh----HHHHHHHHhhhhccC--CCeEEEEEcCC
Q 018760          104 --AGSDLCIVTAGAR---QIA--GESRL---NLLQRN----LSLFKAIIPPLVKYS--PDCILLIVANP  156 (350)
Q Consensus       104 --~~aDiVIi~~g~~---~~~--g~~r~---~~~~~n----~~i~~~i~~~i~~~~--p~a~viv~tNP  156 (350)
                        ...|++|.++|..   ..+  ..+..   ..+.-|    ..+.+.+.+.+.+..  +.+.||++|-.
T Consensus       104 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~  172 (280)
T 4da9_A          104 EFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSV  172 (280)
T ss_dssp             HHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_pred             HcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcch
Confidence              2789999999862   111  11221   122223    445566666666543  25667777643

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=97.18  E-value=0.0019  Score=60.19  Aligned_cols=110  Identities=15%  Similarity=0.166  Sum_probs=70.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc--cccCCCCEEEEe
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY--AVTAGSDLCIVT  112 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~--~al~~aDiVIi~  112 (350)
                      +++||.|+|| |.+|+.++..|+..|.  +|+++|++......   .+.+... .....+.. .|.  .++.++|+||.+
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~---~~~~~~~-~~~~~~~~-~D~~~~~~~~~d~vih~   98 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFTGRKR---NVEHWIG-HENFELIN-HDVVEPLYIEVDQIYHL   98 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCGG---GTGGGTT-CTTEEEEE-CCTTSCCCCCCSEEEEC
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHCCC--EEEEEeCCCccchh---hhhhhcc-CCceEEEe-CccCChhhcCCCEEEEC
Confidence            4579999999 9999999999999884  99999986543221   1111110 11234432 243  457899999999


Q ss_pred             cCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          113 AGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       113 ~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ++.....  .......+..|+.-...+++.+.+...  .+|.+|
T Consensus        99 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  140 (343)
T 2b69_A           99 ASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLAS  140 (343)
T ss_dssp             CSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             ccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--cEEEEC
Confidence            8754211  122344566788888888888777653  455554

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.18  E-value=0.0053  Score=56.51  Aligned_cols=97  Identities=19%  Similarity=0.246  Sum_probs=64.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      ..+.++|+|||+|.+|..++..+...|.  +|+.+|+++++++.    +.. .    ..+.....+. +.++++|+|+++
T Consensus       152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~--~V~~~dr~~~~~~~----~~~-~----g~~~~~~~~l~~~l~~aDvVi~~  220 (293)
T 3d4o_A          152 TIHGANVAVLGLGRVGMSVARKFAALGA--KVKVGARESDLLAR----IAE-M----GMEPFHISKAAQELRDVDVCINT  220 (293)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESSHHHHHH----HHH-T----TSEEEEGGGHHHHTTTCSEEEEC
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHhCCC--EEEEEECCHHHHHH----HHH-C----CCeecChhhHHHHhcCCCEEEEC
Confidence            3456799999999999999999988885  89999998865432    221 1    1222212344 458999999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc-CCcch
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA-NPVDI  159 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t-NP~~~  159 (350)
                      ...    +.-       |..       .+....|.+++|+++ +|.++
T Consensus       221 ~p~----~~i-------~~~-------~l~~mk~~~~lin~ar~~~~~  250 (293)
T 3d4o_A          221 IPA----LVV-------TAN-------VLAEMPSHTFVIDLASKPGGT  250 (293)
T ss_dssp             CSS----CCB-------CHH-------HHHHSCTTCEEEECSSTTCSB
T ss_pred             CCh----HHh-------CHH-------HHHhcCCCCEEEEecCCCCCC
Confidence            742    111       111       122335789999997 77665

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=97.17  E-value=0.0046  Score=50.53  Aligned_cols=107  Identities=11%  Similarity=0.127  Sum_probs=60.8

Q ss_pred             CCCeEEEEcC----ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-cCCCCEEE
Q 018760           36 RHTKISVIGT----GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-TAGSDLCI  110 (350)
Q Consensus        36 ~~~KI~IIGA----G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l~~aDiVI  110 (350)
                      ++.+|+|||+    |.+|..++..|...|+  +  ++++|+.+.+     +   .    ..+  ...+.++ .+.+|+++
T Consensus        13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~--~--V~~vnp~~~~-----i---~----G~~--~~~s~~el~~~vDlvi   74 (138)
T 1y81_A           13 EFRKIALVGASKNPAKYGNIILKDLLSKGF--E--VLPVNPNYDE-----I---E----GLK--CYRSVRELPKDVDVIV   74 (138)
T ss_dssp             -CCEEEEETCCSCTTSHHHHHHHHHHHTTC--E--EEEECTTCSE-----E---T----TEE--CBSSGGGSCTTCCEEE
T ss_pred             CCCeEEEEeecCCCCCHHHHHHHHHHHCCC--E--EEEeCCCCCe-----E---C----Cee--ecCCHHHhCCCCCEEE
Confidence            4679999999    9999999999999886  5  5555554211     1   1    112  2334544 45799999


Q ss_pred             EecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecC
Q 018760          111 VTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGT  180 (350)
Q Consensus       111 i~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~  180 (350)
                      ++..                .+.+.++++.+.+....++++..+.-..-+...+ +..|+   +++|=.|
T Consensus        75 i~vp----------------~~~v~~v~~~~~~~g~~~i~~~~~~~~~~l~~~a-~~~Gi---~~igpnc  124 (138)
T 1y81_A           75 FVVP----------------PKVGLQVAKEAVEAGFKKLWFQPGAESEEIRRFL-EKAGV---EYSFGRC  124 (138)
T ss_dssp             ECSC----------------HHHHHHHHHHHHHTTCCEEEECTTSCCHHHHHHH-HHHTC---EEECSCC
T ss_pred             EEeC----------------HHHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHH-HHCCC---EEEcCCc
Confidence            9953                1333444444444555664443333222233333 33455   5665434

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.17  E-value=0.00098  Score=62.50  Aligned_cols=72  Identities=10%  Similarity=0.058  Sum_probs=54.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ...+|+|||+|.+|...+..|+....+.+|.++|+++++++..+..+....     ..+. ..+. +++ ++|+|+++..
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~-----~~~~-~~~~~e~v-~aDvVi~aTp  196 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRG-----ISAS-VQPAEEAS-RCDVLVTTTP  196 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTT-----CCEE-ECCHHHHT-SSSEEEECCC
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcC-----ceEE-ECCHHHHh-CCCEEEEeeC
Confidence            456999999999999999888874435799999999998886665554311     2344 4565 568 9999999864

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=97.15  E-value=0.00067  Score=64.53  Aligned_cols=110  Identities=15%  Similarity=0.051  Sum_probs=72.5

Q ss_pred             CCCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCC
Q 018760           33 PTKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAG  105 (350)
Q Consensus        33 ~~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~  105 (350)
                      +..++|||.|+|| |.+|+.++..|+..+.  +|+++|+++++...    ...     ....+...  +|   . +++++
T Consensus        25 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~----~~~-----~~v~~~~~Dl~d~~~~~~~~~~   93 (379)
T 2c5a_A           25 WPSENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHMT----EDM-----FCDEFHLVDLRVMENCLKVTEG   93 (379)
T ss_dssp             CTTSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSSC----GGG-----TCSEEEECCTTSHHHHHHHHTT
T ss_pred             ccccCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEECCCccchh----hcc-----CCceEEECCCCCHHHHHHHhCC
Confidence            4446789999999 9999999999999884  99999998754321    000     12233221  12   2 34789


Q ss_pred             CCEEEEecCCCcCc---cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          106 SDLCIVTAGARQIA---GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       106 aDiVIi~~g~~~~~---g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +|+||.+++.....   .....+.+..|+.-...+++.+.+..... +|.+|
T Consensus        94 ~d~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~-~V~~S  144 (379)
T 2c5a_A           94 VDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKR-FFYAS  144 (379)
T ss_dssp             CSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSE-EEEEE
T ss_pred             CCEEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEe
Confidence            99999998754221   12345566678888888888887765443 44444

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.15  E-value=0.00098  Score=63.75  Aligned_cols=117  Identities=22%  Similarity=0.327  Sum_probs=75.6

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC----ccc----hHHHHHHHHHHhhcCCCceEEEcCCc-cccCC
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK----ADK----LRGEMLDLQHAAAFLPRTKILASVDY-AVTAG  105 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~----~~~----l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~  105 (350)
                      .+..||+|+|||.+|..++..|+..|. ++|+++|++    .++    +......+.+...  . ..  ...+. +++++
T Consensus       190 l~~~kVVv~GAGaAG~~iAkll~~~G~-~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~--~-~~--~~~~L~eav~~  263 (388)
T 1vl6_A          190 IEEVKVVVNGIGAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARITN--P-ER--LSGDLETALEG  263 (388)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHTSC--T-TC--CCSCHHHHHTT
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhCCC-CeEEEEECCCcccCCCcccccCHHHHHHHHhhh--c-cC--chhhHHHHHcc
Confidence            356799999999999999999998885 799999998    665    3322333333211  1 00  12345 68999


Q ss_pred             CCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch-HHHHHHHHhCCCCCcEeeec
Q 018760          106 SDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI-LTYVAWKLSGLPSNRVIGSG  179 (350)
Q Consensus       106 aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~-~~~~~~~~sg~~~~rviG~g  179 (350)
                      +|++|=+.+ |   +.-       +    +++.+.|.   ++.+|+-.+||..- ..+.+.+. |   ..+|++|
T Consensus       264 ADVlIG~Sa-p---~l~-------t----~emVk~Ma---~~pIIfalSNPt~E~~p~~a~~~-g---~~i~atG  316 (388)
T 1vl6_A          264 ADFFIGVSR-G---NIL-------K----PEWIKKMS---RKPVIFALANPVPEIDPELAREA-G---AFIVATG  316 (388)
T ss_dssp             CSEEEECSC-S---SCS-------C----HHHHTTSC---SSCEEEECCSSSCSSCHHHHHHT-T---CSEEEES
T ss_pred             CCEEEEeCC-C---Ccc-------C----HHHHHhcC---CCCEEEEcCCCCCCCCHHHHHHh-c---CeEEEeC
Confidence            999888754 3   211       1    22333443   56788888999743 44445443 3   3788887

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=97.13  E-value=0.00069  Score=62.36  Aligned_cols=105  Identities=12%  Similarity=0.123  Sum_probs=66.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      +|||.|+|| |.+|+.++..|+..|.  +|+.++++++..+     +......  ..++. ..+. ++++++|+||.+++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-----~~~~~~~--~~Dl~-~~~~~~~~~~~d~Vih~a~   71 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN--TPIILTRSIGNKA-----INDYEYR--VSDYT-LEDLINQLNDVDAVVHLAA   71 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCC----------CCEEE--ECCCC-HHHHHHHTTTCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCCccc-----CCceEEE--Ecccc-HHHHHHhhcCCCEEEEccc
Confidence            369999998 9999999999999985  9999999854322     2211100  11111 1123 46889999999987


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      .....  ...+....|+.-.+.+++.+.+....- +|.+|
T Consensus        72 ~~~~~--~~~~~~~~n~~~~~~ll~a~~~~~~~r-~v~~S  108 (311)
T 3m2p_A           72 TRGSQ--GKISEFHDNEILTQNLYDACYENNISN-IVYAS  108 (311)
T ss_dssp             CCCSS--SCGGGTHHHHHHHHHHHHHHHHTTCCE-EEEEE
T ss_pred             cCCCC--ChHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEc
Confidence            54322  222234557777788888888766543 44444

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=97.11  E-value=0.00066  Score=63.94  Aligned_cols=111  Identities=16%  Similarity=0.317  Sum_probs=73.6

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhc-CCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccCCCCE
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQ-DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAGSDL  108 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~-~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~aDi  108 (350)
                      .++|.|+|| |.+|+.++..|+.. |. .+|++++++++++......+..     ...++...  +|.    ++++++|+
T Consensus        21 ~k~vlVTGatG~iG~~l~~~L~~~~g~-~~V~~~~r~~~~~~~~~~~~~~-----~~v~~~~~Dl~d~~~l~~~~~~~D~   94 (344)
T 2gn4_A           21 NQTILITGGTGSFGKCFVRKVLDTTNA-KKIIVYSRDELKQSEMAMEFND-----PRMRFFIGDVRDLERLNYALEGVDI   94 (344)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHCCC-SEEEEEESCHHHHHHHHHHHCC-----TTEEEEECCTTCHHHHHHHTTTCSE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhhCCC-CEEEEEECChhhHHHHHHHhcC-----CCEEEEECCCCCHHHHHHHHhcCCE
Confidence            468999998 99999999999988 73 3899999998766533322221     12233222  122    35789999


Q ss_pred             EEEecCCCcCcc--ccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          109 CIVTAGARQIAG--ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       109 VIi~~g~~~~~g--~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ||.+++....+.  ....+.+..|+.-...+++.+.+....- +|.+|
T Consensus        95 Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~-~V~~S  141 (344)
T 2gn4_A           95 CIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQ-VIALS  141 (344)
T ss_dssp             EEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSE-EEEEC
T ss_pred             EEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCE-EEEec
Confidence            999987653221  1234566778888888888887765433 45554

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.11  E-value=0.0066  Score=55.93  Aligned_cols=115  Identities=16%  Similarity=0.201  Sum_probs=73.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c-----
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T-----  103 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l-----  103 (350)
                      +.++|.|+|| |.+|..++..|++.|.  +|++.|+++++++....++....   ....+...  +|.++    +     
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~  104 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLRGQG---FDAHGVVCDVRHLDEMVRLADEAFR  104 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHHHHH
Confidence            3457899998 8999999999999995  89999999988876666665432   12222211  12211    2     


Q ss_pred             --CCCCEEEEecCCCcCc---cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 --AGSDLCIVTAGARQIA---GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 --~~aDiVIi~~g~~~~~---g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                        ...|++|.++|.....   ..+.   ...+.-|    ..+.+.+.+.+.+..+.+.||++|.
T Consensus       105 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS  168 (301)
T 3tjr_A          105 LLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTAS  168 (301)
T ss_dssp             HHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             hCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCc
Confidence              2789999999865321   1121   2223333    4456666666666555677777764

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.10  E-value=0.0049  Score=55.68  Aligned_cols=68  Identities=9%  Similarity=0.213  Sum_probs=50.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccccCCCCEEEEecC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAVTAGSDLCIVTAG  114 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~al~~aDiVIi~~g  114 (350)
                      +|||.|+|||.+|+.++..|+..|.  +|+.+++++++...    +...     ..++...  +|.+ ++++|+||.+++
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~----~~~~-----~~~~~~~D~~d~~-~~~~d~vi~~a~   72 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGW--RIIGTSRNPDQMEA----IRAS-----GAEPLLWPGEEPS-LDGVTHLLISTA   72 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTC--EEEEEESCGGGHHH----HHHT-----TEEEEESSSSCCC-CTTCCEEEECCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCC--EEEEEEcChhhhhh----HhhC-----CCeEEEecccccc-cCCCCEEEECCC
Confidence            4799999999999999999999985  99999998876542    2221     2233221  1234 889999999987


Q ss_pred             CC
Q 018760          115 AR  116 (350)
Q Consensus       115 ~~  116 (350)
                      ..
T Consensus        73 ~~   74 (286)
T 3ius_A           73 PD   74 (286)
T ss_dssp             CB
T ss_pred             cc
Confidence            54

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=97.04  E-value=0.00095  Score=62.80  Aligned_cols=68  Identities=19%  Similarity=0.293  Sum_probs=50.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      +...+||+|||+|.||..++..+...|.  +|+.+|+++++.+.    ...   .  .  +... +. +.+++||+|+++
T Consensus       152 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~----~~~---~--g--~~~~-~l~e~l~~aDvVi~~  217 (330)
T 2gcg_A          152 GLTQSTVGIIGLGRIGQAIARRLKPFGV--QRFLYTGRQPRPEE----AAE---F--Q--AEFV-STPELAAQSDFIVVA  217 (330)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTC--CEEEEESSSCCHHH----HHT---T--T--CEEC-CHHHHHHHCSEEEEC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC--EEEEECCCCcchhH----HHh---c--C--ceeC-CHHHHHhhCCEEEEe
Confidence            3456799999999999999999988885  89999998875542    111   1  1  2223 55 568999999999


Q ss_pred             cCC
Q 018760          113 AGA  115 (350)
Q Consensus       113 ~g~  115 (350)
                      ...
T Consensus       218 vp~  220 (330)
T 2gcg_A          218 CSL  220 (330)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            753

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=97.04  E-value=0.0087  Score=53.47  Aligned_cols=115  Identities=18%  Similarity=0.215  Sum_probs=70.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc----CCcc---------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS----VDYA---------  101 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t----~~~~---------  101 (350)
                      +.+++.|+|| |.+|..++..|++.|.  +|+++|+++++++....++.....  ........    ++.+         
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   86 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGA--TVILLGRNEEKLRQVASHINEETG--RQPQWFILDLLTCTSENCQQLAQRI   86 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHS--CCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcC--CCceEEEEecccCCHHHHHHHHHHH
Confidence            3457888998 8999999999999996  899999999888766666654321  11222211    1211         


Q ss_pred             --ccCCCCEEEEecCCCc--Cc--cccHH---HHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          102 --VTAGSDLCIVTAGARQ--IA--GESRL---NLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       102 --al~~aDiVIi~~g~~~--~~--g~~r~---~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                        .+...|++|.++|...  .+  ..+..   ..+.-|    ..+.+.+.+.|.+.. .+.||++|-
T Consensus        87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS  152 (252)
T 3f1l_A           87 AVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSD-AGSLVFTSS  152 (252)
T ss_dssp             HHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECC
T ss_pred             HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCC-CCEEEEECC
Confidence              1237899999998632  12  12221   223334    345556666666543 455666654

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=97.03  E-value=0.00094  Score=63.03  Aligned_cols=108  Identities=19%  Similarity=0.322  Sum_probs=70.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhc-CCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--C-Cc----cccCCC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQ-DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--V-DY----AVTAGS  106 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~-~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~-~~----~al~~a  106 (350)
                      ++|||.|+|| |.+|+.++..|+.. +.  +|+.+|++.+++..    +...    ...++...  + +.    ++++++
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~----~~~~----~~v~~~~~Dl~~d~~~~~~~~~~~   92 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTDW--EVFGMDMQTDRLGD----LVKH----ERMHFFEGDITINKEWVEYHVKKC   92 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSSC--EEEEEESCCTTTGG----GGGS----TTEEEEECCTTTCHHHHHHHHHHC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCC--EEEEEeCChhhhhh----hccC----CCeEEEeCccCCCHHHHHHHhccC
Confidence            3579999998 99999999999988 64  99999998866542    1110    12233321  1 21    246789


Q ss_pred             CEEEEecCCCcCcc--ccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          107 DLCIVTAGARQIAG--ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       107 DiVIi~~g~~~~~g--~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      |+||.+++......  ....+.+..|+.-...+++.+.+.+  ..+|.+|-
T Consensus        93 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~--~~~v~~SS  141 (372)
T 3slg_A           93 DVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST  141 (372)
T ss_dssp             SEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT--CEEEEECC
T ss_pred             CEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC--CcEEEeCc
Confidence            99999987543211  1233455667666677777777766  34556653

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=97.02  E-value=0.0096  Score=53.44  Aligned_cols=117  Identities=14%  Similarity=0.161  Sum_probs=72.2

Q ss_pred             CCCCeEEEEcC-C-hhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c---
Q 018760           35 KRHTKISVIGT-G-NVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T---  103 (350)
Q Consensus        35 ~~~~KI~IIGA-G-~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l---  103 (350)
                      .+.+++.|+|+ | .+|..++..|++.|.  +|+++|+++++++....++....  .....+...  +|.+.    +   
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~   95 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGA--DVVISDYHERRLGETRDQLADLG--LGRVEAVVCDVTSTEAVDALITQT   95 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTC--SSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC--CCceEEEEeCCCCHHHHHHHHHHH
Confidence            34567889999 7 599999999999995  89999999988776555554321  112232221  12111    1   


Q ss_pred             ----CCCCEEEEecCCCcCc---cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 ----AGSDLCIVTAGARQIA---GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 ----~~aDiVIi~~g~~~~~---g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                          ...|+||.++|.....   ..+.   ...+.-|    ..+.+.+.+.+.+....+.||++|-
T Consensus        96 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  161 (266)
T 3o38_A           96 VEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNAS  161 (266)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECC
T ss_pred             HHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence                3679999999864321   1122   1223333    4455666666666556677777754

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=97.02  E-value=0.0013  Score=58.78  Aligned_cols=34  Identities=9%  Similarity=0.263  Sum_probs=30.6

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeC
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDA   70 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~   70 (350)
                      ...|||+|||+|.||.+++..|...|.  +|+.+|.
T Consensus         4 ~~~mkI~IIG~G~~G~sLA~~L~~~G~--~V~~~~~   37 (232)
T 3dfu_A            4 APRLRVGIFDDGSSTVNMAEKLDSVGH--YVTVLHA   37 (232)
T ss_dssp             CCCCEEEEECCSCCCSCHHHHHHHTTC--EEEECSS
T ss_pred             CCCcEEEEEeeCHHHHHHHHHHHHCCC--EEEEecC
Confidence            345899999999999999999999986  8999988

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=97.02  E-value=0.011  Score=53.53  Aligned_cols=115  Identities=17%  Similarity=0.245  Sum_probs=68.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCC------------ccchHHHHHHHHHHhhcCCCceEEEc--CCc
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAK------------ADKLRGEMLDLQHAAAFLPRTKILAS--VDY  100 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~------------~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~  100 (350)
                      +.+++.|+|| |.+|..++..|++.|.  +|+++|++            +++++.....+....   ........  +|.
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~   86 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA--DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG---SRIVARQADVRDR   86 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT---CCEEEEECCTTCH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEecccccccccccccchHHHHHHHHHHHhcC---CeEEEEeCCCCCH
Confidence            3457889998 8999999999999995  89999987            444443333333221   12222221  121


Q ss_pred             c----cc-------CCCCEEEEecCCCcCcc-cc-HHHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          101 A----VT-------AGSDLCIVTAGARQIAG-ES-RLNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       101 ~----al-------~~aDiVIi~~g~~~~~g-~~-r~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +    .+       ...|++|.++|...... .+ -...+.-|    ..+.+.+.+.+.+....+.||++|-
T Consensus        87 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  158 (278)
T 3sx2_A           87 ESLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISS  158 (278)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence            1    12       27899999998653221 11 12223334    4455666666666555677777764

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.02  E-value=0.012  Score=53.38  Aligned_cols=115  Identities=12%  Similarity=0.170  Sum_probs=72.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc-----
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT-----  103 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al-----  103 (350)
                      +.+++.|+|+ |.+|..++..|++.|.  +|++.|+++++++....++....   ........  +|.+    .+     
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~d~~~v~~~~~~~~~  105 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGA--QVAVAARHSDALQVVADEIAGVG---GKALPIRCDVTQPDQVRGMLDQMTG  105 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            3457889998 8999999999999995  89999999988876666665422   12222211  1211    12     


Q ss_pred             --CCCCEEEEecCCCcCc---cccHH---HHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 --AGSDLCIVTAGARQIA---GESRL---NLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 --~~aDiVIi~~g~~~~~---g~~r~---~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                        ...|++|.++|.....   ..+..   ..+.-|    ..+.+.+.+.+.+....+.||+++.
T Consensus       106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS  169 (276)
T 3r1i_A          106 ELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTAS  169 (276)
T ss_dssp             HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECc
Confidence              2789999998864321   11221   122333    3455666666666554566777653

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=97.01  E-value=0.013  Score=53.88  Aligned_cols=114  Identities=12%  Similarity=0.156  Sum_probs=67.7

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCC------------ccchHHHHHHHHHHhhcCCCceEEEc--CCcc
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAK------------ADKLRGEMLDLQHAAAFLPRTKILAS--VDYA  101 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~------------~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~  101 (350)
                      .+++.|+|| |.+|..++..|++.|.  +|+++|++            +++++....++....   ........  +|.+
T Consensus        28 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~  102 (299)
T 3t7c_A           28 GKVAFITGAARGQGRSHAITLAREGA--DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG---RRIIASQVDVRDFD  102 (299)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT---CCEEEEECCTTCHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecccccccccccccCHHHHHHHHHHHHhcC---CceEEEECCCCCHH
Confidence            457888898 8999999999999995  89999987            344443333443221   12222211  1211


Q ss_pred             c-----------cCCCCEEEEecCCCcCc----cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          102 V-----------TAGSDLCIVTAGARQIA----GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       102 a-----------l~~aDiVIi~~g~~~~~----g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +           +...|++|.++|.....    ..+.   ...+.-|    ..+.+.+.+.+.+....+.||++|-
T Consensus       103 ~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS  178 (299)
T 3t7c_A          103 AMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSS  178 (299)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECC
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence            1           23789999998864321    1122   2223334    3455666666666555677877764

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.01  E-value=0.012  Score=52.60  Aligned_cols=114  Identities=10%  Similarity=0.082  Sum_probs=68.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c-----
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T-----  103 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l-----  103 (350)
                      +.++|.|+|| |.+|..++..|++.|.  +|+++|+++++++....++....   ........  +|.++    +     
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~   82 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKG---FKVEASVCDLSSRSERQELMNTVAN   82 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            4467999998 8999999999999985  89999999887765555554321   11222211  12111    1     


Q ss_pred             ---CCCCEEEEecCCCcC-c--cccH---HHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 ---AGSDLCIVTAGARQI-A--GESR---LNLLQRNL----SLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 ---~~aDiVIi~~g~~~~-~--g~~r---~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                         ...|++|.++|.... +  ..+.   ...+.-|+    .+.+...+.+.+. ..+.||++|-
T Consensus        83 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS  146 (260)
T 2ae2_A           83 HFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFISS  146 (260)
T ss_dssp             HTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEECC
T ss_pred             HcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence               578999999986432 1  1121   22333343    3444555555443 3466777754

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=97.00  E-value=0.0086  Score=54.59  Aligned_cols=115  Identities=14%  Similarity=0.124  Sum_probs=71.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------  102 (350)
                      .+++.|+|| |.+|.+++..|++.|.  +|++.|+++++++....++.....  ........  +|.++           
T Consensus        33 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  108 (281)
T 4dry_A           33 GRIALVTGGGTGVGRGIAQALSAEGY--SVVITGRRPDVLDAAAGEIGGRTG--NIVRAVVCDVGDPDQVAALFAAVRAE  108 (281)
T ss_dssp             -CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            356788898 8999999999999995  899999999888766666654321  11122211  12211           


Q ss_pred             cCCCCEEEEecCCCcC--c--cccH---HHHHHhh----HHHHHHHHhhhhccC-CCeEEEEEcC
Q 018760          103 TAGSDLCIVTAGARQI--A--GESR---LNLLQRN----LSLFKAIIPPLVKYS-PDCILLIVAN  155 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~--~--g~~r---~~~~~~n----~~i~~~i~~~i~~~~-p~a~viv~tN  155 (350)
                      +...|++|.++|....  +  ..+.   ...+.-|    ..+.+.+.+.+.+.. +.+.||++|-
T Consensus       109 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS  173 (281)
T 4dry_A          109 FARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGS  173 (281)
T ss_dssp             HSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence            1367999999986432  1  1122   1223333    345666777776654 3577777764

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=97.00  E-value=0.0027  Score=58.63  Aligned_cols=74  Identities=19%  Similarity=0.258  Sum_probs=52.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc------------------cchHHHHHHHHHHhhcCCCceEEEc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA------------------DKLRGEMLDLQHAAAFLPRTKILAS   97 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~------------------~~l~~~~~dl~~~~~~~~~~~v~~t   97 (350)
                      +..||.|||+|.+|+.++..|+..|+ .+|.|+|.|.                  .|++..+..+....   +..++...
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGV-G~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iN---P~v~v~~~  110 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGI-GKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNIN---PDVLFEVH  110 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECCCBC------------CCTTSBHHHHHHHHHHHHC---TTSEEEEE
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCC-CEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhC---CCcEEEEe
Confidence            45699999999999999999999996 6999999875                  45554444554433   45566543


Q ss_pred             CC-c------ccc------------CCCCEEEEec
Q 018760           98 VD-Y------AVT------------AGSDLCIVTA  113 (350)
Q Consensus        98 ~~-~------~al------------~~aDiVIi~~  113 (350)
                      .. .      +.+            +++|+||-+.
T Consensus       111 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~  145 (292)
T 3h8v_A          111 NYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCV  145 (292)
T ss_dssp             CCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECC
T ss_pred             cccCCcHHHHHHHhhhhcccccccCCCCCEEEECC
Confidence            21 1      111            6899999874

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=96.99  E-value=0.0047  Score=57.26  Aligned_cols=112  Identities=15%  Similarity=0.247  Sum_probs=70.6

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc-cchHHHHHHHHHHhhcCCCceEEEc--CCc----cccCC--C
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA-DKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAG--S  106 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~-~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~--a  106 (350)
                      ||||.|+|| |.+|+.++..|+..|.  +|+++|++. .........+...    ....+...  +|.    +++++  +
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~----~~~~~~~~Dl~d~~~~~~~~~~~~~   74 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSL----GNFEFVHGDIRNKNDVTRLITKYMP   74 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTT----CCCEEEECCTTCHHHHHHHHHHHCC
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhCCC--EEEEEeCCCccCchhhhhhhccC----CceEEEEcCCCCHHHHHHHHhccCC
Confidence            368999998 9999999999999885  999999853 2222122233221    12233322  122    24566  9


Q ss_pred             CEEEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          107 DLCIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       107 DiVIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |+||.+++.....  .......+..|+.-...+++.+.+....+.+|.+|
T Consensus        75 d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~S  124 (347)
T 1orr_A           75 DSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS  124 (347)
T ss_dssp             SEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             CEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence            9999998754211  11234456678888888888888776554566665

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=96.99  E-value=0.01  Score=53.60  Aligned_cols=132  Identities=14%  Similarity=0.124  Sum_probs=70.6

Q ss_pred             ccchhhhhhccccCCCCCCCCCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCc
Q 018760           14 GLDLTQTFFKPINHAAPPSPTKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRT   92 (350)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~   92 (350)
                      -|+.+.-.+++-+     .+..+.++|.|+|| |.+|..++..|++.|.  +|+++|+++++++....++....   ...
T Consensus        13 ~~~~~~~~~~~~~-----~~~l~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~   82 (272)
T 1yb1_A           13 RENLYFQGHMPKR-----RKSVTGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG---AKV   82 (272)
T ss_dssp             ------------C-----CCCCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CCE
T ss_pred             chhheeccccCCc-----ccccCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEEcCHHHHHHHHHHHHhcC---CeE
Confidence            3555555553322     12234568999998 9999999999999985  89999999877765555554321   122


Q ss_pred             eEEEc--CCccc-----------cCCCCEEEEecCCCcCcc---cc---HHHHHHhhHH----HHHHHHhhhhccCCCeE
Q 018760           93 KILAS--VDYAV-----------TAGSDLCIVTAGARQIAG---ES---RLNLLQRNLS----LFKAIIPPLVKYSPDCI  149 (350)
Q Consensus        93 ~v~~t--~~~~a-----------l~~aDiVIi~~g~~~~~g---~~---r~~~~~~n~~----i~~~i~~~i~~~~p~a~  149 (350)
                      .+...  +|.++           +.+.|+||.++|......   .+   -...+..|+.    +.+.+.+.+.+. ..+.
T Consensus        83 ~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~  161 (272)
T 1yb1_A           83 HTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN-NHGH  161 (272)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEE
T ss_pred             EEEEeeCCCHHHHHHHHHHHHHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCE
Confidence            22211  12111           137899999998643211   11   1223344433    345555555543 3466


Q ss_pred             EEEEcCC
Q 018760          150 LLIVANP  156 (350)
Q Consensus       150 viv~tNP  156 (350)
                      +|++|-.
T Consensus       162 iv~isS~  168 (272)
T 1yb1_A          162 IVTVASA  168 (272)
T ss_dssp             EEEECCC
T ss_pred             EEEEech
Confidence            7777644

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.99  E-value=0.0017  Score=61.57  Aligned_cols=95  Identities=14%  Similarity=0.118  Sum_probs=62.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      ....++|+|||.|.+|..+|..+...|.  +|+.+|+++...+.    ... .    .  +....+. +.++.||+|+++
T Consensus       161 ~l~gktvGIIG~G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~----~~~-~----g--~~~~~~l~ell~~aDvV~l~  227 (351)
T 3jtm_A          161 DLEGKTIGTVGAGRIGKLLLQRLKPFGC--NLLYHDRLQMAPEL----EKE-T----G--AKFVEDLNEMLPKCDVIVIN  227 (351)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHGGGCC--EEEEECSSCCCHHH----HHH-H----C--CEECSCHHHHGGGCSEEEEC
T ss_pred             cccCCEEeEEEeCHHHHHHHHHHHHCCC--EEEEeCCCccCHHH----HHh-C----C--CeEcCCHHHHHhcCCEEEEC
Confidence            4556799999999999999999988886  89999998654431    111 1    1  1223355 568999999999


Q ss_pred             cCCC-cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          113 AGAR-QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       113 ~g~~-~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      .... ...+.-       |.       +.+....|++++|+++.
T Consensus       228 ~Plt~~t~~li-------~~-------~~l~~mk~gailIN~aR  257 (351)
T 3jtm_A          228 MPLTEKTRGMF-------NK-------ELIGKLKKGVLIVNNAR  257 (351)
T ss_dssp             SCCCTTTTTCB-------SH-------HHHHHSCTTEEEEECSC
T ss_pred             CCCCHHHHHhh-------cH-------HHHhcCCCCCEEEECcC
Confidence            6532 111110       11       12233468999999974

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=96.99  E-value=0.0085  Score=54.25  Aligned_cols=117  Identities=15%  Similarity=0.236  Sum_probs=71.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c-----
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T-----  103 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l-----  103 (350)
                      +.++|.|+|| |.+|..++..|++.|.  +|+++|+++++++....++.... ......+...  +|.++    +     
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~  107 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAG-YPGTLIPYRCDLSNEEDILSMFSAIRS  107 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT-CSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHHHhcC-CCceEEEEEecCCCHHHHHHHHHHHHH
Confidence            3457899998 9999999999999985  89999999887765554554321 1011122211  12221    2     


Q ss_pred             --CCCCEEEEecCCCcCc---cccH---HHHHHhhHHH----HHHHHhhhhccCC-CeEEEEEcC
Q 018760          104 --AGSDLCIVTAGARQIA---GESR---LNLLQRNLSL----FKAIIPPLVKYSP-DCILLIVAN  155 (350)
Q Consensus       104 --~~aDiVIi~~g~~~~~---g~~r---~~~~~~n~~i----~~~i~~~i~~~~p-~a~viv~tN  155 (350)
                        ...|+||.++|.....   ..+.   ...+..|+.-    .+.+.+.+.+... .+.+|++|-
T Consensus       108 ~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS  172 (279)
T 1xg5_A          108 QHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININS  172 (279)
T ss_dssp             HHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECC
T ss_pred             hCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence              2789999998864321   1121   2234444443    6777777776543 456667653

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=96.99  E-value=0.0011  Score=62.32  Aligned_cols=93  Identities=12%  Similarity=0.157  Sum_probs=62.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      +...++|+|||.|.||..+|..+...|.  +|..+|++++..+.          +  . ......+. +.+++||+|+++
T Consensus       134 ~l~gktvGIiGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~----------~--~-~~~~~~~l~ell~~aDvV~l~  198 (324)
T 3evt_A          134 TLTGQQLLIYGTGQIGQSLAAKASALGM--HVIGVNTTGHPADH----------F--H-ETVAFTATADALATANFIVNA  198 (324)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESSCCCCTT----------C--S-EEEEGGGCHHHHHHCSEEEEC
T ss_pred             cccCCeEEEECcCHHHHHHHHHHHhCCC--EEEEECCCcchhHh----------H--h-hccccCCHHHHHhhCCEEEEc
Confidence            3446799999999999999999988886  99999998765431          0  1 12223345 568999999998


Q ss_pred             cCCC-cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          113 AGAR-QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       113 ~g~~-~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      .... ...+.     +  |.       +.+....|.+++|+++-
T Consensus       199 lPlt~~t~~l-----i--~~-------~~l~~mk~gailIN~aR  228 (324)
T 3evt_A          199 LPLTPTTHHL-----F--ST-------ELFQQTKQQPMLINIGR  228 (324)
T ss_dssp             CCCCGGGTTC-----B--SH-------HHHHTCCSCCEEEECSC
T ss_pred             CCCchHHHHh-----c--CH-------HHHhcCCCCCEEEEcCC
Confidence            6422 11111     0  11       12334468899999974

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=96.99  E-value=0.0068  Score=54.67  Aligned_cols=116  Identities=16%  Similarity=0.176  Sum_probs=73.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----------  102 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----------  102 (350)
                      +.+++.|+|| |.+|..++..|++.|.  +|++.|+++++++....++.....  ........  +|.++          
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   94 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA--RLVLSGRDVSELDAARRALGEQFG--TDVHTVAIDLAEPDAPAELARRAAE   94 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            3457888898 8999999999999995  899999999888766666654221  12222211  12111          


Q ss_pred             -cCCCCEEEEecCCCcCc---cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 -TAGSDLCIVTAGARQIA---GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 -l~~aDiVIi~~g~~~~~---g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                       +...|++|.++|.....   ..+.   ...+.-|    ..+.+.+.+.+.+....+.||++|-
T Consensus        95 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  158 (266)
T 4egf_A           95 AFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVAS  158 (266)
T ss_dssp             HHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence             23789999999864321   1121   1223334    3456666666766555677777764

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=96.98  E-value=0.0032  Score=56.33  Aligned_cols=114  Identities=15%  Similarity=0.157  Sum_probs=68.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHh-cCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----cC----
Q 018760           37 HTKISVIGT-GNVGMAIAQTILT-QDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----TA----  104 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~-~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l~----  104 (350)
                      .++|.|+|| |.+|..++..|++ .|.  +|++++++.++++....++....   ....+...  ++.++    ++    
T Consensus         4 ~k~vlITGasggIG~~~a~~L~~~~g~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~   78 (276)
T 1wma_A            4 IHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEG---LSPRFHQLDIDDLQSIRALRDFLRK   78 (276)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHhcCC--eEEEEeCChHHHHHHHHHHHhcC---CeeEEEECCCCCHHHHHHHHHHHHH
Confidence            457889998 9999999999999 785  89999999877765555554321   12232221  12221    22    


Q ss_pred             ---CCCEEEEecCCCcCcc------ccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcC
Q 018760          105 ---GSDLCIVTAGARQIAG------ESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVAN  155 (350)
Q Consensus       105 ---~aDiVIi~~g~~~~~g------~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN  155 (350)
                         ..|+||.++|......      ..-...+..|+.-...+.+.+.++ .+.+.||++|-
T Consensus        79 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS  139 (276)
T 1wma_A           79 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  139 (276)
T ss_dssp             HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             hcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECC
Confidence               7899999988643221      111233445555444455544443 12356666654

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.97  E-value=0.0049  Score=56.90  Aligned_cols=97  Identities=21%  Similarity=0.295  Sum_probs=65.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      ..+.++|+|||+|.+|..++..+...|.  +|+.+|+++++++.    +.. .    ..++....+. +.+++||+|+++
T Consensus       154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~--~V~~~d~~~~~~~~----~~~-~----g~~~~~~~~l~~~l~~aDvVi~~  222 (300)
T 2rir_A          154 TIHGSQVAVLGLGRTGMTIARTFAALGA--NVKVGARSSAHLAR----ITE-M----GLVPFHTDELKEHVKDIDICINT  222 (300)
T ss_dssp             CSTTSEEEEECCSHHHHHHHHHHHHTTC--EEEEEESSHHHHHH----HHH-T----TCEEEEGGGHHHHSTTCSEEEEC
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHHCCC--EEEEEECCHHHHHH----HHH-C----CCeEEchhhHHHHhhCCCEEEEC
Confidence            4566799999999999999999988885  89999998865442    221 1    1222222344 468999999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc-CCcch
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA-NPVDI  159 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t-NP~~~  159 (350)
                      .+..    .-       |..       .+....|.+++|+++ .|.++
T Consensus       223 ~p~~----~i-------~~~-------~~~~mk~g~~lin~a~g~~~~  252 (300)
T 2rir_A          223 IPSM----IL-------NQT-------VLSSMTPKTLILDLASRPGGT  252 (300)
T ss_dssp             CSSC----CB-------CHH-------HHTTSCTTCEEEECSSTTCSB
T ss_pred             CChh----hh-------CHH-------HHHhCCCCCEEEEEeCCCCCc
Confidence            7531    10       111       223345789999986 56555

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.96  E-value=0.0023  Score=57.76  Aligned_cols=73  Identities=19%  Similarity=0.277  Sum_probs=52.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc-------------------cchHHHHHHHHHHhhcCCCceEEEc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA-------------------DKLRGEMLDLQHAAAFLPRTKILAS   97 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~v~~t   97 (350)
                      ..||+|+|+|.+|+.++..|+..|+ .+|.|+|.+.                   .|++..+..+....   +..++...
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gv-g~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n---p~~~v~~~  103 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGV-GTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLN---PDIQLTAL  103 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTC-SEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHC---TTSEEEEE
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCC-CeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHC---CCCEEEEE
Confidence            4699999999999999999999997 6999999764                   44554444555432   34555543


Q ss_pred             CC------c-cccCCCCEEEEec
Q 018760           98 VD------Y-AVTAGSDLCIVTA  113 (350)
Q Consensus        98 ~~------~-~al~~aDiVIi~~  113 (350)
                      ..      . +.++++|+||.+.
T Consensus       104 ~~~~~~~~~~~~~~~~DvVi~~~  126 (251)
T 1zud_1          104 QQRLTGEALKDAVARADVVLDCT  126 (251)
T ss_dssp             CSCCCHHHHHHHHHHCSEEEECC
T ss_pred             eccCCHHHHHHHHhcCCEEEECC
Confidence            21      1 2367899999885

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.95  E-value=0.0012  Score=58.74  Aligned_cols=72  Identities=10%  Similarity=0.176  Sum_probs=49.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc--cccCCCCEEEE
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY--AVTAGSDLCIV  111 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~--~al~~aDiVIi  111 (350)
                      .-+.++|.|||+|.+|...+..|+..|.  +|++++.+..  + ...++....    ...+. ..++  +++.++|+||.
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA--~VtVvap~~~--~-~l~~l~~~~----~i~~i-~~~~~~~dL~~adLVIa   97 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGA--AITVVAPTVS--A-EINEWEAKG----QLRVK-RKKVGEEDLLNVFFIVV   97 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCC--CEEEECSSCC--H-HHHHHHHTT----SCEEE-CSCCCGGGSSSCSEEEE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEECCCCC--H-HHHHHHHcC----CcEEE-ECCCCHhHhCCCCEEEE
Confidence            3455799999999999999999999985  8999997543  1 122333221    23333 2233  57999999998


Q ss_pred             ecCC
Q 018760          112 TAGA  115 (350)
Q Consensus       112 ~~g~  115 (350)
                      +.+.
T Consensus        98 AT~d  101 (223)
T 3dfz_A           98 ATND  101 (223)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8653

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=96.95  E-value=0.0066  Score=54.06  Aligned_cols=76  Identities=14%  Similarity=0.192  Sum_probs=52.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c-----
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T-----  103 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l-----  103 (350)
                      +.++|.|+|| |.+|..++..|++.|.  +|+++|+++++++....++....   ....+...  +|.++    +     
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~   86 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGA--RVIIADLDEAMATKAVEDLRMEG---HDVSSVVMDVTNTESVQNAVRSVHE   86 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CceEEEEecCCCHHHHHHHHHHHHH
Confidence            3457999998 9999999999999985  89999999877765555554321   12222221  12221    2     


Q ss_pred             --CCCCEEEEecCCC
Q 018760          104 --AGSDLCIVTAGAR  116 (350)
Q Consensus       104 --~~aDiVIi~~g~~  116 (350)
                        ...|+||.++|..
T Consensus        87 ~~~~id~vi~~Ag~~  101 (260)
T 3awd_A           87 QEGRVDILVACAGIC  101 (260)
T ss_dssp             HHSCCCEEEECCCCC
T ss_pred             HcCCCCEEEECCCCC
Confidence              2689999998864

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.94  E-value=0.001  Score=65.55  Aligned_cols=69  Identities=22%  Similarity=0.459  Sum_probs=50.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-c-ccCCCCE
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-A-VTAGSDL  108 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~-al~~aDi  108 (350)
                      +.|||.|+|+|.+|+++|..|...+.  +|+++|.|+++++.    +.+..    ...+...  ++   + + .+++||+
T Consensus         2 ~~M~iiI~G~G~vG~~la~~L~~~~~--~v~vId~d~~~~~~----~~~~~----~~~~i~Gd~~~~~~L~~Agi~~ad~   71 (461)
T 4g65_A            2 NAMKIIILGAGQVGGTLAENLVGENN--DITIVDKDGDRLRE----LQDKY----DLRVVNGHASHPDVLHEAGAQDADM   71 (461)
T ss_dssp             CCEEEEEECCSHHHHHHHHHTCSTTE--EEEEEESCHHHHHH----HHHHS----SCEEEESCTTCHHHHHHHTTTTCSE
T ss_pred             CcCEEEEECCCHHHHHHHHHHHHCCC--CEEEEECCHHHHHH----HHHhc----CcEEEEEcCCCHHHHHhcCCCcCCE
Confidence            46899999999999999999988885  99999999987763    44322    1223221  22   2 3 3899999


Q ss_pred             EEEecC
Q 018760          109 CIVTAG  114 (350)
Q Consensus       109 VIi~~g  114 (350)
                      +|.+.+
T Consensus        72 ~ia~t~   77 (461)
T 4g65_A           72 LVAVTN   77 (461)
T ss_dssp             EEECCS
T ss_pred             EEEEcC
Confidence            887643

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=96.94  E-value=0.00081  Score=62.17  Aligned_cols=89  Identities=13%  Similarity=0.131  Sum_probs=61.7

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      ...++|+|||.|.+|..+|..+...|.  +|..+|++++..+.                +....+. +.+++||+|+++.
T Consensus       120 l~g~tvGIIGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~----------------~~~~~~l~ell~~aDiV~l~~  181 (290)
T 3gvx_A          120 LYGKALGILGYGGIGRRVAHLAKAFGM--RVIAYTRSSVDQNV----------------DVISESPADLFRQSDFVLIAI  181 (290)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTC--EEEEECSSCCCTTC----------------SEECSSHHHHHHHCSEEEECC
T ss_pred             eecchheeeccCchhHHHHHHHHhhCc--EEEEEecccccccc----------------ccccCChHHHhhccCeEEEEe
Confidence            446799999999999999999998886  99999998765431                1123355 5688999999996


Q ss_pred             CCC-cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          114 GAR-QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       114 g~~-~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ... ...+.-       |       .+.+....|++++|+++.
T Consensus       182 P~t~~t~~li-------~-------~~~l~~mk~gailIN~aR  210 (290)
T 3gvx_A          182 PLTDKTRGMV-------N-------SRLLANARKNLTIVNVAR  210 (290)
T ss_dssp             CCCTTTTTCB-------S-------HHHHTTCCTTCEEEECSC
T ss_pred             eccccchhhh-------h-------HHHHhhhhcCceEEEeeh
Confidence            432 111110       1       122344468999999973

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=96.93  E-value=0.0089  Score=53.78  Aligned_cols=116  Identities=16%  Similarity=0.153  Sum_probs=69.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c-----
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T-----  103 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l-----  103 (350)
                      +.+++.|+|| |.+|..++..|++.|.  +|+++|+++++++....++..... .........  +|.++    +     
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~   88 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAP-DAEVLTTVADVSDEAQVEAYVTATTE   88 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCT-TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcC-CceEEEEEccCCCHHHHHHHHHHHHH
Confidence            3457889998 9999999999999985  899999998877655555543210 112222211  12221    2     


Q ss_pred             --CCCCEEEEecCCCcC--c--cccH---HHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 --AGSDLCIVTAGARQI--A--GESR---LNLLQRNL----SLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 --~~aDiVIi~~g~~~~--~--g~~r---~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                        ...|++|.++|....  +  ..+.   ...+.-|+    ...+.+.+.+.+.. .+.||++|-
T Consensus        89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  152 (267)
T 1iy8_A           89 RFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTAS  152 (267)
T ss_dssp             HHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcc
Confidence              268999999886432  1  1121   22233343    44556666666543 355666653

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.93  E-value=0.015  Score=52.70  Aligned_cols=115  Identities=12%  Similarity=0.174  Sum_probs=65.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCC------------ccchHHHHHHHHHHhhcCCCceEEEc--CCc
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAK------------ADKLRGEMLDLQHAAAFLPRTKILAS--VDY  100 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~------------~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~  100 (350)
                      +.+++.|+|| |.+|..++..|+..|.  +|+++|++            .++++....++....   ........  +|.
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~   83 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA--DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG---RKAYTAEVDVRDR   83 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT---SCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcccccccccccchhhhHHHHHHHHHHHhcC---CceEEEEccCCCH
Confidence            4457889998 8999999999999995  89999987            333333333333211   12222211  122


Q ss_pred             cc----c-------CCCCEEEEecCCCcCc-ccc---HHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcC
Q 018760          101 AV----T-------AGSDLCIVTAGARQIA-GES---RLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVAN  155 (350)
Q Consensus       101 ~a----l-------~~aDiVIi~~g~~~~~-g~~---r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN  155 (350)
                      ++    +       ...|++|.++|..... ..+   -...+.-|+.-...+.+.+..+ ...+.||++|-
T Consensus        84 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  154 (287)
T 3pxx_A           84 AAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS  154 (287)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence            11    2       2789999998864321 111   1233444544333444444433 34566777764

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=96.92  E-value=0.0043  Score=55.04  Aligned_cols=114  Identities=16%  Similarity=0.183  Sum_probs=67.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc-----
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT-----  103 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al-----  103 (350)
                      +.++|.|+|| |.+|..++..|++.|.  +|+++|+++++++....++....   ....+...  +|.+    .+     
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~   84 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG---GQAFACRCDITSEQELSALADFAIS   84 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhC---CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            3468999998 9999999999999985  89999999877765555554321   12222211  1221    12     


Q ss_pred             --CCCCEEEEecCCCcCc--cccH---HHHHHhhHH----HHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 --AGSDLCIVTAGARQIA--GESR---LNLLQRNLS----LFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 --~~aDiVIi~~g~~~~~--g~~r---~~~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                        .+.|+||.++|.....  ..+.   ...+..|+.    +.+.+.+.+.+.. .+.+|++|.
T Consensus        85 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS  146 (255)
T 1fmc_A           85 KLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITS  146 (255)
T ss_dssp             HHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             hcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence              2799999998764321  1121   223344443    3444444444433 455666653

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.92  E-value=0.0009  Score=62.60  Aligned_cols=94  Identities=17%  Similarity=0.242  Sum_probs=61.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      ....++|+|||.|.+|+.+|..+...|.  +|+.+|++++..++       .      .......+. +.+++||+|+++
T Consensus       136 ~l~g~tvGIiG~G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~-------~------~~~~~~~~l~ell~~aDiV~l~  200 (315)
T 3pp8_A          136 TREEFSVGIMGAGVLGAKVAESLQAWGF--PLRCWSRSRKSWPG-------V------ESYVGREELRAFLNQTRVLINL  200 (315)
T ss_dssp             CSTTCCEEEECCSHHHHHHHHHHHTTTC--CEEEEESSCCCCTT-------C------EEEESHHHHHHHHHTCSEEEEC
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHHHHCCC--EEEEEcCCchhhhh-------h------hhhcccCCHHHHHhhCCEEEEe
Confidence            3456799999999999999999988786  89999998764431       0      011111244 568899999999


Q ss_pred             cCCC-cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          113 AGAR-QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       113 ~g~~-~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      .... ...+.     +  |       .+.+....|++++|+++.-
T Consensus       201 ~Plt~~t~~l-----i--~-------~~~l~~mk~gailIN~aRG  231 (315)
T 3pp8_A          201 LPNTAQTVGI-----I--N-------SELLDQLPDGAYVLNLARG  231 (315)
T ss_dssp             CCCCGGGTTC-----B--S-------HHHHTTSCTTEEEEECSCG
T ss_pred             cCCchhhhhh-----c--c-------HHHHhhCCCCCEEEECCCC
Confidence            6422 11111     0  1       1223444689999999743

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=96.90  E-value=0.0011  Score=62.28  Aligned_cols=93  Identities=18%  Similarity=0.256  Sum_probs=62.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      ....++|+|||.|.+|..+|..+...|.  +|..+|++++..+.          +   .......+. +.+++||+|+++
T Consensus       137 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~----------~---~~~~~~~~l~ell~~aDvV~l~  201 (324)
T 3hg7_A          137 GLKGRTLLILGTGSIGQHIAHTGKHFGM--KVLGVSRSGRERAG----------F---DQVYQLPALNKMLAQADVIVSV  201 (324)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCCCCTT----------C---SEEECGGGHHHHHHTCSEEEEC
T ss_pred             ccccceEEEEEECHHHHHHHHHHHhCCC--EEEEEcCChHHhhh----------h---hcccccCCHHHHHhhCCEEEEe
Confidence            4456799999999999999999988886  99999998743321          0   112223345 568999999998


Q ss_pred             cCCCc-CccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          113 AGARQ-IAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       113 ~g~~~-~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ..... ..+.     +  |       .+.+....|++++|+++-
T Consensus       202 lPlt~~T~~l-----i--~-------~~~l~~mk~gailIN~aR  231 (324)
T 3hg7_A          202 LPATRETHHL-----F--T-------ASRFEHCKPGAILFNVGR  231 (324)
T ss_dssp             CCCCSSSTTS-----B--C-------TTTTTCSCTTCEEEECSC
T ss_pred             CCCCHHHHHH-----h--H-------HHHHhcCCCCcEEEECCC
Confidence            64321 1111     0  1       123444578999999974

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.88  E-value=0.0041  Score=56.35  Aligned_cols=99  Identities=14%  Similarity=0.221  Sum_probs=64.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccCC-CCEE
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAG-SDLC  109 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~-aDiV  109 (350)
                      +|||.|+|+|.+|+.++..|+..|.  +|+.++++++++.             ...++...  +|.    +.+++ +|+|
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-------------~~~~~~~~Dl~d~~~~~~~~~~~~d~v   67 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGH--EVTGLRRSAQPMP-------------AGVQTLIADVTRPDTLASIVHLRPEIL   67 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC--CEEEEECTTSCCC-------------TTCCEEECCTTCGGGCTTGGGGCCSEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--EEEEEeCCccccc-------------cCCceEEccCCChHHHHHhhcCCCCEE
Confidence            4799999999999999999999985  8999999876532             11122211  122    24555 9999


Q ss_pred             EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |.+++...   .........|+.-.+.+++.+.+....- +|.+|
T Consensus        68 ih~a~~~~---~~~~~~~~~n~~~~~~ll~a~~~~~~~~-~v~~S  108 (286)
T 3gpi_A           68 VYCVAASE---YSDEHYRLSYVEGLRNTLSALEGAPLQH-VFFVS  108 (286)
T ss_dssp             EECHHHHH---HC-----CCSHHHHHHHHHHTTTSCCCE-EEEEE
T ss_pred             EEeCCCCC---CCHHHHHHHHHHHHHHHHHHHhhCCCCE-EEEEc
Confidence            99976421   1223345567888888888888754433 44444

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=96.88  E-value=0.0046  Score=55.46  Aligned_cols=114  Identities=11%  Similarity=0.102  Sum_probs=68.9

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T------  103 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l------  103 (350)
                      .+++.|+|| |.+|.+++..|++.|.  +|+++|+++++++....++...   .........  +|.++    +      
T Consensus         6 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (257)
T 3imf_A            6 EKVVIITGGSSGMGKGMATRFAKEGA--RVVITGRTKEKLEEAKLEIEQF---PGQILTVQMDVRNTDDIQKMIEQIDEK   80 (257)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCS---TTCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc---CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            357888898 8999999999999995  8999999998777554444321   112222211  12111    2      


Q ss_pred             -CCCCEEEEecCCCcC-c--cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 -AGSDLCIVTAGARQI-A--GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 -~~aDiVIi~~g~~~~-~--g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                       ...|++|.++|.... +  ..+.   ...+.-|    ..+.+.+.+.+.+....+.||++|-
T Consensus        81 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS  143 (257)
T 3imf_A           81 FGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVA  143 (257)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECc
Confidence             268999999885432 1  1121   1223333    3455566666645455666777754

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.87  E-value=0.0022  Score=60.48  Aligned_cols=36  Identities=19%  Similarity=0.548  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      +..||.|||+|.+|+.++..|+..|+ .+|+|+|.+.
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~aGV-g~ItlvD~D~   68 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAWGV-RKITFVDNGT   68 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCB
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEecCCE
Confidence            45799999999999999999999997 6999999764

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=96.87  E-value=0.0083  Score=52.97  Aligned_cols=115  Identities=16%  Similarity=0.164  Sum_probs=63.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEE-eCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c----
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALV-DAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T----  103 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~-D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l----  103 (350)
                      +.++|.|+|+ |.+|..++..|++.|.  +|+++ ++++++++....++....   ........  +|.+.    +    
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~--~V~~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~   78 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGA--NIVLNGSPASTSLDATAEEFKAAG---INVVVAKGDVKNPEDVENMVKTAM   78 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECTTCSHHHHHHHHHHHTT---CCEEEEESCTTSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCcCHHHHHHHHHHHHhcC---CcEEEEECCCCCHHHHHHHHHHHH
Confidence            3468999998 9999999999999985  89998 567666654444444321   12222211  12222    2    


Q ss_pred             ---CCCCEEEEecCCCcCc------cccHHHHHHhhHHH----HHHHHhhhhccCCCeEEEEEcCC
Q 018760          104 ---AGSDLCIVTAGARQIA------GESRLNLLQRNLSL----FKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       104 ---~~aDiVIi~~g~~~~~------g~~r~~~~~~n~~i----~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                         .+.|+||.++|.....      ...-...+..|+.-    .+.+.+.+.+. +.+.+|++|..
T Consensus        79 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~  143 (247)
T 2hq1_A           79 DAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQ-KSGKIINITSI  143 (247)
T ss_dssp             HHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHH-TCEEEEEECC-
T ss_pred             HhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcCh
Confidence               2789999998864211      11112334445443    44444444433 34567777644

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=96.87  E-value=0.0053  Score=56.02  Aligned_cols=97  Identities=21%  Similarity=0.239  Sum_probs=63.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc-CCccccCCCCEEEEecCC
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS-VDYAVTAGSDLCIVTAGA  115 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t-~~~~al~~aDiVIi~~g~  115 (350)
                      |||.|+|| |.+|++++..|+..|.  +|+.+.++++..                 ++... .+.++++++|.||.+++.
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~--~V~~l~R~~~~~-----------------~~~~~~~~~~~l~~~d~vihla~~   61 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGH--EVTLVSRKPGPG-----------------RITWDELAASGLPSCDAAVNLAGE   61 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCTT-----------------EEEHHHHHHHCCCSCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCcC-----------------eeecchhhHhhccCCCEEEEeccC
Confidence            89999999 9999999999999995  999998876432                 11110 123567899999998764


Q ss_pred             Cc-----Cccc-cHHHHHHhhHHHHHHHHhhhhccC-CCeEEEEE
Q 018760          116 RQ-----IAGE-SRLNLLQRNLSLFKAIIPPLVKYS-PDCILLIV  153 (350)
Q Consensus       116 ~~-----~~g~-~r~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~  153 (350)
                      +-     +... ...+....|+...+.+.+.+.+.. +..++|..
T Consensus        62 ~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~  106 (298)
T 4b4o_A           62 NILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLV  106 (298)
T ss_dssp             CSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred             cccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence            31     1111 123445567777777777776654 33334443

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.87  E-value=0.0025  Score=58.43  Aligned_cols=77  Identities=21%  Similarity=0.243  Sum_probs=53.8

Q ss_pred             CCCeEEEEc-CChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC---c-cccCCCCEEE
Q 018760           36 RHTKISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD---Y-AVTAGSDLCI  110 (350)
Q Consensus        36 ~~~KI~IIG-AG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~---~-~al~~aDiVI  110 (350)
                      +.+++.|+| +|.+|.+++..|+..|.  +|+++|+++++++....++...... ....... ++   . +.++++|+||
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~--~V~i~~R~~~~~~~l~~~~~~~~~~-~~~~~D~-~~~~~~~~~~~~~DvlV  193 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKV-NVTAAET-ADDASRAEAVKGAHFVF  193 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTC-CCEEEEC-CSHHHHHHHTTTCSEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCHHHHHHHHHHHHhcCCc-EEEEecC-CCHHHHHHHHHhCCEEE
Confidence            346899999 59999999999999985  7999999988877666666432110 0111111 22   2 3477899999


Q ss_pred             EecCCC
Q 018760          111 VTAGAR  116 (350)
Q Consensus       111 i~~g~~  116 (350)
                      .+++..
T Consensus       194 n~ag~g  199 (287)
T 1lu9_A          194 TAGAIG  199 (287)
T ss_dssp             ECCCTT
T ss_pred             ECCCcc
Confidence            998653

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.87  E-value=0.0089  Score=52.91  Aligned_cols=115  Identities=17%  Similarity=0.217  Sum_probs=70.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc----CCccc--------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS----VDYAV--------  102 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t----~~~~a--------  102 (350)
                      +.+++.|+|+ |.+|..++..|++.|.  +|+++|+++++++.....+.....  ....+...    ++.++        
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~d~d~~~~~~~~~~~~~~   88 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGA--SVVLLGRTEASLAEVSDQIKSAGQ--PQPLIIALNLENATAQQYRELAARV   88 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTS--CCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEecCHHHHHHHHHHHHhcCC--CCceEEEeccccCCHHHHHHHHHHH
Confidence            3457888898 8999999999999995  899999999888766656654321  12222221    12111        


Q ss_pred             ---cCCCCEEEEecCCCc--Cc--cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 ---TAGSDLCIVTAGARQ--IA--GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 ---l~~aDiVIi~~g~~~--~~--g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                         +...|++|.++|...  .+  ..+.   ...+.-|    ..+.+.+.+.+.+. ..+.+|++|-
T Consensus        89 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~iv~isS  154 (247)
T 3i1j_A           89 EHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRS-EDASIAFTSS  154 (247)
T ss_dssp             HHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTS-SSEEEEEECC
T ss_pred             HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCeEEEEcc
Confidence               237899999988632  21  1121   1223333    44555555655553 3566777653

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=96.85  E-value=0.0064  Score=54.53  Aligned_cols=111  Identities=14%  Similarity=0.211  Sum_probs=69.1

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT------  103 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al------  103 (350)
                      .+++.|+|| |.+|.+++..|++.|.  +|+++|+++++++....++..      .......  +|.+    .+      
T Consensus         8 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~------~~~~~~~D~~~~~~v~~~~~~~~~~   79 (259)
T 4e6p_A            8 GKSALITGSARGIGRAFAEAYVREGA--TVAIADIDIERARQAAAEIGP------AAYAVQMDVTRQDSIDAAIAATVEH   79 (259)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT------TEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC------CceEEEeeCCCHHHHHHHHHHHHHH
Confidence            457889998 8999999999999995  899999998877654444321      1122111  1211    12      


Q ss_pred             -CCCCEEEEecCCCcC-c--cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 -AGSDLCIVTAGARQI-A--GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 -~~aDiVIi~~g~~~~-~--g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                       ...|++|.++|.... +  ..+.   ...+.-|    ..+.+.+.+.+.+..+.+.||++|-
T Consensus        80 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  142 (259)
T 4e6p_A           80 AGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMAS  142 (259)
T ss_dssp             SSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence             279999999886432 1  1121   2223334    3455666666666555677777764

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=96.85  E-value=0.012  Score=52.38  Aligned_cols=112  Identities=18%  Similarity=0.312  Sum_probs=68.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------  102 (350)
                      .+++.|+|| |.+|..++..|++.|.  +|+++|+++++++....++....   ........  +|.++           
T Consensus         7 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~~~~~~~~~~~~~~~~   81 (247)
T 2jah_A            7 GKVALITGASSGIGEATARALAAEGA--AVAIAARRVEKLRALGDELTAAG---AKVHVLELDVADRQGVDAAVASTVEA   81 (247)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            357899998 8999999999999985  89999999887776555554321   12222211  12221           


Q ss_pred             cCCCCEEEEecCCCcCc---cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 TAGSDLCIVTAGARQIA---GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~~---g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +...|++|.++|.....   ..+.   ...+.-|    ..+.+.+.+.+.+..  +.||++|-
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS  142 (247)
T 2jah_A           82 LGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK--GTVVQMSS  142 (247)
T ss_dssp             HSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC--CEEEEEcc
Confidence            23789999998864211   1122   1223334    344555555555433  66777754

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=96.84  E-value=0.0047  Score=59.99  Aligned_cols=92  Identities=13%  Similarity=0.138  Sum_probs=63.6

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      ...++|+|+|.|.+|..+|..+...|.  +|+.+|+++.+...    .. ..    ..++   .+. +.+++||+|+.+.
T Consensus       209 L~GktVgIiG~G~IG~~vA~~Lka~Ga--~Viv~D~~p~~a~~----A~-~~----G~~~---~sL~eal~~ADVVilt~  274 (436)
T 3h9u_A          209 IAGKTACVCGYGDVGKGCAAALRGFGA--RVVVTEVDPINALQ----AA-ME----GYQV---LLVEDVVEEAHIFVTTT  274 (436)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHH----HH-HT----TCEE---CCHHHHTTTCSEEEECS
T ss_pred             ccCCEEEEEeeCHHHHHHHHHHHHCCC--EEEEECCChhhhHH----HH-Hh----CCee---cCHHHHHhhCCEEEECC
Confidence            445799999999999999999998885  89999998754421    11 11    1122   255 6799999999876


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV  157 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~  157 (350)
                      +...--+                 .+.+....|++++++++++.
T Consensus       275 gt~~iI~-----------------~e~l~~MK~gAIVINvgRg~  301 (436)
T 3h9u_A          275 GNDDIIT-----------------SEHFPRMRDDAIVCNIGHFD  301 (436)
T ss_dssp             SCSCSBC-----------------TTTGGGCCTTEEEEECSSSG
T ss_pred             CCcCccC-----------------HHHHhhcCCCcEEEEeCCCC
Confidence            5322111                 12344457899999999765

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=96.84  E-value=0.0091  Score=53.67  Aligned_cols=115  Identities=19%  Similarity=0.143  Sum_probs=69.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T------  103 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l------  103 (350)
                      .+++.|+|| |.+|..++..|++.|.  +|+++|+++++++....++..... .........  +|.++    +      
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (267)
T 2gdz_A            7 GKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFE-PQKTLFIQCDVADQQQLRDTFRKVVDH   83 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSC-GGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhcC-CCceEEEecCCCCHHHHHHHHHHHHHH
Confidence            457999998 9999999999999985  899999998766544444432110 011122211  12211    1      


Q ss_pred             -CCCCEEEEecCCCcCccccHHHHHHhhHH----HHHHHHhhhhccC--CCeEEEEEcCC
Q 018760          104 -AGSDLCIVTAGARQIAGESRLNLLQRNLS----LFKAIIPPLVKYS--PDCILLIVANP  156 (350)
Q Consensus       104 -~~aDiVIi~~g~~~~~g~~r~~~~~~n~~----i~~~i~~~i~~~~--p~a~viv~tNP  156 (350)
                       ...|+||.++|....  ..-...+..|..    ..+.+.+.+.+..  +.+.+|++|-.
T Consensus        84 ~g~id~lv~~Ag~~~~--~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~  141 (267)
T 2gdz_A           84 FGRLDILVNNAGVNNE--KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSL  141 (267)
T ss_dssp             HSCCCEEEECCCCCCS--SSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred             cCCCCEEEECCCCCCh--hhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCc
Confidence             257999999986532  122233444433    5666777776643  35667777643

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=96.84  E-value=0.0033  Score=58.32  Aligned_cols=116  Identities=9%  Similarity=0.167  Sum_probs=67.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCCE
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSDL  108 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aDi  108 (350)
                      +++||.|+|| |.+|++++..|++.|.  +|+.++++.+.... ...+...........+...  +|   . ++++++|+
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   80 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPTNVKK-VKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTG   80 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCTTCHHH-HHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEECCcchhHH-HHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCE
Confidence            4568999997 9999999999999885  89988887764432 1112110000001122211  12   2 35788999


Q ss_pred             EEEecCCCcCcccc-HHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          109 CIVTAGARQIAGES-RLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       109 VIi~~g~~~~~g~~-r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ||.+++........ ..+.+..|+.-...+.+.+.+...-..+|++|
T Consensus        81 Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~S  127 (337)
T 2c29_D           81 VFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTS  127 (337)
T ss_dssp             EEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred             EEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEee
Confidence            99987643211122 22456668777777777777654223455554

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=96.83  E-value=0.012  Score=52.45  Aligned_cols=73  Identities=16%  Similarity=0.194  Sum_probs=50.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----ccC----
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VTA----  104 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al~----  104 (350)
                      +.++|.|+|| |.+|..++..|++.|.  +|+++|+++++++....++.      ....+...  +|.+    .++    
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~------~~~~~~~~D~~~~~~v~~~~~~~~~   82 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLG------NNCVFAPADVTSEKDVQTALALAKG   82 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHC------TTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcHhHHHHHHHhC------CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            4468999999 9999999999999985  89999999887765443331      11222211  1221    222    


Q ss_pred             ---CCCEEEEecCCC
Q 018760          105 ---GSDLCIVTAGAR  116 (350)
Q Consensus       105 ---~aDiVIi~~g~~  116 (350)
                         ..|+||.++|..
T Consensus        83 ~~g~id~li~~Ag~~   97 (265)
T 2o23_A           83 KFGRVDVAVNCAGIA   97 (265)
T ss_dssp             HHSCCCEEEECCCCC
T ss_pred             HCCCCCEEEECCccC
Confidence               799999998864

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=96.83  E-value=0.002  Score=61.68  Aligned_cols=118  Identities=22%  Similarity=0.363  Sum_probs=73.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc-------cchHHHHHHHHHHhhcCCCceEEEcCCc-cccCC
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA-------DKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAG  105 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~-------~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~  105 (350)
                      ..+..||+|+|||.+|..++..++..|. ++|+++|++.       +++......+.+...  ...+   ..++ +++++
T Consensus       185 ~l~d~kVVi~GAGaAG~~iA~ll~~~Ga-~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~--~~~~---~~~L~eav~~  258 (398)
T 2a9f_A          185 SLDEVSIVVNGGGSAGLSITRKLLAAGA-TKVTVVDKFGIINEQEAAQLAPHHLDIAKVTN--REFK---SGTLEDALEG  258 (398)
T ss_dssp             CTTSCEEEEECCSHHHHHHHHHHHHHTC-CEEEEEETTEECCTTCCCSCCC---CHHHHHS--CTTC---CCSCSHHHHT
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHHcCC-CeEEEEECCCcccCCccccchHHHHHHhhccC--cccc---hhhHHHHhcc
Confidence            4456799999999999999999998885 7999999973       224333333333221  1111   2234 68999


Q ss_pred             CCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch-HHHHHHHHhCCCCCcEeeec
Q 018760          106 SDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI-LTYVAWKLSGLPSNRVIGSG  179 (350)
Q Consensus       106 aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~-~~~~~~~~sg~~~~rviG~g  179 (350)
                      ||++|=+.+    |+.-       +    +++.+.|   +++.+|+-+|||..- ..+.+.+. |   ..+|++|
T Consensus       259 ADV~IG~Sa----pgl~-------T----~EmVk~M---a~~pIIfalsNPt~E~~pe~a~~~-g---~~i~atG  311 (398)
T 2a9f_A          259 ADIFIGVSA----PGVL-------K----AEWISKM---AARPVIFAMANPIPEIYPDEALEA-G---AYIVGTG  311 (398)
T ss_dssp             TCSEEECCS----TTCC-------C----HHHHHTS---CSSCEEEECCSSSCSSCHHHHHTT-T---CSEEEES
T ss_pred             CCEEEecCC----CCCC-------C----HHHHHhh---CCCCEEEECCCCCccCCHHHHHHh-C---CeEEEeC
Confidence            999876642    3321       1    2233333   378999999999743 34444432 3   3688887

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=96.83  E-value=0.0081  Score=53.23  Aligned_cols=115  Identities=11%  Similarity=0.132  Sum_probs=69.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----------  102 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----------  102 (350)
                      +.+++.|+|| |.+|..++..|++.|.  +|+++|+++++++....++....   ........  +|.+.          
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~   78 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA--TVVGTATSQASAEKFENSMKEKG---FKARGLVLNISDIESIQNFFAEIKA   78 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CceEEEEecCCCHHHHHHHHHHHHH
Confidence            3457888898 8999999999999985  89999999987776555555422   12222211  12111          


Q ss_pred             -cCCCCEEEEecCCCcCc---cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          103 -TAGSDLCIVTAGARQIA---GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       103 -l~~aDiVIi~~g~~~~~---g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                       ....|+||.++|.....   ..+.   ...+.-|    ..+.+.+.+.+.+. +.+.+|++|-.
T Consensus        79 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS~  142 (247)
T 3lyl_A           79 ENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKK-RWGRIISIGSV  142 (247)
T ss_dssp             TTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCT
T ss_pred             HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCeEEEEEcch
Confidence             12579999999865321   1121   2223334    33445555555543 34667777643

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=96.82  E-value=0.0075  Score=53.39  Aligned_cols=114  Identities=12%  Similarity=0.093  Sum_probs=68.1

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T------  103 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l------  103 (350)
                      .++|.|+|| |.+|..++..|++.|.  +|+++|+++++++....++...    ....+...  +|.+.    +      
T Consensus         6 ~k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (251)
T 1zk4_A            6 GKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP----DQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT----TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhcc----CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            457889998 9999999999999985  8999999987665433333211    12222221  12111    2      


Q ss_pred             -CCCCEEEEecCCCcCc---cccH---HHHHHhhHH----HHHHHHhhhhccCCCeEEEEEcCC
Q 018760          104 -AGSDLCIVTAGARQIA---GESR---LNLLQRNLS----LFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       104 -~~aDiVIi~~g~~~~~---g~~r---~~~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                       ...|+||.++|.....   ..+.   ...+..|+.    ..+.+.+.+.+....+.+|++|..
T Consensus        80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~  143 (251)
T 1zk4_A           80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI  143 (251)
T ss_dssp             HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCG
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCc
Confidence             2589999998864321   1121   233444544    556666666654432567777643

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=96.82  E-value=0.011  Score=55.17  Aligned_cols=116  Identities=14%  Similarity=0.157  Sum_probs=70.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh-c-CCCceEEEc--CCc----cccCCC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA-F-LPRTKILAS--VDY----AVTAGS  106 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~-~-~~~~~v~~t--~~~----~al~~a  106 (350)
                      ++|||.|+|| |.+|+.++..|+..|.  +|+++|++..........+..... . .....+...  +|.    ++++++
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  103 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV  103 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence            3479999999 9999999999999885  999999976422111222221110 0 012233222  121    346799


Q ss_pred             CEEEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          107 DLCIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       107 DiVIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |+||.+++....+  .......+..|+.-...+++.+.+.... .+|.+|
T Consensus       104 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~S  152 (352)
T 1sb8_A          104 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ-SFTYAA  152 (352)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence            9999998754211  1123445566777778888877776443 345554

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=96.81  E-value=0.007  Score=54.13  Aligned_cols=117  Identities=15%  Similarity=0.212  Sum_probs=70.3

Q ss_pred             CCCCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc-
Q 018760           32 SPTKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT-  103 (350)
Q Consensus        32 ~~~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al-  103 (350)
                      +|..+.+++.|+|| |.+|..++..|++.|.  +|+++|+++++++....++..      .......  +|.+    .+ 
T Consensus         4 ~m~l~~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~   75 (261)
T 3n74_A            4 SMSLEGKVALITGAGSGFGEGMAKRFAKGGA--KVVIVDRDKAGAERVAGEIGD------AALAVAADISKEADVDAAVE   75 (261)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT------TEEEEECCTTSHHHHHHHHH
T ss_pred             cccCCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCC------ceEEEEecCCCHHHHHHHHH
Confidence            34445668999998 8999999999999995  899999998877654443321      1222211  1211    12 


Q ss_pred             ------CCCCEEEEecCCCcCcc----ccHH---HHHHhh----HHHHHHHHhhhhccC---CCeEEEEEcCC
Q 018760          104 ------AGSDLCIVTAGARQIAG----ESRL---NLLQRN----LSLFKAIIPPLVKYS---PDCILLIVANP  156 (350)
Q Consensus       104 ------~~aDiVIi~~g~~~~~g----~~r~---~~~~~n----~~i~~~i~~~i~~~~---p~a~viv~tNP  156 (350)
                            ...|++|.++|....++    .+..   ..+.-|    ..+.+.+.+.+.+..   ..+.+|+++-.
T Consensus        76 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~  148 (261)
T 3n74_A           76 AALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVAST  148 (261)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCT
T ss_pred             HHHHhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCch
Confidence                  26799999988643211    1211   122333    345566666665542   25667777643

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=96.81  E-value=0.0026  Score=61.60  Aligned_cols=96  Identities=17%  Similarity=0.283  Sum_probs=62.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      +...++|+|||.|.+|+.+|..+...|.  +|+.||+++.....             .  .....+. +.++.||+|+++
T Consensus       153 el~gktvGIIGlG~IG~~vA~~l~~~G~--~V~~yd~~~~~~~~-------------~--~~~~~sl~ell~~aDvV~lh  215 (416)
T 3k5p_A          153 EVRGKTLGIVGYGNIGSQVGNLAESLGM--TVRYYDTSDKLQYG-------------N--VKPAASLDELLKTSDVVSLH  215 (416)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECTTCCCCBT-------------T--BEECSSHHHHHHHCSEEEEC
T ss_pred             cCCCCEEEEEeeCHHHHHHHHHHHHCCC--EEEEECCcchhccc-------------C--cEecCCHHHHHhhCCEEEEe
Confidence            4556799999999999999999888886  99999987542210             1  1123355 568999999998


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC--Ccch
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN--PVDI  159 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN--P~~~  159 (350)
                      .....   +++ .++  |.       +.+....|.+++|+++-  ++|.
T Consensus       216 vPlt~---~T~-~li--~~-------~~l~~mk~gailIN~aRG~vvd~  251 (416)
T 3k5p_A          216 VPSSK---STS-KLI--TE-------AKLRKMKKGAFLINNARGSDVDL  251 (416)
T ss_dssp             CCC---------CCB--CH-------HHHHHSCTTEEEEECSCTTSBCH
T ss_pred             CCCCH---HHh-hhc--CH-------HHHhhCCCCcEEEECCCChhhhH
Confidence            64321   010 000  11       22334478999999974  4444

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=96.80  E-value=0.0062  Score=57.77  Aligned_cols=73  Identities=18%  Similarity=0.308  Sum_probs=51.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc-------------------cchHHHHHHHHHHhhcCCCceEEEc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA-------------------DKLRGEMLDLQHAAAFLPRTKILAS   97 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~v~~t   97 (350)
                      ..||+|||+|.+|+.++..|+..|+ .+|+|+|.+.                   .|++..+..+....   +..++...
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n---p~v~v~~~  193 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGI-GEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRN---SEISVSEI  193 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC-SEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC---TTSEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-CeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHC---CCCeEEEe
Confidence            4689999999999999999999996 6999999863                   24444444444432   34555432


Q ss_pred             CC-------ccccCCCCEEEEec
Q 018760           98 VD-------YAVTAGSDLCIVTA  113 (350)
Q Consensus        98 ~~-------~~al~~aDiVIi~~  113 (350)
                      ..       .+.++++|+||.+.
T Consensus       194 ~~~i~~~~~~~~~~~~DlVvd~~  216 (353)
T 3h5n_A          194 ALNINDYTDLHKVPEADIWVVSA  216 (353)
T ss_dssp             ECCCCSGGGGGGSCCCSEEEECC
T ss_pred             ecccCchhhhhHhccCCEEEEec
Confidence            11       22278999999875

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.79  E-value=0.0017  Score=62.82  Aligned_cols=76  Identities=17%  Similarity=0.195  Sum_probs=52.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCC-CeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCC--CC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFV-EELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAG--SD  107 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~-~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~--aD  107 (350)
                      |+||+|+|||.+|+.++..|++.+-+ .+|++.|++.++++..+..+.....  ........  ++   . +.+++  +|
T Consensus         1 M~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~--~~~~~~~~D~~d~~~l~~~l~~~~~D   78 (405)
T 4ina_A            1 MAKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGY--GEIDITTVDADSIEELVALINEVKPQ   78 (405)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTC--CCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcC--CceEEEEecCCCHHHHHHHHHhhCCC
Confidence            36999999999999999999988743 5899999999988866666553210  11222211  12   2 23555  89


Q ss_pred             EEEEecC
Q 018760          108 LCIVTAG  114 (350)
Q Consensus       108 iVIi~~g  114 (350)
                      +||.+++
T Consensus        79 vVin~ag   85 (405)
T 4ina_A           79 IVLNIAL   85 (405)
T ss_dssp             EEEECSC
T ss_pred             EEEECCC
Confidence            9999976

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=96.79  E-value=0.012  Score=54.55  Aligned_cols=115  Identities=16%  Similarity=0.252  Sum_probs=66.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCCEE
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSDLC  109 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aDiV  109 (350)
                      ++||.|+|| |.+|++++..|++.|.  +|+.++++.++.... ..+..... .....+...  +|   . ++++++|+|
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~--~V~~~~r~~~~~~~~-~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~D~V   84 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGY--AVNTTVRDPDNQKKV-SHLLELQE-LGDLKIFRADLTDELSFEAPIAGCDFV   84 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTC--EEEEEESCTTCTTTT-HHHHHHGG-GSCEEEEECCTTTSSSSHHHHTTCSEE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCcchhhhH-HHHHhcCC-CCcEEEEecCCCChHHHHHHHcCCCEE
Confidence            468999998 9999999999999885  898888876543211 11111110 012222211  12   2 357899999


Q ss_pred             EEecCCCcCcccc-HHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          110 IVTAGARQIAGES-RLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       110 Ii~~g~~~~~g~~-r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      |.+++........ ..+.+..|+.-...+.+.+.+...-..+|++|-
T Consensus        85 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS  131 (338)
T 2rh8_A           85 FHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSS  131 (338)
T ss_dssp             EEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred             EEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEec
Confidence            9988643111111 123556677777777777776531234555553

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=96.78  E-value=0.009  Score=55.35  Aligned_cols=66  Identities=17%  Similarity=0.249  Sum_probs=41.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEE-EEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELA-LVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~-L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g  114 (350)
                      +++||+|||+|.+|..++..|...+-+ +|+ ++|+++++++.        ..    ..+....+..+..++|+|+++.+
T Consensus         8 ~~irv~IIG~G~iG~~~~~~l~~~~~~-elvav~d~~~~~~~~--------~g----~~~~~~~~l~~~~~~DvViiatp   74 (304)
T 3bio_A            8 KKIRAAIVGYGNIGRYALQALREAPDF-EIAGIVRRNPAEVPF--------EL----QPFRVVSDIEQLESVDVALVCSP   74 (304)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHCTTE-EEEEEECC---------------CC----TTSCEESSGGGSSSCCEEEECSC
T ss_pred             CCCEEEEECChHHHHHHHHHHhcCCCC-EEEEEEcCCHHHHHH--------cC----CCcCCHHHHHhCCCCCEEEECCC
Confidence            468999999999999999888875422 665 79999886542        11    11111234444579999999963

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.78  E-value=0.008  Score=56.22  Aligned_cols=72  Identities=22%  Similarity=0.249  Sum_probs=51.7

Q ss_pred             CCeEEEEcCChhHHH-HHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcccc--CCCCEEEEec
Q 018760           37 HTKISVIGTGNVGMA-IAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVT--AGSDLCIVTA  113 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~-~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al--~~aDiVIi~~  113 (350)
                      ++||.|||.|.+|.+ +|..|...|.  +|..+|..+...  ....|...     ..++....+.+.+  .++|+||.+.
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~--~V~~~D~~~~~~--~~~~L~~~-----gi~v~~g~~~~~l~~~~~d~vV~Sp   74 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGF--EVSGCDAKMYPP--MSTQLEAL-----GIDVYEGFDAAQLDEFKADVYVIGN   74 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTC--EEEEEESSCCTT--HHHHHHHT-----TCEEEESCCGGGGGSCCCSEEEECT
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCC--EEEEEcCCCCcH--HHHHHHhC-----CCEEECCCCHHHcCCCCCCEEEECC
Confidence            569999999999996 8888999996  999999975321  12234432     3455544455566  4899999998


Q ss_pred             CCCc
Q 018760          114 GARQ  117 (350)
Q Consensus       114 g~~~  117 (350)
                      |.|.
T Consensus        75 gi~~   78 (326)
T 3eag_A           75 VAKR   78 (326)
T ss_dssp             TCCT
T ss_pred             CcCC
Confidence            8764

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=96.77  E-value=0.003  Score=61.01  Aligned_cols=104  Identities=14%  Similarity=0.247  Sum_probs=65.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      +..+|+|||+|.+|..++..+...|. .+|+++|+++++++..+..+.        ..+....+. +.+.++|+||.+.+
T Consensus       166 ~g~~VlIiGaG~iG~~~a~~l~~~G~-~~V~v~~r~~~ra~~la~~~g--------~~~~~~~~l~~~l~~aDvVi~at~  236 (404)
T 1gpj_A          166 HDKTVLVVGAGEMGKTVAKSLVDRGV-RAVLVANRTYERAVELARDLG--------GEAVRFDELVDHLARSDVVVSATA  236 (404)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCC-SEEEEECSSHHHHHHHHHHHT--------CEECCGGGHHHHHHTCSEEEECCS
T ss_pred             cCCEEEEEChHHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcC--------CceecHHhHHHHhcCCCEEEEccC
Confidence            45699999999999999999888874 589999999877643332221        122111233 45789999999976


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhh-ccCCCeEEEEEcCCcch
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLV-KYSPDCILLIVANPVDI  159 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~-~~~p~a~viv~tNP~~~  159 (350)
                      .+... .        +...+...  .++ +..+..+++.++.|-++
T Consensus       237 ~~~~~-~--------~~~~l~~~--~lk~r~~~~~v~vdia~P~~i  271 (404)
T 1gpj_A          237 APHPV-I--------HVDDVREA--LRKRDRRSPILIIDIANPRDV  271 (404)
T ss_dssp             SSSCC-B--------CHHHHHHH--HHHCSSCCCEEEEECCSSCSB
T ss_pred             CCCce-e--------cHHHHHHH--HHhccCCCCEEEEEccCCCCC
Confidence            54311 1        11111110  121 22456778888888764

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=96.77  E-value=0.0037  Score=57.20  Aligned_cols=104  Identities=15%  Similarity=0.262  Sum_probs=67.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC--c-cccCCCCEEEE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD--Y-AVTAGSDLCIV  111 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~--~-~al~~aDiVIi  111 (350)
                      |||.|+|| |.+|++++..|+..|.  +|+++|++.+......    .     ....+...  +|  . +++++ |+||.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~----~-----~~~~~~~~Dl~d~~~~~~~~~-d~vih   68 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY--EVVVVDNLSSGRREFV----N-----PSAELHVRDLKDYSWGAGIKG-DVVFH   68 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSCCGGGS----C-----TTSEEECCCTTSTTTTTTCCC-SEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCCchhhc----C-----CCceEEECccccHHHHhhcCC-CEEEE
Confidence            68999999 9999999999999985  9999999775443211    0     11222211  11  2 23555 99999


Q ss_pred             ecCCCcC--ccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          112 TAGARQI--AGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       112 ~~g~~~~--~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +++.+..  ........+..|+.-...+++.+.+....- +|.+|
T Consensus        69 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~-iv~~S  112 (312)
T 3ko8_A           69 FAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRT-VVFAS  112 (312)
T ss_dssp             CCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCE-EEEEE
T ss_pred             CCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEeC
Confidence            9875421  122344556678888888888887765443 44444

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=96.76  E-value=0.009  Score=57.57  Aligned_cols=113  Identities=12%  Similarity=0.122  Sum_probs=68.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccc---hHHHHHHHHHHh------hcCCCceEEEcCCc-----
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADK---LRGEMLDLQHAA------AFLPRTKILASVDY-----  100 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~---l~~~~~dl~~~~------~~~~~~~v~~t~~~-----  100 (350)
                      ++++|.|+|| |.+|+.++..|+..+.  +|++++++++.   ++.....+....      .......+... |.     
T Consensus        68 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~-Dl~d~~~  144 (427)
T 4f6c_A           68 PLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVG-DFECMDD  144 (427)
T ss_dssp             CCEEEEEECTTSHHHHHHHHHHTTTEE--EEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEE-CC---CC
T ss_pred             CCCEEEEecCCcHHHHHHHHHHHcCCC--EEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeC-CCCCccc
Confidence            4568999999 9999999999977774  89999998873   222222222210      00122333321 32     


Q ss_pred             -cccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          101 -AVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       101 -~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                       +++.++|+||.+++..... .........|+.-...+++.+.+ . ...+|.+|
T Consensus       145 l~~~~~~d~Vih~A~~~~~~-~~~~~~~~~Nv~g~~~l~~aa~~-~-~~~~v~~S  196 (427)
T 4f6c_A          145 VVLPENMDTIIHAGARTDHF-GDDDEFEKVNVQGTVDVIRLAQQ-H-HARLIYVS  196 (427)
T ss_dssp             CCCSSCCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHH-T-TCEEEEEE
T ss_pred             CCCcCCCCEEEECCcccCCC-CCHHHHHHHHHHHHHHHHHHHHh-c-CCcEEEEC
Confidence             2467899999998754321 22334456688888888888777 3 33455554

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=96.76  E-value=0.021  Score=51.85  Aligned_cols=114  Identities=16%  Similarity=0.162  Sum_probs=67.1

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCC----------------ccchHHHHHHHHHHhhcCCCceEEEc--
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAK----------------ADKLRGEMLDLQHAAAFLPRTKILAS--   97 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~----------------~~~l~~~~~dl~~~~~~~~~~~v~~t--   97 (350)
                      .+++.|+|| |.+|..++..|++.|.  +|+++|++                +++++.....+...   .........  
T Consensus        11 ~k~~lVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv   85 (286)
T 3uve_A           11 GKVAFVTGAARGQGRSHAVRLAQEGA--DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH---NRRIVTAEVDV   85 (286)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT---TCCEEEEECCT
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeccccccccccccccccCCHHHHHHHHHHHhhc---CCceEEEEcCC
Confidence            457888898 8999999999999995  89999987                33333322222221   112222211  


Q ss_pred             CCccc-----------cCCCCEEEEecCCCcCcc----ccHH---HHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760           98 VDYAV-----------TAGSDLCIVTAGARQIAG----ESRL---NLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus        98 ~~~~a-----------l~~aDiVIi~~g~~~~~g----~~r~---~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +|.+.           +...|++|.++|......    .+..   ..+.-|    ..+.+.+.+.+.+..+.+.||++|-
T Consensus        86 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  165 (286)
T 3uve_A           86 RDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSS  165 (286)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence            12211           137899999998643211    1221   223333    4456666666666555677777764

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=96.76  E-value=0.026  Score=51.33  Aligned_cols=119  Identities=18%  Similarity=0.245  Sum_probs=68.7

Q ss_pred             CCCCCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccc-------hHHHHHHHHHHhhcCCCceEEEc--CCc
Q 018760           31 PSPTKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADK-------LRGEMLDLQHAAAFLPRTKILAS--VDY  100 (350)
Q Consensus        31 ~~~~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~-------l~~~~~dl~~~~~~~~~~~v~~t--~~~  100 (350)
                      ++|..+.+++.|+|| |.+|..++..|++.|.  +|+++|+++++       ++....++....   ........  +|.
T Consensus         3 ~~m~l~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~   77 (285)
T 3sc4_A            3 GSMSLRGKTMFISGGSRGIGLAIAKRVAADGA--NVALVAKSAEPHPKLPGTIYTAAKEIEEAG---GQALPIVGDIRDG   77 (285)
T ss_dssp             ---CCTTCEEEEESCSSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHHT---SEEEEEECCTTSH
T ss_pred             CCcCCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECChhhhhhhhHHHHHHHHHHHhcC---CcEEEEECCCCCH
Confidence            344455668889998 8999999999999985  89999998763       444444444322   11222211  121


Q ss_pred             c----cc-------CCCCEEEEecCCCcCc---cccH---HHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760          101 A----VT-------AGSDLCIVTAGARQIA---GESR---LNLLQRNL----SLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       101 ~----al-------~~aDiVIi~~g~~~~~---g~~r---~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +    .+       ...|++|.++|.....   ..+.   ...+.-|+    .+.+.+.+.|.+. ..+.||++|-
T Consensus        78 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS  152 (285)
T 3sc4_A           78 DAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGR-DNPHILTLSP  152 (285)
T ss_dssp             HHHHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTS-SSCEEEECCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECC
Confidence            1    12       3789999999864311   1121   22233443    3455555555543 3456777764

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=96.74  E-value=0.0017  Score=60.22  Aligned_cols=113  Identities=15%  Similarity=0.195  Sum_probs=68.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccCC--CC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAG--SD  107 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~--aD  107 (350)
                      .+||.|+|| |.+|++++..|++.|.  +|+++|+++++...  ..+..... .....+...  +|.    +.+++  .|
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~--~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d   77 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGY--EVYGADRRSGEFAS--WRLKELGI-ENDVKIIHMDLLEFSNIIRTIEKVQPD   77 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCCSTTTT--HHHHHTTC-TTTEEECCCCTTCHHHHHHHHHHHCCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCccccc--ccHhhccc-cCceeEEECCCCCHHHHHHHHHhcCCC
Confidence            468999999 9999999999999885  99999998765432  12222110 011222211  122    23443  59


Q ss_pred             EEEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          108 LCIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       108 iVIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +||.+++.....  .......+..|+.-...+++.+.+......+|.+|
T Consensus        78 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~S  126 (345)
T 2z1m_A           78 EVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQAS  126 (345)
T ss_dssp             EEEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EEEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEe
Confidence            999998854211  12234455667776777777776654334455554

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=96.74  E-value=0.0018  Score=61.19  Aligned_cols=71  Identities=17%  Similarity=0.273  Sum_probs=49.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhc-CCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-cC--CCCEE
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQ-DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-TA--GSDLC  109 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~-~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l~--~aDiV  109 (350)
                      ..+++||+|||+|.+|...+..|... +-+.-+.++|+++++++..    ....    ..  ...+++++ ++  ++|+|
T Consensus        10 ~~~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~----~~~~----~~--~~~~~~~~ll~~~~~D~V   79 (354)
T 3q2i_A           10 TDRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAA----VERT----GA--RGHASLTDMLAQTDADIV   79 (354)
T ss_dssp             CSSCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHH----HHHH----CC--EEESCHHHHHHHCCCSEE
T ss_pred             CCCcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHH----HHHc----CC--ceeCCHHHHhcCCCCCEE
Confidence            34668999999999999999888877 3222244899999876642    2222    12  33457754 54  89999


Q ss_pred             EEecC
Q 018760          110 IVTAG  114 (350)
Q Consensus       110 Ii~~g  114 (350)
                      +++..
T Consensus        80 ~i~tp   84 (354)
T 3q2i_A           80 ILTTP   84 (354)
T ss_dssp             EECSC
T ss_pred             EECCC
Confidence            99853

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=96.73  E-value=0.0041  Score=55.26  Aligned_cols=115  Identities=15%  Similarity=0.184  Sum_probs=67.5

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-------ccc
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-------AVT  103 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-------~al  103 (350)
                      ..+.++|.|+|| |.+|..++..|++.|.  +|++.|+++++++....++..      ...+...  ++.       +.+
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~   82 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGS--KVIISGSNEEKLKSLGNALKD------NYTIEVCNLANKEECSNLISKT   82 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCS------SEEEEECCTTSHHHHHHHHHTC
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhcc------CccEEEcCCCCHHHHHHHHHhc
Confidence            445678999998 9999999999999995  899999998877654433321      1222221  111       123


Q ss_pred             CCCCEEEEecCCCcCc------cccHHHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcCCc
Q 018760          104 AGSDLCIVTAGARQIA------GESRLNLLQRN----LSLFKAIIPPLVKYSPDCILLIVANPV  157 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~------g~~r~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNP~  157 (350)
                      ...|++|.++|.....      .+.-...+.-|    ..+.+.+.+.+.+. ..+.+|++|-..
T Consensus        83 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~  145 (249)
T 3f9i_A           83 SNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQK-RYGRIINISSIV  145 (249)
T ss_dssp             SCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCCC
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEccHH
Confidence            4789999998864311      11112233334    34455555555543 346677776443

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=96.73  E-value=0.0037  Score=59.63  Aligned_cols=96  Identities=20%  Similarity=0.241  Sum_probs=61.7

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCe-EEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEE
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEE-LALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIV  111 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~e-v~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi  111 (350)
                      +...++|+|||.|.||..+|..+...|.  + |+.+|+++...+.    .. ..    .  +....+. +.++.||+|++
T Consensus       161 ~l~g~tvgIIG~G~IG~~vA~~l~~~G~--~~V~~~d~~~~~~~~----~~-~~----g--~~~~~~l~ell~~aDvV~l  227 (364)
T 2j6i_A          161 DIEGKTIATIGAGRIGYRVLERLVPFNP--KELLYYDYQALPKDA----EE-KV----G--ARRVENIEELVAQADIVTV  227 (364)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHGGGCC--SEEEEECSSCCCHHH----HH-HT----T--EEECSSHHHHHHTCSEEEE
T ss_pred             cCCCCEEEEECcCHHHHHHHHHHHhCCC--cEEEEECCCccchhH----HH-hc----C--cEecCCHHHHHhcCCEEEE
Confidence            4456799999999999999999887774  6 9999998765431    11 11    1  2223355 56889999999


Q ss_pred             ecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          112 TAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       112 ~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +.....   +++. ++  |    .   ..+....|++++|+++.
T Consensus       228 ~~P~t~---~t~~-li--~----~---~~l~~mk~ga~lIn~ar  258 (364)
T 2j6i_A          228 NAPLHA---GTKG-LI--N----K---ELLSKFKKGAWLVNTAR  258 (364)
T ss_dssp             CCCCST---TTTT-CB--C----H---HHHTTSCTTEEEEECSC
T ss_pred             CCCCCh---HHHH-Hh--C----H---HHHhhCCCCCEEEECCC
Confidence            964321   1110 00  1    1   12333467899999975

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=96.72  E-value=0.0014  Score=61.53  Aligned_cols=68  Identities=21%  Similarity=0.253  Sum_probs=47.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEE-EEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccC--CCCEEEE
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELA-LVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTA--GSDLCIV  111 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~-L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~--~aDiVIi  111 (350)
                      +++||+|||+|.+|...+..|...+-+ +|+ ++|+++++++.    +....    ..++  .++++ .++  ++|+|++
T Consensus         3 ~~~rvgiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~----~a~~~----g~~~--~~~~~~~l~~~~~D~V~i   71 (344)
T 3euw_A            3 LTLRIALFGAGRIGHVHAANIAANPDL-ELVVIADPFIEGAQR----LAEAN----GAEA--VASPDEVFARDDIDGIVI   71 (344)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHCTTE-EEEEEECSSHHHHHH----HHHTT----TCEE--ESSHHHHTTCSCCCEEEE
T ss_pred             CceEEEEECCcHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHH----HHHHc----CCce--eCCHHHHhcCCCCCEEEE
Confidence            457999999999999999888876432 544 89999887653    22221    1233  45664 455  8999999


Q ss_pred             ecC
Q 018760          112 TAG  114 (350)
Q Consensus       112 ~~g  114 (350)
                      +..
T Consensus        72 ~tp   74 (344)
T 3euw_A           72 GSP   74 (344)
T ss_dssp             CSC
T ss_pred             eCC
Confidence            864

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=96.72  E-value=0.017  Score=51.64  Aligned_cols=113  Identities=14%  Similarity=0.170  Sum_probs=70.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c-----
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T-----  103 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l-----  103 (350)
                      +.+++.|+|| |.+|..++..|++.|.  +|+++|+++++++....++....   ........  +|.++    +     
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF--TVFAGRRNGEKLAPLVAEIEAAG---GRIVARSLDARNEDEVTAFLNAADA   80 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTT---CEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CeEEEEECcCCCHHHHHHHHHHHHh
Confidence            3457889998 8999999999999996  89999999998887666665432   11222211  12211    2     


Q ss_pred             -CCCCEEEEecCCCcCc---cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEc
Q 018760          104 -AGSDLCIVTAGARQIA---GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       104 -~~aDiVIi~~g~~~~~---g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                       ...|++|..+|.....   ..+.   ...+.-|    ..+.+.+.+.+.+.. .+.||++|
T Consensus        81 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~is  141 (252)
T 3h7a_A           81 HAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHG-QGKIFFTG  141 (252)
T ss_dssp             HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEE
T ss_pred             hCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEC
Confidence             2569999998864321   1121   1223333    345566666666543 45566665

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.72  E-value=0.0088  Score=50.87  Aligned_cols=100  Identities=16%  Similarity=0.272  Sum_probs=63.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccCCCCEEE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAGSDLCI  110 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~aDiVI  110 (350)
                      |||.|+|| |.+|+.++..|+..+.  +|++++++++++..    +.     .....+...  +|.    ++++++|+||
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~----~~-----~~~~~~~~~D~~~~~~~~~~~~~~d~vi   72 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRLPS----EG-----PRPAHVVVGDVLQAADVDKTVAGQDAVI   72 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGGSCS----SS-----CCCSEEEESCTTSHHHHHHHHTTCSEEE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--eEEEEEeChhhccc----cc-----CCceEEEEecCCCHHHHHHHHcCCCEEE
Confidence            79999999 9999999999999884  99999998865431    00     112333322  122    3578899999


Q ss_pred             EecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          111 VTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       111 i~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      .+++........     ..|......+++.+.+.... .+|.+|
T Consensus        73 ~~a~~~~~~~~~-----~~n~~~~~~~~~~~~~~~~~-~~v~~S  110 (206)
T 1hdo_A           73 VLLGTRNDLSPT-----TVMSEGARNIVAAMKAHGVD-KVVACT  110 (206)
T ss_dssp             ECCCCTTCCSCC-----CHHHHHHHHHHHHHHHHTCC-EEEEEC
T ss_pred             ECccCCCCCCcc-----chHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence            998754321111     13555566666666665433 344554

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=96.71  E-value=0.007  Score=54.47  Aligned_cols=100  Identities=18%  Similarity=0.226  Sum_probs=68.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccCCCCEEE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAGSDLCI  110 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~aDiVI  110 (350)
                      ++|.|+|| |.+|+.++..|+..+.  +|++.|+++++...            ....+...  +|.    +.+++.|+||
T Consensus         4 k~vlVTGasg~IG~~la~~L~~~G~--~V~~~~r~~~~~~~------------~~~~~~~~Dl~d~~~~~~~~~~~D~vi   69 (267)
T 3rft_A            4 KRLLVTGAAGQLGRVMRERLAPMAE--ILRLADLSPLDPAG------------PNEECVQCDLADANAVNAMVAGCDGIV   69 (267)
T ss_dssp             EEEEEESTTSHHHHHHHHHTGGGEE--EEEEEESSCCCCCC------------TTEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCC--EEEEEecCCccccC------------CCCEEEEcCCCCHHHHHHHHcCCCEEE
Confidence            57999998 9999999999999884  89999998865530            11222211  121    3477899999


Q ss_pred             EecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          111 VTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       111 i~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      .++|....  ..-.+.+..|+.-...+.+.+.+.... .+|++|
T Consensus        70 ~~Ag~~~~--~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~S  110 (267)
T 3rft_A           70 HLGGISVE--KPFEQILQGNIIGLYNLYEAARAHGQP-RIVFAS  110 (267)
T ss_dssp             ECCSCCSC--CCHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             ECCCCcCc--CCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            99987421  223455667887777888888776544 455554

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.71  E-value=0.012  Score=54.12  Aligned_cols=116  Identities=12%  Similarity=0.194  Sum_probs=67.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c-----
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T-----  103 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l-----  103 (350)
                      +.+++.|+|| |.+|..++..|+..|.  +|+++|+++++++....++...........+...  +|.++    +     
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  102 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA  102 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            3457888898 8999999999999985  8999999988777555555432100001222211  12111    2     


Q ss_pred             --CCCCEEEEecCCCcC-c----cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 --AGSDLCIVTAGARQI-A----GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 --~~aDiVIi~~g~~~~-~----g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                        ...|+||.++|.... +    ..+.   ...+.-|    ..+.+.+.+.+.+..  +.||++|-
T Consensus       103 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--g~IV~isS  166 (297)
T 1xhl_A          103 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK--GEIVNVSS  166 (297)
T ss_dssp             HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEECC
T ss_pred             hcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CEEEEEcC
Confidence              278999999886432 1    1121   1223334    344555555555433  66777753

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=96.71  E-value=0.016  Score=51.73  Aligned_cols=118  Identities=14%  Similarity=0.208  Sum_probs=70.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----------  102 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----------  102 (350)
                      +.+++.|+|| |.+|..++..|++.|.  +|+++|+++++++....++...........+...  +|.++          
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGY--RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ   83 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTC--EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence            3457888998 8999999999999995  8999999998887766666543211012222211  12111          


Q ss_pred             -cCCCCEEEEecCCCcCc--cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          103 -TAGSDLCIVTAGARQIA--GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       103 -l~~aDiVIi~~g~~~~~--g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                       +...|++|.++|.....  ..+.   ...+.-|    ..+.+.+.+.+.+.. .+.||+++-.
T Consensus        84 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~  146 (250)
T 3nyw_A           84 KYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQK-NGYIFNVASR  146 (250)
T ss_dssp             HHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC-
T ss_pred             hcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEEccH
Confidence             13689999999864321  1111   1223333    345555556555533 4667777643

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=96.70  E-value=0.005  Score=50.73  Aligned_cols=61  Identities=13%  Similarity=0.194  Sum_probs=40.0

Q ss_pred             CCeEEEEcC----ChhHHHHHHHHHhcCCCCeEEEEeCCccch-HHHHHHHHHHhhcCCCceEEEcCCccc-cCCCCEEE
Q 018760           37 HTKISVIGT----GNVGMAIAQTILTQDFVEELALVDAKADKL-RGEMLDLQHAAAFLPRTKILASVDYAV-TAGSDLCI  110 (350)
Q Consensus        37 ~~KI~IIGA----G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l-~~~~~dl~~~~~~~~~~~v~~t~~~~a-l~~aDiVI  110 (350)
                      +.+|+|||+    |++|..++..|...|+  +  ++++|+.+. +.    +   .    ..++  ..+.++ ...+|+|+
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~--~--v~~vnp~~~g~~----i---~----G~~~--~~sl~el~~~~Dlvi   75 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGY--H--VIPVSPKVAGKT----L---L----GQQG--YATLADVPEKVDMVD   75 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTC--C--EEEECSSSTTSE----E---T----TEEC--CSSTTTCSSCCSEEE
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCC--E--EEEeCCcccccc----c---C----Ceec--cCCHHHcCCCCCEEE
Confidence            458999999    7899999999999886  5  555555432 10    0   1    1122  234433 45789999


Q ss_pred             EecC
Q 018760          111 VTAG  114 (350)
Q Consensus       111 i~~g  114 (350)
                      ++..
T Consensus        76 i~vp   79 (145)
T 2duw_A           76 VFRN   79 (145)
T ss_dssp             CCSC
T ss_pred             EEeC
Confidence            9953

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=96.70  E-value=0.013  Score=52.58  Aligned_cols=75  Identities=11%  Similarity=0.128  Sum_probs=49.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c-----
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T-----  103 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l-----  103 (350)
                      +.++|.|+|| |.+|..++..|+..|.  +|+++|+++++++....++..    .....+...  +|.++    +     
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~   88 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGS----PDVISFVHCDVTKDEDVRNLVDTTIA   88 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCC----TTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCChhHHHHHHHHhCC----CCceEEEECCCCCHHHHHHHHHHHHH
Confidence            4568999998 9999999999999985  899999987665533333311    012222211  12211    2     


Q ss_pred             --CCCCEEEEecCCC
Q 018760          104 --AGSDLCIVTAGAR  116 (350)
Q Consensus       104 --~~aDiVIi~~g~~  116 (350)
                        ...|+||.++|..
T Consensus        89 ~~~~id~li~~Ag~~  103 (278)
T 2bgk_A           89 KHGKLDIMFGNVGVL  103 (278)
T ss_dssp             HHSCCCEEEECCCCC
T ss_pred             HcCCCCEEEECCccc
Confidence              2789999998854

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=96.69  E-value=0.00091  Score=64.58  Aligned_cols=90  Identities=22%  Similarity=0.276  Sum_probs=46.6

Q ss_pred             CCCCCCCCCCCCccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcC-----CCC--e-EEEEeCCcc
Q 018760            2 HKTPSGSSLGPGGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQD-----FVE--E-LALVDAKAD   73 (350)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~-----~~~--e-v~L~D~~~~   73 (350)
                      |...+|++||...+.|.              +|.+++||+|||+|.+|...+..+...+     +..  + +.++|++++
T Consensus         5 ~~~~~~~~~~~~~~~~~--------------~Ms~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~   70 (412)
T 4gqa_A            5 HHHSSGVDLGTENLYFQ--------------SMSARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQA   70 (412)
T ss_dssp             ----------------------------------CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHH
T ss_pred             cccccccccccccCccc--------------cccccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHH
Confidence            44568888887766551              1345689999999999998887776542     111  3 457899998


Q ss_pred             chHHHHHHHHHHhhcCCCceEEEcCCccc-c--CCCCEEEEecC
Q 018760           74 KLRGEMLDLQHAAAFLPRTKILASVDYAV-T--AGSDLCIVTAG  114 (350)
Q Consensus        74 ~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l--~~aDiVIi~~g  114 (350)
                      +++..+..    ..   ..++  .+|+++ +  .+.|+|+++..
T Consensus        71 ~a~~~a~~----~~---~~~~--y~d~~~ll~~~~vD~V~I~tp  105 (412)
T 4gqa_A           71 MAERHAAK----LG---AEKA--YGDWRELVNDPQVDVVDITSP  105 (412)
T ss_dssp             HHHHHHHH----HT---CSEE--ESSHHHHHHCTTCCEEEECSC
T ss_pred             HHHHHHHH----cC---CCeE--ECCHHHHhcCCCCCEEEECCC
Confidence            87743332    21   1233  457754 4  46899999853

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.69  E-value=0.00099  Score=61.98  Aligned_cols=108  Identities=17%  Similarity=0.164  Sum_probs=67.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccC--CC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTA--GS  106 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~--~a  106 (350)
                      +.|+|.|+|| |.+|+.++..|+..|.  +|+++|++.+........+       ....+...  +|.    +.++  ++
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~l-------~~v~~~~~Dl~d~~~~~~~~~~~~~   89 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGH--EILVIDNFATGKREVLPPV-------AGLSVIEGSVTDAGLLERAFDSFKP   89 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTC--EEEEEECCSSSCGGGSCSC-------TTEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCccchhhhhcc-------CCceEEEeeCCCHHHHHHHHhhcCC
Confidence            3579999999 9999999999999884  9999999654322100011       12222211  122    2356  89


Q ss_pred             CEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          107 DLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       107 DiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |+||.+++..........+ +..|+.-...+++.+.+.... .+|++|
T Consensus        90 D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~~-~iV~~S  135 (330)
T 2pzm_A           90 THVVHSAAAYKDPDDWAED-AATNVQGSINVAKAASKAGVK-RLLNFQ  135 (330)
T ss_dssp             SEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHHTCS-EEEEEE
T ss_pred             CEEEECCccCCCccccChh-HHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence            9999998764321122233 566777777777777765433 455554

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.69  E-value=0.012  Score=52.84  Aligned_cols=115  Identities=15%  Similarity=0.207  Sum_probs=69.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c-----
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T-----  103 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l-----  103 (350)
                      +.+++.|+|| |.+|..++..|++.|.  +|++.|+++++++....++.....  ........  +|.++    +     
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGA--NVAVAGRSTADIDACVADLDQLGS--GKVIGVQTDVSDRAQCDALAGRAVE   84 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTSS--SCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhCC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            4457888898 8999999999999996  899999999888766666654220  12222211  12211    1     


Q ss_pred             --CCCCEEEEecCCCcC-c--cccHH---HHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 --AGSDLCIVTAGARQI-A--GESRL---NLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 --~~aDiVIi~~g~~~~-~--g~~r~---~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                        ...|++|.++|.... +  ..+..   ..+.-|    ..+.+.+.+.|.+.. .+.+|++|-
T Consensus        85 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS  147 (262)
T 3pk0_A           85 EFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASG-SGRVVLTSS  147 (262)
T ss_dssp             HHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHS-SCEEEEECC
T ss_pred             HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEec
Confidence              278999999886432 1  11221   223334    344555566665544 345666653

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=96.69  E-value=0.0045  Score=59.57  Aligned_cols=96  Identities=11%  Similarity=0.205  Sum_probs=61.2

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      +...++|+|||.|.||..+|..+...|.  +|+.+|++....+     .....    ...  ...+. +.++.||+|+++
T Consensus       188 ~l~gktvGIIGlG~IG~~vA~~l~a~G~--~V~~~d~~~~~~~-----~~~~~----G~~--~~~~l~ell~~aDvV~l~  254 (393)
T 2nac_A          188 DLEAMHVGTVAAGRIGLAVLRRLAPFDV--HLHYTDRHRLPES-----VEKEL----NLT--WHATREDMYPVCDVVTLN  254 (393)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTC--EEEEECSSCCCHH-----HHHHH----TCE--ECSSHHHHGGGCSEEEEC
T ss_pred             cCCCCEEEEEeECHHHHHHHHHHHhCCC--EEEEEcCCccchh-----hHhhc----Cce--ecCCHHHHHhcCCEEEEe
Confidence            4456799999999999999999888775  8999999875433     11111    111  12344 568899999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      .....   +++ .++  |    .   ..+....|++++|+++.
T Consensus       255 ~Plt~---~t~-~li--~----~---~~l~~mk~gailIN~aR  284 (393)
T 2nac_A          255 CPLHP---ETE-HMI--N----D---ETLKLFKRGAYIVNTAR  284 (393)
T ss_dssp             SCCCT---TTT-TCB--S----H---HHHTTSCTTEEEEECSC
T ss_pred             cCCch---HHH-HHh--h----H---HHHhhCCCCCEEEECCC
Confidence            64321   111 000  1    1   12233467899999974

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=96.69  E-value=0.028  Score=50.15  Aligned_cols=113  Identities=16%  Similarity=0.202  Sum_probs=68.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc-------
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT-------  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al-------  103 (350)
                      +++.|+|| |.+|..++..|++.|.  +|++.|+++++++....++....   ........  +|.+    .+       
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~~   77 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAG---GHAVAVKVDVSDRDQVFAAVEQARKTL   77 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence            46889998 8999999999999995  89999999887765555554321   12222211  1221    12       


Q ss_pred             CCCCEEEEecCCCcC-c--cccH---HHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 AGSDLCIVTAGARQI-A--GESR---LNLLQRNL----SLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~-~--g~~r---~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ...|++|.++|.... +  ..+.   ...+.-|+    .+.+.+.+.+.+..+.+.+|++|-
T Consensus        78 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  139 (256)
T 1geg_A           78 GGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACS  139 (256)
T ss_dssp             TCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECc
Confidence            278999999886432 1  1121   12233343    345566666665443466777753

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=96.68  E-value=0.019  Score=52.06  Aligned_cols=116  Identities=14%  Similarity=0.169  Sum_probs=69.3

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T------  103 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l------  103 (350)
                      .+++.|+|| |.+|.+++..|++.|.  +|+++|+++++++....++...............  +|.++    +      
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (281)
T 3svt_A           11 DRTYLVTGGGSGIGKGVAAGLVAAGA--SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW   88 (281)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            457889998 8999999999999995  8999999998887666666542210001222211  12111    2      


Q ss_pred             -CCCCEEEEecCCCcC--c--cccH---HHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 -AGSDLCIVTAGARQI--A--GESR---LNLLQRNL----SLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 -~~aDiVIi~~g~~~~--~--g~~r---~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                       ...|++|.++|....  +  ..+.   ...+.-|+    .+.+...+.+.+ ...+.||++|-
T Consensus        89 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~-~~~g~iv~isS  151 (281)
T 3svt_A           89 HGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVR-GGGGSFVGISS  151 (281)
T ss_dssp             HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCEEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-cCCcEEEEEeC
Confidence             267999999886221  1  1121   22333443    345555555554 34566777753

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=96.68  E-value=0.016  Score=52.39  Aligned_cols=112  Identities=15%  Similarity=0.149  Sum_probs=68.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------c
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------T  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------l  103 (350)
                      +++.|+|| |.+|..++..|++.|.  +|+++|+++++++....++....   ........  +|.++           +
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~  103 (270)
T 3ftp_A           29 QVAIVTGASRGIGRAIALELARRGA--MVIGTATTEAGAEGIGAAFKQAG---LEGRGAVLNVNDATAVDALVESTLKEF  103 (270)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHT---CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence            46777798 8999999999999996  89999999988776666665432   12222211  12111           2


Q ss_pred             CCCCEEEEecCCCcCc---cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 AGSDLCIVTAGARQIA---GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~---g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ...|++|.++|.....   ..+.   ...+.-|    ..+.+.+.+.+.+. ..+.||++|-
T Consensus       104 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS  164 (270)
T 3ftp_A          104 GALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKA-RGGRIVNITS  164 (270)
T ss_dssp             SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECc
Confidence            3789999999864321   1121   1223334    33455555555543 3466777753

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=96.68  E-value=0.018  Score=51.20  Aligned_cols=114  Identities=12%  Similarity=0.143  Sum_probs=67.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeC-CccchHHHHHHHHHHhhcCCCceEEEc--CCcc----ccC----
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDA-KADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VTA----  104 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~-~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al~----  104 (350)
                      .++|.|+|| |.+|..++..|+..|.  +|+++++ ++++++....++....   ....+...  ++.+    .++    
T Consensus         7 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~   81 (261)
T 1gee_A            7 GKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG---GEAIAVKGDVTVESDVINLVQSAIK   81 (261)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT---CEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhcC---CceEEEECCCCCHHHHHHHHHHHHH
Confidence            357889998 9999999999999985  8999999 7766655444444321   11222211  1211    122    


Q ss_pred             ---CCCEEEEecCCCcCc---cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          105 ---GSDLCIVTAGARQIA---GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       105 ---~aDiVIi~~g~~~~~---g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                         +.|+||.++|.....   ..+.   ...+..|    ..+.+.+.+.+.+..+.+.+|++|-
T Consensus        82 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS  145 (261)
T 1gee_A           82 EFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSS  145 (261)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence               789999998864321   1121   2223334    3344555555555443456777654

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=96.68  E-value=0.014  Score=53.13  Aligned_cols=110  Identities=15%  Similarity=0.200  Sum_probs=66.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------  102 (350)
                      .+++.|+|| |.+|.+++..|++.|.  +|+++|+++++++....++.      ........  +|.++           
T Consensus        29 gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~~~~  100 (277)
T 3gvc_A           29 GKVAIVTGAGAGIGLAVARRLADEGC--HVLCADIDGDAADAAATKIG------CGAAACRVDVSDEQQIIAMVDACVAA  100 (277)
T ss_dssp             TCEEEETTTTSTHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHC------SSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC------CcceEEEecCCCHHHHHHHHHHHHHH
Confidence            346778898 8999999999999995  99999999887765444331      11222211  12211           


Q ss_pred             cCCCCEEEEecCCCcCc---cccH---HHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 TAGSDLCIVTAGARQIA---GESR---LNLLQRNL----SLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~~---g~~r---~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +...|++|.++|.....   ..+.   ...+.-|+    .+.+.+.+.+.+. ..+.||++|-
T Consensus       101 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS  162 (277)
T 3gvc_A          101 FGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIER-GGGAIVNLSS  162 (277)
T ss_dssp             HSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence            23789999998864321   1121   22233343    3455566666543 3566777764

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.68  E-value=0.02  Score=51.66  Aligned_cols=115  Identities=13%  Similarity=0.155  Sum_probs=68.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c-----
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T-----  103 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l-----  103 (350)
                      +.+++.|+|| |.+|..++..|++.|.  +|+++|+++++++....++.....  ........  ++.++    +     
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~   95 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKE   95 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            3457889998 9999999999999985  899999998877655555522211  12222211  12211    1     


Q ss_pred             --CCCCEEEEecCCCcCc---cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 --AGSDLCIVTAGARQIA---GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 --~~aDiVIi~~g~~~~~---g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                        ...|++|.++|.....   ..+.   ...+.-|    ..+.+.+.+.|.+.. .+.||++|-
T Consensus        96 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS  158 (267)
T 1vl8_A           96 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD-NPSIINIGS  158 (267)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS-SCEEEEECC
T ss_pred             HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEECC
Confidence              2789999998864321   1121   1223334    334455556665533 355666653

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=96.68  E-value=0.0025  Score=60.37  Aligned_cols=93  Identities=14%  Similarity=0.240  Sum_probs=61.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      +...++|+|||.|.+|..+|..+...|.  +|..+|+++...+.     ..  .      +....+. +.+++||+|+++
T Consensus       170 ~l~gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~-----~~--g------~~~~~~l~ell~~sDvV~l~  234 (345)
T 4g2n_A          170 GLTGRRLGIFGMGRIGRAIATRARGFGL--AIHYHNRTRLSHAL-----EE--G------AIYHDTLDSLLGASDIFLIA  234 (345)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHTTTC--EEEEECSSCCCHHH-----HT--T------CEECSSHHHHHHTCSEEEEC
T ss_pred             ccCCCEEEEEEeChhHHHHHHHHHHCCC--EEEEECCCCcchhh-----hc--C------CeEeCCHHHHHhhCCEEEEe
Confidence            3456799999999999999999987775  99999998654321     11  1      1112355 568999999999


Q ss_pred             cCCCc-CccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          113 AGARQ-IAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       113 ~g~~~-~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ..... ..+.     +  |.       +.+....|.+++|+++.
T Consensus       235 ~Plt~~T~~l-----i--~~-------~~l~~mk~gailIN~aR  264 (345)
T 4g2n_A          235 APGRPELKGF-----L--DH-------DRIAKIPEGAVVINISR  264 (345)
T ss_dssp             SCCCGGGTTC-----B--CH-------HHHHHSCTTEEEEECSC
T ss_pred             cCCCHHHHHH-----h--CH-------HHHhhCCCCcEEEECCC
Confidence            64321 1111     0  11       12333468999999974

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=96.66  E-value=0.014  Score=51.14  Aligned_cols=75  Identities=19%  Similarity=0.251  Sum_probs=52.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc-------
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT-------  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al-------  103 (350)
                      +++.|+|| |.+|..++..|++.|.  +|++.++++++++....++.....  ....+...  +|.+    .+       
T Consensus         3 k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (235)
T 3l77_A            3 KVAVITGASRGIGEAIARALARDGY--ALALGARSVDRLEKIAHELMQEQG--VEVFYHHLDVSKAESVEEFSKKVLERF   78 (235)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHCC-HHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcC--CeEEEEEeccCCHHHHHHHHHHHHHhc
Confidence            46888998 8999999999999995  899999999888776666653321  12222211  1211    12       


Q ss_pred             CCCCEEEEecCCC
Q 018760          104 AGSDLCIVTAGAR  116 (350)
Q Consensus       104 ~~aDiVIi~~g~~  116 (350)
                      ...|++|.++|..
T Consensus        79 g~id~li~~Ag~~   91 (235)
T 3l77_A           79 GDVDVVVANAGLG   91 (235)
T ss_dssp             SSCSEEEECCCCC
T ss_pred             CCCCEEEECCccc
Confidence            2689999999864

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=96.66  E-value=0.0038  Score=56.61  Aligned_cols=110  Identities=15%  Similarity=0.204  Sum_probs=66.8

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T------  103 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l------  103 (350)
                      .++|.|+|| |.+|.+++..|+..|.  +|++.|+++++++....++.      ........  +|.+.    +      
T Consensus         5 ~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~------~~~~~~~~Dv~~~~~~~~~~~~~~~~   76 (281)
T 3m1a_A            5 AKVWLVTGASSGFGRAIAEAAVAAGD--TVIGTARRTEALDDLVAAYP------DRAEAISLDVTDGERIDVVAADVLAR   76 (281)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHCT------TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhcc------CCceEEEeeCCCHHHHHHHHHHHHHh
Confidence            457888898 9999999999999995  89999999887764322211      12222211  12211    2      


Q ss_pred             -CCCCEEEEecCCCcCc---cccH---HHHHHhhHHH----HHHHHhhhhccCCCeEEEEEcC
Q 018760          104 -AGSDLCIVTAGARQIA---GESR---LNLLQRNLSL----FKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 -~~aDiVIi~~g~~~~~---g~~r---~~~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  155 (350)
                       ...|+||.++|.....   ..+.   ...+..|+.-    .+.+.+.+.+.. .+.+|++|-
T Consensus        77 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~~sS  138 (281)
T 3m1a_A           77 YGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERG-SGSVVNISS  138 (281)
T ss_dssp             HSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEEcC
Confidence             2789999998864211   1121   2234445443    666777666644 355666654

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.66  E-value=0.03  Score=50.68  Aligned_cols=114  Identities=12%  Similarity=0.165  Sum_probs=68.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeC-------------CccchHHHHHHHHHHhhcCCCceEEEc--CCc
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDA-------------KADKLRGEMLDLQHAAAFLPRTKILAS--VDY  100 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~-------------~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~  100 (350)
                      .+++.|+|| |.+|..++..|++.|.  +|+++|+             ++++++.....+....   ........  +|.
T Consensus        15 gk~~lVTGas~gIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~   89 (280)
T 3pgx_A           15 GRVAFITGAARGQGRSHAVRLAAEGA--DIIACDICAPVSASVTYAPASPEDLDETARLVEDQG---RKALTRVLDVRDD   89 (280)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT---CCEEEEECCTTCH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhcC---CeEEEEEcCCCCH
Confidence            357888898 8999999999999995  8999998             4444544333333211   12222211  121


Q ss_pred             cc-----------cCCCCEEEEecCCCcCc---cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          101 AV-----------TAGSDLCIVTAGARQIA---GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       101 ~a-----------l~~aDiVIi~~g~~~~~---g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ++           +...|++|.++|.....   ..+.   ...+.-|    ..+.+.+.+.+.+....+.||++|-
T Consensus        90 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  165 (280)
T 3pgx_A           90 AALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSS  165 (280)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence            11           23789999998864321   1121   1223334    4456666676766555677777764

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.66  E-value=0.00072  Score=59.87  Aligned_cols=95  Identities=12%  Similarity=0.281  Sum_probs=59.8

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcC-CCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccCCCCE
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQD-FVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAGSDL  108 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~-~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~aDi  108 (350)
                      +++|.|+|| |.+|+.++..|+..| .  +|+++++++++++..    ..     ....+...  +|.    ++++++|+
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~--~V~~~~R~~~~~~~~----~~-----~~~~~~~~Dl~d~~~~~~~~~~~D~   91 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTI--KQTLFARQPAKIHKP----YP-----TNSQIIMGDVLNHAALKQAMQGQDI   91 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTE--EEEEEESSGGGSCSS----CC-----TTEEEEECCTTCHHHHHHHHTTCSE
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCc--eEEEEEcChhhhccc----cc-----CCcEEEEecCCCHHHHHHHhcCCCE
Confidence            457999998 999999999999988 4  899999998765421    10     12222221  122    35789999


Q ss_pred             EEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          109 CIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       109 VIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ||.+++...      .+      ...+.+++.+++.... .+|++|-
T Consensus        92 vv~~a~~~~------~~------~~~~~~~~~~~~~~~~-~iV~iSS  125 (236)
T 3qvo_A           92 VYANLTGED------LD------IQANSVIAAMKACDVK-RLIFVLS  125 (236)
T ss_dssp             EEEECCSTT------HH------HHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             EEEcCCCCc------hh------HHHHHHHHHHHHcCCC-EEEEEec
Confidence            999876421      11      1133455666655433 4555553

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=96.66  E-value=0.022  Score=50.91  Aligned_cols=114  Identities=18%  Similarity=0.239  Sum_probs=68.3

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT------  103 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al------  103 (350)
                      .+++.|+|| |.+|..++..|++.|.  +|+++|+++++++....++....  .........  +|.+    .+      
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (263)
T 3ai3_A            7 GKVAVITGSSSGIGLAIAEGFAKEGA--HIVLVARQVDRLHEAARSLKEKF--GVRVLEVAVDVATPEGVDAVVESVRSS   82 (263)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH--CCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            457899998 9999999999999985  89999999887765555554321  112222211  1221    12      


Q ss_pred             -CCCCEEEEecCCCcC-c--cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 -AGSDLCIVTAGARQI-A--GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 -~~aDiVIi~~g~~~~-~--g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                       ...|+||.++|.... +  ..+.   ...+.-|    ..+.+.+.+.+.+.. .+.||++|-
T Consensus        83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS  144 (263)
T 3ai3_A           83 FGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARG-GGAIIHNAS  144 (263)
T ss_dssp             HSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECc
Confidence             278999999886431 1  1121   1223333    344555555555433 456667653

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=96.66  E-value=0.021  Score=51.64  Aligned_cols=78  Identities=21%  Similarity=0.296  Sum_probs=50.5

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc-cchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc--
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA-DKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT--  103 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~-~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al--  103 (350)
                      ..+.+++.|+|| |.+|..++..|++.|.  +|++.|.+. ++++....++....   ........  +|.+    .+  
T Consensus        28 ~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~~~v~~~~~~  102 (271)
T 3v2g_A           28 SLAGKTAFVTGGSRGIGAAIAKRLALEGA--AVALTYVNAAERAQAVVSEIEQAG---GRAVAIRADNRDAEAIEQAIRE  102 (271)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC---CcEEEEECCCCCHHHHHHHHHH
Confidence            334567889998 8999999999999995  899987754 55554444554321   12222211  1211    12  


Q ss_pred             -----CCCCEEEEecCCC
Q 018760          104 -----AGSDLCIVTAGAR  116 (350)
Q Consensus       104 -----~~aDiVIi~~g~~  116 (350)
                           ...|++|.++|..
T Consensus       103 ~~~~~g~iD~lvnnAg~~  120 (271)
T 3v2g_A          103 TVEALGGLDILVNSAGIW  120 (271)
T ss_dssp             HHHHHSCCCEEEECCCCC
T ss_pred             HHHHcCCCcEEEECCCCC
Confidence                 2789999999864

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=96.65  E-value=0.014  Score=52.58  Aligned_cols=114  Identities=16%  Similarity=0.133  Sum_probs=67.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc-----
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT-----  103 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al-----  103 (350)
                      +.++|.|+|| |.+|..++..|++.|.  +|+++|+++++++.....+....   ....+...  +|.+    .+     
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~  107 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGA--DVAIWYNSHPADEKAEHLQKTYG---VHSKAYKCNISDPKSVEETISQQEK  107 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTC--EEEEEESSSCCHHHHHHHHHHHC---SCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CcceEEEeecCCHHHHHHHHHHHHH
Confidence            3457889998 8999999999999985  89999999887765444443221   12222211  1211    12     


Q ss_pred             --CCCCEEEEecCCCcC--c---cccH---HHHHHhhHHH----HHHHHhhhhccCCCeEEEEEcC
Q 018760          104 --AGSDLCIVTAGARQI--A---GESR---LNLLQRNLSL----FKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 --~~aDiVIi~~g~~~~--~---g~~r---~~~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  155 (350)
                        ...|+||.++|....  +   ..+.   ...+..|+.-    .+.+.+.+.+.. .+.+|++|-
T Consensus       108 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~isS  172 (279)
T 3ctm_A          108 DFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNG-KGSLIITSS  172 (279)
T ss_dssp             HHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             HhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEECc
Confidence              248999999885432  1   1111   1223334333    566667666544 345666653

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=96.64  E-value=0.0028  Score=58.88  Aligned_cols=69  Identities=13%  Similarity=0.082  Sum_probs=46.1

Q ss_pred             CCCCeEEEEcCChhHHH-HHHHHHhcCCCCeEE-EEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcccc-CCCCEEEE
Q 018760           35 KRHTKISVIGTGNVGMA-IAQTILTQDFVEELA-LVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVT-AGSDLCIV  111 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~-~a~~l~~~~~~~ev~-L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al-~~aDiVIi  111 (350)
                      .+++||+|||+|.+|.. ++..|...+-+ +|+ ++|+++++++..    .....    ..  .+++++++ .++|+|++
T Consensus         3 m~~~~vgiiG~G~~g~~~~~~~l~~~~~~-~lvav~d~~~~~~~~~----~~~~g----~~--~~~~~~~l~~~~D~V~i   71 (319)
T 1tlt_A            3 LKKLRIGVVGLGGIAQKAWLPVLAAASDW-TLQGAWSPTRAKALPI----CESWR----IP--YADSLSSLAASCDAVFV   71 (319)
T ss_dssp             --CEEEEEECCSTHHHHTHHHHHHSCSSE-EEEEEECSSCTTHHHH----HHHHT----CC--BCSSHHHHHTTCSEEEE
T ss_pred             CCcceEEEECCCHHHHHHHHHHHHhCCCe-EEEEEECCCHHHHHHH----HHHcC----CC--ccCcHHHhhcCCCEEEE
Confidence            35689999999999986 77777664322 555 899999887643    22211    12  24456554 68999999


Q ss_pred             ecC
Q 018760          112 TAG  114 (350)
Q Consensus       112 ~~g  114 (350)
                      +..
T Consensus        72 ~tp   74 (319)
T 1tlt_A           72 HSS   74 (319)
T ss_dssp             CSC
T ss_pred             eCC
Confidence            963

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=96.64  E-value=0.0099  Score=55.21  Aligned_cols=113  Identities=15%  Similarity=0.175  Sum_probs=69.2

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccc------hHHHHHHHHHHhhcCCCceEEEc--CCc----ccc
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADK------LRGEMLDLQHAAAFLPRTKILAS--VDY----AVT  103 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~------l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al  103 (350)
                      +|||.|+|| |.+|++++..|+..|.  +|+++|++...      .......+.....  ....+...  +|.    +++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~D~~~~~~~~~~~   77 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELTG--RSVEFEEMDILDQGALQRLF   77 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHHT--CCCEEEECCTTCHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCcccccccccHHHHHHHHhccC--CceEEEECCCCCHHHHHHHH
Confidence            368999998 9999999999999884  89999985432      2222223332111  12232221  122    234


Q ss_pred             C--CCCEEEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          104 A--GSDLCIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       104 ~--~aDiVIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +  ++|+||.+++.....  .....+.+..|+.-...+++.+.+.... .+|.+|
T Consensus        78 ~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  131 (348)
T 1ek6_A           78 KKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK-NLVFSS  131 (348)
T ss_dssp             HHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             HhcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCC-EEEEEC
Confidence            4  799999998754211  1123455667888888888887775443 345554

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=96.64  E-value=0.018  Score=52.25  Aligned_cols=115  Identities=17%  Similarity=0.193  Sum_probs=68.0

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----c-----
Q 018760           35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----V-----  102 (350)
Q Consensus        35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----a-----  102 (350)
                      .+.+++.|+|| |.+|..++..|++.|.  +|+++|+++++++....++...    ....+...  +|.+    .     
T Consensus        27 l~~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~Dv~d~~~v~~~~~~~~  100 (276)
T 2b4q_A           27 LAGRIALVTGGSRGIGQMIAQGLLEAGA--RVFICARDAEACADTATRLSAY----GDCQAIPADLSSEAGARRLAQALG  100 (276)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHTTS----SCEEECCCCTTSHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CceEEEEeeCCCHHHHHHHHHHHH
Confidence            34467899998 8999999999999985  8999999987766544444321    01111111  1211    1     


Q ss_pred             --cCCCCEEEEecCCCcCc---ccc---HHHHHHhh----HHHHHHHHhhhhccCC---CeEEEEEcC
Q 018760          103 --TAGSDLCIVTAGARQIA---GES---RLNLLQRN----LSLFKAIIPPLVKYSP---DCILLIVAN  155 (350)
Q Consensus       103 --l~~aDiVIi~~g~~~~~---g~~---r~~~~~~n----~~i~~~i~~~i~~~~p---~a~viv~tN  155 (350)
                        +...|++|.++|.....   ..+   -...+.-|    ..+.+.+.+.+.+...   .+.||++|-
T Consensus       101 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS  168 (276)
T 2b4q_A          101 ELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGS  168 (276)
T ss_dssp             HHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECC
T ss_pred             HhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECC
Confidence              23789999998864321   111   12233334    3344666666655432   166777764

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=96.64  E-value=0.0067  Score=58.85  Aligned_cols=91  Identities=14%  Similarity=0.179  Sum_probs=61.4

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      ....+|+|+|+|.+|..++..+...|.  +|+.+|+++.+....   .  ..    ..++   .+. +++++||+||.+.
T Consensus       218 L~GktV~ViG~G~IGk~vA~~Lra~Ga--~Viv~D~dp~ra~~A---~--~~----G~~v---~~Leeal~~ADIVi~at  283 (435)
T 3gvp_A          218 FGGKQVVVCGYGEVGKGCCAALKAMGS--IVYVTEIDPICALQA---C--MD----GFRL---VKLNEVIRQVDIVITCT  283 (435)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHH---H--HT----TCEE---CCHHHHTTTCSEEEECS
T ss_pred             ecCCEEEEEeeCHHHHHHHHHHHHCCC--EEEEEeCChhhhHHH---H--Hc----CCEe---ccHHHHHhcCCEEEECC
Confidence            345699999999999999999988886  899999988644211   1  11    1122   244 6799999999985


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      |.+.   .-       |.       +.+....|.+++++++.+
T Consensus       284 gt~~---lI-------~~-------e~l~~MK~gailINvgrg  309 (435)
T 3gvp_A          284 GNKN---VV-------TR-------EHLDRMKNSCIVCNMGHS  309 (435)
T ss_dssp             SCSC---SB-------CH-------HHHHHSCTTEEEEECSST
T ss_pred             CCcc---cC-------CH-------HHHHhcCCCcEEEEecCC
Confidence            5332   11       11       122333688999999865

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.62  E-value=0.0059  Score=56.42  Aligned_cols=114  Identities=11%  Similarity=0.063  Sum_probs=68.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccCC--C
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAG--S  106 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~--a  106 (350)
                      +++||.|+|| |.+|+.++..|+..|.  +|+++|++.+.....  .+..... .....+...  +|.    +.+++  .
T Consensus        13 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~--~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~   87 (335)
T 1rpn_A           13 MTRSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRW--RLRELGI-EGDIQYEDGDMADACSVQRAVIKAQP   87 (335)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCH--HHHHTTC-GGGEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             cCCeEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCCcccccc--chhhccc-cCceEEEECCCCCHHHHHHHHHHcCC
Confidence            4689999999 9999999999999884  999999977543211  1221100 011222221  122    23443  6


Q ss_pred             CEEEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          107 DLCIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       107 DiVIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |+||.+++.....  .......+..|+.-...+++.+.+......+|.+|
T Consensus        88 d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~S  137 (335)
T 1rpn_A           88 QEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQAS  137 (335)
T ss_dssp             SEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             CEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence            9999998754311  12344556677777788888887765323455554

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=96.62  E-value=0.027  Score=50.99  Aligned_cols=122  Identities=14%  Similarity=0.127  Sum_probs=68.2

Q ss_pred             CCCCCCCCCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-
Q 018760           27 HAAPPSPTKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-  102 (350)
Q Consensus        27 ~~~~~~~~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-  102 (350)
                      .++...+..+.+++.|+|| |.+|..++..|++.|.  +|++.|++ +.++....++....   ........  +|.++ 
T Consensus        21 ~~m~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~-~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v   94 (273)
T 3uf0_A           21 QSMTGPFSLAGRTAVVTGAGSGIGRAIAHGYARAGA--HVLAWGRT-DGVKEVADEIADGG---GSAEAVVADLADLEGA   94 (273)
T ss_dssp             ----CTTCCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESS-THHHHHHHHHHTTT---CEEEEEECCTTCHHHH
T ss_pred             hhcccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCH-HHHHHHHHHHHhcC---CcEEEEEecCCCHHHH
Confidence            4454444455668899998 8999999999999996  89999954 44444444444321   11222211  12111 


Q ss_pred             ---------cCCCCEEEEecCCCcC-c--cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 ---------TAGSDLCIVTAGARQI-A--GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 ---------l~~aDiVIi~~g~~~~-~--g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                               ....|++|..+|.... +  ..+.   ...+.-|    ..+.+.+.+.+.+.. .+.||++|-
T Consensus        95 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS  165 (273)
T 3uf0_A           95 ANVAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHG-SGRIVTIAS  165 (273)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HHHHHHHHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcc
Confidence                     1378999999886432 1  1121   1223334    345555666665544 456777653

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.61  E-value=0.015  Score=52.77  Aligned_cols=76  Identities=16%  Similarity=0.190  Sum_probs=52.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----------  102 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----------  102 (350)
                      +.+++.|+|| |.+|..++..|++.|.  +|++.|+++++++....++....   ........  +|.++          
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~   97 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARGI--AVYGCARDAKNVSAAVDGLRAAG---HDVDGSSCDVTSTDEVHAAVAAAVE   97 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT---CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            4457889998 8999999999999995  89999999988876665665321   12222221  12111          


Q ss_pred             -cCCCCEEEEecCCC
Q 018760          103 -TAGSDLCIVTAGAR  116 (350)
Q Consensus       103 -l~~aDiVIi~~g~~  116 (350)
                       +...|++|.++|..
T Consensus        98 ~~g~id~lv~nAg~~  112 (279)
T 3sju_A           98 RFGPIGILVNSAGRN  112 (279)
T ss_dssp             HHCSCCEEEECCCCC
T ss_pred             HcCCCcEEEECCCCC
Confidence             23679999998864

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=96.61  E-value=0.0011  Score=61.77  Aligned_cols=89  Identities=17%  Similarity=0.248  Sum_probs=59.7

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      +...++|+|||.|.||..++..+...|.  +|+.+|++.++..         .      .   ..+. +.++.||+|+++
T Consensus       141 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~---------~------~---~~~l~ell~~aDvV~l~  200 (311)
T 2cuk_A          141 DLQGLTLGLVGMGRIGQAVAKRALAFGM--RVVYHARTPKPLP---------Y------P---FLSLEELLKEADVVSLH  200 (311)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCCSSS---------S------C---BCCHHHHHHHCSEEEEC
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHCCC--EEEEECCCCcccc---------c------c---cCCHHHHHhhCCEEEEe
Confidence            4456799999999999999999988885  8999999876542         1      1   1244 568899999998


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      .....   +++        .++.  .+.+....|++++|+++.
T Consensus       201 ~p~~~---~t~--------~li~--~~~l~~mk~ga~lin~sr  230 (311)
T 2cuk_A          201 TPLTP---ETH--------RLLN--RERLFAMKRGAILLNTAR  230 (311)
T ss_dssp             CCCCT---TTT--------TCBC--HHHHTTSCTTCEEEECSC
T ss_pred             CCCCh---HHH--------hhcC--HHHHhhCCCCcEEEECCC
Confidence            64321   010        1110  012233467899988874

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=96.61  E-value=0.0039  Score=62.98  Aligned_cols=75  Identities=16%  Similarity=0.292  Sum_probs=54.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc-------------------cchHHHHHHHHHHhhcCCCceEEE
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA-------------------DKLRGEMLDLQHAAAFLPRTKILA   96 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~v~~   96 (350)
                      +..||+|||+|.+|+.++..|+..|+ ++|+|+|.+.                   .|++..+..+....   +..++..
T Consensus       325 ~~arVLIVGaGGLGs~vA~~La~aGV-G~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iN---P~V~v~~  400 (615)
T 4gsl_A          325 KNTKVLLLGAGTLGCYVSRALIAWGV-RKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIF---PLMDATG  400 (615)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHC---TTCEEEE
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhC---CCcEEEE
Confidence            45799999999999999999999997 6999999864                   34554444555443   4555554


Q ss_pred             cCC---------------------c-cccCCCCEEEEecC
Q 018760           97 SVD---------------------Y-AVTAGSDLCIVTAG  114 (350)
Q Consensus        97 t~~---------------------~-~al~~aDiVIi~~g  114 (350)
                      ...                     . +.++++|+||.+..
T Consensus       401 ~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tD  440 (615)
T 4gsl_A          401 VKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD  440 (615)
T ss_dssp             ECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCS
T ss_pred             eeccccccCccccchhhhcCCHHHHHHHhhcCCEEEecCC
Confidence            320                     1 23688999999853

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=96.61  E-value=0.0032  Score=59.60  Aligned_cols=95  Identities=18%  Similarity=0.195  Sum_probs=60.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      ....++|+|||.|.||+.+|..+...|.  +|+.+|++.++..  .    ...    ...  ...+. +.++.||+|+++
T Consensus       165 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--~----~~~----g~~--~~~~l~ell~~aDvV~l~  230 (347)
T 1mx3_A          165 RIRGETLGIIGLGRVGQAVALRAKAFGF--NVLFYDPYLSDGV--E----RAL----GLQ--RVSTLQDLLFHSDCVTLH  230 (347)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC--EEEEECTTSCTTH--H----HHH----TCE--ECSSHHHHHHHCSEEEEC
T ss_pred             CCCCCEEEEEeECHHHHHHHHHHHHCCC--EEEEECCCcchhh--H----hhc----CCe--ecCCHHHHHhcCCEEEEc
Confidence            3456799999999999999999988785  8999999765321  1    111    111  12245 568899999998


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      .....   .++        .++.  .+.+....|++++|+++.
T Consensus       231 ~P~t~---~t~--------~li~--~~~l~~mk~gailIN~ar  260 (347)
T 1mx3_A          231 CGLNE---HNH--------HLIN--DFTVKQMRQGAFLVNTAR  260 (347)
T ss_dssp             CCCCT---TCT--------TSBS--HHHHTTSCTTEEEEECSC
T ss_pred             CCCCH---HHH--------HHhH--HHHHhcCCCCCEEEECCC
Confidence            64321   111        1110  112233467899999974

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.61  E-value=0.0016  Score=59.11  Aligned_cols=97  Identities=8%  Similarity=0.147  Sum_probs=64.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhc-CCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCCEE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQ-DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSDLC  109 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~-~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aDiV  109 (350)
                      |||.|+|| |.+|+.++..|+.. +.  +|++++++++++..    +..     ...++...  +|   . ++++++|+|
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~--~V~~~~R~~~~~~~----~~~-----~~v~~~~~D~~d~~~l~~~~~~~d~v   69 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHID--HFHIGVRNVEKVPD----DWR-----GKVSVRQLDYFNQESMVEAFKGMDTV   69 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCT--TEEEEESSGGGSCG----GGB-----TTBEEEECCTTCHHHHHHHTTTCSEE
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCC--cEEEEECCHHHHHH----hhh-----CCCEEEEcCCCCHHHHHHHHhCCCEE
Confidence            68999998 99999999998886 64  89999998876542    111     12333322  12   2 358899999


Q ss_pred             EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |.+++.....        ..|....+.+++.+.+....- +|.+|
T Consensus        70 i~~a~~~~~~--------~~~~~~~~~l~~aa~~~gv~~-iv~~S  105 (289)
T 3e48_A           70 VFIPSIIHPS--------FKRIPEVENLVYAAKQSGVAH-IIFIG  105 (289)
T ss_dssp             EECCCCCCSH--------HHHHHHHHHHHHHHHHTTCCE-EEEEE
T ss_pred             EEeCCCCccc--------hhhHHHHHHHHHHHHHcCCCE-EEEEc
Confidence            9998753211        225566677777777765443 44443

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.61  E-value=0.015  Score=52.16  Aligned_cols=114  Identities=18%  Similarity=0.216  Sum_probs=68.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----------  102 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----------  102 (350)
                      +.++|.|+|| |.+|..++..|++.|.  +|+++|+++++++....++....   ....+...  ++.+.          
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~  102 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGA--RVVLTARDVEKLRAVEREIVAAG---GEAESHACDLSHSDAIAAFATGVLA  102 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhC---CceeEEEecCCCHHHHHHHHHHHHH
Confidence            3457888898 9999999999999995  89999999988876665665422   12222211  12211          


Q ss_pred             -cCCCCEEEEecCCCcC--c--cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 -TAGSDLCIVTAGARQI--A--GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 -l~~aDiVIi~~g~~~~--~--g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                       +...|+||.++|....  +  ..+.   ...+.-|    ..+.+.+.+.+.+. +.+.||++|-
T Consensus       103 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS  166 (262)
T 3rkr_A          103 AHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAA-KRGHIINISS  166 (262)
T ss_dssp             HHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCEEEEECS
T ss_pred             hcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCceEEEEec
Confidence             1358999999986221  1  1121   2223333    34455555555543 3456677654

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.60  E-value=0.036  Score=50.42  Aligned_cols=114  Identities=12%  Similarity=0.157  Sum_probs=69.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----------  102 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----------  102 (350)
                      +.+++.|+|| |.+|..++..|++.|.  +|+++|+++++++....++....   ........  +|.++          
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~  101 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGV--TVGALGRTRTEVEEVADEIVGAG---GQAIALEADVSDELQMRNAVRDLVL  101 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHTTTT---CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            3456888898 8999999999999995  89999999887776555554321   12222211  12111          


Q ss_pred             -cCCCCEEEEecCCCc--Cc--cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 -TAGSDLCIVTAGARQ--IA--GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 -l~~aDiVIi~~g~~~--~~--g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                       +...|++|.++|...  .+  ..+.   ...+..|    ..+.+.+.+.+.+.. .+.||++|-
T Consensus       102 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~Iv~isS  165 (283)
T 3v8b_A          102 KFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRG-GGAIVVVSS  165 (283)
T ss_dssp             HHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CceEEEEcC
Confidence             237899999988642  22  1222   1223334    345555666666543 466777754

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=96.60  E-value=0.005  Score=57.60  Aligned_cols=113  Identities=8%  Similarity=-0.003  Sum_probs=70.3

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccCC--CC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAG--SD  107 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~--aD  107 (350)
                      .|+|.|+|| |.+|++++..|+..|.  +|+++++++++.......+.    ......+...  ++.    +.+++  .|
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   82 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETAR----VADGMQSEIGDIRDQNKLLESIREFQPE   82 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTT----TTTTSEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC--eEEEEeCCCcccchhhHhhc----cCCceEEEEccccCHHHHHHHHHhcCCC
Confidence            479999998 9999999999999885  99999998765543222221    0112233322  122    23444  89


Q ss_pred             EEEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          108 LCIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       108 iVIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +||.+++.+...  .....+.+..|+.-...+++.+.+...-..+|.+|-
T Consensus        83 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS  132 (357)
T 1rkx_A           83 IVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITS  132 (357)
T ss_dssp             EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECC
T ss_pred             EEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecC
Confidence            999998854211  112334566677777777777776542344556653

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=96.59  E-value=0.04  Score=49.82  Aligned_cols=75  Identities=16%  Similarity=0.219  Sum_probs=51.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------  102 (350)
                      .+++.|+|| |.+|..++..|++.|.  +|+++|+++++++....++....   ........  +|.++           
T Consensus        22 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~   96 (277)
T 2rhc_B           22 SEVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG---VEADGRTCDVRSVPEIEALVAAVVER   96 (277)
T ss_dssp             SCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            357889998 9999999999999985  89999999887765555554321   12222211  12111           


Q ss_pred             cCCCCEEEEecCCC
Q 018760          103 TAGSDLCIVTAGAR  116 (350)
Q Consensus       103 l~~aDiVIi~~g~~  116 (350)
                      +...|+||.++|..
T Consensus        97 ~g~iD~lv~~Ag~~  110 (277)
T 2rhc_B           97 YGPVDVLVNNAGRP  110 (277)
T ss_dssp             TCSCSEEEECCCCC
T ss_pred             hCCCCEEEECCCCC
Confidence            23689999999864

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=96.58  E-value=0.0017  Score=59.97  Aligned_cols=68  Identities=10%  Similarity=0.106  Sum_probs=46.7

Q ss_pred             CCCeEEEEcCChhHHH-HHHHHHhcCCCCeEE-EEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccCCCCEEEEe
Q 018760           36 RHTKISVIGTGNVGMA-IAQTILTQDFVEELA-LVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTAGSDLCIVT  112 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~-~a~~l~~~~~~~ev~-L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~~aDiVIi~  112 (350)
                      +++||+|||+|.+|.. ++..|...+-+ +|+ ++|+++++++..+    ....    ...  .++++ .++++|+|+++
T Consensus         5 ~~~~igiIG~G~~g~~~~~~~l~~~~~~-~l~av~d~~~~~~~~~a----~~~~----~~~--~~~~~~ll~~~D~V~i~   73 (308)
T 3uuw_A            5 KNIKMGMIGLGSIAQKAYLPILTKSERF-EFVGAFTPNKVKREKIC----SDYR----IMP--FDSIESLAKKCDCIFLH   73 (308)
T ss_dssp             CCCEEEEECCSHHHHHHTHHHHTSCSSS-EEEEEECSCHHHHHHHH----HHHT----CCB--CSCHHHHHTTCSEEEEC
T ss_pred             ccCcEEEEecCHHHHHHHHHHHHhCCCe-EEEEEECCCHHHHHHHH----HHcC----CCC--cCCHHHHHhcCCEEEEe
Confidence            4589999999999996 77777664422 555 8999998776432    2221    111  45664 46799999999


Q ss_pred             cC
Q 018760          113 AG  114 (350)
Q Consensus       113 ~g  114 (350)
                      ..
T Consensus        74 tp   75 (308)
T 3uuw_A           74 SS   75 (308)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=96.58  E-value=0.018  Score=51.63  Aligned_cols=113  Identities=17%  Similarity=0.226  Sum_probs=67.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------  102 (350)
                      .+++.|+|| |.+|..++..|++.|.  +|+++|+++++++....++....   ....+...  +|.++           
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (262)
T 1zem_A            7 GKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG---VEARSYVCDVTSEEAVIGTVDSVVRD   81 (262)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            357899998 8999999999999995  89999999887765555554321   12222211  12211           


Q ss_pred             cCCCCEEEEecCCC-c-Cc--cccH---HHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 TAGSDLCIVTAGAR-Q-IA--GESR---LNLLQRNL----SLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 l~~aDiVIi~~g~~-~-~~--g~~r---~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +...|++|.++|.. . .+  ..+.   ...+.-|+    .+.+.+.+.+.+.. .+.||++|-
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  144 (262)
T 1zem_A           82 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQN-YGRIVNTAS  144 (262)
T ss_dssp             HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             hCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence            23789999998864 2 11  1121   12233343    34555555555433 456777653

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=96.58  E-value=0.0039  Score=55.67  Aligned_cols=113  Identities=17%  Similarity=0.189  Sum_probs=69.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc----c-------cC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA----V-------TA  104 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~----a-------l~  104 (350)
                      .+++.|+|| |.+|..++..|++.|.  +|++.|+++++++....++.....+ ...++   +|.+    .       +.
T Consensus         6 gk~vlVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~-~~~Dv---~~~~~v~~~~~~~~~~~g   79 (247)
T 3rwb_A            6 GKTALVTGAAQGIGKAIAARLAADGA--TVIVSDINAEGAKAAAASIGKKARA-IAADI---SDPGSVKALFAEIQALTG   79 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCTTEEE-CCCCT---TCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCceEE-EEcCC---CCHHHHHHHHHHHHHHCC
Confidence            457889998 8999999999999995  8999999988776544444111000 01111   1211    1       23


Q ss_pred             CCCEEEEecCCCcC-c--cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          105 GSDLCIVTAGARQI-A--GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       105 ~aDiVIi~~g~~~~-~--g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ..|++|.++|.... +  ..+.   ...+.-|    ..+.+.+.+.+.+..+.+.||+++-
T Consensus        80 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  140 (247)
T 3rwb_A           80 GIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIAS  140 (247)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECc
Confidence            78999999886432 1  1121   1223334    3455666666776665677777764

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=96.58  E-value=0.023  Score=50.70  Aligned_cols=113  Identities=18%  Similarity=0.252  Sum_probs=67.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT------  103 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al------  103 (350)
                      .++|.|+|| |.+|..++..|++.|.  +|+++|+++++++....++....   ........  +|.+    .+      
T Consensus        14 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   88 (260)
T 2zat_A           14 NKVALVTASTDGIGLAIARRLAQDGA--HVVVSSRKQENVDRTVATLQGEG---LSVTGTVCHVGKAEDRERLVAMAVNL   88 (260)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            357888898 9999999999999995  89999999887765555554321   12222211  1211    12      


Q ss_pred             -CCCCEEEEecCCCc--Cc--cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 -AGSDLCIVTAGARQ--IA--GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 -~~aDiVIi~~g~~~--~~--g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                       ...|++|..+|...  .+  ..+.   ...+..|    ..+.+.+.+.+.+.. .+.||++|-
T Consensus        89 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS  151 (260)
T 2zat_A           89 HGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRG-GGSVLIVSS  151 (260)
T ss_dssp             HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEec
Confidence             27899999988632  11  1121   2223334    334455555555433 455666653

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=96.58  E-value=0.009  Score=54.39  Aligned_cols=108  Identities=13%  Similarity=0.127  Sum_probs=68.3

Q ss_pred             eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccC-----CCCEEEE
Q 018760           39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTA-----GSDLCIV  111 (350)
Q Consensus        39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~-----~aDiVIi  111 (350)
                      ||.|+|| |.+|+.++..|+..|. .+|+++++++.....  ..+....   ....+.-.... +.++     ++|+||.
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~-~~V~~~~r~~~~~~~--~~~~~~~---~~~d~~~~~~~~~~~~~~~~~~~d~vi~   74 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKF--VNLVDLN---IADYMDKEDFLIQIMAGEEFGDVEAIFH   74 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTC-CCEEEEECCSSGGGG--HHHHTSC---CSEEEEHHHHHHHHHTTCCCSSCCEEEE
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCC-cEEEEEccCCCCchh--hhcCcce---eccccccHHHHHHHHhccccCCCcEEEE
Confidence            5899999 9999999999999872 389999987654311  1122110   11222211112 2344     4999999


Q ss_pred             ecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          112 TAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       112 ~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +++..........+.+..|+.-...+++.+.+...  .+|.+|
T Consensus        75 ~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  115 (310)
T 1eq2_A           75 EGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS  115 (310)
T ss_dssp             CCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEE
T ss_pred             CcccccCcccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence            98754332234455677788888888888887654  455554

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=96.57  E-value=0.0023  Score=60.46  Aligned_cols=70  Identities=13%  Similarity=0.240  Sum_probs=45.9

Q ss_pred             CCCCCCeEEEEcCChhHH-HHHHHHHhcCCCCeE-EEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-cC--CCC
Q 018760           33 PTKRHTKISVIGTGNVGM-AIAQTILTQDFVEEL-ALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-TA--GSD  107 (350)
Q Consensus        33 ~~~~~~KI~IIGAG~vG~-~~a~~l~~~~~~~ev-~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l~--~aD  107 (350)
                      +..+++||+|||+|.+|. .++..|...+-+ +| .++|+++++++.    +....    .....  +++++ ++  +.|
T Consensus        23 ~~m~~~rigiIG~G~~g~~~~~~~l~~~~~~-~l~av~d~~~~~~~~----~a~~~----g~~~~--~~~~~ll~~~~~D   91 (350)
T 3rc1_A           23 ANANPIRVGVIGCADIAWRRALPALEAEPLT-EVTAIASRRWDRAKR----FTERF----GGEPV--EGYPALLERDDVD   91 (350)
T ss_dssp             ---CCEEEEEESCCHHHHHTHHHHHHHCTTE-EEEEEEESSHHHHHH----HHHHH----CSEEE--ESHHHHHTCTTCS
T ss_pred             CCCCceEEEEEcCcHHHHHHHHHHHHhCCCe-EEEEEEcCCHHHHHH----HHHHc----CCCCc--CCHHHHhcCCCCC
Confidence            344568999999999998 688888776422 55 488999877663    32222    12332  46643 44  689


Q ss_pred             EEEEec
Q 018760          108 LCIVTA  113 (350)
Q Consensus       108 iVIi~~  113 (350)
                      +|+++.
T Consensus        92 ~V~i~t   97 (350)
T 3rc1_A           92 AVYVPL   97 (350)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            999985

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=96.57  E-value=0.012  Score=52.46  Aligned_cols=41  Identities=15%  Similarity=0.211  Sum_probs=34.6

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEM   79 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~   79 (350)
                      .++|.|+|| |.+|..++..|++.|.  +|+++|+++++++...
T Consensus         7 ~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~   48 (264)
T 2pd6_A            7 SALALVTGAGSGIGRAVSVRLAGEGA--TVAACDLDRAAAQETV   48 (264)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHH
Confidence            357999998 9999999999999985  8999999987665433

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=96.57  E-value=0.0085  Score=52.88  Aligned_cols=113  Identities=13%  Similarity=0.162  Sum_probs=67.1

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT------  103 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al------  103 (350)
                      .++|.|+|| |.+|..++..|++.|.  +|+++|+++++++....++.....  ....+...  +|.+    .+      
T Consensus         7 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (248)
T 2pnf_A            7 GKVSLVTGSTRGIGRAIAEKLASAGS--TVIITGTSGERAKAVAEEIANKYG--VKAHGVEMNLLSEESINKAFEEIYNL   82 (248)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence            457889998 9999999999999985  899999998777655545543211  12222211  1221    12      


Q ss_pred             -CCCCEEEEecCCCcCc---ccc---HHHHHHhhHHHH----HHHHhhhhccCCCeEEEEEc
Q 018760          104 -AGSDLCIVTAGARQIA---GES---RLNLLQRNLSLF----KAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       104 -~~aDiVIi~~g~~~~~---g~~---r~~~~~~n~~i~----~~i~~~i~~~~p~a~viv~t  154 (350)
                       .+.|+||.++|.....   ..+   -...+..|+.-.    +.+.+.+.+.. .+.+|++|
T Consensus        83 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~s  143 (248)
T 2pnf_A           83 VDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQR-WGRIVNIS  143 (248)
T ss_dssp             SSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHT-CEEEEEEC
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEEc
Confidence             2799999998864321   112   123344444333    45555554433 35566665

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=96.57  E-value=0.01  Score=53.13  Aligned_cols=113  Identities=11%  Similarity=0.100  Sum_probs=63.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc-----
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT-----  103 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al-----  103 (350)
                      +.+++.|+|| |.+|.+++..|++.|.  +|+++|+++++++....++..      .......  +|.+    .+     
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~------~~~~~~~Dv~~~~~v~~~~~~~~~   77 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGA--TVLGLDLKPPAGEEPAAELGA------AVRFRNADVTNEADATAALAFAKQ   77 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSCC------------------CEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCC------ceEEEEccCCCHHHHHHHHHHHHH
Confidence            3457888998 8999999999999995  899999998877654444421      1122211  1211    12     


Q ss_pred             --CCCCEEEEecCCCcCc-------cccH---HHHHHhh----HHHHHHHHhhhhcc-----CCCeEEEEEcCC
Q 018760          104 --AGSDLCIVTAGARQIA-------GESR---LNLLQRN----LSLFKAIIPPLVKY-----SPDCILLIVANP  156 (350)
Q Consensus       104 --~~aDiVIi~~g~~~~~-------g~~r---~~~~~~n----~~i~~~i~~~i~~~-----~p~a~viv~tNP  156 (350)
                        ...|++|.++|.....       ..+.   ...+.-|    ..+.+.+.+.+.+.     ...+.||++|-.
T Consensus        78 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~  151 (257)
T 3tpc_A           78 EFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASI  151 (257)
T ss_dssp             HHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCT
T ss_pred             HcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEech
Confidence              2789999998864221       1111   1223334    34555666666653     245667777643

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.57  E-value=0.026  Score=50.47  Aligned_cols=114  Identities=17%  Similarity=0.158  Sum_probs=70.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c-----
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T-----  103 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l-----  103 (350)
                      +.+++.|+|| |.+|..++..|++.|.  +|++.|+++++++....++....   ........  +|.++    +     
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~   85 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA--SVVVTDLKSEGAEAVAAAIRQAG---GKAIGLECNVTDEQHREAVIKAALD   85 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            4457888898 8999999999999995  89999999988776666665422   12222211  12111    2     


Q ss_pred             --CCCCEEEEecCCCcCc--cccHH---HHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 --AGSDLCIVTAGARQIA--GESRL---NLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 --~~aDiVIi~~g~~~~~--g~~r~---~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                        ...|++|.++|.....  ..+..   ..+.-|    ..+.+.+.+.+.+. ..+.||++|-
T Consensus        86 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS  147 (256)
T 3gaf_A           86 QFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKA-GGGAILNISS  147 (256)
T ss_dssp             HHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcC
Confidence              3789999998864321  12221   223333    34555556656553 3566777764

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=96.56  E-value=0.029  Score=50.44  Aligned_cols=115  Identities=12%  Similarity=0.225  Sum_probs=70.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc----------cccC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY----------AVTA  104 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~----------~al~  104 (350)
                      +.+++.|+|| |.+|.+++..|++.|.  +|++.|+++++++....++..... ....... ..|.          +.+.
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~-~~D~~~~~~~~~~~~~~g   84 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGA--NVLINGRREENVNETIKEIRAQYP-DAILQPV-VADLGTEQGCQDVIEKYP   84 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHCT-TCEEEEE-ECCTTSHHHHHHHHHHCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhCC-CceEEEE-ecCCCCHHHHHHHHHhcC
Confidence            3457888898 8999999999999995  899999999888766666654321 0111111 1121          1234


Q ss_pred             CCCEEEEecCCCcCc---cccHH---HHHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760          105 GSDLCIVTAGARQIA---GESRL---NLLQRNL----SLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       105 ~aDiVIi~~g~~~~~---g~~r~---~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ..|++|.++|.....   ..+..   ..+.-|+    .+.+.+.+.+.+. ..+.||+++-
T Consensus        85 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS  144 (267)
T 3t4x_A           85 KVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIER-KEGRVIFIAS  144 (267)
T ss_dssp             CCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TEEEEEEECC
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCEEEEEcc
Confidence            789999998864321   11222   2234443    3456666666553 3466777754

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=96.56  E-value=0.0029  Score=59.51  Aligned_cols=93  Identities=18%  Similarity=0.217  Sum_probs=60.8

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      ...++|+|||.|.+|..+|..+...|.  +|+.+|+++.+.+.    ... .    .  +... +. +.++.||+|+++.
T Consensus       143 l~g~tvGIIG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~----~~~-~----g--~~~~-~l~ell~~aDvV~l~~  208 (330)
T 4e5n_A          143 LDNATVGFLGMGAIGLAMADRLQGWGA--TLQYHEAKALDTQT----EQR-L----G--LRQV-ACSELFASSDFILLAL  208 (330)
T ss_dssp             STTCEEEEECCSHHHHHHHHHTTTSCC--EEEEECSSCCCHHH----HHH-H----T--EEEC-CHHHHHHHCSEEEECC
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCC--EEEEECCCCCcHhH----HHh-c----C--ceeC-CHHHHHhhCCEEEEcC
Confidence            456799999999999999999887775  89999998744331    111 1    1  1222 45 5688999999996


Q ss_pred             CCCc-CccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          114 GARQ-IAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       114 g~~~-~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      .... ..+.     +  |       .+.+....|++++|+++.
T Consensus       209 P~t~~t~~l-----i--~-------~~~l~~mk~gailIN~ar  237 (330)
T 4e5n_A          209 PLNADTLHL-----V--N-------AELLALVRPGALLVNPCR  237 (330)
T ss_dssp             CCSTTTTTC-----B--C-------HHHHTTSCTTEEEEECSC
T ss_pred             CCCHHHHHH-----h--C-------HHHHhhCCCCcEEEECCC
Confidence            4321 1111     0  1       122344468999999974

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=96.54  E-value=0.019  Score=51.35  Aligned_cols=112  Identities=16%  Similarity=0.138  Sum_probs=65.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----ccC----
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VTA----  104 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al~----  104 (350)
                      +.+++.|+|| |.+|..++..|++.|.  +|+++|+++++++....++..      .......  +|.+    .++    
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~------~~~~~~~D~~d~~~v~~~~~~~~~   82 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGA--TVAIADLDVMAAQAVVAGLEN------GGFAVEVDVTKRASVDAAMQKAID   82 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCTT------CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc------CCeEEEEeCCCHHHHHHHHHHHHH
Confidence            3468999998 8999999999999995  899999998766533222211      1122211  1221    122    


Q ss_pred             ---CCCEEEEecCCCcC-c--cccH---HHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760          105 ---GSDLCIVTAGARQI-A--GESR---LNLLQRNL----SLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       105 ---~aDiVIi~~g~~~~-~--g~~r---~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                         ..|+||.++|.... +  ..+.   ...+.-|+    .+.+...+.+.+....+.+|+++-
T Consensus        83 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS  146 (263)
T 3ak4_A           83 ALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTAS  146 (263)
T ss_dssp             HHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence               78999999886431 1  1121   22233343    344555555554442456666653

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=96.54  E-value=0.045  Score=49.38  Aligned_cols=114  Identities=15%  Similarity=0.181  Sum_probs=68.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeC-------------CccchHHHHHHHHHHhhcCCCceEEEc--CCc
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDA-------------KADKLRGEMLDLQHAAAFLPRTKILAS--VDY  100 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~-------------~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~  100 (350)
                      .+++.|+|+ |.+|..++..|++.|.  +|+++|+             ++++++.....+....   ........  +|.
T Consensus        11 ~k~~lVTGas~GIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~   85 (277)
T 3tsc_A           11 GRVAFITGAARGQGRAHAVRMAAEGA--DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN---RRIVAAVVDTRDF   85 (277)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT---CCEEEEECCTTCH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhcC---CeEEEEECCCCCH
Confidence            357888898 8999999999999996  8999998             3444443333333211   12222211  121


Q ss_pred             cc-----------cCCCCEEEEecCCCcCc---cccHH---HHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          101 AV-----------TAGSDLCIVTAGARQIA---GESRL---NLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       101 ~a-----------l~~aDiVIi~~g~~~~~---g~~r~---~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +.           +...|++|.++|.....   ..+..   ..+.-|    ..+.+.+.+.+.+..+.+.||++|-
T Consensus        86 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS  161 (277)
T 3tsc_A           86 DRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISS  161 (277)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence            11           23689999999864321   12221   223333    4466667777776665677888764

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=96.54  E-value=0.016  Score=52.70  Aligned_cols=114  Identities=11%  Similarity=0.123  Sum_probs=67.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------  102 (350)
                      .++|.|+|| |.+|..++..|++.|.  +|+++++++++++....++....   ....+...  +|.++           
T Consensus        44 ~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~d~~~v~~~~~~~~~~  118 (285)
T 2c07_A           44 NKVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFG---YESSGYAGDVSKKEEISEVINKILTE  118 (285)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTT---CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcC---CceeEEECCCCCHHHHHHHHHHHHHh
Confidence            467999998 9999999999999885  89999998877765544554321   12222211  12211           


Q ss_pred             cCCCCEEEEecCCCcCc---ccc---HHHHHHhhHH----HHHHHHhhhhccCCCeEEEEEcCC
Q 018760          103 TAGSDLCIVTAGARQIA---GES---RLNLLQRNLS----LFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~~---g~~---r~~~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      +...|+||.++|.....   ..+   -...+..|+.    +.+.+.+.+.+.. .+.+|++|-.
T Consensus       119 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS~  181 (285)
T 2c07_A          119 HKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINISSI  181 (285)
T ss_dssp             CSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECCT
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECCh
Confidence            24689999998864321   111   1223333433    3455555554433 3566777643

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.53  E-value=0.054  Score=49.54  Aligned_cols=114  Identities=15%  Similarity=0.114  Sum_probs=64.2

Q ss_pred             CCCeEEEEcC-C--hhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c---
Q 018760           36 RHTKISVIGT-G--NVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T---  103 (350)
Q Consensus        36 ~~~KI~IIGA-G--~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l---  103 (350)
                      +.+++.|+|| |  .+|..++..|++.|.  +|++.|++++..+. ..++.....   .......  +|.++    +   
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~-~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~  102 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA--EVALTYLSETFKKR-VDPLAESLG---VKLTVPCDVSDAESVDNMFKVL  102 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHH-HHHHHHHHT---CCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCC--EEEEEeCChHHHHH-HHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHH
Confidence            3457889998 4  899999999999995  89999999765443 223322221   1122211  12111    1   


Q ss_pred             ----CCCCEEEEecCCCcC-----c--cccH---HHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcC
Q 018760          104 ----AGSDLCIVTAGARQI-----A--GESR---LNLLQRNLSLFKAIIPPLVKY-SPDCILLIVAN  155 (350)
Q Consensus       104 ----~~aDiVIi~~g~~~~-----~--g~~r---~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN  155 (350)
                          ...|++|.++|....     +  ..+.   ...+.-|+.-...+.+.+..+ ...+.||++|-
T Consensus       103 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS  169 (296)
T 3k31_A          103 AEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY  169 (296)
T ss_dssp             HHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             HHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence                367999999986531     1  1222   223444544333333333332 22567777764

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=96.53  E-value=0.017  Score=50.96  Aligned_cols=113  Identities=19%  Similarity=0.235  Sum_probs=65.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc-------
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT-------  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al-------  103 (350)
                      +++.|+|| |.+|..++..|++.|.  +|+++|+++++++....++.....  ....+...  +|.+    .+       
T Consensus         3 k~vlItGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (250)
T 2cfc_A            3 RVAIVTGASSGNGLAIATRFLARGD--RVAALDLSAETLEETARTHWHAYA--DKVLRVRADVADEGDVNAAIAATMEQF   78 (250)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHSTTTG--GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence            47899998 9999999999999985  899999998776644444411110  11222211  1221    12       


Q ss_pred             CCCCEEEEecCCCcCcc------ccH---HHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 AGSDLCIVTAGARQIAG------ESR---LNLLQRNL----SLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~g------~~r---~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      .+.|+||.++|......      .+.   ...+.-|.    .+.+.+.+.+.+.. .+.+|++|-
T Consensus        79 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS  142 (250)
T 2cfc_A           79 GAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQG-AGVIVNIAS  142 (250)
T ss_dssp             SCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECC
Confidence            27899999988642111      111   22233343    34455555555543 355666653

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=96.53  E-value=0.015  Score=51.61  Aligned_cols=113  Identities=15%  Similarity=0.158  Sum_probs=67.9

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeC-CccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c-----
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDA-KADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T-----  103 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~-~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l-----  103 (350)
                      .+++.|+|| |.+|..++..|++.|.  +|++.++ ++++++....++....   ........  +|.++    +     
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~   78 (246)
T 2uvd_A            4 GKVALVTGASRGIGRAIAIDLAKQGA--NVVVNYAGNEQKANEVVDEIKKLG---SDAIAVRADVANAEDVTNMVKQTVD   78 (246)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC---CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            357888898 9999999999999985  8999999 7776665554554321   12222211  12221    2     


Q ss_pred             --CCCCEEEEecCCCcCc---cccH---HHHHHhhHH----HHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 --AGSDLCIVTAGARQIA---GESR---LNLLQRNLS----LFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 --~~aDiVIi~~g~~~~~---g~~r---~~~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                        ...|++|.++|.....   ..+.   ...+.-|..    +.+.+.+.+.+.. .+.||++|-
T Consensus        79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  141 (246)
T 2uvd_A           79 VFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR-HGRIVNIAS  141 (246)
T ss_dssp             HHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECC
Confidence              2789999999865321   1121   223333433    3556666665543 356777664

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=96.53  E-value=0.033  Score=50.22  Aligned_cols=115  Identities=11%  Similarity=0.080  Sum_probs=69.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----------  102 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----------  102 (350)
                      +.+++.|+|| |.+|..++..|++.|.  +|+++|+++++++....++....   ........  +|.++          
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~   94 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKG---LNVEGSVCDLLSRTERDKLMQTVAH   94 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CceEEEECCCCCHHHHHHHHHHHHH
Confidence            4467899998 9999999999999995  89999999887765555554321   12222211  12111          


Q ss_pred             -c-CCCCEEEEecCCCcC-c--cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          103 -T-AGSDLCIVTAGARQI-A--GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       103 -l-~~aDiVIi~~g~~~~-~--g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                       + ...|++|.++|.... +  ..+.   ...+.-|    ..+.+.+.+.+.+.. .+.||++|..
T Consensus        95 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~  159 (273)
T 1ae1_A           95 VFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ-NGNVIFLSSI  159 (273)
T ss_dssp             HTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SEEEEEECCG
T ss_pred             HcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcCH
Confidence             1 578999999986432 1  1121   1223334    334555555555433 4567777643

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=96.53  E-value=0.0083  Score=54.28  Aligned_cols=116  Identities=15%  Similarity=0.145  Sum_probs=72.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh--cCCCceEEEcCC--------ccccCCC
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA--FLPRTKILASVD--------YAVTAGS  106 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~--~~~~~~v~~t~~--------~~al~~a  106 (350)
                      +.+.|.|| +.+|.+++..|++.|.  +|++.|+++++++..+.++.....  .....++.-..+        .+.+..-
T Consensus        10 KvalVTGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i   87 (255)
T 4g81_D           10 KTALVTGSARGLGFAYAEGLAAAGA--RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHV   87 (255)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCC
Confidence            35556688 8999999999999995  999999999988877767765321  000111110000        1224568


Q ss_pred             CEEEEecCCCcC-c--cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          107 DLCIVTAGARQI-A--GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       107 DiVIi~~g~~~~-~--g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      |++|..+|.... +  ..+..+   .+.-|    .-..+..++.|.+....+.||+++-
T Consensus        88 DiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS  146 (255)
T 4g81_D           88 DILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGS  146 (255)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEee
Confidence            999999886432 2  122222   22223    4466778888876566677888863

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=96.52  E-value=0.0026  Score=62.61  Aligned_cols=69  Identities=30%  Similarity=0.356  Sum_probs=44.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHhc------CCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEE
Q 018760           38 TKISVIGTGNVGMAIAQTILTQ------DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIV  111 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~------~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi  111 (350)
                      +||+|||.|+||.+++..|...      |+  +|++.+...++....    .....+....... .+..+++++||+||+
T Consensus        55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G~--~ViVg~r~~sks~e~----A~e~G~~v~d~ta-~s~aEAa~~ADVVIL  127 (525)
T 3fr7_A           55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKIGLRKGSKSFDE----ARAAGFTEESGTL-GDIWETVSGSDLVLL  127 (525)
T ss_dssp             SEEEEECCTTHHHHHHHHHHHHHHHTTCCC--EEEEEECTTCSCHHH----HHHTTCCTTTTCE-EEHHHHHHHCSEEEE
T ss_pred             CEEEEEeEhHHHHHHHHHHHhcccccCCCC--EEEEEeCCchhhHHH----HHHCCCEEecCCC-CCHHHHHhcCCEEEE
Confidence            6999999999999999999988      76  777666654433221    1111111000001 112367999999999


Q ss_pred             ec
Q 018760          112 TA  113 (350)
Q Consensus       112 ~~  113 (350)
                      +.
T Consensus       128 aV  129 (525)
T 3fr7_A          128 LI  129 (525)
T ss_dssp             CS
T ss_pred             CC
Confidence            96

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=96.52  E-value=0.0051  Score=55.17  Aligned_cols=115  Identities=12%  Similarity=0.117  Sum_probs=68.6

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----ccC-----
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VTA-----  104 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al~-----  104 (350)
                      .++|.|+|| |.+|..++..|++.|.  +|+++|+++++++....++..... .....+...  +|.+    .++     
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (260)
T 2z1n_A            7 GKLAVVTAGSSGLGFASALELARNGA--RLLLFSRNREKLEAAASRIASLVS-GAQVDIVAGDIREPGDIDRLFEKARDL   83 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHST-TCCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC-CCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence            457899998 9999999999999985  899999998877765555543200 002222211  1221    122     


Q ss_pred             -CCCEEEEecCCCcCc---cccH---HHHHHhhHH----HHHHHHhhhhccCCCeEEEEEcC
Q 018760          105 -GSDLCIVTAGARQIA---GESR---LNLLQRNLS----LFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       105 -~aDiVIi~~g~~~~~---g~~r---~~~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                       +.|+||.++|.....   ..+.   ...+.-|+.    ..+.+.+.+.+.. .+.+|++|-
T Consensus        84 ~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  144 (260)
T 2z1n_A           84 GGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKG-WGRMVYIGS  144 (260)
T ss_dssp             TCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECc
Confidence             489999998864321   1121   223334433    3456666665543 355667653

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=96.52  E-value=0.032  Score=49.78  Aligned_cols=115  Identities=14%  Similarity=0.064  Sum_probs=66.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c-----
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T-----  103 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l-----  103 (350)
                      +.++|.|+|| |.+|..++..|++.|.  +|+++|+++++++....++....   ....+...  ++.++    +     
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~   87 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKG---FQVTGSVCDASLRPEREKLMQTVSS   87 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CeeEEEECCCCCHHHHHHHHHHHHH
Confidence            4468899998 9999999999999985  89999999877765554554321   12222221  12111    1     


Q ss_pred             ---CCCCEEEEecCCCcCc---cccH---HHHHHhhHH----HHHHHHhhhhccCCCeEEEEEcCC
Q 018760          104 ---AGSDLCIVTAGARQIA---GESR---LNLLQRNLS----LFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       104 ---~~aDiVIi~~g~~~~~---g~~r---~~~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                         ...|+||.++|.....   ..+.   ...+..|+.    +.+.+.+.+.+.. .+.+|++|..
T Consensus        88 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~isS~  152 (266)
T 1xq1_A           88 MFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSSI  152 (266)
T ss_dssp             HHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC--
T ss_pred             HhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEccc
Confidence               5789999998864211   1111   223344443    4444444444443 3456666543

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=96.51  E-value=0.02  Score=51.05  Aligned_cols=109  Identities=16%  Similarity=0.133  Sum_probs=66.6

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------  102 (350)
                      .+++.|+|| |.+|..++..|++.|.  +|++.|+++++++....++.      ........  +|.++           
T Consensus         6 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~------~~~~~~~~D~~~~~~v~~~~~~~~~~   77 (253)
T 1hxh_A            6 GKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELG------ERSMFVRHDVSSEADWTLVMAAVQRR   77 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHC------TTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC------CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            357888898 9999999999999985  89999999877664433331      11122111  12111           


Q ss_pred             cCCCCEEEEecCCCcCc---cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 TAGSDLCIVTAGARQIA---GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~~---g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +...|++|.++|.....   ..+.   ...+.-|    ....+.+.+.+.+..  +.+|++|-
T Consensus        78 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--g~iv~isS  138 (253)
T 1hxh_A           78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG--GSIINMAS  138 (253)
T ss_dssp             HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC--EEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC--CEEEEEcc
Confidence            22469999999864321   1122   2233444    335566677776544  66777764

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=96.51  E-value=0.00092  Score=62.13  Aligned_cols=69  Identities=19%  Similarity=0.282  Sum_probs=46.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccC--CCCEEE
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTA--GSDLCI  110 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~--~aDiVI  110 (350)
                      ..+++||+|||+|.+|..++..|...+-+.-+.++|+++++++..    .      ..  +...++++ .++  ++|+|+
T Consensus         7 ~~~~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~----~------~~--~~~~~~~~~~l~~~~~D~V~   74 (315)
T 3c1a_A            7 NNSPVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALV----P------PG--CVIESDWRSVVSAPEVEAVI   74 (315)
T ss_dssp             --CCEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTC----C------TT--CEEESSTHHHHTCTTCCEEE
T ss_pred             CCCcceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHH----H------hh--CcccCCHHHHhhCCCCCEEE
Confidence            345689999999999999998888764333356899998765421    1      11  22345664 454  799999


Q ss_pred             EecC
Q 018760          111 VTAG  114 (350)
Q Consensus       111 i~~g  114 (350)
                      ++..
T Consensus        75 i~tp   78 (315)
T 3c1a_A           75 IATP   78 (315)
T ss_dssp             EESC
T ss_pred             EeCC
Confidence            9953

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.50  E-value=0.014  Score=51.34  Aligned_cols=107  Identities=12%  Similarity=0.027  Sum_probs=66.3

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCCEE
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSDLC  109 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aDiV  109 (350)
                      +++|.|+|| |.+|+.++..|++.+...+|+++++++++++.    +.      ....+...  +|   . +.++++|+|
T Consensus         4 ~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~----~~------~~~~~~~~D~~d~~~~~~~~~~~d~v   73 (253)
T 1xq6_A            4 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEK----IG------GEADVFIGDITDADSINPAFQGIDAL   73 (253)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHH----TT------CCTTEEECCTTSHHHHHHHHTTCSEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhh----cC------CCeeEEEecCCCHHHHHHHHcCCCEE
Confidence            468999998 99999999999998322499999998765431    21      11222211  12   2 347889999


Q ss_pred             EEecCCCcC------------cccc---HHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          110 IVTAGARQI------------AGES---RLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       110 Ii~~g~~~~------------~g~~---r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |.+++....            +...   -......|......+++.+.+..... +|++|
T Consensus        74 i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-iv~~S  132 (253)
T 1xq6_A           74 VILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKH-IVVVG  132 (253)
T ss_dssp             EECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSE-EEEEE
T ss_pred             EEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCE-EEEEc
Confidence            999875321            1110   01234457667777777777665433 45554

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=96.50  E-value=0.011  Score=56.23  Aligned_cols=120  Identities=15%  Similarity=0.250  Sum_probs=68.6

Q ss_pred             CCCCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH----------------HHHHHHHHHhhcCCCceE
Q 018760           32 SPTKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR----------------GEMLDLQHAAAFLPRTKI   94 (350)
Q Consensus        32 ~~~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~----------------~~~~dl~~~~~~~~~~~v   94 (350)
                      -+.+++++|.|+|| |.+|++++..|+..|.  +|+++|++.....                .....+....  .....+
T Consensus         6 ~~~~~~~~vlVTG~tGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~v~~   81 (404)
T 1i24_A            6 HHHHHGSRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT--GKSIEL   81 (404)
T ss_dssp             ------CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH--CCCCEE
T ss_pred             ccccCCCeEEEeCCCcHHHHHHHHHHHhCCC--eEEEEEecCccccccccccccccccchhhhhhhhHhhcc--CCceEE
Confidence            34567789999998 9999999999999885  9999998643211                0111111111  112333


Q ss_pred             EEc--CCc----cccCC--CCEEEEecCCCcCc--cccH---HHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760           95 LAS--VDY----AVTAG--SDLCIVTAGARQIA--GESR---LNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus        95 ~~t--~~~----~al~~--aDiVIi~~g~~~~~--g~~r---~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ...  +|.    +++++  +|+||.+++....+  ..+.   ...+..|+.-...+++.+.+......+|.+|-
T Consensus        82 ~~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS  155 (404)
T 1i24_A           82 YVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGT  155 (404)
T ss_dssp             EESCTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             EECCCCCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence            322  122    23555  99999998754211  1111   22456688888888888877654334566653

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=96.49  E-value=0.0088  Score=53.63  Aligned_cols=109  Identities=17%  Similarity=0.227  Sum_probs=65.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------  102 (350)
                      .+++.|+|| |.+|..++..|++.|.  +|++.|+++++++....++..      .......  +|.+.           
T Consensus         8 gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~------~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (255)
T 4eso_A            8 GKKAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNESNIARIREEFGP------RVHALRSDIADLNEIAVLGAAAGQT   79 (255)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG------GEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC------cceEEEccCCCHHHHHHHHHHHHHH
Confidence            457889998 8999999999999995  899999998877654444321      1112111  12211           


Q ss_pred             cCCCCEEEEecCCCcCc---cccH---HHHHHhhHH----HHHHHHhhhhccCCCeEEEEEcCC
Q 018760          103 TAGSDLCIVTAGARQIA---GESR---LNLLQRNLS----LFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~~---g~~r---~~~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      +...|++|.++|.....   ..+.   ...+.-|+.    +.+.+.+.+++   .+.||++|-.
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~---~g~iv~isS~  140 (255)
T 4eso_A           80 LGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIRE---GGSIVFTSSV  140 (255)
T ss_dssp             HSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE---EEEEEEECCG
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhc---CCEEEEECCh
Confidence            23789999998865321   1122   223444543    33444444433   4667777643

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=96.48  E-value=0.032  Score=49.80  Aligned_cols=113  Identities=17%  Similarity=0.218  Sum_probs=66.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccc--hHHHHHHHHHHhhcCCCceEEEc--CCccc----c-----
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADK--LRGEMLDLQHAAAFLPRTKILAS--VDYAV----T-----  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~--l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l-----  103 (350)
                      +++.|+|| |.+|..++..|++.|.  +|++.|+++++  ++....++....   ........  +|.++    +     
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~   77 (258)
T 3a28_C            3 KVAMVTGGAQGIGRGISEKLAADGF--DIAVADLPQQEEQAAETIKLIEAAD---QKAVFVGLDVTDKANFDSAIDEAAE   77 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEECGGGHHHHHHHHHHHHTTT---CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            47889998 8999999999999985  89999998876  554444443211   12222211  12211    2     


Q ss_pred             --CCCCEEEEecCCCcC-c--cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 --AGSDLCIVTAGARQI-A--GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 --~~aDiVIi~~g~~~~-~--g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                        ...|++|..+|.... +  ..+.   ...+..|    ..+.+.+.+.|.+....+.||++|-
T Consensus        78 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  141 (258)
T 3a28_C           78 KLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAAS  141 (258)
T ss_dssp             HHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred             HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECc
Confidence              278999999886432 1  1121   2223334    3355556666655443256667654

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=96.48  E-value=0.017  Score=52.28  Aligned_cols=112  Identities=14%  Similarity=0.203  Sum_probs=69.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------c
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------T  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------l  103 (350)
                      +++.|+|| |.+|..++..|++.|.  +|++.|+++++++....++.....   .......  +|.++           +
T Consensus         5 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~~   79 (264)
T 3tfo_A            5 KVILITGASGGIGEGIARELGVAGA--KILLGARRQARIEAIATEIRDAGG---TALAQVLDVTDRHSVAAFAQAAVDTW   79 (264)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTTC---EEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC---cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46888898 8999999999999995  899999999888766666654321   1122111  12111           2


Q ss_pred             CCCCEEEEecCCCcCc---cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 AGSDLCIVTAGARQIA---GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~---g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ...|++|.++|.....   ..+.   ...+.-|    ..+.+.+.+.+.+.. .+.||++|-
T Consensus        80 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS  140 (264)
T 3tfo_A           80 GRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQR-SGQIINIGS  140 (264)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CeEEEEEcC
Confidence            3789999999864321   1121   1223333    344556666665543 466777753

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=96.48  E-value=0.046  Score=49.23  Aligned_cols=110  Identities=13%  Similarity=0.167  Sum_probs=67.3

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT------  103 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al------  103 (350)
                      .+++.|+|+ |.+|.+++..|++.|.  +|++.|+++++++....++..      .......  +|.+    .+      
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~------~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (271)
T 3tzq_B           11 NKVAIITGACGGIGLETSRVLARAGA--RVVLADLPETDLAGAAASVGR------GAVHHVVDLTNEVSVRALIDFTIDT   82 (271)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSCHHHHHHHHCT------TCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCC------CeEEEECCCCCHHHHHHHHHHHHHH
Confidence            457888898 8999999999999995  899999999888755444411      1122211  1211    12      


Q ss_pred             -CCCCEEEEecCCCcC-c----cccH---HHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 -AGSDLCIVTAGARQI-A----GESR---LNLLQRNL----SLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 -~~aDiVIi~~g~~~~-~----g~~r---~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                       ...|++|..+|.... .    ..+.   ...+.-|+    .+.+.+.+.|.+. ..+.||++|-
T Consensus        83 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS  146 (271)
T 3tzq_B           83 FGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISA-GGGAIVNISS  146 (271)
T ss_dssp             HSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEECC
Confidence             378999999886521 1    1121   22334443    3455555555553 3566777754

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=96.48  E-value=0.011  Score=52.64  Aligned_cols=111  Identities=18%  Similarity=0.197  Sum_probs=67.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc-----
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT-----  103 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al-----  103 (350)
                      +.+++.|+|+ |.+|..++..|++.|.  +|++.|+++++++.....+....      .....  +|.+    .+     
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~------~~~~~Dv~d~~~v~~~~~~~~~   79 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGA--KVIGTATSESGAQAISDYLGDNG------KGMALNVTNPESIEAVLKAITD   79 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGGE------EEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcccc------eEEEEeCCCHHHHHHHHHHHHH
Confidence            4457888898 8999999999999995  89999999887765444443211      11111  1211    12     


Q ss_pred             --CCCCEEEEecCCCcCc---cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 --AGSDLCIVTAGARQIA---GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 --~~aDiVIi~~g~~~~~---g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                        ...|++|..+|.....   ..+.   ...+.-|    ..+.+.+.+.+.+.. .+.||++|-
T Consensus        80 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~iv~isS  142 (248)
T 3op4_A           80 EFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKR-QGRIINVGS  142 (248)
T ss_dssp             HHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcc
Confidence              3789999999865321   1121   1223334    345555566565543 456777653

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=96.47  E-value=0.033  Score=50.79  Aligned_cols=45  Identities=18%  Similarity=0.217  Sum_probs=37.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEe-CCccchHHHHHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVD-AKADKLRGEMLDLQ   83 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D-~~~~~l~~~~~dl~   83 (350)
                      .+++.|+|+ |.+|..++..|++.|.  +|+++| +++++++....++.
T Consensus         9 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~r~~~~~~~~~~~l~   55 (291)
T 1e7w_A            9 VPVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSAAEANALSATLN   55 (291)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEcCCCHHHHHHHHHHHh
Confidence            346778898 8999999999999995  899999 99887776555554

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=96.47  E-value=0.0012  Score=61.39  Aligned_cols=108  Identities=17%  Similarity=0.188  Sum_probs=66.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccCC--C
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAG--S  106 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~--a  106 (350)
                      ++|||.|+|| |.+|+.++..|+..|.  +|+++|++.......   +...    ....+...  +|.    +++++  +
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~---l~~~----~~~~~~~~Dl~d~~~~~~~~~~~~~   90 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGD--KVVGIDNFATGRREH---LKDH----PNLTFVEGSIADHALVNQLIGDLQP   90 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCGGG---SCCC----TTEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCCccchhh---Hhhc----CCceEEEEeCCCHHHHHHHHhccCC
Confidence            4579999998 9999999999999884  999999975432110   1100    12222221  122    23556  9


Q ss_pred             CEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          107 DLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       107 DiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |+||.+++..........+ +..|+.-...+++.+.+.... .+|++|
T Consensus        91 D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~~-~iV~~S  136 (333)
T 2q1w_A           91 DAVVHTAASYKDPDDWYND-TLTNCVGGSNVVQAAKKNNVG-RFVYFQ  136 (333)
T ss_dssp             SEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             cEEEECceecCCCccCChH-HHHHHHHHHHHHHHHHHhCCC-EEEEEC
Confidence            9999998764322112222 566777777777777765433 355554

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=96.47  E-value=0.03  Score=52.15  Aligned_cols=45  Identities=18%  Similarity=0.217  Sum_probs=36.9

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEe-CCccchHHHHHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVD-AKADKLRGEMLDLQ   83 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D-~~~~~l~~~~~dl~   83 (350)
                      .+++.|+|| |.+|..++..|+..|.  +|+++| +++++++....++.
T Consensus        46 ~k~~lVTGas~GIG~aia~~La~~G~--~Vv~~~~r~~~~~~~~~~~l~   92 (328)
T 2qhx_A           46 VPVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSAAEANALSATLN   92 (328)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHH
Confidence            356778898 8999999999999995  899999 99887776555554

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=96.47  E-value=0.011  Score=53.50  Aligned_cols=116  Identities=11%  Similarity=0.150  Sum_probs=69.6

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc---------
Q 018760           35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV---------  102 (350)
Q Consensus        35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a---------  102 (350)
                      -+.+++.|+|+ |.+|..++..|++.|.  +|+++|++.++++....++.....  ........  +|.++         
T Consensus        25 l~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~  100 (277)
T 4fc7_A           25 LRDKVAFITGGGSGIGFRIAEIFMRHGC--HTVIASRSLPRVLTAARKLAGATG--RRCLPLSMDVRAPPAVMAAVDQAL  100 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHH
Confidence            34467889998 8999999999999995  999999998877766666654321  12222211  12111         


Q ss_pred             --cCCCCEEEEecCCCcC-c--cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 --TAGSDLCIVTAGARQI-A--GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 --l~~aDiVIi~~g~~~~-~--g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                        +...|++|.++|.... +  ..+.   ...+.-|    ..+.+.+.+.+.+. ..+.||++|-
T Consensus       101 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS  164 (277)
T 4fc7_A          101 KEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRD-HGGVIVNITA  164 (277)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHH-HCEEEEEECC
T ss_pred             HHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECc
Confidence              2378999999885431 1  1121   1223334    33444555555443 2466777764

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=96.46  E-value=0.0023  Score=58.82  Aligned_cols=106  Identities=14%  Similarity=0.199  Sum_probs=66.9

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccCC-
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAG-  105 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~-  105 (350)
                      ..++++|.|+|| |.+|+.++..|+..|.  +|+++|++++. +.    +        ...+...  +|.    +++++ 
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~-~~----l--------~~~~~~~Dl~d~~~~~~~~~~~   73 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHLTEQNV--EVFGTSRNNEA-KL----P--------NVEMISLDIMDSQRVKKVISDI   73 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCTTC-CC----T--------TEEEEECCTTCHHHHHHHHHHH
T ss_pred             ccCcceEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcc-cc----c--------eeeEEECCCCCHHHHHHHHHhc
Confidence            456789999999 9999999999999885  99999998754 21    1        1122211  122    23444 


Q ss_pred             -CCEEEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          106 -SDLCIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       106 -aDiVIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                       .|+||.+++.....  .....+.+..|+.-...+++.+.+......+|.+|
T Consensus        74 ~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~S  125 (321)
T 2pk3_A           74 KPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIG  125 (321)
T ss_dssp             CCSEEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred             CCCEEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEc
Confidence             89999998754311  12344556678777777877776553334566655

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=96.46  E-value=0.036  Score=52.40  Aligned_cols=114  Identities=13%  Similarity=0.183  Sum_probs=69.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHH-hcCCCCeEEEEeCCccc---------hHHHHHHHHHHhhc--CCC---ceEEEc--CC
Q 018760           38 TKISVIGT-GNVGMAIAQTIL-TQDFVEELALVDAKADK---------LRGEMLDLQHAAAF--LPR---TKILAS--VD   99 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~-~~~~~~ev~L~D~~~~~---------l~~~~~dl~~~~~~--~~~---~~v~~t--~~   99 (350)
                      |+|.|+|| |.+|++++..|+ ..+.  +|+++|++...         .+.....+......  ...   ..+...  +|
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d   80 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN   80 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCC--EEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCC
Confidence            69999998 999999999999 8884  89999987543         22221112221110  011   333322  12


Q ss_pred             c----cccC--C-CCEEEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          100 Y----AVTA--G-SDLCIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       100 ~----~al~--~-aDiVIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      .    ++++  + +|+||.+++.....  .....+.+..|+.-...+++.+.+..... +|++|
T Consensus        81 ~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~-iv~~S  143 (397)
T 1gy8_A           81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDK-IIFSS  143 (397)
T ss_dssp             HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCE-EEEEE
T ss_pred             HHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCE-EEEEC
Confidence            2    2344  5 99999998754211  12234556778888888888887765443 44444

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=96.46  E-value=0.026  Score=49.94  Aligned_cols=111  Identities=15%  Similarity=0.229  Sum_probs=66.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCc-eEEEc--CCccc---------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRT-KILAS--VDYAV---------  102 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~-~v~~t--~~~~a---------  102 (350)
                      +.++|.|+|| |.+|..++..|++.|.  +|+++|+++++++....++..      .. .....  +|.+.         
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~   81 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGA--RLILIDREAAALDRAAQELGA------AVAARIVADVTDAEAMTAAAAEAE   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG------GEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcc------cceeEEEEecCCHHHHHHHHHHHH
Confidence            3457999998 9999999999999985  899999998776644433311      11 11111  12221         


Q ss_pred             -cCCCCEEEEecCCCcCc---cccH---HHHHHhhHH----HHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 -TAGSDLCIVTAGARQIA---GESR---LNLLQRNLS----LFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 -l~~aDiVIi~~g~~~~~---g~~r---~~~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                       +...|+||.++|.....   ..+.   ...+..|+.    +.+.+.+.+.+.. .+.+|++|.
T Consensus        82 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~isS  144 (254)
T 2wsb_A           82 AVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG-AGAIVNLGS  144 (254)
T ss_dssp             HHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             hhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEec
Confidence             24789999998864321   1111   223334433    3455555555543 455666654

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=96.45  E-value=0.0029  Score=60.15  Aligned_cols=75  Identities=20%  Similarity=0.248  Sum_probs=52.8

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-cccCCCCEEEE
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-AVTAGSDLCIV  111 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-~al~~aDiVIi  111 (350)
                      .++.+|.|+|+|.+|...+..+...|.  +|+++|+++++++........      ...+...  .+. +.++++|+||.
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~Ga--~V~v~dr~~~r~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~DvVI~  236 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGLGA--QVQIFDINVERLSYLETLFGS------RVELLYSNSAEIETAVAEADLLIG  236 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG------GSEEEECCHHHHHHHHHTCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHhhCc------eeEeeeCCHHHHHHHHcCCCEEEE
Confidence            345799999999999999999998886  899999999887643211111      1112211  122 45789999999


Q ss_pred             ecCCCc
Q 018760          112 TAGARQ  117 (350)
Q Consensus       112 ~~g~~~  117 (350)
                      +.+.+.
T Consensus       237 ~~~~~~  242 (361)
T 1pjc_A          237 AVLVPG  242 (361)
T ss_dssp             CCCCTT
T ss_pred             CCCcCC
Confidence            987653

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=96.45  E-value=0.081  Score=47.38  Aligned_cols=115  Identities=17%  Similarity=0.246  Sum_probs=69.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----------  102 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----------  102 (350)
                      +.+++.|+|| |.+|..++..|++.|.  +|++.|+++++++....++...... ........  +|.++          
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGA--AVAFCARDGERLRAAESALRQRFPG-ARLFASVCDVLDALQVRAFAEACER   83 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTT-CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcCC-ceEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3457888998 8999999999999995  8999999998887766666653210 11222211  12111          


Q ss_pred             -cCCCCEEEEecCCCcCc---cccH---HHHHHhhH----HHHHHHHhhhhccCCCeEEEEEc
Q 018760          103 -TAGSDLCIVTAGARQIA---GESR---LNLLQRNL----SLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       103 -l~~aDiVIi~~g~~~~~---g~~r---~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                       +...|++|.++|.....   ..+.   ...+.-|+    .+.+.+.+.+.+. ..+.||++|
T Consensus        84 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~is  145 (265)
T 3lf2_A           84 TLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESR-ADAAIVCVN  145 (265)
T ss_dssp             HHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-TTEEEEEEE
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCeEEEEEC
Confidence             23679999999864321   1222   22233443    3455555555543 356666665

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=96.44  E-value=0.0029  Score=60.57  Aligned_cols=76  Identities=22%  Similarity=0.246  Sum_probs=53.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-cccCCCCEEE
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-AVTAGSDLCI  110 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-~al~~aDiVI  110 (350)
                      ..+..+|+|+|+|.+|..++..+...|.  +|+.+|+++++++.    +.....  ....+...  .+. +.++++|+||
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga--~V~~~d~~~~~l~~----~~~~~g--~~~~~~~~~~~~l~~~l~~aDvVi  236 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGA--TVTVLDINIDKLRQ----LDAEFC--GRIHTRYSSAYELEGAVKRADLVI  236 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHH----HHHHTT--TSSEEEECCHHHHHHHHHHCSEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEeCCHHHHHH----HHHhcC--CeeEeccCCHHHHHHHHcCCCEEE
Confidence            3456799999999999999999998886  89999999887653    222111  11112111  123 4578999999


Q ss_pred             EecCCCc
Q 018760          111 VTAGARQ  117 (350)
Q Consensus       111 i~~g~~~  117 (350)
                      .+++.|.
T Consensus       237 ~~~~~p~  243 (377)
T 2vhw_A          237 GAVLVPG  243 (377)
T ss_dssp             ECCCCTT
T ss_pred             ECCCcCC
Confidence            9987664

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=96.44  E-value=0.0016  Score=60.93  Aligned_cols=70  Identities=9%  Similarity=0.123  Sum_probs=47.6

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEE-EEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccC--CCCEEE
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELA-LVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTA--GSDLCI  110 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~-L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~--~aDiVI  110 (350)
                      .+++||+|||+|.+|..++..|...+-+ +|+ ++|+++++++.    +.....   ..+  ..++++ .+.  ++|+|+
T Consensus         3 m~~~~igiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~----~~~~~~---~~~--~~~~~~~ll~~~~~D~V~   72 (330)
T 3e9m_A            3 LDKIRYGIMSTAQIVPRFVAGLRESAQA-EVRGIASRRLENAQK----MAKELA---IPV--AYGSYEELCKDETIDIIY   72 (330)
T ss_dssp             CCCEEEEECSCCTTHHHHHHHHHHSSSE-EEEEEBCSSSHHHHH----HHHHTT---CCC--CBSSHHHHHHCTTCSEEE
T ss_pred             CCeEEEEEECchHHHHHHHHHHHhCCCc-EEEEEEeCCHHHHHH----HHHHcC---CCc--eeCCHHHHhcCCCCCEEE
Confidence            3568999999999999999888876432 544 78999887653    322221   111  245664 344  799999


Q ss_pred             EecC
Q 018760          111 VTAG  114 (350)
Q Consensus       111 i~~g  114 (350)
                      ++..
T Consensus        73 i~tp   76 (330)
T 3e9m_A           73 IPTY   76 (330)
T ss_dssp             ECCC
T ss_pred             EcCC
Confidence            9953

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=96.44  E-value=0.0038  Score=58.26  Aligned_cols=66  Identities=12%  Similarity=0.178  Sum_probs=48.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      +...++|+|||.|.||..++..+...|.  +|+.+|+++++..     ... .    ....  . +. +.+++||+|+++
T Consensus       139 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~-----~~~-~----g~~~--~-~l~ell~~aDvVvl~  203 (313)
T 2ekl_A          139 ELAGKTIGIVGFGRIGTKVGIIANAMGM--KVLAYDILDIREK-----AEK-I----NAKA--V-SLEELLKNSDVISLH  203 (313)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHTTC--EEEEECSSCCHHH-----HHH-T----TCEE--C-CHHHHHHHCSEEEEC
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHHCCC--EEEEECCCcchhH-----HHh-c----Ccee--c-CHHHHHhhCCEEEEe
Confidence            4456799999999999999999988885  8999999876421     111 1    1121  2 45 568899999999


Q ss_pred             cC
Q 018760          113 AG  114 (350)
Q Consensus       113 ~g  114 (350)
                      ..
T Consensus       204 ~P  205 (313)
T 2ekl_A          204 VT  205 (313)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.44  E-value=0.0049  Score=57.67  Aligned_cols=95  Identities=16%  Similarity=0.252  Sum_probs=60.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeC-CccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEE
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDA-KADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIV  111 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~-~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi  111 (350)
                      +...++|+|||.|.||..+|..+...|.  +|+.+|+ ++++..     ... .    ...  ...+. +.+++||+|++
T Consensus       143 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~-----~~~-~----g~~--~~~~l~ell~~aDvVil  208 (320)
T 1gdh_A          143 KLDNKTLGIYGFGSIGQALAKRAQGFDM--DIDYFDTHRASSSD-----EAS-Y----QAT--FHDSLDSLLSVSQFFSL  208 (320)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC--EEEEECSSCCCHHH-----HHH-H----TCE--ECSSHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC--EEEEECCCCcChhh-----hhh-c----CcE--EcCCHHHHHhhCCEEEE
Confidence            4456799999999999999999987774  8999999 876421     111 1    112  23345 56889999999


Q ss_pred             ecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          112 TAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       112 ~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +.....   +++        .++.  ...+....|++++|+++.
T Consensus       209 ~~p~~~---~t~--------~~i~--~~~l~~mk~gailIn~ar  239 (320)
T 1gdh_A          209 NAPSTP---ETR--------YFFN--KATIKSLPQGAIVVNTAR  239 (320)
T ss_dssp             CCCCCT---TTT--------TCBS--HHHHTTSCTTEEEEECSC
T ss_pred             eccCch---HHH--------hhcC--HHHHhhCCCCcEEEECCC
Confidence            964321   011        1110  012233467899999874

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=96.43  E-value=0.011  Score=52.72  Aligned_cols=116  Identities=12%  Similarity=0.151  Sum_probs=66.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----------  102 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----------  102 (350)
                      +.++|.|+|| |.+|..++..|++.|.  +|+++|++.++......++.....  ....+...  +|.+.          
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~   88 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEFG--VKTKAYQCDVSNTDIVTKTIQQIDA   88 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHHT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCcchhhHHHHHHHHHhcC--CeeEEEEeeCCCHHHHHHHHHHHHH
Confidence            3457999998 9999999999999985  899999977665544444433211  12222211  12111          


Q ss_pred             -cCCCCEEEEecCCCcCc---cccH---HHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 -TAGSDLCIVTAGARQIA---GESR---LNLLQRNL----SLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 -l~~aDiVIi~~g~~~~~---g~~r---~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                       +...|+||.++|.....   ..+.   ...+..|+    .+.+.+.+.+.+....+.+|++|-
T Consensus        89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  152 (265)
T 1h5q_A           89 DLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSS  152 (265)
T ss_dssp             HSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             hcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence             23489999998864321   1111   22233443    344444555544444466666653

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=96.43  E-value=0.0029  Score=58.75  Aligned_cols=90  Identities=13%  Similarity=0.250  Sum_probs=59.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      ....++|+|||.|.||..+|..+...|.  +|+.+|++++  +.        . .     . ...+. +.++.||+|+++
T Consensus       121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~--~V~~~dr~~~--~~--------~-~-----~-~~~~l~ell~~aDvV~l~  181 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEIGTRVGKILAALGA--QVRGFSRTPK--EG--------P-W-----R-FTNSLEEALREARAAVCA  181 (303)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTC--EEEEECSSCC--CS--------S-S-----C-CBSCSHHHHTTCSEEEEC
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHCCC--EEEEECCCcc--cc--------C-c-----c-cCCCHHHHHhhCCEEEEe
Confidence            3456799999999999999999988885  8999999875  21        1 1     0 12244 568999999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      .....   +++        .++.  .+.+....|++++|+++.
T Consensus       182 ~P~~~---~t~--------~~i~--~~~l~~mk~gailin~sr  211 (303)
T 1qp8_A          182 LPLNK---HTR--------GLVK--YQHLALMAEDAVFVNVGR  211 (303)
T ss_dssp             CCCST---TTT--------TCBC--HHHHTTSCTTCEEEECSC
T ss_pred             CcCch---HHH--------HHhC--HHHHhhCCCCCEEEECCC
Confidence            64321   010        1110  022333468899999974

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.43  E-value=0.0044  Score=58.32  Aligned_cols=67  Identities=15%  Similarity=0.211  Sum_probs=49.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      ....+||+|||+|.||..+|..+...|.  +|+.+|+++++ + ..   .. .    ...  . .+. +.+++||+|+++
T Consensus       147 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~--~V~~~d~~~~~-~-~~---~~-~----g~~--~-~~l~~~l~~aDvVil~  211 (334)
T 2dbq_A          147 DVYGKTIGIIGLGRIGQAIAKRAKGFNM--RILYYSRTRKE-E-VE---RE-L----NAE--F-KPLEDLLRESDFVVLA  211 (334)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCCH-H-HH---HH-H----CCE--E-CCHHHHHHHCSEEEEC
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHhCCC--EEEEECCCcch-h-hH---hh-c----Ccc--c-CCHHHHHhhCCEEEEC
Confidence            4456799999999999999999998885  89999998865 2 11   11 1    112  2 255 568999999999


Q ss_pred             cCC
Q 018760          113 AGA  115 (350)
Q Consensus       113 ~g~  115 (350)
                      ...
T Consensus       212 vp~  214 (334)
T 2dbq_A          212 VPL  214 (334)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            753

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.43  E-value=0.0033  Score=57.60  Aligned_cols=76  Identities=12%  Similarity=0.138  Sum_probs=48.9

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccch-HHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCCE
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKL-RGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSDL  108 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l-~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aDi  108 (350)
                      ++||.|+|| |.+|+.++..|+..+.  +|++++++.... ......+.....  ....+...  +|   . ++++++|+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~l~~~~~~~d~   79 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFKQ--LGAKLIEASLDDHQRLVDALKQVDV   79 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHHT--TTCEEECCCSSCHHHHHHHHTTCSE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--cEEEEECCCcccchhHHHHHHHHHh--CCeEEEeCCCCCHHHHHHHHhCCCE
Confidence            568999998 9999999999999884  899999985321 011112221111  12233321  12   2 45789999


Q ss_pred             EEEecCCC
Q 018760          109 CIVTAGAR  116 (350)
Q Consensus       109 VIi~~g~~  116 (350)
                      ||.+++..
T Consensus        80 vi~~a~~~   87 (313)
T 1qyd_A           80 VISALAGG   87 (313)
T ss_dssp             EEECCCCS
T ss_pred             EEECCccc
Confidence            99998754

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=96.43  E-value=0.0051  Score=54.66  Aligned_cols=56  Identities=20%  Similarity=0.344  Sum_probs=42.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeE-EEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-cc-CCCCEEEEecC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEEL-ALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VT-AGSDLCIVTAG  114 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev-~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al-~~aDiVIi~~g  114 (350)
                      |||+|||+|.||..++..|...++  +| .++|+++ +.+.                  ..++++ .+ .++|+|+++.+
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~--~lv~v~d~~~-~~~~------------------~~~~~~~l~~~~~DvVv~~~~   59 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGF--EIAAILDVRG-EHEK------------------MVRGIDEFLQREMDVAVEAAS   59 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--EEEEEECSSC-CCTT------------------EESSHHHHTTSCCSEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCC--EEEEEEecCc-chhh------------------hcCCHHHHhcCCCCEEEECCC
Confidence            699999999999999988886665  76 6899885 3321                  234564 35 68999999963

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=96.43  E-value=0.0026  Score=60.06  Aligned_cols=69  Identities=12%  Similarity=0.121  Sum_probs=47.5

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCe-EEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-cc--CCCCEEE
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEE-LALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VT--AGSDLCI  110 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~e-v~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al--~~aDiVI  110 (350)
                      .+++||+|||+|.+|...+..|...+-+ + +.++|+++++++..+    ....    .+.  .++++ .+  .++|+|+
T Consensus         3 ~~~~~vgiiG~G~~g~~~~~~l~~~~~~-~lvav~d~~~~~~~~~~----~~~g----~~~--~~~~~~~l~~~~~D~V~   71 (354)
T 3db2_A            3 YNPVGVAAIGLGRWAYVMADAYTKSEKL-KLVTCYSRTEDKREKFG----KRYN----CAG--DATMEALLAREDVEMVI   71 (354)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHTTCSSE-EEEEEECSSHHHHHHHH----HHHT----CCC--CSSHHHHHHCSSCCEEE
T ss_pred             CCcceEEEEccCHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHH----HHcC----CCC--cCCHHHHhcCCCCCEEE
Confidence            3568999999999999999888776322 5 458899988776432    2211    122  45664 45  5799999


Q ss_pred             EecC
Q 018760          111 VTAG  114 (350)
Q Consensus       111 i~~g  114 (350)
                      ++..
T Consensus        72 i~tp   75 (354)
T 3db2_A           72 ITVP   75 (354)
T ss_dssp             ECSC
T ss_pred             EeCC
Confidence            9964

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=96.42  E-value=0.0033  Score=61.28  Aligned_cols=134  Identities=16%  Similarity=0.201  Sum_probs=74.2

Q ss_pred             hhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCC-CeEEEEe----CC--ccchHHH--HHHHHHHhhcCC
Q 018760           20 TFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFV-EELALVD----AK--ADKLRGE--MLDLQHAAAFLP   90 (350)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~-~ev~L~D----~~--~~~l~~~--~~dl~~~~~~~~   90 (350)
                      ||...++..+.   ..+..||+|+|||.+|.+++..|+..|.- .+|+++|    ++  .++.+..  ..++........
T Consensus       172 G~~~AL~~~g~---~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~  248 (439)
T 2dvm_A          172 GLLNALKVVGK---KISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKT  248 (439)
T ss_dssp             HHHHHHHHHTC---CTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTS
T ss_pred             HHHHHHHHhCC---CccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhcc
Confidence            55555544443   23446899999999999999999998852 5899999    76  2222110  111111110000


Q ss_pred             CceEEEcCCc-cccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch-HHHHHHHHh
Q 018760           91 RTKILASVDY-AVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI-LTYVAWKLS  168 (350)
Q Consensus        91 ~~~v~~t~~~-~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~-~~~~~~~~s  168 (350)
                      ..... ..+. ++++++|++|.+.+.+  +|...        +   +..   +...++.+|+-++||... +...+.+. 
T Consensus       249 ~~~~~-~~~L~e~l~~aDVlInaT~~~--~G~~~--------~---e~v---~~m~~~~iVfDLynP~~t~~~~~A~~~-  310 (439)
T 2dvm_A          249 NGENI-EGGPQEALKDADVLISFTRPG--PGVIK--------P---QWI---EKMNEDAIVFPLANPVPEILPEEAKKA-  310 (439)
T ss_dssp             CTTCC-CSSHHHHHTTCSEEEECSCCC--SSSSC--------H---HHH---TTSCTTCEEEECCSSSCSSCHHHHHHH-
T ss_pred             ccccc-cccHHHHhccCCEEEEcCCCc--cCCCC--------h---HHH---HhcCCCCEEEECCCCCCcchHHHHHHc-
Confidence            11011 1234 6789999999986542  13211        0   111   223467788888999854 44444443 


Q ss_pred             CCCCCcEee
Q 018760          169 GLPSNRVIG  177 (350)
Q Consensus       169 g~~~~rviG  177 (350)
                      |.   ++++
T Consensus       311 G~---~iva  316 (439)
T 2dvm_A          311 GA---RIVA  316 (439)
T ss_dssp             TC---SEEC
T ss_pred             CC---eEEc
Confidence            43   5553

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=96.42  E-value=0.018  Score=50.37  Aligned_cols=109  Identities=15%  Similarity=0.222  Sum_probs=64.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------  102 (350)
                      .++|.|+|| |.+|..++..|++.|.  +|+++|+++++++....++.       .......  +|.++           
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-------~~~~~~~D~~~~~~~~~~~~~~~~~   75 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGY--RVGLMARDEKRLQALAAELE-------GALPLPGDVREEGDWARAVAAMEEA   75 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHST-------TCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhh-------hceEEEecCCCHHHHHHHHHHHHHH
Confidence            357899998 9999999999999985  89999998876653322221       1122211  12111           


Q ss_pred             cCCCCEEEEecCCCcC-c--cccH---HHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 TAGSDLCIVTAGARQI-A--GESR---LNLLQRNL----SLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~-~--g~~r---~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +...|+||.++|.... +  ..+.   ...+..|+    ...+.+.+.+.+.. .+.+|++|-
T Consensus        76 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~~~iv~isS  137 (234)
T 2ehd_A           76 FGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRG-GGTIVNVGS  137 (234)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CcEEEEECC
Confidence            2378999999886431 1  1111   22333343    23455566665533 456777754

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=96.42  E-value=0.017  Score=51.94  Aligned_cols=115  Identities=16%  Similarity=0.237  Sum_probs=66.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEE-EeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc----
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELAL-VDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT----  103 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L-~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al----  103 (350)
                      +.++|.|+|| |.+|..++..|++.|.  +|++ .+++.++++....++....   ....+...  +|.+    .+    
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~   99 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGF--NIGVHYHRDAAGAQETLNAIVANG---GNGRLLSFDVANREQCREVLEHEI   99 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC---CceEEEEecCCCHHHHHHHHHHHH
Confidence            3457888898 8999999999999995  7756 4566666655454554321   22333322  1211    12    


Q ss_pred             ---CCCCEEEEecCCCcCc---cccH---HHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 ---AGSDLCIVTAGARQIA---GESR---LNLLQRNL----SLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 ---~~aDiVIi~~g~~~~~---g~~r---~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                         ...|+||.++|.....   ..+.   ...+.-|+    .+.+...+.+.+....+.||++|-
T Consensus       100 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  164 (267)
T 4iiu_A          100 AQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSS  164 (267)
T ss_dssp             HHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             HHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence               3789999998865321   1121   22333343    344444555544455677777764

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=96.42  E-value=0.019  Score=50.79  Aligned_cols=107  Identities=14%  Similarity=0.197  Sum_probs=64.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------c
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------T  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------l  103 (350)
                      +++.|+|| |.+|..++..|++.|.  +|++.|+++++++....++..      .......  +|.++           +
T Consensus         4 k~vlVTGas~GIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~------~~~~~~~D~~~~~~v~~~~~~~~~~~   75 (235)
T 3l6e_A            4 GHIIVTGAGSGLGRALTIGLVERGH--QVSMMGRRYQRLQQQELLLGN------AVIGIVADLAHHEDVDVAFAAAVEWG   75 (235)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG------GEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcC------CceEEECCCCCHHHHHHHHHHHHHhc
Confidence            46889998 8999999999999995  899999999877755444421      1111111  12111           2


Q ss_pred             CCCCEEEEecCCCcC-c--cccH---HHHHHhhH----HHHHHHHhhhhccCCCeEEEEEc
Q 018760          104 AGSDLCIVTAGARQI-A--GESR---LNLLQRNL----SLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~-~--g~~r---~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ...|++|.++|.... +  ..+.   ...+.-|+    .+.+.+.+.+.+..  +.+|+++
T Consensus        76 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~~iv~is  134 (235)
T 3l6e_A           76 GLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERG--GVLANVL  134 (235)
T ss_dssp             CSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--EEEEEEC
T ss_pred             CCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CEEEEEe
Confidence            367999999986421 1  1121   22333443    34455555555432  3566665

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=96.41  E-value=0.011  Score=56.02  Aligned_cols=73  Identities=14%  Similarity=0.301  Sum_probs=51.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc-------------------cchHHHHHHHHHHhhcCCCceEEEc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA-------------------DKLRGEMLDLQHAAAFLPRTKILAS   97 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~v~~t   97 (350)
                      ..+|+|+|+|.+|+.++..|+..|+ ++|+|+|-+.                   .|++..+..+....   +..++...
T Consensus        36 ~~~VlivG~GGlG~~ia~~La~~Gv-g~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~ln---p~v~v~~~  111 (346)
T 1y8q_A           36 ASRVLLVGLKGLGAEIAKNLILAGV-KGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLN---PMVDVKVD  111 (346)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTC---TTSEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHC---CCeEEEEE
Confidence            4699999999999999999999996 6999998642                   24444444444432   45555543


Q ss_pred             CC------ccccCCCCEEEEec
Q 018760           98 VD------YAVTAGSDLCIVTA  113 (350)
Q Consensus        98 ~~------~~al~~aDiVIi~~  113 (350)
                      +.      .+.++++|+||.+.
T Consensus       112 ~~~~~~~~~~~~~~~dvVv~~~  133 (346)
T 1y8q_A          112 TEDIEKKPESFFTQFDAVCLTC  133 (346)
T ss_dssp             CSCGGGCCHHHHTTCSEEEEES
T ss_pred             ecccCcchHHHhcCCCEEEEcC
Confidence            22      13478999999984

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=96.41  E-value=0.0026  Score=62.12  Aligned_cols=93  Identities=18%  Similarity=0.199  Sum_probs=58.5

Q ss_pred             hhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHH-HH------------Hh
Q 018760           20 TFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL-QH------------AA   86 (350)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl-~~------------~~   86 (350)
                      ++.+-++.|..   +.+++||+|||+|.+|+.++..+...+-+.=+.++|+++++++....++ ..            ..
T Consensus         9 ~l~~~l~~r~~---~~k~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~   85 (446)
T 3upl_A            9 GLARDLAARAE---TGKPIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMT   85 (446)
T ss_dssp             HHHHHHHHHHH---TTCCEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHH
T ss_pred             HHHHHHHHHHh---cCCceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhh
Confidence            34444556654   5567899999999999999887766543334678999998887544333 10            00


Q ss_pred             hcCCCceEEEcCCccc-cC--CCCEEEEecCC
Q 018760           87 AFLPRTKILASVDYAV-TA--GSDLCIVTAGA  115 (350)
Q Consensus        87 ~~~~~~~v~~t~~~~a-l~--~aDiVIi~~g~  115 (350)
                      .......+..++|+++ ++  +.|+|+++.+.
T Consensus        86 ~a~~~g~~~v~~D~eeLL~d~dIDaVviaTp~  117 (446)
T 3upl_A           86 RAIEAGKIAVTDDNDLILSNPLIDVIIDATGI  117 (446)
T ss_dssp             HHHHTTCEEEESCHHHHHTCTTCCEEEECSCC
T ss_pred             hhhccCCceEECCHHHHhcCCCCCEEEEcCCC
Confidence            0000112445678754 44  58999998653

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=96.41  E-value=0.0021  Score=55.24  Aligned_cols=111  Identities=14%  Similarity=0.147  Sum_probs=66.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccC---CCCEEEEe
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTA---GSDLCIVT  112 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~---~aDiVIi~  112 (350)
                      ++|.|+|| |.+|..++..|++.    +|+++|+++++++....++.. . + ...++.-..+. +.++   +.|+||.+
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~----~V~~~~r~~~~~~~~~~~~~~-~-~-~~~D~~~~~~~~~~~~~~~~id~vi~~   73 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH----DLLLSGRRAGALAELAREVGA-R-A-LPADLADELEAKALLEEAGPLDLLVHA   73 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS----EEEEECSCHHHHHHHHHHHTC-E-E-CCCCTTSHHHHHHHHHHHCSEEEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC----CEEEEECCHHHHHHHHHhccC-c-E-EEeeCCCHHHHHHHHHhcCCCCEEEEC
Confidence            47899999 99999999999887    899999988766543322211 1 0 01111100011 2233   78999999


Q ss_pred             cCCCcCc------cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          113 AGARQIA------GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       113 ~g~~~~~------g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      +|.....      .......+..|..-...+.+.+.+. +.+.+|++|-.
T Consensus        74 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~sS~  122 (207)
T 2yut_A           74 VGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQ-KGARAVFFGAY  122 (207)
T ss_dssp             CCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEE-EEEEEEEECCC
T ss_pred             CCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhc-CCcEEEEEcCh
Confidence            8864321      1122344556776666667666432 34567777643

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.41  E-value=0.0034  Score=57.31  Aligned_cols=102  Identities=14%  Similarity=0.215  Sum_probs=64.1

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcC-CCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCCE
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQD-FVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSDL  108 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~-~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aDi  108 (350)
                      +++|.|+|| |.+|+.++..|+..+ .  +|+++++++++...  ..+...     ...+...  +|   . ++++++|.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~R~~~~~~~--~~l~~~-----~~~~~~~D~~d~~~l~~~~~~~d~   75 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF--KVRVVTRNPRKKAA--KELRLQ-----GAEVVQGDQDDQVIMELALNGAYA   75 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS--EEEEEESCTTSHHH--HHHHHT-----TCEEEECCTTCHHHHHHHHTTCSE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc--eEEEEEcCCCCHHH--HHHHHC-----CCEEEEecCCCHHHHHHHHhcCCE
Confidence            478999999 999999999999876 4  89999998876532  223221     2233322  12   2 35789999


Q ss_pred             EEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          109 CIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       109 VIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ||.+++......      ...|....+.+++.+.+....- +|..|
T Consensus        76 vi~~a~~~~~~~------~~~~~~~~~~~~~aa~~~gv~~-iv~~S  114 (299)
T 2wm3_A           76 TFIVTNYWESCS------QEQEVKQGKLLADLARRLGLHY-VVYSG  114 (299)
T ss_dssp             EEECCCHHHHTC------HHHHHHHHHHHHHHHHHHTCSE-EEECC
T ss_pred             EEEeCCCCcccc------chHHHHHHHHHHHHHHHcCCCE-EEEEc
Confidence            999976421111      1234556666777776654433 44443

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=96.41  E-value=0.02  Score=52.97  Aligned_cols=112  Identities=13%  Similarity=0.229  Sum_probs=66.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----ccC--CCCE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VTA--GSDL  108 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al~--~aDi  108 (350)
                      |||.|+|| |.+|++++..|+..|.  +|+++|+...........+.....  ....+...  +|.+    +++  ++|+
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~D~   76 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLGG--KHPTFVEGDIRNEALMTEILHDHAIDT   76 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHHT--SCCEEEECCTTCHHHHHHHHHHTTCSE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCCcchhHHHHHHhhcC--CcceEEEccCCCHHHHHHHhhccCCCE
Confidence            68999998 9999999999999885  899998753222112222332111  12222211  1222    233  5899


Q ss_pred             EEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          109 CIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       109 VIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ||.+++.....  .....+.+..|+.-...+++.+.+.... .+|++|
T Consensus        77 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  123 (338)
T 1udb_A           77 VIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NFIFSS  123 (338)
T ss_dssp             EEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             EEECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCC-eEEEEc
Confidence            99998753211  1123345667888778888877765433 344444

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=96.40  E-value=0.014  Score=52.19  Aligned_cols=78  Identities=10%  Similarity=0.143  Sum_probs=51.8

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeC-CccchHHHHHHHHHHhhcCCCceEEEc--CCcc----ccC-
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDA-KADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VTA-  104 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~-~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al~-  104 (350)
                      ..+.++|.|+|| |.+|..++..|++.|.  +|+++++ ++++++....++....   ....+...  +|.+    .++ 
T Consensus        18 ~~~~k~vlItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~~~~~~~~   92 (274)
T 1ja9_A           18 PLAGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG---AQGVAIQADISKPSEVVALFDK   92 (274)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT---CCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcC---CcEEEEEecCCCHHHHHHHHHH
Confidence            334568999998 9999999999999985  8999999 7666654444454321   12222211  1221    122 


Q ss_pred             ------CCCEEEEecCCC
Q 018760          105 ------GSDLCIVTAGAR  116 (350)
Q Consensus       105 ------~aDiVIi~~g~~  116 (350)
                            +.|+||.++|..
T Consensus        93 ~~~~~~~~d~vi~~Ag~~  110 (274)
T 1ja9_A           93 AVSHFGGLDFVMSNSGME  110 (274)
T ss_dssp             HHHHHSCEEEEECCCCCC
T ss_pred             HHHHcCCCCEEEECCCCC
Confidence                  789999998864

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=96.40  E-value=0.023  Score=49.98  Aligned_cols=115  Identities=18%  Similarity=0.183  Sum_probs=66.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCC-----eEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c--
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVE-----ELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T--  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~-----ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l--  103 (350)
                      ++|.|+|| |.+|..++..|++.|...     +|+++++++++++....++....   ....+...  ++.+.    +  
T Consensus         3 k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~   79 (244)
T 2bd0_A            3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG---ALTDTITADISDMADVRRLTTH   79 (244)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT---CEEEEEECCTTSHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccC---CeeeEEEecCCCHHHHHHHHHH
Confidence            47899998 999999999999988421     79999999877765444443211   11222211  12111    1  


Q ss_pred             -----CCCCEEEEecCCCcCc---ccc---HHHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          104 -----AGSDLCIVTAGARQIA---GES---RLNLLQRNL----SLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       104 -----~~aDiVIi~~g~~~~~---g~~---r~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                           ...|+||.++|.....   ..+   -...+..|+    .+.+.+.+.+.+. ..+.+|++|..
T Consensus        80 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~isS~  146 (244)
T 2bd0_A           80 IVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ-HSGHIFFITSV  146 (244)
T ss_dssp             HHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             HHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCEEEEEecc
Confidence                 2799999999864321   111   122233343    3444555555443 34567777643

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=96.40  E-value=0.04  Score=50.99  Aligned_cols=115  Identities=14%  Similarity=0.214  Sum_probs=67.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCC------------ccchHHHHHHHHHHhhcCCCceEEEc--CCcc
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAK------------ADKLRGEMLDLQHAAAFLPRTKILAS--VDYA  101 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~------------~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~  101 (350)
                      .+++.|+|| |.+|..++..|++.|.  +|+++|++            +++++.....+...   .........  +|.+
T Consensus        46 gk~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~d~~  120 (317)
T 3oec_A           46 GKVAFITGAARGQGRTHAVRLAQDGA--DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ---GRRIIARQADVRDLA  120 (317)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT---TCCEEEEECCTTCHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--eEEEEecccccccccccccCHHHHHHHHHHHHhc---CCeEEEEECCCCCHH
Confidence            346778898 8999999999999995  89999986            33333322233221   112222211  1211


Q ss_pred             c----c-------CCCCEEEEecCCCcCc---cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          102 V----T-------AGSDLCIVTAGARQIA---GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       102 a----l-------~~aDiVIi~~g~~~~~---g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      +    +       ...|++|..+|.....   ..+.   ...+..|    ..+.+.+.+.+.+....+.||++|-.
T Consensus       121 ~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~  196 (317)
T 3oec_A          121 SLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSST  196 (317)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCG
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcH
Confidence            1    2       3789999998864321   1122   1223334    44566666777665556777777643

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=96.40  E-value=0.055  Score=48.77  Aligned_cols=111  Identities=20%  Similarity=0.211  Sum_probs=72.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------ccc
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------AVT  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~al  103 (350)
                      +.+.|.|| +.+|..+|..|++.|.  .|+++|+++++++..+.++....   ........  ++.           +.+
T Consensus         8 KvalVTGas~GIG~aiA~~la~~Ga--~Vv~~~~~~~~~~~~~~~i~~~g---~~~~~~~~Dvt~~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            8 KVVIVTGAGSGIGRAIAKKFALNDS--IVVAVELLEDRLNQIVQELRGMG---KEVLGVKADVSKKKDVEEFVRRTFETY   82 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45667798 7999999999999995  89999999999887777776432   12221111  111           224


Q ss_pred             CCCCEEEEecCCCc--Cc--cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEc
Q 018760          104 AGSDLCIVTAGARQ--IA--GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       104 ~~aDiVIi~~g~~~--~~--g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ..-|++|..+|...  .+  ..+..+   .+.-|    .-..+..++.|.+.. .+.||+++
T Consensus        83 G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnis  143 (254)
T 4fn4_A           83 SRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQG-KGVIVNTA  143 (254)
T ss_dssp             SCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEe
Confidence            57899999998532  22  122222   22223    456677788877754 46677775

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=96.39  E-value=0.0012  Score=61.57  Aligned_cols=110  Identities=15%  Similarity=0.148  Sum_probs=67.3

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc--chHHHHHHHHHHhhcCCCceEEEc--CCc----cccCCCC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD--KLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAGSD  107 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~--~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~aD  107 (350)
                      +|||.|+|| |.+|++++..|+..+...+|+++|++..  ..+.    +....  .....+...  +|.    ++++++|
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~----~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d   77 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKAN----LEAIL--GDRVELVVGDIADAELVDKLAAKAD   77 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGG----TGGGC--SSSEEEEECCTTCHHHHHHHHTTCS
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhH----Hhhhc--cCCeEEEECCCCCHHHHHHHhhcCC
Confidence            479999998 9999999999998832249999998652  1110    11110  012233221  122    3478899


Q ss_pred             EEEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          108 LCIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       108 iVIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +||.+++.....  .....+.+..|+.-...+++.+.+...  .+|.+|
T Consensus        78 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~--~~v~~S  124 (348)
T 1oc2_A           78 AIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVS  124 (348)
T ss_dssp             EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             EEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC--eEEEec
Confidence            999998754211  012234566677777778877777643  455554

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=96.38  E-value=0.053  Score=49.20  Aligned_cols=45  Identities=16%  Similarity=0.214  Sum_probs=36.9

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc-cchHHHHHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA-DKLRGEMLDLQ   83 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~-~~l~~~~~dl~   83 (350)
                      .+++.|+|| |.+|..++..|++.|.  +|+++|+++ ++++....++.
T Consensus        23 ~k~~lVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~~l~   69 (288)
T 2x9g_A           23 APAAVVTGAAKRIGRAIAVKLHQTGY--RVVIHYHNSAEAAVSLADELN   69 (288)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHHTC--EEEEEESSCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHHHHH
Confidence            357888898 8999999999999995  899999998 77765555554

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.38  E-value=0.0018  Score=59.66  Aligned_cols=71  Identities=15%  Similarity=0.192  Sum_probs=48.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc-chHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCCEE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD-KLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSDLC  109 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~-~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aDiV  109 (350)
                      +||.|+|| |.+|++++..|+..|.  +|++++++++ +.. ...++...     ..++...  +|   . ++++++|+|
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~-~~~~l~~~-----~v~~v~~Dl~d~~~l~~a~~~~d~v   83 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH--PTYVFTRPNSSKTT-LLDEFQSL-----GAIIVKGELDEHEKLVELMKKVDVV   83 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECTTCSCHH-HHHHHHHT-----TCEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC--cEEEEECCCCchhh-HHHHhhcC-----CCEEEEecCCCHHHHHHHHcCCCEE
Confidence            48999998 9999999999999884  8999999875 332 12223221     2233322  12   2 457899999


Q ss_pred             EEecCCC
Q 018760          110 IVTAGAR  116 (350)
Q Consensus       110 Ii~~g~~  116 (350)
                      |.+++..
T Consensus        84 i~~a~~~   90 (318)
T 2r6j_A           84 ISALAFP   90 (318)
T ss_dssp             EECCCGG
T ss_pred             EECCchh
Confidence            9998643

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=96.38  E-value=0.034  Score=49.63  Aligned_cols=78  Identities=17%  Similarity=0.295  Sum_probs=50.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCC-CCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----ccC---
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDF-VEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VTA---  104 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~-~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al~---  104 (350)
                      ++++|.|+|| |.+|..++..|++.+. ..+|+++|+++++++. ..++....   ....+...  ++.+    .++   
T Consensus        20 ~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~-~~~l~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~   95 (267)
T 1sny_A           20 HMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKE-LEDLAKNH---SNIHILEIDLRNFDAYDKLVADIE   95 (267)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHH-HHHHHHHC---TTEEEEECCTTCGGGHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHH-HHHhhccC---CceEEEEecCCChHHHHHHHHHHH
Confidence            4467889998 9999999999999882 1289999999877653 23343221   12222211  1221    122   


Q ss_pred             ------CCCEEEEecCCCc
Q 018760          105 ------GSDLCIVTAGARQ  117 (350)
Q Consensus       105 ------~aDiVIi~~g~~~  117 (350)
                            ..|+||.++|...
T Consensus        96 ~~~g~~~id~li~~Ag~~~  114 (267)
T 1sny_A           96 GVTKDQGLNVLFNNAGIAP  114 (267)
T ss_dssp             HHHGGGCCSEEEECCCCCC
T ss_pred             HhcCCCCccEEEECCCcCC
Confidence                  6999999998653

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=96.38  E-value=0.046  Score=50.65  Aligned_cols=116  Identities=17%  Similarity=0.227  Sum_probs=69.8

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT------  103 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al------  103 (350)
                      .++|.|+|| |.+|..++..|++.|.  +|++.|+++++++.....+..... .....+...  ++.+    .+      
T Consensus         8 ~k~vlVTGas~gIG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~   84 (319)
T 3ioy_A            8 GRTAFVTGGANGVGIGLVRQLLNQGC--KVAIADIRQDSIDKALATLEAEGS-GPEVMGVQLDVASREGFKMAADEVEAR   84 (319)
T ss_dssp             TCEEEEETTTSTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTC-GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC-CCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            457899999 9999999999999996  899999999888766666654321 001222211  1211    12      


Q ss_pred             -CCCCEEEEecCCCcC-c--cccH---HHHHHhh----HHHHHHHHhhhhcc-----CCCeEEEEEcC
Q 018760          104 -AGSDLCIVTAGARQI-A--GESR---LNLLQRN----LSLFKAIIPPLVKY-----SPDCILLIVAN  155 (350)
Q Consensus       104 -~~aDiVIi~~g~~~~-~--g~~r---~~~~~~n----~~i~~~i~~~i~~~-----~p~a~viv~tN  155 (350)
                       ...|+||.++|.... +  ..+.   ...+.-|    ..+.+.+.+.+.+.     ...+.||++|-
T Consensus        85 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS  152 (319)
T 3ioy_A           85 FGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTAS  152 (319)
T ss_dssp             TCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECC
T ss_pred             CCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecc
Confidence             356999999986421 1  1111   2233333    44555555555543     24566777764

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.38  E-value=0.0056  Score=56.11  Aligned_cols=102  Identities=12%  Similarity=0.168  Sum_probs=52.3

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccC--CCCEEEEe
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTA--GSDLCIVT  112 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~--~aDiVIi~  112 (350)
                      .|||.|+|| |.+|++++..|+..|.  +|+++|++.+. .    ..     .  ..++.-..+. ++++  ++|+||.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~-~----~~-----~--~~Dl~d~~~~~~~~~~~~~d~vih~   67 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNW--HAVGCGFRRAR-P----KF-----E--QVNLLDSNAVHHIIHDFQPHVIVHC   67 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEC------------------------------CHHHHHHHCCSEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCC--eEEEEccCCCC-C----Ce-----E--EecCCCHHHHHHHHHhhCCCEEEEC
Confidence            368999999 9999999999999884  99999986543 1    00     0  1122211122 3344  48999999


Q ss_pred             cCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          113 AGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       113 ~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ++.....  .....+.+..|+.-...+++.+.+...  .+|.+|
T Consensus        68 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  109 (315)
T 2ydy_A           68 AAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA--FLIYIS  109 (315)
T ss_dssp             C-------------------CHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             CcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            8754211  112233455577777777777776543  455554

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=96.38  E-value=0.0078  Score=60.71  Aligned_cols=35  Identities=20%  Similarity=0.558  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      +..||+|||||.+|+.++..|+..|+ ++|+|+|.|
T Consensus       326 ~~~kVLIVGaGGLGs~va~~La~aGV-G~ItLvD~D  360 (598)
T 3vh1_A          326 KNTKVLLLGAGTLGCYVSRALIAWGV-RKITFVDNG  360 (598)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHTTTC-CEEEEECCS
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCC-CEEEEECCC
Confidence            45799999999999999999999996 699999976

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=96.37  E-value=0.0024  Score=59.70  Aligned_cols=71  Identities=13%  Similarity=0.028  Sum_probs=46.4

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-cC--CCCEEEE
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-TA--GSDLCIV  111 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l~--~aDiVIi  111 (350)
                      .+++||+|||+|.+|..++..|...+-+.-+.++|+++++++..    ....  . ..++  .+++++ +.  ++|+|++
T Consensus         3 m~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~----a~~~--~-~~~~--~~~~~~ll~~~~~D~V~i   73 (329)
T 3evn_A            3 LSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAF----ANKY--H-LPKA--YDKLEDMLADESIDVIYV   73 (329)
T ss_dssp             --CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC-------CC--C-CSCE--ESCHHHHHTCTTCCEEEE
T ss_pred             CCceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHH----HHHc--C-CCcc--cCCHHHHhcCCCCCEEEE
Confidence            35689999999999999988887765333345789999887642    2211  1 1122  356643 55  7999999


Q ss_pred             ecC
Q 018760          112 TAG  114 (350)
Q Consensus       112 ~~g  114 (350)
                      +..
T Consensus        74 ~tp   76 (329)
T 3evn_A           74 ATI   76 (329)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            853

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.37  E-value=0.072  Score=48.58  Aligned_cols=116  Identities=8%  Similarity=0.091  Sum_probs=64.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c-----
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T-----  103 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l-----  103 (350)
                      +.+++.|+|| |.+|..++..|++.|.  +|++.|++++.......+.....  .....+...  +|.++    +     
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~  121 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA--NIAIAYLDEEGDANETKQYVEKE--GVKCVLLPGDLSDEQHCKDIVQETVR  121 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTT--TCCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            3457889998 8999999999999995  89999998764332222222211  112222211  12111    2     


Q ss_pred             --CCCCEEEEecCCCcCc----cccH---HHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcC
Q 018760          104 --AGSDLCIVTAGARQIA----GESR---LNLLQRNLSLFKAIIPPLVKY-SPDCILLIVAN  155 (350)
Q Consensus       104 --~~aDiVIi~~g~~~~~----g~~r---~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN  155 (350)
                        ...|++|.++|.....    ..+.   ...+.-|+.-...+.+.+.++ ...+.||+++-
T Consensus       122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS  183 (291)
T 3ijr_A          122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTAS  183 (291)
T ss_dssp             HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEec
Confidence              3689999998754211    1122   223444544334444444332 23456777653

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=96.37  E-value=0.021  Score=50.23  Aligned_cols=113  Identities=18%  Similarity=0.206  Sum_probs=67.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEE-eCCccchHHHHHHHHHHhhcCCCceE-EEc--CCccc----------
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALV-DAKADKLRGEMLDLQHAAAFLPRTKI-LAS--VDYAV----------  102 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~-D~~~~~l~~~~~dl~~~~~~~~~~~v-~~t--~~~~a----------  102 (350)
                      ++|.|+|| |.+|..++..|++.|.  +|+++ ++++++++....++....   ..... ...  +|.+.          
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~   76 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGF--ALAIHYGQNREKAEEVAEEARRRG---SPLVAVLGANLLEAEAATALVHQAAE   76 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESSCHHHHHHHHHHHHHTT---CSCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC---CceEEEEeccCCCHHHHHHHHHHHHH
Confidence            47889998 9999999999999985  88887 888776665444444321   12222 211  12211          


Q ss_pred             -cCCCCEEEEecCCCcCc---ccc---HHHHHHhhHHH----HHHHHhhhhccCCCeEEEEEcCC
Q 018760          103 -TAGSDLCIVTAGARQIA---GES---RLNLLQRNLSL----FKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       103 -l~~aDiVIi~~g~~~~~---g~~---r~~~~~~n~~i----~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                       +.+.|+||.++|.....   ..+   -...+..|+.-    .+.+.+.+.+.. .+.+|++|..
T Consensus        77 ~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~sS~  140 (245)
T 2ph3_A           77 VLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKAR-FGRIVNITSV  140 (245)
T ss_dssp             HHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCT
T ss_pred             hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcC-CCEEEEEeCh
Confidence             24789999998864321   111   12233444333    566666665543 3567777643

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=96.37  E-value=0.045  Score=44.82  Aligned_cols=107  Identities=9%  Similarity=0.080  Sum_probs=61.8

Q ss_pred             CCeEEEEcC----ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcccc-CCCCEEEE
Q 018760           37 HTKISVIGT----GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVT-AGSDLCIV  111 (350)
Q Consensus        37 ~~KI~IIGA----G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al-~~aDiVIi  111 (350)
                      +.+|+||||    |.+|..++..|...|+  +  ++++++.+.+     +   .    ..+  ...+.+++ ...|++++
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~--~--v~~Vnp~~~~-----i---~----G~~--~y~sl~~l~~~vDlvvi   83 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGY--D--VYPVNPKYEE-----V---L----GRK--CYPSVLDIPDKIEVVDL   83 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTC--E--EEEECTTCSE-----E---T----TEE--CBSSGGGCSSCCSEEEE
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCC--E--EEEECCCCCe-----E---C----Cee--ccCCHHHcCCCCCEEEE
Confidence            358999999    6899999999998886  5  6777765311     1   1    122  23345443 47899999


Q ss_pred             ecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCC
Q 018760          112 TAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTN  181 (350)
Q Consensus       112 ~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~  181 (350)
                      +..                .+...++++++.+....++++..+-...-+...+ +..|+   +++|=.|.
T Consensus        84 ~vp----------------~~~~~~vv~~~~~~gi~~i~~~~g~~~~~l~~~a-~~~Gi---~vvGpnc~  133 (144)
T 2d59_A           84 FVK----------------PKLTMEYVEQAIKKGAKVVWFQYNTYNREASKKA-DEAGL---IIVANRCM  133 (144)
T ss_dssp             CSC----------------HHHHHHHHHHHHHHTCSEEEECTTCCCHHHHHHH-HHTTC---EEEESCCH
T ss_pred             EeC----------------HHHHHHHHHHHHHcCCCEEEECCCchHHHHHHHH-HHcCC---EEEcCCch
Confidence            952                2334444445555555554332222222233333 34465   78876554

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=96.36  E-value=0.011  Score=54.58  Aligned_cols=106  Identities=14%  Similarity=0.240  Sum_probs=67.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhc-CCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC----c-cccCCCCE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQ-DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD----Y-AVTAGSDL  108 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~-~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~----~-~al~~aDi  108 (350)
                      |||.|+|| |.+|+.++..|+.. +.  +|++++++.++++.    +..    .....+...  +|    . ++++++|+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~----~~~----~~~~~~~~~D~~~~~~~~~~~~~~~d~   70 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAISR----FLN----HPHFHFVEGDISIHSEWIEYHVKKCDV   70 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC--EEEEEESCCGGGGG----GTT----CTTEEEEECCTTTCSHHHHHHHHHCSE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCC--EEEEEeCCcchHHH----hhc----CCCeEEEeccccCcHHHHHhhccCCCE
Confidence            58999999 99999999999987 64  89999998765542    110    012222211  11    1 24568999


Q ss_pred             EEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          109 CIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       109 VIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ||.+++.....  .....+.+..|+.-...+.+.+.+..  ..+|.+|-
T Consensus        71 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~v~~SS  117 (345)
T 2bll_A           71 VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPST  117 (345)
T ss_dssp             EEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECC
T ss_pred             EEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEec
Confidence            99998754211  11233445566666677777776654  45666654

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.36  E-value=0.024  Score=51.29  Aligned_cols=45  Identities=9%  Similarity=0.227  Sum_probs=36.9

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      .+++.|+|| |.+|..++..|++.|.  +|+++|+++++++....++.
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~   51 (280)
T 1xkq_A            6 NKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIIL   51 (280)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence            357888898 8999999999999985  89999999887765554554

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.36  E-value=0.021  Score=51.55  Aligned_cols=78  Identities=15%  Similarity=0.211  Sum_probs=49.8

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----ccC-----
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VTA-----  104 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al~-----  104 (350)
                      .+++.|+|| |.+|..++..|++.|.  +|+++|+++++++....++...............  +|.+    .++     
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (278)
T 1spx_A            6 EKVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   83 (278)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence            347888898 9999999999999985  8999999988776555455211100011222211  1211    233     


Q ss_pred             --CCCEEEEecCCC
Q 018760          105 --GSDLCIVTAGAR  116 (350)
Q Consensus       105 --~aDiVIi~~g~~  116 (350)
                        +.|+||.++|..
T Consensus        84 ~g~id~lv~~Ag~~   97 (278)
T 1spx_A           84 FGKLDILVNNAGAA   97 (278)
T ss_dssp             HSCCCEEEECCC--
T ss_pred             cCCCCEEEECCCCC
Confidence              799999998864

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.36  E-value=0.027  Score=49.97  Aligned_cols=108  Identities=17%  Similarity=0.147  Sum_probs=63.9

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------  102 (350)
                      .+++.|+|| |.+|..++..|++.|.  +|+++|+++++++....++    .    ......  +|.++           
T Consensus         5 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~----~----~~~~~~D~~~~~~~~~~~~~~~~~   74 (245)
T 1uls_A            5 DKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEAV----G----AHPVVMDVADPASVERGFAEALAH   74 (245)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTT----T----CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHc----C----CEEEEecCCCHHHHHHHHHHHHHH
Confidence            457899998 9999999999999985  8999999987665322211    0    111111  12211           


Q ss_pred             cCCCCEEEEecCCCcCc---cccH---HHHHHhhHH----HHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 TAGSDLCIVTAGARQIA---GESR---LNLLQRNLS----LFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~~---g~~r---~~~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +...|++|.++|.....   ..+.   ...+.-|+.    +.+.+.+.+.+. ..+.||++|-
T Consensus        75 ~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS  136 (245)
T 1uls_A           75 LGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREK-NPGSIVLTAS  136 (245)
T ss_dssp             HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEcc
Confidence            23589999999864321   1111   223334433    444455555443 3466777764

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=96.36  E-value=0.037  Score=49.80  Aligned_cols=45  Identities=16%  Similarity=0.240  Sum_probs=37.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeC-CccchHHHHHHHHH
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDA-KADKLRGEMLDLQH   84 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~-~~~~l~~~~~dl~~   84 (350)
                      +++.|+|| |.+|..++..|++.|.  +|+++|+ ++++++....++..
T Consensus        12 k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~   58 (276)
T 1mxh_A           12 PAAVITGGARRIGHSIAVRLHQQGF--RVVVHYRHSEGAAQRLVAELNA   58 (276)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHH
Confidence            47888898 8999999999999985  8999999 88777655555543

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=96.35  E-value=0.014  Score=56.87  Aligned_cols=92  Identities=15%  Similarity=0.190  Sum_probs=61.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      .....+|+|+|.|.+|..+|..+...|.  +|+.+|+++.+... +  .  ..    ..++.   +. +.++.||+|+.+
T Consensus       244 ~L~GKTVgVIG~G~IGr~vA~~lrafGa--~Viv~d~dp~~a~~-A--~--~~----G~~vv---~LeElL~~ADIVv~a  309 (464)
T 3n58_A          244 MMAGKVAVVCGYGDVGKGSAQSLAGAGA--RVKVTEVDPICALQ-A--A--MD----GFEVV---TLDDAASTADIVVTT  309 (464)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSHHHHHH-H--H--HT----TCEEC---CHHHHGGGCSEEEEC
T ss_pred             cccCCEEEEECcCHHHHHHHHHHHHCCC--EEEEEeCCcchhhH-H--H--hc----Cceec---cHHHHHhhCCEEEEC
Confidence            3455699999999999999999988886  89999998854321 0  1  11    12221   44 578999999998


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      .+...   .-       |       .+.+....|.+++||++..
T Consensus       310 tgt~~---lI-------~-------~e~l~~MK~GAILINvGRg  336 (464)
T 3n58_A          310 TGNKD---VI-------T-------IDHMRKMKDMCIVGNIGHF  336 (464)
T ss_dssp             CSSSS---SB-------C-------HHHHHHSCTTEEEEECSSS
T ss_pred             CCCcc---cc-------C-------HHHHhcCCCCeEEEEcCCC
Confidence            65321   10       1       1222333688999999854

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=96.35  E-value=0.14  Score=46.03  Aligned_cols=119  Identities=18%  Similarity=0.220  Sum_probs=69.1

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccc-------hHHHHHHHHHHhhcCCCceEEEc--CCccc--
Q 018760           35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADK-------LRGEMLDLQHAAAFLPRTKILAS--VDYAV--  102 (350)
Q Consensus        35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~-------l~~~~~dl~~~~~~~~~~~v~~t--~~~~a--  102 (350)
                      .+.+++.|+|| |.+|..++..|++.|.  +|++.|++.++       ++....++....   ........  +|.++  
T Consensus         4 l~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~   78 (274)
T 3e03_A            4 LSGKTLFITGASRGIGLAIALRAARDGA--NVAIAAKSAVANPKLPGTIHSAAAAVNAAG---GQGLALKCDIREEDQVR   78 (274)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCSCCTTSCCCHHHHHHHHHHHT---SEEEEEECCTTCHHHHH
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeccchhhhhhHHHHHHHHHHHHhcC---CeEEEEeCCCCCHHHHH
Confidence            34467889998 8999999999999995  89999998764       333333333221   11122211  12111  


Q ss_pred             ---------cCCCCEEEEecCCCcCc---cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcCCcch
Q 018760          103 ---------TAGSDLCIVTAGARQIA---GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVANPVDI  159 (350)
Q Consensus       103 ---------l~~aDiVIi~~g~~~~~---g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNP~~~  159 (350)
                               +...|++|.++|.....   ..+.   ...+.-|    ..+.+.+.+.|.+. +.+.||+++-....
T Consensus        79 ~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~  153 (274)
T 3e03_A           79 AAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQA-PNPHILTLAPPPSL  153 (274)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTS-SSCEEEECCCCCCC
T ss_pred             HHHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhc-CCceEEEECChHhc
Confidence                     23789999999864321   1121   2223334    34555566666553 34667777654433

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=96.35  E-value=0.0017  Score=60.11  Aligned_cols=113  Identities=19%  Similarity=0.224  Sum_probs=69.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc--cchHHHHHHHHHHhhcCCCceEEEc--CCc----cccCCCC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA--DKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAGSD  107 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~--~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~aD  107 (350)
                      .|||.|+|| |.+|++++..|+..+...+|+.+|++.  ...+.    +..... .....+...  +|.    +++.++|
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~----~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~d   77 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPAN----LKDLED-DPRYTFVKGDVADYELVKELVRKVD   77 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGG----GTTTTT-CTTEEEEECCTTCHHHHHHHHHTCS
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhH----Hhhhcc-CCceEEEEcCCCCHHHHHHHhhCCC
Confidence            478999998 999999999999886324899999864  22221    111100 112233222  122    2357899


Q ss_pred             EEEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          108 LCIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       108 iVIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +||.+++.....  .....+.+..|+.-...+++.+.+......+|.+|
T Consensus        78 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~S  126 (336)
T 2hun_A           78 GVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVS  126 (336)
T ss_dssp             EEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             EEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            999998754211  11234456678888888888887765434566655

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=96.34  E-value=0.0085  Score=54.77  Aligned_cols=110  Identities=12%  Similarity=0.106  Sum_probs=65.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g  114 (350)
                      +++||.|+|| |.+|++++..|+..|.  +|+.++++..........+..... .....+    -..++.++|+||.+++
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~----~~~Dl~~~d~vi~~a~   78 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGE--EVTVLDDLRVPPMIPPEGTGKFLE-KPVLEL----EERDLSDVRLVYHLAS   78 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--CEEEECCCSSCCSSCCTTSSEEEC-SCGGGC----CHHHHTTEEEEEECCC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcccccchhhhhhhcc-CCCeeE----EeCccccCCEEEECCc
Confidence            3579999999 9999999999999985  899999976521000000110000 000111    0124558999999987


Q ss_pred             CCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          115 ARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       115 ~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      .....  .....+.+. |+.-...+++.+.+....- +|.+|
T Consensus        79 ~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~-~v~~S  118 (321)
T 3vps_A           79 HKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPK-VVVGS  118 (321)
T ss_dssp             CCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCE-EEEEE
T ss_pred             cCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCe-EEEec
Confidence            54210  011122234 8888888888888776443 44444

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=96.34  E-value=0.016  Score=54.83  Aligned_cols=109  Identities=16%  Similarity=0.167  Sum_probs=69.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcC-CCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQD-FVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSD  107 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~-~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aD  107 (350)
                      ++|||.|+|| |.+|+.++..|+..+ .  +|+++|++.+....   .+..    .....+...  +|   . ++++++|
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~---~l~~----~~~v~~~~~Dl~d~~~l~~~~~~~d  101 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVN--QVHVVDNLLSAEKI---NVPD----HPAVRFSETSITDDALLASLQDEYD  101 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCS--EEEEECCCTTCCGG---GSCC----CTTEEEECSCTTCHHHHHHCCSCCS
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCc--eEEEEECCCCCchh---hccC----CCceEEEECCCCCHHHHHHHhhCCC
Confidence            4579999998 999999999999987 5  89999997654321   0100    012222211  12   2 3567999


Q ss_pred             EEEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEc
Q 018760          108 LCIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVA  154 (350)
Q Consensus       108 iVIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~t  154 (350)
                      +||.+++.....  .....+.+..|+.-...+++.+.+. ... .+|.+|
T Consensus       102 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~~V~~S  150 (377)
T 2q1s_A          102 YVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLK-KVVYSA  150 (377)
T ss_dssp             EEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCC-EEEEEE
T ss_pred             EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEeC
Confidence            999998754211  1133455667888888888888775 333 355554

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=96.33  E-value=0.0027  Score=60.59  Aligned_cols=74  Identities=19%  Similarity=0.269  Sum_probs=50.9

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-cccCCCCEEEE
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-AVTAGSDLCIV  111 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-~al~~aDiVIi  111 (350)
                      .+.++|+|+|+|.+|..++..+...|.  +|+++|+++++++.    +.....  .......+  .+. +.++++|+||.
T Consensus       164 l~~~~V~ViGaG~iG~~~a~~l~~~Ga--~V~~~d~~~~~~~~----~~~~~g--~~~~~~~~~~~~l~~~~~~~DvVi~  235 (369)
T 2eez_A          164 VAPASVVILGGGTVGTNAAKIALGMGA--QVTILDVNHKRLQY----LDDVFG--GRVITLTATEANIKKSVQHADLLIG  235 (369)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHH----HHHHTT--TSEEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEECCHHHHHH----HHHhcC--ceEEEecCCHHHHHHHHhCCCEEEE
Confidence            456899999999999999999998886  89999999877653    222111  11111111  122 45789999999


Q ss_pred             ecCCC
Q 018760          112 TAGAR  116 (350)
Q Consensus       112 ~~g~~  116 (350)
                      +++.+
T Consensus       236 ~~g~~  240 (369)
T 2eez_A          236 AVLVP  240 (369)
T ss_dssp             CCC--
T ss_pred             CCCCC
Confidence            98755

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=96.33  E-value=0.033  Score=49.74  Aligned_cols=113  Identities=17%  Similarity=0.159  Sum_probs=67.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccc-hHHHHHHHHHHhhcCCCceEEEc--CCccc----c------
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADK-LRGEMLDLQHAAAFLPRTKILAS--VDYAV----T------  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~-l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l------  103 (350)
                      ++|.|+|| |.+|..++..|++.|.  +|++.|+++++ ++....++.....  ........  +|.++    +      
T Consensus         5 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~   80 (260)
T 1x1t_A            5 KVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQHG--VKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHHT--SCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHhccC--CcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            57888898 8999999999999985  89999999876 6655555543211  11222211  12111    2      


Q ss_pred             -CCCCEEEEecCCCcC-c--cccH---HHHHHhhHH----HHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 -AGSDLCIVTAGARQI-A--GESR---LNLLQRNLS----LFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 -~~aDiVIi~~g~~~~-~--g~~r---~~~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                       ...|++|.++|.... +  ..+.   ...+.-|+.    +.+.+.+.+.+.. .+.||++|-
T Consensus        81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  142 (260)
T 1x1t_A           81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIAS  142 (260)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEECc
Confidence             368999999986432 1  1121   223333433    5566666665543 456777754

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=96.31  E-value=0.006  Score=57.37  Aligned_cols=67  Identities=18%  Similarity=0.254  Sum_probs=49.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      ....++|+|||+|.||..+|..+...|.  +|+.+|+++++ + ..   .. .    .  +... +. +.+++||+|+++
T Consensus       143 ~l~g~~vgIIG~G~iG~~vA~~l~~~G~--~V~~~d~~~~~-~-~~---~~-~----g--~~~~-~l~e~l~~aDiVil~  207 (333)
T 2d0i_A          143 SLYGKKVGILGMGAIGKAIARRLIPFGV--KLYYWSRHRKV-N-VE---KE-L----K--ARYM-DIDELLEKSDIVILA  207 (333)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHGGGTC--EEEEECSSCCH-H-HH---HH-H----T--EEEC-CHHHHHHHCSEEEEC
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCC--EEEEECCCcch-h-hh---hh-c----C--ceec-CHHHHHhhCCEEEEc
Confidence            4456799999999999999999988885  89999998864 2 11   11 1    1  2222 55 458899999999


Q ss_pred             cCC
Q 018760          113 AGA  115 (350)
Q Consensus       113 ~g~  115 (350)
                      ...
T Consensus       208 vp~  210 (333)
T 2d0i_A          208 LPL  210 (333)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            753

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=96.31  E-value=0.0025  Score=60.18  Aligned_cols=92  Identities=15%  Similarity=0.249  Sum_probs=59.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCC
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~  116 (350)
                      |||.|+|| |.+|+.++..|+..+. .+|+.+|++.+ .+    ++.                 +.++++|+||.+++..
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~-~~v~~~d~~~d-~~----~l~-----------------~~~~~~d~Vih~a~~~   57 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTD-HHIFEVHRQTK-EE----ELE-----------------SALLKADFIVHLAGVN   57 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCC-CEEEECCTTCC-HH----HHH-----------------HHHHHCSEEEECCCSB
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-CEEEEECCCCC-HH----HHH-----------------HHhccCCEEEECCcCC
Confidence            69999998 9999999999999884 28999998511 01    111                 1234688888887654


Q ss_pred             cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          117 QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       117 ~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ...  ...+....|+...+.+++.+++......+|.+|
T Consensus        58 ~~~--~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~S   93 (369)
T 3st7_A           58 RPE--HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSS   93 (369)
T ss_dssp             CTT--CSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEE
T ss_pred             CCC--CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeC
Confidence            311  111223346666677777777766553455554

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=96.31  E-value=0.04  Score=50.10  Aligned_cols=77  Identities=16%  Similarity=0.178  Sum_probs=52.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-c----------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-A----------  101 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-~----------  101 (350)
                      +.++|.|+|| |.+|..++..|+..|.  +|++.++++++++....++.....  ....+...  ++. +          
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~~~~v~~~~~~~~   86 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVTKGHEAVEKLKNSNH--ENVVFHQLDVTDPIATMSSLADFIK   86 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTC--CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--CceEEEEccCCCcHHHHHHHHHHHH
Confidence            3456888898 8999999999999985  899999999888766666654321  12222211  111 1          


Q ss_pred             -ccCCCCEEEEecCCC
Q 018760          102 -VTAGSDLCIVTAGAR  116 (350)
Q Consensus       102 -al~~aDiVIi~~g~~  116 (350)
                       .+...|++|.++|..
T Consensus        87 ~~~g~iD~lv~nAg~~  102 (311)
T 3o26_A           87 THFGKLDILVNNAGVA  102 (311)
T ss_dssp             HHHSSCCEEEECCCCC
T ss_pred             HhCCCCCEEEECCccc
Confidence             123789999999864

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=96.30  E-value=0.0024  Score=57.83  Aligned_cols=95  Identities=13%  Similarity=0.199  Sum_probs=63.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccC--CCCEEEEecC
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTA--GSDLCIVTAG  114 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~--~aDiVIi~~g  114 (350)
                      |||.|+|| |.+|++++..|+..|.  +|+.+++.+--+.. ...+.                 ++++  ++|+||.+++
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~D~~d-~~~~~-----------------~~~~~~~~d~vi~~a~   65 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEY--DIYPFDKKLLDITN-ISQVQ-----------------QVVQEIRPHIIIHCAA   65 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTE--EEEEECTTTSCTTC-HHHHH-----------------HHHHHHCCSEEEECCC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCC--EEEEecccccCCCC-HHHHH-----------------HHHHhcCCCEEEECCc
Confidence            58999998 9999999999999884  89999983311100 00111                 2233  6899999987


Q ss_pred             CCcCcc--ccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          115 ARQIAG--ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       115 ~~~~~g--~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ......  ....+....|+.-...+++.+.+...  .+|.+|
T Consensus        66 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S  105 (287)
T 3sc6_A           66 YTKVDQAEKERDLAYVINAIGARNVAVASQLVGA--KLVYIS  105 (287)
T ss_dssp             CCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             ccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            643211  23455667788888888888887654  355554

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=96.30  E-value=0.006  Score=53.89  Aligned_cols=105  Identities=14%  Similarity=0.130  Sum_probs=61.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHH-HHHHHHHHhhcCCCceEEEcCCcccc-CCCCEEEEecC
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRG-EMLDLQHAAAFLPRTKILASVDYAVT-AGSDLCIVTAG  114 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~-~~~dl~~~~~~~~~~~v~~t~~~~al-~~aDiVIi~~g  114 (350)
                      ++|.|+|| |.+|+.++..|+..|.  +|+++|+++++++. ...|+.+.....   ++     .+.+ .+.|+||.++|
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~D~~~~~~~~---~~-----~~~~~~~~d~vi~~Ag   71 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGH--TVIGIDRGQADIEADLSTPGGRETAVA---AV-----LDRCGGVLDGLVCCAG   71 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHHHHHH---HH-----HHHHTTCCSEEEECCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCChhHccccccCCcccHHHHH---HH-----HHHcCCCccEEEECCC
Confidence            47999999 9999999999999885  89999998765431 112333221100   00     0112 47999999988


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHh----hhhccCCCeEEEEEc
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIP----PLVKYSPDCILLIVA  154 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~----~i~~~~p~a~viv~t  154 (350)
                      ..... ......+..|+.-...+.+    .+.+.. .+.+|++|
T Consensus        72 ~~~~~-~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~s  113 (255)
T 2dkn_A           72 VGVTA-ANSGLVVAVNYFGVSALLDGLAEALSRGQ-QPAAVIVG  113 (255)
T ss_dssp             CCTTS-SCHHHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEEC
T ss_pred             CCCcc-hhHHHHHHHHhHHHHHHHHHHHHHhhhcC-CceEEEEe
Confidence            65311 2233344445444444444    443332 34566665

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=96.30  E-value=0.0065  Score=53.59  Aligned_cols=111  Identities=12%  Similarity=0.138  Sum_probs=64.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc---CC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT---AG  105 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al---~~  105 (350)
                      +.++|.|+|| |.+|..++..|++.|.  +|+++|+++++++....++       ...++...  +|.+    .+   ..
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~~   76 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKEC-------PGIEPVCVDLGDWDATEKALGGIGP   76 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHS-------TTCEEEECCTTCHHHHHHHHTTCCC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhc-------cCCCcEEecCCCHHHHHHHHHHcCC
Confidence            3468999999 9999999999999985  8999999887655322211       11222211  1211    22   24


Q ss_pred             CCEEEEecCCCcCc---cccH---HHHHHhhHH----HHHHHHhhhhccCCCeEEEEEcC
Q 018760          106 SDLCIVTAGARQIA---GESR---LNLLQRNLS----LFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       106 aDiVIi~~g~~~~~---g~~r---~~~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      .|+||.++|.....   ..+.   ...+..|+.    +.+.+.+.+.+....+.+|++|-
T Consensus        77 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS  136 (244)
T 1cyd_A           77 VDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSS  136 (244)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcc
Confidence            79999998854311   1111   223334443    34445555544343466777764

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.29  E-value=0.019  Score=56.03  Aligned_cols=76  Identities=16%  Similarity=0.102  Sum_probs=53.6

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccCC-CCEEEEe
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTAG-SDLCIVT  112 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~~-aDiVIi~  112 (350)
                      .+.+||.|||.|..|.+.|..|...|.  +|..+|.++.........|...     ..++....+.+ .+.+ +|+||.+
T Consensus         7 ~~~k~v~viG~G~sG~s~A~~l~~~G~--~V~~~D~~~~~~~~~~~~L~~~-----gi~~~~g~~~~~~~~~~~d~vv~s   79 (451)
T 3lk7_A            7 FENKKVLVLGLARSGEAAARLLAKLGA--IVTVNDGKPFDENPTAQSLLEE-----GIKVVCGSHPLELLDEDFCYMIKN   79 (451)
T ss_dssp             TTTCEEEEECCTTTHHHHHHHHHHTTC--EEEEEESSCGGGCHHHHHHHHT-----TCEEEESCCCGGGGGSCEEEEEEC
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCC--EEEEEeCCcccCChHHHHHHhC-----CCEEEECCChHHhhcCCCCEEEEC
Confidence            345799999999999999999999996  9999999764222222334432     34555444444 3466 9999999


Q ss_pred             cCCCc
Q 018760          113 AGARQ  117 (350)
Q Consensus       113 ~g~~~  117 (350)
                      .|.|.
T Consensus        80 pgi~~   84 (451)
T 3lk7_A           80 PGIPY   84 (451)
T ss_dssp             TTSCT
T ss_pred             CcCCC
Confidence            88764

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=96.29  E-value=0.024  Score=52.08  Aligned_cols=106  Identities=13%  Similarity=0.207  Sum_probs=67.3

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccC--CCC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTA--GSD  107 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~--~aD  107 (350)
                      ||||.|+|| |.+|+.++..|+..+.  +|+++|++......   .+.      ....+...  +|.    ++++  ++|
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~---~~~------~~~~~~~~D~~~~~~~~~~~~~~~~d   69 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGL--SVVVVDNLQTGHED---AIT------EGAKFYNGDLRDKAFLRDVFTQENIE   69 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCGG---GSC------TTSEEEECCTTCHHHHHHHHHHSCEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCcCchh---hcC------CCcEEEECCCCCHHHHHHHHhhcCCC
Confidence            468999998 9999999999999884  89999987543221   111      12222211  122    2355  899


Q ss_pred             EEEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          108 LCIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       108 iVIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +||.+++.....  .....+.+..|+.-...+++.+.+.... .+|.+|
T Consensus        70 ~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~S  117 (330)
T 2c20_A           70 AVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVD-KFIFSS  117 (330)
T ss_dssp             EEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred             EEEECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCC-EEEEeC
Confidence            999998754211  1123445666888888888887775433 355554

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=96.28  E-value=0.014  Score=52.08  Aligned_cols=110  Identities=14%  Similarity=0.140  Sum_probs=66.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T------  103 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l------  103 (350)
                      .+++.|+|| |.+|..++..|++.|.  +|+++|+++++++....++..      .......  ++.++    +      
T Consensus         5 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~   76 (254)
T 1hdc_A            5 GKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELGD------AARYQHLDVTIEEDWQRVVAYAREE   76 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTGG------GEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC------ceeEEEecCCCHHHHHHHHHHHHHH
Confidence            357999998 9999999999999985  899999998766543333210      1111111  12221    2      


Q ss_pred             -CCCCEEEEecCCCcC-c--cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 -AGSDLCIVTAGARQI-A--GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 -~~aDiVIi~~g~~~~-~--g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                       ...|++|.++|.... +  ..+.   ...+.-|    ....+.+.+.+++.. .+.||++|-
T Consensus        77 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  138 (254)
T 1hdc_A           77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISS  138 (254)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECc
Confidence             279999999886432 1  1121   2223334    334456666666543 456777654

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=96.28  E-value=0.024  Score=58.28  Aligned_cols=114  Identities=13%  Similarity=0.200  Sum_probs=70.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccC--CC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTA--GS  106 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~--~a  106 (350)
                      ++++|.|+|| |.+|++++..|++.+.  +|+++|++..........+.....  ....+...  ++.    ++++  ++
T Consensus        10 ~~~~ilVTGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~v~~v~~Dl~d~~~l~~~~~~~~~   85 (699)
T 1z45_A           10 TSKIVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLTK--HHIPFYEVDLCDRKGLEKVFKEYKI   85 (699)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHHT--SCCCEEECCTTCHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCcchHHHHHHHhhccC--CceEEEEcCCCCHHHHHHHHHhCCC
Confidence            4579999998 9999999999999884  999999876543222223332211  12222221  122    2345  79


Q ss_pred             CEEEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          107 DLCIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       107 DiVIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |+||.+++.....  .....+.+..|+.-...+++.+.+..... +|.+|
T Consensus        86 D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~-iV~~S  134 (699)
T 1z45_A           86 DSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSK-FVFSS  134 (699)
T ss_dssp             CEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCE-EEEEE
T ss_pred             CEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEC
Confidence            9999998754211  11234456678887788888877765433 44443

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=96.28  E-value=0.0061  Score=55.88  Aligned_cols=109  Identities=13%  Similarity=0.187  Sum_probs=64.8

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      |+||.|+|| |.+|+.++..|+..|  ..+++.+.+....+.    +.....+ ....+. ..+. ++++++|+||.+++
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g--~~v~~~~~~~~~~~~----~~~~~~~-~~~Dl~-~~~~~~~~~~~d~vih~a~   72 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSESN--EIVVIDNLSSGNEEF----VNEAARL-VKADLA-ADDIKDYLKGAEEVWHIAA   72 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTTS--CEEEECCCSSCCGGG----SCTTEEE-ECCCTT-TSCCHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCC--CEEEEEcCCCCChhh----cCCCcEE-EECcCC-hHHHHHHhcCCCEEEECCC
Confidence            358999998 999999999999988  344444444443321    1100000 011111 1122 45789999999987


Q ss_pred             CCcC--ccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          115 ARQI--AGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       115 ~~~~--~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      .+..  ........+..|+.-...+++.+.+.... .+|++|
T Consensus        73 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~S  113 (313)
T 3ehe_A           73 NPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS-RIVFTS  113 (313)
T ss_dssp             CCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEC
T ss_pred             CCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeC
Confidence            5421  12234556677888888888888776544 355554

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.28  E-value=0.0059  Score=58.87  Aligned_cols=41  Identities=22%  Similarity=0.244  Sum_probs=36.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      +.++.||+|||+|.+|...+..+...|.  +|..+|+++++++
T Consensus       187 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~  227 (405)
T 4dio_A          187 TVPAAKIFVMGAGVAGLQAIATARRLGA--VVSATDVRPAAKE  227 (405)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSTTHHH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEcCCHHHHH
Confidence            3467899999999999999999988886  8999999998776

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=96.27  E-value=0.029  Score=49.27  Aligned_cols=113  Identities=14%  Similarity=0.125  Sum_probs=65.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEE-EeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c------
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELAL-VDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T------  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L-~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l------  103 (350)
                      ++|.|+|| |.+|..++..|++.|.  +|++ +++++++++....++....   ........  ++.++    +      
T Consensus         2 k~vlVTGasggiG~~la~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   76 (244)
T 1edo_A            2 PVVVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAYG---GQAITFGGDVSKEADVEAMMKTAIDA   76 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHT---CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC---CcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            47889998 9999999999999985  8888 5788776665444554321   11222211  12211    2      


Q ss_pred             -CCCCEEEEecCCCcCc---ccc---HHHHHHhhHH----HHHHHHhhhhccCCCeEEEEEcCC
Q 018760          104 -AGSDLCIVTAGARQIA---GES---RLNLLQRNLS----LFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       104 -~~aDiVIi~~g~~~~~---g~~---r~~~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                       ...|+||.++|.....   ..+   -...+..|+.    +.+.+.+.+.+. ..+.+|++|-.
T Consensus        77 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~  139 (244)
T 1edo_A           77 WGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK-RKGRIINIASV  139 (244)
T ss_dssp             SSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCT
T ss_pred             cCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-CCCEEEEECCh
Confidence             2689999998865321   111   1223344433    344444444433 34567777643

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=96.27  E-value=0.0063  Score=58.83  Aligned_cols=96  Identities=15%  Similarity=0.222  Sum_probs=62.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      +...++|+|||.|.+|+.+|..+...|.  +|+.||+++....         .    .  +....+. +.++.||+|+++
T Consensus       142 el~gktlGiIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~---------~----~--~~~~~~l~ell~~aDvV~l~  204 (404)
T 1sc6_A          142 EARGKKLGIIGYGHIGTQLGILAESLGM--YVYFYDIENKLPL---------G----N--ATQVQHLSDLLNMSDVVSLH  204 (404)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCCCCC---------T----T--CEECSCHHHHHHHCSEEEEC
T ss_pred             ccCCCEEEEEeECHHHHHHHHHHHHCCC--EEEEEcCCchhcc---------C----C--ceecCCHHHHHhcCCEEEEc
Confidence            4566799999999999999999988885  9999999764310         0    1  1123355 568899999998


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC--Ccch
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN--PVDI  159 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN--P~~~  159 (350)
                      .....   +++. ++  |.       +.+....|.+++|+++-  ++|.
T Consensus       205 ~P~t~---~t~~-li--~~-------~~l~~mk~ga~lIN~aRg~~vd~  240 (404)
T 1sc6_A          205 VPENP---STKN-MM--GA-------KEISLMKPGSLLINASRGTVVDI  240 (404)
T ss_dssp             CCSST---TTTT-CB--CH-------HHHHHSCTTEEEEECSCSSSBCH
T ss_pred             cCCCh---HHHH-Hh--hH-------HHHhhcCCCeEEEECCCChHHhH
Confidence            64321   1110 00  11       12333468899999973  4553

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=96.27  E-value=0.022  Score=55.89  Aligned_cols=117  Identities=14%  Similarity=0.104  Sum_probs=71.5

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCC-CeEEEEeCCccchHHHHHHHHHHhh-------------cCCCceEEEcC
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFV-EELALVDAKADKLRGEMLDLQHAAA-------------FLPRTKILASV   98 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~-~ev~L~D~~~~~l~~~~~dl~~~~~-------------~~~~~~v~~t~   98 (350)
                      ..++++|.|+|| |.+|+.++..|++.+.. .+|++++++++...+ ...+.+...             ......+... 
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~-  147 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDA-RRRLEKTFDSGDPELLRHFKELAADRLEVVAG-  147 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHH-HHHHHGGGCSSCHHHHHHHHHHHTTTEEEEEC-
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHH-HHHHHHHHHhcchhhhhhhhhhccCceEEEEe-
Confidence            445789999998 99999999999988321 499999998764432 222222110             0122333322 


Q ss_pred             Cc-------------cccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760           99 DY-------------AVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus        99 ~~-------------~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |.             +.++++|+||.+++....  ....+.+..|+.-...+++.+.+.....+|.+-|
T Consensus       148 Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS  214 (478)
T 4dqv_A          148 DKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA--FPYHELFGPNVAGTAELIRIALTTKLKPFTYVST  214 (478)
T ss_dssp             CTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB--SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEE
T ss_pred             ECCCcccCCCHHHHHHHHcCCCEEEECccccCC--cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEee
Confidence            22             235689999999875432  1112234567777888888887765544443333

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=96.26  E-value=0.099  Score=46.89  Aligned_cols=111  Identities=20%  Similarity=0.190  Sum_probs=65.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc------cCCCCE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV------TAGSDL  108 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a------l~~aDi  108 (350)
                      +.+.|.|+ +.+|.+++..|++.|.  +|++.|++.+  +.....+....   ........  +|.++      ...-|+
T Consensus        10 KvalVTGas~GIG~aiA~~la~~Ga--~Vvi~~r~~~--~~~~~~~~~~g---~~~~~~~~Dv~d~~~v~~~~~~g~iDi   82 (247)
T 4hp8_A           10 RKALVTGANTGLGQAIAVGLAAAGA--EVVCAARRAP--DETLDIIAKDG---GNASALLIDFADPLAAKDSFTDAGFDI   82 (247)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCC--HHHHHHHHHTT---CCEEEEECCTTSTTTTTTSSTTTCCCE
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHcCC--EEEEEeCCcH--HHHHHHHHHhC---CcEEEEEccCCCHHHHHHHHHhCCCCE
Confidence            34556687 8999999999999995  8999999864  22233333321   12221111  12111      234699


Q ss_pred             EEEecCCCcC-c--cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          109 CIVTAGARQI-A--GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       109 VIi~~g~~~~-~--g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +|..+|.... +  ..+..+   .+.-|    .-..+..++.|.+....+-||+++-
T Consensus        83 LVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS  139 (247)
T 4hp8_A           83 LVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIAS  139 (247)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             EEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            9999886432 2  122222   22233    4456677787876666677888863

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.25  E-value=0.0056  Score=57.35  Aligned_cols=70  Identities=16%  Similarity=0.239  Sum_probs=46.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHH-hcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccC--CCCEEEE
Q 018760           36 RHTKISVIGTGNVGMAIAQTIL-TQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTA--GSDLCIV  111 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~-~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~--~aDiVIi  111 (350)
                      +++||+|||+|.+|...+..+. ..+-+.-+.++|+++++++.    +.....   ..++  .++++ .++  ++|+|++
T Consensus         7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~----~a~~~g---~~~~--~~~~~~~l~~~~~D~V~i   77 (346)
T 3cea_A            7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEW----AKNELG---VETT--YTNYKDMIDTENIDAIFI   77 (346)
T ss_dssp             CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHH----HHHTTC---CSEE--ESCHHHHHTTSCCSEEEE
T ss_pred             CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHH----HHHHhC---CCcc--cCCHHHHhcCCCCCEEEE
Confidence            4689999999999999888887 43322225688999887653    222211   1122  34664 454  7999999


Q ss_pred             ecC
Q 018760          112 TAG  114 (350)
Q Consensus       112 ~~g  114 (350)
                      +..
T Consensus        78 ~tp   80 (346)
T 3cea_A           78 VAP   80 (346)
T ss_dssp             CSC
T ss_pred             eCC
Confidence            964

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=96.25  E-value=0.029  Score=50.82  Aligned_cols=111  Identities=14%  Similarity=0.149  Sum_probs=68.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc-------
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT-------  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al-------  103 (350)
                      +++.|+|| |.+|..++..|++.|.  +|++.|+++++++....++..      .......  +|.+    .+       
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~------~~~~~~~Dv~d~~~v~~~~~~~~~~~  100 (272)
T 4dyv_A           29 KIAIVTGAGSGVGRAVAVALAGAGY--GVALAGRRLDALQETAAEIGD------DALCVPTDVTDPDSVRALFTATVEKF  100 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTS------CCEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC------CeEEEEecCCCHHHHHHHHHHHHHHc
Confidence            45677798 8999999999999995  899999998877654444421      1222211  1211    12       


Q ss_pred             CCCCEEEEecCCCcC--c--cccH---HHHHHhh----HHHHHHHHhhhhccC-CCeEEEEEcCC
Q 018760          104 AGSDLCIVTAGARQI--A--GESR---LNLLQRN----LSLFKAIIPPLVKYS-PDCILLIVANP  156 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~--~--g~~r---~~~~~~n----~~i~~~i~~~i~~~~-p~a~viv~tNP  156 (350)
                      ...|++|.++|....  +  ..+.   ...+.-|    ..+.+.+.+.+.+.. +.+.||++|--
T Consensus       101 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~  165 (272)
T 4dyv_A          101 GRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSI  165 (272)
T ss_dssp             SCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCS
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECch
Confidence            378999999986422  1  1121   2223334    345666777776654 35777777643

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=96.24  E-value=0.061  Score=48.65  Aligned_cols=113  Identities=17%  Similarity=0.182  Sum_probs=69.6

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T------  103 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l------  103 (350)
                      .+++.|+|| |.+|..++..|++.|.  +|++.|+++++++....++....   ........  +|.++    +      
T Consensus        33 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~~~~~~~~~~~~  107 (275)
T 4imr_A           33 GRTALVTGSSRGIGAAIAEGLAGAGA--HVILHGVKPGSTAAVQQRIIASG---GTAQELAGDLSEAGAGTDLIERAEAI  107 (275)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSTTTTHHHHHHHHHTT---CCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC---CeEEEEEecCCCHHHHHHHHHHHHHh
Confidence            356788898 8999999999999995  89999999988876666665422   12222211  11111    1      


Q ss_pred             CCCCEEEEecCCCcCc---cccHH---HHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 AGSDLCIVTAGARQIA---GESRL---NLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~---g~~r~---~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ...|++|..+|.....   ..+..   ..+.-|    ..+.+.+.+.+.+. ..+.||++|-
T Consensus       108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS  168 (275)
T 4imr_A          108 APVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVAR-KWGRVVSIGS  168 (275)
T ss_dssp             SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECC
Confidence            2689999998864321   11221   223333    34556666666554 3466777754

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.24  E-value=0.052  Score=48.67  Aligned_cols=112  Identities=16%  Similarity=0.201  Sum_probs=68.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc-----------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV-----------  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a-----------  102 (350)
                      .+++.|+|+ |.+|..++..|++.|.  +|++.|+++++++....++....   ........  +|.++           
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~   85 (264)
T 3ucx_A           11 DKVVVISGVGPALGTTLARRCAEQGA--DLVLAARTVERLEDVAKQVTDTG---RRALSVGTDITDDAQVAHLVDETMKA   85 (264)
T ss_dssp             TCEEEEESCCTTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHHhcC---CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            457888998 8999999999999995  89999999988876666665432   12222211  12111           


Q ss_pred             cCCCCEEEEecCCCc--Cc--cccHH---HHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 TAGSDLCIVTAGARQ--IA--GESRL---NLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 l~~aDiVIi~~g~~~--~~--g~~r~---~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +...|++|.++|...  .+  ..+..   ..+.-|    ..+.+.+.+.+.+..  +.||++|-
T Consensus        86 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS  147 (264)
T 3ucx_A           86 YGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK--GAVVNVNS  147 (264)
T ss_dssp             TSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT--CEEEEECC
T ss_pred             cCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CEEEEECc
Confidence            236899999987531  12  11221   223333    334555555555432  56777654

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=96.24  E-value=0.011  Score=56.50  Aligned_cols=42  Identities=17%  Similarity=0.177  Sum_probs=36.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHH
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRG   77 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~   77 (350)
                      +.++.||+|||+|.+|...+..+...|.  +|..+|+++++++.
T Consensus       181 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~  222 (381)
T 3p2y_A          181 TVKPASALVLGVGVAGLQALATAKRLGA--KTTGYDVRPEVAEQ  222 (381)
T ss_dssp             EECCCEEEEESCSHHHHHHHHHHHHHTC--EEEEECSSGGGHHH
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH
Confidence            4567899999999999999998888885  89999999988763

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=96.23  E-value=0.0063  Score=55.37  Aligned_cols=113  Identities=12%  Similarity=0.111  Sum_probs=67.4

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc---
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT---  103 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al---  103 (350)
                      ..+.+++.|+|| |.+|.+++..|++.|.  +|++.|+++++++....++.      ........  +|.+    .+   
T Consensus        24 ~l~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~   95 (277)
T 4dqx_A           24 DLNQRVCIVTGGGSGIGRATAELFAKNGA--YVVVADVNEDAAVRVANEIG------SKAFGVRVDVSSAKDAESMVEKT   95 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHC------TTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC------CceEEEEecCCCHHHHHHHHHHH
Confidence            334567888998 8999999999999995  89999999877664433321      11121111  1211    12   


Q ss_pred             ----CCCCEEEEecCCCcCc---cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 ----AGSDLCIVTAGARQIA---GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 ----~~aDiVIi~~g~~~~~---g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                          ...|++|.++|.....   ..+.   ...+.-|    ..+.+.+.+.+.+. ..+.||++|-
T Consensus        96 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS  160 (277)
T 4dqx_A           96 TAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRN-GGGSIINTTS  160 (277)
T ss_dssp             HHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT-TCEEEEEECC
T ss_pred             HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEECc
Confidence                3789999999864321   1121   2223334    33455566666553 3466777754

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=96.23  E-value=0.0027  Score=57.02  Aligned_cols=105  Identities=16%  Similarity=0.142  Sum_probs=66.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecCC
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAGA  115 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g~  115 (350)
                      +||.|+|| |.+|+.++..|+..+.  +|+++++++++...      ....+ ...++.-..+. +.++++|+||.+++.
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~------~~~~~-~~~Dl~d~~~~~~~~~~~d~vi~~a~~   73 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAH--EVRLSDIVDLGAAE------AHEEI-VACDLADAQAVHDLVKDCDGIIHLGGV   73 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEE--EEEECCSSCCCCCC------TTEEE-CCCCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCCCccccC------CCccE-EEccCCCHHHHHHHHcCCCEEEECCcC
Confidence            48999999 9999999999998884  89999998754210      00000 01111000012 357889999999876


Q ss_pred             CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ..  .......+..|+.-...+++.+.+.... .+|++|
T Consensus        74 ~~--~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~S  109 (267)
T 3ay3_A           74 SV--ERPWNDILQANIIGAYNLYEAARNLGKP-RIVFAS  109 (267)
T ss_dssp             CS--CCCHHHHHHHTHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             CC--CCCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEeC
Confidence            42  2233455667887778888877765433 355554

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=96.22  E-value=0.0071  Score=57.17  Aligned_cols=74  Identities=16%  Similarity=0.224  Sum_probs=47.4

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-cC--CCCEEEE
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-TA--GSDLCIV  111 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l~--~aDiVIi  111 (350)
                      .+++||+|||+|.+|..++..|...+-+.-+.++|+++++++.    +..........++  .+++++ ++  ++|+|++
T Consensus         4 ~~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~----~a~~~~~~~~~~~--~~~~~~ll~~~~~D~V~i   77 (362)
T 1ydw_A            4 ETQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKA----FATANNYPESTKI--HGSYESLLEDPEIDALYV   77 (362)
T ss_dssp             --CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHH----HHHHTTCCTTCEE--ESSHHHHHHCTTCCEEEE
T ss_pred             CCceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHH----HHHHhCCCCCCee--eCCHHHHhcCCCCCEEEE
Confidence            4568999999999999988888775433334689999876653    3322211111233  456654 44  6999999


Q ss_pred             ecC
Q 018760          112 TAG  114 (350)
Q Consensus       112 ~~g  114 (350)
                      +..
T Consensus        78 ~tp   80 (362)
T 1ydw_A           78 PLP   80 (362)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            963

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.21  E-value=0.0044  Score=57.62  Aligned_cols=66  Identities=18%  Similarity=0.317  Sum_probs=48.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      +...++|+|||.|.+|..++..+...|.  +|+.+|+++++ + .   ... .    ..+.  . +. +.+++||+|+++
T Consensus       139 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~d~~~~~-~-~---~~~-~----g~~~--~-~l~ell~~aDvV~l~  203 (307)
T 1wwk_A          139 ELEGKTIGIIGFGRIGYQVAKIANALGM--NILLYDPYPNE-E-R---AKE-V----NGKF--V-DLETLLKESDVVTIH  203 (307)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCCH-H-H---HHH-T----TCEE--C-CHHHHHHHCSEEEEC
T ss_pred             ccCCceEEEEccCHHHHHHHHHHHHCCC--EEEEECCCCCh-h-h---Hhh-c----Cccc--c-CHHHHHhhCCEEEEe
Confidence            4456799999999999999999988885  89999998764 2 1   111 1    1122  2 45 568899999999


Q ss_pred             cC
Q 018760          113 AG  114 (350)
Q Consensus       113 ~g  114 (350)
                      ..
T Consensus       204 ~p  205 (307)
T 1wwk_A          204 VP  205 (307)
T ss_dssp             CC
T ss_pred             cC
Confidence            64

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=96.19  E-value=0.045  Score=50.16  Aligned_cols=115  Identities=16%  Similarity=0.162  Sum_probs=68.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc-----------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA-----------  101 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~-----------  101 (350)
                      +.+++.|+|| |.+|..++..|++.|.  +|+++|+++++++....++.....  ........  +|.+           
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  115 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGA--NVAVAARSPRELSSVTAELGELGA--GNVIGVRLDVSDPGSCADAARTVVD  115 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHTTSSS--SCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhCC--CcEEEEEEeCCCHHHHHHHHHHHHH
Confidence            3456778898 8999999999999996  999999999888765555543210  12222211  1211           


Q ss_pred             ccCCCCEEEEecCCCcC-c--cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          102 VTAGSDLCIVTAGARQI-A--GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       102 al~~aDiVIi~~g~~~~-~--g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      .+...|++|..+|.... +  ..+.   ...+.-|    ..+.+.+.+.+.+... +.||++|-
T Consensus       116 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~iV~isS  178 (293)
T 3rih_A          116 AFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGR-GRVILTSS  178 (293)
T ss_dssp             HHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSS-CEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEEeC
Confidence            12367999999886422 1  1122   1223334    3344555555555443 45666653

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=96.19  E-value=0.0065  Score=57.64  Aligned_cols=94  Identities=12%  Similarity=0.162  Sum_probs=60.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      ....++|+|||.|.+|..+|..+...|.  +|+.+|++... +    .... .    ..+  ...+. +.+++||+|+++
T Consensus       157 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~-~----~~~~-~----g~~--~~~~l~ell~~aDiV~l~  222 (352)
T 3gg9_A          157 VLKGQTLGIFGYGKIGQLVAGYGRAFGM--NVLVWGRENSK-E----RARA-D----GFA--VAESKDALFEQSDVLSVH  222 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSHHHH-H----HHHH-T----TCE--ECSSHHHHHHHCSEEEEC
T ss_pred             cCCCCEEEEEeECHHHHHHHHHHHhCCC--EEEEECCCCCH-H----HHHh-c----Cce--EeCCHHHHHhhCCEEEEe
Confidence            3456799999999999999999988886  99999986421 1    1111 1    112  23355 568999999998


Q ss_pred             cCCCc-CccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          113 AGARQ-IAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       113 ~g~~~-~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ..... ..+.-       |       .+.+....|++++|+++.
T Consensus       223 ~Plt~~t~~li-------~-------~~~l~~mk~gailIN~aR  252 (352)
T 3gg9_A          223 LRLNDETRSII-------T-------VADLTRMKPTALFVNTSR  252 (352)
T ss_dssp             CCCSTTTTTCB-------C-------HHHHTTSCTTCEEEECSC
T ss_pred             ccCcHHHHHhh-------C-------HHHHhhCCCCcEEEECCC
Confidence            64221 11110       1       122344468999999974

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=96.18  E-value=0.023  Score=55.98  Aligned_cols=91  Identities=14%  Similarity=0.173  Sum_probs=62.1

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      ...++++|+|+|.+|..+|..|...|.  +|+++|+++.++.....     .    ...+  . +. +.++.+|+|+.+.
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA--~Viv~D~~~~~a~~Aa~-----~----g~dv--~-~lee~~~~aDvVi~at  328 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGA--RVIVTEIDPICALQATM-----E----GLQV--L-TLEDVVSEADIFVTTT  328 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHH-----T----TCEE--C-CGGGTTTTCSEEEECS
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHH-----h----CCcc--C-CHHHHHHhcCEEEeCC
Confidence            345689999999999999999999996  89999999866542111     1    1122  2 34 5688999999886


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      |...-  ..            .   ..+....+++++++++.+
T Consensus       329 G~~~v--l~------------~---e~l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          329 GNKDI--IM------------L---DHMKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             SCSCS--BC------------H---HHHTTSCTTEEEEESSST
T ss_pred             CChhh--hh------------H---HHHHhcCCCeEEEEcCCC
Confidence            54321  00            0   123334678999999876

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.17  E-value=0.0083  Score=56.49  Aligned_cols=94  Identities=10%  Similarity=0.093  Sum_probs=60.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      +...++|+|||.|.+|..+|..+...|.  +|+.+|++.++..     ... .    ..+.   .+. +.+++||+|+++
T Consensus       162 ~l~g~tvgIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~-----~~~-~----g~~~---~~l~ell~~aDvV~l~  226 (335)
T 2g76_A          162 ELNGKTLGILGLGRIGREVATRMQSFGM--KTIGYDPIISPEV-----SAS-F----GVQQ---LPLEEIWPLCDFITVH  226 (335)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC--EEEEECSSSCHHH-----HHH-T----TCEE---CCHHHHGGGCSEEEEC
T ss_pred             CCCcCEEEEEeECHHHHHHHHHHHHCCC--EEEEECCCcchhh-----hhh-c----Ccee---CCHHHHHhcCCEEEEe
Confidence            3456799999999999999999887774  8999999875311     111 1    1121   245 568999999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      .....   .++        .++.  .+.+....|++++|+++-
T Consensus       227 ~P~t~---~t~--------~li~--~~~l~~mk~gailIN~ar  256 (335)
T 2g76_A          227 TPLLP---STT--------GLLN--DNTFAQCKKGVRVVNCAR  256 (335)
T ss_dssp             CCCCT---TTT--------TSBC--HHHHTTSCTTEEEEECSC
T ss_pred             cCCCH---HHH--------HhhC--HHHHhhCCCCcEEEECCC
Confidence            64321   111        1110  122334468899999874

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.17  E-value=0.0042  Score=56.09  Aligned_cols=97  Identities=12%  Similarity=0.174  Sum_probs=63.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhc--CCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCCE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQ--DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSDL  108 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~--~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aDi  108 (350)
                      |||.|+|| |.+|++++..|+..  +.  +|++++++++++..    +...     ...+...  +|   . ++++++|+
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~----l~~~-----~~~~~~~D~~d~~~l~~~~~~~d~   69 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS--QIIAIVRNVEKAST----LADQ-----GVEVRHGDYNQPESLQKAFAGVSK   69 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTTHH----HHHT-----TCEEEECCTTCHHHHHHHTTTCSE
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC--eEEEEEcCHHHHhH----Hhhc-----CCeEEEeccCCHHHHHHHHhcCCE
Confidence            57999999 99999999999987  63  89999998876542    2221     1222221  12   2 35789999


Q ss_pred             EEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          109 CIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       109 VIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ||.+++...  +  .    ..|+.-.+.+++.+.+....- +|.+|
T Consensus        70 vi~~a~~~~--~--~----~~n~~~~~~l~~a~~~~~~~~-~v~~S  106 (287)
T 2jl1_A           70 LLFISGPHY--D--N----TLLIVQHANVVKAARDAGVKH-IAYTG  106 (287)
T ss_dssp             EEECCCCCS--C--H----HHHHHHHHHHHHHHHHTTCSE-EEEEE
T ss_pred             EEEcCCCCc--C--c----hHHHHHHHHHHHHHHHcCCCE-EEEEC
Confidence            999987531  1  1    235666667777776654433 44444

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=96.16  E-value=0.11  Score=48.70  Aligned_cols=117  Identities=17%  Similarity=0.191  Sum_probs=68.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccc-------hHHHHHHHHHHhhcCCCceEEEc--CCcc----
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADK-------LRGEMLDLQHAAAFLPRTKILAS--VDYA----  101 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~-------l~~~~~dl~~~~~~~~~~~v~~t--~~~~----  101 (350)
                      +.+++.|+|| |.+|..++..|++.|.  +|+++++++++       ++....++....   ........  +|.+    
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga--~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g---~~~~~~~~Dv~d~~~v~~  118 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGA--NIVIAAKTAQPHPKLLGTIYTAAEEIEAVG---GKALPCIVDVRDEQQISA  118 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHTT---CEEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCC--EEEEEECChhhhhhhHHHHHHHHHHHHhcC---CeEEEEEccCCCHHHHHH
Confidence            4457889998 8999999999999995  89999998765       333333443321   11111111  1211    


Q ss_pred             c-------cCCCCEEEEecCCCcCc---cccH---HHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcCCcc
Q 018760          102 V-------TAGSDLCIVTAGARQIA---GESR---LNLLQRNL----SLFKAIIPPLVKYSPDCILLIVANPVD  158 (350)
Q Consensus       102 a-------l~~aDiVIi~~g~~~~~---g~~r---~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tNP~~  158 (350)
                      .       +...|+||.++|.....   ..+.   ...+.-|+    .+.+.+.+.+.+. ..+.||++|-+..
T Consensus       119 ~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-~~g~IV~iSS~~~  191 (346)
T 3kvo_A          119 AVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKS-KVAHILNISPPLN  191 (346)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTC-SSCEEEEECCCCC
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC-CCCEEEEECCHHH
Confidence            1       23789999998864321   1121   22344453    3445555555543 3466778775543

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=96.16  E-value=0.011  Score=52.18  Aligned_cols=112  Identities=13%  Similarity=0.138  Sum_probs=65.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc---CC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT---AG  105 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al---~~  105 (350)
                      +.++|.|+|| |.+|..++..|+..|.  +|+++|+++++++....++.       ..++...  +|.+    .+   ..
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-------~~~~~~~D~~~~~~~~~~~~~~~~   76 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECP-------GIEPVCVDLGDWEATERALGSVGP   76 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHST-------TCEEEECCTTCHHHHHHHHTTCCC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC-------CCCEEEEeCCCHHHHHHHHHHcCC
Confidence            3458999999 9999999999999985  89999998876653222211       1222211  1221    12   35


Q ss_pred             CCEEEEecCCCcCc---ccc---HHHHHHhhHH----HHHHHHhhhhccCCCeEEEEEcCC
Q 018760          106 SDLCIVTAGARQIA---GES---RLNLLQRNLS----LFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       106 aDiVIi~~g~~~~~---g~~---r~~~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      .|+||.++|.....   ..+   -...+..|+.    +.+.+.+.+.+....+.+|++|-.
T Consensus        77 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~  137 (244)
T 3d3w_A           77 VDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQ  137 (244)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred             CCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCch
Confidence            79999998864321   111   1223344433    344444555443424667777643

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=96.15  E-value=0.039  Score=50.28  Aligned_cols=46  Identities=22%  Similarity=0.324  Sum_probs=38.7

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH   84 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~   84 (350)
                      .++|.|+|| |.+|..++..|++.|.  +|+++|+++++++....++..
T Consensus        18 ~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~   64 (303)
T 1yxm_A           18 GQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQA   64 (303)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh
Confidence            468999998 9999999999999985  899999998877765556654

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.15  E-value=0.0074  Score=56.67  Aligned_cols=70  Identities=11%  Similarity=0.136  Sum_probs=46.4

Q ss_pred             CCCCeEEEEcCChhHHH-HHHHHHhcCCCCeE-EEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-c--CCCCEE
Q 018760           35 KRHTKISVIGTGNVGMA-IAQTILTQDFVEEL-ALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-T--AGSDLC  109 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~-~a~~l~~~~~~~ev-~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l--~~aDiV  109 (350)
                      .+++||+|||+|.+|.. ++..+...+-+ +| .++|+++++++..    .+...   -.++  .+|+++ +  .+.|+|
T Consensus        21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~-~lvav~d~~~~~a~~~----a~~~g---~~~~--y~d~~ell~~~~iDaV   90 (350)
T 4had_A           21 QSMLRFGIISTAKIGRDNVVPAIQDAENC-VVTAIASRDLTRAREM----ADRFS---VPHA--FGSYEEMLASDVIDAV   90 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCSSE-EEEEEECSSHHHHHHH----HHHHT---CSEE--ESSHHHHHHCSSCSEE
T ss_pred             cCccEEEEEcChHHHHHHHHHHHHhCCCe-EEEEEECCCHHHHHHH----HHHcC---CCee--eCCHHHHhcCCCCCEE
Confidence            45689999999999975 56667665433 44 5899999877643    33221   1233  457754 4  468999


Q ss_pred             EEecC
Q 018760          110 IVTAG  114 (350)
Q Consensus       110 Ii~~g  114 (350)
                      +++..
T Consensus        91 ~I~tP   95 (350)
T 4had_A           91 YIPLP   95 (350)
T ss_dssp             EECSC
T ss_pred             EEeCC
Confidence            99864

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=96.14  E-value=0.0072  Score=57.18  Aligned_cols=70  Identities=24%  Similarity=0.295  Sum_probs=46.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHH-hcCCCCeE-EEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-cC--CCCEEE
Q 018760           36 RHTKISVIGTGNVGMAIAQTIL-TQDFVEEL-ALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-TA--GSDLCI  110 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~-~~~~~~ev-~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l~--~aDiVI  110 (350)
                      +++||+|||+|.+|...+..|. ..+-+ +| .++|+++++++..+    ....  ...++  .+++++ ++  +.|+|+
T Consensus        22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~-~lvav~d~~~~~~~~~a----~~~g--~~~~~--~~~~~~ll~~~~~D~V~   92 (357)
T 3ec7_A           22 MTLKAGIVGIGMIGSDHLRRLANTVSGV-EVVAVCDIVAGRAQAAL----DKYA--IEAKD--YNDYHDLINDKDVEVVI   92 (357)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTCTTE-EEEEEECSSTTHHHHHH----HHHT--CCCEE--ESSHHHHHHCTTCCEEE
T ss_pred             CeeeEEEECCcHHHHHHHHHHHhhCCCc-EEEEEEeCCHHHHHHHH----HHhC--CCCee--eCCHHHHhcCCCCCEEE
Confidence            3579999999999999998888 43322 54 48999998776432    2211  11233  456643 44  589999


Q ss_pred             EecC
Q 018760          111 VTAG  114 (350)
Q Consensus       111 i~~g  114 (350)
                      ++..
T Consensus        93 i~tp   96 (357)
T 3ec7_A           93 ITAS   96 (357)
T ss_dssp             ECSC
T ss_pred             EcCC
Confidence            9863

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.14  E-value=0.0028  Score=56.09  Aligned_cols=96  Identities=10%  Similarity=0.156  Sum_probs=59.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----c-ccCCCCE
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----A-VTAGSDL  108 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~-al~~aDi  108 (350)
                      ..++|.|+|+|.+|..++..|...+  . |+++|.++++++.    +.  .    ...+...  ++.    + .+++||.
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g--~-v~vid~~~~~~~~----~~--~----~~~~i~gd~~~~~~l~~a~i~~ad~   74 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSE--V-FVLAEDENVRKKV----LR--S----GANFVHGDPTRVSDLEKANVRGARA   74 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSE--E-EEEESCGGGHHHH----HH--T----TCEEEESCTTCHHHHHHTTCTTCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCC--e-EEEEECCHHHHHH----Hh--c----CCeEEEcCCCCHHHHHhcCcchhcE
Confidence            4568999999999999999998877  3 8999999886652    22  1    1223221  121    2 3789999


Q ss_pred             EEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCC-eEEEEEcCCcch
Q 018760          109 CIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPD-CILLIVANPVDI  159 (350)
Q Consensus       109 VIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~-a~viv~tNP~~~  159 (350)
                      ||++.+..           ..|..    ++..+++.+|+ -++.-+.||...
T Consensus        75 vi~~~~~d-----------~~n~~----~~~~a~~~~~~~~iia~~~~~~~~  111 (234)
T 2aef_A           75 VIVDLESD-----------SETIH----CILGIRKIDESVRIIAEAERYENI  111 (234)
T ss_dssp             EEECCSCH-----------HHHHH----HHHHHHHHCSSSEEEEECSSGGGH
T ss_pred             EEEcCCCc-----------HHHHH----HHHHHHHHCCCCeEEEEECCHhHH
Confidence            99985321           12322    23334455777 445555677654

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=96.14  E-value=0.018  Score=53.36  Aligned_cols=110  Identities=15%  Similarity=0.115  Sum_probs=65.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCC-----CCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----ccc
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDF-----VEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVT  103 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~-----~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al  103 (350)
                      +.|+|.|+|| |.+|++++..|+..|.     ..+|+++|++.+....       ..  .....+...  +|.    +++
T Consensus        13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~-------~~--~~~~~~~~~Dl~d~~~~~~~~   83 (342)
T 2hrz_A           13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA-------GF--SGAVDARAADLSAPGEAEKLV   83 (342)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT-------TC--CSEEEEEECCTTSTTHHHHHH
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc-------cc--CCceeEEEcCCCCHHHHHHHH
Confidence            4579999998 9999999999998871     0289999997654321       00  011222211  122    234


Q ss_pred             -CCCCEEEEecCCCcCc-cccHHHHHHhhHHHHHHHHhhhhccC----CCeEEEEEc
Q 018760          104 -AGSDLCIVTAGARQIA-GESRLNLLQRNLSLFKAIIPPLVKYS----PDCILLIVA  154 (350)
Q Consensus       104 -~~aDiVIi~~g~~~~~-g~~r~~~~~~n~~i~~~i~~~i~~~~----p~a~viv~t  154 (350)
                       .++|+||.+++..... .......+..|+.-...+.+.+.+..    +...+|++|
T Consensus        84 ~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~S  140 (342)
T 2hrz_A           84 EARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTS  140 (342)
T ss_dssp             HTCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred             hcCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeC
Confidence             4899999998754311 11233445557666666666666543    223455554

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=96.13  E-value=0.0066  Score=54.59  Aligned_cols=110  Identities=15%  Similarity=0.214  Sum_probs=66.2

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----ccC-----
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VTA-----  104 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al~-----  104 (350)
                      .++|.|+|| |.+|..++..|++.|.  +|++.|+++++++....++...      ......  +|.+    .++     
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~------~~~~~~D~~~~~~v~~~~~~~~~~   78 (260)
T 1nff_A            7 GKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELADA------ARYVHLDVTQPAQWKAAVDTAVTA   78 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGGG------EEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhcC------ceEEEecCCCHHHHHHHHHHHHHH
Confidence            357899998 9999999999999985  8999999987765433333211      111111  1211    233     


Q ss_pred             --CCCEEEEecCCCcCc---cccH---HHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760          105 --GSDLCIVTAGARQIA---GESR---LNLLQRNL----SLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       105 --~aDiVIi~~g~~~~~---g~~r---~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                        ..|+||.++|.....   ..+.   ...+.-|.    .+.+.+.+.+.+.. .+.+|++|-
T Consensus        79 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  140 (260)
T 1nff_A           79 FGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG-RGSIINISS  140 (260)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEee
Confidence              799999998864321   1121   22333343    33456666666543 456677654

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=96.13  E-value=0.057  Score=47.65  Aligned_cols=74  Identities=16%  Similarity=0.311  Sum_probs=50.9

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCC-ccchHHHHHHHHHHhhcCCCceEEEc--CCcc----ccC----
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAK-ADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VTA----  104 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~-~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al~----  104 (350)
                      .++|.|+|| |.+|..++..|++.|.  +|+++|++ +++++....++....   ....+...  +|.+    .++    
T Consensus         7 ~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~   81 (258)
T 3afn_B            7 GKRVLITGSSQGIGLATARLFARAGA--KVGLHGRKAPANIDETIASMRADG---GDAAFFAADLATSEACQQLVDEFVA   81 (258)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHHHHTT---CEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEECCCchhhHHHHHHHHHhcC---CceEEEECCCCCHHHHHHHHHHHHH
Confidence            357889998 9999999999999985  89999998 777765555554321   11222211  1221    222    


Q ss_pred             ---CCCEEEEecCC
Q 018760          105 ---GSDLCIVTAGA  115 (350)
Q Consensus       105 ---~aDiVIi~~g~  115 (350)
                         +.|+||.++|.
T Consensus        82 ~~g~id~vi~~Ag~   95 (258)
T 3afn_B           82 KFGGIDVLINNAGG   95 (258)
T ss_dssp             HHSSCSEEEECCCC
T ss_pred             HcCCCCEEEECCCC
Confidence               79999999885

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=96.12  E-value=0.032  Score=49.67  Aligned_cols=111  Identities=12%  Similarity=0.082  Sum_probs=65.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc--------ccCCCCE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA--------VTAGSDL  108 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~--------al~~aDi  108 (350)
                      +++.|+|| |.+|..++..|++.|.  +|+++|+++++++.... +....   ......-..+.+        .+...|+
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~-l~~~~---~~~~~~d~~~v~~~~~~~~~~~g~iD~   75 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEA-FAETY---PQLKPMSEQEPAELIEAVTSAYGQVDV   75 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHH-HHHHC---TTSEECCCCSHHHHHHHHHHHHSCCCE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH-HHhcC---CcEEEECHHHHHHHHHHHHHHhCCCCE
Confidence            35788898 8999999999999985  89999999887764332 43321   111111011111        1237899


Q ss_pred             EEEecCCC-c-Cc--cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          109 CIVTAGAR-Q-IA--GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       109 VIi~~g~~-~-~~--g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +|.++|.. . .+  ..+.   ...+.-|    ..+.+.+.+.+.+.. .+.||++|-
T Consensus        76 lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  132 (254)
T 1zmt_A           76 LVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITS  132 (254)
T ss_dssp             EEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             EEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECC
Confidence            99999865 2 11  1121   2223334    335555556655543 355667654

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.11  E-value=0.016  Score=54.09  Aligned_cols=75  Identities=12%  Similarity=0.180  Sum_probs=48.2

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccC--CCC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTA--GSD  107 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~--~aD  107 (350)
                      ++||.|+|| |.+|+.++..|+..+.  +|+++++++.........+.....  ....+...  +|.    ++++  ++|
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~l~~--~~v~~~~~Dl~d~~~l~~~~~~~~~d   85 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHR--PTYILARPGPRSPSKAKIFKALED--KGAIIVYGLINEQEAMEKILKEHEID   85 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTC--CEEEEECSSCCCHHHHHHHHHHHH--TTCEEEECCTTCHHHHHHHHHHTTCC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC--CEEEEECCCCCChhHHHHHHHHHh--CCcEEEEeecCCHHHHHHHHhhCCCC
Confidence            468999999 9999999999999884  899999976221111112222111  12333322  122    3467  999


Q ss_pred             EEEEecCC
Q 018760          108 LCIVTAGA  115 (350)
Q Consensus       108 iVIi~~g~  115 (350)
                      +||.+++.
T Consensus        86 ~Vi~~a~~   93 (346)
T 3i6i_A           86 IVVSTVGG   93 (346)
T ss_dssp             EEEECCCG
T ss_pred             EEEECCch
Confidence            99999875

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=96.11  E-value=0.022  Score=51.35  Aligned_cols=112  Identities=22%  Similarity=0.293  Sum_probs=66.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----------  102 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----------  102 (350)
                      +.+++.|+|| |.+|..++..|++.|.  +|++.|+++++++....++.      ....+...  +|.++          
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~~~   97 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGA--IVGLHGTREDKLKEIAADLG------KDVFVFSANLSDRKSIKQLAEVAER   97 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC------SSEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC------CceEEEEeecCCHHHHHHHHHHHHH
Confidence            3457888898 8999999999999995  89999999887764433221      12222211  12111          


Q ss_pred             -cCCCCEEEEecCCCcCc---cccH---HHHHHhhHH----HHHHHHhhhhccCCCeEEEEEcCC
Q 018760          103 -TAGSDLCIVTAGARQIA---GESR---LNLLQRNLS----LFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       103 -l~~aDiVIi~~g~~~~~---g~~r---~~~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                       +...|++|.++|.....   ..+.   ...+.-|+.    +.+.+.+.+.+.. .+.||++|--
T Consensus        98 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~Iv~isS~  161 (266)
T 3grp_A           98 EMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRR-YGRIINITSI  161 (266)
T ss_dssp             HHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCC
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcEEEEECCH
Confidence             23789999999864321   1111   222334433    3666666665543 4567776643

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.11  E-value=0.0032  Score=57.49  Aligned_cols=72  Identities=21%  Similarity=0.223  Sum_probs=49.2

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc-------cchHHHHHHHHHHhhcCCCceEEEc--CC---c-cc
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA-------DKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AV  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~-------~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~a  102 (350)
                      ++||.|+|| |.+|++++..|+..|.  +|+++++++       ++++. ..++..     ...++...  +|   . ++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~-~~~l~~-----~~v~~v~~D~~d~~~l~~~   73 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN--PTYALVRKTITAANPETKEEL-IDNYQS-----LGVILLEGDINDHETLVKA   73 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC--CEEEEECCSCCSSCHHHHHHH-HHHHHH-----TTCEEEECCTTCHHHHHHH
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC--cEEEEECCCcccCChHHHHHH-HHHHHh-----CCCEEEEeCCCCHHHHHHH
Confidence            468999999 9999999999999884  899999986       43331 122221     12233322  12   2 45


Q ss_pred             cCCCCEEEEecCCC
Q 018760          103 TAGSDLCIVTAGAR  116 (350)
Q Consensus       103 l~~aDiVIi~~g~~  116 (350)
                      ++++|+||.+++..
T Consensus        74 ~~~~d~vi~~a~~~   87 (307)
T 2gas_A           74 IKQVDIVICAAGRL   87 (307)
T ss_dssp             HTTCSEEEECSSSS
T ss_pred             HhCCCEEEECCccc
Confidence            78999999998754

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=96.11  E-value=0.0042  Score=56.30  Aligned_cols=96  Identities=16%  Similarity=0.183  Sum_probs=63.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccC--CCCEEEE
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTA--GSDLCIV  111 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~--~aDiVIi  111 (350)
                      .++||.|+|| |.+|+.++..|+..|.  +|+++++++-       |+.+..            +. ++++  ++|+||.
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~-------Dl~d~~------------~~~~~~~~~~~d~vih   69 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNV--EVIPTDVQDL-------DITNVL------------AVNKFFNEKKPNVVIN   69 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTTC-------CTTCHH------------HHHHHHHHHCCSEEEE
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCC--eEEeccCccC-------CCCCHH------------HHHHHHHhcCCCEEEE
Confidence            3579999999 9999999999999884  8999988631       111100            11 2233  7899999


Q ss_pred             ecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          112 TAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       112 ~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +++.....  .....+.+..|+.-...+++.+.+...  .+|.+|
T Consensus        70 ~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~--~iv~~S  112 (292)
T 1vl0_A           70 CAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA--EIVQIS  112 (292)
T ss_dssp             CCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             CCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEec
Confidence            98754211  123345566677777788887777653  455554

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=96.11  E-value=0.007  Score=54.94  Aligned_cols=97  Identities=14%  Similarity=0.200  Sum_probs=63.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCC--CCEEEEec
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAG--SDLCIVTA  113 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~--aDiVIi~~  113 (350)
                      |||.|+|| |.+|++++..|+ .+  .+|+.++++++...+   |+.+            ..+. +++++  +|+||.++
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g--~~V~~~~r~~~~~~~---D~~d------------~~~~~~~~~~~~~d~vih~a   62 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PV--GNLIALDVHSKEFCG---DFSN------------PKGVAETVRKLRPDVIVNAA   62 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TT--SEEEEECTTCSSSCC---CTTC------------HHHHHHHHHHHCCSEEEECC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cC--CeEEEeccccccccc---cCCC------------HHHHHHHHHhcCCCEEEECc
Confidence            68999999 999999999988 67  499999987631110   1110            0011 23444  99999998


Q ss_pred             CCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          114 GARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       114 g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +.....  .....+.+..|+.-...+++.+.+...  .+|.+|
T Consensus        63 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  103 (299)
T 1n2s_A           63 AHTAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYS  103 (299)
T ss_dssp             CCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEE
T ss_pred             ccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Confidence            754311  123445566788888888888877643  455554

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=96.10  E-value=0.16  Score=44.96  Aligned_cols=113  Identities=14%  Similarity=0.231  Sum_probs=64.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc----cc--------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY----AV--------  102 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~----~a--------  102 (350)
                      +.++|.|+|| |.+|..++..|++.|. ..|+++|++++. + ...++..... .....+.. .|.    ++        
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~~v~~~~r~~~~-~-~~~~l~~~~~-~~~~~~~~-~D~~~~~~~~~~~~~~~   78 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVENP-T-ALAELKAINP-KVNITFHT-YDVTVPVAESKKLLKKI   78 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSCCH-H-HHHHHHHHCT-TSEEEEEE-CCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEecCchH-H-HHHHHHHhCC-CceEEEEE-EecCCChHHHHHHHHHH
Confidence            3468999998 9999999999999985 239999998742 1 2233433211 01112221 122    11        


Q ss_pred             ---cCCCCEEEEecCCCcCccccHHHHHHhh----HHHHHHHHhhhhccC--CCeEEEEEcC
Q 018760          103 ---TAGSDLCIVTAGARQIAGESRLNLLQRN----LSLFKAIIPPLVKYS--PDCILLIVAN  155 (350)
Q Consensus       103 ---l~~aDiVIi~~g~~~~~g~~r~~~~~~n----~~i~~~i~~~i~~~~--p~a~viv~tN  155 (350)
                         +...|+||.++|....  ..-...+..|    ..+.+.+.+.+.+..  +.+.+|++|-
T Consensus        79 ~~~~g~id~lv~~Ag~~~~--~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS  138 (254)
T 1sby_A           79 FDQLKTVDILINGAGILDD--HQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICS  138 (254)
T ss_dssp             HHHHSCCCEEEECCCCCCT--TCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             HHhcCCCCEEEECCccCCH--HHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECc
Confidence               1378999999986421  2222333334    344555555554432  3566777764

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=96.10  E-value=0.059  Score=48.42  Aligned_cols=116  Identities=11%  Similarity=0.127  Sum_probs=66.5

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc-cchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc--
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA-DKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT--  103 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~-~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al--  103 (350)
                      ..+.++|.|+|| |.+|..++..|++.|.  +|++.+++. +.++.....+....   ....+...  ++.+    .+  
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~  100 (271)
T 4iin_A           26 QFTGKNVLITGASKGIGAEIAKTLASMGL--KVWINYRSNAEVADALKNELEEKG---YKAAVIKFDAASESDFIEAIQT  100 (271)
T ss_dssp             CCSCCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC---CceEEEECCCCCHHHHHHHHHH
Confidence            334567888998 8999999999999996  899999954 44443333343221   12233221  1111    12  


Q ss_pred             -----CCCCEEEEecCCCcCc---cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 -----AGSDLCIVTAGARQIA---GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 -----~~aDiVIi~~g~~~~~---g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                           ...|++|.++|.....   ..+.   ...+..|    ..+.+.+.+.+.+.. .+.||++|-
T Consensus       101 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS  166 (271)
T 4iin_A          101 IVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSR-FGSVVNVAS  166 (271)
T ss_dssp             HHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcC-CCEEEEEec
Confidence                 3789999999864321   1121   2223334    334555566655543 355666653

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=96.10  E-value=0.02  Score=56.57  Aligned_cols=115  Identities=11%  Similarity=0.119  Sum_probs=67.3

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH---HHHHHHHHH------hhcCCCceEEEcCCc---
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR---GEMLDLQHA------AAFLPRTKILASVDY---  100 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~---~~~~dl~~~------~~~~~~~~v~~t~~~---  100 (350)
                      ..++++|.|+|| |.+|+.++..|...+  .+|+++++++....   .....+...      ........+... |.   
T Consensus       147 ~~~~~~VLVTGatG~iG~~l~~~L~~~g--~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~-Dl~d~  223 (508)
T 4f6l_B          147 HRPLGNTLLTGATGFLGAYLIEALQGYS--HRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVG-DFECM  223 (508)
T ss_dssp             BCCCEEEEESCTTSHHHHHHHHHTBTTE--EEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEE-BTTBC
T ss_pred             cCCCCeEEEECCccchHHHHHHHHHhcC--CEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEec-CCccc
Confidence            344679999999 999999999996666  48999999876332   222222211      001123343322 32   


Q ss_pred             ---cccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          101 ---AVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       101 ---~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                         ....++|+||.+++... ......++...|+.-.+.+++.+.+ .. ..++.+|
T Consensus       224 ~~l~~~~~~D~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~-~~-~~~v~iS  277 (508)
T 4f6l_B          224 DDVVLPENMDTIIHAGARTD-HFGDDDEFEKVNVQGTVDVIRLAQQ-HH-ARLIYVS  277 (508)
T ss_dssp             SSCCCSSCCSEEEECCCC---------CCHHHHHHHHHHHHHHHHT-TT-CEEEEEE
T ss_pred             ccCCCccCCCEEEECCceec-CCCCHHHHhhhHHHHHHHHHHHHHh-CC-CcEEEeC
Confidence               14578999999987542 1112233345578888888887777 32 3344443

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=96.10  E-value=0.039  Score=49.86  Aligned_cols=113  Identities=9%  Similarity=0.145  Sum_probs=69.1

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT------  103 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al------  103 (350)
                      .+++.|+|| |.+|..++..|++.|.  +|++.|+++++++....++....   ........  +|.+    .+      
T Consensus        26 gk~~lVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~  100 (271)
T 4ibo_A           26 GRTALVTGSSRGLGRAMAEGLAVAGA--RILINGTDPSRVAQTVQEFRNVG---HDAEAVAFDVTSESEIIEAFARLDEQ  100 (271)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTT---CCEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            356778898 8999999999999995  89999999988876666665422   11111111  1211    12      


Q ss_pred             -CCCCEEEEecCCCcCc---cccHH---HHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 -AGSDLCIVTAGARQIA---GESRL---NLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 -~~aDiVIi~~g~~~~~---g~~r~---~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                       ...|++|.++|.....   ..+..   ..+.-|    ..+.+...+.+.+.. .+.||+++-
T Consensus       101 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iV~isS  162 (271)
T 4ibo_A          101 GIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRG-YGKIVNIGS  162 (271)
T ss_dssp             TCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence             2689999999864321   11221   223334    345555566665543 356777654

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=96.09  E-value=0.013  Score=55.69  Aligned_cols=67  Identities=19%  Similarity=0.256  Sum_probs=47.5

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcccc-CCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVT-AGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al-~~aDiVIi~~  113 (350)
                      .+.++|+|+|+|+||+.++..|...|.  +|+++|+++++++..+..+        ..+..  +..+.+ .+||+++.++
T Consensus       171 L~GktV~V~G~G~VG~~~A~~L~~~Ga--kVvv~D~~~~~l~~~a~~~--------ga~~v--~~~~ll~~~~DIvip~a  238 (364)
T 1leh_A          171 LEGLAVSVQGLGNVAKALCKKLNTEGA--KLVVTDVNKAAVSAAVAEE--------GADAV--APNAIYGVTCDIFAPCA  238 (364)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHH--------CCEEC--CGGGTTTCCCSEEEECS
T ss_pred             CCcCEEEEECchHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHc--------CCEEE--ChHHHhccCCcEeeccc
Confidence            345689999999999999999999986  8999999987665433221        11221  111223 4899999885

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=96.09  E-value=0.014  Score=56.91  Aligned_cols=73  Identities=15%  Similarity=0.288  Sum_probs=50.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc-------------------cchHHHHHHHHHHhhcCCCceEEEc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA-------------------DKLRGEMLDLQHAAAFLPRTKILAS   97 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~v~~t   97 (350)
                      ..||+|||+|.+|+.++..|+..|+ ++|+|+|-+.                   .|++..+..+....   +..++...
T Consensus        40 ~~~VlvvG~GGlGs~va~~La~aGv-g~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~ln---p~v~v~~~  115 (434)
T 1tt5_B           40 TCKVLVIGAGGLGCELLKNLALSGF-RQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRV---PNCNVVPH  115 (434)
T ss_dssp             TCCEEEECSSTHHHHHHHHHHHTTC-CCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHS---TTCCCEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCC-CEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhC---CCCEEEEE
Confidence            4699999999999999999999997 6999999653                   23443344444433   33333322


Q ss_pred             C------CccccCCCCEEEEec
Q 018760           98 V------DYAVTAGSDLCIVTA  113 (350)
Q Consensus        98 ~------~~~al~~aDiVIi~~  113 (350)
                      .      +.+.++++|+||.+.
T Consensus       116 ~~~i~~~~~~~~~~~DlVi~~~  137 (434)
T 1tt5_B          116 FNKIQDFNDTFYRQFHIIVCGL  137 (434)
T ss_dssp             ESCGGGBCHHHHTTCSEEEECC
T ss_pred             ecccchhhHHHhcCCCEEEECC
Confidence            1      123478999999984

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=96.09  E-value=0.011  Score=55.03  Aligned_cols=114  Identities=16%  Similarity=0.161  Sum_probs=66.7

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc--chHHHHHHHHHHhhcCCCceEEEc--CCc----cccCC
Q 018760           35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD--KLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAG  105 (350)
Q Consensus        35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~--~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~  105 (350)
                      .++|||.|+|| |.+|+.++..|+..|...+|+..|+...  ...    .+..... .....+...  +|.    +++++
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~----~l~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~   96 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLN----NVKSIQD-HPNYYFVKGEIQNGELLEHVIKE   96 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGG----GGTTTTT-CTTEEEEECCTTCHHHHHHHHHH
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchh----hhhhhcc-CCCeEEEEcCCCCHHHHHHHHhh
Confidence            45679999999 9999999999999884337888887541  111    1211110 012333322  121    23555


Q ss_pred             --CCEEEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          106 --SDLCIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       106 --aDiVIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                        +|+||.+++.....  .....+.+..|+.-...+++.+.+....- +|.+|
T Consensus        97 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~v~~S  148 (346)
T 4egb_A           97 RDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIK-LVQVS  148 (346)
T ss_dssp             HTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSE-EEEEE
T ss_pred             cCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCE-EEEeC
Confidence              99999998754211  12233456678777888888888775443 44444

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=96.09  E-value=0.019  Score=50.51  Aligned_cols=66  Identities=20%  Similarity=0.255  Sum_probs=42.2

Q ss_pred             CCeEEEEcCChhHHHHHHHH-H-hcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccCCCCEEEEec
Q 018760           37 HTKISVIGTGNVGMAIAQTI-L-TQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTAGSDLCIVTA  113 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l-~-~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~~aDiVIi~~  113 (350)
                      .++|+|||||.+|..++..+ . ..+ +.-+.++|.|+++....      .    ....+...++.+ .+++.|+|++|.
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~~~~g-~~iVg~~D~dp~k~g~~------i----~gv~V~~~~dl~eli~~~D~ViIAv  153 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFTKNNN-TKISMAFDINESKIGTE------V----GGVPVYNLDDLEQHVKDESVAILTV  153 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC-------CCEEEEEESCTTTTTCE------E----TTEEEEEGGGHHHHCSSCCEEEECS
T ss_pred             CCEEEEEccCHHHHHHHHHHhcccCC-cEEEEEEeCCHHHHHhH------h----cCCeeechhhHHHHHHhCCEEEEec
Confidence            36899999999999999842 2 223 34577899999866420      1    123555555654 355559999995

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=96.08  E-value=0.0069  Score=54.41  Aligned_cols=58  Identities=19%  Similarity=0.256  Sum_probs=41.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEE-EEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEe
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELA-LVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVT  112 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~-L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~  112 (350)
                      +|||+|+|+|.||+.++..+.+.+-  +|+ .+|++++.         .   .  ...  .++|++++.++|+||-.
T Consensus         3 MmkI~ViGaGrMG~~i~~~l~~~~~--eLva~~d~~~~~---------~---~--gv~--v~~dl~~l~~~DVvIDf   61 (243)
T 3qy9_A            3 SMKILLIGYGAMNQRVARLAEEKGH--EIVGVIENTPKA---------T---T--PYQ--QYQHIADVKGADVAIDF   61 (243)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC--EEEEEECSSCC--------------C--CSC--BCSCTTTCTTCSEEEEC
T ss_pred             ceEEEEECcCHHHHHHHHHHHhCCC--EEEEEEecCccc---------c---C--CCc--eeCCHHHHhCCCEEEEe
Confidence            5899999999999999999988874  655 48887652         0   1  122  24566543389998854

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=96.08  E-value=0.062  Score=48.01  Aligned_cols=116  Identities=12%  Similarity=0.066  Sum_probs=64.3

Q ss_pred             CCCeEEEEcC-Ch--hHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c---
Q 018760           36 RHTKISVIGT-GN--VGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T---  103 (350)
Q Consensus        36 ~~~KI~IIGA-G~--vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l---  103 (350)
                      +.+++.|+|| |.  +|..++..|++.|.  +|++.|++++..+ ...++...... ....+...  +|.++    +   
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~-~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~   81 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA--RLIFTYAGERLEK-SVHELAGTLDR-NDSIILPCDVTNDAEIETCFASI   81 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHH-HHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEecCchHHHH-HHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHH
Confidence            3457889998 66  99999999999995  8999999865444 23333322110 12222221  12111    1   


Q ss_pred             ----CCCCEEEEecCCCcC-----c--cccH---HHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcC
Q 018760          104 ----AGSDLCIVTAGARQI-----A--GESR---LNLLQRNLSLFKAIIPPLVKY-SPDCILLIVAN  155 (350)
Q Consensus       104 ----~~aDiVIi~~g~~~~-----~--g~~r---~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN  155 (350)
                          ...|++|.++|....     +  ..+.   ...+.-|..-...+.+.+..+ .+.+.||++|-
T Consensus        82 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  148 (266)
T 3oig_A           82 KEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY  148 (266)
T ss_dssp             HHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred             HHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence                267999999886431     1  1122   223334443333333333332 23567777764

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=96.08  E-value=0.0043  Score=58.26  Aligned_cols=68  Identities=26%  Similarity=0.346  Sum_probs=46.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeE-EEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccC--CCCEEEEe
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEEL-ALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTA--GSDLCIVT  112 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev-~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~--~aDiVIi~  112 (350)
                      ++||+|||+|.+|...+..|...+-+ +| .++|+++++++..    .....   ..++  .++++ .++  ++|+|+++
T Consensus         2 ~~rvgiIG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~~----~~~~~---~~~~--~~~~~~ll~~~~~D~V~i~   71 (344)
T 3ezy_A            2 SLRIGVIGLGRIGTIHAENLKMIDDA-ILYAISDVREDRLREM----KEKLG---VEKA--YKDPHELIEDPNVDAVLVC   71 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHGGGSTTE-EEEEEECSCHHHHHHH----HHHHT---CSEE--ESSHHHHHHCTTCCEEEEC
T ss_pred             eeEEEEEcCCHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHH----HHHhC---CCce--eCCHHHHhcCCCCCEEEEc
Confidence            47999999999999998888775432 54 4789998876642    22221   1123  34664 355  89999999


Q ss_pred             cC
Q 018760          113 AG  114 (350)
Q Consensus       113 ~g  114 (350)
                      ..
T Consensus        72 tp   73 (344)
T 3ezy_A           72 SS   73 (344)
T ss_dssp             SC
T ss_pred             CC
Confidence            63

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=96.06  E-value=0.041  Score=44.88  Aligned_cols=109  Identities=14%  Similarity=0.119  Sum_probs=63.2

Q ss_pred             CCeEEEEcC----ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcccc-CCCCEEEE
Q 018760           37 HTKISVIGT----GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVT-AGSDLCIV  111 (350)
Q Consensus        37 ~~KI~IIGA----G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al-~~aDiVIi  111 (350)
                      +.+|+|||+    |++|..++..|...|+  +  ++++|+.+...   ++   .    .  +....+.+++ ...|++++
T Consensus        13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~--~--v~~vnp~~~~~---~i---~----G--~~~~~sl~el~~~vDlavi   76 (140)
T 1iuk_A           13 AKTIAVLGAHKDPSRPAHYVPRYLREQGY--R--VLPVNPRFQGE---EL---F----G--EEAVASLLDLKEPVDILDV   76 (140)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTC--E--EEEECGGGTTS---EE---T----T--EECBSSGGGCCSCCSEEEE
T ss_pred             CCEEEEECCCCCCCChHHHHHHHHHHCCC--E--EEEeCCCcccC---cC---C----C--EEecCCHHHCCCCCCEEEE
Confidence            458999999    7999999999999886  4  77777764211   01   1    1  2222345443 46899999


Q ss_pred             ecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCC
Q 018760          112 TAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTN  181 (350)
Q Consensus       112 ~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~  181 (350)
                      +..                .+.+.++++++.+....++++..+-...-+...+ +..|+   +++|=.|.
T Consensus        77 ~vp----------------~~~~~~v~~~~~~~gi~~i~~~~g~~~~~~~~~a-~~~Gi---r~vgpnc~  126 (140)
T 1iuk_A           77 FRP----------------PSALMDHLPEVLALRPGLVWLQSGIRHPEFEKAL-KEAGI---PVVADRCL  126 (140)
T ss_dssp             CSC----------------HHHHTTTHHHHHHHCCSCEEECTTCCCHHHHHHH-HHTTC---CEEESCCH
T ss_pred             EeC----------------HHHHHHHHHHHHHcCCCEEEEcCCcCHHHHHHHH-HHcCC---EEEcCCcc
Confidence            952                2333344444444455565443333333333333 34565   78775453

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=96.05  E-value=0.0059  Score=57.04  Aligned_cols=65  Identities=15%  Similarity=0.334  Sum_probs=46.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-cCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-TAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l~~aDiVIi~~g  114 (350)
                      +++||+|||+|+||..++..+...+-..-+.++|+++++ +     +.    +    .+..++|+++ +.++|+||++..
T Consensus         2 ~~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~-~-----~~----~----gv~~~~d~~~ll~~~DvViiatp   67 (320)
T 1f06_A            2 TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL-D-----TK----T----PVFDVADVDKHADDVDVLFLCMG   67 (320)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC-S-----SS----S----CEEEGGGGGGTTTTCSEEEECSC
T ss_pred             CCCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH-h-----hc----C----CCceeCCHHHHhcCCCEEEEcCC
Confidence            357999999999999999888876433335689998665 2     11    1    2444566655 478999999963

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=96.05  E-value=0.0072  Score=56.72  Aligned_cols=69  Identities=22%  Similarity=0.240  Sum_probs=46.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHH-hcCCCCeE-EEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-cC--CCCEEEE
Q 018760           37 HTKISVIGTGNVGMAIAQTIL-TQDFVEEL-ALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-TA--GSDLCIV  111 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~-~~~~~~ev-~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l~--~aDiVIi  111 (350)
                      ++||+|||+|.+|...+..+. ..+-+ +| .++|+++++++.    +.....  ...+  ..+++++ ++  ++|+|++
T Consensus         2 ~~rigiIG~G~~g~~~~~~l~~~~~~~-~l~av~d~~~~~~~~----~~~~~g--~~~~--~~~~~~~ll~~~~~D~V~i   72 (344)
T 3mz0_A            2 SLRIGVIGTGAIGKEHINRITNKLSGA-EIVAVTDVNQEAAQK----VVEQYQ--LNAT--VYPNDDSLLADENVDAVLV   72 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCSSE-EEEEEECSSHHHHHH----HHHHTT--CCCE--EESSHHHHHHCTTCCEEEE
T ss_pred             eEEEEEECccHHHHHHHHHHHhhCCCc-EEEEEEcCCHHHHHH----HHHHhC--CCCe--eeCCHHHHhcCCCCCEEEE
Confidence            469999999999999998888 43322 54 488999887663    332221  1123  3457643 44  4899999


Q ss_pred             ecC
Q 018760          112 TAG  114 (350)
Q Consensus       112 ~~g  114 (350)
                      +..
T Consensus        73 ~tp   75 (344)
T 3mz0_A           73 TSW   75 (344)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            863

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=96.04  E-value=0.058  Score=48.80  Aligned_cols=115  Identities=9%  Similarity=0.039  Sum_probs=64.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccc-hHHHHHHHHHHhhcCCCceEEEc--CCccc---------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADK-LRGEMLDLQHAAAFLPRTKILAS--VDYAV---------  102 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~-l~~~~~dl~~~~~~~~~~~v~~t--~~~~a---------  102 (350)
                      +.+++.|+|| |.+|..++..|++.|.  +|++.|++.+. ++....++....   ........  ++.++         
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~  102 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG---SDAACVKANVGVVEDIVRMFEEAV  102 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHHhC---CCeEEEEcCCCCHHHHHHHHHHHH
Confidence            3457888898 9999999999999985  89999998753 333333343211   12222211  11111         


Q ss_pred             --cCCCCEEEEecCCCcCc---cccH---HHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcC
Q 018760          103 --TAGSDLCIVTAGARQIA---GESR---LNLLQRNLSLFKAIIPPLVKY-SPDCILLIVAN  155 (350)
Q Consensus       103 --l~~aDiVIi~~g~~~~~---g~~r---~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN  155 (350)
                        +...|++|.++|.....   ..+.   ...+.-|+.-...+.+.+.++ ...+.||++|-
T Consensus       103 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  164 (283)
T 1g0o_A          103 KIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS  164 (283)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred             HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence              23689999998864321   1121   223444544333333333332 23456777653

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=96.04  E-value=0.051  Score=48.33  Aligned_cols=110  Identities=17%  Similarity=0.223  Sum_probs=66.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----ccC------
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VTA------  104 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al~------  104 (350)
                      +++.|+|| |.+|..++..|++.|.  +|++.|++++  +....++....   ........  +|.+    .++      
T Consensus         5 k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~--~~~~~~l~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~~   77 (255)
T 2q2v_A            5 KTALVTGSTSGIGLGIAQVLARAGA--NIVLNGFGDP--APALAEIARHG---VKAVHHPADLSDVAQIEALFALAEREF   77 (255)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEECSSCC--HHHHHHHHTTS---CCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCch--HHHHHHHHhcC---CceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            57888998 9999999999999985  8999999876  32333443211   11222211  1221    233      


Q ss_pred             -CCCEEEEecCCCcC-c--cccH---HHHHHhhHH----HHHHHHhhhhccCCCeEEEEEcC
Q 018760          105 -GSDLCIVTAGARQI-A--GESR---LNLLQRNLS----LFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       105 -~aDiVIi~~g~~~~-~--g~~r---~~~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                       +.|++|.++|.... +  ..+.   ...+.-|+.    ..+.+.+.+.+.. .+.||++|.
T Consensus        78 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS  138 (255)
T 2q2v_A           78 GGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARN-WGRIINIAS  138 (255)
T ss_dssp             SSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcC
Confidence             79999999886432 1  1121   223444544    6667777776643 356777764

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=96.03  E-value=0.056  Score=48.59  Aligned_cols=114  Identities=12%  Similarity=0.133  Sum_probs=66.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEE-eCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALV-DAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----------  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~-D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----------  102 (350)
                      .++|.|+|| |.+|..++..|++.|.  +|++. ++++++++.....+....   ....+...  +|.++          
T Consensus        26 ~k~vlITGas~gIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~  100 (272)
T 4e3z_A           26 TPVVLVTGGSRGIGAAVCRLAARQGW--RVGVNYAANREAADAVVAAITESG---GEAVAIPGDVGNAADIAAMFSAVDR  100 (272)
T ss_dssp             SCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT---CEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCChhHHHHHHHHHHhcC---CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            346778898 9999999999999995  78776 677776665544554321   11222211  12111          


Q ss_pred             -cCCCCEEEEecCCCcCcc----ccH---HHHHHhh----HHHHHHHHhhhhcc--CCCeEEEEEcC
Q 018760          103 -TAGSDLCIVTAGARQIAG----ESR---LNLLQRN----LSLFKAIIPPLVKY--SPDCILLIVAN  155 (350)
Q Consensus       103 -l~~aDiVIi~~g~~~~~g----~~r---~~~~~~n----~~i~~~i~~~i~~~--~p~a~viv~tN  155 (350)
                       +...|+||.++|....++    .+.   ...+..|    ..+.+.+.+.+.+.  ...+.||++|-
T Consensus       101 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS  167 (272)
T 4e3z_A          101 QFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSS  167 (272)
T ss_dssp             HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             hCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcc
Confidence             136799999988643211    121   2223333    34555566666653  24566777764

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=96.03  E-value=0.015  Score=50.88  Aligned_cols=39  Identities=18%  Similarity=0.216  Sum_probs=33.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHH
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGE   78 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~   78 (350)
                      ++|.|+|| |.+|..++..|+..|.  +|++.|+++++++..
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~   41 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGK--ATYLTGRSESKLSTV   41 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHH
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHH
Confidence            35889998 8999999999999995  899999998877643

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.03  E-value=0.015  Score=56.00  Aligned_cols=41  Identities=20%  Similarity=0.234  Sum_probs=35.7

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHH
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRG   77 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~   77 (350)
                      .+..||+|+|+|.+|...+..+...|.  +|+.+|+++++++.
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga--~V~v~D~~~~~~~~  210 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSLGA--IVRAFDTRPEVKEQ  210 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCGGGHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHH
Confidence            456799999999999999998888885  89999999987763

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=96.02  E-value=0.0083  Score=55.94  Aligned_cols=65  Identities=15%  Similarity=0.254  Sum_probs=46.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEE-EEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccC--CCCEEEEe
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELA-LVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTA--GSDLCIVT  112 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~-L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~--~aDiVIi~  112 (350)
                      ++||+|||+|.+|...+..|...+-+ +|+ ++|+++++++.    +....    ...   .++++ .++  ++|+|+++
T Consensus         3 ~~~vgiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~----~~~~~----~~~---~~~~~~~l~~~~~D~V~i~   70 (331)
T 4hkt_A            3 TVRFGLLGAGRIGKVHAKAVSGNADA-RLVAVADAFPAAAEA----IAGAY----GCE---VRTIDAIEAAADIDAVVIC   70 (331)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCTTE-EEEEEECSSHHHHHH----HHHHT----TCE---ECCHHHHHHCTTCCEEEEC
T ss_pred             ceEEEEECCCHHHHHHHHHHhhCCCc-EEEEEECCCHHHHHH----HHHHh----CCC---cCCHHHHhcCCCCCEEEEe
Confidence            47999999999999999888876432 554 89999887653    33222    122   34664 455  79999999


Q ss_pred             c
Q 018760          113 A  113 (350)
Q Consensus       113 ~  113 (350)
                      .
T Consensus        71 t   71 (331)
T 4hkt_A           71 T   71 (331)
T ss_dssp             S
T ss_pred             C
Confidence            5

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.00  E-value=0.02  Score=52.04  Aligned_cols=76  Identities=21%  Similarity=0.274  Sum_probs=49.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccch--HHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKL--RGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSD  107 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l--~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aD  107 (350)
                      ++||.|+|| |.+|++++..|+..|.  +|++++++....  ......+.....  ...++...  +|   . ++++++|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~~~l~~--~~v~~v~~D~~d~~~l~~~~~~~d   79 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFKA--SGANIVHGSIDDHASLVEAVKNVD   79 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHHT--TTCEEECCCTTCHHHHHHHHHTCS
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--CEEEEECCcccccCHHHHHHHHHHHh--CCCEEEEeccCCHHHHHHHHcCCC
Confidence            468999999 9999999999999884  899999975422  111112222111  12333321  12   2 3578999


Q ss_pred             EEEEecCCC
Q 018760          108 LCIVTAGAR  116 (350)
Q Consensus       108 iVIi~~g~~  116 (350)
                      +||.+++..
T Consensus        80 ~vi~~a~~~   88 (308)
T 1qyc_A           80 VVISTVGSL   88 (308)
T ss_dssp             EEEECCCGG
T ss_pred             EEEECCcch
Confidence            999998753

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=95.99  E-value=0.008  Score=56.53  Aligned_cols=113  Identities=16%  Similarity=0.187  Sum_probs=68.7

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      ....++|+|||.|.+|+.+|..+...|.  +|+.+|++.++..      ..      ...  .. +. +.++.||+|+++
T Consensus       142 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~------~~------~~~--~~-~l~ell~~aDvV~~~  204 (333)
T 1dxy_A          142 ELGQQTVGVMGTGHIGQVAIKLFKGFGA--KVIAYDPYPMKGD------HP------DFD--YV-SLEDLFKQSDVIDLH  204 (333)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCCSSC------CT------TCE--EC-CHHHHHHHCSEEEEC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC--EEEEECCCcchhh------Hh------ccc--cC-CHHHHHhcCCEEEEc
Confidence            4456799999999999999999988785  8999999875320      00      011  12 45 568899999998


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC--CcchHHHHHHHHhCCCCCcEeeecC
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN--PVDILTYVAWKLSGLPSNRVIGSGT  180 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN--P~~~~~~~~~~~sg~~~~rviG~g~  180 (350)
                      .....   .++. ++  |.       +.+....|.+++|+++-  ++|.  ..+.+.  +...++-|.|.
T Consensus       205 ~P~~~---~t~~-li--~~-------~~l~~mk~ga~lIn~srg~~vd~--~aL~~a--L~~g~i~gA~L  257 (333)
T 1dxy_A          205 VPGIE---QNTH-II--NE-------AAFNLMKPGAIVINTARPNLIDT--QAMLSN--LKSGKLAGVGI  257 (333)
T ss_dssp             CCCCG---GGTT-SB--CH-------HHHHHSCTTEEEEECSCTTSBCH--HHHHHH--HHTTSEEEEEE
T ss_pred             CCCch---hHHH-Hh--CH-------HHHhhCCCCcEEEECCCCcccCH--HHHHHH--HHhCCccEEEE
Confidence            64321   1110 00  11       12233467899999973  4443  233222  22346665543

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=95.99  E-value=0.069  Score=48.70  Aligned_cols=117  Identities=13%  Similarity=0.170  Sum_probs=69.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCC-CCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc-----------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDF-VEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA-----------  101 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~-~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~-----------  101 (350)
                      .+++.|+|| |.+|..++..|++.|. ...|++.|+++++++....++..... .........  +|.+           
T Consensus        33 ~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           33 KKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFP-NAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCT-TCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCC-CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            357889998 8999999999998873 23899999999888776666654321 011111111  1211           


Q ss_pred             ccCCCCEEEEecCCCcC--c--cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          102 VTAGSDLCIVTAGARQI--A--GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       102 al~~aDiVIi~~g~~~~--~--g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      .+...|++|.++|....  +  ..+.   ...+.-|    ..+.+.+.+.+.+.. .+.||++|-
T Consensus       112 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS  175 (287)
T 3rku_A          112 EFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKN-SGDIVNLGS  175 (287)
T ss_dssp             GGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             hcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEECC
Confidence            12368999999986431  1  1122   2223334    345556666665543 455666653

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=95.99  E-value=0.039  Score=51.09  Aligned_cols=85  Identities=16%  Similarity=0.205  Sum_probs=50.7

Q ss_pred             CCCCCCCCC-CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCC----------ccchHHHHHHHHHHhhcCCCceE
Q 018760           27 HAAPPSPTK-RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAK----------ADKLRGEMLDLQHAAAFLPRTKI   94 (350)
Q Consensus        27 ~~~~~~~~~-~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~----------~~~l~~~~~dl~~~~~~~~~~~v   94 (350)
                      ..+|.+|.. +.+++.|+|+ |.+|..++..|++.|.  +|++.|++          .++++....++....   .....
T Consensus        16 ~~~p~~m~~l~gk~vlVTGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~   90 (322)
T 3qlj_A           16 TQGPGSMGVVDGRVVIVTGAGGGIGRAHALAFAAEGA--RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAG---GEAVA   90 (322)
T ss_dssp             ------CCTTTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTT---CEEEE
T ss_pred             ccCCchhcccCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCcccccccccccHHHHHHHHHHHHhcC---CcEEE
Confidence            344444433 3345777798 8999999999999995  99999987          555555555554321   11111


Q ss_pred             EEcCC---ccc----c-------CCCCEEEEecCCCc
Q 018760           95 LASVD---YAV----T-------AGSDLCIVTAGARQ  117 (350)
Q Consensus        95 ~~t~~---~~a----l-------~~aDiVIi~~g~~~  117 (350)
                      . ..|   .++    +       ...|++|.++|...
T Consensus        91 ~-~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~  126 (322)
T 3qlj_A           91 D-GSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIVR  126 (322)
T ss_dssp             E-CCCTTSHHHHHHHHHHHHHHHSCCCEEECCCCCCC
T ss_pred             E-ECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            1 122   111    2       27899999998643

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=95.98  E-value=0.016  Score=53.12  Aligned_cols=113  Identities=14%  Similarity=0.181  Sum_probs=62.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeC-Cccc---hHHHHHHHHHH-hhc-CCCceEEEcCCc-cccCCCCEE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDA-KADK---LRGEMLDLQHA-AAF-LPRTKILASVDY-AVTAGSDLC  109 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~-~~~~---l~~~~~dl~~~-~~~-~~~~~v~~t~~~-~al~~aDiV  109 (350)
                      +||.|+|| |.+|++++..|+..|.  +|+.+++ +++.   +.. ..++... ... ....++.-..+. ++++++|+|
T Consensus         2 k~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~v   78 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLLENGY--SVNTTIRADPERKRDVSF-LTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGI   78 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEECCCC----CCCHH-HHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEE
T ss_pred             CEEEEECChhHHHHHHHHHHHHCCC--EEEEEEeCCccchhHHHH-HHhhhccCCceEEEecCCCCHHHHHHHHcCCCEE
Confidence            58999998 9999999999999885  8998887 6532   211 1111100 000 001111100112 357899999


Q ss_pred             EEecCCCcCcccc-HHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEc
Q 018760          110 IVTAGARQIAGES-RLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVA  154 (350)
Q Consensus       110 Ii~~g~~~~~g~~-r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~t  154 (350)
                      |.+++........ ..+.+..|+.-...+++.+.+. ... .+|++|
T Consensus        79 ih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~-~iV~~S  124 (322)
T 2p4h_X           79 FHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVK-RFIYTS  124 (322)
T ss_dssp             EECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCC-EEEEEE
T ss_pred             EEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCcc-EEEEec
Confidence            9998532101111 1235667888888888877776 333 355554

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.98  E-value=0.035  Score=48.69  Aligned_cols=40  Identities=13%  Similarity=0.334  Sum_probs=33.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      .++|.|+|| |.+|..++..|++.|...+|+++|+++++++
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~   43 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKAT   43 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCH
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHH
Confidence            357899998 9999999999999882128999999987765

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=95.98  E-value=0.0054  Score=57.97  Aligned_cols=90  Identities=14%  Similarity=0.208  Sum_probs=60.2

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      ...++|+|||.|.+|..+|..+...|.  +|+.+|++++..      ...      .  +... +. +.+++||+|+++.
T Consensus       146 l~gktvgIiGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~------~~~------~--~~~~-~l~ell~~aDvV~l~~  208 (343)
T 2yq5_A          146 IYNLTVGLIGVGHIGSAVAEIFSAMGA--KVIAYDVAYNPE------FEP------F--LTYT-DFDTVLKEADIVSLHT  208 (343)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCCGG------GTT------T--CEEC-CHHHHHHHCSEEEECC
T ss_pred             cCCCeEEEEecCHHHHHHHHHHhhCCC--EEEEECCChhhh------hhc------c--cccc-CHHHHHhcCCEEEEcC
Confidence            345799999999999999999988886  999999987531      110      1  1112 55 5688999999996


Q ss_pred             CCCc-CccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          114 GARQ-IAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       114 g~~~-~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      .... ..+.     +  |.       +.+....|++++|+++-
T Consensus       209 Plt~~t~~l-----i--~~-------~~l~~mk~gailIN~aR  237 (343)
T 2yq5_A          209 PLFPSTENM-----I--GE-------KQLKEMKKSAYLINCAR  237 (343)
T ss_dssp             CCCTTTTTC-----B--CH-------HHHHHSCTTCEEEECSC
T ss_pred             CCCHHHHHH-----h--hH-------HHHhhCCCCcEEEECCC
Confidence            5321 1111     0  11       12333468999999974

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=95.98  E-value=0.071  Score=47.16  Aligned_cols=111  Identities=13%  Similarity=0.225  Sum_probs=65.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeC-CccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c------
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDA-KADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T------  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~-~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l------  103 (350)
                      +++.|+|+ |.+|.+++..|++.|.  +|++.|. ++++++....++....   ........  +|.++    +      
T Consensus         5 k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~   79 (246)
T 3osu_A            5 KSALVTGASRGIGRSIALQLAEEGY--NVAVNYAGSKEKAEAVVEEIKAKG---VDSFAIQANVADADEVKAMIKEVVSQ   79 (246)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT---SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            46788898 8999999999999995  8989887 4466665555554321   12222211  12111    2      


Q ss_pred             -CCCCEEEEecCCCcCc---cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEc
Q 018760          104 -AGSDLCIVTAGARQIA---GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       104 -~~aDiVIi~~g~~~~~---g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                       ...|++|.++|.....   ..+.   ...+.-|    ..+.+...+.+.+.. .+.+|++|
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~iv~is  140 (246)
T 3osu_A           80 FGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQR-SGAIINLS  140 (246)
T ss_dssp             HSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEc
Confidence             2789999998864321   1121   1233334    345555566655543 45566665

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=95.97  E-value=0.023  Score=55.98  Aligned_cols=92  Identities=13%  Similarity=0.160  Sum_probs=61.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      ....++|+|||.|.+|..+|..+...|.  +|+.+|+++.+...   ....      ..++   .+. +.+++||+|+++
T Consensus       254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~--~Viv~d~~~~~~~~---a~~~------g~~~---~~l~ell~~aDiVi~~  319 (479)
T 1v8b_A          254 LISGKIVVICGYGDVGKGCASSMKGLGA--RVYITEIDPICAIQ---AVME------GFNV---VTLDEIVDKGDFFITC  319 (479)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTC--EEEEECSCHHHHHH---HHTT------TCEE---CCHHHHTTTCSEEEEC
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHhCcC--EEEEEeCChhhHHH---HHHc------CCEe---cCHHHHHhcCCEEEEC
Confidence            4456799999999999999999988885  99999998764321   0111      1222   245 568999999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      .+...   .-       |.       +.+....|++++++++-.
T Consensus       320 ~~t~~---lI-------~~-------~~l~~MK~gailiNvgrg  346 (479)
T 1v8b_A          320 TGNVD---VI-------KL-------EHLLKMKNNAVVGNIGHF  346 (479)
T ss_dssp             CSSSS---SB-------CH-------HHHTTCCTTCEEEECSST
T ss_pred             CChhh---hc-------CH-------HHHhhcCCCcEEEEeCCC
Confidence            53221   10       11       223344678999999743

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=95.97  E-value=0.0032  Score=60.33  Aligned_cols=93  Identities=16%  Similarity=0.228  Sum_probs=59.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      ....++|+|||.|.||..+|..+...|.  +|..+|+..+...         .    ...   ..+. +.+++||+|+++
T Consensus       116 ~l~gktvGIIGlG~IG~~vA~~l~a~G~--~V~~~d~~~~~~~---------~----~~~---~~sl~ell~~aDiV~l~  177 (381)
T 3oet_A          116 SLRDRTIGIVGVGNVGSRLQTRLEALGI--RTLLCDPPRAARG---------D----EGD---FRTLDELVQEADVLTFH  177 (381)
T ss_dssp             CGGGCEEEEECCSHHHHHHHHHHHHTTC--EEEEECHHHHHTT---------C----CSC---BCCHHHHHHHCSEEEEC
T ss_pred             ccCCCEEEEEeECHHHHHHHHHHHHCCC--EEEEECCChHHhc---------c----Ccc---cCCHHHHHhhCCEEEEc
Confidence            3456799999999999999999998886  9999997432110         1    111   1245 568899999998


Q ss_pred             cCCCcCccc--cHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          113 AGARQIAGE--SRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       113 ~g~~~~~g~--~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ...... |.  ++. ++  |.       +.+....|++++|+++-
T Consensus       178 ~Plt~~-g~~~T~~-li--~~-------~~l~~mk~gailIN~aR  211 (381)
T 3oet_A          178 TPLYKD-GPYKTLH-LA--DE-------TLIRRLKPGAILINACR  211 (381)
T ss_dssp             CCCCCS-STTCCTT-SB--CH-------HHHHHSCTTEEEEECSC
T ss_pred             CcCCcc-ccccchh-hc--CH-------HHHhcCCCCcEEEECCC
Confidence            653211 00  110 01  11       12333468899999974

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=95.97  E-value=0.055  Score=43.14  Aligned_cols=107  Identities=13%  Similarity=0.155  Sum_probs=63.6

Q ss_pred             CCCeEEEEcCC----hhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEE
Q 018760           36 RHTKISVIGTG----NVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIV  111 (350)
Q Consensus        36 ~~~KI~IIGAG----~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi  111 (350)
                      ++.+|+||||+    ..|..+...|.+.++  +|+.++...+.+.+              .+  ...+.+++.+.|++++
T Consensus         3 ~p~siAVVGaS~~~~~~g~~v~~~L~~~g~--~V~pVnP~~~~i~G--------------~~--~y~sl~dlp~vDlavi   64 (122)
T 3ff4_A            3 AMKKTLILGATPETNRYAYLAAERLKSHGH--EFIPVGRKKGEVLG--------------KT--IINERPVIEGVDTVTL   64 (122)
T ss_dssp             CCCCEEEETCCSCTTSHHHHHHHHHHHHTC--CEEEESSSCSEETT--------------EE--CBCSCCCCTTCCEEEE
T ss_pred             CCCEEEEEccCCCCCCHHHHHHHHHHHCCC--eEEEECCCCCcCCC--------------ee--ccCChHHCCCCCEEEE
Confidence            45789999994    578888888888886  78888775543321              12  1234555555899999


Q ss_pred             ecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCC
Q 018760          112 TAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTN  181 (350)
Q Consensus       112 ~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~  181 (350)
                      +..                .+.+.++.+++.+....++++...--.+-+...+ +..|+   |++| .|.
T Consensus        65 ~~p----------------~~~v~~~v~e~~~~g~k~v~~~~G~~~~e~~~~a-~~~Gi---rvv~-nC~  113 (122)
T 3ff4_A           65 YIN----------------PQNQLSEYNYILSLKPKRVIFNPGTENEELEEIL-SENGI---EPVI-GCT  113 (122)
T ss_dssp             CSC----------------HHHHGGGHHHHHHHCCSEEEECTTCCCHHHHHHH-HHTTC---EEEE-SCH
T ss_pred             EeC----------------HHHHHHHHHHHHhcCCCEEEECCCCChHHHHHHH-HHcCC---eEEC-CcC
Confidence            852                3444445555555566664322111112233333 44576   7887 564

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=95.97  E-value=0.11  Score=48.21  Aligned_cols=112  Identities=15%  Similarity=0.123  Sum_probs=64.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeC---------CccchHHHHHHHHHHhhcCCCceEEE-cCCcc---
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDA---------KADKLRGEMLDLQHAAAFLPRTKILA-SVDYA---  101 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~---------~~~~l~~~~~dl~~~~~~~~~~~v~~-t~~~~---  101 (350)
                      +.+++.|+|| |.+|..++..|+..|.  +|++.|+         +.++++....++....     ..+.. -++.+   
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga--~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~-----~~~~~D~~~~~~~~   80 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG-----GKAVANYDSVEAGE   80 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT-----CEEEEECCCGGGHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCcccccccCCHHHHHHHHHHHHhhC-----CeEEEeCCCHHHHH
Confidence            3457888898 8999999999999985  8999886         3445554444454321     11111 11221   


Q ss_pred             --------ccCCCCEEEEecCCCcCc---cccHH---HHHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760          102 --------VTAGSDLCIVTAGARQIA---GESRL---NLLQRNL----SLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       102 --------al~~aDiVIi~~g~~~~~---g~~r~---~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                              .+...|++|..+|.....   ..+..   ..+.-|.    .+.+.+.+.|.+.. .+.||++|-
T Consensus        81 ~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~grIV~vsS  151 (319)
T 1gz6_A           81 KLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTAS  151 (319)
T ss_dssp             HHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECC
Confidence                    134689999999865322   12221   2233343    34555555555543 456777653

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.96  E-value=0.084  Score=46.98  Aligned_cols=107  Identities=19%  Similarity=0.161  Sum_probs=63.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc-----------c
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA-----------V  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~-----------a  102 (350)
                      .+++.|+|| |.+|..++..|++.|.  +|+++|+++++ +....++.       . .+...  +|.+           .
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~-~~~~~~~~-------~-~~~~~D~~~~~~~~~~~~~~~~~   74 (256)
T 2d1y_A            6 GKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEG-KEVAEAIG-------G-AFFQVDLEDERERVRFVEEAAYA   74 (256)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTH-HHHHHHHT-------C-EEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhH-HHHHHHhh-------C-CEEEeeCCCHHHHHHHHHHHHHH
Confidence            357899998 9999999999999995  89999998875 43332321       1 11111  1211           1


Q ss_pred             cCCCCEEEEecCCCcCc---cccH---HHHHHhhHH----HHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 TAGSDLCIVTAGARQIA---GESR---LNLLQRNLS----LFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~~---g~~r---~~~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +...|++|.++|.....   ..+.   ...+..|+.    +.+.+.+.+.+. ..+.+|++|-
T Consensus        75 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS  136 (256)
T 2d1y_A           75 LGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKV-GGGAIVNVAS  136 (256)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence            23689999998864321   1121   223344433    444455555543 3466777754

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=95.94  E-value=0.019  Score=56.71  Aligned_cols=91  Identities=14%  Similarity=0.130  Sum_probs=60.7

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      ....++|+|||.|.+|..+|..+...|.  +|+.+|+++.+..      +...   ...++  . +. +.++.||+|+++
T Consensus       274 ~L~GktVgIIG~G~IG~~vA~~l~~~G~--~V~v~d~~~~~~~------~a~~---~G~~~--~-~l~ell~~aDiVi~~  339 (494)
T 3d64_A          274 MIAGKIAVVAGYGDVGKGCAQSLRGLGA--TVWVTEIDPICAL------QAAM---EGYRV--V-TMEYAADKADIFVTA  339 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC--EEEEECSCHHHHH------HHHT---TTCEE--C-CHHHHTTTCSEEEEC
T ss_pred             ccCCCEEEEEccCHHHHHHHHHHHHCCC--EEEEEeCChHhHH------HHHH---cCCEe--C-CHHHHHhcCCEEEEC
Confidence            3456799999999999999999987775  8999999876421      1111   01222  2 45 568999999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      .+...   .-       |.       +.+....|++++|+++-
T Consensus       340 ~~t~~---lI-------~~-------~~l~~MK~gAilINvgr  365 (494)
T 3d64_A          340 TGNYH---VI-------NH-------DHMKAMRHNAIVCNIGH  365 (494)
T ss_dssp             SSSSC---SB-------CH-------HHHHHCCTTEEEEECSS
T ss_pred             CCccc---cc-------CH-------HHHhhCCCCcEEEEcCC
Confidence            63221   10       11       12233467899999974

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=95.92  E-value=0.013  Score=50.01  Aligned_cols=105  Identities=13%  Similarity=0.173  Sum_probs=60.1

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGA  115 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~  115 (350)
                      +|||.|+|| |.+|+.++..|+ .|.  +|+++|++++....   |+.+...      +.  .-.+.+...|+||.++|.
T Consensus         3 kM~vlVtGasg~iG~~~~~~l~-~g~--~V~~~~r~~~~~~~---D~~~~~~------~~--~~~~~~~~~d~vi~~ag~   68 (202)
T 3d7l_A            3 AMKILLIGASGTLGSAVKERLE-KKA--EVITAGRHSGDVTV---DITNIDS------IK--KMYEQVGKVDAIVSATGS   68 (202)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHT-TTS--EEEEEESSSSSEEC---CTTCHHH------HH--HHHHHHCCEEEEEECCCC
T ss_pred             CcEEEEEcCCcHHHHHHHHHHH-CCC--eEEEEecCccceee---ecCCHHH------HH--HHHHHhCCCCEEEECCCC
Confidence            468999999 999999999999 774  89999998641110   1111000      00  000112357999999885


Q ss_pred             CcCc---cccH---HHHHHhhHHHHHHHHhhhhccC-CCeEEEEEcC
Q 018760          116 RQIA---GESR---LNLLQRNLSLFKAIIPPLVKYS-PDCILLIVAN  155 (350)
Q Consensus       116 ~~~~---g~~r---~~~~~~n~~i~~~i~~~i~~~~-p~a~viv~tN  155 (350)
                      ....   ..+.   ...+..|..-...+.+.+.+.- ..+.++++|.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS  115 (202)
T 3d7l_A           69 ATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTG  115 (202)
T ss_dssp             CCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECC
T ss_pred             CCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcc
Confidence            4211   1121   2334556655556666555541 1255666653

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=95.90  E-value=0.0066  Score=56.44  Aligned_cols=69  Identities=22%  Similarity=0.209  Sum_probs=45.7

Q ss_pred             CCeEEEEcCChhHH-HHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcccc-CCCCEEEEecC
Q 018760           37 HTKISVIGTGNVGM-AIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVT-AGSDLCIVTAG  114 (350)
Q Consensus        37 ~~KI~IIGAG~vG~-~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al-~~aDiVIi~~g  114 (350)
                      ++||+|||+|.+|. .++..|...+- .+|+++|+++++++.    +.....    .....++..+.+ .++|+|+++..
T Consensus         2 ~~~igiIG~G~ig~~~~~~~l~~~~~-~~l~v~d~~~~~~~~----~a~~~g----~~~~~~~~~~~l~~~~D~V~i~tp   72 (323)
T 1xea_A            2 SLKIAMIGLGDIAQKAYLPVLAQWPD-IELVLCTRNPKVLGT----LATRYR----VSATCTDYRDVLQYGVDAVMIHAA   72 (323)
T ss_dssp             CEEEEEECCCHHHHHTHHHHHTTSTT-EEEEEECSCHHHHHH----HHHHTT----CCCCCSSTTGGGGGCCSEEEECSC
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCCC-ceEEEEeCCHHHHHH----HHHHcC----CCccccCHHHHhhcCCCEEEEECC
Confidence            47999999999998 48887766532 267799999887663    322221    111112334556 78999999964

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=95.89  E-value=0.023  Score=56.29  Aligned_cols=91  Identities=15%  Similarity=0.225  Sum_probs=61.6

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      ....+|+|+|+|.+|..++..+...|.  +|+.+|+++++++. +.  .  .    ..++   .+. +.++++|+||.+.
T Consensus       272 l~GktV~IiG~G~IG~~~A~~lka~Ga--~Viv~d~~~~~~~~-A~--~--~----Ga~~---~~l~e~l~~aDvVi~at  337 (494)
T 3ce6_A          272 IGGKKVLICGYGDVGKGCAEAMKGQGA--RVSVTEIDPINALQ-AM--M--E----GFDV---VTVEEAIGDADIVVTAT  337 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHH-HH--H--T----TCEE---CCHHHHGGGCSEEEECS
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH-HH--H--c----CCEE---ecHHHHHhCCCEEEECC
Confidence            345699999999999999999988885  89999999876542 11  1  1    1122   134 5688999999997


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      +.+.--          +.       +.+....|.+++++++..
T Consensus       338 gt~~~i----------~~-------~~l~~mk~ggilvnvG~~  363 (494)
T 3ce6_A          338 GNKDII----------ML-------EHIKAMKDHAILGNIGHF  363 (494)
T ss_dssp             SSSCSB----------CH-------HHHHHSCTTCEEEECSSS
T ss_pred             CCHHHH----------HH-------HHHHhcCCCcEEEEeCCC
Confidence            643210          10       112223678999998754

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=95.89  E-value=0.0045  Score=57.01  Aligned_cols=76  Identities=13%  Similarity=0.117  Sum_probs=48.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc-cch-HHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA-DKL-RGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSD  107 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~-~~l-~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aD  107 (350)
                      +|||.|+|| |.+|++++..|+..+.  +|++++++. ... ......+.....  ....+...  +|   . ++++++|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~l~~~~~--~~v~~v~~D~~d~~~l~~a~~~~d   79 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSH--PTFIYARPLTPDSTPSSVQLREEFRS--MGVTIIEGEMEEHEKMVSVLKQVD   79 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECCCCTTCCHHHHHHHHHHHH--TTCEEEECCTTCHHHHHHHHTTCS
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCC--cEEEEECCcccccChHHHHHHHHhhc--CCcEEEEecCCCHHHHHHHHcCCC
Confidence            468999998 9999999999999884  899999986 210 001111221111  12333322  12   2 4588999


Q ss_pred             EEEEecCCC
Q 018760          108 LCIVTAGAR  116 (350)
Q Consensus       108 iVIi~~g~~  116 (350)
                      +||.+++..
T Consensus        80 ~vi~~a~~~   88 (321)
T 3c1o_A           80 IVISALPFP   88 (321)
T ss_dssp             EEEECCCGG
T ss_pred             EEEECCCcc
Confidence            999998743

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=95.88  E-value=0.0077  Score=56.91  Aligned_cols=34  Identities=15%  Similarity=0.415  Sum_probs=31.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      +|||+|||||.+|.++|..|.+.|+  +|+++|.++
T Consensus         1 sm~V~IVGaGpaGl~~A~~L~~~G~--~v~v~Er~~   34 (412)
T 4hb9_A            1 SMHVGIIGAGIGGTCLAHGLRKHGI--KVTIYERNS   34 (412)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            4899999999999999999999997  999999854

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.88  E-value=0.0097  Score=58.58  Aligned_cols=71  Identities=15%  Similarity=0.180  Sum_probs=48.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceE-EEc-CC---c-cccCCCCEE
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKI-LAS-VD---Y-AVTAGSDLC  109 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v-~~t-~~---~-~al~~aDiV  109 (350)
                      +++||.|+|||.+|+.++..|++.+- .+|+++|+++++++..+    ...    .... ... ++   . ++++++|+|
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g-~~V~v~~R~~~ka~~la----~~~----~~~~~~~D~~d~~~l~~~l~~~DvV   92 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDD-INVTVACRTLANAQALA----KPS----GSKAISLDVTDDSALDKVLADNDVV   92 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTT-EEEEEEESSHHHHHHHH----GGG----TCEEEECCTTCHHHHHHHHHTSSEE
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCC-CeEEEEECCHHHHHHHH----Hhc----CCcEEEEecCCHHHHHHHHcCCCEE
Confidence            34689999999999999999998732 28999999988766432    211    1122 111 12   2 346799999


Q ss_pred             EEecCC
Q 018760          110 IVTAGA  115 (350)
Q Consensus       110 Ii~~g~  115 (350)
                      |.+++.
T Consensus        93 In~tp~   98 (467)
T 2axq_A           93 ISLIPY   98 (467)
T ss_dssp             EECSCG
T ss_pred             EECCch
Confidence            999764

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=95.88  E-value=0.0099  Score=55.38  Aligned_cols=70  Identities=19%  Similarity=0.262  Sum_probs=45.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHh-cCCCCeEEEEeCCccc-hHHHHHHHHHHhhcCCCceEEEcCCcccc------CCCC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILT-QDFVEELALVDAKADK-LRGEMLDLQHAAAFLPRTKILASVDYAVT------AGSD  107 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~-~~~~~ev~L~D~~~~~-l~~~~~dl~~~~~~~~~~~v~~t~~~~al------~~aD  107 (350)
                      +++||+|||+|.+|..++..+.. ..-+.-+.++|+++++ ...    +.....    .... +++.+++      .+.|
T Consensus         3 ~~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~----~a~~~g----~~~~-~~~~e~ll~~~~~~~iD   73 (312)
T 1nvm_B            3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLA----RAQRMG----VTTT-YAGVEGLIKLPEFADID   73 (312)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHH----HHHHTT----CCEE-SSHHHHHHHSGGGGGEE
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHH----HHHHcC----CCcc-cCCHHHHHhccCCCCCc
Confidence            45899999999999999888866 4333345678999876 332    222211    1121 2344433      5689


Q ss_pred             EEEEecC
Q 018760          108 LCIVTAG  114 (350)
Q Consensus       108 iVIi~~g  114 (350)
                      +|+++.+
T Consensus        74 vV~~atp   80 (312)
T 1nvm_B           74 FVFDATS   80 (312)
T ss_dssp             EEEECSC
T ss_pred             EEEECCC
Confidence            9999965

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=95.87  E-value=0.076  Score=47.03  Aligned_cols=110  Identities=14%  Similarity=0.196  Sum_probs=65.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc-cchHHHHHHHHHHhhcCCCceEEEc--CCccc----------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA-DKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----------  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~-~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----------  102 (350)
                      .+++.|+|| |.+|..++..|+..|.  +|++.|+++ ++++.   .+....   ........  +|.++          
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~---~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~   78 (249)
T 2ew8_A            7 DKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAEA---AIRNLG---RRVLTVKCDVSQPGDVEAFGKQVIS   78 (249)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHH---HHHHTT---CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCchhHHHH---HHHhcC---CcEEEEEeecCCHHHHHHHHHHHHH
Confidence            357899998 8999999999999985  899999988 65543   232211   12222211  12222          


Q ss_pred             -cCCCCEEEEecCCCcC-c--cccH---HHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 -TAGSDLCIVTAGARQI-A--GESR---LNLLQRNL----SLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 -l~~aDiVIi~~g~~~~-~--g~~r---~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                       +...|++|.++|.... +  ..+.   ...+.-|+    .+.+.+.+.+.+.. .+.||++|-
T Consensus        79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  141 (249)
T 2ew8_A           79 TFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTS  141 (249)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CeEEEEEcc
Confidence             2478999999886432 1  1121   22333343    34555666666543 456777654

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=95.87  E-value=0.0095  Score=59.59  Aligned_cols=98  Identities=20%  Similarity=0.234  Sum_probs=62.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      +...++|+|||.|.||..+|..|...|.  +|+.+|++... + .+   .. .    ....  . +. +.+++||+|+++
T Consensus       139 ~l~g~~vgIIG~G~IG~~vA~~l~~~G~--~V~~~d~~~~~-~-~a---~~-~----g~~~--~-~l~e~~~~aDvV~l~  203 (529)
T 1ygy_A          139 EIFGKTVGVVGLGRIGQLVAQRIAAFGA--YVVAYDPYVSP-A-RA---AQ-L----GIEL--L-SLDDLLARADFISVH  203 (529)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC--EEEEECTTSCH-H-HH---HH-H----TCEE--C-CHHHHHHHCSEEEEC
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHhCCC--EEEEECCCCCh-h-HH---Hh-c----CcEE--c-CHHHHHhcCCEEEEC
Confidence            3456799999999999999999988885  89999998742 2 11   11 1    1121  2 45 568899999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc--CCcch
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA--NPVDI  159 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NP~~~  159 (350)
                      .....   .        +..++.+  ..+....|++++++++  .+++.
T Consensus       204 ~P~~~---~--------t~~~i~~--~~~~~~k~g~ilin~arg~iv~~  239 (529)
T 1ygy_A          204 LPKTP---E--------TAGLIDK--EALAKTKPGVIIVNAARGGLVDE  239 (529)
T ss_dssp             CCCST---T--------TTTCBCH--HHHTTSCTTEEEEECSCTTSBCH
T ss_pred             CCCch---H--------HHHHhCH--HHHhCCCCCCEEEECCCCchhhH
Confidence            64321   0        1111111  1122345788999986  35554

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=95.87  E-value=0.055  Score=48.36  Aligned_cols=76  Identities=14%  Similarity=0.187  Sum_probs=49.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEE-eCCccchHHHHHHHHHHhhcCCCceEEEc--CCccc----c----
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALV-DAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T----  103 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~-D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l----  103 (350)
                      +.+++.|+|| |.+|..++..|+..|.  +|++. +.+++.++....++....   ........  +|.++    +    
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~   81 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA--NVVLTYNGAAEGAATAVAEIEKLG---RSALAIKADLTNAAEVEAAISAAA   81 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECSSCHHHHHHHHHHHTTT---SCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC---CceEEEEcCCCCHHHHHHHHHHHH
Confidence            3457889998 8999999999999995  88888 666666654444444321   12222211  12111    2    


Q ss_pred             ---CCCCEEEEecCCC
Q 018760          104 ---AGSDLCIVTAGAR  116 (350)
Q Consensus       104 ---~~aDiVIi~~g~~  116 (350)
                         ...|++|..+|..
T Consensus        82 ~~~g~id~lv~nAg~~   97 (259)
T 3edm_A           82 DKFGEIHGLVHVAGGL   97 (259)
T ss_dssp             HHHCSEEEEEECCCCC
T ss_pred             HHhCCCCEEEECCCcc
Confidence               2689999998754

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=95.86  E-value=0.021  Score=51.59  Aligned_cols=39  Identities=15%  Similarity=0.291  Sum_probs=33.8

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHH
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRG   77 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~   77 (350)
                      .+++.|+|| |.+|..++..|++.|.  +|+++|+++++++.
T Consensus         9 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~   48 (270)
T 1yde_A            9 GKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRA   48 (270)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH
Confidence            457899998 8999999999999995  89999999876654

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=95.86  E-value=0.098  Score=47.38  Aligned_cols=112  Identities=18%  Similarity=0.256  Sum_probs=66.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeC-CccchHHHHHHHHHHhhcCCCceEEEcCC---ccc----------
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDA-KADKLRGEMLDLQHAAAFLPRTKILASVD---YAV----------  102 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~-~~~~l~~~~~dl~~~~~~~~~~~v~~t~~---~~a----------  102 (350)
                      +++.|+|| |.+|..++..|++.|.  +|++.|+ ++++++....++....  ....... ..|   .++          
T Consensus        26 k~~lVTGas~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~-~~Dv~d~~~v~~~~~~~~~  100 (281)
T 3v2h_A           26 KTAVITGSTSGIGLAIARTLAKAGA--NIVLNGFGAPDEIRTVTDEVAGLS--SGTVLHH-PADMTKPSEIADMMAMVAD  100 (281)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTC--EEEEECCCCHHHHHHHHHHHHTTC--SSCEEEE-CCCTTCHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHhhcc--CCcEEEE-eCCCCCHHHHHHHHHHHHH
Confidence            46888898 8999999999999995  8999999 5555554444444321  1122222 122   111          


Q ss_pred             -cCCCCEEEEecCCCcCc---cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 -TAGSDLCIVTAGARQIA---GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 -l~~aDiVIi~~g~~~~~---g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                       +...|++|..+|.....   ..+.   ...+.-|    ..+.+.+.+.+.+.. .+.||++|-
T Consensus       101 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS  163 (281)
T 3v2h_A          101 RFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKG-WGRIINIAS  163 (281)
T ss_dssp             HTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECC
Confidence             23789999998864321   1122   1223334    345555666665543 456667653

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=95.86  E-value=0.009  Score=56.17  Aligned_cols=65  Identities=14%  Similarity=0.176  Sum_probs=47.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      +...++|+|||.|.||..+|..+...|.  +|+.+|+++++.   .   ....      ..  ..+. +.+++||+|+++
T Consensus       143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~d~~~~~~---~---~~~~------~~--~~~l~ell~~aDvV~l~  206 (333)
T 1j4a_A          143 EVRDQVVGVVGTGHIGQVFMQIMEGFGA--KVITYDIFRNPE---L---EKKG------YY--VDSLDDLYKQADVISLH  206 (333)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCCHH---H---HHTT------CB--CSCHHHHHHHCSEEEEC
T ss_pred             cCCCCEEEEEccCHHHHHHHHHHHHCCC--EEEEECCCcchh---H---HhhC------ee--cCCHHHHHhhCCEEEEc
Confidence            3446799999999999999999988885  899999987643   1   1111      11  1244 558899999999


Q ss_pred             cC
Q 018760          113 AG  114 (350)
Q Consensus       113 ~g  114 (350)
                      ..
T Consensus       207 ~p  208 (333)
T 1j4a_A          207 VP  208 (333)
T ss_dssp             SC
T ss_pred             CC
Confidence            64

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=95.85  E-value=0.14  Score=46.65  Aligned_cols=114  Identities=14%  Similarity=0.165  Sum_probs=63.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc--chHHHHHHHHHHhhcCCCceEEEcCC---ccc-------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD--KLRGEMLDLQHAAAFLPRTKILASVD---YAV-------  102 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~--~l~~~~~dl~~~~~~~~~~~v~~t~~---~~a-------  102 (350)
                      +.+++.|+|+ |.+|..++..|++.|.  +|++.|++.+  .++.....+....   ...... ..|   .+.       
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~Dv~d~~~v~~~~~~  121 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA--DVAINYLPAEEEDAQQVKALIEECG---RKAVLL-PGDLSDESFARSLVHK  121 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHHHHHHTT---CCEEEC-CCCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchhHHHHHHHHHHHcC---CcEEEE-EecCCCHHHHHHHHHH
Confidence            3457889998 8999999999999995  8999998732  3333222333211   111211 112   111       


Q ss_pred             ----cCCCCEEEEecCCCcC--c--cccH---HHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcC
Q 018760          103 ----TAGSDLCIVTAGARQI--A--GESR---LNLLQRNLSLFKAIIPPLVKY-SPDCILLIVAN  155 (350)
Q Consensus       103 ----l~~aDiVIi~~g~~~~--~--g~~r---~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN  155 (350)
                          +...|++|..+|....  +  ..+.   ...+.-|+.-...+.+.+..+ ...+.||++|-
T Consensus       122 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS  186 (294)
T 3r3s_A          122 AREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS  186 (294)
T ss_dssp             HHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence                2478999999986431  1  1121   223444544333344433332 23466777754

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=95.82  E-value=0.11  Score=46.49  Aligned_cols=116  Identities=19%  Similarity=0.187  Sum_probs=63.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc---cchHHHHHHHHHHhhcCCCceEEEc--CCccc----c--
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA---DKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----T--  103 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~---~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l--  103 (350)
                      +.+++.|+|| |.+|..++..|++.|.  +|++.++..   ++++....++....   ........  +|.++    +  
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~   84 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESV--NLVLHYHQAKDSDTANKLKDELEDQG---AKVALYQSDLSNEEEVAKLFDF   84 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSC--EEEEEESCGGGHHHHHHHHHHHHTTT---CEEEEEECCCCSHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCccCHHHHHHHHHHHHhcC---CcEEEEECCCCCHHHHHHHHHH
Confidence            4457888998 8999999999999995  899988754   34443333443221   11222211  12111    2  


Q ss_pred             -----CCCCEEEEecCCCcCc---cccH---HHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCC
Q 018760          104 -----AGSDLCIVTAGARQIA---GESR---LNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANP  156 (350)
Q Consensus       104 -----~~aDiVIi~~g~~~~~---g~~r---~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP  156 (350)
                           ...|++|.++|.....   ..+.   ...+.-|+.-...+.+.+.++ .+.+.+|+++-.
T Consensus        85 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~  149 (262)
T 3ksu_A           85 AEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATS  149 (262)
T ss_dssp             HHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCC
T ss_pred             HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEech
Confidence                 3679999998864321   1122   223344544333333333332 235667777644

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=95.81  E-value=0.0082  Score=58.42  Aligned_cols=74  Identities=16%  Similarity=0.179  Sum_probs=47.8

Q ss_pred             CCCeEEEEcCChhHH-HHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-cC--CCCEEEE
Q 018760           36 RHTKISVIGTGNVGM-AIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-TA--GSDLCIV  111 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~-~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l~--~aDiVIi  111 (350)
                      +++||+|||+|.+|. .++..|...+-+.-+.++|+++++++.    +...... +...+...+|+++ ++  ++|+|++
T Consensus        82 ~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~----~a~~~g~-~~~~~~~~~~~~~ll~~~~vD~V~i  156 (433)
T 1h6d_A           82 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKI----VAAEYGV-DPRKIYDYSNFDKIAKDPKIDAVYI  156 (433)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHH----HHHHTTC-CGGGEECSSSGGGGGGCTTCCEEEE
T ss_pred             CceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHH----HHHHhCC-CcccccccCCHHHHhcCCCCCEEEE
Confidence            457999999999997 788877765422224689999877653    3322211 1112444567754 44  7999999


Q ss_pred             ecC
Q 018760          112 TAG  114 (350)
Q Consensus       112 ~~g  114 (350)
                      +..
T Consensus       157 atp  159 (433)
T 1h6d_A          157 ILP  159 (433)
T ss_dssp             CSC
T ss_pred             cCC
Confidence            953

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=95.80  E-value=0.025  Score=50.19  Aligned_cols=107  Identities=17%  Similarity=0.209  Sum_probs=63.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHH-HHHHHHHHhhcCCCceEEEcCCcccc-CCCCEEEEecC
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRG-EMLDLQHAAAFLPRTKILASVDYAVT-AGSDLCIVTAG  114 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~-~~~dl~~~~~~~~~~~v~~t~~~~al-~~aDiVIi~~g  114 (350)
                      ++|.|+|| |.+|..++..|++.|.  +|++.|+++++++. ...|+.+.....   ++     .+.+ ...|++|.++|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~Dl~~~~~v~---~~-----~~~~~~~id~lv~~Ag   71 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRDAEVIADLSTAEGRKQAIA---DV-----LAKCSKGMDGLVLCAG   71 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHHHHHH---HH-----HTTCTTCCSEEEECCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhhccccccCCCCHHHHH---HH-----HHHhCCCCCEEEECCC
Confidence            46889998 9999999999999985  89999998765432 122444322100   00     0122 56799999998


Q ss_pred             CCcCccccHHHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          115 ARQIAGESRLNLLQRN----LSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      .....+ .-...+..|    ..+.+.+.+.+.+.. .+.||++|-.
T Consensus        72 ~~~~~~-~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~  115 (257)
T 1fjh_A           72 LGPQTK-VLGNVVSVNYFGATELMDAFLPALKKGH-QPAAVVISSV  115 (257)
T ss_dssp             CCTTCS-SHHHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECCG
T ss_pred             CCCCcc-cHHHHHHHhhHHHHHHHHHHHHHHhhcC-CcEEEEECCh
Confidence            654111 123334444    334455555554433 3567777643

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=95.79  E-value=0.0079  Score=56.33  Aligned_cols=61  Identities=8%  Similarity=0.070  Sum_probs=42.4

Q ss_pred             CCCeEEEEcCChhHH-HHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-c---CCCCEEE
Q 018760           36 RHTKISVIGTGNVGM-AIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-T---AGSDLCI  110 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~-~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l---~~aDiVI  110 (350)
                      +++||+|||+|.+|. ..+..|...+-+.=+.++|+++++.               ..++  .+++++ +   .+.|+|+
T Consensus        24 ~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~~---------------g~~~--~~~~~~ll~~~~~vD~V~   86 (330)
T 4ew6_A           24 SPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTVE---------------GVNS--YTTIEAMLDAEPSIDAVS   86 (330)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCCT---------------TSEE--ESSHHHHHHHCTTCCEEE
T ss_pred             CCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhhc---------------CCCc--cCCHHHHHhCCCCCCEEE
Confidence            358999999999998 6787777764333356789887531               2232  457654 3   4699999


Q ss_pred             Eec
Q 018760          111 VTA  113 (350)
Q Consensus       111 i~~  113 (350)
                      ++.
T Consensus        87 i~t   89 (330)
T 4ew6_A           87 LCM   89 (330)
T ss_dssp             ECS
T ss_pred             EeC
Confidence            985

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=95.77  E-value=0.0064  Score=57.16  Aligned_cols=90  Identities=20%  Similarity=0.169  Sum_probs=59.4

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      ...++|+|||.|.+|..+|..+...|.  +|+.+|++.++.      +..      .  +... +. +.++.||+|+++.
T Consensus       144 l~g~~vgIiG~G~IG~~~A~~l~~~G~--~V~~~d~~~~~~------~~~------~--~~~~-~l~ell~~aDvV~~~~  206 (331)
T 1xdw_A          144 VRNCTVGVVGLGRIGRVAAQIFHGMGA--TVIGEDVFEIKG------IED------Y--CTQV-SLDEVLEKSDIITIHA  206 (331)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCCCS------CTT------T--CEEC-CHHHHHHHCSEEEECC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC--EEEEECCCccHH------HHh------c--cccC-CHHHHHhhCCEEEEec
Confidence            456799999999999999999988785  899999987543      110      0  1112 45 5688999999986


Q ss_pred             CCCc-CccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          114 GARQ-IAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       114 g~~~-~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      .... ..+.     +  |    +   +.+....|.+++|+++-
T Consensus       207 p~t~~t~~l-----i--~----~---~~l~~mk~ga~lin~sr  235 (331)
T 1xdw_A          207 PYIKENGAV-----V--T----R---DFLKKMKDGAILVNCAR  235 (331)
T ss_dssp             CCCTTTCCS-----B--C----H---HHHHTSCTTEEEEECSC
T ss_pred             CCchHHHHH-----h--C----H---HHHhhCCCCcEEEECCC
Confidence            4321 1111     0  1    1   12233468899999973

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=95.75  E-value=0.052  Score=48.52  Aligned_cols=105  Identities=17%  Similarity=0.265  Sum_probs=62.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-----------cccC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-----------AVTA  104 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-----------~al~  104 (350)
                      .++|.|+|| |.+|..++..|++.|.  +|++.++++++++.       ...+  ..++   +|.           +.+.
T Consensus        21 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~-------~~~~--~~Dl---~d~~~v~~~~~~~~~~~g   86 (253)
T 2nm0_A           21 SRSVLVTGGNRGIGLAIARAFADAGD--KVAITYRSGEPPEG-------FLAV--KCDI---TDTEQVEQAYKEIEETHG   86 (253)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTT-------SEEE--ECCT---TSHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHhhcc-------ceEE--EecC---CCHHHHHHHHHHHHHHcC
Confidence            457899999 9999999999999995  89999998876542       0000  0000   111           1233


Q ss_pred             CCCEEEEecCCCcCc------cccHHHHHHhhH----HHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          105 GSDLCIVTAGARQIA------GESRLNLLQRNL----SLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       105 ~aDiVIi~~g~~~~~------g~~r~~~~~~n~----~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      ..|++|..+|.....      .+.-...+.-|+    .+.+.+.+.+.+.. .+.||++|--
T Consensus        87 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~  147 (253)
T 2nm0_A           87 PVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAK-KGRVVLISSV  147 (253)
T ss_dssp             SCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECCC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEECch
Confidence            579999998864321      111223344443    34455555555433 4667777644

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=95.75  E-value=0.065  Score=48.44  Aligned_cols=112  Identities=18%  Similarity=0.210  Sum_probs=66.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc-------
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT-------  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al-------  103 (350)
                      +++.|+|| |.+|..++..|+..|.  +|+++|+++++++....++...    ........  +|.+    .+       
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~~~~~   95 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW--SLVLTGRREERLQALAGELSAK----TRVLPLTLDVRDRAAMSAAVDNLPEEF   95 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTT----SCEEEEECCTTCHHHHHHHHHTCCGGG
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcC----CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            46888898 8999999999999995  8999999988776544444321    11222211  1211    12       


Q ss_pred             CCCCEEEEecCCCc--Cc--cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 AGSDLCIVTAGARQ--IA--GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 ~~aDiVIi~~g~~~--~~--g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ...|++|.++|...  .+  ..+.   ...+.-|    ....+.+.+.+.+......||++|-
T Consensus        96 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS  158 (272)
T 2nwq_A           96 ATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGS  158 (272)
T ss_dssp             SSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            34599999998643  12  1121   1223334    3345666666665443325666653

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=95.75  E-value=0.015  Score=55.28  Aligned_cols=94  Identities=15%  Similarity=0.264  Sum_probs=59.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      +...++|+|||.|.+|..+|..+...|.  +|+.+|++.. .+    .... .    ...  . .+. +.++.||+|+++
T Consensus       173 ~l~gktvGIIGlG~IG~~vA~~l~~fG~--~V~~~d~~~~-~~----~~~~-~----g~~--~-~~l~ell~~aDvV~l~  237 (365)
T 4hy3_A          173 LIAGSEIGIVGFGDLGKALRRVLSGFRA--RIRVFDPWLP-RS----MLEE-N----GVE--P-ASLEDVLTKSDFIFVV  237 (365)
T ss_dssp             CSSSSEEEEECCSHHHHHHHHHHTTSCC--EEEEECSSSC-HH----HHHH-T----TCE--E-CCHHHHHHSCSEEEEC
T ss_pred             ccCCCEEEEecCCcccHHHHHhhhhCCC--EEEEECCCCC-HH----HHhh-c----Cee--e-CCHHHHHhcCCEEEEc
Confidence            3446799999999999999998877675  9999998753 21    1111 1    112  1 245 568999999998


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      .....   +++ .++  |       .+.+....|++++|+++-
T Consensus       238 ~Plt~---~T~-~li--~-------~~~l~~mk~gailIN~aR  267 (365)
T 4hy3_A          238 AAVTS---ENK-RFL--G-------AEAFSSMRRGAAFILLSR  267 (365)
T ss_dssp             SCSSC---C----CC--C-------HHHHHTSCTTCEEEECSC
T ss_pred             CcCCH---HHH-hhc--C-------HHHHhcCCCCcEEEECcC
Confidence            64321   111 001  1       122344468999999973

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=95.75  E-value=0.0037  Score=58.49  Aligned_cols=100  Identities=18%  Similarity=0.234  Sum_probs=60.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhc-CCCCeEEEEeCCc--cchHHHHHHHHHHhhcCCCceEEEc--CCc----cccC--C
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQ-DFVEELALVDAKA--DKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTA--G  105 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~-~~~~ev~L~D~~~--~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~--~  105 (350)
                      |||.|+|| |.+|+.++..|+.. +.  +|+++|++.  +.++.. .++..    .....+...  +|.    +.++  +
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~-~~~~~----~~~~~~~~~Dl~d~~~~~~~~~~~~   73 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQD--TVVNIDKLTYAGNLESL-SDISE----SNRYNFEHADICDSAEITRIFEQYQ   73 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC--EEEEEECCCTTCCGGGG-TTTTT----CTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCC--eEEEEecCCCCCchhhh-hhhhc----CCCeEEEECCCCCHHHHHHHHhhcC
Confidence            68999998 99999999999987 54  899999864  223211 11110    112233222  122    2344  8


Q ss_pred             CCEEEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhcc
Q 018760          106 SDLCIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKY  144 (350)
Q Consensus       106 aDiVIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~  144 (350)
                      +|+||.+++.....  .....+.+..|+.-...+++.+.+.
T Consensus        74 ~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~  114 (361)
T 1kew_A           74 PDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKY  114 (361)
T ss_dssp             CSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHH
T ss_pred             CCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998754311  1122345556776667777766665

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=95.75  E-value=0.051  Score=48.42  Aligned_cols=40  Identities=20%  Similarity=0.378  Sum_probs=30.1

Q ss_pred             CCCCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           32 SPTKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        32 ~~~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      +|..+.+++.|+|| |.+|..++..|++.|.  +|++.|++.+
T Consensus         4 ~m~l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~   44 (257)
T 3tl3_A            4 SMEIRDAVAVVTGGASGLGLATTKRLLDAGA--QVVVLDIRGE   44 (257)
T ss_dssp             ------CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSCH
T ss_pred             cceecCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCchH
Confidence            34445567889998 8999999999999995  8999999654

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=95.73  E-value=0.012  Score=53.01  Aligned_cols=106  Identities=14%  Similarity=0.157  Sum_probs=63.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC-----------cccc
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD-----------YAVT  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~-----------~~al  103 (350)
                      ++|.|.|| +.+|.+++..|++.|.  +|++.|+++++++.    +....   ........  +|           .+.+
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~----~~~~~---~~~~~~~~Dv~~~~~v~~~v~~~~~~~   73 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGD--KVCFIDIDEKRSAD----FAKER---PNLFYFHGDVADPLTLKKFVEYAMEKL   73 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHH----HHTTC---TTEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH----HHHhc---CCEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            46778898 8999999999999995  99999999876653    22211   11111111  11           1234


Q ss_pred             CCCCEEEEecCCCcCc---cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEc
Q 018760          104 AGSDLCIVTAGARQIA---GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~---g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ..-|++|..+|.....   ..+..+   .+.-|    ....+...+.|.+.  .+-+|+++
T Consensus        74 g~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~--~G~IInis  132 (247)
T 3ged_A           74 QRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKN--KGRIINIA  132 (247)
T ss_dssp             SCCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEEC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc--CCcEEEEe
Confidence            6789999998864321   122211   22223    33456666666653  36677775

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.73  E-value=0.047  Score=48.42  Aligned_cols=118  Identities=14%  Similarity=0.154  Sum_probs=68.0

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEe-CCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----c---
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVD-AKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----V---  102 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D-~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----a---  102 (350)
                      ..+.++|.|+|| |.+|..++..|++.|.  +|++.+ ++.++.+....++....   ....+...  +|.+    .   
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~   84 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRLHKDGF--RVVAGCGPNSPRRVKWLEDQKALG---FDFYASEGNVGDWDSTKQAFDK   84 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHHHHTTE--EEEEEECTTCSSHHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC---CeeEEEecCCCCHHHHHHHHHH
Confidence            344567888898 8999999999999995  888888 66666665454554321   12222211  1211    1   


Q ss_pred             ----cCCCCEEEEecCCCcCc---cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcCCc
Q 018760          103 ----TAGSDLCIVTAGARQIA---GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVANPV  157 (350)
Q Consensus       103 ----l~~aDiVIi~~g~~~~~---g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNP~  157 (350)
                          +...|++|.++|.....   ..+.   ...+.-|    ..+.+.+.+.+.+.. .+.||++|-..
T Consensus        85 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~  152 (256)
T 3ezl_A           85 VKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERG-WGRIINISSVN  152 (256)
T ss_dssp             HHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCCC
T ss_pred             HHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcchh
Confidence                23679999998864321   1121   2233334    334555666666544 36677776543

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.71  E-value=0.0018  Score=63.56  Aligned_cols=70  Identities=14%  Similarity=0.180  Sum_probs=47.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEE-E-cCC---c-cccCCCCEEE
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKIL-A-SVD---Y-AVTAGSDLCI  110 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~-~-t~~---~-~al~~aDiVI  110 (350)
                      +++|.|+|+|.+|+.++..|+..+.  +|+++|+++++++.    +....   ...... . .++   . +.++++|+||
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~--~V~v~~R~~~~a~~----la~~~---~~~~~~~~Dv~d~~~l~~~l~~~DvVI   73 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGI--KVTVACRTLESAKK----LSAGV---QHSTPISLDVNDDAALDAEVAKHDLVI   73 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC--EEEEEESSHHHHHH----TTTTC---TTEEEEECCTTCHHHHHHHHTTSSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcC--EEEEEECCHHHHHH----HHHhc---CCceEEEeecCCHHHHHHHHcCCcEEE
Confidence            4589999999999999999998874  89999998876542    22111   111111 1 112   2 3467999999


Q ss_pred             EecCC
Q 018760          111 VTAGA  115 (350)
Q Consensus       111 i~~g~  115 (350)
                      .+++.
T Consensus        74 n~a~~   78 (450)
T 1ff9_A           74 SLIPY   78 (450)
T ss_dssp             ECCC-
T ss_pred             ECCcc
Confidence            99864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	350
d2ldxa1	159	c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu	2e-47
d1i0za1	160	c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho	4e-47
d1llda1	143	c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac	1e-46
d1ldna1	148	c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus	3e-43
d1ojua2	152	d.162.1.1 (A:164-331) Lactate dehydrogenase {Archa	3e-42
d1i0za2	172	d.162.1.1 (A:161-332) Lactate dehydrogenase {Human	2e-41
d1llda2	170	d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid	4e-41
d1ez4a1	146	c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac	4e-41
d2ldxa2	172	d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse	7e-41
d1guza1	142	c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium	1e-40
d1y6ja2	169	d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost	4e-40
d1o6za1	142	c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon	4e-40
d1hyha1	146	c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro	6e-40
d1y6ja1	142	c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi	6e-40
d1a5za1	140	c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto	1e-39
d1ojua1	142	c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon	3e-39
d1pzga1	154	c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas	6e-39
d1uxja1	142	c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex	3e-37
d1ldma2	169	d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi	3e-37
d1t2da1	150	c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p	4e-37
d1llca2	172	d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto	5e-35
d1uxja2	164	d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro	6e-35
d1guza2	163	d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro	7e-35
d1ez4a2	171	d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto	1e-34
d1a5za2	172	d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm	2e-34
d2cmda1	145	c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi	1e-33
d1hyha2	163	d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy	5e-33
d1hyea2	168	d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd	7e-33
d1mlda2	169	d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S	1e-32
d1pzga2	174	d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop	2e-32
d1t2da2	165	d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar	2e-32
d1ldna2	168	d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil	1e-31
d1o6za2	161	d.162.1.1 (A:163-330) Malate dehydrogenase {Archae	1e-31
d5mdha2	179	d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S	5e-31
d1mlda1	144	c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s	4e-30
d7mdha1	175	c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (	6e-30
d2cmda2	167	d.162.1.1 (A:146-312) Malate dehydrogenase {Escher	7e-30
d7mdha2	188	d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu	1e-28
d1hyea1	145	c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge	2e-28
d1y7ta1	154	c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th	5e-28
d1s6ya1	169	c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Baci	4e-27
d5mdha1	154	c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s	1e-26
d1up7a1	162	c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther	2e-26
d1b8pa2	171	d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp	2e-26
d1y7ta2	173	d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu	1e-25
d1u8xx1	167	c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase	9e-24
d1obba1	171	c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermoto	1e-22
d1vjta1	193	c.2.1.5 (A:-1-191) Putative alpha-glucosidase TM07	1e-06

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  155 bits (394), Expect = 2e-47
 Identities = 84/155 (54%), Positives = 112/155 (72%), Gaps = 1/155 (0%)

Query: 23  KPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL 82
           + I +  P     R  KI+V+G G+VGMA A +IL +   +ELALVDA  DKLRGE LDL
Sbjct: 6   QLIQNLVPEDKLSR-CKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDL 64

Query: 83  QHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLV 142
           QH + FL   KI+   DY V+A S L I+TAGAR ++G++RL+LLQRN+++ KAI+P ++
Sbjct: 65  QHGSLFLSTPKIVFGKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVI 124

Query: 143 KYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIG 177
           + SPDC +++V NPVDILTYV WK+SG P  RVIG
Sbjct: 125 QNSPDCKIIVVTNPVDILTYVVWKISGFPVGRVIG 159

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score =  155 bits (392), Expect = 4e-47
 Identities = 93/161 (57%), Positives = 118/161 (73%), Gaps = 3/161 (1%)

Query: 17  LTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR 76
           L +    P+   A    T  + KI+V+G G VGMA A +IL +   +ELALVD   DKL+
Sbjct: 3   LKEKLIAPV---AEEEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLK 59

Query: 77  GEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKA 136
           GEM+DLQH + FL   KI+A  DY+VTA S + +VTAG RQ  GESRLNL+QRN+++FK 
Sbjct: 60  GEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKF 119

Query: 137 IIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIG 177
           IIP +VKYSPDCI+++V+NPVDILTYV WKLSGLP +RVIG
Sbjct: 120 IIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIG 160

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score =  153 bits (387), Expect = 1e-46
 Identities = 59/142 (41%), Positives = 91/142 (64%)

Query: 38  TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS 97
           TK++VIG G VG  +A     +    E+ L D   +++  E+LD+QH ++F P   I  S
Sbjct: 2   TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS 61

Query: 98  VDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV 157
            D  +   +D+ ++TAG RQ  G+SRL L+   +++ KAI+P LVK +P+ I +++ NPV
Sbjct: 62  DDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPV 121

Query: 158 DILTYVAWKLSGLPSNRVIGSG 179
           DI T+VA KL+GLP N++ GSG
Sbjct: 122 DIATHVAQKLTGLPENQIFGSG 143

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  144 bits (364), Expect = 3e-43
 Identities = 54/141 (38%), Positives = 83/141 (58%)

Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
           ++ VIG G VG +    ++ Q   +E+ L+DA   K  G+ +D  H   F P+   +   
Sbjct: 8   RVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHG 67

Query: 99  DYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD 158
           DY     +DL ++ AGA Q  GE+RL+L+ +N+++F++I+  ++      + L+  NPVD
Sbjct: 68  DYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD 127

Query: 159 ILTYVAWKLSGLPSNRVIGSG 179
           ILTY  WK SGLP  RVIGSG
Sbjct: 128 ILTYATWKFSGLPHERVIGSG 148

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 152

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  142 bits (359), Expect = 3e-42
 Identities = 54/171 (31%), Positives = 84/171 (49%), Gaps = 20/171 (11%)

Query: 179 GTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIA 238
           G  LDS R +  L +    N    +A+I+GEHGDS     S     G             
Sbjct: 1   GNQLDSQRLKERLYNAGARN--IRRAWIIGEHGDSMFVAKSLADFDGEVDW--------- 49

Query: 239 YEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFY 298
                 E++  +V   A EVI  KG T +    +   + ++++ D  +I P S++ +G Y
Sbjct: 50  ------EAVENDVRFVAAEVIKRKGATIFGPAVAIYRMVKAVVEDTGEIIPTSMILQGEY 103

Query: 299 GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLG 349
           GI+  +V + +PA+LG+ G   V +I L+ EE  +LRNSAK + E   +LG
Sbjct: 104 GIE--NVAVGVPAKLGKNGA-EVADIKLSDEEIEKLRNSAKILRERLEELG 151

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score =  140 bits (354), Expect = 2e-41
 Identities = 79/171 (46%), Positives = 113/171 (66%), Gaps = 1/171 (0%)

Query: 178 SGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQI 237
           SG NLDS+RFR+L+A+ L ++      +I+GEHGDSSVA+WS ++V GV +     +   
Sbjct: 1   SGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGT 60

Query: 238 AYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGF 297
             + E  + +HK VV+SAYEVI LKGYT+WAIG S A+L  S++++  +IHPVS + KG 
Sbjct: 61  DNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGM 120

Query: 298 YGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348
           YGI+  +VFLSLP  L   G+  V N  L  +E  +L+ SA T+ ++Q  L
Sbjct: 121 YGIE-NEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTLWDIQKDL 170

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score =  139 bits (352), Expect = 4e-41
 Identities = 70/171 (40%), Positives = 106/171 (61%), Gaps = 3/171 (1%)

Query: 180 TNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLE-KQQIA 238
           TNLDS+R RFL+A    VN ++V AYI GEHGDS V LW S ++GGVP+  +        
Sbjct: 1   TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDP 60

Query: 239 YEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFY 298
            + +  E IH+EV ++AY++I+ KG T++AIG S  ++  +++ D  +I PVS + K F+
Sbjct: 61  LDADKREEIHQEVKNAAYKIINGKGATNYAIGMSGVDIIEAVLHDTNRILPVSSMLKDFH 120

Query: 299 GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLG 349
           GI   D+ +S+P  L R GV    N  ++ +E   L+ SA+T+ E  +Q G
Sbjct: 121 GIS--DICMSVPTLLNRQGVNNTINTPVSDKELAALKRSAETLKETAAQFG 169

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score =  139 bits (350), Expect = 4e-41
 Identities = 65/145 (44%), Positives = 89/145 (61%), Gaps = 1/145 (0%)

Query: 35  KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKI 94
             H K+ ++G G VG + A  +  Q   EE  +VD   D+ +G+ LDL+ A AF    KI
Sbjct: 3   PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKI 62

Query: 95  LASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154
             S +Y+    +DL ++TAGA Q  GESRL+L+ +NL++  +I+ P+V    D I L+ A
Sbjct: 63  Y-SGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121

Query: 155 NPVDILTYVAWKLSGLPSNRVIGSG 179
           NPVDILTY  WK SG P  RVIGSG
Sbjct: 122 NPVDILTYATWKFSGFPKERVIGSG 146

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  139 bits (350), Expect = 7e-41
 Identities = 75/173 (43%), Positives = 113/173 (65%), Gaps = 1/173 (0%)

Query: 178 SGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQI 237
           SG NLDS+RFR+L+ + L VN      +++GEHGDSSV +WS ++V GV + S       
Sbjct: 1   SGCNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGT 60

Query: 238 AYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGF 297
              K+  +++HK+VV+  YEV+ +KGYTSWAIG S  +LARSI+++ +++HPV+ L KGF
Sbjct: 61  DKNKQHWKNVHKQVVEGGYEVLDMKGYTSWAIGLSVTDLARSILKNLKRVHPVTTLVKGF 120

Query: 298 YGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQLGI 350
           +GI   +VFLS+P  LG  G+     +++  EE   L+ SA T+  +Q  L +
Sbjct: 121 HGIK-EEVFLSIPCVLGESGITDFVKVNMTAEEEGLLKKSADTLWNMQKNLEL 172

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score =  137 bits (347), Expect = 1e-40
 Identities = 58/140 (41%), Positives = 85/140 (60%), Gaps = 1/140 (0%)

Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQH-AAAFLPRTKILAS 97
           KI+VIG GNVG   A  +  +    EL L+D      +G+ LD+       L  TK+  S
Sbjct: 2   KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS 61

Query: 98  VDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV 157
            DYA TA SD+ I+TAG  +  G +R +LL +N  + K +   ++K+S + I+++V+NP+
Sbjct: 62  NDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPL 121

Query: 158 DILTYVAWKLSGLPSNRVIG 177
           DI+T+VAW  SGLP  RVIG
Sbjct: 122 DIMTHVAWVRSGLPKERVIG 141

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score =  137 bits (345), Expect = 4e-40
 Identities = 57/169 (33%), Positives = 96/169 (56%), Gaps = 2/169 (1%)

Query: 180 TNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAY 239
           T LDS RFR+LL++ L V+ ++V  YI+GEHGDS + LWS   + G  I  +++  +  +
Sbjct: 1   TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNF 60

Query: 240 EKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYG 299
            +E  + I ++V  +   +I  KG T + I  S   +  +++++Q  I  V  +  G YG
Sbjct: 61  TEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYG 120

Query: 300 IDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348
           I+  DV +SLP+ +   GV  V   +L  EE   LR SA+ + +V +++
Sbjct: 121 IE--DVAISLPSIVNSEGVQEVLQFNLTPEEEEALRFSAEQVKKVLNEV 167

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  136 bits (343), Expect = 4e-40
 Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 4/143 (2%)

Query: 38  TKISVIG-TGNVGMAIAQTILTQDFVEELALVD--AKADKLRGEMLDLQHAAAFLPRTKI 94
           TK+SV+G  G VG A    I  +D  +E+  VD   K D   G+  D  H  A+   T++
Sbjct: 1   TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRV 60

Query: 95  LASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154
                Y  TAGSD+ ++TAG  +  G++R++L   N  + + I   L +++ D I L  +
Sbjct: 61  RQG-GYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119

Query: 155 NPVDILTYVAWKLSGLPSNRVIG 177
           NPVD+L    ++       +VIG
Sbjct: 120 NPVDLLNRHLYEAGDRSREQVIG 142

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score =  135 bits (342), Expect = 6e-40
 Identities = 41/144 (28%), Positives = 77/144 (53%), Gaps = 4/144 (2%)

Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
           KI +IG GNVG A+A  ++ Q   ++   +DA   K++ + +D Q A A L     +   
Sbjct: 3   KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIN 62

Query: 99  DYAVTAGSDLCIVTAGA----RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA 154
           D+A  A +D+ I T G     +      R   L+   S+ +++   L +     +L++++
Sbjct: 63  DWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122

Query: 155 NPVDILTYVAWKLSGLPSNRVIGS 178
           NPVD++T +   ++G P+++VIG+
Sbjct: 123 NPVDVITALFQHVTGFPAHKVIGT 146

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score =  135 bits (342), Expect = 6e-40
 Identities = 55/141 (39%), Positives = 88/141 (62%), Gaps = 1/141 (0%)

Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
           K+++IG G VG + A T+  +    EL L+D   +K  GE +D+ H   F+ +  + A  
Sbjct: 3   KVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG- 61

Query: 99  DYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD 158
           DY+     D+ +VTAGA +  GE+RL+L ++N+ + K +   ++KY    ++L+V+NPVD
Sbjct: 62  DYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD 121

Query: 159 ILTYVAWKLSGLPSNRVIGSG 179
           I+TY+  K SGLP  +VIGSG
Sbjct: 122 IITYMIQKWSGLPVGKVIGSG 142

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score =  134 bits (339), Expect = 1e-39
 Identities = 61/140 (43%), Positives = 81/140 (57%), Gaps = 1/140 (0%)

Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV 98
           KI ++G G VG + A  +L + F  E+ L+D    +  G+ LDL H   F  R  I A  
Sbjct: 2   KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG- 60

Query: 99  DYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD 158
           DYA   GSD+ IV AG  Q  GE+RL LL RN  + K I   + KY+PD I+++V NPVD
Sbjct: 61  DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120

Query: 159 ILTYVAWKLSGLPSNRVIGS 178
           +LTY   K SG+   +V GS
Sbjct: 121 VLTYFFLKESGMDPRKVFGS 140

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  134 bits (337), Expect = 3e-39
 Identities = 57/140 (40%), Positives = 84/140 (60%), Gaps = 1/140 (0%)

Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKILAS 97
           K+  +G G VG   A T L    V+E+ALVD   D   GE +DL HAAA +    KI+  
Sbjct: 2   KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG 61

Query: 98  VDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV 157
            DY++  GS++ +VTAG  +  G +RL+L  +N  + K I   +V+ +P+  +L+V NP+
Sbjct: 62  ADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPM 121

Query: 158 DILTYVAWKLSGLPSNRVIG 177
           D++TY+ WK SG P N V G
Sbjct: 122 DVMTYIMWKESGKPRNEVFG 141

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score =  133 bits (336), Expect = 6e-39
 Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 8/154 (5%)

Query: 31  PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP 90
           P+  +R  K+++IG+G +G  +      ++  + + L D       G+ LDL H  + + 
Sbjct: 1   PALVQRRKKVAMIGSGMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVVD 59

Query: 91  RTKILASVD--YAVTAGSDLCIVTAGARQIAGES-----RLNLLQRNLSLFKAIIPPLVK 143
               + +     A   G+D  IVTAG  ++ G+      R +LL  N  + + I   + K
Sbjct: 60  TNVSVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKK 119

Query: 144 YSPDCILLIVANPVDILTYVAWKLSGLPSNRVIG 177
           Y P   +++V NP+D +  V  + SG+P+N + G
Sbjct: 120 YCPKTFIIVVTNPLDCMVKVMCEASGVPTNMICG 153

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score =  129 bits (324), Expect = 3e-37
 Identities = 49/140 (35%), Positives = 82/140 (58%), Gaps = 2/140 (1%)

Query: 39  KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKILAS 97
           KIS+IG G VG   A  +  ++  + + L+D      +G+ LDL  A+       ++  +
Sbjct: 3   KISIIGAGFVGSTTAHWLAAKELGDIV-LLDIVEGVPQGKALDLYEASPIEGFDVRVTGT 61

Query: 98  VDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV 157
            +YA TA SD+ +VT+GA +  G SR +L++ N  + +A I      SP+ ++++V NP+
Sbjct: 62  NNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPL 121

Query: 158 DILTYVAWKLSGLPSNRVIG 177
           D +TY+A ++SG P  RVIG
Sbjct: 122 DAMTYLAAEVSGFPKERVIG 141

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

 Score =  129 bits (326), Expect = 3e-37
 Identities = 73/171 (42%), Positives = 110/171 (64%), Gaps = 4/171 (2%)

Query: 178 SGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQI 237
           SG NLDS+RFR+L+ + L V++     +++GEHGDS  ++WS ++V  + +       + 
Sbjct: 1   SGCNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNK- 59

Query: 238 AYEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGF 297
             +K+  + +HK+VVDSAYEVI LKGYTSWAIG S A+LA +I+++  ++HPVS + K F
Sbjct: 60  --DKQDWKKLHKDVVDSAYEVIKLKGYTSWAIGLSVADLAETIMKNLCRVHPVSTMVKDF 117

Query: 298 YGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348
           YGI    VFLSLP  L   G+  +  + L   E  +L+ SA T+ ++Q  L
Sbjct: 118 YGIKDN-VFLSLPCVLNDHGISNIVKMKLKPNEEQQLQKSATTLWDIQKDL 167

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  128 bits (323), Expect = 4e-37
 Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 7/148 (4%)

Query: 38  TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKILA 96
            KI ++G+G +G  +A  I+ ++ + ++ L D   +   G+ LD  H         K+  
Sbjct: 4   AKIVLVGSGMIGGVMATLIVQKN-LGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 62

Query: 97  SVDYAVTAGSDLCIVTAGARQIAGES-----RLNLLQRNLSLFKAIIPPLVKYSPDCILL 151
           S  Y   AG+D+ IVTAG  +  G+S     R +LL  N  +   I   + K  P+  ++
Sbjct: 63  SNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 122

Query: 152 IVANPVDILTYVAWKLSGLPSNRVIGSG 179
           +V NPVD++  +  + SG+P N++IG G
Sbjct: 123 VVTNPVDVMVQLLHQHSGVPKNKIIGLG 150

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score =  124 bits (311), Expect = 5e-35
 Identities = 57/167 (34%), Positives = 104/167 (62%), Gaps = 3/167 (1%)

Query: 180 TNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAY 239
           T+LD++RFR  +A+ ++V+A+ V AYI+GEHGD+   +WS  ++GGV I  +++      
Sbjct: 1   TSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHP-EI 59

Query: 240 EKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYG 299
           +++ L  + ++V D+AYE+I LKG T + I  + A ++++I+ D+  + P+SV   G YG
Sbjct: 60  KEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARISKAILNDENAVLPLSVYMDGQYG 119

Query: 300 IDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQS 346
           I+  D+++  PA + R G+  +  I L   E   ++ SA  + +V +
Sbjct: 120 IN--DLYIGTPAVINRNGIQNILEIPLTDHEEESMQKSASQLKKVLT 164

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score =  123 bits (310), Expect = 6e-35
 Identities = 47/169 (27%), Positives = 87/169 (51%), Gaps = 11/169 (6%)

Query: 182 LDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEK 241
           LD++R+R  +A    V+ +DVQA ++G HGD  V L    ++ G+P+  F+   ++    
Sbjct: 4   LDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFSTISGIPVSEFIAPDRL---- 59

Query: 242 ETLESIHKEVVDSAYEVISL--KGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYG 299
                I +       E+++L   G   +A   + A +  ++++D++++ PV+    G YG
Sbjct: 60  ---AQIVERTRKGGGEIVNLLKTGSAYYAPAAATAQMVEAVLKDKKRVMPVAAYLTGQYG 116

Query: 300 IDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348
           ++  D++  +P  LG GGV  +  + LN+EE   L  SAK +      L
Sbjct: 117 LN--DIYFGVPVILGAGGVEKILELPLNEEEMALLNASAKAVRATLDTL 163

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score =  123 bits (309), Expect = 7e-35
 Identities = 53/169 (31%), Positives = 90/169 (53%), Gaps = 11/169 (6%)

Query: 182 LDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEK 241
           LD++RFR  +A  L V+ QD+ A ++G HGD+ V +    +V G+PI   L         
Sbjct: 4   LDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVVKYTTVAGIPISDLL-------PA 56

Query: 242 ETLESIHKEVVDSAYEVISL--KGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYG 299
           ET++ + +   +   E++    +G   +A   S   +  SI+ D++++ P +V  +G YG
Sbjct: 57  ETIDKLVERTRNGGAEIVEHLKQGSAFYAPASSVVEMVESIVLDRKRVLPCAVGLEGQYG 116

Query: 300 IDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348
           ID    F+ +P +LGR GV  +  I+L+Q +   L+ SAK + E    L
Sbjct: 117 ID--KTFVGVPVKLGRNGVEQIYEINLDQADLDLLQKSAKIVDENCKML 163

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score =  123 bits (308), Expect = 1e-34
 Identities = 53/167 (31%), Positives = 99/167 (59%), Gaps = 4/167 (2%)

Query: 180 TNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAY 239
           T+LDSSR R  L    +V+ + V AYI+GEHGDS  A +S+ ++G  P+    ++Q ++ 
Sbjct: 1   TSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGDSEFAAYSTATIGTRPVRDVAKEQGVSD 60

Query: 240 EKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYG 299
           +      +   V + AY++I+LKG T + IG +   ++++I+RD+  + PV     G YG
Sbjct: 61  DDLA--KLEDGVRNKAYDIINLKGATFYGIGTALMRISKAILRDENAVLPVGAYMDGQYG 118

Query: 300 IDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQS 346
           ++  D+++  PA +G  G+  +    L+ +E  ++++SA T+ +V +
Sbjct: 119 LN--DIYIGTPAIIGGTGLKQIIESPLSADELKKMQDSAATLKKVLN 163

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score =  122 bits (307), Expect = 2e-34
 Identities = 56/170 (32%), Positives = 99/170 (58%), Gaps = 3/170 (1%)

Query: 179 GTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIA 238
           GT LD++R R L+A H   + + V  Y++GEHGDS V +WS   +GG+P L  + +    
Sbjct: 1   GTVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGAMIGGIP-LQNMCQVCQK 59

Query: 239 YEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFY 298
            + + LE+  ++   +AYE+I  KG T +AI  + A++  SI  D++++  +SV  + + 
Sbjct: 60  CDSKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVESIFFDEKRVLTLSVYLEDYL 119

Query: 299 GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348
           G+   D+ +S+P  LG+ GV  +  ++LN+EE    R SA  +    +++
Sbjct: 120 GVK--DLCISVPVTLGKHGVERILELNLNEEELEAFRKSASILKNAINEI 167

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  119 bits (300), Expect = 1e-33
 Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 7/145 (4%)

Query: 39  KISVIG-TGNVGMAIAQTILTQD-FVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA 96
           K++V+G  G +G A+A  + TQ     EL+L D  A    G  +DL H    +       
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDI-APVTPGVAVDLSHIPTAVKIKGFSG 60

Query: 97  SVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP 156
                   G+D+ +++AG R+  G  R +L   N  + K ++  + K  P   + I+ NP
Sbjct: 61  EDATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 157 VDILTYVAW----KLSGLPSNRVIG 177
           V+    +A     K      N++ G
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFG 145

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score =  118 bits (296), Expect = 5e-33
 Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 11/170 (6%)

Query: 179 GTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIA 238
           GT LD++R +  + +  D++ + V  Y +GEHG+S    WS++ V G PI++  +   I 
Sbjct: 1   GTLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGNSQFVAWSTVRVMGQPIVTLADAGDID 60

Query: 239 YEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFY 298
                   I +E     + V++ KGYTS+ +  SA  +A++++ D      VS       
Sbjct: 61  LAA-----IEEEARKGGFTVLNGKGYTSYGVATSAIRIAKAVMADAHAELVVS------N 109

Query: 299 GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348
             D   ++LS PA +GR GVL  T + L  +E  +L  S   I +   ++
Sbjct: 110 RRDDMGMYLSYPAIIGRDGVLAETTLDLTTDEQEKLLQSRDYIQQRFDEI 159

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  118 bits (296), Expect = 7e-33
 Identities = 52/171 (30%), Positives = 98/171 (57%), Gaps = 8/171 (4%)

Query: 179 GTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIA 238
           GT+LDS RF+  +A    V+  +V+  I+GEHGDS V L S+ S+GG+PI     ++   
Sbjct: 2   GTHLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGDSMVPLLSATSIGGIPI-----QKFER 56

Query: 239 YEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSV-LAKGF 297
           +++  ++ I ++V     ++I LKG + +    +  N+ R I+ +++++  +S  +   F
Sbjct: 57  FKELPIDEIIEDVKTKGEQIIRLKGGSEFGPAAAILNVVRCIVNNEKRLLTLSAYVDGEF 116

Query: 298 YGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348
            GI   DV + +P ++GR G+  V +I L+++E    R SA+ I +   ++
Sbjct: 117 DGIR--DVCIGVPVKIGRDGIEEVVSIELDKDEIIAFRKSAEIIKKYCEEV 165

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  117 bits (295), Expect = 1e-32
 Identities = 26/168 (15%), Positives = 54/168 (32%), Gaps = 16/168 (9%)

Query: 180 TNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAY 239
           T LD  R    +A+   ++   V   ++G H   ++    S     V             
Sbjct: 2   TTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDF----------- 50

Query: 240 EKETLESIHKEVVDSAYEVISLKGYTSWAIG---YSAANLARSIIRDQRKIHPVSVLAKG 296
            ++ L ++   + ++  EV+  K     A     Y+ A    S++        V   +  
Sbjct: 51  PQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFV 110

Query: 297 FYGIDGGDVFLSLPAQLGRGGVLGVTNI-HLNQEESHRLRNSAKTILE 343
                    + S P  LG+ G+     I  ++  E   +  +   +  
Sbjct: 111 KSQET-DCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKA 157

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score =  117 bits (293), Expect = 2e-32
 Identities = 54/170 (31%), Positives = 88/170 (51%), Gaps = 2/170 (1%)

Query: 179 GTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIA 238
              LDS RFR  +AD L V+ +DVQA ++G HGD  V L   I+V G PI  F++   + 
Sbjct: 1   ACMLDSGRFRRYVADALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVT 60

Query: 239 YEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFY 298
            ++    + H +V          +G   +A   SA  +A S + D++++ P SV   G Y
Sbjct: 61  EKQLEEIAEHTKVSGGEIVRFLGQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEY 120

Query: 299 GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348
           G+   D+F+ LPA +G  G+  V  + LN+EE  + + S   ++ +   +
Sbjct: 121 GLK--DMFIGLPAVIGGAGIERVIELELNEEEKKQFQKSVDDVMALNKAV 168

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  116 bits (292), Expect = 2e-32
 Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 4/165 (2%)

Query: 182 LDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEK 241
           LD+SR ++ ++  L+V  +DV A+IVG HG+  V L   I+VGG+P+  F+  +      
Sbjct: 3   LDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL--ISD 60

Query: 242 ETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGID 301
             LE+I    V++A E+++L      A   +   +A S ++D +K+   S L +G YG  
Sbjct: 61  AELEAIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHS 120

Query: 302 GGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQS 346
             D+F   P  LG  GV  V  + LN EE  +   +      +++
Sbjct: 121 --DIFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIAETKRMKA 163

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  114 bits (287), Expect = 1e-31
 Identities = 63/168 (37%), Positives = 98/168 (58%), Gaps = 3/168 (1%)

Query: 180 TNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAY 239
           T LD++RFRFLL ++  V  Q+V AYI+GEHGD+ + +WS   +G +PI   +E +    
Sbjct: 1   TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEA 60

Query: 240 EKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYG 299
           +K+  E I   V D+AY++I  KG T + I    A + R+I+ ++  I  VS    G YG
Sbjct: 61  QKDL-ERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYG 119

Query: 300 IDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQ 347
               DV++ +PA + R G+  V  I LN +E +R  +SA T+  V ++
Sbjct: 120 ER--DVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAATLKSVLAR 165

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  114 bits (286), Expect = 1e-31
 Identities = 47/170 (27%), Positives = 86/170 (50%), Gaps = 11/170 (6%)

Query: 179 GTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIA 238
           G  LDS+RFR++L++  D   Q+V+  I+GEHGD+ V ++S +SV               
Sbjct: 2   GGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFSKVSVD---------GTDPE 52

Query: 239 YEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFY 298
           +  +  E +  ++ +SA +VI  KG T W      A++  +I+ D  ++ P SV  +G +
Sbjct: 53  FSGDEKEQLLGDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEF 112

Query: 299 GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQSQL 348
           G +  D    +P  LG  GV  +    L+  E   + ++A+ + +   ++
Sbjct: 113 GHE--DTAFGVPVSLGSNGVEEIVEWDLDDYEQDLMADAAEKLSDQYDKI 160

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  113 bits (284), Expect = 5e-31
 Identities = 30/168 (17%), Positives = 56/168 (33%), Gaps = 5/168 (2%)

Query: 180 TNLDSSRFRFLLADHLDVNAQDVQAYIV-GEHGDSSVALWSSISVGGVPILSFLEKQQIA 238
           T LD +R +  +A  L V + DV+  I+ G H  +     +   V           + + 
Sbjct: 1   TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAK-EVGVYEAVK 59

Query: 239 YEKETLESIHKEVVDSAYEVISLKGYTSW-AIGYSAANLARSIIRDQRKIHPVSVLAKGF 297
            +          V      VI  +  +S  +   +  +  R I     +   VS+     
Sbjct: 60  DDSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISD 119

Query: 298 YGIDGG--DVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILE 343
               G   D+  S P  +       V  + +N     ++  +AK + E
Sbjct: 120 GNSYGVPDDLLYSFPVTIKDKTWKIVEGLPINDFSREKMDLTAKELAE 167

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  110 bits (275), Expect = 4e-30
 Identities = 31/145 (21%), Positives = 58/145 (40%), Gaps = 8/145 (5%)

Query: 39  KISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS 97
           K++V+G +G +G  ++  +     V  L L D       G   DL H          L  
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATVKGYLGP 59

Query: 98  VD-YAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP 156
                   G D+ ++ AG  +  G +R +L   N ++   +     ++ PD ++ I++NP
Sbjct: 60  EQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP 119

Query: 157 VDILTYVAW----KLSGLPSNRVIG 177
           V+    +      K      N++ G
Sbjct: 120 VNSTIPITAEVFKKHGVYNPNKIFG 144

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score =  110 bits (277), Expect = 6e-30
 Identities = 28/154 (18%), Positives = 53/154 (34%), Gaps = 10/154 (6%)

Query: 34  TKRHTKISVIG-TGNVGMAIAQTILTQDF-----VEELALVD--AKADKLRGEMLDLQHA 85
            K+   I+V G  G +   +   + + +         L L+        L G  ++L+ +
Sbjct: 21  WKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDS 80

Query: 86  AAFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS 145
              L R   +    Y V    D  ++     +  G  R  LL  N  +F      L   +
Sbjct: 81  LYPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVA 140

Query: 146 P-DCILLIVANPVDILTYVAWK-LSGLPSNRVIG 177
             +  +L+V NP +    +  K    +P+     
Sbjct: 141 SKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHA 174

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  110 bits (275), Expect = 7e-30
 Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 17/166 (10%)

Query: 180 TNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAY 239
           T LD  R    +A+       +V+  ++G H   ++    S   G               
Sbjct: 2   TTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVSF------------ 49

Query: 240 EKETLESIHKEVVDSAYEVISLK---GYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKG 296
            ++ +  + K + ++  EV+  K   G  + ++G +AA    S++R  +    V   A  
Sbjct: 50  TEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYV 109

Query: 297 FYGIDGGDVFLSLPAQLGRGGVLGVTNI-HLNQEESHRLRNSAKTI 341
                    F S P  LG+ GV    +I  L+  E + L     T+
Sbjct: 110 EGDGQYARFF-SQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTL 154

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score =  107 bits (268), Expect = 1e-28
 Identities = 37/170 (21%), Positives = 62/170 (36%), Gaps = 12/170 (7%)

Query: 180 TNLDSSRFRFLLADHLDVNAQDVQAYIV-GEHGDSSVALWSSISVGGVPILSFLEKQQIA 238
           T LD +R +  LA    V    V    + G H  + V  + +  + G P+     K+ I 
Sbjct: 1   TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPV-----KEVIK 55

Query: 239 YEKETLESIHKEVVDSAYEVISLKGYTSWA-IGYSAANLARSIIRDQRKIHPVSVLAK-- 295
             K   E     V      +I   G +S A    S A+  +S++    +    S      
Sbjct: 56  RTKWLEEEFTITVQKRGGALIQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTT 115

Query: 296 -GFYGIDGGDVFLSLPAQLGRGGVLG-VTNIHLNQEESHRLRNSAKTILE 343
              YGI   D+  S+P +    G     T++  +     R++ S   +L 
Sbjct: 116 GNPYGIA-EDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAELLA 164

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  105 bits (263), Expect = 2e-28
 Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 7/145 (4%)

Query: 39  KISVIG-TGNVGMAIAQTILTQDFVEELALVD-----AKADKLRGEMLDLQHAAAFLPRT 92
           K+++IG +G VG A A  +  + F+++L L+       K + LR ++ D           
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 93  KILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLI 152
            + +  +  +   SD+ I+T+G  +  G SR++L + N  +       + +      + +
Sbjct: 62  YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICD-TKIFV 120

Query: 153 VANPVDILTYVAWKLSGLPSNRVIG 177
           + NPVD++TY A   S    N+V G
Sbjct: 121 ITNPVDVMTYKALVDSKFERNQVFG 145

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score =  105 bits (262), Expect = 5e-28
 Identities = 32/152 (21%), Positives = 59/152 (38%), Gaps = 10/152 (6%)

Query: 35  KRHTKISVIG-TGNVGMAIAQTILTQD-------FVEELALVDAKADKLRGEMLDLQHAA 86
           K   +++V G  G +G ++   I   +        + +L  +      L G +++L+  A
Sbjct: 2   KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61

Query: 87  AFLPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSP 146
             L                +D  ++   A + AG  R +LLQ N  +F      L + + 
Sbjct: 62  FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121

Query: 147 -DCILLIVANPVDILTYVAWKL-SGLPSNRVI 176
            D  +L+V NP +    +A+K   GL      
Sbjct: 122 KDVKVLVVGNPANTNALIAYKNAPGLNPRNFT 153

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  103 bits (257), Expect = 4e-27
 Identities = 31/167 (18%), Positives = 51/167 (30%), Gaps = 30/167 (17%)

Query: 39  KISVIGTGNVGMAIAQTILTQDF----VEELALVDAKADKLRGEMLDLQHAAAF----LP 90
           KI+ IG G+         L + +    V EL LVD    K + E++            +P
Sbjct: 3   KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVP 62

Query: 91  RTKILASVDYAVTAGSDLCIVTAGARQ--------------------IAGESRLNLLQRN 130
               L         G+D                                G   L    R 
Sbjct: 63  IEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRT 122

Query: 131 LSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIG 177
           + +   II  + +  PD  L+   NP  ++T    + +     +V+G
Sbjct: 123 IPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYT--KQEKVVG 167

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  101 bits (252), Expect = 1e-26
 Identities = 29/149 (19%), Positives = 57/149 (38%), Gaps = 10/149 (6%)

Query: 39  KISVIG-TGNVGMAIAQTILTQ-----DFVEELALVDAKADKLRGEMLDLQH--AAAFLP 90
           ++ V G  G +  ++  +I        D    L L+D        + + ++    A  L 
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL 64

Query: 91  RTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCI- 149
           +  I    +       D+ I+     +  G  R +LL+ N+ +FK     L KY+   + 
Sbjct: 65  KDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVK 124

Query: 150 LLIVANPVDILTYVAWKLS-GLPSNRVIG 177
           +++V NP +     A K +  +P      
Sbjct: 125 VIVVGNPANTNCLTASKSAPSIPKENFSC 153

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

 Score =  101 bits (252), Expect = 2e-26
 Identities = 19/162 (11%), Positives = 41/162 (25%), Gaps = 26/162 (16%)

Query: 39  KISVIGTGNVGMAIAQTILTQDF----VEELALVDAKADKLRGEMLDLQHAAAFLPRTKI 94
           +I+VIG G+         L        ++E+   D   +K    ++D            +
Sbjct: 2   RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQ-KIVVDFVKRLVKDRFKVL 60

Query: 95  LASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAI----------------- 137
           ++         +   I       + G      +     L                     
Sbjct: 61  ISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIV 120

Query: 138 --IPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIG 177
                 V+ + +  ++   NP   +T            + IG
Sbjct: 121 EEYVDTVRKTSNATIVNFTNPSGHITEFVRNYL--EYEKFIG 160

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

 Score =  101 bits (252), Expect = 2e-26
 Identities = 24/165 (14%), Positives = 50/165 (30%), Gaps = 5/165 (3%)

Query: 182 LDSSRFRFLLADHLDVNAQDVQAYIV-GEHGDSSVALWSSISVGGVPILSFLEKQQIAYE 240
           LD +R    +A         ++   V G H  +  A +    + G  +   +       +
Sbjct: 3   LDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRD 62

Query: 241 KETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGI 300
                   +     A          + A   +  ++   ++    K   + + + G YGI
Sbjct: 63  TFLPTVGKRGA---AIIDARGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGI 119

Query: 301 DGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQ 345
               V    P     G    V  + ++     R+  +   +LE Q
Sbjct: 120 P-EGVIFGFPVTTENGEYKIVQGLSIDAFSQERINVTLNELLEEQ 163

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 99.5 bits (247), Expect = 1e-25
 Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 12/177 (6%)

Query: 180 TNLDSSRFRFLLADHLDVNAQDVQAYIV-GEHGDSSVALWSSISVGGVPILSFLEKQQIA 238
           T LD +R +  LA         ++   V G H  +         V G P L  ++ +   
Sbjct: 2   TRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYE 61

Query: 239 YEKETLESIHKEVVDSAYEVISLKGYTSWAIGYSAANLARSIIR--DQRKIHPVSVLAKG 296
                   I       A  + +    ++ +   +A    R       +     ++V ++G
Sbjct: 62  KVF-----IPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQG 116

Query: 297 FYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTILEVQ---SQLGI 350
            YGI  G V+ S P     G    V  + +N+    R+  +A+ +L+       LG+
Sbjct: 117 EYGIPEGIVY-SFPVTAKDGAYRVVEGLEINEFARKRMEITAQELLDEMEQVKALGL 172

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

 Score = 93.9 bits (233), Expect = 9e-24
 Identities = 24/168 (14%), Positives = 49/168 (29%), Gaps = 28/168 (16%)

Query: 35  KRHTKISVIGTGNVGMAIAQTILTQDFVE----ELALVDAKADKLRG--EMLDLQHAAAF 88
           K+   I + G G+        +L     E    +L L D   ++        D+      
Sbjct: 1   KKSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKA 60

Query: 89  LPRTKILASVDYAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSL--------------- 133
                   +         D  +      + A  +    +     +               
Sbjct: 61  PDIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGM 120

Query: 134 -----FKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVI 176
                   I+  + KYSPD  +L  +NP  I+     +L   P+++++
Sbjct: 121 RSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLR--PNSKIL 166

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

 Score = 91.0 bits (225), Expect = 1e-22
 Identities = 23/171 (13%), Positives = 47/171 (27%), Gaps = 35/171 (20%)

Query: 39  KISVIGTGNVG--MAIAQTILTQDF--VEELALVDAKADKLRGEMLDLQHAAAFL-PRTK 93
           KI +IG G+    + +   +          + L+D   ++L   +   +     +    K
Sbjct: 4   KIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLK 63

Query: 94  ILASVDY-------------------AVTAGSDLCIVTAGARQIAGESRLNL-------- 126
              +++                                 G  +       N+        
Sbjct: 64  FEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFS 123

Query: 127 LQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIG 177
               L  F  I   + K SP    L  ANP+   T +  +   +   + +G
Sbjct: 124 NYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLVTRTVPI---KAVG 171

>d1vjta1 c.2.1.5 (A:-1-191) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Putative alpha-glucosidase TM0752
species: Thermotoga maritima [TaxId: 2336]

 Score = 46.0 bits (108), Expect = 1e-06
 Identities = 30/183 (16%), Positives = 51/183 (27%), Gaps = 45/183 (24%)

Query: 37  HTKISVIGTGNVGMAIAQTILTQDFVE------ELALVDAKADKLRGEMLDLQH--AAAF 88
           H KIS+IG G+V  A+          E       + ++D    +L    +  +       
Sbjct: 2   HMKISIIGAGSVRFALQLVGDIAQTEELSREDTHIYMMDVHERRLNASYILARKYVEELN 61

Query: 89  LPRTKILASVDYAVTAGSDLCIVTA---GARQIAGESRLNLLQRNLSLFKAI-------- 137
            P   +  S       G+D  I TA     R     S+       +              
Sbjct: 62  SPVKIVKTSSLDEAIDGADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQE 121

Query: 138 ----------------IPPLV-------KYSPDCILLIVANPVDILTYVAWKLSGLPSNR 174
                           +   +       K +P   L+  ANPV  +T     +       
Sbjct: 122 LNMVSTYTYVLSSYPDMKLALEIAEKMKKMAPKAYLMQTANPVFEIT---QAVRRWTGAN 178

Query: 175 VIG 177
           ++G
Sbjct: 179 IVG 181

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	350
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	100.0
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	100.0
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	100.0
d1llda2	170	Lactate dehydrogenase {Bifidobacterium longum, str	100.0
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	100.0
d1i0za2	172	Lactate dehydrogenase {Human (Homo sapiens), heart	100.0
d1y6ja2	169	Lactate dehydrogenase {Clostridium thermocellum [T	100.0
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	100.0
d1ojua2	152	Lactate dehydrogenase {Archaeon Archaeoglobus fulg	100.0
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	100.0
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	100.0
d1pzga2	174	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	100.0
d1a5za2	172	Lactate dehydrogenase {Thermotoga maritima [TaxId:	100.0
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	100.0
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	100.0
d2ldxa2	172	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	100.0
d1ez4a2	171	Lactate dehydrogenase {Lactobacillus pentosus [Tax	100.0
d1uxja2	164	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	100.0
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	100.0
d1ldma2	169	Lactate dehydrogenase {Dogfish (Squalus acanthias)	100.0
d1guza2	163	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	100.0
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	100.0
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	100.0
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	100.0
d1hyea2	168	MJ0490, lactate/malate dehydrogenase {Archaeon Met	100.0
d7mdha2	188	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	100.0
d5mdha2	179	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	100.0
d1ldna2	168	Lactate dehydrogenase {Bacillus stearothermophilus	100.0
d1t2da2	165	Lactate dehydrogenase {Malaria parasite (Plasmodiu	100.0
d1hyha2	163	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	100.0
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	100.0
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	100.0
d1llca2	172	Lactate dehydrogenase {Lactobacillus casei [TaxId:	99.98
d1y7ta2	173	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.98
d1o6za2	161	Malate dehydrogenase {Archaeon Haloarcula marismor	99.97
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	99.97
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.97
d1b8pa2	171	Malate dehydrogenase {Aquaspirillum arcticum [TaxI	99.96
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.95
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.95
d1mlda2	169	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.95
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.95
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	99.95
d2cmda2	167	Malate dehydrogenase {Escherichia coli [TaxId: 562	99.95
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	99.95
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	99.94
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	99.93
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	99.69
d1up7a2	253	6-phospho-beta-glucosidase {Thermotoga maritima [T	99.38
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.32
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	99.31
d1s6ya2	270	6-phospho-beta-glucosidase {Bacillus stearothermop	99.31
d1u8xx2	276	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	99.29
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	99.1
d1obba2	308	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	99.09
d1vjta2	278	Putative alpha-glucosidase TM0752 {Thermotoga mari	98.99
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.84
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.84
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.67
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.62
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.61
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.6
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	98.53
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.51
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.39
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.35
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	98.25
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	98.25
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	98.21
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	98.06
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	98.03
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	98.0
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.99
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.98
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.95
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.88
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.78
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.64
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.63
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	97.52
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.52
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.52
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.51
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.41
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.39
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.38
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	97.34
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.23
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	97.22
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.18
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.16
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.14
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.07
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	97.07
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.06
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.04
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	97.02
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.99
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	96.96
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.96
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	96.95
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.95
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.92
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	96.91
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	96.9
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.88
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.87
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.8
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	96.79
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.78
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	96.75
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.75
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	96.72
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.67
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	96.66
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.63
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	96.61
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.6
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	96.59
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	96.59
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	96.58
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	96.57
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.57
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.54
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	96.51
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	96.49
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.47
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	96.47
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	96.47
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.45
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.44
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.43
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	96.42
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.4
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	96.38
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	96.38
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	96.37
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	96.35
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	96.35
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.32
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.32
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	96.29
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.29
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.29
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.25
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	96.23
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	96.22
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.22
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	96.22
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	96.21
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	96.2
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	96.19
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	96.17
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.17
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.14
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	96.14
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.13
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	96.11
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.08
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	96.08
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.07
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	96.06
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.03
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.02
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	96.01
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	95.99
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	95.96
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.96
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.95
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.95
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	95.91
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	95.91
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.9
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.85
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	95.82
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	95.82
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	95.79
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.79
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.77
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	95.72
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	95.71
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	95.69
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.63
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.56
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	95.53
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.51
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	95.48
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	95.47
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.45
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.41
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	95.41
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	95.37
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	95.37
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.33
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	95.3
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.29
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.28
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	95.22
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	95.21
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.19
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.14
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	95.1
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	95.08
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	95.06
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.02
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	95.0
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	94.95
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.86
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	94.85
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.84
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	94.84
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	94.82
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	94.81
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.8
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	94.77
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	94.75
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	94.67
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.58
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.54
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	94.49
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	94.39
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	94.36
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	94.34
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.3
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	94.29
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.26
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	94.25
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.22
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.19
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	94.18
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	94.12
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.1
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	94.05
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	94.01
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	93.99
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	93.94
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.84
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	93.82
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	93.82
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	93.77
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	93.75
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	93.52
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.48
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	93.34
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.24
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	93.23
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	93.22
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	93.2
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	93.2
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.14
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.08
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	93.02
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	92.98
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	92.92
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.92
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	92.91
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	92.88
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.87
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	92.75
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	92.71
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	92.68
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	92.59
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	92.57
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.5
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	92.47
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	92.44
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	92.39
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	92.36
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	92.33
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	92.23
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	92.07
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	92.05
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	92.01
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	91.87
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	91.86
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	91.8
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	91.64
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	91.6
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	91.3
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	91.29
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	91.13
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	90.93
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	90.88
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	90.8
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	90.59
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	90.58
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	90.54
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	90.5
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	90.47
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	90.42
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	90.4
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	90.32
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	90.15
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	90.15
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	90.05
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	89.85
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	89.8
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	89.77
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	89.75
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	89.3
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	89.29
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	89.12
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	89.01
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	88.99
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	88.94
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	88.92
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	88.88
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	88.87
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	88.87
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	88.83
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	88.76
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	88.63
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	88.48
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	88.46
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	88.3
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	88.27
d2qy9a2	211	GTPase domain of the signal recognition particle r	88.22
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	88.07
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	88.06
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.86
d1ls1a2	207	GTPase domain of the signal sequence recognition p	87.78
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	87.7
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	87.58
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	87.58
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	87.54
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	87.43
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.3
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	87.26
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	87.2
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	87.19
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	86.96
d1j8yf2	211	GTPase domain of the signal sequence recognition p	86.89
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	86.54
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	86.19
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	86.05
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	86.0
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	85.64
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	85.28
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	85.23
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	84.84
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	84.66
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	84.46
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	84.35
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	84.32
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	84.15
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	84.12
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	83.91
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	83.7
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	83.67
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	83.6
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.59
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	83.55
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	83.27
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	82.75
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	82.67
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	82.53
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	82.4
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.16
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	82.12
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	82.11
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.95
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	81.72
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	81.36
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.24
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	80.71
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	80.67
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	80.52
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	80.45
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	80.28
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	80.24
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	80.09

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=100.00  E-value=3.7e-37  Score=256.82  Aligned_cols=143  Identities=41%  Similarity=0.709  Sum_probs=136.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~  116 (350)
                      |.||+|||||+||+++|+.++.+++++||+|+|++++++++.++||+|+..+....++..+++++++++||+||+++|.+
T Consensus         1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~~   80 (143)
T d1llda1           1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPR   80 (143)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEecccc
Confidence            46999999999999999999999999999999999999999999999998777667777778899999999999999999


Q ss_pred             cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeec
Q 018760          117 QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSG  179 (350)
Q Consensus       117 ~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g  179 (350)
                      +++|++|++++..|+++++++++.|.+++|++++|++|||+|+||+++++.+|+|++||||+|
T Consensus        81 ~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvDvmt~~~~~~sg~p~~rViG~G  143 (143)
T d1llda1          81 QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVAQKLTGLPENQIFGSG  143 (143)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHTCCTTSEEECT
T ss_pred             cCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchHHHHHHHHHHHCCChhhccCCC
Confidence            999999999999999999999999999999999999999999999999999999999999986

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=2.9e-36  Score=251.31  Aligned_cols=141  Identities=40%  Similarity=0.656  Sum_probs=134.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEEEEecCCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiVIi~~g~~  116 (350)
                      |||+|||||+||+++|+.|+.+++++||+|+|++++++++.++||+|+.++. ...++..++|++++++||+||+++|.|
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adiVvitag~~   80 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccEEEEecccc
Confidence            7999999999999999999999999999999999999999999999987644 346788888999999999999999999


Q ss_pred             cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          117 QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       117 ~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                      ++||++|.+++.+|++++++++++|.++||+++++++|||+|++|+++++++|+|++||||+
T Consensus        81 ~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~~~k~sg~p~~rViG~  142 (142)
T d1ojua1          81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIMWKESGKPRNEVFGM  142 (142)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHHHHHSCCCTTSEEEC
T ss_pred             CCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCChHHHHHHHHHHHCCChhcEecC
Confidence            99999999999999999999999999999999999999999999999999999999999996

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=2.1e-36  Score=254.21  Aligned_cols=145  Identities=38%  Similarity=0.717  Sum_probs=134.7

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCC-CceEEEcCCccccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKILASVDYAVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~-~~~v~~t~~~~al~~aDiVIi~  112 (350)
                      +....||+|||||.||+++|+.|+..++++||+|+|++++++++.++||+|+..+.. ..++ .++++++++|||+||++
T Consensus         3 ~~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~-~~~d~~~l~daDvvvit   81 (148)
T d1ldna1           3 NNGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDI-WHGDYDDCRDADLVVIC   81 (148)
T ss_dssp             TTTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEE-EECCGGGTTTCSEEEEC
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEE-EECCHHHhccceeEEEe
Confidence            344579999999999999999999999999999999999999999999999876543 3444 46789999999999999


Q ss_pred             cCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeec
Q 018760          113 AGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSG  179 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g  179 (350)
                      +|.+++++++|.+++.+|+++++++++.|.++||+++++++|||+|++|+++++++|+|++||||+|
T Consensus        82 ag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~~t~~~~k~sg~p~~rViG~G  148 (148)
T d1ldna1          82 AGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSG  148 (148)
T ss_dssp             CSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHHHHHTCCGGGEEECT
T ss_pred             cccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHHHHHHHHHHHCcChhheecCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999986

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=100.00  E-value=5.9e-36  Score=257.31  Aligned_cols=169  Identities=41%  Similarity=0.705  Sum_probs=158.8

Q ss_pred             CCccHHHHHHHHHHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhh-ccCCHHHHHHHHHHHHhhHHHH
Q 018760          180 TNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQ-IAYEKETLESIHKEVVDSAYEV  258 (350)
Q Consensus       180 ~~ld~~r~~~~la~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~-~~~~~~~~~~i~~~v~~~~~~v  258 (350)
                      |.||++|++++||+++|++|++|+++||||||++++|+||+++|+|.|+.+++.... .+++.+..+++.++++.++++|
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~g~~i   80 (170)
T d1llda2           1 TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKI   80 (170)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBSSSTTCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEcCCCCCcccchhhcccCCCchhhhcccccccccchhhHHHHHHHHhhhhhHH
Confidence            679999999999999999999999999999999999999999999999998775322 2467788889999999999999


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHH
Q 018760          259 ISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA  338 (350)
Q Consensus       259 ~~~kg~~~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa  338 (350)
                      ++.||+++|++|.++++++.+++++...+++++++.+|+||.+  ++|||+||++|++||+.+.+++|+++|+++|++|+
T Consensus        81 ~~~kg~t~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~--~i~~s~P~~lg~~Gv~~i~~l~L~~~E~~~l~~sa  158 (170)
T d1llda2          81 INGKGATNYAIGMSGVDIIEAVLHDTNRILPVSSMLKDFHGIS--DICMSVPTLLNRQGVNNTINTPVSDKELAALKRSA  158 (170)
T ss_dssp             HTSCCSCCHHHHHHHHHHHHHHHTTCCEEEEEEEECSSBTTBC--SSEEEEEEEEETTEEECCSCCCCCHHHHHHHHHHH
T ss_pred             HhhhccchhhhHHHHHHHHHHHHcCCCceeeeeccccCccCCC--CeeEeeccEEcCCeeEEEecCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999985  79999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 018760          339 KTILEVQSQLGI  350 (350)
Q Consensus       339 ~~i~~~~~~~~~  350 (350)
                      +.||+.+++|++
T Consensus       159 ~~lk~~~~~lg~  170 (170)
T d1llda2         159 ETLKETAAQFGF  170 (170)
T ss_dssp             HHHHHHHHTTTC
T ss_pred             HHHHHHHHHhCc
Confidence            999999999985

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1e-35  Score=247.66  Aligned_cols=140  Identities=43%  Similarity=0.713  Sum_probs=132.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCCc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQ  117 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~~  117 (350)
                      |||+|||||+||+++++.|+.+++++||+|+|++++++++.++|++|..++.....+. ++++++++|||+||+++|.++
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~-~~~~~~~~~adivvitag~~~   79 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIY-AGDYADLKGSDVVIVAAGVPQ   79 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEE-ECCGGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccccccccccccc-CCcHHHhcCCCEEEEeccccc
Confidence            7999999999999999999999999999999999999999999999988765555554 567899999999999999999


Q ss_pred             CccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          118 IAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       118 ~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                      ++|++|.+++.+|+++++++++.|.++||++|++++|||+|++|++++|.+|+|++||||+
T Consensus        80 ~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPvd~~t~~~~k~sg~p~~rViGt  140 (140)
T d1a5za1          80 KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS  140 (140)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             CCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHHHHHHCcCccceeCc
Confidence            9999999999999999999999999999999999999999999999999999999999985

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=100.00  E-value=7.5e-36  Score=257.03  Aligned_cols=170  Identities=46%  Similarity=0.831  Sum_probs=157.6

Q ss_pred             ecCCccHHHHHHHHHHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHH
Q 018760          178 SGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYE  257 (350)
Q Consensus       178 ~g~~ld~~r~~~~la~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~  257 (350)
                      +||.||++|++++||+++|++|++|+++||||||++++|+||+++|+|.|+.+++.+.....+.+.++++.++++.++.+
T Consensus         1 ~GT~LDs~R~~~~lA~~lgv~~~~V~~~ViG~Hg~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   80 (172)
T d1i0za2           1 SGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYE   80 (172)
T ss_dssp             CTTHHHHHHHHHHHHHHHTSCGGGCBCCEEBCSSTTCEECGGGCEETTEEHHHHCTTTTSSSCSSCTHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHhCcCHHHceEEEEccCCCcccccHhhceeCCeeHHHhhhhhccchhHHHHHHHHHHhccceEE
Confidence            48999999999999999999999999999999999999999999999999998876543333445567888889999999


Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHH
Q 018760          258 VISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNS  337 (350)
Q Consensus       258 v~~~kg~~~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~s  337 (350)
                      ++..++++.|++|.++++++.+++.+.+.++|++++++|+||++ +++|||+||++|++||+.+.+++|+++|+++|++|
T Consensus        81 ~~~~~~~s~~a~a~~~~~~~~~~~~~~~~v~~~~~~~~g~YGi~-~~i~~s~Pv~lg~~Gv~~v~~l~L~~~E~~~l~~S  159 (172)
T d1i0za2          81 VIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIE-NEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKS  159 (172)
T ss_dssp             HHHHHSSCCHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSTTCC-SCCEEEEEEEEETTEEEEECCCCCCHHHHHHHHHH
T ss_pred             eeecccccchHHHHHHHHHHHHHhcCCCcccccceeccCcCCCc-CCEEEEEEEEecCCcEEEEeCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998 58999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 018760          338 AKTILEVQSQL  348 (350)
Q Consensus       338 a~~i~~~~~~~  348 (350)
                      ++.|++.++.+
T Consensus       160 a~~l~~~~~~l  170 (172)
T d1i0za2         160 ADTLWDIQKDL  170 (172)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHHh
Confidence            99999998865

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=100.00  E-value=7.3e-36  Score=256.52  Aligned_cols=168  Identities=34%  Similarity=0.618  Sum_probs=151.5

Q ss_pred             CCccHHHHHHHHHHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHH
Q 018760          180 TNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVI  259 (350)
Q Consensus       180 ~~ld~~r~~~~la~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~  259 (350)
                      |.||++|+++++|+++|++|++|+++||||||++++|+||+++++|.|+.+++.+....++.+.++++.++++..+++++
T Consensus         1 T~LDs~R~~~~la~~lgv~~~~V~~~ViG~Hg~t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (169)
T d1y6ja2           1 TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATII   80 (169)
T ss_dssp             THHHHHHHHHHHHTTTTCCTTTEECCEEBCSSSSCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHceEEEEccCCCCCccCeeecccCchhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhh
Confidence            57999999999999999999999999999999999999999999999999988765445666777889999999999999


Q ss_pred             HhcCCcchHHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHH
Q 018760          260 SLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAK  339 (350)
Q Consensus       260 ~~kg~~~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~  339 (350)
                      +.++++.|++|.++++++.+++.+.+.++|++++.+|+||++  ++|||+||++|++||+.+.+++|+++|+++|++|++
T Consensus        81 ~~~~s~~~a~a~~~~~~~~~i~~~~~~~~~~~~~~~g~yg~~--~i~~s~Pv~lg~~Gv~~i~~l~Ls~~E~~~l~~s~~  158 (169)
T d1y6ja2          81 KNKGATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYGIE--DVAISLPSIVNSEGVQEVLQFNLTPEEEEALRFSAE  158 (169)
T ss_dssp             HHTSCCCHHHHHHHHHHHHHHHHTCCCEECCEEEECSBTTBC--SEEEECCEEEETTEEEECCCCCCCHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHHHHHhccCCCCceeeeeeeccccCCc--ccceeeeeEEcCCcEEEEecCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999996  799999999999999999999999999999999999


Q ss_pred             HHHHHHHHhC
Q 018760          340 TILEVQSQLG  349 (350)
Q Consensus       340 ~i~~~~~~~~  349 (350)
                      .|++.++++.
T Consensus       159 ~lk~~~~~vk  168 (169)
T d1y6ja2         159 QVKKVLNEVK  168 (169)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHHhh
Confidence            9999999864

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=100.00  E-value=1.3e-35  Score=251.39  Aligned_cols=153  Identities=60%  Similarity=0.963  Sum_probs=141.5

Q ss_pred             ccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccC
Q 018760           25 INHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTA  104 (350)
Q Consensus        25 ~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~  104 (350)
                      +.+..+++...++.||+|||+|.||+++|+.|+..++++||+|+|+++++++++++||+|...+.....+..+.++++++
T Consensus         8 ~~~~~~~~~~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~   87 (160)
T d1i0za1           8 IAPVAEEEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTA   87 (160)
T ss_dssp             CCCSSCSCCCCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGT
T ss_pred             ccCcCcccccCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcc
Confidence            44555566777788999999999999999999999999999999999999999999999987655555666677899999


Q ss_pred             CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEee
Q 018760          105 GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIG  177 (350)
Q Consensus       105 ~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG  177 (350)
                      +||+||+++|.++++|++|++++.+|+++++++++.|.+++|++++|++|||+|++|+++++.+|+|++||||
T Consensus        88 ~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPvDv~t~~~~k~sglp~~rViG  160 (160)
T d1i0za1          88 NSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHRVIG  160 (160)
T ss_dssp             TCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred             cccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchHHHHHHHHHHHCcCcccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=9.8e-36  Score=249.72  Aligned_cols=151  Identities=35%  Similarity=0.533  Sum_probs=139.0

Q ss_pred             cCCccHHHHHHHHHHHcCCCCcce-EEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHH
Q 018760          179 GTNLDSSRFRFLLADHLDVNAQDV-QAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYE  257 (350)
Q Consensus       179 g~~ld~~r~~~~la~~l~v~p~~v-~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~  257 (350)
                      ||.||++||++.|++...   .++ +++|+|+||+++||.||.++++|.+.               ++++.+++++++++
T Consensus         1 Gt~LDsaR~r~~l~~~~~---~~v~~a~ViGeHGds~vp~~S~~~i~g~~~---------------~~~i~~~v~~~g~e   62 (152)
T d1ojua2           1 GNQLDSQRLKERLYNAGA---RNIRRAWIIGEHGDSMFVAKSLADFDGEVD---------------WEAVENDVRFVAAE   62 (152)
T ss_dssp             SHHHHHHHHHHHHHHTTC---BSCCCCCEEBCSSTTCEECGGGCCCBSCCC---------------HHHHHHHHHTTHHH
T ss_pred             CCccHHHHHHHHHHccCC---CCcceeEEEecCCCccccccccccccCccc---------------hhHhHHHHHHHHHH
Confidence            789999999999987654   445 79999999999999999999988542               34677889999999


Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHH
Q 018760          258 VISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNS  337 (350)
Q Consensus       258 v~~~kg~~~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~s  337 (350)
                      |++.||+++|++|.++++++++|++|++.++|++++.+|+||+.  |+|+|+||+||++||+ +.+++|+++|+++|++|
T Consensus        63 Ii~~kG~t~~gia~a~~~iv~aIl~d~~~v~pvs~~l~geyG~~--dv~lsvP~vig~~Gve-i~~l~L~~~E~~~l~~S  139 (152)
T d1ojua2          63 VIKRKGATIFGPAVAIYRMVKAVVEDTGEIIPTSMILQGEYGIE--NVAVGVPAKLGKNGAE-VADIKLSDEEIEKLRNS  139 (152)
T ss_dssp             HHHHHSSCCHHHHHHHHHHHHHHHTTCCCEEEEEEEEESGGGCE--EEEEEEEEEEETTEEE-ECCCCCCHHHHHHHHHH
T ss_pred             hhhhccceeccHHHHHHHHHHHHHhcCCCceeeeEEeccccCCC--CEEEEeEEEECCCceE-EEcCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999995  7999999999999996 78999999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 018760          338 AKTILEVQSQLGI  350 (350)
Q Consensus       338 a~~i~~~~~~~~~  350 (350)
                      ++.||+.++++++
T Consensus       140 a~~ik~~i~~lg~  152 (152)
T d1ojua2         140 AKILRERLEELGY  152 (152)
T ss_dssp             HHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999999986

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=100.00  E-value=6.7e-36  Score=250.24  Aligned_cols=145  Identities=45%  Similarity=0.757  Sum_probs=125.2

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEec
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTA  113 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~  113 (350)
                      +.+.|||+|||+|+||+++|+.|+++++++||+|+|++++++++.++|++|+..+.....+ .++|++++++||+||+++
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~-~~~d~~~~~~adivvita   80 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKI-YSGEYSDCKDADLVVITA   80 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEE-EECCGGGGTTCSEEEECC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceE-eeccHHHhccccEEEEec
Confidence            4567899999999999999999999999999999999999999999999998765444444 467899999999999999


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeec
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSG  179 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g  179 (350)
                      |.|+++|++|.+++.+|+++++++++.|.++||+++++++|||+|++++++++.+|+|++||||+|
T Consensus        81 g~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~t~~~~k~sg~p~~rViG~G  146 (146)
T d1ez4a1          81 GAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGSG  146 (146)
T ss_dssp             CC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECT
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHHHHHHHHHHCcCccceecCC
Confidence            999999999999999999999999999999999999999999999999999999999999999986

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=100.00  E-value=8.7e-36  Score=248.49  Aligned_cols=141  Identities=38%  Similarity=0.662  Sum_probs=122.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCCc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQ  117 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~~  117 (350)
                      .||+|||||+||+++++.++.+++++||+|+|++++++++.++||+|+..+.....++ +.++++++|||+||+++|.++
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~-~~~~~~~~~adivvitag~~~   80 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY-AGDYSDVKDCDVIVVTAGANR   80 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC---CGGGGTTCSEEEECCCC--
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEe-eCcHHHhCCCceEEEeccccc
Confidence            5999999999999999999999999999999999999999999999987655444444 557899999999999999999


Q ss_pred             CccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeec
Q 018760          118 IAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSG  179 (350)
Q Consensus       118 ~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g  179 (350)
                      ++|++|.+++.+|++++++++++|.+++|+++++++|||+|++|+++++++|+|++||||+|
T Consensus        81 ~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvdv~t~~~~k~sg~p~~rViG~G  142 (142)
T d1y6ja1          81 KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGSG  142 (142)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHHHHHHTCCTTTEEECT
T ss_pred             CcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChHHHHHHHHHHHHCCCccceecCC
Confidence            99999999999999999999999999999999999999999999999999999999999986

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=4e-35  Score=253.04  Aligned_cols=166  Identities=34%  Similarity=0.579  Sum_probs=148.7

Q ss_pred             cCCccHHHHHHHHHHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHH
Q 018760          179 GTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEV  258 (350)
Q Consensus       179 g~~ld~~r~~~~la~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v  258 (350)
                      ||+||++|++++||+++|++|++|+++||||||++++|+||+++++|.|+.+++.+.  ........+.....+.++.++
T Consensus         1 ~c~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~t~vp~~S~~~i~g~~l~~~~~~~--~~~~~~~~~~~~~~~~~g~~~   78 (174)
T d1pzga2           1 ACMLDSGRFRRYVADALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDG--VVTEKQLEEIAEHTKVSGGEI   78 (174)
T ss_dssp             CHHHHHHHHHHHHHHHHTSCGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHTT--SSCHHHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHhCcCHHHcEEEEEccCCCccccceeeeeECCEechhhcccc--chhhhhhhhhhheeeccceeE
Confidence            799999999999999999999999999999999999999999999999998877553  244555556665556666555


Q ss_pred             H--HhcCCcchHHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHH
Q 018760          259 I--SLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN  336 (350)
Q Consensus       259 ~--~~kg~~~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~  336 (350)
                      .  +.+|++.|++|.++++++++++++++.+++++++.+|+||++  ++|||+||+||++||+.+.+++|+++|+++|++
T Consensus        79 ~~~~~~gst~~~~a~a~~~~~~~i~~~~~~~~~~s~~~~~~yGi~--~v~~s~Pv~ig~~Gi~~v~~l~l~~~E~~~l~~  156 (174)
T d1pzga2          79 VRFLGQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGLK--DMFIGLPAVIGGAGIERVIELELNEEEKKQFQK  156 (174)
T ss_dssp             HHHHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGCE--EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHH
T ss_pred             eeeecccchhhhhHHHHHHHHHhhcccCCceEEeeeccccccCCC--CceeeeeeEEcCCcEEEEeCCCCCHHHHHHHHH
Confidence            4  467899999999999999999999999999999999999996  699999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 018760          337 SAKTILEVQSQL  348 (350)
Q Consensus       337 sa~~i~~~~~~~  348 (350)
                      |++.|+++++.+
T Consensus       157 s~~~l~~~~~~v  168 (174)
T d1pzga2         157 SVDDVMALNKAV  168 (174)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999887754

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=7.8e-35  Score=250.66  Aligned_cols=167  Identities=34%  Similarity=0.642  Sum_probs=157.6

Q ss_pred             cCCccHHHHHHHHHHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHH
Q 018760          179 GTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEV  258 (350)
Q Consensus       179 g~~ld~~r~~~~la~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v  258 (350)
                      ||.||++|++++||+++|++|++|+++|||+||++++|+||+++++|.|+.++..... +++.+.++++.++++.+++++
T Consensus         1 GT~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~t~vp~~s~~~v~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i   79 (172)
T d1a5za2           1 GTVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQ-KCDSKILENFAEKTKRAAYEI   79 (172)
T ss_dssp             TTHHHHHHHHHHHHHHHTCCGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHTTSS-SCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHCcCHHHeEEEEEecCCCCcccchhhcccCCcchhhhhhccc-cccHHHhhhhHHHHhccceeE
Confidence            7999999999999999999999999999999999999999999999999988765432 577888889999999999999


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHH
Q 018760          259 ISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA  338 (350)
Q Consensus       259 ~~~kg~~~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa  338 (350)
                      +..++++.|++|.++++++.+++.+.+.+++++++.+|+|+.+  ++|||+||++|++||+++.+++|+++|+++|++|+
T Consensus        80 ~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~v~~s~P~~lg~~Gv~~v~~l~Ls~~E~~~l~~sa  157 (172)
T d1a5za2          80 IERKGATHYAIALAVADIVESIFFDEKRVLTLSVYLEDYLGVK--DLCISVPVTLGKHGVERILELNLNEEELEAFRKSA  157 (172)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEESSBTTBC--SEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHH
T ss_pred             eeccccchhhHHHHHHHHHHHHHhhcccceeeecccccccccC--CeeEeeeEEEcCCceEEEeCCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999985  79999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 018760          339 KTILEVQSQL  348 (350)
Q Consensus       339 ~~i~~~~~~~  348 (350)
                      +.||+.++++
T Consensus       158 ~~lk~~i~~l  167 (172)
T d1a5za2         158 SILKNAINEI  167 (172)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999876

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=100.00  E-value=4.5e-35  Score=244.49  Aligned_cols=141  Identities=41%  Similarity=0.616  Sum_probs=133.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh-cCCCceEEEcCCccccCCCCEEEEecCCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA-FLPRTKILASVDYAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~-~~~~~~v~~t~~~~al~~aDiVIi~~g~~  116 (350)
                      |||+|||||+||+++++.|+..++++||+|+|++++++++..+|++|... +....++..++++++++|||+||+++|.|
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~   80 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence            79999999999999999999999999999999999999999999988764 33467787778899999999999999999


Q ss_pred             cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          117 QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       117 ~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                      +++|++|.+++.+|+++++++++.|.++||++|++++|||+|++++++++.+|+|++||||+
T Consensus        81 ~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvd~~~~~~~~~sg~p~~rviG~  142 (142)
T d1guza1          81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVAWVRSGLPKERVIGM  142 (142)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHHHHHHCSCGGGEEEE
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCChHHHHHHHHHHhCCChHhEeeC
Confidence            99999999999999999999999999999999999999999999999999999999999996

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=100.00  E-value=4e-35  Score=245.39  Aligned_cols=140  Identities=30%  Similarity=0.514  Sum_probs=124.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCC-CceEEEcCCccccCCCCEEEEecCCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKILASVDYAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~-~~~v~~t~~~~al~~aDiVIi~~g~~  116 (350)
                      +||+|||||+||+++++.|+..++.+||+|+|++++++++.++|++|...+.. ...+. ++|+++++|||+||+++|.+
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~-~~d~~~l~~adiVVitaG~~   80 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV-INDWAALADADVVISTLGNI   80 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEE-ESCGGGGTTCSEEEECCSCG
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCcccee-ccCHHHhccccEEEEecccc
Confidence            69999999999999999999999999999999999999999999999876543 34554 67899999999999999988


Q ss_pred             c----CccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          117 Q----IAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       117 ~----~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                      +    +||++|++++.+|+++++++++.|.++||++|+|++|||+|++|++++|++|||++||||+
T Consensus        81 ~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~~~k~sg~p~~rViGt  146 (146)
T d1hyha1          81 KLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITALFQHVTGFPAHKVIGT  146 (146)
T ss_dssp             GGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             ccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCcHHHHHHHHHHHhCCCccceeCc
Confidence            7    6788999999999999999999999999999999999999999999999999999999985

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-34  Score=249.09  Aligned_cols=172  Identities=44%  Similarity=0.820  Sum_probs=155.9

Q ss_pred             ecCCccHHHHHHHHHHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHH
Q 018760          178 SGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYE  257 (350)
Q Consensus       178 ~g~~ld~~r~~~~la~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~  257 (350)
                      +||.||++|+++++|+++|++|++|+++||||||++++|+||+++|+|.|+.++..+.......+..+++....+..+.+
T Consensus         1 tGT~LD~~R~~~~vA~~l~v~~~~V~~~ViG~Hs~~~ip~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   80 (172)
T d2ldxa2           1 SGCNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYE   80 (172)
T ss_dssp             CTTHHHHHHHHHHHHHHHTCCTTSSCCCEEECSSSCEEECGGGCBSSCSSSSBSTTTCSCSSSSSSCHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhCcCHHHcEEEEEcCCCCccccceecceecCcchhhHHHHhhhhhhhhhhhhhhhhhccceee
Confidence            48999999999999999999999999999999999999999999999999988775532222333445677778888899


Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHH
Q 018760          258 VISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNS  337 (350)
Q Consensus       258 v~~~kg~~~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~s  337 (350)
                      +...++++.|++|.+++.++.+++.+.+.+++++++++|+||++ .++|||+||++|++||+.+.+++|+++|+++|++|
T Consensus        81 ~~~~k~~s~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~ygi~-~~i~~s~Pv~ig~~Gv~~v~~l~L~~~E~~~l~~s  159 (172)
T d2ldxa2          81 VLDMKGYTSWAIGLSVTDLARSILKNLKRVHPVTTLVKGFHGIK-EEVFLSIPCVLGESGITDFVKVNMTAEEEGLLKKS  159 (172)
T ss_dssp             HHHHHSSCCHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSTTCC-SSCEEEEEEEEETTEEEEEECCCCCHHHHHHHHHH
T ss_pred             hhhcccchhHHHHHHHhHHHHhhcCCCccceeeeeecccccCCc-CCeEEEEEEEEcCCCEEEEecCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999997 59999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 018760          338 AKTILEVQSQLGI  350 (350)
Q Consensus       338 a~~i~~~~~~~~~  350 (350)
                      ++.||+.++.|.+
T Consensus       160 ~~~lk~~~k~l~l  172 (172)
T d2ldxa2         160 ADTLWNMQKNLEL  172 (172)
T ss_dssp             HHHHHHHTSCSCC
T ss_pred             HHHHHHHHHhcCC
Confidence            9999999888764

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=100.00  E-value=4e-34  Score=245.95  Aligned_cols=164  Identities=33%  Similarity=0.633  Sum_probs=154.9

Q ss_pred             CCccHHHHHHHHHHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHH
Q 018760          180 TNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVI  259 (350)
Q Consensus       180 ~~ld~~r~~~~la~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~  259 (350)
                      |.||++|++++||+++|++|++|+++||||||++++|+||+++++|.|+.+++.+.  ++..+++.++.++++.++++++
T Consensus         1 T~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~t~vp~~s~~~i~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~   78 (171)
T d1ez4a2           1 TSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGDSEFAAYSTATIGTRPVRDVAKEQ--GVSDDDLAKLEDGVRNKAYDII   78 (171)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEESSSSSSCEECGGGCEETTEEHHHHHHHT--TCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEccCCCcccccccccccCCccceeecccc--cccchhhhhheeehhhhhHHHH
Confidence            57999999999999999999999999999999999999999999999999887654  5778888899999999999999


Q ss_pred             HhcCCcchHHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHH
Q 018760          260 SLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAK  339 (350)
Q Consensus       260 ~~kg~~~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~  339 (350)
                      +.|+++.|++|.++++++.+++.+.+.+++++++.+|+||+.  ++|||+||++|++||+++.+++|+++|+++|++|++
T Consensus        79 ~~k~s~~~a~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~--~~~~S~Pv~lg~~Gv~~v~~l~Ls~~E~~~l~~s~~  156 (171)
T d1ez4a2          79 NLKGATFYGIGTALMRISKAILRDENAVLPVGAYMDGQYGLN--DIYIGTPAIIGGTGLKQIIESPLSADELKKMQDSAA  156 (171)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGCE--EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHH
T ss_pred             HhhhhHhHHHHHHHHHHHHHHhccCCceEEEEEeeccccCcc--ceeeeEEEEEcCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999984  899999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 018760          340 TILEVQSQ  347 (350)
Q Consensus       340 ~i~~~~~~  347 (350)
                      .|++.+++
T Consensus       157 ~l~~~i~~  164 (171)
T d1ez4a2         157 TLKKVLND  164 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988753

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=100.00  E-value=5.6e-34  Score=243.49  Aligned_cols=159  Identities=30%  Similarity=0.555  Sum_probs=149.0

Q ss_pred             CccHHHHHHHHHHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHH
Q 018760          181 NLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVIS  260 (350)
Q Consensus       181 ~ld~~r~~~~la~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~  260 (350)
                      .||++|+++++|++||++|++|+++|||+||++++|+||+++++|.|+.+++       +++.++++.++++++++++++
T Consensus         3 ~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~~~v~~~s~~~i~g~~~~~~~-------~~~~~~~~~~~v~~~g~~ii~   75 (164)
T d1uxja2           3 VLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFSTISGIPVSEFI-------APDRLAQIVERTRKGGGEIVN   75 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEECCEECSGGGEECCGGGEEETTEEGGGTS-------CHHHHHHHHHHHHTHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCCceeeeeeeeecCCCchhhcc-------chhhHHHHHHHHHHHHHHHHH
Confidence            3899999999999999999999999999999999999999999999987654       455678899999999999965


Q ss_pred             --hcCCcchHHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHH
Q 018760          261 --LKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA  338 (350)
Q Consensus       261 --~kg~~~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa  338 (350)
                        .||++.|++|.++++++++++++.+.++|++++++|+||++  ++|||+||++|++||+++.+++|+++|+++|++|+
T Consensus        76 ~~~kgs~~~a~a~a~~~i~~~i~~~~~~~~~~~~~~~g~ygi~--~~~~s~P~~ig~~Gv~~v~~l~L~~~E~~~l~~s~  153 (164)
T d1uxja2          76 LLKTGSAYYAPAAATAQMVEAVLKDKKRVMPVAAYLTGQYGLN--DIYFGVPVILGAGGVEKILELPLNEEEMALLNASA  153 (164)
T ss_dssp             HHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGCE--EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHH
T ss_pred             HHhcCcccchHHHHHHHHHHHHhCCCCceeeeeeeeccccCCC--CceEEECeEEeCCeeEEEeCCCCCHHHHHHHHHHH
Confidence              57889999999999999999999999999999999999995  79999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 018760          339 KTILEVQSQL  348 (350)
Q Consensus       339 ~~i~~~~~~~  348 (350)
                      +.|++.++.+
T Consensus       154 ~~lk~~i~~l  163 (164)
T d1uxja2         154 KAVRATLDTL  163 (164)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999999876

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.3e-35  Score=246.32  Aligned_cols=143  Identities=57%  Similarity=0.956  Sum_probs=134.4

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecC
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAG  114 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g  114 (350)
                      .+..||+|||||+||+++|+.|+..++++||+|+|++++++++.++||+|+..+.....+..++|++++++||+||+++|
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvitag   96 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITAG   96 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEECCS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEecc
Confidence            34569999999999999999999999999999999999999999999999876555556666778999999999999999


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEee
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIG  177 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG  177 (350)
                      .++++|++|.+++..|+++++++++.|.+++|+++++++|||+|++++++++++|+|++||||
T Consensus        97 ~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNPvDv~t~~~~k~sg~p~~rV~G  159 (159)
T d2ldxa1          97 ARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVDILTYVVWKISGFPVGRVIG  159 (159)
T ss_dssp             CCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSSHHHHHHHHHHHHCSCTTTEEE
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCcHHHHHHHHHHHHCcCcccccC
Confidence            999999999999999999999999999999999999999999999999999999999999998

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

Probab=100.00  E-value=2.2e-34  Score=246.99  Aligned_cols=169  Identities=43%  Similarity=0.815  Sum_probs=151.6

Q ss_pred             ecCCccHHHHHHHHHHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHH
Q 018760          178 SGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYE  257 (350)
Q Consensus       178 ~g~~ld~~r~~~~la~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~  257 (350)
                      +||.||++|++++||++||++|++|+++|||+||++++|+||++++++.|+.++.....   ..+...++..+.+.++.+
T Consensus         1 sGT~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~~~v~~~s~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~   77 (169)
T d1ldma2           1 SGCNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNK---DKQDWKKLHKDVVDSAYE   77 (169)
T ss_dssp             CTTHHHHHHHHHHHHHHHTSCGGGCBCCBCBCSSTTCCBCGGGCEETTEESHHHHSSTT---TTTTTTHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCccchhhhhhcccCCcchHHhhcccc---hhhhcceeEEEecCceEE
Confidence            48999999999999999999999999999999999999999999999999987654321   122233445556777888


Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHH
Q 018760          258 VISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNS  337 (350)
Q Consensus       258 v~~~kg~~~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~s  337 (350)
                      +...++++.|++|.++++++.+++++.+.+++++++++|+||++ +++|||+||++|++||+++.+++|+++|+++|++|
T Consensus        78 ~~~~~~s~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~g~ygi~-~~i~~s~Pv~lg~~Gv~~v~~l~L~~~E~~~l~~s  156 (169)
T d1ldma2          78 VIKLKGYTSWAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIK-DNVFLSLPCVLNDHGISNIVKMKLKPNEEQQLQKS  156 (169)
T ss_dssp             HHHHHSSCCHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSTTCC-SCCEEEEEEEEETTEEEEECCCCCCHHHHHHHHHH
T ss_pred             EeccccchhhHHHHHHhhhhheecCCCCceeeeeeecccccCCc-CCceEEeeEEEcCCcEEEEecCCCCHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999997 58999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 018760          338 AKTILEVQSQLGI  350 (350)
Q Consensus       338 a~~i~~~~~~~~~  350 (350)
                      ++.|++.++.|.+
T Consensus       157 ~~~l~~~~k~lkf  169 (169)
T d1ldma2         157 ATTLWDIQKDLKF  169 (169)
T ss_dssp             HHHHHHHHHTCCC
T ss_pred             HHHHHHHHHhcCC
Confidence            9999999998764

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=100.00  E-value=6.3e-34  Score=242.90  Aligned_cols=159  Identities=33%  Similarity=0.561  Sum_probs=148.8

Q ss_pred             CccHHHHHHHHHHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHH
Q 018760          181 NLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVIS  260 (350)
Q Consensus       181 ~ld~~r~~~~la~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~  260 (350)
                      +||++|+++++|++++++|++|+++||||||++++|+||+++++|.|+.+++       +++.++++.+++++++.++++
T Consensus         3 ~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~s~vp~~s~~~i~g~~~~~~~-------~~~~~~~~~~~v~~~g~~ii~   75 (163)
T d1guza2           3 VLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVVKYTTVAGIPISDLL-------PAETIDKLVERTRNGGAEIVE   75 (163)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEECCEEECSGGGEEECGGGCEETTEEHHHHS-------CHHHHHHHHHHHHTHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCCCcccCHhhcccCCccccccC-------CHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999999999999999999987754       455677899999999999986


Q ss_pred             --hcCCcchHHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHH
Q 018760          261 --LKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA  338 (350)
Q Consensus       261 --~kg~~~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa  338 (350)
                        +||++.|++|.++++++.+++.+.+.++|++++++|+||++  ++|||+||++|++|++++.+++|+++|+++|++|+
T Consensus        76 ~~~kgsa~~a~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~--~~~~s~P~~lg~~Gv~~i~~l~Ls~~E~~~l~~sa  153 (163)
T d1guza2          76 HLKQGSAFYAPASSVVEMVESIVLDRKRVLPCAVGLEGQYGID--KTFVGVPVKLGRNGVEQIYEINLDQADLDLLQKSA  153 (163)
T ss_dssp             HHSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGCE--EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHH
T ss_pred             HhcCCCcchhHHHHHHHHHHheeccCCCEEEEeeeeccccCCC--CcEEEEeeEEcCCeeEEEecCCCCHHHHHHHHHHH
Confidence              46889999999999999999999999999999999999995  89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 018760          339 KTILEVQSQL  348 (350)
Q Consensus       339 ~~i~~~~~~~  348 (350)
                      +.|++.++.|
T Consensus       154 ~~l~~~i~~l  163 (163)
T d1guza2         154 KIVDENCKML  163 (163)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHhhC
Confidence            9999999865

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=4.5e-34  Score=239.91  Aligned_cols=142  Identities=32%  Similarity=0.541  Sum_probs=131.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEEEEecCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLCIVTAGA  115 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiVIi~~g~  115 (350)
                      +.||+|||+|.||+++++.|+++++ .||+|+|++++++++.++|++|...+. ...++..+.++++++|||+||+++|.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~   81 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGF   81 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEeccc
Confidence            4699999999999999999998886 699999999999999999999986542 45667777788999999999999999


Q ss_pred             CcCcccc-----HHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeec
Q 018760          116 RQIAGES-----RLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSG  179 (350)
Q Consensus       116 ~~~~g~~-----r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g  179 (350)
                      +++||++     |++++..|+++++++++.|+++||+++++++|||+|+|++++++.+|||++||||+|
T Consensus        82 ~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPvD~~t~~~~~~sg~p~~rViG~G  150 (150)
T d1t2da1          82 TKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLLHQHSGVPKNKIIGLG  150 (150)
T ss_dssp             SSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHHHHHHCCCGGGEEECC
T ss_pred             ccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHHHCCCchheeccC
Confidence            9999876     999999999999999999999999999999999999999999999999999999986

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=9.5e-34  Score=235.53  Aligned_cols=139  Identities=33%  Similarity=0.524  Sum_probs=129.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCC--ccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecC
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAK--ADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAG  114 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~--~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g  114 (350)
                      .||+|||| |.+|+++|+.|+.+++++||+|+|++  ++++++.++|++|...+....++. +.++++++|||+||+++|
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~-~~~~~~~~~aDiVvitaG   79 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVR-QGGYEDTAGSDVVVITAG   79 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEE-ECCGGGGTTCSEEEECCC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEe-eCCHHHhhhcCEEEEecc
Confidence            39999994 99999999999999999999999975  466889999999987665566665 567899999999999999


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEee
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIG  177 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG  177 (350)
                      .|++||++|.+++..|+++++++++.|.++||+++++++|||+|+|+++++|.+|||++||||
T Consensus        80 ~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNPvDvmt~~~~k~sg~~~~rViG  142 (142)
T d1o6za1          80 IPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHLYEAGDRSREQVIG  142 (142)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHHHHHHSSSCGGGEEE
T ss_pred             cccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecChHHHHHHHHHHHHCcCcccccC
Confidence            999999999999999999999999999999999999999999999999999999999999997

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=8.8e-34  Score=239.50  Aligned_cols=147  Identities=30%  Similarity=0.541  Sum_probs=134.4

Q ss_pred             CCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCc-cccCCCCE
Q 018760           31 PSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDY-AVTAGSDL  108 (350)
Q Consensus        31 ~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~-~al~~aDi  108 (350)
                      ++++++++||+|||||+||+++|+.|+..++ .||+|+|++++++++.++|++|...+. ....+..++++ +++++||+
T Consensus         1 ~~~~~k~~KI~IIGaG~VG~~lA~~l~~~~~-~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adi   79 (154)
T d1pzga1           1 PALVQRRKKVAMIGSGMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADC   79 (154)
T ss_dssp             CCCCSCCCEEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSE
T ss_pred             CccccCCCcEEEECCCHHHHHHHHHHHhCCC-ceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCe
Confidence            4678888999999999999999999999887 599999999999999999999987543 34556666676 67999999


Q ss_pred             EEEecCCCcCccc-----cHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          109 CIVTAGARQIAGE-----SRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       109 VIi~~g~~~~~g~-----~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                      ||+++|.+++||+     +|.+++.+|+++++++++.|.++||+++++++|||+|++|+++++.+|||++||||+
T Consensus        80 Vvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPvd~lt~~~~~~sg~p~~rViG~  154 (154)
T d1pzga1          80 VIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVMCEASGVPTNMICGM  154 (154)
T ss_dssp             EEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             EEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHHHHHhCcChhcEecC
Confidence            9999999999985     899999999999999999999999999999999999999999999999999999996

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=5e-34  Score=244.66  Aligned_cols=166  Identities=31%  Similarity=0.536  Sum_probs=144.6

Q ss_pred             ecCCccHHHHHHHHHHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHH
Q 018760          178 SGTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYE  257 (350)
Q Consensus       178 ~g~~ld~~r~~~~la~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~  257 (350)
                      +||.||++|+++++|++||++|++|+++||||||++++|+||+++++|+|+.++.....  +   ..+++.+++++++++
T Consensus         1 ~GT~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~~~vp~~s~~~i~g~~~~~~~~~~~--~---~~~~~~~~~~~~~~~   75 (168)
T d1hyea2           1 LGTHLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGDSMVPLLSATSIGGIPIQKFERFKE--L---PIDEIIEDVKTKGEQ   75 (168)
T ss_dssp             CTTHHHHHHHHHHHHHHHTCCGGGEECCEEECSSTTEEECGGGCEETTEEGGGCGGGGG--C---CHHHHHHHHHHHTTS
T ss_pred             CCchHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCCccccchhheeECCEecccccccch--h---hhhhHHHHHhhhHHH
Confidence            58999999999999999999999999999999999999999999999999988765432  2   234566677778888


Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHH
Q 018760          258 VISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNS  337 (350)
Q Consensus       258 v~~~kg~~~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~s  337 (350)
                      ++..|++++|++|.+++.++.+++++.+.++++++++.++|+.+ +++|||+||++|++||+++.+++|+++|+++|++|
T Consensus        76 ~~~~k~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~s~Pv~lg~~Gv~~i~~l~Ls~~E~~~l~~S  154 (168)
T d1hyea2          76 IIRLKGGSEFGPAAAILNVVRCIVNNEKRLLTLSAYVDGEFDGI-RDVCIGVPVKIGRDGIEEVVSIELDKDEIIAFRKS  154 (168)
T ss_dssp             CCC------CCHHHHHHHHHHHHHTTCCEEEEEEEEEESSSSSC-EEEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHH
T ss_pred             HHHhccCccccchhhhhHHHHhhhccCCCeEEEEEEEecccCCc-CCEEEeeceEEcCCcEEEEecCCCCHHHHHHHHHH
Confidence            88889999999999999999999999999999999988887655 48999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhC
Q 018760          338 AKTILEVQSQLG  349 (350)
Q Consensus       338 a~~i~~~~~~~~  349 (350)
                      ++.|++.++++.
T Consensus       155 a~~lk~~~~~~k  166 (168)
T d1hyea2         155 AEIIKKYCEEVK  166 (168)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998763

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=100.00  E-value=3.6e-33  Score=242.90  Aligned_cols=162  Identities=22%  Similarity=0.286  Sum_probs=143.0

Q ss_pred             CCccHHHHHHHHHHHcCCCCcceEE-EEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHH
Q 018760          180 TNLDSSRFRFLLADHLDVNAQDVQA-YIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEV  258 (350)
Q Consensus       180 ~~ld~~r~~~~la~~l~v~p~~v~~-~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v  258 (350)
                      |.||++|++++||+++|++|++|+. +||||||++++|+||+++|+|.|+.+++++.     ....+++.+.++++++++
T Consensus         1 T~LDs~R~r~~lA~~l~V~~~~V~~~iI~GeHGds~vp~~S~a~v~g~~l~~~~~~~-----~~~~~~~~~~v~~~~~~i   75 (188)
T d7mdha2           1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRT-----KWLEEEFTITVQKRGGAL   75 (188)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTCCCH-----HHHHHHHHHHHHTHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCHHHeeEEEEEEcCCCcEeeeeeccEeeccchhhcccch-----hhhHHHHHHHHhhhHHHH
Confidence            5799999999999999999999985 5889999999999999999999999887543     223467888899999999


Q ss_pred             HHhcCCcch-HHHHHHHHHHHHHHhcCC--CeEEEEEEeccc-cCCCCCCeEEEEeEEEcCCceEEe-ecCCCCHHHHHH
Q 018760          259 ISLKGYTSW-AIGYSAANLARSIIRDQR--KIHPVSVLAKGF-YGIDGGDVFLSLPAQLGRGGVLGV-TNIHLNQEESHR  333 (350)
Q Consensus       259 ~~~kg~~~~-~~a~a~~~ii~ai~~~~~--~v~~v~v~~~g~-~gi~~~~~~~s~Pv~ig~~Gv~~v-~~~~L~~~E~~~  333 (350)
                      ++.||.++| ++|.|+++++++|+++.+  .++|++++++|. ||++ +|+|||+||++|++|+.++ .+++|+++|+++
T Consensus        76 i~~kg~s~~~s~A~A~~~~~~ai~~~~~~~~~~s~~v~~~g~~YGi~-~~v~~s~Pv~ig~~G~~~iv~~l~L~~~e~~~  154 (188)
T d7mdha2          76 IQKWGRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIA-EDIVFSMPCRSKGDGDYELATDVSNDDFLWER  154 (188)
T ss_dssp             HHHTSSCCHHHHHHHHHHHHHHHHSCCCTTCCEEEEEECTTCSSCCC-SSSEEEEEEECCSSSCCEECCCCCCCHHHHHH
T ss_pred             HHhhcccchhhHHHHHHHHHHHHHcCCCCCceEEEEEEeCCCccCCC-CCeEEEEeeEECCCccEEEeCCCCCCHHHHHH
Confidence            999998876 599999999999999764  578899999985 9997 5999999999999996655 579999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 018760          334 LRNSAKTILEVQSQ  347 (350)
Q Consensus       334 l~~sa~~i~~~~~~  347 (350)
                      |++|+++|+++.+.
T Consensus       155 l~~S~~eL~~e~~~  168 (188)
T d7mdha2         155 IKKSEAELLAEKKC  168 (188)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887654

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=3.9e-33  Score=241.55  Aligned_cols=166  Identities=17%  Similarity=0.195  Sum_probs=145.9

Q ss_pred             CCccHHHHHHHHHHHcCCCCcceEEE-EEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHH
Q 018760          180 TNLDSSRFRFLLADHLDVNAQDVQAY-IVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEV  258 (350)
Q Consensus       180 ~~ld~~r~~~~la~~l~v~p~~v~~~-v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v  258 (350)
                      |.||++|+++++|++||++|++|+++ |||+||+++||+||+++|+|+|+.+++.+.. .++....+++.++++.+++++
T Consensus         1 T~LDs~R~r~~la~~l~V~~~~V~~~vI~GeHG~s~vp~~S~a~v~g~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~i   79 (179)
T d5mdha2           1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAV-KDDSWLKGEFITTVQQRGAAV   79 (179)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECTTCEEECSSCEEEHHHHH-CCHHHHHTHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCHHHcEEEEEEEcCCCcccccchhceecCcchhhhhhhcc-ccchhhHHHHHHHHHhccHhh
Confidence            57999999999999999999999885 5599999999999999999999988776542 344556677888889999999


Q ss_pred             HHhcCC-cchHHHHHHHHHHHHHHhcCC--CeEEEEEEecc-ccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHH
Q 018760          259 ISLKGY-TSWAIGYSAANLARSIIRDQR--KIHPVSVLAKG-FYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRL  334 (350)
Q Consensus       259 ~~~kg~-~~~~~a~a~~~ii~ai~~~~~--~v~~v~v~~~g-~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l  334 (350)
                      ++.|+. +.|++|.++++++++|+++.+  .+++++++++| +||++ +++|||+||+++++||+++.+++|+++|+++|
T Consensus        80 ~~~~~~ss~~~~a~a~~~~~~~i~~~~~~~~~~s~~v~~~g~~yGi~-~~v~~s~P~~lg~~Gv~~v~~l~L~~~E~~~l  158 (179)
T d5mdha2          80 IKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVP-DDLLYSFPVTIKDKTWKIVEGLPINDFSREKM  158 (179)
T ss_dssp             HHHHSSCCCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCSSSCC-SSCEEEEEEEEETTEEEECCCCCCCHHHHHHH
T ss_pred             hhccCcchHHHHHHHHHHHHHHHHhhcccCCceeEEEEccCcccCCc-cceEEeeeEEEcCCcEEEEeCCCCCHHHHHHH
Confidence            987765 458999999999999998654  56777788887 69998 69999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 018760          335 RNSAKTILEVQSQ  347 (350)
Q Consensus       335 ~~sa~~i~~~~~~  347 (350)
                      ++|++.|+++++.
T Consensus       159 ~~Sa~~L~~~~~~  171 (179)
T d5mdha2         159 DLTAKELAEEKET  171 (179)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988864

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=7.3e-33  Score=237.15  Aligned_cols=165  Identities=38%  Similarity=0.678  Sum_probs=152.5

Q ss_pred             CCccHHHHHHHHHHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHH
Q 018760          180 TNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVI  259 (350)
Q Consensus       180 ~~ld~~r~~~~la~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~  259 (350)
                      |.||++|++.++|++||++|++|+++||||||++++|+||+++++|.|+.+++.... +...+..+++.+.++..+.++.
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~~~vp~~s~~~v~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~v~   79 (168)
T d1ldna2           1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKG-EEAQKDLERIFVNVRDAAYQII   79 (168)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGEEEEEEBCSSTTCEEEEEEEEETTEESTTTSGGGT-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHeEEEEEcCCCCccccchhhcccCCcchhhhhhhhh-hhhccchhhhhhhhhhhHHHHH
Confidence            579999999999999999999999999999999999999999999999998876543 3445566778888888899999


Q ss_pred             HhcCCcchHHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHH
Q 018760          260 SLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAK  339 (350)
Q Consensus       260 ~~kg~~~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~  339 (350)
                      ..|+++.|+++.++.+++.+++.+.+.+++++++.+++||.+  ++|||+||++|++||+.+.+++|+++|+++|++|++
T Consensus        80 ~~~~~s~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~--~v~~s~Pv~lg~~Gv~~v~~l~Ls~~E~~~L~~s~~  157 (168)
T d1ldna2          80 EKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGER--DVYIGVPAVINRNGIREVIEIELNDDEKNRFHHSAA  157 (168)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESTTSCE--EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHH
T ss_pred             HhhccccchHHHHHhhHHHhhhcccceeeeeeeeeccccCCC--CeeecceEEEcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999964  899999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 018760          340 TILEVQSQ  347 (350)
Q Consensus       340 ~i~~~~~~  347 (350)
                      .|++.+++
T Consensus       158 ~lk~~i~~  165 (168)
T d1ldna2         158 TLKSVLAR  165 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999986

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=4.2e-33  Score=238.21  Aligned_cols=161  Identities=32%  Similarity=0.540  Sum_probs=150.8

Q ss_pred             ccHHHHHHHHHHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHHHh
Q 018760          182 LDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVISL  261 (350)
Q Consensus       182 ld~~r~~~~la~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~~~  261 (350)
                      ||++|+++++|+++|++|++|+++|||+||++++|+||+++++|.|+.++....  .+.+++.+++.+.++++++++++.
T Consensus         3 LD~~R~~~~la~~lgv~~~~V~~~ViG~Hg~~~vp~~s~~~i~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~   80 (165)
T d1t2da2           3 LDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNK--LISDAELEAIFDRTVNTALEIVNL   80 (165)
T ss_dssp             HHHHHHHHHHHHHHTSCGGGEECCEEBCSSTTCEECGGGCEETTEEHHHHHHTT--SSCHHHHHHHHHHHHTHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCcCHHHeEEEEEcCCCCCcccceeecccCCcchhhhcccc--hhhhhhhhhhhhhhhhhhHHHhhh
Confidence            899999999999999999999999999999999999999999999998766543  355677788888999999999999


Q ss_pred             cCCcchHHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHHHH
Q 018760          262 KGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAKTI  341 (350)
Q Consensus       262 kg~~~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~~i  341 (350)
                      |++++|++|.+++.++.+++.+.+.++|++++++|+||++  ++|||+||++|++||+.+.+++|+++|+++|++|+++|
T Consensus        81 ~~~~~~a~a~a~~~~~~~i~~~~~~~~~~~v~~~g~yg~~--~v~~s~Pv~lg~~Gv~~i~~l~L~~~E~~~L~~s~~~l  158 (165)
T d1t2da2          81 HASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHS--DIFGGTPVVLGANGVEQVIELQLNSEEKAKFDEAIAET  158 (165)
T ss_dssp             TSSCCHHHHHHHHHHHHHHHTTCCEEEEEEEEEESGGGCE--EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHHHHH
T ss_pred             ccceeechhHHHHHHHHHHhhccccceeeeeccccccccC--CeeEeeeEEEcCCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999985  79999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 018760          342 LEVQS  346 (350)
Q Consensus       342 ~~~~~  346 (350)
                      ++...
T Consensus       159 k~~~~  163 (165)
T d1t2da2         159 KRMKA  163 (165)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98754

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=100.00  E-value=4.7e-33  Score=237.44  Aligned_cols=159  Identities=31%  Similarity=0.537  Sum_probs=143.2

Q ss_pred             cCCccHHHHHHHHHHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHH
Q 018760          179 GTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEV  258 (350)
Q Consensus       179 g~~ld~~r~~~~la~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v  258 (350)
                      ||.||++|+++++|+++|++|++|+++||||||++++|+||+++++|+|+.+++....     +..+++.++++++++++
T Consensus         1 GT~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~~~vp~~s~~~v~g~~~~~~~~~~~-----~~~~~i~~~v~~~~~~i   75 (163)
T d1hyha2           1 GTLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGNSQFVAWSTVRVMGQPIVTLADAGD-----IDLAAIEEEARKGGFTV   75 (163)
T ss_dssp             TTHHHHHHHHHHHHHHHTCCGGGCBCCEEBCTTTTCEECTTTCEETTEEGGGC----------CCHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCCcCccceeccccCCchHHHHhcccc-----chHHHHHHHHhhhHHHH
Confidence            7999999999999999999999999999999999999999999999999998875432     23567888899999999


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHH
Q 018760          259 ISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA  338 (350)
Q Consensus       259 ~~~kg~~~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa  338 (350)
                      ++.||++.|++|.++..++.++..+...+.+++.+..+      +++|||+||++|++||+.+.+++|+++|+++|++|+
T Consensus        76 ~~~kg~~~~~~a~~~~~~~~~~~~~~~~~~~~s~~~~~------~~~~~s~Pv~ig~~Gv~~v~~l~Ls~~E~~~l~~s~  149 (163)
T d1hyha2          76 LNGKGYTSYGVATSAIRIAKAVMADAHAELVVSNRRDD------MGMYLSYPAIIGRDGVLAETTLDLTTDEQEKLLQSR  149 (163)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHHHTTCCEEEEEEEECTT------TCSEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHH
T ss_pred             HHHHHhHHHhHHHHhhHHHHHhcCCccceeeeceecCC------cceEEEeEEEEcCCeEEEEecCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999888876332      378999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 018760          339 KTILEVQSQL  348 (350)
Q Consensus       339 ~~i~~~~~~~  348 (350)
                      +.|++.++++
T Consensus       150 ~~l~~~~~~~  159 (163)
T d1hyha2         150 DYIQQRFDEI  159 (163)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999864

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=100.00  E-value=2.4e-33  Score=233.71  Aligned_cols=139  Identities=35%  Similarity=0.575  Sum_probs=122.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEEEEecCCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiVIi~~g~~  116 (350)
                      +||+|||||+||+++|+.|+.+++. |++|+|++++++++.++|++|...+. ...++..++|++++++||+||+++|.|
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~-dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~advvvitag~~   80 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELG-DIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGAP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCS-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcc-eEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCEEEEeeecc
Confidence            5999999999999999999999874 89999999999999999999987543 355788788999999999999999999


Q ss_pred             cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEee
Q 018760          117 QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIG  177 (350)
Q Consensus       117 ~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG  177 (350)
                      ++||++|.+++..|+++++++++.|.++||+++++++|||+|++++++++.+|+|++||||
T Consensus        81 ~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNPvDv~t~~~~~~sglp~~rViG  141 (142)
T d1uxja1          81 RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSGFPKERVIG  141 (142)
T ss_dssp             ---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSSHHHHHHHHHHHHCCCGGGEEE
T ss_pred             CCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCchHHHHHHHHHHHCcCcccccC
Confidence            9999999999999999999999999999999999999999999999999999999999998

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=9.1e-33  Score=230.59  Aligned_cols=139  Identities=29%  Similarity=0.458  Sum_probs=125.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc--cchHHHHHHHHHHhhcC-CCceE--EEcCCccccCCCCEEEE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA--DKLRGEMLDLQHAAAFL-PRTKI--LASVDYAVTAGSDLCIV  111 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~--~~l~~~~~dl~~~~~~~-~~~~v--~~t~~~~al~~aDiVIi  111 (350)
                      |||+|||| |+||+++|+.|+.+++++||+|+|+++  +++++.++|++|..... ...++  ..+.++++++|||+||+
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi   80 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence            79999997 999999999999999999999999987  46788899999986532 23344  44557899999999999


Q ss_pred             ecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEee
Q 018760          112 TAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIG  177 (350)
Q Consensus       112 ~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG  177 (350)
                      ++|.|++||++|.|++.+|+++++++++.|.++||++++ ++|||+|+|++++++.+|+|++||||
T Consensus        81 tAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~ii-vVtNPvD~mt~~~~k~sg~p~~rViG  145 (145)
T d1hyea1          81 TSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-VITNPVDVMTYKALVDSKFERNQVFG  145 (145)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE-ECSSSHHHHHHHHHHHHCCCTTSEEE
T ss_pred             ecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEE-EEcCchHHHHHHHHHHHCcCcccccC
Confidence            999999999999999999999999999999999999865 68999999999999999999999997

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.98  E-value=1.8e-34  Score=248.41  Aligned_cols=165  Identities=35%  Similarity=0.685  Sum_probs=150.7

Q ss_pred             CCccHHHHHHHHHHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHH
Q 018760          180 TNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVI  259 (350)
Q Consensus       180 ~~ld~~r~~~~la~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~  259 (350)
                      |.||++|+++++|+++|++|++|+++||||||++++|+||+++++|.|+.+++.... +++.+.++++.++++.++++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~~~vp~~s~~~i~g~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~i~   79 (172)
T d1llca2           1 TSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHP-EIKEDKLVKMFEDVRDAAYEII   79 (172)
T ss_dssp             THHHHHHHHHHHHHHSCCCTTSCEEEEEBSSSSSCEEEEEEEESTTCCSSSSSSCSC-SSSSSSSSTTTTTTGGGTTTTS
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCCcceeeeeccccCCccHHHHHhhhh-ccchhHHHHHHHhhcchHHHHH
Confidence            579999999999999999999999999999999999999999999999988775432 3444455667777888899999


Q ss_pred             HhcCCcchHHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHH
Q 018760          260 SLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAK  339 (350)
Q Consensus       260 ~~kg~~~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~  339 (350)
                      +.||+++|++|.++++++.+++.+.+.++|++++++|+||++  ++|||+||++|++|++++.+++|+++|+++|++|++
T Consensus        80 ~~kg~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~g~ygi~--~~~~s~P~~lg~~Gv~~i~~l~L~~~E~~~l~~s~~  157 (172)
T d1llca2          80 KLKGATFYGIATALARISKAILNDENAVLPLSVYMDGQYGIN--DLYIGTPAVINRNGIQNILEIPLTDHEEESMQKSAS  157 (172)
T ss_dssp             SSSSCTTHHHHHHHHHHHHHHHHTCCCCEECCCCCSSSSSCC--SSCCBCEEEEETTEEEEECCCCCTTHHHHHHHTTTT
T ss_pred             HhhhhhhhhhHHHHHHHHHHHhcCCCCccceeeeecCccCcc--cceEEEEEEEcCCceEEEecCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999996  699999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 018760          340 TILEVQSQ  347 (350)
Q Consensus       340 ~i~~~~~~  347 (350)
                      +||+.+++
T Consensus       158 ~lk~~i~~  165 (172)
T d1llca2         158 QLKKVLTD  165 (172)
T ss_dssp             TTTTTTTT
T ss_pred             HHHHHHHH
Confidence            99987754

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.98  E-value=1.2e-31  Score=230.76  Aligned_cols=165  Identities=21%  Similarity=0.280  Sum_probs=139.4

Q ss_pred             CCccHHHHHHHHHHHcCCCCcceEEE-EEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHH
Q 018760          180 TNLDSSRFRFLLADHLDVNAQDVQAY-IVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEV  258 (350)
Q Consensus       180 ~~ld~~r~~~~la~~l~v~p~~v~~~-v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v  258 (350)
                      |.||++|+++++|++++++|++|+++ |||+||++++|+||+++++|.|+.++..+..  ...   +.+...++..+..+
T Consensus         2 T~LDs~R~r~~lA~~l~v~~~~V~~~iI~GeHG~s~vp~~S~~~v~g~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~   76 (173)
T d1y7ta2           2 TRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEW--YEK---VFIPTVAQRGAAII   76 (173)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSSTTCEEECSSCEETTEEGGGTSCHHH--HHH---THHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHCcCHHHcEEEEEEEecCccEEeeeeeeeEcCccHHHhccccc--ccc---hhhhhhhhhHHHHH
Confidence            78999999999999999999999986 6799999999999999999999988775432  112   22333334444445


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHh--cCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHH
Q 018760          259 ISLKGYTSWAIGYSAANLARSIIR--DQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRN  336 (350)
Q Consensus       259 ~~~kg~~~~~~a~a~~~ii~ai~~--~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~  336 (350)
                      ...++++.|++|.++++++.+++.  +.+.++|++++++|+||++ ++.++|+||+++++||+.+.+++|+++|+++|++
T Consensus        77 ~~~~~~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~v~~~g~YGi~-~~~~~s~Pvi~~~gg~~~v~~l~L~~~E~~~l~~  155 (173)
T d1y7ta2          77 QARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIP-EGIVYSFPVTAKDGAYRVVEGLEINEFARKRMEI  155 (173)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHTBCCTTCCEEEEEECSSGGGCC-TTSEEEEEEEEETTEEEECCCCCCCHHHHHHHHH
T ss_pred             HHhccCchhhHHHHHHHHHHHHhcccCCCCceeeEEEeccccCCc-cceeEeeeEEEeCCeEEEecCCCCCHHHHHHHHH
Confidence            556778889999999999999998  5678999999999999998 5999999999999999999999999999999999


Q ss_pred             HHHHHHHHH---HHhCC
Q 018760          337 SAKTILEVQ---SQLGI  350 (350)
Q Consensus       337 sa~~i~~~~---~~~~~  350 (350)
                      |+++|++.+   +.|++
T Consensus       156 s~~~L~~~~e~vk~lg~  172 (173)
T d1y7ta2         156 TAQELLDEMEQVKALGL  172 (173)
T ss_dssp             HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhCC
Confidence            999997766   45553

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.97  E-value=1.3e-31  Score=227.57  Aligned_cols=159  Identities=30%  Similarity=0.566  Sum_probs=148.0

Q ss_pred             cCCccHHHHHHHHHHHcCCCCcceEEEEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHH
Q 018760          179 GTNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEV  258 (350)
Q Consensus       179 g~~ld~~r~~~~la~~l~v~p~~v~~~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v  258 (350)
                      ||+||++|++++||+++|++|++|+++|||+||++++|+||++++++.|..         +..+..+++.++++.++.++
T Consensus         2 Gt~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~~~v~~~s~~~v~~~~~~---------~~~~~~~~~~~~~~~~~~~i   72 (161)
T d1o6za2           2 GGRLDSARFRYVLSEEFDAPVQNVEGTILGEHGDAQVPVFSKVSVDGTDPE---------FSGDEKEQLLGDLQESAMDV   72 (161)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCGGGEECCEEECSSTTEEECGGGCEETTBCCC---------CCHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHCcCHHHeEEEEEeCCCCceeeehhhhcccccccc---------cchHHHHHHHHHhhhhHHHH
Confidence            689999999999999999999999999999999999999999999988753         23455677788889999999


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHH
Q 018760          259 ISLKGYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA  338 (350)
Q Consensus       259 ~~~kg~~~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa  338 (350)
                      .+.++.+.+++|.++++++.+++.+.+.++++++..+++|+.+  ++|||+||++|++|++++.+++|+++|+++|++|+
T Consensus        73 ~~~~~~s~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~S~Pv~ig~~Gv~~v~~l~l~~~E~~~L~~s~  150 (161)
T d1o6za2          73 IERKGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHE--DTAFGVPVSLGSNGVEEIVEWDLDDYEQDLMADAA  150 (161)
T ss_dssp             HTTTSSCCHHHHHHHHHHHHHHHTTCCCEEEEEEEEESGGGCE--EEEEEEEEEEETTEEEEECCCCCCHHHHHHHHHHH
T ss_pred             HHhhhhhhhHHHHhhHhhhHhhhhccccceeeccccccccccc--CceeeeeeEEcCCCEEEEeCCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988874  89999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 018760          339 KTILEVQSQL  348 (350)
Q Consensus       339 ~~i~~~~~~~  348 (350)
                      +.|++.++++
T Consensus       151 ~~L~~~~~~i  160 (161)
T d1o6za2         151 EKLSDQYDKI  160 (161)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999999986

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=6.5e-32  Score=225.37  Aligned_cols=139  Identities=26%  Similarity=0.415  Sum_probs=121.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhc-CCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCC
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQ-DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGA  115 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~-~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~  115 (350)
                      |||+|||+ |+||+++|+.|+.+ ++.+||+|+|+++ ++++.++|++|+..+.....+..++++++++|||+||+++|.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~   79 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCc
Confidence            79999995 99999999998765 7789999999975 678999999998643322233334567899999999999999


Q ss_pred             CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHH----hCCCCCcEee
Q 018760          116 RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKL----SGLPSNRVIG  177 (350)
Q Consensus       116 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~----sg~~~~rviG  177 (350)
                      |++||++|.+++..|.+++++++++|.+++|+++++++|||+|++++++++.    +++|++|+||
T Consensus        80 ~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNPvD~m~~~~~~v~~~~~~l~~~RviG  145 (145)
T d2cmda1          80 RRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFG  145 (145)
T ss_dssp             CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred             cCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCchHHHHHHHHHHHHcCCCChhhccC
Confidence            9999999999999999999999999999999999999999999999988754    5699999997

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.97  E-value=2e-31  Score=222.29  Aligned_cols=137  Identities=23%  Similarity=0.395  Sum_probs=120.5

Q ss_pred             eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC-ccccCCCCEEEEecCCC
Q 018760           39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD-YAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~-~~al~~aDiVIi~~g~~  116 (350)
                      ||+|||| |.||+++|+.|+.+++++||+|+|+++  .++.++|++|...+........+++ +++++|||+||+++|.|
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~--~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~   79 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP   79 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc--cchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcC
Confidence            9999997 999999999999999999999999976  4677889998875443222333334 57899999999999999


Q ss_pred             cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHH----HHhCCCCCcEee
Q 018760          117 QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAW----KLSGLPSNRVIG  177 (350)
Q Consensus       117 ~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~----~~sg~~~~rviG  177 (350)
                      +++|++|.+++..|+++++++++.|.++||+++++++|||+|+++++++    +.++||++||||
T Consensus        80 ~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG  144 (144)
T d1mlda1          80 RKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG  144 (144)
T ss_dssp             CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence            9999999999999999999999999999999999999999999888764    556899999998

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

Probab=99.96  E-value=1.4e-29  Score=217.39  Aligned_cols=162  Identities=16%  Similarity=0.265  Sum_probs=133.8

Q ss_pred             CccHHHHHHHHHHHcCCCCcceEE-EEEeecCCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHHH
Q 018760          181 NLDSSRFRFLLADHLDVNAQDVQA-YIVGEHGDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEVI  259 (350)
Q Consensus       181 ~ld~~r~~~~la~~l~v~p~~v~~-~v~G~hg~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v~  259 (350)
                      .||++|++++||+++|++|++|++ +|||+||++++|+||+++++|.|+.++..+..     ...+++.+.+..++..+.
T Consensus         2 ~LD~~R~r~~lA~kl~v~~~~V~~~iI~GehG~s~vp~~S~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~   76 (171)
T d1b8pa2           2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDA-----WNRDTFLPTVGKRGAAII   76 (171)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEESCEEEBCSSTTCEEECSSCEETTEEHHHHHCCHH-----HHHHTHHHHHHTHHHHHH
T ss_pred             cchHHHHHHHHHHHHCcCHHHeEEEEEEEcCCCcEEeeeecceeecccchhhhhhhc-----chhhhHHHHHHHHHHHHH
Confidence            479999999999999999999987 68899999999999999999999988765432     122333444555666666


Q ss_pred             HhcCCcch--HHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHH
Q 018760          260 SLKGYTSW--AIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNS  337 (350)
Q Consensus       260 ~~kg~~~~--~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~s  337 (350)
                      ..++.+++  +.+.++..+..++..+.+.++|++++++|+||++ +++|||+||+++++||+.+.+++|+++|+++|++|
T Consensus        77 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~s~~~~g~yg~~-~gi~fS~Pv~ig~~gve~v~~l~L~~~e~~~l~~s  155 (171)
T d1b8pa2          77 DARGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIP-EGVIFGFPVTTENGEYKIVQGLSIDAFSQERINVT  155 (171)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHCCTTCCEEEEEECCSGGGCC-TTCEEEEEEEEETTEEEECCCCCCCHHHHHHHHHH
T ss_pred             HHHhhhhhhhhhHHHHHHHHHHHhCCCccceeEEEEeccccccc-cceEEEEEEEEeCCeEEEEeCCCCCHHHHHHHHHH
Confidence            66655544  3445566666777777889999999999999997 59999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 018760          338 AKTILEVQSQL  348 (350)
Q Consensus       338 a~~i~~~~~~~  348 (350)
                      +++|+++++.+
T Consensus       156 ~~~L~~e~~~v  166 (171)
T d1b8pa2         156 LNELLEEQNGV  166 (171)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999888754

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=4.6e-29  Score=210.56  Aligned_cols=143  Identities=23%  Similarity=0.354  Sum_probs=119.8

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCe-----EEEEeC--CccchHHHHHHHHHHhhcCCCceEEEcC-CccccC
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEE-----LALVDA--KADKLRGEMLDLQHAAAFLPRTKILASV-DYAVTA  104 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~e-----v~L~D~--~~~~l~~~~~dl~~~~~~~~~~~v~~t~-~~~al~  104 (350)
                      ++++|||+|||| |.||+++++.|++++++++     +.|+|.  +.+++++..+++.+.... ....+..++ ++++++
T Consensus         1 m~~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   79 (154)
T d1y7ta1           1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFP-LLAGLEATDDPKVAFK   79 (154)
T ss_dssp             CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCT-TEEEEEEESCHHHHTT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccc-cccccccCCchhhhcc
Confidence            467899999998 9999999999999987653     344444  456777777888876532 223344443 468999


Q ss_pred             CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCC-CeEEEEEcCCcchHHHHHHHH-hCCCCCcEee
Q 018760          105 GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSP-DCILLIVANPVDILTYVAWKL-SGLPSNRVIG  177 (350)
Q Consensus       105 ~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNP~~~~~~~~~~~-sg~~~~rviG  177 (350)
                      |||+||+++|.+++||++|.+++.+|+++++++++.|.+++| +++++++|||+|++|++++|+ +|+|++|||.
T Consensus        80 ~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv~t~~a~k~asg~p~~rvia  154 (154)
T d1y7ta1          80 DADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTA  154 (154)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEE
T ss_pred             cccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHHHHHHHHHHcCCCcHHhccC
Confidence            999999999999999999999999999999999999999985 799999999999999999886 7999999974

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.95  E-value=1.3e-28  Score=211.58  Aligned_cols=145  Identities=19%  Similarity=0.297  Sum_probs=125.1

Q ss_pred             CCCCCCeEEEEcC-ChhHHHHHHHHHhcCCCC-----eEEEEeCCc--cchHHHHHHHHHHhhcCCCceEEEcCC-cccc
Q 018760           33 PTKRHTKISVIGT-GNVGMAIAQTILTQDFVE-----ELALVDAKA--DKLRGEMLDLQHAAAFLPRTKILASVD-YAVT  103 (350)
Q Consensus        33 ~~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~-----ev~L~D~~~--~~l~~~~~dl~~~~~~~~~~~v~~t~~-~~al  103 (350)
                      .++++.||+|+|| |++|+++++.|++.++++     +|+|+|+++  +++++..+|++|+.... ...+..+++ ++++
T Consensus        20 ~~k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~-~~~~~~~~~~~~~~   98 (175)
T d7mdha1          20 SWKKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPL-LREVSIGIDPYEVF   98 (175)
T ss_dssp             -CCCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT-EEEEEEESCHHHHT
T ss_pred             ccCCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccccccc-ccCccccccchhhc
Confidence            4556789999998 999999999999987653     788999866  56788899999876422 233444445 6899


Q ss_pred             CCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCC-CeEEEEEcCCcchHHHHHHHH-hCCCCCcEeee
Q 018760          104 AGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSP-DCILLIVANPVDILTYVAWKL-SGLPSNRVIGS  178 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNP~~~~~~~~~~~-sg~~~~rviG~  178 (350)
                      +++|+||+++|.|++||++|.|++.+|+++++++++.|.+++| +++|+++|||+|++|++++++ +++|++||+|+
T Consensus        99 ~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~t~ia~k~a~~ip~~~i~~m  175 (175)
T d7mdha1          99 EDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHAL  175 (175)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEEC
T ss_pred             cCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHHHHHHHHHCCCCCHHHEeCC
Confidence            9999999999999999999999999999999999999999986 789999999999999999996 79999999885

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.95  E-value=3.5e-28  Score=208.16  Aligned_cols=155  Identities=17%  Similarity=0.232  Sum_probs=130.2

Q ss_pred             CCccHHHHHHHHHHHcCCCCcceEEEEEeec-CCceeeeecceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHH
Q 018760          180 TNLDSSRFRFLLADHLDVNAQDVQAYIVGEH-GDSSVALWSSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEV  258 (350)
Q Consensus       180 ~~ld~~r~~~~la~~l~v~p~~v~~~v~G~h-g~~~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v  258 (350)
                      |.||++|++++||++|+++|++|+++|+|+| |++++||||++.+++.            +..++++++.++++++++++
T Consensus         2 T~LDs~R~~~~la~~l~v~~~~V~~~ViGeHg~~t~vp~~s~~~~~~~------------~~~~~~~~l~~~v~~~~~ei   69 (169)
T d1mlda2           2 TTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVD------------FPQDQLSTLTGRIQEAGTEV   69 (169)
T ss_dssp             CHHHHHHHHHHHHHHTTCCGGGCBCCEEECSSGGGEEECGGGCBSCCC------------CCHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHCcCHHHeeEEEEEcCCCcceeehhhhhccCCC------------CcHHHHHHHHHHHHHhHHHH
Confidence            7799999999999999999999999999999 6677787787765542            34567788999999999999


Q ss_pred             HHhcCC---cchHHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecC-CCCHHHHHHH
Q 018760          259 ISLKGY---TSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNI-HLNQEESHRL  334 (350)
Q Consensus       259 ~~~kg~---~~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~-~L~~~E~~~l  334 (350)
                      ++.|+.   ..++++.++++++.+++++.+...++.+...+.|+.. +++|||+||+||++|++++.++ +|+++|+++|
T Consensus        70 i~~k~~~~~~~~~~~~a~~~~~~~i~~~~~~~~~v~~~~~~~~~~~-~~v~~s~P~~ig~~Gi~~v~~l~~L~~~E~~~l  148 (169)
T d1mlda2          70 VKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQET-DCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMI  148 (169)
T ss_dssp             HHHHTTSCSCCHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEECCSS-SSSEEEEEEEEETTEEEEECCCCSCCHHHHHHH
T ss_pred             HHhhcCcChHhHHHHHHHHHHHHHhccccCCceEEEEEeecccccc-CCEeEeeeEEEcCCccEEEecCCCCCHHHHHHH
Confidence            998864   4567888999999998876554445555555566665 4899999999999999999998 7999999999


Q ss_pred             HHHHHHHHHHHHH
Q 018760          335 RNSAKTILEVQSQ  347 (350)
Q Consensus       335 ~~sa~~i~~~~~~  347 (350)
                      ++|++.||+.+++
T Consensus       149 ~~s~~~lk~~I~~  161 (169)
T d1mlda2         149 AEAIPELKASIKK  161 (169)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998875

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.95  E-value=6.5e-29  Score=209.60  Aligned_cols=142  Identities=22%  Similarity=0.316  Sum_probs=118.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCC-----CeEEEEeCCcc--chHHHHHHHHHHhhcCCCceEEEcCC-ccccCCC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFV-----EELALVDAKAD--KLRGEMLDLQHAAAFLPRTKILASVD-YAVTAGS  106 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~-----~ev~L~D~~~~--~l~~~~~dl~~~~~~~~~~~v~~t~~-~~al~~a  106 (350)
                      +++||+|||| |++|+++++.|++.+++     .+++|+|+++.  ++++..+++.+.. +.....+..+.+ ++++++|
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   80 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCA-LPLLKDVIATDKEEIAFKDL   80 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTC-CTTEEEEEEESCHHHHTTTC
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccc-cccccccccCcccccccCCc
Confidence            5789999997 99999999999987764     37999998764  4444455555543 222233444444 5899999


Q ss_pred             CEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCe-EEEEEcCCcchHHHHHHHHh-CCCCCcEeee
Q 018760          107 DLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDC-ILLIVANPVDILTYVAWKLS-GLPSNRVIGS  178 (350)
Q Consensus       107 DiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a-~viv~tNP~~~~~~~~~~~s-g~~~~rviG~  178 (350)
                      |+||+++|.|+++|++|.+++.+|+++++++++.|.++||++ ++|++|||+|++|++++|++ |+|++||+|+
T Consensus        81 dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~mt~v~~k~s~g~P~~~v~~m  154 (154)
T d5mdha1          81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCL  154 (154)
T ss_dssp             SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEEC
T ss_pred             eEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHHHHHHHHHHcCCCCHHHEeCC
Confidence            999999999999999999999999999999999999999875 57889999999999999999 9999999875

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.95  E-value=4.1e-28  Score=207.62  Aligned_cols=141  Identities=21%  Similarity=0.228  Sum_probs=117.9

Q ss_pred             CCeEEEEcCChhHHHHH--HHHHhcCC--CCeEEEEeCCccchHHHHHHHHHHhh---cCCCceEEEcCCc-cccCCCCE
Q 018760           37 HTKISVIGTGNVGMAIA--QTILTQDF--VEELALVDAKADKLRGEMLDLQHAAA---FLPRTKILASVDY-AVTAGSDL  108 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a--~~l~~~~~--~~ev~L~D~~~~~l~~~~~dl~~~~~---~~~~~~v~~t~~~-~al~~aDi  108 (350)
                      +|||+|||||++|.+.+  ..+.....  ..||+|+|+++++.++.++|+.+...   +....++..++|+ ++++|||+
T Consensus         1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDv   80 (169)
T d1s6ya1           1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADF   80 (169)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCE
Confidence            47999999999886543  44444443  25999999999887777888876543   2346788888886 78999999


Q ss_pred             EEEecCCCcCccccHHHH--------------------HHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHh
Q 018760          109 CIVTAGARQIAGESRLNL--------------------LQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLS  168 (350)
Q Consensus       109 VIi~~g~~~~~g~~r~~~--------------------~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~s  168 (350)
                      ||++++.+++++++|+++                    +.+|++++++++++|+++|||||+|++|||+|++|++++|++
T Consensus        81 Vv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPvdv~t~~~~k~~  160 (169)
T d1s6ya1          81 VTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYT  160 (169)
T ss_dssp             EEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHC
T ss_pred             EEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChHHHHHHHHHHHC
Confidence            999999998888777665                    568999999999999999999999999999999999999984


Q ss_pred             CCCCCcEeeecC
Q 018760          169 GLPSNRVIGSGT  180 (350)
Q Consensus       169 g~~~~rviG~g~  180 (350)
                        |++||||+ |
T Consensus       161 --p~~kviGl-C  169 (169)
T d1s6ya1         161 --KQEKVVGL-C  169 (169)
T ss_dssp             --CCCCEEEC-C
T ss_pred             --CCCCEEee-C
Confidence              77899999 7

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=2.2e-27  Score=202.69  Aligned_cols=154  Identities=21%  Similarity=0.258  Sum_probs=134.1

Q ss_pred             CCccHHHHHHHHHHHcCCCCcceEEEEEeecCCceeeee-cceeecCccccccchhhhccCCHHHHHHHHHHHHhhHHHH
Q 018760          180 TNLDSSRFRFLLADHLDVNAQDVQAYIVGEHGDSSVALW-SSISVGGVPILSFLEKQQIAYEKETLESIHKEVVDSAYEV  258 (350)
Q Consensus       180 ~~ld~~r~~~~la~~l~v~p~~v~~~v~G~hg~~~vp~~-S~~~v~g~p~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~v  258 (350)
                      |.||++|+++++|+++|++|++|+++|+|+||+++++.| |++...             .++.++++++.++++.++.++
T Consensus         2 T~LDs~R~~~~iA~~l~v~~~~V~~~ViGghg~~~~~p~~s~~~~~-------------~~~~~~~~~l~~~v~~~g~~i   68 (167)
T d2cmda2           2 TTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGV-------------SFTEQEVADLTKRIQNAGTEV   68 (167)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGCCCCEEECSSTTTEEECGGGCTTC-------------CCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHCcCHHHeEEEEEEcCCCceEeeecccccCC-------------CCcHHHHHHHHHHHHhhhhhh
Confidence            679999999999999999999999999999976555445 544211             245677888999999999999


Q ss_pred             HHhc---CCcchHHHHHHHHHHHHHHhcCCCeEEEEEEeccccCCCCCCeEEEEeEEEcCCceEEeecC-CCCHHHHHHH
Q 018760          259 ISLK---GYTSWAIGYSAANLARSIIRDQRKIHPVSVLAKGFYGIDGGDVFLSLPAQLGRGGVLGVTNI-HLNQEESHRL  334 (350)
Q Consensus       259 ~~~k---g~~~~~~a~a~~~ii~ai~~~~~~v~~v~v~~~g~~gi~~~~~~~s~Pv~ig~~Gv~~v~~~-~L~~~E~~~l  334 (350)
                      ++.+   +++.|++|.++++++.+++++.+...++++...++|+.+ +++|||+||++|++|++.+.++ +|+++|+++|
T Consensus        69 i~~~~~~~~~~~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~i~~s~P~~ig~~Gv~~v~~l~~L~~~E~~~l  147 (167)
T d2cmda2          69 VEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQ-YARFFSQPLLLGKNGVEERKSIGTLSAFEQNAL  147 (167)
T ss_dssp             HHHHTTSCSCCHHHHHHHHHHHHHHHHHHTTCSSCEEEEEEECCCS-SCSEEEEEEEEETTEEEEECCCCCCCHHHHHHH
T ss_pred             hhhhccCcchHHHHHHHHHHHHHHHhccCCCceEEEEEcccccccC-CCccccccEEEeCCceEEEeeCCCCCHHHHHHH
Confidence            9765   566899999999999999999888888888888888876 5899999999999999999998 6999999999


Q ss_pred             HHHHHHHHHHHHH
Q 018760          335 RNSAKTILEVQSQ  347 (350)
Q Consensus       335 ~~sa~~i~~~~~~  347 (350)
                      ++|+++|++.+++
T Consensus       148 ~~s~~~lk~~I~~  160 (167)
T d2cmda2         148 EGMLDTLKKDIAL  160 (167)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998875

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.95  E-value=9.9e-28  Score=204.34  Aligned_cols=140  Identities=19%  Similarity=0.256  Sum_probs=118.3

Q ss_pred             CCCCeEEEEcCChhHHHHHH-HHHh-cC-C-CCeEEEEeCCccchHHHHHHHHHHhhc-CCCceEEEcCCc-cccCCCCE
Q 018760           35 KRHTKISVIGTGNVGMAIAQ-TILT-QD-F-VEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILASVDY-AVTAGSDL  108 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~-~l~~-~~-~-~~ev~L~D~~~~~l~~~~~dl~~~~~~-~~~~~v~~t~~~-~al~~aDi  108 (350)
                      ++..||+|||||++|.+.+. .++. .. + .+||+|+|+|++++++.++++.+.... ....++..++|+ ++++|||+
T Consensus         1 ~k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~   80 (167)
T d1u8xx1           1 KKSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDF   80 (167)
T ss_dssp             CCCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSE
T ss_pred             CCCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCE
Confidence            46689999999999988653 3333 22 2 369999999999999888888876542 345678878886 78999999


Q ss_pred             EEEecCCCcCccccHHHHH--------------------HhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHh
Q 018760          109 CIVTAGARQIAGESRLNLL--------------------QRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLS  168 (350)
Q Consensus       109 VIi~~g~~~~~g~~r~~~~--------------------~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~s  168 (350)
                      ||+++|.++++|++|.+++                    .+|+++++++++.|+++||+||+|++|||+|++|++++|+ 
T Consensus        81 Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TNPvdv~t~~~~k~-  159 (167)
T d1u8xx1          81 VMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRL-  159 (167)
T ss_dssp             EEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHH-
T ss_pred             EEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHHHH-
Confidence            9999999999999988875                    4679999999999999999999999999999999999998 


Q ss_pred             CCCCCcEe
Q 018760          169 GLPSNRVI  176 (350)
Q Consensus       169 g~~~~rvi  176 (350)
                       +|++|||
T Consensus       160 -~P~~rVI  166 (167)
T d1u8xx1         160 -RPNSKIL  166 (167)
T ss_dssp             -STTCCEE
T ss_pred             -CCccccc
Confidence             5889997

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=7.4e-27  Score=200.09  Aligned_cols=139  Identities=19%  Similarity=0.244  Sum_probs=114.8

Q ss_pred             CCCeEEEEcCChhHHHHHH--HHHhc-CC-CCeEEEEeCCccchHHHHHHHHHHhh-cCCCceEEEcCCc-cccCCCCEE
Q 018760           36 RHTKISVIGTGNVGMAIAQ--TILTQ-DF-VEELALVDAKADKLRGEMLDLQHAAA-FLPRTKILASVDY-AVTAGSDLC  109 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~--~l~~~-~~-~~ev~L~D~~~~~l~~~~~dl~~~~~-~~~~~~v~~t~~~-~al~~aDiV  109 (350)
                      ++|||+|||||++|++.+.  .++.. .+ ..||+|+|+|++++++.+.++++... +....++..++|+ ++++|||+|
T Consensus         1 p~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~V   80 (171)
T d1obba1           1 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFV   80 (171)
T ss_dssp             CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             CCcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeE
Confidence            4689999999999988643  34433 33 36999999999999999999998764 3456789988886 789999999


Q ss_pred             EEecCCCc------------------CccccHHHH--------HHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHH
Q 018760          110 IVTAGARQ------------------IAGESRLNL--------LQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYV  163 (350)
Q Consensus       110 Ii~~g~~~------------------~~g~~r~~~--------~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~  163 (350)
                      |++++.+.                  .++++|.++        +.+|+++++++++.|+++||+||+|++|||+|++|++
T Consensus        81 v~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~TNPvdv~t~~  160 (171)
T d1obba1          81 INTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTL  160 (171)
T ss_dssp             EECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHH
T ss_pred             eeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEECChHHHHHHH
Confidence            99977643                  334444443        5689999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCcEee
Q 018760          164 AWKLSGLPSNRVIG  177 (350)
Q Consensus       164 ~~~~sg~~~~rviG  177 (350)
                      ++|++++   |+||
T Consensus       161 ~~k~~~~---k~iG  171 (171)
T d1obba1         161 VTRTVPI---KAVG  171 (171)
T ss_dssp             HHHHSCS---EEEE
T ss_pred             HHHhcCC---CccC
Confidence            9999886   8887

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=3.3e-27  Score=200.67  Aligned_cols=137  Identities=17%  Similarity=0.245  Sum_probs=110.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHhc--C--CCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           38 TKISVIGTGNVGMAIAQTILTQ--D--FVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~--~--~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      |||+|||||++|.+.+...+..  .  ..+||+|+|+|+++++ .+.|+.+.... ...++..+++. ++++|||+||++
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~-~~~d~~~~~~~-~~~~~~~t~~~~~~l~~aDvVVit   78 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQK-IVVDFVKRLVK-DRFKVLISDTFEGAVVDAKYVIFQ   78 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHH-HHHHHHHHHHT-TSSEEEECSSHHHHHTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHH-HHHHHHHhhhc-cCceEEEecCcccccCCCCEEEEe
Confidence            7999999999999988653322  1  2479999999999887 46677766533 24556666664 789999999999


Q ss_pred             cCCCcCccccHHHHH--------------------HhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCC
Q 018760          113 AGARQIAGESRLNLL--------------------QRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPS  172 (350)
Q Consensus       113 ~g~~~~~g~~r~~~~--------------------~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~  172 (350)
                      +|.+++++++|++++                    .|+++++.++.+ +.++||+||+|++|||+|++|++++|++  |+
T Consensus        79 a~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~-~~~~~p~a~~i~vtNPvdiit~~~~~~~--p~  155 (162)
T d1up7a1          79 FRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVD-TVRKTSNATIVNFTNPSGHITEFVRNYL--EY  155 (162)
T ss_dssp             CCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHH-HHHHTTCCEEEECSSSHHHHHHHHHHTT--CC
T ss_pred             cccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhh-hhccCCCeEEEEeCCHHHHHHHHHHHhC--CC
Confidence            999988888777664                    456677777755 7788999999999999999999999985  66


Q ss_pred             CcEeeecC
Q 018760          173 NRVIGSGT  180 (350)
Q Consensus       173 ~rviG~g~  180 (350)
                      +||||+ |
T Consensus       156 ~rviGl-C  162 (162)
T d1up7a1         156 EKFIGL-C  162 (162)
T ss_dssp             SSEEEC-C
T ss_pred             CCEEee-C
Confidence            899999 7

>d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.38  E-value=7.8e-12  Score=112.09  Aligned_cols=146  Identities=21%  Similarity=0.251  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHcCCCCcceEEEEEe-ecCCceeeeecceeecCccccccchhh----------------------------
Q 018760          185 SRFRFLLADHLDVNAQDVQAYIVG-EHGDSSVALWSSISVGGVPILSFLEKQ----------------------------  235 (350)
Q Consensus       185 ~r~~~~la~~l~v~p~~v~~~v~G-~hg~~~vp~~S~~~v~g~p~~~~~~~~----------------------------  235 (350)
                      .-+.+.+|+.+|+++++|+..+.| ||    +.|+.+++++|+++...+.+.                            
T Consensus         4 i~~~~~la~~lg~~~~~v~~~~~GlNH----~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~Y   79 (253)
T d1up7a2           4 INFIREIAEMFSARLEDVFLKYYGLNH----LSFIEKVFVKGEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNPY   79 (253)
T ss_dssp             HHHHHHHHHHTTCCGGGEEEEEEEETT----EEEEEEEEETTEECHHHHHHHHTTC---CCTTSCCHHHHHHHCSEECGG
T ss_pred             HHHHHHHHHHhCCCHHHcEEEEEEECC----hhheEeeEECCEechHHHHHHHHHhccCCccccCcHHHHHhcCeeEccc
Confidence            457889999999999999999999 99    999999999998765432110                            


Q ss_pred             -hc-cCCHHHHHHHHHHHHhhHHHHHH--------------------hcCCcchHHHHHHHHHHHHHHhcCCCeEEEEEE
Q 018760          236 -QI-AYEKETLESIHKEVVDSAYEVIS--------------------LKGYTSWAIGYSAANLARSIIRDQRKIHPVSVL  293 (350)
Q Consensus       236 -~~-~~~~~~~~~i~~~v~~~~~~v~~--------------------~kg~~~~~~a~a~~~ii~ai~~~~~~v~~v~v~  293 (350)
                       .| +++++.++++... .+++.+++.                    .++...|+  ..++.++.||+++.+.++.++|.
T Consensus        80 l~Yy~~~~~~~~~~~~~-~tra~~v~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~--e~a~~ii~ai~~~~~~~~~vNv~  156 (253)
T d1up7a2          80 LRYYLMEKKMFKKISTH-ELRAREVMKIEKELFEKYRTAVEIPEELTKRGGSMYS--TAAAHLIRDLETDEGKIHIVNTR  156 (253)
T ss_dssp             GHHHHTHHHHHHHHHTS-CCHHHHHHHHHHHHHHHHTTCSSCCGGGGGSTTTTHH--HHHHHHHHHHHSSSCEEEEEEEE
T ss_pred             chhhcCcHHHHHHhccc-cChHHHHHHHHHHHHHHHHHHhhhhhhhhhccCcchH--HHHHHHHHHHHcCCCcEEEEeCC
Confidence             01 1122223322211 112333321                    12333444  78899999999999999999999


Q ss_pred             ecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHH
Q 018760          294 AKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA  338 (350)
Q Consensus       294 ~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa  338 (350)
                      |+|.. ++| +|+++++||.|+++|++++.-.+|++....+++.-.
T Consensus       157 N~G~I~~Lp-~d~vVEVp~~V~~~Gi~P~~~g~lP~~~~~Li~~~~  201 (253)
T d1up7a2         157 NNGSIENLP-DDYVLEIPCYVRSGRVHTLSQGKGDHFALSFIHAVK  201 (253)
T ss_dssp             CTTSSTTSC-TTCEEEEEEEEETTEEEEBCCCCCCHHHHHHHHHHH
T ss_pred             CcCcCCCCC-hhhheEEEEEecCCcccccccCCCcHHHHHHHHHHH
Confidence            99996 898 699999999999999999999999998877766543

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.7e-12  Score=110.55  Aligned_cols=123  Identities=22%  Similarity=0.318  Sum_probs=90.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh------cC------------CCceEEEcCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA------FL------------PRTKILASVD   99 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~------~~------------~~~~v~~t~~   99 (350)
                      .||+|||||.||+.+|..++..|+  +|+|+|++++.++.....++....      ..            ...++..++|
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d   82 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTD   82 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC--cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccch
Confidence            499999999999999999999997  999999999877644433332210      00            0135666778


Q ss_pred             c-cccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          100 Y-AVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       100 ~-~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                      + +++++||+|+.++              .+|.++.+++..++.+++|.. .|++||.+.+...-+...+. .|.|++|+
T Consensus        83 ~~~a~~~ad~ViEav--------------~E~l~~K~~v~~~l~~~~~~~-~ilasnTS~l~i~~la~~~~-~p~r~ig~  146 (192)
T d1f0ya2          83 AASVVHSTDLVVEAI--------------VENLKVKNELFKRLDKFAAEH-TIFASNTSSLQITSIANATT-RQDRFAGL  146 (192)
T ss_dssp             HHHHTTSCSEEEECC--------------CSCHHHHHHHHHHHTTTSCTT-CEEEECCSSSCHHHHHTTSS-CGGGEEEE
T ss_pred             hHhhhcccceehhhc--------------ccchhHHHHHHHHHhhhcccC-ceeeccCcccccchhhhhcc-CHhHEEee
Confidence            6 6799999999995              257899999999999997655 45789988874433333333 35677754

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.31  E-value=1.9e-12  Score=110.91  Aligned_cols=124  Identities=14%  Similarity=0.153  Sum_probs=90.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh----hcC---------CCceEEEcCCcccc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA----AFL---------PRTKILASVDYAVT  103 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~----~~~---------~~~~v~~t~~~~al  103 (350)
                      -.||+|||||.||+.+|..++..|+  +|+|+|++++.++.....+....    ...         ...++..+++++++
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   81 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDF   81 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTG
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC--eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccccc
Confidence            4589999999999999999999996  99999999987764433333221    000         12346667778899


Q ss_pred             CCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeee
Q 018760          104 AGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~  178 (350)
                      .+||+||.++.              +|.++.+++..+|.+++|.. .|++||.+.+....+..... .|.|++|+
T Consensus        82 ~~adlViEav~--------------E~l~~K~~lf~~l~~~~~~~-~IiaSnTS~l~i~~la~~~~-~p~r~~g~  140 (186)
T d1wdka3          82 GNVDLVVEAVV--------------ENPKVKQAVLAEVENHVRED-AILASNTSTISISLLAKALK-RPENFVGM  140 (186)
T ss_dssp             GGCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTT-CEEEECCSSSCHHHHGGGCS-CGGGEEEE
T ss_pred             cccceeeeeec--------------chHHHHHHHHHHHHhhcCCC-eeEEeccccccHHHHHHhcc-CchheEee
Confidence            99999999952              47899999999999998655 45799998885444433332 34666644

>d1s6ya2 d.162.1.2 (A:173-445) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.31  E-value=5.9e-11  Score=107.33  Aligned_cols=148  Identities=18%  Similarity=0.237  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHcCCCCcceEEEEEe-ecCCceeeeecceeecCccccccchhh----------------------------
Q 018760          185 SRFRFLLADHLDVNAQDVQAYIVG-EHGDSSVALWSSISVGGVPILSFLEKQ----------------------------  235 (350)
Q Consensus       185 ~r~~~~la~~l~v~p~~v~~~v~G-~hg~~~vp~~S~~~v~g~p~~~~~~~~----------------------------  235 (350)
                      .-+.+.+|+.||+++++|+..+.| ||    +.|+.+++++|.++...+.+.                            
T Consensus         4 i~~~~~la~~Lg~~~~~i~~~~~GlNH----~~W~~~~~~~G~D~~p~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (270)
T d1s6ya2           4 IGMRMGVAKLLGVDADRVHIDFAGLNH----MVFGLHVYLDGVEVTEKVIDLVAHPDRSGVTMKNIVDLGWEPDFLKGLK   79 (270)
T ss_dssp             HHHHHHHHHHHTSCGGGEEEEEEEETT----EEEEEEEEETTEECHHHHHHHHSCC------------CCCCHHHHHHHC
T ss_pred             HHHHHHHHHHcCCCHHHcEEEEEeeCC----HhHeeeeEECCccccHHHHHHHhcccccccccccccccCcCHHHHHhcc
Confidence            346778999999999999999999 99    999999999998765433210                            


Q ss_pred             -------hccC-CHHHHHHHHHHHH---hhH-------HHHHH---------------hcCCcchHHHHHHHHHHHHHHh
Q 018760          236 -------QIAY-EKETLESIHKEVV---DSA-------YEVIS---------------LKGYTSWAIGYSAANLARSIIR  282 (350)
Q Consensus       236 -------~~~~-~~~~~~~i~~~v~---~~~-------~~v~~---------------~kg~~~~~~a~a~~~ii~ai~~  282 (350)
                             .+++ .++.+.+....-.   .+.       .+..+               .+++..|  +..++.++.||++
T Consensus        80 ~~p~~y~~yy~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~--~e~a~~ii~ai~~  157 (270)
T d1s6ya2          80 VLPCPYHRYYFQTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAIKPPQLEKRGGAYY--SDAACSLISSIYN  157 (270)
T ss_dssp             SBCCGGGHHHHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCC-----------CCSCCH--HHHHHHHHHHHHH
T ss_pred             cEeccccccccccHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHhHHhccCcchhhhccCcch--HHHHHHHHHHHhc
Confidence                   0011 1111111111101   011       11110               1122233  4789999999999


Q ss_pred             cCCCeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHHH
Q 018760          283 DQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSAK  339 (350)
Q Consensus       283 ~~~~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa~  339 (350)
                      |.+.++.++|.|+|.. ++| +|+++++||+|+++|++++.-.+|++....+++....
T Consensus       158 ~~~~~~~vNv~N~G~I~nLp-~d~vVEVp~~V~~~Gi~P~~~g~lP~~~~~Li~~~~~  214 (270)
T d1s6ya2         158 DKRDIQPVNTRNNGAIASIS-AESAVEVNCVITKDGPKPIAVGDLPVAVRGLVQQIKS  214 (270)
T ss_dssp             TCCCEEEEEEECTTSBTTSC-TTSEEEEEEEEETTEEEECCCBCCCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcCCCCC-ccceEEEEEEEECCceEeeecCCCcHHHHHHHHHHHH
Confidence            9999999999999996 898 6999999999999999999989999998887766543

>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.29  E-value=1.6e-11  Score=111.40  Aligned_cols=150  Identities=17%  Similarity=0.226  Sum_probs=106.8

Q ss_pred             CCccHHHHHHHHHHHcCCCC-cceEEEEEe-ecCCceeeeeccee-ecCccccccchhh---------------------
Q 018760          180 TNLDSSRFRFLLADHLDVNA-QDVQAYIVG-EHGDSSVALWSSIS-VGGVPILSFLEKQ---------------------  235 (350)
Q Consensus       180 ~~ld~~r~~~~la~~l~v~p-~~v~~~v~G-~hg~~~vp~~S~~~-v~g~p~~~~~~~~---------------------  235 (350)
                      |+.+ .-+++.+|+.||++| ++|+..+.| ||    +.||.+++ .+|+++...+.+.                     
T Consensus         2 C~~p-~~~~~~ia~~Lgv~~~~ev~~~~~GLNH----~~w~~~v~~~~G~D~~p~l~e~~~~~~~~~~~~~~~~~~~~~~   76 (276)
T d1u8xx2           2 CDMP-VGIEDRMAQILGLSSRKEMKVRYYGLNH----FGWWTSIQDQEGNDLMPKLKEHVSQYGYIPKTEAEAVEASWND   76 (276)
T ss_dssp             CSHH-HHHHHHHHHHHTCSCGGGEEEEEEEETT----EEEEEEEEETTCCBCHHHHHHHHHHHSSCCCC-------CTTS
T ss_pred             CCch-HHHHHHHHHHcCCCchhceEEEEEeecc----HHHHhheeccCCEECHHHHHHHHHhcCCCCcccccccccccHH
Confidence            6664 568889999999987 579999999 99    99999998 6888765433210                     


Q ss_pred             ---------------------hccCCHH-HHHHHHHHHHhhHHHHHHhc----------------------CCcchHHHH
Q 018760          236 ---------------------QIAYEKE-TLESIHKEVVDSAYEVISLK----------------------GYTSWAIGY  271 (350)
Q Consensus       236 ---------------------~~~~~~~-~~~~i~~~v~~~~~~v~~~k----------------------g~~~~~~a~  271 (350)
                                           .|++..+ .++.+. .-.+++.++++..                      +...|  +.
T Consensus        77 ~~~~~~~~~~~~~~~~p~~Yl~Yy~~~~~~~~~~~-~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e  153 (276)
T d1u8xx2          77 TFAKARDVQAADPDTLPNTYLQYYLFPDDMVKKSN-PNHTRANEVMEGREAFIFSQCDMITREQSSENSEIKIDDH--AS  153 (276)
T ss_dssp             HHHHHHHHHHTSTTSEECGGGHHHHSHHHHHTTSC-SSSCHHHHHHHHTTTTTTTTHHHHHHHTSCCSCSSCCCTT--TH
T ss_pred             HHHHHhCCcccCCcccchhHHHhccchHHHHHHhc-cCCCcHHHHHHHHHHHHHHhHHhhcccccchhhcccCCch--HH
Confidence                                 0011111 001000 0112233443211                      11223  46


Q ss_pred             HHHHHHHHHHhcCCCeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCCHHHHHHHHHHH
Q 018760          272 SAANLARSIIRDQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLNQEESHRLRNSA  338 (350)
Q Consensus       272 a~~~ii~ai~~~~~~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~~~E~~~l~~sa  338 (350)
                      .+++++.||.++.+.++.++|.|+|.. ++| +|+++++||+|+++|+.++.-.+|++....+++.-.
T Consensus       154 ~av~ii~ai~~~~~~~~~vNv~N~G~I~~Lp-~d~vVEVp~~V~~~Gi~P~~~g~lP~~~~~Li~~~k  220 (276)
T d1u8xx2         154 YIVDLARAIAYNTGERMLLIVENNGAIANFD-PTAMVEVPCIVGSNGPEPITVGTIPQFQKGLMEQQV  220 (276)
T ss_dssp             HHHHHHHHHHHTCCEEEEEEEECTTSBTTSC-TTSEEEEEEEEETTEEEECCCBCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCcEEEEEeCCCCcCCCCC-hhhheeeEEEEcCCceEeeecCCCcHHHHHHHHHHH
Confidence            789999999999999999999999995 898 699999999999999999999999998877776533

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.10  E-value=4.4e-10  Score=97.00  Aligned_cols=160  Identities=19%  Similarity=0.200  Sum_probs=100.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHH------------HHHHHhhcCCCceEEEcCCc-cccC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEML------------DLQHAAAFLPRTKILASVDY-AVTA  104 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~------------dl~~~~~~~~~~~v~~t~~~-~al~  104 (350)
                      |||+|||+|.||.++|..|+..|.  +|+.+|+|+++++.+..            .+....   ...++..+++. ++++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~--~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~---~~~~~~~~~~~~~~i~   75 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGH--EVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGR---QTGRLSGTTDFKKAVL   75 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC--EEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHH---HTTCEEEESCHHHHHH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCC--cEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhh---cccccccCCCHHHHHh
Confidence            899999999999999999999996  99999999987764210            111111   13456667786 6799


Q ss_pred             CCCEEEEecCCCcCcc-ccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc-CCcchHHHH----HHHHhCCCCCcEeee
Q 018760          105 GSDLCIVTAGARQIAG-ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA-NPVDILTYV----AWKLSGLPSNRVIGS  178 (350)
Q Consensus       105 ~aDiVIi~~g~~~~~g-~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t-NP~~~~~~~----~~~~sg~~~~rviG~  178 (350)
                      +||++++++++|.... ......+   ..+.+.+...++...++.++|+-| -|.......    +.+.++....+-|.+
T Consensus        76 ~~d~i~i~VpTP~~~~~~~d~~~~---~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~  152 (202)
T d1mv8a2          76 DSDVSFICVGTPSKKNGDLDLGYI---ETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGV  152 (202)
T ss_dssp             TCSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEE
T ss_pred             hCCEEEEecCccccccccccchhh---hhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccc
Confidence            9999999999986442 2222222   244455555556666777777764 677665443    344445444343444


Q ss_pred             cCCccHHHHHHHHHHHcCCCCcceEEEEEeec
Q 018760          179 GTNLDSSRFRFLLADHLDVNAQDVQAYIVGEH  210 (350)
Q Consensus       179 g~~ld~~r~~~~la~~l~v~p~~v~~~v~G~h  210 (350)
                      ....|-.+....+-+..+.+.     .|+|..
T Consensus       153 ~~~PE~~~~G~a~~d~~~~~~-----iViG~~  179 (202)
T d1mv8a2         153 GTNPEFLRESTAIKDYDFPPM-----TVIGEL  179 (202)
T ss_dssp             EECCCCCCTTSHHHHHHSCSC-----EEEEES
T ss_pred             hhhhhhhcccchhhhhcCCCe-----EEEEeC
Confidence            344443433444555543322     567754

>d1obba2 d.162.1.2 (A:173-480) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.09  E-value=1.5e-09  Score=99.68  Aligned_cols=62  Identities=24%  Similarity=0.405  Sum_probs=54.7

Q ss_pred             HHHHHHHHHhcCCCeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEee-cCCCCHHHHH-HHH
Q 018760          273 AANLARSIIRDQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVT-NIHLNQEESH-RLR  335 (350)
Q Consensus       273 ~~~ii~ai~~~~~~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~-~~~L~~~E~~-~l~  335 (350)
                      +++++.||.+|.+.++.++|.|+|.. ++| +|.+++|||+|+++|++|+. ..+|++.-.. +++
T Consensus       184 a~~ii~ai~~~~~~~~~vNv~N~G~I~nLp-~davVEVpc~v~~~Gi~P~~v~~~lP~~~~~gl~~  248 (308)
T d1obba2         184 HIPFIDALLNDNKARFVVNIPNKGIIHGID-DDVVVEVPALVDKNGIHPEKIEPPLPDRVVKYYLR  248 (308)
T ss_dssp             HHHHHHHHHHCCCEEEEEEEECTTSSTTSC-TTSEEEEEEEEETTEEEECCCSSCCCHHHHHHTHH
T ss_pred             HHHHHHHHHcCCCeEEEEECCCCCcCCCCC-ccceEEEEEEEeCCceeeeecCCCCChHHHHHHHH
Confidence            88999999999999999999999995 898 69999999999999999997 4789986544 443

>d1vjta2 d.162.1.2 (A:192-469) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Putative alpha-glucosidase TM0752
species: Thermotoga maritima [TaxId: 2336]

Probab=98.99  E-value=4.9e-09  Score=94.78  Aligned_cols=56  Identities=16%  Similarity=0.115  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHhcCCCeEEEEEEecccc-CCCCCCeEEEEeEEEcCCceEEeecCCCC
Q 018760          271 YSAANLARSIIRDQRKIHPVSVLAKGFY-GIDGGDVFLSLPAQLGRGGVLGVTNIHLN  327 (350)
Q Consensus       271 ~a~~~ii~ai~~~~~~v~~v~v~~~g~~-gi~~~~~~~s~Pv~ig~~Gv~~v~~~~L~  327 (350)
                      ..+++++.||.+|++.++.++|.|+|.. ++| +|+++++||.|+++|++++.-.++.
T Consensus       153 e~a~~ii~ai~~~~~~~~~vNv~N~G~I~nLp-~davVEVpc~Vd~~Gi~P~~vg~~~  209 (278)
T d1vjta2         153 EQHIPFINAIANNKRVRLFLNVENQGTLKDFP-DDVVMELPVWVDCCGIHREKVEPDL  209 (278)
T ss_dssp             CSHHHHHHHHHHCCCEEEEEEEECTTSSTTSC-SSSEEEEEEEEETTEEEECCCCSCC
T ss_pred             HHHHHHHHHHhCCCCeEEEEECCCCCcCCCCC-chhheEeEEEEeCCceeeeecCCCC
Confidence            5678999999999999999999999996 898 6999999999999999998766543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.84  E-value=4.9e-09  Score=87.97  Aligned_cols=98  Identities=19%  Similarity=0.273  Sum_probs=65.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh---cCC-----CceEEEcCCc-cccCCCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA---FLP-----RTKILASVDY-AVTAGSD  107 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~---~~~-----~~~v~~t~~~-~al~~aD  107 (350)
                      ++||+|||||.||..+|..|+++|.  +|.++|+++++++.    +.....   +.+     ......+++. +++++||
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~--~V~~~~r~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD   74 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ--SVLAWDIDAQRIKE----IQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDAD   74 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHH----HHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC--EEEEEECCHHHHHH----HHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCC
Confidence            3699999999999999999999996  99999999887763    222210   111     1112234555 6799999


Q ss_pred             EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCC
Q 018760          108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANP  156 (350)
Q Consensus       108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP  156 (350)
                      +||++....                ..++++++++.+ .++.+++...|.
T Consensus        75 ~iii~v~~~----------------~~~~~~~~i~~~l~~~~~iv~~~g~  108 (184)
T d1bg6a2          75 VILIVVPAI----------------HHASIAANIASYISEGQLIILNPGA  108 (184)
T ss_dssp             EEEECSCGG----------------GHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred             EEEEEEchh----------------HHHHHHHHhhhccCCCCEEEEeCCC
Confidence            999996322                223455555555 566766544443

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.84  E-value=1.7e-08  Score=83.63  Aligned_cols=92  Identities=20%  Similarity=0.250  Sum_probs=63.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCCc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQ  117 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~~  117 (350)
                      |||+|||+|.||+.+|..|.+.+.  +|+.+|+++++++.    .....    ... ...++.+++++||+||++..   
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~----a~~~~----~~~-~~~~~~~~~~~~DiIilavp---   66 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGH--YLIGVSRQQSTCEK----AVERQ----LVD-EAGQDLSLLQTAKIIFLCTP---   66 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHH----HHHTT----SCS-EEESCGGGGTTCSEEEECSC---
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC--EEEEEECCchHHHH----HHHhh----ccc-eeeeecccccccccccccCc---
Confidence            799999999999999999999986  99999999876552    11111    111 22456788999999999862   


Q ss_pred             CccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCC
Q 018760          118 IAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANP  156 (350)
Q Consensus       118 ~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP  156 (350)
                                   ...+.++.+.+..+ .++.+++..++-
T Consensus        67 -------------~~~~~~vl~~l~~~l~~~~iv~~~~s~   93 (165)
T d2f1ka2          67 -------------IQLILPTLEKLIPHLSPTAIVTDVASV   93 (165)
T ss_dssp             -------------HHHHHHHHHHHGGGSCTTCEEEECCSC
T ss_pred             -------------Hhhhhhhhhhhhhhcccccceeecccc
Confidence                         12333444555554 577777666543

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.67  E-value=7.1e-09  Score=88.40  Aligned_cols=72  Identities=19%  Similarity=0.308  Sum_probs=55.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh--h-cC----CCceEEEcCCc-cccCCCC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA--A-FL----PRTKILASVDY-AVTAGSD  107 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~--~-~~----~~~~v~~t~~~-~al~~aD  107 (350)
                      .+.||+|||||++|+++|..|+..+.  +|.|++++++.++    .++...  . +.    ...++.+++|. +++++||
T Consensus         6 ~m~KI~ViGaG~wGtAlA~~La~~g~--~V~l~~r~~~~~~----~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad   79 (189)
T d1n1ea2           6 YLNKAVVFGSGAFGTALAMVLSKKCR--EVCVWHMNEEEVR----LVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAE   79 (189)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTEE--EEEEECSCHHHHH----HHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCS
T ss_pred             eeceEEEECCCHHHHHHHHHHHHcCC--eEEEEEecHHHHH----HHhhcccccccccccccccccccchhhhhccCCCC
Confidence            34589999999999999999999884  9999999987665    343221  1 21    23467788887 6799999


Q ss_pred             EEEEec
Q 018760          108 LCIVTA  113 (350)
Q Consensus       108 iVIi~~  113 (350)
                      +||+++
T Consensus        80 ~iiiav   85 (189)
T d1n1ea2          80 IILFVI   85 (189)
T ss_dssp             CEEECS
T ss_pred             EEEEcC
Confidence            999996

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.62  E-value=1.7e-08  Score=85.22  Aligned_cols=97  Identities=11%  Similarity=0.287  Sum_probs=65.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh---c---CCCceEEEcCCc-cccCCCCEEE
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA---F---LPRTKILASVDY-AVTAGSDLCI  110 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~---~---~~~~~v~~t~~~-~al~~aDiVI  110 (350)
                      |||+|||+|.+|+++|..|+.++.  +|.|+.++.+.  .....++....   +   ....++..++|. +++++||+||
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~--~V~l~~r~~~~--~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii   76 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGN--EVRIWGTEFDT--EILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVL   76 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCC--EEEEECCGGGH--HHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC--EEEEEEecccH--HHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhh
Confidence            899999999999999999999984  99999875432  12334443211   1   124567777776 5799999999


Q ss_pred             EecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          111 VTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       111 i~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ++...                ..++++++++..+-++..+++++
T Consensus        77 ~avps----------------~~~~~~~~~l~~~l~~~~ii~~t  104 (180)
T d1txga2          77 LGVST----------------DGVLPVMSRILPYLKDQYIVLIS  104 (180)
T ss_dssp             ECSCG----------------GGHHHHHHHHTTTCCSCEEEECC
T ss_pred             cccch----------------hhhHHHHHhhccccccceecccc
Confidence            99631                23445556666665555555554

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.61  E-value=1.9e-07  Score=76.26  Aligned_cols=65  Identities=18%  Similarity=0.273  Sum_probs=51.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEec
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTA  113 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~  113 (350)
                      |||++||+|+||.+++..|+..+. .+|.++|+++++++.    +....    .  +..+++.++++++|+||++.
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~-~~i~v~~r~~~~~~~----l~~~~----~--~~~~~~~~~v~~~Div~lav   65 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGG-YRIYIANRGAEKRER----LEKEL----G--VETSATLPELHSDDVLILAV   65 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCS-CEEEEECSSHHHHHH----HHHHT----C--CEEESSCCCCCTTSEEEECS
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCC-CcEEEEeCChhHHHH----hhhhc----c--cccccccccccccceEEEec
Confidence            799999999999999998887773 499999999987763    33322    1  23345667889999999996

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.60  E-value=6.1e-09  Score=85.97  Aligned_cols=101  Identities=20%  Similarity=0.174  Sum_probs=68.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCC-CceEEEcCCccccCCCCEEEEecCCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLP-RTKILASVDYAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~-~~~v~~t~~~~al~~aDiVIi~~g~~  116 (350)
                      |||+|||+|.||+.++..|++.|.  +|.++++++++.+..    ........ ......+.+.+++.++|+||++....
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~--~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~   74 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGH--EVQGWLRVPQPYCSV----NLVETDGSIFNESLTANDPDFLATSDLLLVTLKAW   74 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCCSEEEE----EEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC--ceEEEEcCHHHhhhh----ccccCCccccccccccchhhhhcccceEEEeeccc
Confidence            899999999999999999999986  999999988765431    11100001 11222344557889999999996322


Q ss_pred             cCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchH
Q 018760          117 QIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDIL  160 (350)
Q Consensus       117 ~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~  160 (350)
                          .            ..+..+.+..+ .++..|+.+.|-++..
T Consensus        75 ----~------------~~~~~~~l~~~~~~~~~Iv~~qNG~~~~  103 (167)
T d1ks9a2          75 ----Q------------VSDAVKSLASTLPVTTPILLIHNGMGTI  103 (167)
T ss_dssp             ----G------------HHHHHHHHHTTSCTTSCEEEECSSSCTT
T ss_pred             ----c------------hHHHHHhhccccCcccEEeeccCcccHH
Confidence                1            22334444443 5788888999977654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.53  E-value=3.2e-07  Score=75.97  Aligned_cols=99  Identities=13%  Similarity=0.155  Sum_probs=63.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC-ccccCCCCEEEEecCCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD-YAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~-~~al~~aDiVIi~~g~~  116 (350)
                      .||+|||+|.||.++|..|.+.++..+|+.+|++++.++.    .....   ...... +.. .....++|+||++..  
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~----a~~~~---~~~~~~-~~~~~~~~~~~dlIila~p--   71 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISK----AVDLG---IIDEGT-TSIAKVEDFSPDFVMLSSP--   71 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHH----HHHTT---SCSEEE-SCGGGGGGTCCSEEEECSC--
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHH----HHHhh---cchhhh-hhhhhhhccccccccccCC--
Confidence            4799999999999999999999876689999999876652    22111   111222 222 234568999999952  


Q ss_pred             cCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchH
Q 018760          117 QIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDIL  160 (350)
Q Consensus       117 ~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~  160 (350)
                                    ...+.++.+.+..+ .++.+++-++..-..+
T Consensus        72 --------------~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~  102 (171)
T d2g5ca2          72 --------------VRTFREIAKKLSYILSEDATVTDQGSVKGKL  102 (171)
T ss_dssp             --------------HHHHHHHHHHHHHHSCTTCEEEECCSCCTHH
T ss_pred             --------------chhhhhhhhhhhccccccccccccccccHHH
Confidence                          12233333444443 5777776666543333

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.51  E-value=2e-07  Score=76.87  Aligned_cols=64  Identities=19%  Similarity=0.372  Sum_probs=50.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      |||+|||.|.||+++|..|+..|+  +|..+|+++++++.    +....     ..+  ..+. +.+++||+||++..
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~--~V~~~d~~~~~~~~----~~~~~-----~~~--~~~~~e~~~~~d~ii~~v~   65 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGY--SLVVSDRNPEAIAD----VIAAG-----AET--ASTAKAIAEQCDVIITMLP   65 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC--EEEEECSCHHHHHH----HHHTT-----CEE--CSSHHHHHHHCSEEEECCS
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCC--eEEEEeCCcchhHH----HHHhh-----hhh--cccHHHHHhCCCeEEEEcC
Confidence            799999999999999999999996  99999999876653    33221     122  3344 67999999999964

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.39  E-value=5.8e-07  Score=76.25  Aligned_cols=118  Identities=19%  Similarity=0.245  Sum_probs=72.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHH--------HHHHHhhcCCCceEEEcCCc-cccCCCCE
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEML--------DLQHAAAFLPRTKILASVDY-AVTAGSDL  108 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~--------dl~~~~~~~~~~~v~~t~~~-~al~~aDi  108 (350)
                      |||+|||+|.||.++|..|+ .+.  +|+.+|+|+++++.+..        .+++.... ...++..+++. .+..++|+
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~--~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~-~~~~~~~~~~~~~~~~~~~i   76 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQN--EVTIVDILPSKVDKINNGLSPIQDEYIEYYLKS-KQLSIKATLDSKAAYKEAEL   76 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTS--EEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH-SCCCEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCChhHHHHHHHHH-CCC--cEEEEECCHHHHHHHhhcccccchhhHHHHhhh-hhhhhhccchhhhhhhcccc
Confidence            89999999999999997665 564  99999999987764321        11111111 13345545554 57899999


Q ss_pred             EEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc-CCcchHHHHH
Q 018760          109 CIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA-NPVDILTYVA  164 (350)
Q Consensus       109 VIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t-NP~~~~~~~~  164 (350)
                      ++++.+.|.......     .....+....+.+....+..++++-| -|.+..-.+.
T Consensus        77 i~v~vpt~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~  128 (196)
T d1dlja2          77 VIIATPTNYNSRINY-----FDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMR  128 (196)
T ss_dssp             EEECCCCCEETTTTE-----ECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHH
T ss_pred             ccccCCccccccCCC-----cceeEEeehhhhhhhcccceeEEeeeecCceeeeeee
Confidence            999988775322110     01234444455555556677666654 4555554443

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.35  E-value=2.6e-07  Score=75.55  Aligned_cols=64  Identities=20%  Similarity=0.333  Sum_probs=49.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      |||+|||+|+||++++..|+..+  .++.++|++.++++.    +.....      +..+.+. +.+++||+||+++
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~--~~i~v~~r~~~~~~~----l~~~~g------~~~~~~~~~~~~~~dvIilav   65 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTP--HELIISGSSLERSKE----IAEQLA------LPYAMSHQDLIDQVDLVILGI   65 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSS--CEEEEECSSHHHHHH----HHHHHT------CCBCSSHHHHHHTCSEEEECS
T ss_pred             CEEEEEeccHHHHHHHHHHHhCC--CeEEEEcChHHhHHh----hccccc------eeeechhhhhhhccceeeeec
Confidence            79999999999999999998887  499999999887663    332221      1123455 6689999999996

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.25  E-value=1.5e-06  Score=71.49  Aligned_cols=65  Identities=22%  Similarity=0.339  Sum_probs=50.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ++||++||.|.||+++|..|+++++  +|..+|+++++.+    ++....      ... ..+. +.++++|+|+++..
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~g~--~v~~~d~~~~~~~----~~~~~~------~~~-~~~~~e~~~~~diii~~v~   66 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKAGY--LLNVFDLVQSAVD----GLVAAG------ASA-ARSARDAVQGADVVISMLP   66 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTC--EEEEECSSHHHHH----HHHHTT------CEE-CSSHHHHHTSCSEEEECCS
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHCCC--eEEEEECchhhhh----hhhhhh------ccc-cchhhhhccccCeeeeccc
Confidence            4689999999999999999999996  9999999987654    333221      122 2344 78999999999964

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=98.25  E-value=2e-06  Score=71.54  Aligned_cols=89  Identities=16%  Similarity=0.231  Sum_probs=60.8

Q ss_pred             CccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCc
Q 018760           13 GGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRT   92 (350)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~   92 (350)
                      ||.||..++.    .-..   ..+..+|.|+|+|.++.++++.|.+.+  .+|++++++.++++..+..+....    ..
T Consensus         1 D~~Gf~~~l~----~~~~---~~~~k~vlIlGaGGaarai~~aL~~~~--~~i~I~nR~~~~a~~l~~~~~~~~----~~   67 (171)
T d1p77a1           1 DGIGLVTDLQ----RLNW---LRPNQHVLILGAGGATKGVLLPLLQAQ--QNIVLANRTFSKTKELAERFQPYG----NI   67 (171)
T ss_dssp             HHHHHHHHHH----HTTC---CCTTCEEEEECCSHHHHTTHHHHHHTT--CEEEEEESSHHHHHHHHHHHGGGS----CE
T ss_pred             CHHHHHHHHH----HcCC---CCCCCEEEEECCcHHHHHHHHHHcccC--ceeeeccchHHHHHHHHHHHhhcc----cc
Confidence            4566666654    3232   345568999999999999999998755  599999999988886655554321    22


Q ss_pred             eEEEcCCccccCCCCEEEEecCC
Q 018760           93 KILASVDYAVTAGSDLCIVTAGA  115 (350)
Q Consensus        93 ~v~~t~~~~al~~aDiVIi~~g~  115 (350)
                      ... ..+...+.++|+||.|...
T Consensus        68 ~~~-~~~~~~~~~~diiIN~tp~   89 (171)
T d1p77a1          68 QAV-SMDSIPLQTYDLVINATSA   89 (171)
T ss_dssp             EEE-EGGGCCCSCCSEEEECCCC
T ss_pred             chh-hhccccccccceeeecccc
Confidence            222 1122357899999999643

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=5.3e-06  Score=68.67  Aligned_cols=87  Identities=16%  Similarity=0.172  Sum_probs=59.6

Q ss_pred             CccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCc
Q 018760           13 GGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRT   92 (350)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~   92 (350)
                      ||.||...+.    +...   ..+.++|.|+|||.+++++++.|...+.  +|.+++++.++++..+..+.+.      .
T Consensus         1 Dg~Gf~~~l~----~~~~---~~~~k~vlIlGaGGaarai~~al~~~g~--~i~I~nRt~~ka~~l~~~~~~~------~   65 (170)
T d1nyta1           1 DGVGLLSDLE----RLSF---IRPGLRILLIGAGGASRGVLLPLLSLDC--AVTITNRTVSRAEELAKLFAHT------G   65 (170)
T ss_dssp             HHHHHHHHHH----HHTC---CCTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHTGGG------S
T ss_pred             CHhHHHHHHH----HcCC---CCCCCEEEEECCcHHHHHHHHHhcccce--EEEeccchHHHHHHHHHHHhhc------c
Confidence            4666666654    4443   4455789999999999999999999885  7999999998887544433321      1


Q ss_pred             eEEEcCCc-cccCCCCEEEEecC
Q 018760           93 KILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        93 ~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      .+...... .....+|+||.|..
T Consensus        66 ~~~~~~~~~~~~~~~dliIN~Tp   88 (170)
T d1nyta1          66 SIQALSMDELEGHEFDLIINATS   88 (170)
T ss_dssp             SEEECCSGGGTTCCCSEEEECCS
T ss_pred             cccccccccccccccceeecccc
Confidence            23322221 23568999999854

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=7.5e-06  Score=68.48  Aligned_cols=94  Identities=11%  Similarity=0.147  Sum_probs=62.7

Q ss_pred             CccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh-h-cCC
Q 018760           13 GGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA-A-FLP   90 (350)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~-~-~~~   90 (350)
                      ||+||.+.+.    ....   ..+..+|+|+|+|.++.++++.|...+. .+|++++++.++++... .+.+.. . +..
T Consensus         1 D~~Gf~~~l~----~~~~---~l~~k~vlIlGaGGaarai~~al~~~g~-~~i~i~nR~~~~~~~~~-~l~~~~~~~~~~   71 (182)
T d1vi2a1           1 DGTGHIRAIK----ESGF---DIKGKTMVLLGAGGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKAL-AFAQRVNENTDC   71 (182)
T ss_dssp             HHHHHHHHHH----HTTC---CCTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEECSSTTHHHHH-HHHHHHHHHSSC
T ss_pred             CHHHHHHHHH----HcCC---CcCCCEEEEECCcHHHHHHHHHHhhcCC-ceEeeeccchHHHHHHH-HHHHHHHhhcCc
Confidence            5777777765    4444   3455799999999999999999999885 69999999988776533 332221 1 111


Q ss_pred             CceEEEcCCc----cccCCCCEEEEecCC
Q 018760           91 RTKILASVDY----AVTAGSDLCIVTAGA  115 (350)
Q Consensus        91 ~~~v~~t~~~----~al~~aDiVIi~~g~  115 (350)
                      ...+....+.    +.+.++|+||.+...
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~diiIN~Tp~  100 (182)
T d1vi2a1          72 VVTVTDLADQQAFAEALASADILTNGTKV  100 (182)
T ss_dssp             EEEEEETTCHHHHHHHHHTCSEEEECSST
T ss_pred             ceEeeecccccchhhhhcccceeccccCC
Confidence            1222222222    346899999999643

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.03  E-value=4.2e-06  Score=69.58  Aligned_cols=39  Identities=23%  Similarity=0.428  Sum_probs=35.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHH
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRG   77 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~   77 (350)
                      .|||+|||.|.||.+++..|+.+++  +|..||+++++.+.
T Consensus         1 ~MkIGvIGlG~MG~~ma~~L~~~G~--~V~~~dr~~~~~~~   39 (178)
T d1pgja2           1 SMDVGVVGLGVMGANLALNIAEKGF--KVAVFNRTYSKSEE   39 (178)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC--CEEEECSSHHHHHH
T ss_pred             CCEEEEEeehHHHHHHHHHHHHCCC--eEEEEECCHHHHHH
Confidence            4899999999999999999999996  99999999987764

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.00  E-value=3.5e-06  Score=70.26  Aligned_cols=93  Identities=11%  Similarity=0.152  Sum_probs=64.9

Q ss_pred             CccchhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCc
Q 018760           13 GGLDLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRT   92 (350)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~   92 (350)
                      ||.||.+.|-    +...   ..+..+|.|+|+|.++.++++.|...+   +|.+++++.++++..+.++..........
T Consensus         1 D~~G~~~~l~----~~~~---~~~~k~vlIlGaGG~arai~~aL~~~~---~i~I~nR~~~ka~~l~~~~~~~~~~~~~~   70 (177)
T d1nvta1           1 DGIGARMALE----EEIG---RVKDKNIVIYGAGGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAEKLNKKFGE   70 (177)
T ss_dssp             HHHHHHHHHH----HHHC---CCCSCEEEEECCSHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHHHHTCCHHH
T ss_pred             CHHHHHHHHH----HhCC---CcCCCEEEEECCcHHHHHHHHHHcccc---ceeeehhhhhHHHHHHHHHHHhhchhhhh
Confidence            4566666655    5454   356679999999999999998886544   99999999999988787777654211111


Q ss_pred             eEEEcCCc-cccCCCCEEEEecCCC
Q 018760           93 KILASVDY-AVTAGSDLCIVTAGAR  116 (350)
Q Consensus        93 ~v~~t~~~-~al~~aDiVIi~~g~~  116 (350)
                      .+.. .+. ..+.++|++|.+...+
T Consensus        71 ~~~~-~~~~~~~~~~dliIn~tp~g   94 (177)
T d1nvta1          71 EVKF-SGLDVDLDGVDIIINATPIG   94 (177)
T ss_dssp             HEEE-ECTTCCCTTCCEEEECSCTT
T ss_pred             hhhh-hhhhhccchhhhhccCCccc
Confidence            2332 244 4578999999986543

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.99  E-value=2.2e-05  Score=63.47  Aligned_cols=64  Identities=11%  Similarity=0.129  Sum_probs=47.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEec
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTA  113 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~  113 (350)
                      |||+|||.|.||+.++..|++.++  ++..+|++.++...   ......      .+.. +-.+.+++||+||++.
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~--~v~~~~~~~~~~~~---~~~~~~------~~~~-~~~e~~~~~diIi~~v   64 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGV--EVVTSLEGRSPSTI---ERARTV------GVTE-TSEEDVYSCPVVISAV   64 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTC--EEEECCTTCCHHHH---HHHHHH------TCEE-CCHHHHHTSSEEEECS
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCC--eEEEEcCchhHHHH---Hhhhcc------cccc-cHHHHHhhcCeEEEEe
Confidence            799999999999999999999996  89999987765432   122221      1221 2236789999999996

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.98  E-value=4.7e-06  Score=65.92  Aligned_cols=96  Identities=16%  Similarity=0.239  Sum_probs=62.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-c-ccCCCCEEE
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-A-VTAGSDLCI  110 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~-al~~aDiVI  110 (350)
                      |||.|+|+|.+|+.++..|...|.  +|+++|.|+++++.    +....    ...+...  ++   . + .+++||.++
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~--~v~vid~d~~~~~~----~~~~~----~~~vi~Gd~~~~~~l~~~~i~~a~~vv   70 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGH--DIVLIDIDKDICKK----ASAEI----DALVINGDCTKIKTLEDAGIEDADMYI   70 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHH----HHHHC----SSEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC--CcceecCChhhhhh----hhhhh----hhhhccCcccchhhhhhcChhhhhhhc
Confidence            799999999999999999999985  99999999987763    32221    1233321  22   1 2 378999999


Q ss_pred             EecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc
Q 018760          111 VTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD  158 (350)
Q Consensus       111 i~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~  158 (350)
                      .+....           ..|+.+    +...+.++++-++..+.+|..
T Consensus        71 ~~t~~d-----------~~N~~~----~~~~k~~~~~~iI~~~~~~~~  103 (132)
T d1lssa_          71 AVTGKE-----------EVNLMS----SLLAKSYGINKTIARISEIEY  103 (132)
T ss_dssp             ECCSCH-----------HHHHHH----HHHHHHTTCCCEEEECSSTTH
T ss_pred             ccCCcH-----------HHHHHH----HHHHHHcCCceEEEEecCHHH
Confidence            874321           124322    223344666666655566643

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.95  E-value=3.9e-05  Score=61.78  Aligned_cols=57  Identities=19%  Similarity=0.350  Sum_probs=45.0

Q ss_pred             CCCCCCeEEEEc-CChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEE
Q 018760           33 PTKRHTKISVIG-TGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIV  111 (350)
Q Consensus        33 ~~~~~~KI~IIG-AG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi  111 (350)
                      ++..++||+||| +|.||..++..|.+.|+  +|.++|++++...                       .+.+.++|++++
T Consensus         5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~--~V~~~d~~~~~~~-----------------------~~~~~~~~~v~~   59 (152)
T d2pv7a2           5 INSDIHKIVIVGGYGKLGGLFARYLRASGY--PISILDREDWAVA-----------------------ESILANADVVIV   59 (152)
T ss_dssp             SCTTCCCEEEETTTSHHHHHHHHHHHTTTC--CEEEECTTCGGGH-----------------------HHHHTTCSEEEE
T ss_pred             cCCCCCeEEEEcCCCHHHHHHHHHHHHcCC--CcEeccccccccc-----------------------chhhhhcccccc
Confidence            455667999999 79999999999999997  9999999875332                       123567888888


Q ss_pred             ecC
Q 018760          112 TAG  114 (350)
Q Consensus       112 ~~g  114 (350)
                      +..
T Consensus        60 ~~~   62 (152)
T d2pv7a2          60 SVP   62 (152)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            853

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.88  E-value=1.6e-05  Score=66.04  Aligned_cols=68  Identities=16%  Similarity=0.237  Sum_probs=49.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcC---Cc-cccCCCCEEEEec
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV---DY-AVTAGSDLCIVTA  113 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~---~~-~al~~aDiVIi~~  113 (350)
                      .+|+|||.|.||.++|..|+..++  +|+.+|+++++++.    +......  ........   +. +.+.++|.++++.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~--~V~v~dr~~~~~~~----l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~ii~~~   74 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGF--VVCAFNRTVSKVDD----FLANEAK--GTKVLGAHSLEEMVSKLKKPRRIILLV   74 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC--CEEEECSSTHHHHH----HHHTTTT--TSSCEECSSHHHHHHHBCSSCEEEECS
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCC--eEEEEcCCHHHHHH----HHHhccc--cccccchhhhhhhhhhhcccceEEEec
Confidence            379999999999999999999996  99999999987763    4332211  11111111   22 5688999999985

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.78  E-value=5.1e-05  Score=61.96  Aligned_cols=107  Identities=14%  Similarity=0.231  Sum_probs=69.5

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      .+..||.|||+|.||..++..|...+. .++.++.++.++++.....+.        .++....+. +.+.++|+||.+.
T Consensus        22 l~~~~ilviGaG~~g~~v~~~L~~~g~-~~i~v~nRt~~ka~~l~~~~~--------~~~~~~~~~~~~l~~~Divi~at   92 (159)
T d1gpja2          22 LHDKTVLVVGAGEMGKTVAKSLVDRGV-RAVLVANRTYERAVELARDLG--------GEAVRFDELVDHLARSDVVVSAT   92 (159)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCC-SEEEEECSSHHHHHHHHHHHT--------CEECCGGGHHHHHHTCSEEEECC
T ss_pred             cccCeEEEECCCHHHHHHHHHHHhcCC-cEEEEEcCcHHHHHHHHHhhh--------cccccchhHHHHhccCCEEEEec
Confidence            455699999999999999999999885 589999999887764433321        222222344 5789999999997


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchH
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDIL  160 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~  160 (350)
                      +.+. +-.+        .+.++...+ .++....-++|-++.|-|+-
T Consensus        93 ss~~-~ii~--------~~~i~~~~~-~r~~~~~~~iiDlavPr~vd  129 (159)
T d1gpja2          93 AAPH-PVIH--------VDDVREALR-KRDRRSPILIIDIANPRDVE  129 (159)
T ss_dssp             SSSS-CCBC--------HHHHHHHHH-HCSSCCCEEEEECCSSCSBC
T ss_pred             CCCC-cccc--------HhhhHHHHH-hcccCCCeEEEeecCCCCcC
Confidence            7553 1111        122222111 11123345788889997774

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.64  E-value=8.5e-05  Score=60.97  Aligned_cols=80  Identities=15%  Similarity=0.212  Sum_probs=54.7

Q ss_pred             hhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC
Q 018760           20 TFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD   99 (350)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~   99 (350)
                      ||.+.+++...   . +..||.|+|+|.++.++++.|.+.+. .+|.+++++.++.+.    +.+...    ....   +
T Consensus         4 G~~~~l~~~~~---~-~~~~vlIlGaGGaarai~~aL~~~g~-~~I~I~nR~~~ka~~----L~~~~~----~~~~---~   67 (167)
T d1npya1           4 AIVKLIEKYHL---N-KNAKVIVHGSGGMAKAVVAAFKNSGF-EKLKIYARNVKTGQY----LAALYG----YAYI---N   67 (167)
T ss_dssp             HHHHHHHHTTC---C-TTSCEEEECSSTTHHHHHHHHHHTTC-CCEEEECSCHHHHHH----HHHHHT----CEEE---S
T ss_pred             HHHHHHHHcCC---C-CCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEecccHHHHHH----HHHhhh----hhhh---h
Confidence            45555545543   2 34689999999999999999999886 689999999987764    333221    1111   1


Q ss_pred             ccccCCCCEEEEecCC
Q 018760          100 YAVTAGSDLCIVTAGA  115 (350)
Q Consensus       100 ~~al~~aDiVIi~~g~  115 (350)
                      .....++|+||.|...
T Consensus        68 ~~~~~~~DliINaTpi   83 (167)
T d1npya1          68 SLENQQADILVNVTSI   83 (167)
T ss_dssp             CCTTCCCSEEEECSST
T ss_pred             cccccchhhheecccc
Confidence            1224679999998543

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.63  E-value=3.4e-05  Score=63.45  Aligned_cols=47  Identities=21%  Similarity=0.446  Sum_probs=41.4

Q ss_pred             CeEEEE-cCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh
Q 018760           38 TKISVI-GTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA   86 (350)
Q Consensus        38 ~KI~II-GAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~   86 (350)
                      |||+|| |+|.+|+++|..|+..|.  +|++.++++++++....++....
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~--~V~l~~R~~e~~~~l~~~i~~~~   48 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREEKAEAKAAEYRRIA   48 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC
Confidence            799999 669999999999999996  99999999999987777776543

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=97.52  E-value=1.4e-05  Score=64.49  Aligned_cols=88  Identities=14%  Similarity=0.116  Sum_probs=51.7

Q ss_pred             EEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCCcCc
Q 018760           40 ISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGARQIA  119 (350)
Q Consensus        40 I~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~~~~  119 (350)
                      |.+||+|+||++++..|...+.  .+.++++++++++.    +.+...     .. ..+..++++.+|+||+++.    +
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~--~~~v~~R~~~~~~~----l~~~~~-----~~-~~~~~~~~~~~DiVil~v~----d   65 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYE--IGYILSRSIDRARN----LAEVYG-----GK-AATLEKHPELNGVVFVIVP----D   65 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC------CCCEECSSHHHHHH----HHHHTC-----CC-CCSSCCCCC---CEEECSC----T
T ss_pred             EEEEeCcHHHHHHHHHHHhCCC--EEEEEeCChhhhcc----hhhccc-----cc-ccchhhhhccCcEEEEecc----c
Confidence            6899999999999987765442  34579999887764    443321     11 1234477899999999963    1


Q ss_pred             cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc
Q 018760          120 GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV  157 (350)
Q Consensus       120 g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~  157 (350)
                      .            .+.+++..+.  .++.+++-.+++.
T Consensus        66 ~------------~i~~v~~~l~--~~~~ivi~~s~~~   89 (153)
T d2i76a2          66 R------------YIKTVANHLN--LGDAVLVHCSGFL   89 (153)
T ss_dssp             T------------THHHHHTTTC--CSSCCEEECCSSS
T ss_pred             h------------hhhHHHhhhc--ccceeeeecccch
Confidence            1            1234455553  3566666666543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.52  E-value=6.7e-05  Score=61.48  Aligned_cols=77  Identities=21%  Similarity=0.259  Sum_probs=55.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC--c-cccCCCCEEE
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD--Y-AVTAGSDLCI  110 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~--~-~al~~aDiVI  110 (350)
                      ..++-||+|||+|.+|..-+.....-|-  +|..+|.++++++.    ++....  ........+.  . +.+++||+||
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~A~~lGA--~V~~~D~~~~~l~~----l~~~~~--~~~~~~~~~~~~l~~~~~~aDivI  100 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKMAVGLGA--QVQIFDINVERLSY----LETLFG--SRVELLYSNSAEIETAVAEADLLI  100 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHH----HHHHHG--GGSEEEECCHHHHHHHHHTCSEEE
T ss_pred             CCCCcEEEEECCChHHHHHHHHHhhCCC--EEEEEeCcHHHHHH----HHHhhc--ccceeehhhhhhHHHhhccCcEEE
Confidence            5678899999999999998888888784  99999999988874    333221  1223322222  2 5799999999


Q ss_pred             EecCCCcC
Q 018760          111 VTAGARQI  118 (350)
Q Consensus       111 i~~g~~~~  118 (350)
                      -++-.|.+
T Consensus       101 ~aalipG~  108 (168)
T d1pjca1         101 GAVLVPGR  108 (168)
T ss_dssp             ECCCCTTS
T ss_pred             EeeecCCc
Confidence            99876543

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=0.00024  Score=57.03  Aligned_cols=93  Identities=13%  Similarity=0.130  Sum_probs=56.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcC--CCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEec
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQD--FVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTA  113 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~--~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~  113 (350)
                      |.||+|+|| |.||+-+...|++++  ...+++++..+...-..    +....   ....+....+.++++++|++|++.
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~----~~~~~---~~~~~~~~~~~~~~~~~DivF~a~   73 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA----PSFGG---TTGTLQDAFDLEALKALDIIVTCQ   73 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBC----CGGGT---CCCBCEETTCHHHHHTCSEEEECS
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccc----ccccC---CceeeecccchhhhhcCcEEEEec
Confidence            358999999 999999998777764  34688888765432110    11110   122222233456789999999996


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEE
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLI  152 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv  152 (350)
                      +                ..+-+++++.+.+...+.+||-
T Consensus        74 ~----------------~~~s~~~~~~~~~~g~~~~VID   96 (146)
T d1t4ba1          74 G----------------GDYTNEIYPKLRESGWQGYWID   96 (146)
T ss_dssp             C----------------HHHHHHHHHHHHHTTCCCEEEE
T ss_pred             C----------------chHHHHhhHHHHhcCCCeeccc
Confidence            3                2344555566655544444433

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.00035  Score=58.63  Aligned_cols=93  Identities=17%  Similarity=0.293  Sum_probs=61.1

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcC--C---c-cccCCCCEE
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV--D---Y-AVTAGSDLC  109 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~--~---~-~al~~aDiV  109 (350)
                      ++||+|+|| |.+|++++..|+..|.  +|++++++++++...    .     ....++...+  |   . ++++++|+|
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~--~V~~~~R~~~~~~~~----~-----~~~~~~~~gD~~d~~~l~~al~~~d~v   71 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRLPSE----G-----PRPAHVVVGDVLQAADVDKTVAGQDAV   71 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGGSCSS----S-----CCCSEEEESCTTSHHHHHHHHTTCSEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEEcChhhcccc----c-----ccccccccccccchhhHHHHhcCCCEE
Confidence            469999998 9999999999999985  999999998876421    1     1233444321  2   2 468999999


Q ss_pred             EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC
Q 018760          110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS  145 (350)
Q Consensus       110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~  145 (350)
                      |.++|..........     +....+.+.+.+++..
T Consensus        72 i~~~g~~~~~~~~~~-----~~~~~~~l~~aa~~~~  102 (205)
T d1hdoa_          72 IVLLGTRNDLSPTTV-----MSEGARNIVAAMKAHG  102 (205)
T ss_dssp             EECCCCTTCCSCCCH-----HHHHHHHHHHHHHHHT
T ss_pred             EEEeccCCchhhhhh-----hHHHHHHHHHHHHhcC
Confidence            999875422111111     2234445566666654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.41  E-value=8.6e-05  Score=62.18  Aligned_cols=78  Identities=19%  Similarity=0.221  Sum_probs=57.2

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC---c-cccCCCCEE
Q 018760           35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD---Y-AVTAGSDLC  109 (350)
Q Consensus        35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~---~-~al~~aDiV  109 (350)
                      .+.++|.|+|| |.+|..++..|++.|.  +|+++|+++++++.....+...... ...... .++   . +.+.++|+|
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~d-~~~~~~~~~~~~~iDil   96 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKV-NVTAAE-TADDASRAEAVKGAHFV   96 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTC-CCEEEE-CCSHHHHHHHTTTCSEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhcc--chhhcccchHHHHHHHHHHHhccch-hhhhhh-cccHHHHHHHhcCcCee
Confidence            34568999998 9999999999999995  9999999999988766666543311 111122 123   2 458899999


Q ss_pred             EEecCCC
Q 018760          110 IVTAGAR  116 (350)
Q Consensus       110 Ii~~g~~  116 (350)
                      |.++|.+
T Consensus        97 in~Ag~g  103 (191)
T d1luaa1          97 FTAGAIG  103 (191)
T ss_dssp             EECCCTT
T ss_pred             eecCccc
Confidence            9998754

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.39  E-value=0.00024  Score=55.54  Aligned_cols=66  Identities=23%  Similarity=0.355  Sum_probs=47.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-c-ccCCCCEEE
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-A-VTAGSDLCI  110 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~-al~~aDiVI  110 (350)
                      +|++|+|+|.+|+.++..|.+.|.  +++++|.|+++++.    +.+..     ..+...  ++   . + .+.+||.||
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~--~vvvid~d~~~~~~----~~~~~-----~~~~~gd~~~~~~l~~a~i~~a~~vi   69 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGH--EVLAVDINEEKVNA----YASYA-----THAVIANATEENELLSLGIRNFEYVI   69 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC--CCEEEESCHHHHHH----TTTTC-----SEEEECCTTCTTHHHHHTGGGCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC--eEEEecCcHHHHHH----HHHhC-----CcceeeecccchhhhccCCccccEEE
Confidence            378999999999999999999996  89999999987763    32211     122221  12   1 2 378999988


Q ss_pred             EecC
Q 018760          111 VTAG  114 (350)
Q Consensus       111 i~~g  114 (350)
                      ++.+
T Consensus        70 ~~~~   73 (134)
T d2hmva1          70 VAIG   73 (134)
T ss_dssp             ECCC
T ss_pred             EEcC
Confidence            8853

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=0.00055  Score=61.72  Aligned_cols=111  Identities=14%  Similarity=0.229  Sum_probs=71.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----ccC--CCCE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VTA--GSDL  108 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al~--~aDi  108 (350)
                      |||.|+|| |.+|+.++..|++.+.  +|+++|+.....+.....+.+...  ....+...  +|.+    .++  ++|+
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~l~~~~~~~~~d~   76 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLGG--KHPTFVEGDIRNEALMTEILHDHAIDT   76 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHHT--SCCEEEECCTTCHHHHHHHHHHTTCSE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHhhcC--CCCEEEEeecCCHHHHHHHHhccCCCE
Confidence            79999999 9999999999999985  999999743222222223333221  12333322  1322    344  7899


Q ss_pred             EEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEE
Q 018760          109 CIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLI  152 (350)
Q Consensus       109 VIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv  152 (350)
                      ||-+|+....+  -+...+.+..|+.-.+.+.+.++++....+|..
T Consensus        77 ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~  122 (338)
T d1udca_          77 VIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFS  122 (338)
T ss_dssp             EEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             EEECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEec
Confidence            99987643211  123456677899988999999988866554433

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=6.4e-05  Score=64.70  Aligned_cols=102  Identities=13%  Similarity=0.204  Sum_probs=68.1

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc-----CCc-cccCCCCEE
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS-----VDY-AVTAGSDLC  109 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t-----~~~-~al~~aDiV  109 (350)
                      ++||.|+|| |.+|+.++..|++++.+.+|+++++++.......  ..       .......     .++ ++++++|+|
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~--~~-------~i~~~~~D~~~~~~~~~~~~~~d~v   84 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA--YK-------NVNQEVVDFEKLDDYASAFQGHDVG   84 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG--GG-------GCEEEECCGGGGGGGGGGGSSCSEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccc--cc-------eeeeeeecccccccccccccccccc
Confidence            458999999 9999999999999997779999999765433100  00       1122211     123 568999999


Q ss_pred             EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCe
Q 018760          110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDC  148 (350)
Q Consensus       110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a  148 (350)
                      +.+++... ......++...|......+++...+...+.
T Consensus        85 i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~  122 (232)
T d2bkaa1          85 FCCLGTTR-GKAGAEGFVRVDRDYVLKSAELAKAGGCKH  122 (232)
T ss_dssp             EECCCCCH-HHHHHHHHHHHHTHHHHHHHHHHHHTTCCE
T ss_pred             cccccccc-cccchhhhhhhcccccceeeecccccCccc
Confidence            99987542 122334445567777777888777765444

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.23  E-value=0.00016  Score=58.85  Aligned_cols=68  Identities=15%  Similarity=0.206  Sum_probs=48.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcC--C---c-cccCCCCEEE
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV--D---Y-AVTAGSDLCI  110 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~--~---~-~al~~aDiVI  110 (350)
                      .+||.|||||.||.++|..|.+.|.  +|+++|++.++++.    +.....   ...+....  +   . +.+..+|+++
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~--~V~v~dr~~~~a~~----l~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~i   72 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI--KVTVACRTLESAKK----LSAGVQ---HSTPISLDVNDDAALDAEVAKHDLVI   72 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC--EEEEEESCHHHHHH----HHTTCT---TEEEEECCTTCHHHHHHHHTTSSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC--EEEEEECChHHHHH----HHhccc---ccccccccccchhhhHhhhhccceeE
Confidence            3589999999999999999999986  99999999987764    333221   11122111  1   2 3477888888


Q ss_pred             Eec
Q 018760          111 VTA  113 (350)
Q Consensus       111 i~~  113 (350)
                      .+.
T Consensus        73 ~~~   75 (182)
T d1e5qa1          73 SLI   75 (182)
T ss_dssp             ECS
T ss_pred             eec
Confidence            764

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.22  E-value=0.00065  Score=54.61  Aligned_cols=61  Identities=16%  Similarity=0.164  Sum_probs=42.3

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEec
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTA  113 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~  113 (350)
                      ||++||.|.||.++|..|+..+.   ++.++++.++...    +.....    . .  ....+.+.++|++|++.
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~---~~~~~~~~~~~~~----~~~~~~----~-~--~~~~~~~~~~~~~i~~~   62 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFP---TLVWNRTFEKALR----HQEEFG----S-E--AVPLERVAEARVIFTCL   62 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSC---EEEECSSTHHHHH----HHHHHC----C-E--ECCGGGGGGCSEEEECC
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCC---EEEEeCCHHHHHH----HHHHcC----C-c--ccccccccceeEEEecc
Confidence            89999999999999999998773   4567776655432    222221    1 1  12356778899999885

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00045  Score=59.93  Aligned_cols=151  Identities=11%  Similarity=0.117  Sum_probs=87.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC----ccccCCCCEEE
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD----YAVTAGSDLCI  110 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~----~~al~~aDiVI  110 (350)
                      +.+++.|+|| +.+|.++|..|++.|.  +|++.|+++++++....++.....+.  .++.-..+    .+.+..-|++|
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~~~~~~~~~--~Dv~d~~~v~~~~~~~g~iDilV   81 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECPGIEPVC--VDLGDWEATERALGSVGPVDLLV   81 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCEEEE--CCTTCHHHHHHHHTTCCCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCCCeEEE--EeCCCHHHHHHHHHHhCCceEEE
Confidence            3457888898 8999999999999996  99999999988775544443211110  01100000    13467889999


Q ss_pred             EecCCCcC-c--cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEcCCc------chHHHHHHHHhCCCCCc
Q 018760          111 VTAGARQI-A--GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVANPV------DILTYVAWKLSGLPSNR  174 (350)
Q Consensus       111 i~~g~~~~-~--g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNP~------~~~~~~~~~~sg~~~~r  174 (350)
                      ..+|.... +  ..+..+   .+.-|    ....+.+++.+.+....+.+|+++--.      ....|.+.|.       
T Consensus        82 nnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~~~~~Y~asKa-------  154 (244)
T d1pr9a_          82 NNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKG-------  154 (244)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHHHH-------
T ss_pred             eccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccccccchhhhhhhHH-------
Confidence            99876432 1  112221   22223    445666777665555567777775322      2234444443       


Q ss_pred             EeeecCCccHHHHHHHHHHHcCCCCcceEEEEE
Q 018760          175 VIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIV  207 (350)
Q Consensus       175 viG~g~~ld~~r~~~~la~~l~v~p~~v~~~v~  207 (350)
                        ++      ..+-+.+|..+  .|..|++-.+
T Consensus       155 --al------~~lt~~lA~el--~~~gIrvN~I  177 (244)
T d1pr9a_         155 --AL------DMLTKVMALEL--GPHKIRVNAV  177 (244)
T ss_dssp             --HH------HHHHHHHHHHH--GGGTEEEEEE
T ss_pred             --HH------HHHHHHHHHHh--CCCcEEEEEE
Confidence              11      23455667666  4566776555

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.16  E-value=0.0028  Score=55.03  Aligned_cols=148  Identities=16%  Similarity=0.203  Sum_probs=90.0

Q ss_pred             CeEE-EEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------cc
Q 018760           38 TKIS-VIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------AV  102 (350)
Q Consensus        38 ~KI~-IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~a  102 (350)
                      +||+ |.|| +.+|..+|..|++.|.  +|++.|+++++++....++.+...   .......  ++.           +.
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~g~---~~~~~~~Dv~~~~~v~~~~~~~~~~   75 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAGG---HAVAVKVDVSDRDQVFAAVEQARKT   75 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC---CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC---cEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            4774 5588 7899999999999996  899999999999877777765321   2221111  111           22


Q ss_pred             cCCCCEEEEecCCCcC-c--cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEcCCc------chHHHHHHH
Q 018760          103 TAGSDLCIVTAGARQI-A--GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVANPV------DILTYVAWK  166 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~-~--g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNP~------~~~~~~~~~  166 (350)
                      +..-|++|..+|.... +  ..+..+   .+.-|    ....+...+.+.+....+.+++++-..      +...|.+.|
T Consensus        76 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asK  155 (255)
T d1gega_          76 LGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSK  155 (255)
T ss_dssp             TTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTBHHHHHHH
T ss_pred             hCCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcccCcccccchhCH
Confidence            4678999999886432 1  122211   22223    455666777777777778777776332      223444444


Q ss_pred             HhCCCCCcEeeecCCccHHHHHHHHHHHcCCCCcceEEEEE
Q 018760          167 LSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIV  207 (350)
Q Consensus       167 ~sg~~~~rviG~g~~ld~~r~~~~la~~l~v~p~~v~~~v~  207 (350)
                      .         |+      ..+-+.+|..+  .|..|++-.+
T Consensus       156 a---------al------~~ltk~lA~el--~~~gIrVN~I  179 (255)
T d1gega_         156 F---------AV------RGLTQTAARDL--APLGITVNGY  179 (255)
T ss_dssp             H---------HH------HHHHHHHHHHH--GGGTEEEEEE
T ss_pred             H---------HH------HhhHHHHHHHh--hhhCcEEEEE
Confidence            3         12      23445566665  3556766554

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.14  E-value=0.00054  Score=59.37  Aligned_cols=148  Identities=12%  Similarity=0.132  Sum_probs=86.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC-------ccccCCCC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD-------YAVTAGSD  107 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~-------~~al~~aD  107 (350)
                      +.+++.|+|| +.+|..++..|++.|.  +|++.|+++++++....++.....+.  .++   +|       .+.+..-|
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~~~~--~Dv---~~~~~v~~~~~~~g~iD   76 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKECPGIEPVC--VDL---GDWDATEKALGGIGPVD   76 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCEEEE--CCT---TCHHHHHHHHTTCCCCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCCeEEE--EeC---CCHHHHHHHHHHcCCCe
Confidence            3457888898 8999999999999995  99999999887765444433211110  011   11       13356789


Q ss_pred             EEEEecCCCcC-c--cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEcCCc------chHHHHHHHHhCCC
Q 018760          108 LCIVTAGARQI-A--GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVANPV------DILTYVAWKLSGLP  171 (350)
Q Consensus       108 iVIi~~g~~~~-~--g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNP~------~~~~~~~~~~sg~~  171 (350)
                      ++|..+|.... +  ..+..+   .+.-|    ..+.+...+.+.+....+.+|+++-..      +...|.+.|..   
T Consensus        77 ilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~asKaa---  153 (242)
T d1cyda_          77 LLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGA---  153 (242)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHHHHH---
T ss_pred             EEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccCCccccccchHHH---
Confidence            99999886432 1  112221   12222    445566677665555566677775332      22344444431   


Q ss_pred             CCcEeeecCCccHHHHHHHHHHHcCCCCcceEEEEE
Q 018760          172 SNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIV  207 (350)
Q Consensus       172 ~~rviG~g~~ld~~r~~~~la~~l~v~p~~v~~~v~  207 (350)
                            +      ..+-+.+|..+  .|..|++-.+
T Consensus       154 ------l------~~lt~~lA~e~--~~~gIrvN~I  175 (242)
T d1cyda_         154 ------M------TMLTKAMAMEL--GPHKIRVNSV  175 (242)
T ss_dssp             ------H------HHHHHHHHHHH--GGGTEEEEEE
T ss_pred             ------H------HHHHHHHHHHh--CccCeecccC
Confidence                  1      23445566665  4566766555

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.07  E-value=0.0043  Score=54.68  Aligned_cols=132  Identities=15%  Similarity=0.193  Sum_probs=76.8

Q ss_pred             hhccccCCCCCCCCCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--
Q 018760           21 FFKPINHAAPPSPTKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--   97 (350)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--   97 (350)
                      |+.+.++.+-++..-+.+.+.|.|| |.+|.++|..|+..|.  +|++.|+++++++..+.++.....  ........  
T Consensus         9 ~~~~~~~~~~~~~~l~gK~alITGas~GIG~aiA~~la~~Ga--~Vii~~r~~~~l~~~~~~l~~~~g--~~~~~~~~D~   84 (294)
T d1w6ua_           9 FFSPLQKAMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQTG--NKVHAIQCDV   84 (294)
T ss_dssp             HSCCCCSCCSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCT
T ss_pred             hcCcccccCCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhcC--CceEEEEecc
Confidence            4444444443333344466777787 8999999999999995  999999999988877777765432  11222211  


Q ss_pred             CCcc-----------ccCCCCEEEEecCCCcCcc---cc---HHHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760           98 VDYA-----------VTAGSDLCIVTAGARQIAG---ES---RLNLLQRN----LSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus        98 ~~~~-----------al~~aDiVIi~~g~~~~~g---~~---r~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      ++.+           .....|++|.++|......   .+   ....+..|    .......+..+......+.+++.+..
T Consensus        85 ~~~~~v~~~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~  164 (294)
T d1w6ua_          85 RDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTI  164 (294)
T ss_dssp             TCHHHHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCT
T ss_pred             cChHHHHHHhhhhhhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccc
Confidence            1111           2357899999987543211   11   11112222    22334445555555555656665543

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=97.07  E-value=0.0074  Score=54.06  Aligned_cols=107  Identities=14%  Similarity=0.110  Sum_probs=68.0

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC------c-cccCC
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD------Y-AVTAG  105 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~------~-~al~~  105 (350)
                      ..+..||.|+|| |.+|+.++..|++.|.  +|+...++.++.+.... +.+.. ...........|      . +++.+
T Consensus         8 ~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~--~V~~~vR~~~~~~~~~~-~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~   83 (342)
T d1y1pa1           8 LPEGSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQK-RWDAK-YPGRFETAVVEDMLKQGAYDEVIKG   83 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH-HHHHH-STTTEEEEECSCTTSTTTTTTTTTT
T ss_pred             CCCcCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCchhHHHHHH-hhhcc-ccccccEEEeccccchhhhhhhccc
Confidence            344579999999 9999999999999985  88888887765543221 21111 111111111122      2 46899


Q ss_pred             CCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccC
Q 018760          106 SDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYS  145 (350)
Q Consensus       106 aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~  145 (350)
                      +|.|+..+.... ...+.......|+.-...+.+.+.+..
T Consensus        84 ~~~v~~~a~~~~-~~~~~~~~~~~nv~gt~~ll~~~~~~~  122 (342)
T d1y1pa1          84 AAGVAHIASVVS-FSNKYDEVVTPAIGGTLNALRAAAATP  122 (342)
T ss_dssp             CSEEEECCCCCS-CCSCHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             chhhhhhccccc-ccccccccccchhhhHHHHHHhhhccc
Confidence            999998865432 233444555567777778888777763

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.06  E-value=0.00032  Score=56.29  Aligned_cols=92  Identities=15%  Similarity=0.142  Sum_probs=55.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcC--CCCeEEEEeCCccchHHHHHHHHHHhhcC-CCceEEEcCCccccCCCCEEEEec
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQD--FVEELALVDAKADKLRGEMLDLQHAAAFL-PRTKILASVDYAVTAGSDLCIVTA  113 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~--~~~ev~L~D~~~~~l~~~~~dl~~~~~~~-~~~~v~~t~~~~al~~aDiVIi~~  113 (350)
                      |||+|||| |.+|+-+...|+...  ...++.++..+..  .+..      ..+. ....+....+.+.++++|+|+.|.
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~--~gk~------~~~~~~~~~~~~~~~~~~~~~~DvvF~al   72 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQI--GVPA------PNFGKDAGMLHDAFDIESLKQLDAVITCQ   72 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCC--SSBC------CCSSSCCCBCEETTCHHHHTTCSEEEECS
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccc--cccc------cccCCcceeeecccchhhhccccEEEEec
Confidence            79999999 999999998777643  2347777765432  1110      1111 122232233456789999999996


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEE
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV  153 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~  153 (350)
                      +                -.+-+++++.+.+.+.+.+||-.
T Consensus        73 p----------------~~~s~~~~~~l~~~g~~~~VIDl   96 (147)
T d1mb4a1          73 G----------------GSYTEKVYPALRQAGWKGYWIDA   96 (147)
T ss_dssp             C----------------HHHHHHHHHHHHHTTCCSEEEES
T ss_pred             C----------------chHHHHHhHHHHHcCCceEEEeC
Confidence            3                13345566666666665554433

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.00086  Score=49.07  Aligned_cols=72  Identities=14%  Similarity=0.171  Sum_probs=50.5

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC-ccccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD-YAVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~-~~al~~aDiVIi~~g  114 (350)
                      +..||+|+|+|..|.++|..|.+.+.  +|.++|.++.....  ..+.      ....+..... .+.+.++|+||++.|
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~--~v~~~D~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~~~d~vi~SPG   73 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGV--TPRVMDTRMTPPGL--DKLP------EAVERHTGSLNDEWLMAADLIVASPG   73 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC--CCEEEESSSSCTTG--GGSC------TTSCEEESBCCHHHHHHCSEEEECTT
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC--EEEEeeCCcCchhH--HHHh------hccceeecccchhhhccCCEEEECCC
Confidence            45689999999999999999999985  89999986542210  0111      1223333332 345889999999988


Q ss_pred             CCc
Q 018760          115 ARQ  117 (350)
Q Consensus       115 ~~~  117 (350)
                      .|.
T Consensus        74 i~~   76 (93)
T d2jfga1          74 IAL   76 (93)
T ss_dssp             SCT
T ss_pred             CCC
Confidence            774

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.0016  Score=57.95  Aligned_cols=107  Identities=15%  Similarity=0.162  Sum_probs=69.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCC-ccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAK-ADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~-~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      +||.|+|| |.+|+.++..|++.+.  +|+.+|.. ..+.+.    +.....+ ...++.-.... ..+.++|+||-+|+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~----~~~~~~~-~~~d~~~~~~~~~~~~~~d~VihlAa   74 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFTGRKRN----VEHWIGH-ENFELINHDVVEPLYIEVDQIYHLAS   74 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCGGG----TGGGTTC-TTEEEEECCTTSCCCCCCSEEEECCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCCcCCHHH----HHHhcCC-CceEEEehHHHHHHHcCCCEEEECcc
Confidence            59999999 9999999999999985  89999963 222221    2221111 13344432223 35679999998876


Q ss_pred             CCcC--ccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEE
Q 018760          115 ARQI--AGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV  153 (350)
Q Consensus       115 ~~~~--~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~  153 (350)
                      ....  ......+.+..|+.....+.+.+++...  .+|.+
T Consensus        75 ~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~--k~I~~  113 (312)
T d2b69a1          75 PASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLA  113 (312)
T ss_dssp             CCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEE
T ss_pred             cCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEE
Confidence            4321  1123455677788888899888887654  34444

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.99  E-value=0.0012  Score=54.43  Aligned_cols=42  Identities=19%  Similarity=0.213  Sum_probs=35.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHH
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRG   77 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~   77 (350)
                      +.++-||.|||||.+|..-+.....-|-  .|..+|+++++++.
T Consensus        26 ~V~pa~VvViGaGvaG~~Aa~~A~~lGA--~V~v~D~~~~~~~~   67 (183)
T d1l7da1          26 TVPPARVLVFGVGVAGLQAIATAKRLGA--VVMATDVRAATKEQ   67 (183)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCSTTHHH
T ss_pred             CcCCcEEEEEcCcHHHHHHHHHHHHcCC--EEEEEeccHHHHHH
Confidence            4567899999999999998877777774  99999999988873

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=96.96  E-value=0.0035  Score=51.93  Aligned_cols=118  Identities=12%  Similarity=0.109  Sum_probs=72.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      .....+|+|+|+|.+|..++..+..-+.  +|..+|.....-.     ..+..      .+....+. +.+++||+|+++
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~--~v~~~d~~~~~~~-----~~~~~------~~~~~~~l~~~l~~sD~v~~~  107 (188)
T d2naca1          41 DLEAMHVGTVAAGRIGLAVLRRLAPFDV--HLHYTDRHRLPES-----VEKEL------NLTWHATREDMYPVCDVVTLN  107 (188)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTC--EEEEECSSCCCHH-----HHHHH------TCEECSSHHHHGGGCSEEEEC
T ss_pred             eccccceeeccccccchhhhhhhhccCc--eEEEEeecccccc-----ccccc------cccccCCHHHHHHhccchhhc
Confidence            3456799999999999999999887775  8999998653221     11111      12223354 568999999998


Q ss_pred             cCCCc-CccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecC
Q 018760          113 AGARQ-IAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGT  180 (350)
Q Consensus       113 ~g~~~-~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~  180 (350)
                      ..... ..+.-       |.       +.+....+++++||++-..=+-...+.+.  +..+++.|.+.
T Consensus       108 ~plt~~T~~li-------~~-------~~l~~mk~ga~lIN~aRG~ivd~~aL~~a--L~~g~i~ga~l  160 (188)
T d2naca1         108 CPLHPETEHMI-------ND-------ETLKLFKRGAYIVNTARGKLCDRDAVARA--LESGRLAGYAG  160 (188)
T ss_dssp             SCCCTTTTTCB-------SH-------HHHTTSCTTEEEEECSCGGGBCHHHHHHH--HHTTSEEEEEE
T ss_pred             ccccccchhhh-------HH-------HHHHhCCCCCEEEecCchhhhhHHHHHHH--HhCCCceeEEE
Confidence            64321 11211       11       22333468899999986554444444443  33457766543

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.0034  Score=51.68  Aligned_cols=81  Identities=16%  Similarity=0.281  Sum_probs=53.0

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccc---hH------------HHHHHHHHHhhcCCCceEEEc
Q 018760           33 PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADK---LR------------GEMLDLQHAAAFLPRTKILAS   97 (350)
Q Consensus        33 ~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~---l~------------~~~~dl~~~~~~~~~~~v~~t   97 (350)
                      ...++.||+|||||..|.+.|..|+++|+  +|+|+|.+++-   +.            .....+.+.... ...++...
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~--~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~-~gV~i~l~  115 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGH--QVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEV-TGVTLKLN  115 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTC--EEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHH-HTCEEEES
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhcc--ceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhc-CCeEEEeC
Confidence            34556799999999999999999999996  99999986521   10            011111111110 13455543


Q ss_pred             CC--ccccCCCCEEEEecCCC
Q 018760           98 VD--YAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        98 ~~--~~al~~aDiVIi~~g~~  116 (350)
                      ++  .+...+.|.||++.|..
T Consensus       116 ~~Vt~~~~~~~d~vilAtG~~  136 (179)
T d1ps9a3         116 HTVTADQLQAFDETILASGIP  136 (179)
T ss_dssp             CCCCSSSSCCSSEEEECCCEE
T ss_pred             CEEcccccccceeEEEeecCC
Confidence            33  24578899999998753

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.95  E-value=0.0079  Score=51.95  Aligned_cols=113  Identities=12%  Similarity=0.147  Sum_probs=71.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------c
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------A  101 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~  101 (350)
                      +.+.+.|.|| +.+|.++|..|++.|.  +|++.|+++++++....++.+...  ........  ++.           +
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKE   79 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            3456778898 8999999999999996  999999999988877777765432  12222211  111           2


Q ss_pred             ccCCCCEEEEecCCCcC-c--cccHHH---HHH----hhHHHHHHHHhhhhccCCCeEEEEE
Q 018760          102 VTAGSDLCIVTAGARQI-A--GESRLN---LLQ----RNLSLFKAIIPPLVKYSPDCILLIV  153 (350)
Q Consensus       102 al~~aDiVIi~~g~~~~-~--g~~r~~---~~~----~n~~i~~~i~~~i~~~~p~a~viv~  153 (350)
                      .+..-|++|..+|.... +  ..+..+   .+.    ......+.+.+.|.+..... +|++
T Consensus        80 ~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~-Ii~i  140 (251)
T d1vl8a_          80 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPS-IINI  140 (251)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCE-EEEE
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccccccc-cccc
Confidence            23578999999886432 2  112222   122    23567777788887655434 4444

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.95  E-value=0.0046  Score=53.62  Aligned_cols=112  Identities=16%  Similarity=0.208  Sum_probs=71.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------c
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------A  101 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~  101 (350)
                      +.+++.|.|| +.+|.++|..|++.|.  +|++.|+++++++....++...      ......  ++.           +
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~------~~~~~~Dvt~~~~v~~~~~~~~~   75 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGA--RVAIADINLEAARATAAEIGPA------ACAIALDVTDQASIDRCVAELLD   75 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTE--EEEEEESCHHHHHHHHHHHCTT------EEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCc------eEEEEeeCCCHHHHHHHHHHHHH
Confidence            3446777798 8999999999999995  9999999998887665555321      111111  121           1


Q ss_pred             ccCCCCEEEEecCCCc-Cc--cccHH---HHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          102 VTAGSDLCIVTAGARQ-IA--GESRL---NLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       102 al~~aDiVIi~~g~~~-~~--g~~r~---~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      .+..-|++|..+|... .+  ..+..   ..+.-|    ..+.+.+++.+.+....+.||+++-
T Consensus        76 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS  139 (256)
T d1k2wa_          76 RWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMAS  139 (256)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             HhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccc
Confidence            2357899999988643 11  11222   223333    4556667777766665677777753

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.92  E-value=0.0012  Score=55.14  Aligned_cols=117  Identities=17%  Similarity=0.131  Sum_probs=70.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      +...++|+|||.|++|+.++..+..-|.  +|..+|.....-.      ....      .+....+. +.++.||+|+++
T Consensus        46 eL~gktvgIiG~G~IG~~va~~l~~fg~--~v~~~d~~~~~~~------~~~~------~~~~~~~l~~ll~~sD~i~~~  111 (193)
T d1mx3a1          46 RIRGETLGIIGLGRVGQAVALRAKAFGF--NVLFYDPYLSDGV------ERAL------GLQRVSTLQDLLFHSDCVTLH  111 (193)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC--EEEEECTTSCTTH------HHHH------TCEECSSHHHHHHHCSEEEEC
T ss_pred             eeeCceEEEeccccccccceeeeecccc--ceeeccCcccccc------hhhh------ccccccchhhccccCCEEEEe
Confidence            4556799999999999999999887775  9999998654321      1111      12223455 458999999998


Q ss_pred             cCCC-cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecC
Q 018760          113 AGAR-QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGT  180 (350)
Q Consensus       113 ~g~~-~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~  180 (350)
                      .... ...+.-       |.       +.+....|++++||++-.-=+-...+.+.  +..+++.|.+.
T Consensus       112 ~plt~~T~~li-------~~-------~~l~~mk~~a~lIN~sRG~ivde~aL~~a--L~~~~i~~a~l  164 (193)
T d1mx3a1         112 CGLNEHNHHLI-------ND-------FTVKQMRQGAFLVNTARGGLVDEKALAQA--LKEGRIRGAAL  164 (193)
T ss_dssp             CCCCTTCTTSB-------SH-------HHHTTSCTTEEEEECSCTTSBCHHHHHHH--HHHTSEEEEEE
T ss_pred             ecccccchhhh-------hH-------HHHhccCCCCeEEecCCceEEcHHHHHHH--HHcCCceEEEE
Confidence            6432 111211       11       12334468999999985433333333332  12236655543

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=96.91  E-value=0.0011  Score=60.34  Aligned_cols=75  Identities=16%  Similarity=0.161  Sum_probs=56.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ....++|||+|..+..-+..+...-.+.+|.++|+++++.+..+.++...    ....+..+.+. +++++||+|+.+..
T Consensus       127 da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~----~g~~v~~~~s~~eav~~ADIi~t~Ta  202 (340)
T d1x7da_         127 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEY----SGLTIRRASSVAEAVKGVDIITTVTA  202 (340)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTC----TTCEEEECSSHHHHHTTCSEEEECCC
T ss_pred             CCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhc----cCCCceecCCHHHHHhcCCceeeccc
Confidence            34589999999988887776655433689999999998877665555431    24577777776 68999999998653

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=96.90  E-value=0.0039  Score=53.97  Aligned_cols=113  Identities=11%  Similarity=0.085  Sum_probs=72.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------ccc
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------AVT  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~al  103 (350)
                      +.+.|.|| +.+|..++..|++.|.  +|++.|+++++++....++...    ........  +|.           +.+
T Consensus         7 K~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP----DQIQFFQHDSSDEDGWTKLFDATEKAF   80 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT----TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCC----CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35556688 8999999999999996  8999999998887655555321    12222211  111           223


Q ss_pred             CCCCEEEEecCCCcC-c--cccHHH---HHH----hhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          104 AGSDLCIVTAGARQI-A--GESRLN---LLQ----RNLSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~-~--g~~r~~---~~~----~n~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      ..-|++|..+|.... +  ..+..+   .+.    ......+...+.|.+....+.||+++-.
T Consensus        81 G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~  143 (251)
T d1zk4a1          81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI  143 (251)
T ss_dssp             SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCG
T ss_pred             CCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeecc
Confidence            568999999876432 1  122222   222    2355677888888887766777877643

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.0098  Score=51.48  Aligned_cols=114  Identities=15%  Similarity=0.258  Sum_probs=73.9

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEE--c--CCc-----------
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA--S--VDY-----------  100 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~--t--~~~-----------  100 (350)
                      .+.+.|+|| +.+|..+|..|++.|.  +|++.|+++++++..+.++.....   ..++..  .  ++.           
T Consensus        10 ~Kv~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~---~~~~~~~~~Dls~~~~v~~~v~~~~   84 (257)
T d1xg5a_          10 DRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGY---PGTLIPYRCDLSNEEDILSMFSAIR   84 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC---SSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC---CceEEEEEccCCCHHHHHHHHHHHH
Confidence            345777798 8999999999999996  899999999999887777776431   112221  1  111           


Q ss_pred             cccCCCCEEEEecCCCcC-c--cccH---HHHHHhh----HHHHHHHHhhhhccC-CCeEEEEEcC
Q 018760          101 AVTAGSDLCIVTAGARQI-A--GESR---LNLLQRN----LSLFKAIIPPLVKYS-PDCILLIVAN  155 (350)
Q Consensus       101 ~al~~aDiVIi~~g~~~~-~--g~~r---~~~~~~n----~~i~~~i~~~i~~~~-p~a~viv~tN  155 (350)
                      +.+..-|++|..+|.... +  ..+.   ...+..|    .-..+.+++.+.+.. ..+.||+++-
T Consensus        85 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS  150 (257)
T d1xg5a_          85 SQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININS  150 (257)
T ss_dssp             HHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECC
T ss_pred             HhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEec
Confidence            224578999999876431 1  1121   1112222    556677788777654 4677777753

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.0072  Score=52.04  Aligned_cols=116  Identities=14%  Similarity=0.171  Sum_probs=74.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------ccc
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------AVT  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~al  103 (350)
                      ..+.|.|| +.+|..+|..|++.|.  +|++.|+++++++..+.++....   .......+  +|.           +.+
T Consensus         8 kv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~~---~~~~~~~~Dvs~~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           8 EIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG---AKVHTFVVDCSNREDIYSSAKKVKAEI   82 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            35666698 7899999999999996  99999999999987777776422   12222222  121           234


Q ss_pred             CCCCEEEEecCCCcCcc--ccHH----HHHH----hhHHHHHHHHhhhhccCCCeEEEEEcCCcch
Q 018760          104 AGSDLCIVTAGARQIAG--ESRL----NLLQ----RNLSLFKAIIPPLVKYSPDCILLIVANPVDI  159 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~g--~~r~----~~~~----~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~  159 (350)
                      ...|++|.++|......  ....    +.+.    ......+.+.+.|.+.. .+.||+++-....
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~G~Iv~isS~~~~  147 (244)
T d1yb1a_          83 GDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN-HGHIVTVASAAGH  147 (244)
T ss_dssp             CCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCC-C
T ss_pred             CCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcC-CceEEEeecchhc
Confidence            57899999988653221  1111    2222    23556777788887654 5777777655443

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.80  E-value=0.00075  Score=57.35  Aligned_cols=38  Identities=13%  Similarity=0.409  Sum_probs=33.5

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           33 PTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        33 ~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      |++...||+|||||-+|.+.|+.|.+++.  +|+|+|.+.
T Consensus         2 ~~~~~~kVvVIGaGiaGl~~A~~L~~~G~--~V~vier~~   39 (268)
T d1c0pa1           2 MMHSQKRVVVLGSGVIGLSSALILARKGY--SVHILARDL   39 (268)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CCCCCCcEEEECccHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            45666799999999999999999999996  999999753

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.79  E-value=0.0069  Score=54.53  Aligned_cols=104  Identities=15%  Similarity=0.068  Sum_probs=66.5

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccCCC
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAGS  106 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~a  106 (350)
                      +.+.|||.|+|| |.+|+.++..|++++.  +|+.+|+....-.      ....   ...++...  .+.    +.++++
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~------~~~~---~~~~~~~~D~~~~~~~~~~~~~~   80 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHM------TEDM---FCDEFHLVDLRVMENCLKVTEGV   80 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSS------CGGG---TCSEEEECCTTSHHHHHHHHTTC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCCccch------hhhc---ccCcEEEeechhHHHHHHHhhcC
Confidence            346799999998 9999999999999985  9999997543210      0000   11222221  121    357899


Q ss_pred             CEEEEecCCCcCc---cccHHHHHHhhHHHHHHHHhhhhccCCCe
Q 018760          107 DLCIVTAGARQIA---GESRLNLLQRNLSLFKAIIPPLVKYSPDC  148 (350)
Q Consensus       107 DiVIi~~g~~~~~---g~~r~~~~~~n~~i~~~i~~~i~~~~p~a  148 (350)
                      |.||.+++.....   ..........|......+.....+.+-.-
T Consensus        81 d~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~  125 (363)
T d2c5aa1          81 DHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKR  125 (363)
T ss_dssp             SEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred             CeEeecccccccccccccccccccccccchhhHHHHhHHhhCccc
Confidence            9999987543221   12334445667777777888877765443

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.0059  Score=49.19  Aligned_cols=95  Identities=17%  Similarity=0.155  Sum_probs=59.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc----cccCCCCEEEE
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY----AVTAGSDLCIV  111 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~----~al~~aDiVIi  111 (350)
                      +..+|.|+|+|.+|...+..+...|.  +++.+|.++++++ .+..+-      .. .+..+.+.    ...++.|+||.
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga--~~i~~~~~~~~~~-~a~~lG------ad-~~i~~~~~~~~~~~~~~~D~vid   99 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGA--HVVAFTTSEAKRE-AAKALG------AD-EVVNSRNADEMAAHLKSFDFILN   99 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESSGGGHH-HHHHHT------CS-EEEETTCHHHHHTTTTCEEEEEE
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccc--cchhhccchhHHH-HHhccC------Cc-EEEECchhhHHHHhcCCCceeee
Confidence            44689999999999998888877775  6778999888765 222221      11 22223231    24578999999


Q ss_pred             ecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc
Q 018760          112 TAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD  158 (350)
Q Consensus       112 ~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~  158 (350)
                      ++|.+..            .      -..+.-..|.+.++.++.|.+
T Consensus       100 ~~g~~~~------------~------~~~~~~l~~~G~iv~~G~~~~  128 (168)
T d1uufa2         100 TVAAPHN------------L------DDFTTLLKRDGTMTLVGAPAT  128 (168)
T ss_dssp             CCSSCCC------------H------HHHHTTEEEEEEEEECCCC--
T ss_pred             eeecchh------------H------HHHHHHHhcCCEEEEeccCCC
Confidence            9875420            0      111223367888888876554

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=96.75  E-value=0.0011  Score=54.02  Aligned_cols=64  Identities=17%  Similarity=0.356  Sum_probs=45.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEecC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      ++||+|||+|.+|+..+..+.+.+-+.-+.++|+++++..              ...+....+. +...+.|+|+++.+
T Consensus         3 kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~--------------~~~~~~~~~~~~~~~~~D~Vvi~tp   67 (170)
T d1f06a1           3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT--------------KTPVFDVADVDKHADDVDVLFLCMG   67 (170)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS--------------SSCEEEGGGGGGTTTTCSEEEECSC
T ss_pred             cceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccccc--------------ccccccchhhhhhccccceEEEeCC
Confidence            5899999999999999888887654444557788765432              1234445555 45789999999864

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.75  E-value=0.00096  Score=55.25  Aligned_cols=111  Identities=10%  Similarity=0.135  Sum_probs=67.8

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      ...++|+|||.|.+|..++..+..-|.  +|..+|+++...               ..+.  ..+. +.+++||+|+++.
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~g~--~v~~~d~~~~~~---------------~~~~--~~~l~ell~~sDiv~~~~  100 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAALGA--QVRGFSRTPKEG---------------PWRF--TNSLEEALREARAAVCAL  100 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTC--EEEEECSSCCCS---------------SSCC--BSCSHHHHTTCSEEEECC
T ss_pred             ccCceEEEeccccccccceeeeecccc--cccccccccccc---------------ceee--eechhhhhhccchhhccc
Confidence            345789999999999999999888886  999999875321               0111  2345 5699999999986


Q ss_pred             CCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeec
Q 018760          114 GARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSG  179 (350)
Q Consensus       114 g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g  179 (350)
                      ...  + +++ .++  |       .+.+....|++++|+++-.-=+-...+.+.  +..+++.|.+
T Consensus       101 pl~--~-~t~-~li--~-------~~~l~~mk~~ailIN~~RG~ivd~~aL~~a--L~~~~i~~aa  151 (181)
T d1qp8a1         101 PLN--K-HTR-GLV--K-------YQHLALMAEDAVFVNVGRAEVLDRDGVLRI--LKERPQFIFA  151 (181)
T ss_dssp             CCS--T-TTT-TCB--C-------HHHHTTSCTTCEEEECSCGGGBCHHHHHHH--HHHCTTCEEE
T ss_pred             ccc--c-ccc-ccc--c-------cceeeeccccceEEeccccccccchhhhhh--cccCcEEEEE
Confidence            321  1 111 000  1       123344468999999984432333333333  1223555553

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.72  E-value=0.0016  Score=53.56  Aligned_cols=70  Identities=17%  Similarity=0.280  Sum_probs=46.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEE-EEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-c--CCCCEEEEe
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELA-LVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-T--AGSDLCIVT  112 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~-L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l--~~aDiVIi~  112 (350)
                      ++||+|||+|.+|...+..|...+-+ +|+ ++|+++++++.    +.....+....++  .+|+++ +  .+.|+|+++
T Consensus         1 kiki~iIG~G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~~----~~~~~~~~~~~~~--~~~~~~ll~~~~iD~v~I~   73 (184)
T d1ydwa1           1 QIRIGVMGCADIARKVSRAIHLAPNA-TISGVASRSLEKAKA----FATANNYPESTKI--HGSYESLLEDPEIDALYVP   73 (184)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHHCTTE-EEEEEECSSHHHHHH----HHHHTTCCTTCEE--ESSHHHHHHCTTCCEEEEC
T ss_pred             CeEEEEEcCCHHHHHHHHHHHhCCCC-EEEEEEeCCcccccc----chhccccccceee--cCcHHHhhhccccceeeec
Confidence            37999999999999998888776533 554 78999887653    3332222223344  356643 3  578999998


Q ss_pred             c
Q 018760          113 A  113 (350)
Q Consensus       113 ~  113 (350)
                      .
T Consensus        74 t   74 (184)
T d1ydwa1          74 L   74 (184)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.0091  Score=47.22  Aligned_cols=99  Identities=7%  Similarity=0.084  Sum_probs=62.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c--cccCCCCEEE
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y--AVTAGSDLCI  110 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~--~al~~aDiVI  110 (350)
                      ..|.|+|.|.+|..++..|...+.  +++++|.++++......++..     ....+...  ++   +  ..+..||.||
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~--~v~vId~d~~~~~~~~~~~~~-----~~~~vi~Gd~~d~~~L~~a~i~~a~~vi   76 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLG-----DNADVIPGDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHC-----TTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCC--CEEEEeccchhHHHHHHHhhc-----CCcEEEEccCcchHHHHHhccccCCEEE
Confidence            479999999999999999999885  899999998765433333321     12334322  12   2  2478999999


Q ss_pred             EecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc-CCcc
Q 018760          111 VTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA-NPVD  158 (350)
Q Consensus       111 i~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t-NP~~  158 (350)
                      ++.+..           ..|+.+    +..+++.+|+..++..+ +|..
T Consensus        77 ~~~~~d-----------~~n~~~----~~~~r~~~~~~~iia~~~~~~~  110 (153)
T d1id1a_          77 ALSDND-----------ADNAFV----VLSAKDMSSDVKTVLAVSDSKN  110 (153)
T ss_dssp             ECSSCH-----------HHHHHH----HHHHHHHTSSSCEEEECSSGGG
T ss_pred             EccccH-----------HHHHHH----HHHHHHhCCCCceEEEEcCHHH
Confidence            985321           123333    33445567776555554 5543

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=96.66  E-value=0.0025  Score=53.12  Aligned_cols=118  Identities=13%  Similarity=0.111  Sum_probs=71.1

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      .+..+|.|||.|.+|+.++..+..-+.  ++..+|........    ....       ......+. +.++.||+|+++.
T Consensus        45 l~g~tvgIiG~G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~----~~~~-------~~~~~~~l~~ll~~sD~v~l~~  111 (191)
T d1gdha1          45 LDNKTLGIYGFGSIGQALAKRAQGFDM--DIDYFDTHRASSSD----EASY-------QATFHDSLDSLLSVSQFFSLNA  111 (191)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC--EEEEECSSCCCHHH----HHHH-------TCEECSSHHHHHHHCSEEEECC
T ss_pred             ecccceEEeecccchHHHHHHHHhhcc--ccccccccccccch----hhcc-------cccccCCHHHHHhhCCeEEecC
Confidence            345799999999999999988887775  89999987653331    1111       11112345 5699999999986


Q ss_pred             CC-CcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCC
Q 018760          114 GA-RQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTN  181 (350)
Q Consensus       114 g~-~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~  181 (350)
                      .. +...+.-       |.       +.+....|++++||++-.-=+-...+.+.  +..+++.|.+..
T Consensus       112 plt~~T~~li-------~~-------~~l~~mk~~a~lIN~sRG~ivde~aL~~a--L~~g~i~~a~lD  164 (191)
T d1gdha1         112 PSTPETRYFF-------NK-------ATIKSLPQGAIVVNTARGDLVDNELVVAA--LEAGRLAYAGFD  164 (191)
T ss_dssp             CCCTTTTTCB-------SH-------HHHTTSCTTEEEEECSCGGGBCHHHHHHH--HHHTSEEEEEES
T ss_pred             CCCchHhhee-------cH-------HHhhCcCCccEEEecCCccchhhHHHHHH--HHcCCceEEEEE
Confidence            43 2111211       11       22334468999999985443333333332  223477666443

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0079  Score=48.50  Aligned_cols=39  Identities=23%  Similarity=0.350  Sum_probs=33.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      .-+|+|+|+|.+|...+..+...|. ..|+.+|++++|++
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~-~~Vi~~d~~~~rl~   65 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGA-AQVVVTDLSATRLS   65 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHH
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCC-ceEEeccCCHHHHH
Confidence            3589999999999998888887774 58999999998876

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=96.61  E-value=0.0032  Score=53.50  Aligned_cols=74  Identities=15%  Similarity=0.200  Sum_probs=47.5

Q ss_pred             CCCCCeEEEEcCChhHHH-HHHHHHhcCCCCeEE-EEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-c--CCCCE
Q 018760           34 TKRHTKISVIGTGNVGMA-IAQTILTQDFVEELA-LVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-T--AGSDL  108 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~-~a~~l~~~~~~~ev~-L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l--~~aDi  108 (350)
                      ..++.||+|||+|.+|.. ++..+...+-+ +|+ ++|+++++++..    ...... ...++...+|+++ +  .+.|+
T Consensus        30 ~~~~iriaiIG~G~~~~~~~~~~~~~~~~~-~ivav~d~~~~~a~~~----~~~~~i-~~~~~~~~~d~~ell~~~~iD~  103 (221)
T d1h6da1          30 EDRRFGYAIVGLGKYALNQILPGFAGCQHS-RIEALVSGNAEKAKIV----AAEYGV-DPRKIYDYSNFDKIAKDPKIDA  103 (221)
T ss_dssp             CCCCEEEEEECCSHHHHHTHHHHTTTCSSE-EEEEEECSCHHHHHHH----HHHTTC-CGGGEECSSSGGGGGGCTTCCE
T ss_pred             CCCCEEEEEEcCcHHHHHHHHHHHHhCCCc-eEEEEecCCHHHHHHH----HHhhcc-ccccccccCchhhhccccccee
Confidence            446789999999999974 55555554433 544 899999887643    222211 2234555567754 4  36899


Q ss_pred             EEEec
Q 018760          109 CIVTA  113 (350)
Q Consensus       109 VIi~~  113 (350)
                      |+++.
T Consensus       104 V~I~t  108 (221)
T d1h6da1         104 VYIIL  108 (221)
T ss_dssp             EEECS
T ss_pred             eeecc
Confidence            99985

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.60  E-value=0.006  Score=49.08  Aligned_cols=39  Identities=18%  Similarity=0.231  Sum_probs=33.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      +..+|.|+|+|.+|...+..+...|.  +|+.+|.+++|++
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga--~vi~v~~~~~r~~   64 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGA--FVVCTARSPRRLE   64 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHH
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcc--cccccchHHHHHH
Confidence            34589999999999999888888884  8999999998876

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=96.59  E-value=0.003  Score=52.94  Aligned_cols=114  Identities=20%  Similarity=0.184  Sum_probs=70.8

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      ...++|+|||.|++|+.++..+..-|.  +|+.+|.......            ....+.   .+. +.++.||+|+++.
T Consensus        43 l~~ktvgIiG~G~IG~~va~~l~~fg~--~v~~~d~~~~~~~------------~~~~~~---~~l~~l~~~~D~v~~~~  105 (199)
T d1dxya1          43 LGQQTVGVMGTGHIGQVAIKLFKGFGA--KVIAYDPYPMKGD------------HPDFDY---VSLEDLFKQSDVIDLHV  105 (199)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCCSSC------------CTTCEE---CCHHHHHHHCSEEEECC
T ss_pred             ccceeeeeeecccccccccccccccce--eeeccCCccchhh------------hcchhH---HHHHHHHHhcccceeee
Confidence            345799999999999999999987776  9999998654211            011121   245 4579999999986


Q ss_pred             CCC-cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCC
Q 018760          114 GAR-QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTN  181 (350)
Q Consensus       114 g~~-~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~  181 (350)
                      ... ...+.-       |.       +.+....+++++||++-..=+-...+.+.  +..+++.|.+..
T Consensus       106 plt~~T~~li-------~~-------~~l~~mk~~a~lIN~aRG~vvde~aL~~a--L~~g~i~ga~lD  158 (199)
T d1dxya1         106 PGIEQNTHII-------NE-------AAFNLMKPGAIVINTARPNLIDTQAMLSN--LKSGKLAGVGID  158 (199)
T ss_dssp             CCCGGGTTSB-------CH-------HHHHHSCTTEEEEECSCTTSBCHHHHHHH--HHTTSEEEEEES
T ss_pred             cccccccccc-------cH-------HHhhccCCceEEEecccHhhhhhHHHHHH--HhcCCcceEecc
Confidence            432 111111       22       22233468899999986543434444433  234577666443

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.59  E-value=0.0067  Score=49.99  Aligned_cols=116  Identities=18%  Similarity=0.192  Sum_probs=71.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      ....++|.|+|.|.+|+.++..+..-+.  +|..+|........     ...     ..+.   .+. +.++.||+|+++
T Consensus        41 ~l~~k~vgiiG~G~IG~~va~~~~~fg~--~v~~~d~~~~~~~~-----~~~-----~~~~---~~l~ell~~sDiv~~~  105 (184)
T d1ygya1          41 EIFGKTVGVVGLGRIGQLVAQRIAAFGA--YVVAYDPYVSPARA-----AQL-----GIEL---LSLDDLLARADFISVH  105 (184)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC--EEEEECTTSCHHHH-----HHH-----TCEE---CCHHHHHHHCSEEEEC
T ss_pred             cccceeeeeccccchhHHHHHHhhhccc--eEEeecCCCChhHH-----hhc-----Ccee---ccHHHHHhhCCEEEEc
Confidence            4456799999999999999988876664  99999987643221     111     1122   244 568999999998


Q ss_pred             cCCC-cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecC
Q 018760          113 AGAR-QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGT  180 (350)
Q Consensus       113 ~g~~-~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~  180 (350)
                      .... ...+.-       |.       +.+....|++++||++--.-+-...+.+.  +..+++.|.+.
T Consensus       106 ~Plt~~T~~li-------n~-------~~l~~mk~~a~lIN~sRG~iVde~aL~~a--L~~~~i~~a~l  158 (184)
T d1ygya1         106 LPKTPETAGLI-------DK-------EALAKTKPGVIIVNAARGGLVDEAALADA--ITGGHVRAAGL  158 (184)
T ss_dssp             CCCSTTTTTCB-------CH-------HHHTTSCTTEEEEECSCTTSBCHHHHHHH--HHTSSEEEEEE
T ss_pred             CCCCchhhhhh-------hH-------HHHhhhCCCceEEEecchhhhhhHHHHHH--HhcCcEeEEEE
Confidence            6422 111211       21       22333468999999986544444444443  23457766643

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=96.58  E-value=0.0021  Score=51.85  Aligned_cols=67  Identities=12%  Similarity=0.072  Sum_probs=44.6

Q ss_pred             CCeEEEEcCChhHHH-HHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-ccCCCCEEEEec
Q 018760           37 HTKISVIGTGNVGMA-IAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-VTAGSDLCIVTA  113 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~-~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-al~~aDiVIi~~  113 (350)
                      ++||+|||+|.+|.. .+..+...+-+.-+.++|.++++++...    ....    ..  ..++++ .+++.|+|+++.
T Consensus         1 Kiri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~----~~~~----~~--~~~~~~~l~~~~D~V~I~t   69 (164)
T d1tlta1           1 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPIC----ESWR----IP--YADSLSSLAASCDAVFVHS   69 (164)
T ss_dssp             CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHH----HHHT----CC--BCSSHHHHHTTCSEEEECS
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhh----hccc----cc--ccccchhhhhhcccccccc
Confidence            479999999999976 5666665543334568999998776432    2211    11  234554 368999999985

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.57  E-value=0.0037  Score=54.84  Aligned_cols=114  Identities=13%  Similarity=0.198  Sum_probs=70.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------ccc
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------AVT  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~al  103 (350)
                      +.+.|.|| +.+|.++|..|++.|.  +|++.|+++++++..+.++...............  ++.           +.+
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF   82 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            45667788 8999999999999996  9999999999998777777654211011122211  111           123


Q ss_pred             CCCCEEEEecCCCcCc-----cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEc
Q 018760          104 AGSDLCIVTAGARQIA-----GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~-----g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ..-|++|..+|.....     .++..+   .+.-|    ....+.+.+.|.+ .+.+.+++.|
T Consensus        83 G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~-~~~g~ii~~s  144 (274)
T d1xhla_          83 GKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIK-TKGEIVNVSS  144 (274)
T ss_dssp             SCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTCEEEEECC
T ss_pred             CCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccc-cccccccchh
Confidence            4679999998753221     112221   12223    4466677777765 3456666654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.57  E-value=0.012  Score=43.04  Aligned_cols=74  Identities=22%  Similarity=0.365  Sum_probs=53.7

Q ss_pred             CCCCCeEEEEcCChhH-HHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVG-MAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG-~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~  112 (350)
                      +.+.+||-+||.|.+| +++|..|...|.  +|.-.|.....   ....+.+.     ..++....+.+.++++|+||.+
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~--~VsGSD~~~~~---~~~~L~~~-----Gi~v~~g~~~~~i~~~d~vV~S   74 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGY--QISGSDIADGV---VTQRLAQA-----GAKIYIGHAEEHIEGASVVVVS   74 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTC--EEEEEESCCSH---HHHHHHHT-----TCEEEESCCGGGGTTCSEEEEC
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCC--EEEEEeCCCCh---hhhHHHHC-----CCeEEECCccccCCCCCEEEEC
Confidence            4566799999998888 456899999997  99999997532   22344432     3456654445678999999999


Q ss_pred             cCCCc
Q 018760          113 AGARQ  117 (350)
Q Consensus       113 ~g~~~  117 (350)
                      .+.+.
T Consensus        75 ~AI~~   79 (96)
T d1p3da1          75 SAIKD   79 (96)
T ss_dssp             TTSCT
T ss_pred             CCcCC
Confidence            77664

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.011  Score=51.14  Aligned_cols=113  Identities=16%  Similarity=0.189  Sum_probs=71.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------c
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------A  101 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~  101 (350)
                      +.+++.|.|| +.+|.++|..|++.|.  +|++.|+++++++....++....   ........  ++.           +
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~l~~~g---~~~~~~~~Dvs~~~~~~~~~~~~~~   84 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG---GQAFACRCDITSEQELSALADFAIS   84 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC---CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            3446667788 8999999999999995  99999999998887777776532   12222211  111           2


Q ss_pred             ccCCCCEEEEecCCCcC-c-cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEc
Q 018760          102 VTAGSDLCIVTAGARQI-A-GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       102 al~~aDiVIi~~g~~~~-~-g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      .+..-|++|..+|.... + ..+..+   .+.-|    ....+.+++.+.+.. .+.+|+++
T Consensus        85 ~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Ii~is  145 (255)
T d1fmca_          85 KLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTIT  145 (255)
T ss_dssp             HHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             HcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccc-cccccccc
Confidence            23578999999886432 1 222222   12223    446667777777755 44555654

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.0037  Score=51.77  Aligned_cols=113  Identities=12%  Similarity=0.131  Sum_probs=70.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      .....+|+|||.|.+|..++..+..-+.  +|..+|.......              ..... ..+. +.++.||+|+++
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~--~v~~~d~~~~~~~--------------~~~~~-~~~l~ell~~sDii~i~  103 (188)
T d1sc6a1          41 EARGKKLGIIGYGHIGTQLGILAESLGM--YVYFYDIENKLPL--------------GNATQ-VQHLSDLLNMSDVVSLH  103 (188)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCCCCC--------------TTCEE-CSCHHHHHHHCSEEEEC
T ss_pred             cccceEEEEeecccchhhhhhhcccccc--eEeeccccccchh--------------hhhhh-hhhHHHHHhhccceeec
Confidence            4566799999999999999998887775  9999998653221              00111 2345 568999999998


Q ss_pred             cCCCc-CccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeec
Q 018760          113 AGARQ-IAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSG  179 (350)
Q Consensus       113 ~g~~~-~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g  179 (350)
                      ..... ..+.-       |.+       .+....+++++||++-.-=+-...+.+.  +..+++.|.+
T Consensus       104 ~plt~~T~~li-------~~~-------~l~~mk~~a~lIN~aRG~lvde~aL~~a--L~~~~~~~a~  155 (188)
T d1sc6a1         104 VPENPSTKNMM-------GAK-------EISLMKPGSLLINASRGTVVDIPALADA--LASKHLAGAA  155 (188)
T ss_dssp             CCSSTTTTTCB-------CHH-------HHHHSCTTEEEEECSCSSSBCHHHHHHH--HHTTSEEEEE
T ss_pred             ccCCcchhhhc-------cHH-------HHhhCCCCCEEEEcCcHHhhhhHHHHHH--HHcCCceEEE
Confidence            64321 11221       111       2233478999999985544444444443  2234676663

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=96.49  E-value=0.0067  Score=53.51  Aligned_cols=111  Identities=17%  Similarity=0.274  Sum_probs=68.5

Q ss_pred             eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----cccCC--CCEE
Q 018760           39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAG--SDLC  109 (350)
Q Consensus        39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~--aDiV  109 (350)
                      ||.|+|| |.+|++++..|+++|.  +|+.+|.-..+..  ...+..... ....++...  ++.    +++++  .|+|
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~--~V~~id~~~~~~~--~~~~~~~~~-~~~~~~i~~Di~~~~~l~~~~~~~~~d~V   76 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGA--TDNLHWLSS-LGNFEFVHGDIRNKNDVTRLITKYMPDSC   76 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTH--HHHHHHHHT-TCCCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCcccc--hhHHHHhhc-cCCcEEEEcccCCHHHHHHHHHhcCCceE
Confidence            8999999 9999999999999985  8999985322111  111222211 123344322  122    23443  4999


Q ss_pred             EEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          110 IVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       110 Ii~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |-++......  ..+..+....|+.-.+.+.+...+.+..-.++..|
T Consensus        77 ih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS  123 (338)
T d1orra_          77 FHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS  123 (338)
T ss_dssp             EECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EeecccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence            9987643221  12335566778888888888888876655555554

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.47  E-value=0.018  Score=49.66  Aligned_cols=115  Identities=13%  Similarity=0.153  Sum_probs=72.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------c
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------A  101 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~  101 (350)
                      +.+++.|.|| +.+|.++|..|++.|.  +|++.|+++++++....++.....  ........  ++.           +
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEFG--VKTKAYQCDVSNTDIVTKTIQQIDA   83 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHHT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence            3446777798 7899999999999996  899999999888766666654332  12222211  111           1


Q ss_pred             ccCCCCEEEEecCCCcC-c--cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEc
Q 018760          102 VTAGSDLCIVTAGARQI-A--GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       102 al~~aDiVIi~~g~~~~-~--g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      .+..-|++|..+|.... +  ..+..+   .+.-|    ....+.+.+.+.+....+.+++.+
T Consensus        84 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~  146 (260)
T d1h5qa_          84 DLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTS  146 (260)
T ss_dssp             HSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred             HhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEee
Confidence            23578999999876432 2  122222   22233    456677788877766677666654

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=96.47  E-value=0.0034  Score=56.31  Aligned_cols=112  Identities=8%  Similarity=-0.012  Sum_probs=69.6

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcc----cc--CCCC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT--AGSD  107 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al--~~aD  107 (350)
                      .+||.|+|| |.+|+.++..|++.|.  +|+.+|++............    .....+....  +|++    ++  ...|
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~----~~~~i~~~~~Dl~d~~~l~~~~~~~~~~   81 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETAR----VADGMQSEIGDIRDQNKLLESIREFQPE   81 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTT----TTTTSEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCccHHHHhhhh----cccCCeEEEeeccChHhhhhhhhhchhh
Confidence            479999998 9999999999999996  99999998765543221111    1112333322  1222    22  2458


Q ss_pred             EEEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          108 LCIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       108 iVIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +|+.+++.+...  ...-......|+.-...+.+.+.+......++..|
T Consensus        82 ~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s  130 (356)
T d1rkxa_          82 IVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNIT  130 (356)
T ss_dssp             EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred             hhhhhhccccccccccCCccccccccccchhhhhhhhcccccccccccc
Confidence            888877644211  11224445667788888888888876555444443

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.0094  Score=51.44  Aligned_cols=113  Identities=19%  Similarity=0.133  Sum_probs=70.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------ccc
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------AVT  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~al  103 (350)
                      +.+.|+|| +.+|.++|..|++.|.  +|++.|+++++++....++..... .........  ++.           +.+
T Consensus         4 KvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           4 KVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFE-PQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSC-GGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcC-CCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            45667798 8999999999999995  999999999988866666654321 001111111  121           123


Q ss_pred             CCCCEEEEecCCCcCccccHHHHHH----hhHHHHHHHHhhhhcc--CCCeEEEEEcC
Q 018760          104 AGSDLCIVTAGARQIAGESRLNLLQ----RNLSLFKAIIPPLVKY--SPDCILLIVAN  155 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~g~~r~~~~~----~n~~i~~~i~~~i~~~--~p~a~viv~tN  155 (350)
                      ...|++|..+|......-  .+.+.    ......+...+.|.+.  ...+.||+++-
T Consensus        81 G~iDilVnnAg~~~~~~~--~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS  136 (254)
T d2gdza1          81 GRLDILVNNAGVNNEKNW--EKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSS  136 (254)
T ss_dssp             SCCCEEEECCCCCCSSSH--HHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             CCcCeecccccccccccc--hheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeecc
Confidence            578999999987543221  12222    2344556666777654  23477778763

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.45  E-value=0.018  Score=49.70  Aligned_cols=149  Identities=14%  Similarity=0.108  Sum_probs=86.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------ccc
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------AVT  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~al  103 (350)
                      +.+.|.|| +.+|.+++..|++.|.  +|++.|+++++++....++..... .........  +|.           +.+
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~~-~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAP-DAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCT-TCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhCC-CCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            35667798 7999999999999995  999999999988876666655431 111111111  121           123


Q ss_pred             CCCCEEEEecCCCc--Cc--cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEcCCc------chHHHHHHH
Q 018760          104 AGSDLCIVTAGARQ--IA--GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVANPV------DILTYVAWK  166 (350)
Q Consensus       104 ~~aDiVIi~~g~~~--~~--g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNP~------~~~~~~~~~  166 (350)
                      ..-|++|..+|...  .+  ..+..+   .+.-|    ....+.+.+.|.+.. .+.||+++-..      +...|.+.|
T Consensus        82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Ii~isS~~~~~~~~~~~~Y~asK  160 (258)
T d1iy8a_          82 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTASVGGIRGIGNQSGYAAAK  160 (258)
T ss_dssp             SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTSBCSSBHHHHHHH
T ss_pred             CCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhc-CCCCcccccHhhccCCCCchHHHHHH
Confidence            57899999988532  22  122222   22223    445566667766644 45566665322      223444444


Q ss_pred             HhCCCCCcEeeecCCccHHHHHHHHHHHcCCCCcceEEEEE
Q 018760          167 LSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIV  207 (350)
Q Consensus       167 ~sg~~~~rviG~g~~ld~~r~~~~la~~l~v~p~~v~~~v~  207 (350)
                      .         |+      ..+-+.+|..+  .|..|++-.+
T Consensus       161 a---------al------~~lt~~lA~el--~~~gIrVN~i  184 (258)
T d1iy8a_         161 H---------GV------VGLTRNSAVEY--GRYGIRINAI  184 (258)
T ss_dssp             H---------HH------HHHHHHHHHHH--GGGTCEEEEE
T ss_pred             H---------HH------HHHHHHHHHHh--CccCceEEEE
Confidence            3         12      23444566665  3556766555

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.44  E-value=0.0089  Score=52.16  Aligned_cols=114  Identities=13%  Similarity=0.155  Sum_probs=69.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------ccc
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------AVT  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~al  103 (350)
                      +.+.|+|| +.+|..+|..|++.|.  +|++.|+++++++....++...............  ++.           +.+
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga--~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~   83 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   83 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45667798 8999999999999995  9999999999998777777653211011111111  111           223


Q ss_pred             CCCCEEEEecCCCcCc-------cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEc
Q 018760          104 AGSDLCIVTAGARQIA-------GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~-------g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ..-|++|..+|.....       .++..+   .+.-|    ....+...+.|.+. +.++|++.|
T Consensus        84 g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S  147 (272)
T d1xkqa_          84 GKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS-KGEIVNVSS  147 (272)
T ss_dssp             SCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECC
T ss_pred             CCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc-CCccccccc
Confidence            5789999998864321       112111   12223    44666677777653 456565554

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.43  E-value=0.015  Score=50.00  Aligned_cols=112  Identities=11%  Similarity=0.116  Sum_probs=70.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------ccc
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------AVT  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~al  103 (350)
                      +.+.|+|| +.+|..+|..|++.|.  +|+++|+++++++..+.++....   ........  ++.           +.+
T Consensus        11 KvalITGas~GIG~a~a~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~g---~~~~~~~~Dvt~~~~v~~~~~~~~~~~   85 (251)
T d2c07a1          11 KVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFG---YESSGYAGDVSKKEEISEVINKILTEH   85 (251)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTT---CCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            34556698 8999999999999995  89999999998887777776432   12222111  121           223


Q ss_pred             CCCCEEEEecCCCcCc---cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          104 AGSDLCIVTAGARQIA---GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~---g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ..-|++|..+|.....   ..+..+   .+.-|    ....+...+.|.+.. .+.||++|-
T Consensus        86 g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~IVnisS  146 (251)
T d2c07a1          86 KNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINISS  146 (251)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCC-CeEEEEECC
Confidence            5889999988764322   112111   12223    455666777777654 566777763

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.42  E-value=0.0028  Score=52.85  Aligned_cols=103  Identities=16%  Similarity=0.158  Sum_probs=63.1

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC----cc-ccCCCCEEE
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD----YA-VTAGSDLCI  110 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~----~~-al~~aDiVI  110 (350)
                      ++||.|+|| |.+|+.++..|++.+...+|+...+++....             +..... ..|    .+ ...+.|.||
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~-------------~~~~~~-~~d~~~~~~~~~~~~d~vi   67 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEH-------------PRLDNP-VGPLAELLPQLDGSIDTAF   67 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCC-------------TTEECC-BSCHHHHGGGCCSCCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhc-------------cccccc-ccchhhhhhccccchheee
Confidence            469999999 9999999999999986446665554431100             000000 011    12 245679999


Q ss_pred             EecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          111 VTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       111 i~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      .++|...........+...|......+++..++..... ++.+|
T Consensus        68 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~-~i~~S  110 (212)
T d2a35a1          68 CCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARH-YLVVS  110 (212)
T ss_dssp             ECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCE-EEEEC
T ss_pred             eeeeeeccccccccccccchhhhhhhcccccccccccc-ccccc
Confidence            99876543333344556667777777777777765454 34444

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.40  E-value=0.019  Score=49.60  Aligned_cols=149  Identities=15%  Similarity=0.164  Sum_probs=87.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------cc
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------AV  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~a  102 (350)
                      .+.+.|.|| +.+|..++..|+..|.  +|++.|+++++++....++....   ........  ++.           +.
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g---~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (260)
T d1zema1           5 GKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG---VEARSYVCDVTSEEAVIGTVDSVVRD   79 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            346677798 7899999999999995  89999999998887776665432   12222211  111           22


Q ss_pred             cCCCCEEEEecCCCc--Cc--cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEcCCc------chHHHHHH
Q 018760          103 TAGSDLCIVTAGARQ--IA--GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVANPV------DILTYVAW  165 (350)
Q Consensus       103 l~~aDiVIi~~g~~~--~~--g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNP~------~~~~~~~~  165 (350)
                      +..-|++|..+|...  .+  ..+..+   .+..|    ....+...+.|.+. ..+.||+++-..      +...|.+.
T Consensus        80 ~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~-~~G~II~isS~~~~~~~~~~~~Y~as  158 (260)
T d1zema1          80 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ-NYGRIVNTASMAGVKGPPNMAAYGTS  158 (260)
T ss_dssp             HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHHHSCCTTBHHHHHH
T ss_pred             hCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhh-cCCCCCeeechhhccCCcchHHHHHH
Confidence            457899999988542  22  122222   22223    44566666766653 456677775322      22334443


Q ss_pred             HHhCCCCCcEeeecCCccHHHHHHHHHHHcCCCCcceEEEEEe
Q 018760          166 KLSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIVG  208 (350)
Q Consensus       166 ~~sg~~~~rviG~g~~ld~~r~~~~la~~l~v~p~~v~~~v~G  208 (350)
                      |.         |+      ..+-+.+|..+  .|..|++-.+-
T Consensus       159 Ka---------al------~~ltk~lA~el--~~~gIrVN~I~  184 (260)
T d1zema1         159 KG---------AI------IALTETAALDL--APYNIRVNAIS  184 (260)
T ss_dssp             HH---------HH------HHHHHHHHHHH--GGGTEEEEEEE
T ss_pred             HH---------HH------HHHHHHHHHHh--hhhCCEEEEec
Confidence            32         11      23455666666  45667765553

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.38  E-value=0.013  Score=53.39  Aligned_cols=112  Identities=14%  Similarity=0.242  Sum_probs=69.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc----------------chHHHHHHHHHHhhcCCCceEEEcCCc
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD----------------KLRGEMLDLQHAAAFLPRTKILASVDY  100 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~----------------~l~~~~~dl~~~~~~~~~~~v~~t~~~  100 (350)
                      |||.|+|| |.+|++++..|++.|.  +|+.+|.-..                .............  .....+... |.
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~--~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~-Dl   76 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT--GKSIELYVG-DI   76 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH--CCCCEEEES-CT
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEecCCcccccccccccccccccchHHHHHHHHhhc--CCCcEEEEc-cC
Confidence            79999999 9999999999999995  9999983110                0000011111111  123344322 32


Q ss_pred             ---c----ccC--CCCEEEEecCCCcCc--c---ccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          101 ---A----VTA--GSDLCIVTAGARQIA--G---ESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       101 ---~----al~--~aDiVIi~~g~~~~~--g---~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                         +    .++  +.|+|+-+|+...-+  -   ....+....|+.-...+.+.+.+++.+..++..|
T Consensus        77 ~d~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~s  144 (393)
T d1i24a_          77 CDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLG  144 (393)
T ss_dssp             TSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEC
T ss_pred             CCHHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecc
Confidence               2    233  359999987643211  1   1123456678888889999999988877666665

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.0079  Score=53.59  Aligned_cols=102  Identities=16%  Similarity=0.231  Sum_probs=67.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc----c-ccCCCCEE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY----A-VTAGSDLC  109 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~-al~~aDiV  109 (350)
                      |||.|+|| |.+|+.++..|+..+. .+|+.+|+...+...    +..    .+..++...  ++.    + ..+++|+|
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~-~~V~~ld~~~~~~~~----~~~----~~~~~~i~~Di~~~~~~~~~~~~~~d~V   71 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDH-YEVYGLDIGSDAISR----FLN----HPHFHFVEGDISIHSEWIEYHVKKCDVV   71 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTT-CEEEEEESCCGGGGG----GTT----CTTEEEEECCTTTCSHHHHHHHHHCSEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCCcchhh----hcc----CCCeEEEECccCChHHHHHHHHhCCCcc
Confidence            79999999 9999999999988873 389999986654331    111    112333221  121    2 56789999


Q ss_pred             EEecCCCcCcc--ccHHHHHHhhHHHHHHHHhhhhccCCCe
Q 018760          110 IVTAGARQIAG--ESRLNLLQRNLSLFKAIIPPLVKYSPDC  148 (350)
Q Consensus       110 Ii~~g~~~~~g--~~r~~~~~~n~~i~~~i~~~i~~~~p~a  148 (350)
                      |-+++....+.  .........|+.....+++.+.+....-
T Consensus        72 ih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~  112 (342)
T d2blla1          72 LPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRI  112 (342)
T ss_dssp             EECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEE
T ss_pred             ccccccccccccccCCccccccccccccccccccccccccc
Confidence            99987543221  1234556778888888998888876543

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.37  E-value=0.02  Score=51.82  Aligned_cols=112  Identities=14%  Similarity=0.230  Sum_probs=67.6

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHh-cCCCCeEEEEeC---------CccchHHHHHHHHHHhh----c-CCCceEEEcCCc
Q 018760           37 HTKISVIGT-GNVGMAIAQTILT-QDFVEELALVDA---------KADKLRGEMLDLQHAAA----F-LPRTKILASVDY  100 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~-~~~~~ev~L~D~---------~~~~l~~~~~dl~~~~~----~-~~~~~v~~t~~~  100 (350)
                      .|||.|+|| |.+|+.++..|++ .+.  +|+.+|.         ..+..+.....+.....    . .....+.. .|.
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~--~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Di   78 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEV-GDV   78 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEE-SCT
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCC--EEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEE-Ccc
Confidence            479999999 9999999988876 453  8999994         11223322223332211    0 01233332 232


Q ss_pred             ----------cccCCCCEEEEecCCCcCcc--ccHHHHHHhhHHHHHHHHhhhhccCCCeEEE
Q 018760          101 ----------AVTAGSDLCIVTAGARQIAG--ESRLNLLQRNLSLFKAIIPPLVKYSPDCILL  151 (350)
Q Consensus       101 ----------~al~~aDiVIi~~g~~~~~g--~~r~~~~~~n~~i~~~i~~~i~~~~p~a~vi  151 (350)
                                +..+++|+|+-+++....+.  .........|......+.....+.++..++.
T Consensus        79 ~d~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~  141 (383)
T d1gy8a_          79 RNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIF  141 (383)
T ss_dssp             TCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCHHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCccccc
Confidence                      12357899999986432111  1234445678888888888888887665443

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.35  E-value=0.019  Score=49.52  Aligned_cols=147  Identities=16%  Similarity=0.175  Sum_probs=84.5

Q ss_pred             eEE-EEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------ccc
Q 018760           39 KIS-VIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------AVT  103 (350)
Q Consensus        39 KI~-IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~al  103 (350)
                      ||+ |.|| +.+|.++|..|++.|.  +|++.|+++++++....++....   ........  +|.           +.+
T Consensus         3 KValITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~g---~~~~~~~~Dvs~~~~v~~~~~~~~~~~   77 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG---VEADGRTCDVRSVPEIEALVAAVVERY   77 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC---CcEEEEEeecCCHHHHHHHHHHHHHHh
Confidence            665 5588 8999999999999996  89999999999887777776432   12222211  111           224


Q ss_pred             CCCCEEEEecCCCcCc---cccHH---HHHHhh----HHHHHHHHhhhhc-cCCCeEEEEEcCCc------chHHHHHHH
Q 018760          104 AGSDLCIVTAGARQIA---GESRL---NLLQRN----LSLFKAIIPPLVK-YSPDCILLIVANPV------DILTYVAWK  166 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~---g~~r~---~~~~~n----~~i~~~i~~~i~~-~~p~a~viv~tNP~------~~~~~~~~~  166 (350)
                      ..-|++|..+|.....   ..+..   +.+.-|    ....+.+.+.+.. -...+.+|+++--.      +...|.+.|
T Consensus        78 g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~~~~~~~~Y~asK  157 (257)
T d2rhca1          78 GPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASK  157 (257)
T ss_dssp             CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred             CCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccccccccchhHHHHH
Confidence            5789999998865321   11221   223333    3445555554321 12345566664221      223444444


Q ss_pred             HhCCCCCcEeeecCCccHHHHHHHHHHHcCCCCcceEEEEE
Q 018760          167 LSGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIV  207 (350)
Q Consensus       167 ~sg~~~~rviG~g~~ld~~r~~~~la~~l~v~p~~v~~~v~  207 (350)
                      .         |+      ..+-+.+|..+  .+..|++-.+
T Consensus       158 a---------al------~~ltk~lA~el--~~~gIrVN~I  181 (257)
T d2rhca1         158 H---------GV------VGFTKALGLEL--ARTGITVNAV  181 (257)
T ss_dssp             H---------HH------HHHHHHHHHHT--TTSEEEEEEE
T ss_pred             H---------HH------HHHHHHHHHHh--hhhCcEEEEE
Confidence            3         12      23455677776  4566776555

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=96.35  E-value=0.0012  Score=55.36  Aligned_cols=113  Identities=15%  Similarity=0.120  Sum_probs=67.6

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      ....+|+|||.|.+|+.+|..+..-|.  +|..+|.....-.      .. .    ...   ..+. +.++.||+|+++.
T Consensus        41 l~gk~vgIiG~G~IG~~va~~l~~fg~--~V~~~d~~~~~~~------~~-~----~~~---~~~l~~~l~~sDii~~~~  104 (197)
T d1j4aa1          41 VRDQVVGVVGTGHIGQVFMQIMEGFGA--KVITYDIFRNPEL------EK-K----GYY---VDSLDDLYKQADVISLHV  104 (197)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCCHHH------HH-T----TCB---CSCHHHHHHHCSEEEECS
T ss_pred             ccCCeEEEecccccchhHHHhHhhhcc--cccccCccccccc------cc-c----eee---eccccccccccccccccC
Confidence            346799999999999999999987775  9999998654211      11 1    111   1245 5689999999986


Q ss_pred             CCC-cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeec
Q 018760          114 GAR-QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSG  179 (350)
Q Consensus       114 g~~-~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g  179 (350)
                      ... ...+.-       |.+.       +....+++++||++-..-+-...+.+.  +..+++.|.+
T Consensus       105 plt~~T~~li-------~~~~-------l~~mk~~a~lIN~sRG~ivde~aL~~a--L~~~~i~~a~  155 (197)
T d1j4aa1         105 PDVPANVHMI-------NDES-------IAKMKQDVVIVNVSRGPLVDTDAVIRG--LDSGKIFGYA  155 (197)
T ss_dssp             CCCGGGTTCB-------SHHH-------HHHSCTTEEEEECSCGGGBCHHHHHHH--HHHTSEEEEE
T ss_pred             Cccccccccc-------cHHH-------HhhhCCccEEEecCchhhhhhHHHHHH--Hhcccchhee
Confidence            422 111111       1222       233368899999985443333333332  1223565553

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.32  E-value=0.0042  Score=47.31  Aligned_cols=35  Identities=14%  Similarity=0.333  Sum_probs=31.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      +.||+|||+|.+|.-+|..|...|.  +|+|+++.+.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~--~Vtlv~~~~~   56 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGI--DSYIFARGNR   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTC--EEEEECSSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccc--cceeeehhcc
Confidence            5799999999999999999998885  9999998653

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.32  E-value=0.0093  Score=51.87  Aligned_cols=110  Identities=11%  Similarity=0.136  Sum_probs=68.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------ccc
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------AVT  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~al  103 (350)
                      +.+.|+|| +.+|..+|..|++.|.  +|++.|+++++++....++....    .......  ++.           +.+
T Consensus         7 KvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~----~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (268)
T d2bgka1           7 KVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSPD----VISFVHCDVTKDEDVRNLVDTTIAKH   80 (268)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCTT----TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcCCC----ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45667798 8999999999999995  99999999998886666654321    1111111  111           123


Q ss_pred             CCCCEEEEecCCCc-Cc----cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEc
Q 018760          104 AGSDLCIVTAGARQ-IA----GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       104 ~~aDiVIi~~g~~~-~~----g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ...|++|..+|... .+    ..+..+   .+.-|    ....+...+.|.+.. .+-+|+++
T Consensus        81 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~ii~is  142 (268)
T d2bgka1          81 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK-KGSIVFTA  142 (268)
T ss_dssp             SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT-CEEEEEEC
T ss_pred             CCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcC-CCCccccc
Confidence            57899999987532 21    122211   22223    556677777777654 44455554

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.29  E-value=0.0021  Score=52.02  Aligned_cols=66  Identities=23%  Similarity=0.263  Sum_probs=43.1

Q ss_pred             CeEEEEcCChhHHH-HHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-c-CCCCEEEEec
Q 018760           38 TKISVIGTGNVGMA-IAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-T-AGSDLCIVTA  113 (350)
Q Consensus        38 ~KI~IIGAG~vG~~-~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l-~~aDiVIi~~  113 (350)
                      +||+|||+|.+|.. ....+...+- .+++++|.++++++.    +.+...   ...+  .+|+++ + .+.|+|+++.
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~-~~~~~~d~~~~~~~~----~~~~~~---~~~~--~~~~~~ll~~~iD~V~I~t   70 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPD-IELVLCTRNPKVLGT----LATRYR---VSAT--CTDYRDVLQYGVDAVMIHA   70 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTT-EEEEEECSCHHHHHH----HHHHTT---CCCC--CSSTTGGGGGCCSEEEECS
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCC-cEEEEEECCHHHHHH----HHHhcc---cccc--cccHHHhcccccceecccc
Confidence            79999999999976 4555655543 388899999887664    333221   1122  345543 3 3789999985

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.013  Score=47.21  Aligned_cols=100  Identities=17%  Similarity=0.126  Sum_probs=66.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGAR  116 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~~  116 (350)
                      .++++|+|.|.+|..+|..+...+.  .|..+|+++-++      ++..+.   ..++.  +-.+++..+|+||.+.|..
T Consensus        24 Gk~v~V~GyG~iG~g~A~~~rg~G~--~V~v~e~dp~~a------l~A~~d---G~~v~--~~~~a~~~adivvtaTGn~   90 (163)
T d1li4a1          24 GKVAVVAGYGDVGKGCAQALRGFGA--RVIITEIDPINA------LQAAME---GYEVT--TMDEACQEGNIFVTTTGCI   90 (163)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHH------HHHHHT---TCEEC--CHHHHTTTCSEEEECSSCS
T ss_pred             CCEEEEeccccccHHHHHHHHhCCC--eeEeeecccchh------HHhhcC---ceEee--ehhhhhhhccEEEecCCCc
Confidence            4589999999999999999999885  999999998432      332221   22332  2237799999999997753


Q ss_pred             cCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc-CCcchHHHHHHH
Q 018760          117 QIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA-NPVDILTYVAWK  166 (350)
Q Consensus       117 ~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t-NP~~~~~~~~~~  166 (350)
                      .-  ..               .+.+++..+.+++.|++ -..++-...+.+
T Consensus        91 ~v--I~---------------~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~  124 (163)
T d1li4a1          91 DI--IL---------------GRHFEQMKDDAIVCNIGHFDVEIDVKWLNE  124 (163)
T ss_dssp             CS--BC---------------HHHHTTCCTTEEEEECSSSTTSBCHHHHHH
T ss_pred             cc--hh---------------HHHHHhccCCeEEEEeccccceecHHHHhh
Confidence            21  11               23344556788888886 555554444433

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.0049  Score=46.72  Aligned_cols=36  Identities=17%  Similarity=0.311  Sum_probs=31.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      .+.||+|||+|.+|.-+|..|...|.  +|.+++..+.
T Consensus        20 ~p~~vvIiGgG~ig~E~A~~l~~~G~--~Vtlve~~~~   55 (116)
T d1gesa2          20 LPERVAVVGAGYIGVELGGVINGLGA--KTHLFEMFDA   55 (116)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSSS
T ss_pred             CCCEEEEECCChhhHHHHHHhhcccc--EEEEEeecch
Confidence            34699999999999999999999885  9999998653

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.23  E-value=0.0046  Score=53.19  Aligned_cols=113  Identities=13%  Similarity=0.127  Sum_probs=65.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC--------ccccCCC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD--------YAVTAGS  106 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~--------~~al~~a  106 (350)
                      +.+++.|.|| +.+|..++..|++.|.  +|++.|+++++++....++.. ..+  .+++.-..+        .+.+..-
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~--~V~~~~r~~~~l~~~~~~~~~-~~~--~~Dv~~~~~v~~~~~~~~~~~g~i   78 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEAVGA-HPV--VMDVADPASVERGFAEALAHLGRL   78 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTTC-EEE--ECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCC-eEE--EEecCCHHHHHHHHHHHHHhcCCc
Confidence            4457788898 7899999999999996  899999998877643332210 000  001100000        1223578


Q ss_pred             CEEEEecCCCcC-c--cccHHH---HHH----hhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          107 DLCIVTAGARQI-A--GESRLN---LLQ----RNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       107 DiVIi~~g~~~~-~--g~~r~~---~~~----~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |++|..+|.... +  ..+..+   .+.    ......+.+.+.+.+.. .+.+++.+
T Consensus        79 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~~~i~~~s  135 (242)
T d1ulsa_          79 DGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKN-PGSIVLTA  135 (242)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CEEEEEEC
T ss_pred             eEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccc-cceeeeec
Confidence            999999886432 1  122221   122    23456667777776644 44444443

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.22  E-value=0.0053  Score=55.15  Aligned_cols=72  Identities=10%  Similarity=0.062  Sum_probs=54.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEec
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTA  113 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~  113 (350)
                      ....++|||+|..+...+..+...-.+.+|.++++++++.+..+.++++..     ..+.. +..+++.+||+|+.+.
T Consensus       124 ~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~-----~~~~~-~~~~a~~~aDiV~taT  195 (320)
T d1omoa_         124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRG-----ISASV-QPAEEASRCDVLVTTT  195 (320)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTT-----CCEEE-CCHHHHTSSSEEEECC
T ss_pred             CccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcC-----Ccccc-chhhhhccccEEEEec
Confidence            345899999999999888777665557899999999998887766666432     23332 2447789999998874

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.22  E-value=0.014  Score=43.82  Aligned_cols=72  Identities=14%  Similarity=0.131  Sum_probs=49.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc-CCccccCCCCEEEEe
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS-VDYAVTAGSDLCIVT  112 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t-~~~~al~~aDiVIi~  112 (350)
                      .-+..||.|||+|.+|...+..|+..|.  +|++++.....-   ...+.+.    ...++... -+.+++.++++|+.+
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga--~v~v~~~~~~~~---~~~~~~~----~~i~~~~~~~~~~dl~~~~lv~~a   79 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGA--RLTVNALTFIPQ---FTVWANE----GMLTLVEGPFDETLLDSCWLAIAA   79 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTB--EEEEEESSCCHH---HHHHHTT----TSCEEEESSCCGGGGTTCSEEEEC
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCC--eEEEEeccCChH---HHHHHhc----CCceeeccCCCHHHhCCCcEEeec
Confidence            3445699999999999999999999995  899998865421   1122221    12333321 123579999999998


Q ss_pred             cC
Q 018760          113 AG  114 (350)
Q Consensus       113 ~g  114 (350)
                      .+
T Consensus        80 t~   81 (113)
T d1pjqa1          80 TD   81 (113)
T ss_dssp             CS
T ss_pred             CC
Confidence            53

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0034  Score=54.42  Aligned_cols=112  Identities=18%  Similarity=0.192  Sum_probs=67.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC--------ccccCCCC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD--------YAVTAGSD  107 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~--------~~al~~aD  107 (350)
                      .+.+.|.|| +.+|.++|..|++.|.  +|++.|+++++++....++.+...+  ..++.-..+        .+.+..-|
T Consensus         6 GK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~~~--~~Dvs~~~~v~~~~~~~~~~~g~iD   81 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPGAVFI--LCDVTQEDDVKTLVSETIRRFGRLD   81 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTTEEEE--ECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCCeEE--EccCCCHHHHHHHHHHHHHhcCCCC
Confidence            346778898 8999999999999996  9999999998877544443322111  001100000        12245789


Q ss_pred             EEEEecCCCcCc----cccHHH---HHH----hhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          108 LCIVTAGARQIA----GESRLN---LLQ----RNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       108 iVIi~~g~~~~~----g~~r~~---~~~----~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ++|..+|....+    ..+..+   .+.    -...+.+...+.|++.  .+.||+++
T Consensus        82 ilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~Ii~is  137 (250)
T d1ydea1          82 CVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--QGNVINIS  137 (250)
T ss_dssp             EEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEC
T ss_pred             EEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC--CCCCcccc
Confidence            999998853221    112221   122    2355677777777764  35677775

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.21  E-value=0.0045  Score=53.38  Aligned_cols=116  Identities=13%  Similarity=0.209  Sum_probs=69.6

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC--------ccccCCCC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD--------YAVTAGSD  107 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~--------~~al~~aD  107 (350)
                      .+.+.|.|| +.+|..+|..|++.|.  +|++.|+++++++....++.....+. ..++.-..+        .+.+..-|
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~-~~Dv~~~~~v~~~~~~~~~~~g~id   82 (244)
T d1nffa_           6 GKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELADAARYV-HLDVTQPAQWKAAVDTAVTAFGGLH   82 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGGGEEEE-ECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhCcceEE-EeecCCHHHHHHHHHHHHHHhCCCe
Confidence            345667798 8999999999999996  99999999998876666654322110 011100000        12245789


Q ss_pred             EEEEecCCCcC-c--cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          108 LCIVTAGARQI-A--GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       108 iVIi~~g~~~~-~--g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      ++|..+|.... +  ..+..+   .+.-|    ..+.+...+.|.+. +.+.||+++-.
T Consensus        83 ilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~isS~  140 (244)
T d1nffa_          83 VLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA-GRGSIINISSI  140 (244)
T ss_dssp             EEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             EEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhc-CcceEEecccc
Confidence            99999886432 1  122211   22223    44556666777664 35667777543

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.20  E-value=0.017  Score=41.70  Aligned_cols=71  Identities=23%  Similarity=0.290  Sum_probs=51.5

Q ss_pred             CCeEEEEcCChhHH-HHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCC
Q 018760           37 HTKISVIGTGNVGM-AIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGA  115 (350)
Q Consensus        37 ~~KI~IIGAG~vG~-~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~  115 (350)
                      .|||-+||-|.+|. ++|..|.+.|.  +|.-.|+.+..   ....|+..     ..++....+.+.++++|+||.+...
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~--~VsGSD~~~~~---~t~~L~~~-----Gi~i~~gh~~~~i~~~d~vV~SsAI   70 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGN--DVYGSNIEETE---RTAYLRKL-----GIPIFVPHSADNWYDPDLVIKTPAV   70 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSSCCH---HHHHHHHT-----TCCEESSCCTTSCCCCSEEEECTTC
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCC--eEEEEeCCCCh---hHHHHHHC-----CCeEEeeecccccCCCCEEEEecCc
Confidence            48999999988887 57888999996  99999987632   22235542     2355544445678999999999776


Q ss_pred             Cc
Q 018760          116 RQ  117 (350)
Q Consensus       116 ~~  117 (350)
                      +.
T Consensus        71 ~~   72 (89)
T d1j6ua1          71 RD   72 (89)
T ss_dssp             CT
T ss_pred             CC
Confidence            63

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.02  Score=50.58  Aligned_cols=117  Identities=15%  Similarity=0.212  Sum_probs=72.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEE-cCC---c----------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILA-SVD---Y----------  100 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~-t~~---~----------  100 (350)
                      +.+.+.|+|| +.+|.++|..|+..|.  +|++.|+++++++..+.++..........++.. ..|   .          
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~Ga--~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            4456777898 8999999999999996  899999999999887777765321111112221 112   1          


Q ss_pred             -cccCCCCEEEEecCCCcC-c--cccHH---HHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          101 -AVTAGSDLCIVTAGARQI-A--GESRL---NLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       101 -~al~~aDiVIi~~g~~~~-~--g~~r~---~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                       +.+..-|++|..+|.... +  ..+..   ..+.-|    ....+.+++.+.+... +.+|+.+.
T Consensus        89 ~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-g~Ii~~ss  153 (297)
T d1yxma1          89 LDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHG-GSIVNIIV  153 (297)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHC-EEEEEECC
T ss_pred             HHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccc-cccccccc
Confidence             123578999999875432 1  11211   122333    4456677777776544 44555543

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.17  E-value=0.0039  Score=54.02  Aligned_cols=114  Identities=16%  Similarity=0.159  Sum_probs=68.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC--------ccccCCCCE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD--------YAVTAGSDL  108 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~--------~~al~~aDi  108 (350)
                      +++.|.|| +.+|.++|..|++.|.  +|++.|+++++++....++.....+ ...++.-..+        .+.+..-|+
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~~~~~~-~~~Dv~~~~~~~~~~~~~~~~~g~iDi   83 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELGERSMF-VRHDVSSEADWTLVMAAVQRRLGTLNV   83 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCTTEEE-ECCCTTCHHHHHHHHHHHHHHHCSCCE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCCeEE-EEeecCCHHHHHHHHHHHHHHhCCCCe
Confidence            35556688 7899999999999996  8999999998887665555322110 0111110001        123457899


Q ss_pred             EEEecCCCcCc---cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          109 CIVTAGARQIA---GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       109 VIi~~g~~~~~---g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      +|..+|.....   ..+..+   .+.-|    ....+...+.|++.  .+.||+++-.
T Consensus        84 lVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~G~Iv~isS~  139 (253)
T d1hxha_          84 LVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKET--GGSIINMASV  139 (253)
T ss_dssp             EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT--CEEEEEECCG
T ss_pred             EEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CCceecccch
Confidence            99998864321   112221   12223    45677777777653  4777777643

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.17  E-value=0.033  Score=44.99  Aligned_cols=56  Identities=18%  Similarity=0.251  Sum_probs=41.2

Q ss_pred             chhhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           16 DLTQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      .++-+|...++ ++.   -++..+|+|+|+|.+|...+..+...+. .+|+.+|++++|++
T Consensus        11 a~~Ta~~a~~~-~a~---~~~G~~VlV~GaGgvGl~a~~~ak~~G~-~~Vi~~d~~~~kl~   66 (174)
T d1p0fa2          11 GFATGYGAAVN-TAK---VTPGSTCAVFGLGGVGFSAIVGCKAAGA-SRIIGVGTHKDKFP   66 (174)
T ss_dssp             HHHHHHHHHHT-TTC---CCTTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHH
T ss_pred             HHHHHHHHHHH-hhC---CCCCCEEEEECCCchhHHHHHHHHHcCC-ceeeccCChHHHHH
Confidence            44555543332 332   3444689999999999999888887775 58999999999886

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.14  E-value=0.0075  Score=45.49  Aligned_cols=36  Identities=17%  Similarity=0.386  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      .+.|++|||+|.+|.-+|..|...|.  +|+|++..+.
T Consensus        20 ~p~~vvIiGgG~~G~E~A~~l~~~g~--~Vtlve~~~~   55 (115)
T d1lvla2          20 LPQHLVVVGGGYIGLELGIAYRKLGA--QVSVVEARER   55 (115)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTC--EEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHhhccc--ceEEEeeecc
Confidence            34699999999999999999999985  9999998654

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0054  Score=57.39  Aligned_cols=73  Identities=15%  Similarity=0.332  Sum_probs=50.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc-------------------cchHHHHHHHHHHhhcCCCceEEEc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA-------------------DKLRGEMLDLQHAAAFLPRTKILAS   97 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~v~~t   97 (350)
                      ..||.|||+|.+|+.++..|+..|+ ++|.|+|-|.                   .|++..+..++..   .+..++...
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gv-g~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~---np~v~i~~~  112 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGF-RQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDR---VPNCNVVPH  112 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTC-CCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHH---STTCCCEEE
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCC-CeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhh---CCCCceEee
Confidence            4699999999999999999999997 6899999653                   1333223333332   244454433


Q ss_pred             CC----c--cccCCCCEEEEec
Q 018760           98 VD----Y--AVTAGSDLCIVTA  113 (350)
Q Consensus        98 ~~----~--~al~~aDiVIi~~  113 (350)
                      ..    .  +-++++|+||.+.
T Consensus       113 ~~~i~~~~~~~~~~~DlVi~~~  134 (426)
T d1yovb1         113 FNKIQDFNDTFYRQFHIIVCGL  134 (426)
T ss_dssp             CSCGGGBCHHHHTTCSEEEECC
T ss_pred             eccccchHHHHHHhcchheecc
Confidence            21    1  3378999999885

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.13  E-value=0.032  Score=48.22  Aligned_cols=113  Identities=11%  Similarity=0.122  Sum_probs=69.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc-chHHHHHHHHHHhhcCCCceEEEc--CCc-----------cc
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD-KLRGEMLDLQHAAAFLPRTKILAS--VDY-----------AV  102 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~-~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~a  102 (350)
                      +.+.|+|| +.+|.++|..|++.|.  +|++.|++.+ +++....+++...   ........  ++.           +.
T Consensus         8 K~alITGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~g---~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG---GEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT---CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHhcC---CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            35666688 8999999999999996  9999999754 5665555555422   11111111  111           12


Q ss_pred             cCCCCEEEEecCCCcC-c--cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 TAGSDLCIVTAGARQI-A--GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~-~--g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +..-|++|..+|.... +  ..+..+   .+.-|    ....+...+.|.+....+.|+++|-
T Consensus        83 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS  145 (261)
T d1geea_          83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSS  145 (261)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             hCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhcccccccccccccc
Confidence            3578999999886432 1  122222   22223    5567788888877666666776653

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.11  E-value=0.028  Score=50.12  Aligned_cols=111  Identities=13%  Similarity=0.187  Sum_probs=67.9

Q ss_pred             eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc-cchHHHHHHHHHHhhcCCCceEEEc--CCccc----cC--CCCE
Q 018760           39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA-DKLRGEMLDLQHAAAFLPRTKILAS--VDYAV----TA--GSDL  108 (350)
Q Consensus        39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~-~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a----l~--~aDi  108 (350)
                      .|.|+|| |.+|+.++..|+..+.  +|+.+|... ...+. .........  ...++...  +|.+.    ++  +.|+
T Consensus         3 ~ILVTGatGfIG~~lv~~Ll~~g~--~V~~~d~~~~~~~~~-~~~~~~~~~--~~v~~~~~Dl~d~~~l~~~~~~~~~d~   77 (347)
T d1z45a2           3 IVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDS-VARLEVLTK--HHIPFYEVDLCDRKGLEKVFKEYKIDS   77 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHH-HHHHHHHHT--SCCCEEECCTTCHHHHHHHHHHSCCCE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--eEEEEECCCCcchhH-HHhHHhhcc--cCCeEEEeecCCHHHHHHHHhccCCCE
Confidence            4889999 9999999999999985  899998632 22221 112221111  12333322  12222    22  7899


Q ss_pred             EEEecCCCcC--ccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          109 CIVTAGARQI--AGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       109 VIi~~g~~~~--~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ||-+++....  ..+........|......+.+...+.....++..-|
T Consensus        78 VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS  125 (347)
T d1z45a2          78 VIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSS  125 (347)
T ss_dssp             EEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             EEEccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecc
Confidence            9998765421  122345556678888888888888877665544444

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.08  E-value=0.0023  Score=52.23  Aligned_cols=37  Identities=14%  Similarity=0.389  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      .+.||+|||||..|...|..|.+.|+ ++|+++|..+.
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~-~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGY-SDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTC-CCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCC-CeEEEEEecCc
Confidence            35699999999999999999999997 46999998653

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.08  E-value=0.032  Score=47.30  Aligned_cols=107  Identities=12%  Similarity=0.262  Sum_probs=65.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC----ccccCCCCEEE
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD----YAVTAGSDLCI  110 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~----~~al~~aDiVI  110 (350)
                      +.+++.|+|| +.+|..++..|++.|.  +|++.|+++++++.    ..+.. .  ...+  +.+    .+.+..-|++|
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga--~V~~~~r~~~~l~~----~~~~~-~--~~Dv--~~~~~~~~~~~g~iD~lV   71 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNEELLKR----SGHRY-V--VCDL--RKDLDLLFEKVKEVDILV   71 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHH----TCSEE-E--ECCT--TTCHHHHHHHSCCCSEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHh----cCCcE-E--Ecch--HHHHHHHHHHhCCCcEEE
Confidence            3457888998 8999999999999995  99999999875542    11100 0  0011  111    24577899999


Q ss_pred             EecCCCcCc---cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEc
Q 018760          111 VTAGARQIA---GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       111 i~~g~~~~~---g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ..+|.+...   ..+..+   .+.-|    ..+.+.+.+.+++.. .+.+|+++
T Consensus        72 nnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~-~G~ii~i~  124 (234)
T d1o5ia_          72 LNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAIT  124 (234)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             ecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccc-cccccccc
Confidence            998865422   122222   12223    446677777777644 45555554

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.07  E-value=0.003  Score=55.16  Aligned_cols=36  Identities=14%  Similarity=0.405  Sum_probs=32.0

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      .++.||+|||||..|.+.|+.|.+.|+  +|+|+|.++
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~--~V~vlE~~~   63 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGH--QVTVLEASE   63 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            355699999999999999999999996  999999754

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.06  E-value=0.015  Score=50.29  Aligned_cols=113  Identities=19%  Similarity=0.223  Sum_probs=66.7

Q ss_pred             eEE-EEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------ccc
Q 018760           39 KIS-VIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------AVT  103 (350)
Q Consensus        39 KI~-IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~al  103 (350)
                      |++ |.|| +.+|.+++..|++.|.  +|++.|+++++++....++...............  ++.           +.+
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   83 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            555 5587 8999999999999995  8999999999998777777654211011222211  111           123


Q ss_pred             CCCCEEEEecCCCcC-----c--cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEc
Q 018760          104 AGSDLCIVTAGARQI-----A--GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~-----~--g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ..-|++|..+|....     +  ..+..+   .+.-|    ....+.+.+.|++. ..++|++.|
T Consensus        84 g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S  147 (264)
T d1spxa_          84 GKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST-KGEIVNISS  147 (264)
T ss_dssp             SCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECC
T ss_pred             CCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccc-cCcceeeee
Confidence            578999999875321     1  112111   12223    44666677777653 345555554

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.03  E-value=0.0071  Score=49.42  Aligned_cols=69  Identities=10%  Similarity=0.151  Sum_probs=43.8

Q ss_pred             CCCeEEEEcCChhHHH-HHHHHHhcCCCCeEE-EEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-c--CCCCEEE
Q 018760           36 RHTKISVIGTGNVGMA-IAQTILTQDFVEELA-LVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-T--AGSDLCI  110 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~-~a~~l~~~~~~~ev~-L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l--~~aDiVI  110 (350)
                      +++||+|||+|.+|.. .+..+...+-.-+|+ ++|.++++++.    +.+...   ..++  .+++++ +  .+.|+|+
T Consensus         2 kkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~----~~~~~~---~~~~--~~~~~ell~~~~id~v~   72 (181)
T d1zh8a1           2 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEE----FAKMVG---NPAV--FDSYEELLESGLVDAVD   72 (181)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHH----HHHHHS---SCEE--ESCHHHHHHSSCCSEEE
T ss_pred             CCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhh----hhcccc---ccce--eeeeeccccccccceee
Confidence            3579999999999987 466666543222444 78999877653    333221   1233  356643 3  4689999


Q ss_pred             Eec
Q 018760          111 VTA  113 (350)
Q Consensus       111 i~~  113 (350)
                      ++.
T Consensus        73 I~t   75 (181)
T d1zh8a1          73 LTL   75 (181)
T ss_dssp             ECC
T ss_pred             ccc
Confidence            985

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0042  Score=47.76  Aligned_cols=35  Identities=11%  Similarity=0.238  Sum_probs=31.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      +.||+|||+|.+|.-+|..|...|.  +|++++..+.
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~--~Vtlv~~~~~   56 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGS--KTSLMIRHDK   56 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCc--EEEEEeeccc
Confidence            4699999999999999999999985  9999999754

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.01  E-value=0.037  Score=47.69  Aligned_cols=113  Identities=12%  Similarity=0.077  Sum_probs=68.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------c
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------A  101 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~  101 (350)
                      +.+++.|.|| +.+|..+|..|++.|.  +|++.|+++++++....++.....   .......  ++.           +
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~   81 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKGF---QVTGSVCDASLRPEREKLMQTVSS   81 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC---CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC---ceEEEeccCCCHHHHHHHHHHHHH
Confidence            3456777798 8999999999999996  999999999988877766664321   1121111  111           1


Q ss_pred             ccC-CCCEEEEecCCCcC-c--cccHHH---HH----HhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          102 VTA-GSDLCIVTAGARQI-A--GESRLN---LL----QRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       102 al~-~aDiVIi~~g~~~~-~--g~~r~~---~~----~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      .+. .-|++|..+|.... +  ..+..+   .+    .......+.+.+.|++.. .+.||+++
T Consensus        82 ~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~is  144 (259)
T d1xq1a_          82 MFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMS  144 (259)
T ss_dssp             HHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC
T ss_pred             HhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccc-cccccccc
Confidence            122 37999999886431 1  122211   12    233455667777776644 45566665

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=95.99  E-value=0.062  Score=46.16  Aligned_cols=113  Identities=10%  Similarity=0.077  Sum_probs=69.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------c
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------A  101 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~  101 (350)
                      +.+.+.|.|| +.+|..++..|++.|.  +|++.|+++++++....++.....   .......  ++.           +
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g~---~~~~~~~Dv~~~~~v~~~~~~~~~   81 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKGF---KVEASVCDLSSRSERQELMNTVAN   81 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC---EEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC---CceEEEeeCCCHHHHHHHHHHHHH
Confidence            3456778898 7999999999999995  899999999988877666654321   1111111  111           1


Q ss_pred             ccC-CCCEEEEecCCCcCc---cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEc
Q 018760          102 VTA-GSDLCIVTAGARQIA---GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       102 al~-~aDiVIi~~g~~~~~---g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      .+. .-|++|..+|.....   ..+..+   .+.-|    ..+.+...+.+.+. +.+.||+++
T Consensus        82 ~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~is  144 (259)
T d2ae2a_          82 HFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFIS  144 (259)
T ss_dssp             HTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEEC
T ss_pred             HhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhh-ccccccccc
Confidence            123 479999998864321   122222   23333    33455566666654 456666665

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.96  E-value=0.055  Score=47.73  Aligned_cols=115  Identities=14%  Similarity=0.119  Sum_probs=67.1

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc---------chHHHHHHHHHHhhcCCCceEEEcCCc---
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD---------KLRGEMLDLQHAAAFLPRTKILASVDY---  100 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~---------~l~~~~~dl~~~~~~~~~~~v~~t~~~---  100 (350)
                      .-+.+.+.|.|| +.+|..+|..|++.|.  .|++.|++.+         .++....++....   ...... .++.   
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga--~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d-~~~~~~~   77 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG---GKAVAN-YDSVEAG   77 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT---CEEEEE-CCCGGGH
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcc---cccccc-cchHHHH
Confidence            334445666698 8999999999999996  8999998653         2222223332211   111111 1121   


Q ss_pred             --------cccCCCCEEEEecCCCcCc---cccHHH---H----HHhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          101 --------AVTAGSDLCIVTAGARQIA---GESRLN---L----LQRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       101 --------~al~~aDiVIi~~g~~~~~---g~~r~~---~----~~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                              +.+..-|++|..+|.....   ..+..+   .    +.......+.+.+.|.+.. .+.||+++-
T Consensus        78 ~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IV~isS  149 (302)
T d1gz6a_          78 EKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTAS  149 (302)
T ss_dssp             HHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCC-CcEEEEeCC
Confidence                    2345789999998865321   112211   2    2233557777888887754 466777763

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.96  E-value=0.048  Score=44.10  Aligned_cols=73  Identities=14%  Similarity=0.191  Sum_probs=49.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc-CC--cc------ccCCC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS-VD--YA------VTAGS  106 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t-~~--~~------al~~a  106 (350)
                      +.-.|+|+|+|.+|...+..+...+. .+|+.+|++++|++ .+.++--..      -+... .+  .+      .-.++
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~-~~Vi~vd~~~~kl~-~Ak~~GA~~------~in~~~~~~~~~~~~~~~~g~G~  100 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGA-SRIIGIDLNKDKFE-KAMAVGATE------CISPKDSTKPISEVLSEMTGNNV  100 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHH-HHHHHTCSE------EECGGGCSSCHHHHHHHHHTSCC
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCC-ceEEEecCcHHHHH-HHHhcCCcE------EECccccchHHHHHHHHhccccc
Confidence            34579999999999999888887775 58999999999987 343332111      11101 01  11      12589


Q ss_pred             CEEEEecCCC
Q 018760          107 DLCIVTAGAR  116 (350)
Q Consensus       107 DiVIi~~g~~  116 (350)
                      |+||.+.|.+
T Consensus       101 d~vi~~~g~~  110 (176)
T d1d1ta2         101 GYTFEVIGHL  110 (176)
T ss_dssp             CEEEECSCCH
T ss_pred             eEEEEeCCch
Confidence            9999997643

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.95  E-value=0.004  Score=53.08  Aligned_cols=35  Identities=14%  Similarity=0.329  Sum_probs=31.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      ..||+|||||..|.+.|..|.+.|+  +++++|.+++
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~--~v~v~Er~~~   38 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGV--DVDVYERSPQ   38 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC--CEEEEeCCCC
Confidence            4599999999999999999999997  9999998653

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.95  E-value=0.049  Score=46.85  Aligned_cols=115  Identities=11%  Similarity=0.097  Sum_probs=69.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------c
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------A  101 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~  101 (350)
                      +.+++.|+|| +.+|..++..|++.|.  +|++.|+++++++....++.....   .......  ++.           +
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~~~~~~~---~~~~~~~D~s~~~~~~~~~~~~~~   79 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKGL---NVEGSVCDLLSRTERDKLMQTVAH   79 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC---CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC---CceEEEeecCCHHHHHHHHHHHHH
Confidence            3457889998 8999999999999996  999999999888876666654321   1222111  111           1


Q ss_pred             cc-CCCCEEEEecCCCcCc---cccHHH---HHH----hhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          102 VT-AGSDLCIVTAGARQIA---GESRLN---LLQ----RNLSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       102 al-~~aDiVIi~~g~~~~~---g~~r~~---~~~----~n~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      .+ ..-|++|.++|.....   ..+..+   .+.    ......+.+.+.+.+.. .+.+|+++-.
T Consensus        80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~-~g~ii~isS~  144 (258)
T d1ae1a_          80 VFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ-NGNVIFLSSI  144 (258)
T ss_dssp             HTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SEEEEEECCG
T ss_pred             HhCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccc-cccccccccc
Confidence            12 2378988888754321   112111   122    23445566666666644 5556666533

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=95.91  E-value=0.0054  Score=49.33  Aligned_cols=71  Identities=18%  Similarity=0.226  Sum_probs=40.4

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEE-EeCCccchHHHHHHHHHHhhcCCCceEEEcCCc----c--ccCCCC
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELAL-VDAKADKLRGEMLDLQHAAAFLPRTKILASVDY----A--VTAGSD  107 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L-~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~----~--al~~aD  107 (350)
                      .+++||+|||+|.+|..+...+++.....|+++ .|++.+...   ..+.+..    ...+. ...+    +  ++.+.|
T Consensus         2 ~kkirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~---~~~a~~~----~i~~~-~~~~d~l~~~~~~~~iD   73 (157)
T d1nvmb1           2 NQKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDG---LARAQRM----GVTTT-YAGVEGLIKLPEFADID   73 (157)
T ss_dssp             CSCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHH---HHHHHHT----TCCEE-SSHHHHHHHSGGGGGEE
T ss_pred             CCCcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccc---hhhhhhc----CCccc-ccceeeeeecccccccC
Confidence            356899999999999875544444332236655 587765321   1232222    12222 2111    1  356899


Q ss_pred             EEEEec
Q 018760          108 LCIVTA  113 (350)
Q Consensus       108 iVIi~~  113 (350)
                      +|+++.
T Consensus        74 iVf~AT   79 (157)
T d1nvmb1          74 FVFDAT   79 (157)
T ss_dssp             EEEECS
T ss_pred             EEEEcC
Confidence            999984

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=95.91  E-value=0.0053  Score=53.28  Aligned_cols=110  Identities=15%  Similarity=0.145  Sum_probs=69.3

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------cc
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------AV  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~a  102 (350)
                      .+++.|+|| +.+|..+|..|++.|.  +|++.|+++++++....++...      ......  ++.           +.
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~------~~~~~~Dv~~~~~v~~~~~~~~~~   76 (254)
T d1hdca_           5 GKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELGDA------ARYQHLDVTIEEDWQRVVAYAREE   76 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTGGG------EEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCc------eEEEEcccCCHHHHHHHHHHHHHH
Confidence            457888898 7999999999999996  8999999998877555444321      111111  111           22


Q ss_pred             cCCCCEEEEecCCCcC-c--cccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          103 TAGSDLCIVTAGARQI-A--GESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~-~--g~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      +...|++|..+|.... +  ..+.   ...+.-|    ....+.+.+.|.+.. .+.||+++-
T Consensus        77 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~-~G~II~isS  138 (254)
T d1hdca_          77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISS  138 (254)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcC-CCeeccccc
Confidence            4578999999886432 1  1121   1223333    456667777776644 566777753

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.90  E-value=0.0042  Score=55.59  Aligned_cols=38  Identities=24%  Similarity=0.546  Sum_probs=32.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      .++||+|||||..|.+.|..|+..+...+|++++.+..
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            44589999999999999999988887679999999764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.85  E-value=0.014  Score=47.37  Aligned_cols=40  Identities=18%  Similarity=0.179  Sum_probs=33.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      +.-+|+|+|+|.+|...+..+...+. ..|+.+|.+++|++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~   66 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGA-GRIIGVGSRPICVE   66 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTC-SCEEEECCCHHHHH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccc-cccccccchhhhHH
Confidence            44589999999999998887777664 47999999998876

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=95.82  E-value=0.014  Score=51.62  Aligned_cols=113  Identities=16%  Similarity=0.211  Sum_probs=69.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCC----CCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcC--C---c-cccCCC
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDF----VEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV--D---Y-AVTAGS  106 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~----~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~--~---~-~al~~a  106 (350)
                      |||.|+|+ |.+|+.++..|++.+.    ..+++.+|.......  ...+..... ....++....  +   . ....+.
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~--~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~   77 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGN--RANLAPVDA-DPRLRFVHGDIRDAGLLARELRGV   77 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCC--GGGGGGGTT-CTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCcccc--HhHhhhhhc-CCCeEEEEeccccchhhhcccccc
Confidence            79999998 9999999999999874    357888886321111  001111111 1123333221  1   1 347899


Q ss_pred             CEEEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          107 DLCIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       107 DiVIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |+|+.+++.+...  .....+.+..|+.....+.+.+.++...- +|..|
T Consensus        78 d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~-~I~~S  126 (322)
T d1r6da_          78 DAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGR-VVHVS  126 (322)
T ss_dssp             CEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCE-EEEEE
T ss_pred             ceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCce-EEEee
Confidence            9999987654321  12334556778888889999988876544 44443

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.0068  Score=52.13  Aligned_cols=109  Identities=16%  Similarity=0.143  Sum_probs=67.7

Q ss_pred             eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-----------cccCCC
Q 018760           39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-----------AVTAGS  106 (350)
Q Consensus        39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-----------~al~~a  106 (350)
                      .+.|.|| +.+|.+++..|++.|.  +|++.|+++++++....++...... ...++   ++.           +.+..-
T Consensus         6 ~alITGas~GIG~a~a~~l~~~G~--~Vv~~~r~~~~l~~~~~~~~~~~~~-~~~Dv---~~~~~v~~~~~~~~~~~g~i   79 (243)
T d1q7ba_           6 IALVTGASRGIGRAIAETLAARGA--KVIGTATSENGAQAISDYLGANGKG-LMLNV---TDPASIESVLEKIRAEFGEV   79 (243)
T ss_dssp             EEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGGEEE-EECCT---TCHHHHHHHHHHHHHHTCSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhCCCCcE-EEEEe---cCHHHhhhhhhhhhcccCCc
Confidence            4556698 8999999999999996  9999999998888665555321110 00111   111           224578


Q ss_pred             CEEEEecCCCcCc---cccHHH---HHHh----hHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          107 DLCIVTAGARQIA---GESRLN---LLQR----NLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       107 DiVIi~~g~~~~~---g~~r~~---~~~~----n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |++|..+|.....   ..+..+   .+.-    .....+.+.+.|.+.. .+.||++|
T Consensus        80 DilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~II~is  136 (243)
T d1q7ba_          80 DILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKR-HGRIITIG  136 (243)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             ceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcC-CCEeeeec
Confidence            9999998764322   112211   1222    3556777777777643 56677776

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.79  E-value=0.005  Score=52.61  Aligned_cols=36  Identities=17%  Similarity=0.368  Sum_probs=31.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      |+||+|||||..|.++|..|.+.|+ ..|+++|..++
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi-~~V~V~Er~~~   36 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGI-GKVTLLESSSE   36 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CeEEEEeCCCC
Confidence            5899999999999999999999985 48999998653

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.79  E-value=0.048  Score=44.04  Aligned_cols=72  Identities=21%  Similarity=0.276  Sum_probs=48.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc-C-C-c-c------ccCC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS-V-D-Y-A------VTAG  105 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t-~-~-~-~------al~~  105 (350)
                      +..+|+|+|+|.+|...+..+...+. ..|+..|.+++|++ .+.++--       ..+... . + . +      .-.+
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga-~~Vi~~d~~~~r~~-~a~~~Ga-------~~~i~~~~~~~~~~~~~~~~~~~G   98 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGA-SRIIAIDINGEKFP-KAKALGA-------TDCLNPRELDKPVQDVITELTAGG   98 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHH-HHHHTTC-------SEEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCC-ceeeeeccchHHHH-HHHHhCC-------CcccCCccchhhhhhhHhhhhcCC
Confidence            34689999999999999888887774 58999999999876 2333321       111111 1 1 0 1      1267


Q ss_pred             CCEEEEecCCC
Q 018760          106 SDLCIVTAGAR  116 (350)
Q Consensus       106 aDiVIi~~g~~  116 (350)
                      +|+||.++|.+
T Consensus        99 ~d~vie~~G~~  109 (174)
T d1e3ia2          99 VDYSLDCAGTA  109 (174)
T ss_dssp             BSEEEESSCCH
T ss_pred             CcEEEEecccc
Confidence            99999998754

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.77  E-value=0.0034  Score=53.65  Aligned_cols=33  Identities=24%  Similarity=0.532  Sum_probs=30.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      |||+|||||..|.+.|+.|.+.|+  +|+|+|.++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~--~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGT--DAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            799999999999999999999996  899999854

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.72  E-value=0.0082  Score=47.42  Aligned_cols=71  Identities=18%  Similarity=0.247  Sum_probs=44.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcC-CCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEec
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQD-FVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTA  113 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~-~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~  113 (350)
                      ++|||+|+|| |.+|.-+...|.+.+ ...+|.++--+...-+    .+..   ......+. ..+.+.+.++|+++++.
T Consensus         1 q~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk----~i~~---~~~~~~~~-~~~~~~~~~~d~vf~a~   72 (144)
T d2hjsa1           1 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQ----RMGF---AESSLRVG-DVDSFDFSSVGLAFFAA   72 (144)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTC----EEEE---TTEEEECE-EGGGCCGGGCSEEEECS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCc----ceee---ccccchhc-cchhhhhccceEEEecC
Confidence            4689999999 999999999887654 3458888765432111    0110   01112222 22335688999999986


Q ss_pred             C
Q 018760          114 G  114 (350)
Q Consensus       114 g  114 (350)
                      +
T Consensus        73 p   73 (144)
T d2hjsa1          73 A   73 (144)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.029  Score=50.40  Aligned_cols=110  Identities=11%  Similarity=0.127  Sum_probs=61.5

Q ss_pred             eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc-----cchHHHHHHHHHHh-hcCCCceEEEc--CCcc----ccC-
Q 018760           39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA-----DKLRGEMLDLQHAA-AFLPRTKILAS--VDYA----VTA-  104 (350)
Q Consensus        39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~-----~~l~~~~~dl~~~~-~~~~~~~v~~t--~~~~----al~-  104 (350)
                      ++.|+|| |.+|+.++..|++.|.  +|+.+|+..     ++++.    +.... ......++...  +|.+    .++ 
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~   76 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDH----IYQDPHTCNPKFHLHYGDLSDTSNLTRILRE   76 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEECC-------------------------CCEEECCCCSSCHHHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHH----HHhhhhhcCCCeEEEEeecCCHHHHHHHHhc
Confidence            3448898 9999999999999985  999999843     22221    11111 01112222211  1322    234 


Q ss_pred             -CCCEEEEecCCCcC--ccccHHHHHHhhHHHHHHHHhhhhccC--CCeEEEEEc
Q 018760          105 -GSDLCIVTAGARQI--AGESRLNLLQRNLSLFKAIIPPLVKYS--PDCILLIVA  154 (350)
Q Consensus       105 -~aDiVIi~~g~~~~--~g~~r~~~~~~n~~i~~~i~~~i~~~~--p~a~viv~t  154 (350)
                       +.|+|+.+++....  +..........|+.-...+.+.+++++  +...+|.+|
T Consensus        77 ~~~d~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~S  131 (357)
T d1db3a_          77 VQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAS  131 (357)
T ss_dssp             HCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred             cCCCEEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence             44999999875432  223344556668877888888877764  233455554

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.69  E-value=0.026  Score=47.65  Aligned_cols=117  Identities=22%  Similarity=0.328  Sum_probs=72.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc----c----chHHHHHHHHHHhhcCCCceEEEcCCc-cccCCC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA----D----KLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGS  106 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~----~----~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~a  106 (350)
                      +..||++.|||+.|..++..|...+. ++++++|++-    +    .+.....++.+..   ...+.  ..+. +.++++
T Consensus        25 ~d~riv~~GAGsAg~gia~~l~~~~~-~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~---~~~~~--~~~l~~~l~g~   98 (222)
T d1vl6a1          25 EEVKVVVNGIGAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARIT---NPERL--SGDLETALEGA   98 (222)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHTS---CTTCC--CSCHHHHHTTC
T ss_pred             hhcEEEEEChHHHHHHHHHHHHHhcc-cceEeecceeEEEcCcccccccHHHHHHHhhh---cchhh--hcchHhhccCc
Confidence            44699999999999999999988875 7999999851    1    2222222333221   11111  1233 678999


Q ss_pred             CEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchH-HHHHHHHhCCCCCcEeeecC
Q 018760          107 DLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDIL-TYVAWKLSGLPSNRVIGSGT  180 (350)
Q Consensus       107 DiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~-~~~~~~~sg~~~~rviG~g~  180 (350)
                      ++++-+..    +|.-+.              +.|.+.++..+|+-.|||..-. +...|.. |   .-+|+.|.
T Consensus        99 ~~~~g~~~----~~~~~~--------------e~m~~~~~rPIIFpLSNPt~~~e~~~a~~~-G---~ai~AtGs  151 (222)
T d1vl6a1          99 DFFIGVSR----GNILKP--------------EWIKKMSRKPVIFALANPVPEIDPELAREA-G---AFIVATGR  151 (222)
T ss_dssp             SEEEECSC----SSCSCH--------------HHHTTSCSSCEEEECCSSSCSSCHHHHHHT-T---CSEEEESC
T ss_pred             ceeccccc----cccccH--------------HHHhhcCCCCEEEecCCCccchhhhhheec-c---ceEEecCC
Confidence            98776642    222111              2345567888999999997654 4444432 3   35777765

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.63  E-value=0.017  Score=49.90  Aligned_cols=76  Identities=12%  Similarity=0.153  Sum_probs=49.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHH-HHHHHHHhhcCCCceEEEc--CC---c-cccCCCC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGE-MLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSD  107 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~-~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aD  107 (350)
                      +++||.|+|| |.+|++++..|+..|.  +|+.+++++...... ...+.....  ...++...  +|   . +.+++++
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~--~~v~~v~~d~~d~~~~~~~~~~~~   77 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFKQ--LGAKLIEASLDDHQRLVDALKQVD   77 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHHT--TTCEEECCCSSCHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCcccchhHHHHHhhhcc--CCcEEEEeecccchhhhhhccCcc
Confidence            5679999998 9999999999999984  899998876433221 112221111  23344322  12   1 4688999


Q ss_pred             EEEEecCC
Q 018760          108 LCIVTAGA  115 (350)
Q Consensus       108 iVIi~~g~  115 (350)
                      .++.+++.
T Consensus        78 ~~~~~~~~   85 (312)
T d1qyda_          78 VVISALAG   85 (312)
T ss_dssp             EEEECCCC
T ss_pred             hhhhhhhh
Confidence            99988653

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.56  E-value=0.023  Score=45.86  Aligned_cols=72  Identities=18%  Similarity=0.246  Sum_probs=47.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC--c-cc---c--CCCC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD--Y-AV---T--AGSD  107 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~--~-~a---l--~~aD  107 (350)
                      +..+|.|+|+|.+|...+..+...+. ..|+..|.+++|++ .+.++-       -..+....+  . +.   +  .++|
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~-~a~~~G-------a~~~i~~~~~~~~~~i~~~t~gg~D   98 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGA-SIIIAVDIVESRLE-LAKQLG-------ATHVINSKTQDPVAAIKEITDGGVN   98 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTC-SEEEEEESCHHHHH-HHHHHT-------CSEEEETTTSCHHHHHHHHTTSCEE
T ss_pred             CCCEEEEeCCCHHHhhhhhccccccc-ceeeeeccHHHHHH-HHHHcC-------CeEEEeCCCcCHHHHHHHHcCCCCc
Confidence            44689999999999999988877775 46788899998776 233332       112222222  1 22   2  2489


Q ss_pred             EEEEecCCC
Q 018760          108 LCIVTAGAR  116 (350)
Q Consensus       108 iVIi~~g~~  116 (350)
                      +||.++|.+
T Consensus        99 ~vid~~G~~  107 (174)
T d1f8fa2          99 FALESTGSP  107 (174)
T ss_dssp             EEEECSCCH
T ss_pred             EEEEcCCcH
Confidence            999998743

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.53  E-value=0.013  Score=47.88  Aligned_cols=77  Identities=12%  Similarity=0.204  Sum_probs=42.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEE-eCCccchHHH-HHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALV-DAKADKLRGE-MLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~-D~~~~~l~~~-~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      |+||+|+|| |.+|.-+...|...+-+ +|.-+ -...++..+. ..+............+....+. ....++|+|+.+
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~-ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~a   79 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHM-TITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLA   79 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEEC
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCC-ceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecc
Confidence            579999999 99999999999988643 44332 2221111111 1111111101112233333343 346899999999


Q ss_pred             cC
Q 018760          113 AG  114 (350)
Q Consensus       113 ~g  114 (350)
                      .+
T Consensus        80 lp   81 (179)
T d2g17a1          80 TA   81 (179)
T ss_dssp             SC
T ss_pred             cc
Confidence            53

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.51  E-value=0.01  Score=44.74  Aligned_cols=38  Identities=13%  Similarity=0.355  Sum_probs=32.9

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccc
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADK   74 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~   74 (350)
                      ..+.||+|||+|.+|.-+|..|...|.  +|+|++..+.-
T Consensus        20 ~~p~~v~IiGgG~ig~E~A~~l~~~G~--~Vtlve~~~~i   57 (117)
T d1ebda2          20 EVPKSLVVIGGGYIGIELGTAYANFGT--KVTILEGAGEI   57 (117)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTC--EEEEEESSSSS
T ss_pred             hcCCeEEEECCCccceeeeeeeccccc--EEEEEEeccee
Confidence            345799999999999999999999985  99999987653

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.48  E-value=0.074  Score=46.96  Aligned_cols=116  Identities=14%  Similarity=0.175  Sum_probs=70.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc-chHHHHHHHHHHhh--cCCCceEEEcC--Cc----cccCC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD-KLRGEMLDLQHAAA--FLPRTKILASV--DY----AVTAG  105 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~-~l~~~~~dl~~~~~--~~~~~~v~~t~--~~----~al~~  105 (350)
                      +++||.|+|| |.+|+.++..|.+.|.  +|..+|+... ... ....+.....  .....++...+  |.    ....+
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~   91 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQR-NLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAG   91 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHH-HHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTT
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchh-hHHHHHHhhhhcccCCeeEEeecccccccccccccc
Confidence            4568999999 9999999999999996  9999997322 111 1111211110  01233443221  21    24577


Q ss_pred             CCEEEEecCCCcC--ccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          106 SDLCIVTAGARQI--AGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       106 aDiVIi~~g~~~~--~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      .|.|+.++....-  ...........|+.-...+.+.+.+.....+|..-|
T Consensus        92 ~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS  142 (341)
T d1sb8a_          92 VDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAAS  142 (341)
T ss_dssp             CSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             ccccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEccc
Confidence            8888877643321  123345567778888888888888876555443333

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=95.47  E-value=0.07  Score=45.73  Aligned_cols=147  Identities=18%  Similarity=0.175  Sum_probs=83.6

Q ss_pred             eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc-cchHHHHHHHHHHhhcCCCceEEEc--CCc-----------ccc
Q 018760           39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA-DKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------AVT  103 (350)
Q Consensus        39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~-~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~al  103 (350)
                      .+.|.|| +.+|..+|..|++.|.  +|++.|+++ +.++....++.....  ........  +|.           +.+
T Consensus         6 ~alITGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           6 VAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQHG--VKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHHT--SCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            4556688 8899999999999996  999999974 556655555543321  11111111  111           123


Q ss_pred             CCCCEEEEecCCCcCc---cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEcCCc------chHHHHHHHH
Q 018760          104 AGSDLCIVTAGARQIA---GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVANPV------DILTYVAWKL  167 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~~---g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNP~------~~~~~~~~~~  167 (350)
                      ..-|++|..+|.....   ..+..+   .+.-|    ....+...+.|.+.. .+.||+++-..      +...|.+.|.
T Consensus        82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~~~~~~~~~Y~asKa  160 (260)
T d1x1ta1          82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIASAHGLVASANKSAYVAAKH  160 (260)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred             CCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcC-CceEeecccccceeccCCcchhhhhhh
Confidence            5689999998864321   112221   22223    556677777777654 46677765332      2234444443


Q ss_pred             hCCCCCcEeeecCCccHHHHHHHHHHHcCCCCcceEEEEE
Q 018760          168 SGLPSNRVIGSGTNLDSSRFRFLLADHLDVNAQDVQAYIV  207 (350)
Q Consensus       168 sg~~~~rviG~g~~ld~~r~~~~la~~l~v~p~~v~~~v~  207 (350)
                               |+      ..+-+.+|..+.  +..|++-.+
T Consensus       161 ---------al------~~lt~~lA~el~--~~gIrVN~I  183 (260)
T d1x1ta1         161 ---------GV------VGFTKVTALETA--GQGITANAI  183 (260)
T ss_dssp             ---------HH------HHHHHHHHHHHT--TTTEEEEEE
T ss_pred             ---------hH------HHhHHHHHHHhc--hhCcEEEEE
Confidence                     12      234556677663  566766544

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.45  E-value=0.028  Score=42.62  Aligned_cols=35  Identities=20%  Similarity=0.421  Sum_probs=31.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      +.+|+|||+|.+|.-+|..|...+.  +|+|++..+.
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~--~Vtlv~~~~~   66 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGY--HVKLIHRGAM   66 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTC--EEEEECSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccc--eEEEEecccc
Confidence            3589999999999999999999985  9999998664

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=0.0064  Score=52.20  Aligned_cols=36  Identities=22%  Similarity=0.509  Sum_probs=32.5

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      +..||+|+|+|.+|+.++..|+..|+ ++|+|+|-|.
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gv-g~i~lvD~D~   64 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGV-GNLTLLDFDT   64 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCC-CeEEEECCcc
Confidence            34699999999999999999999997 7999999765

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=95.41  E-value=0.0058  Score=50.33  Aligned_cols=75  Identities=16%  Similarity=0.259  Sum_probs=44.2

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhc---CCCceEEEcCCccccCCCCEE
Q 018760           34 TKRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF---LPRTKILASVDYAVTAGSDLC  109 (350)
Q Consensus        34 ~~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~---~~~~~v~~t~~~~al~~aDiV  109 (350)
                      ..+++||+|+|| |.+|.-+...|...+.+ ||..+--+.. . +.  .+.+....   ....... ..+.+..+++|+|
T Consensus         2 s~~kikVaIlGATGyvG~elirLL~~HP~~-ei~~l~S~~~-a-G~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dvv   75 (183)
T d2cvoa1           2 SGEEVRIAVLGASGYTGAEIVRLLANHPQF-RIKVMTADRK-A-GE--QFGSVFPHLITQDLPNLV-AVKDADFSNVDAV   75 (183)
T ss_dssp             CSSCEEEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECSTT-T-TS--CHHHHCGGGTTSCCCCCB-CGGGCCGGGCSEE
T ss_pred             CCCccEEEEECcccHHHHHHHHHHHhCCCc-eEEEEecccc-C-CC--ccccccccccccccccch-hhhhhhhccccee
Confidence            346789999999 99999999999887644 6666543221 1 11  12222111   1111111 1122457899999


Q ss_pred             EEecC
Q 018760          110 IVTAG  114 (350)
Q Consensus       110 Ii~~g  114 (350)
                      +.+.+
T Consensus        76 f~alp   80 (183)
T d2cvoa1          76 FCCLP   80 (183)
T ss_dssp             EECCS
T ss_pred             eeccc
Confidence            99863

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=95.37  E-value=0.02  Score=49.05  Aligned_cols=76  Identities=20%  Similarity=0.259  Sum_probs=49.3

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHH--HHHHHHHHhhcCCCceEEEc--CC----ccccCCCC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRG--EMLDLQHAAAFLPRTKILAS--VD----YAVTAGSD  107 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~--~~~dl~~~~~~~~~~~v~~t--~~----~~al~~aD  107 (350)
                      ++||.|+|| |.+|++++..|++.|.  +|+.++++......  ....+....  ....++...  .+    .+.++++|
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~   78 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFK--ASGANIVHGSIDDHASLVEAVKNVD   78 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHH--TTTCEEECCCTTCHHHHHHHHHTCS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEECCCccccchhHHHHHHhhc--cCCcEEEEeecccchhhhhhhhhce
Confidence            469999999 9999999999999985  99999987654321  111222211  122344321  11    14578999


Q ss_pred             EEEEecCCC
Q 018760          108 LCIVTAGAR  116 (350)
Q Consensus       108 iVIi~~g~~  116 (350)
                      .|+.+++..
T Consensus        79 ~vi~~~~~~   87 (307)
T d1qyca_          79 VVISTVGSL   87 (307)
T ss_dssp             EEEECCCGG
T ss_pred             eeeeccccc
Confidence            998876543

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.0052  Score=52.94  Aligned_cols=107  Identities=12%  Similarity=0.124  Sum_probs=64.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcC--C-------ccccCCCC
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV--D-------YAVTAGSD  107 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~--~-------~~al~~aD  107 (350)
                      +++.|.|| +.+|.+++..|+..|.  +|++.|+++++++..    .+..    ..+.....  +       .+.+..-|
T Consensus         7 K~alITGas~GIG~aia~~la~~G~--~Vi~~~r~~~~l~~~----~~~~----~~~~~~~d~~~~~~~~~~~~~~~~id   76 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREGA--KVIATDINESKLQEL----EKYP----GIQTRVLDVTKKKQIDQFANEVERLD   76 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHGGG----GGST----TEEEEECCTTCHHHHHHHHHHCSCCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHH----Hhcc----CCceeeeeccccccccccccccccce
Confidence            34556688 8999999999999995  999999998776532    2211    11222111  0       13356889


Q ss_pred             EEEEecCCCcCc---cccHHHH---H----HhhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          108 LCIVTAGARQIA---GESRLNL---L----QRNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       108 iVIi~~g~~~~~---g~~r~~~---~----~~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      ++|.++|.....   ..+..++   +    .......+.+.+.+.+. +.+-+++++.
T Consensus        77 ~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~-~~g~Ii~isS  133 (245)
T d2ag5a1          77 VLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ-KSGNIINMSS  133 (245)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             eEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccC-CCceeeeeec
Confidence            999998865321   1222221   1    22345666667766664 4555666653

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.33  E-value=0.0078  Score=51.19  Aligned_cols=33  Identities=24%  Similarity=0.528  Sum_probs=30.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      +||+|||||..|.+.|+.|++.|+  +|+++|.++
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~--~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGL--NVTVFEAEG   34 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSC--EEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            589999999999999999999997  999999754

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.30  E-value=0.025  Score=46.60  Aligned_cols=70  Identities=13%  Similarity=0.140  Sum_probs=45.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c-cccCCCCE
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y-AVTAGSDL  108 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~-~al~~aDi  108 (350)
                      .+.+|.|+|| |.+|++++..|++.+.--.++.+.+++++..    ++..      ..++...  ++   . ++++++|.
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~----~~~~------~~~~~~~d~~~~~~~~~~~~~~d~   71 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKE----KIGG------EADVFIGDITDADSINPAFQGIDA   71 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHH----HTTC------CTTEEECCTTSHHHHHHHHTTCSE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHH----hccC------CcEEEEeeecccccccccccccee
Confidence            3569999998 9999999999999885224555556654332    1111      1222211  12   2 46899999


Q ss_pred             EEEecCC
Q 018760          109 CIVTAGA  115 (350)
Q Consensus       109 VIi~~g~  115 (350)
                      ||.+++.
T Consensus        72 vi~~a~~   78 (252)
T d2q46a1          72 LVILTSA   78 (252)
T ss_dssp             EEECCCC
T ss_pred             eEEEEee
Confidence            9998754

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=0.086  Score=46.56  Aligned_cols=108  Identities=15%  Similarity=0.183  Sum_probs=63.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc------cchHHHHHHHHHHhhcCCCceEEEc--CCcc----ccC
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA------DKLRGEMLDLQHAAAFLPRTKILAS--VDYA----VTA  104 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~------~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al~  104 (350)
                      .||.|+|| |.+|++++..|++.|.  +|+.+|...      .........+.....  ...++...  +|.+    .+.
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~--~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~l~~~~~   78 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELTG--RSVEFEEMDILDQGALQRLFK   78 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHHT--CCCEEEECCTTCHHHHHHHHH
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCccccccccchHHHHHHHHhcC--CCcEEEEeecccccccccccc
Confidence            48999999 9999999999999985  899998421      111111122222211  23444422  2322    244


Q ss_pred             CCC--EEEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeE
Q 018760          105 GSD--LCIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCI  149 (350)
Q Consensus       105 ~aD--iVIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~  149 (350)
                      +.|  +|+-+++.+.-.  .....+.+..|+.-...+...+.+++..-+
T Consensus        79 ~~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~  127 (346)
T d1ek6a_          79 KYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNL  127 (346)
T ss_dssp             HCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             ccccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccc
Confidence            455  455455543211  112455567788888888888888765543

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.28  E-value=0.0089  Score=53.29  Aligned_cols=36  Identities=19%  Similarity=0.506  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      +++||+|||||-.|.+.|+.|++.|.  +|.|+|.+..
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~--~V~viEk~~~   36 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGH--QVHIIDQRDH   36 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTC--EEEEEESSSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC--CEEEEECCCC
Confidence            45799999999999999999999885  9999998653

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=95.22  E-value=0.024  Score=45.44  Aligned_cols=69  Identities=13%  Similarity=0.163  Sum_probs=51.7

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecC
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAG  114 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g  114 (350)
                      ...++++|+|.|.+|..+|..+...+.  .|..+++||-++      |+..+.   ..++.  +-.++++.+|+||.+.|
T Consensus        21 laGk~vvV~GYG~vGrG~A~~~rg~Ga--~V~V~E~DPi~a------lqA~md---Gf~v~--~~~~a~~~aDi~vTaTG   87 (163)
T d1v8ba1          21 ISGKIVVICGYGDVGKGCASSMKGLGA--RVYITEIDPICA------IQAVME---GFNVV--TLDEIVDKGDFFITCTG   87 (163)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHHTC--EEEEECSCHHHH------HHHHTT---TCEEC--CHHHHTTTCSEEEECCS
T ss_pred             ecCCEEEEecccccchhHHHHHHhCCC--EEEEEecCchhh------HHHHhc---CCccC--chhHccccCcEEEEcCC
Confidence            345699999999999999999999985  999999999332      333321   33553  22378999999999977


Q ss_pred             CC
Q 018760          115 AR  116 (350)
Q Consensus       115 ~~  116 (350)
                      ..
T Consensus        88 n~   89 (163)
T d1v8ba1          88 NV   89 (163)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.21  E-value=0.087  Score=44.67  Aligned_cols=114  Identities=18%  Similarity=0.200  Sum_probs=70.3

Q ss_pred             eE-EEEcC-ChhHHHHHHHHHhcCCC-----CeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc---------
Q 018760           39 KI-SVIGT-GNVGMAIAQTILTQDFV-----EELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY---------  100 (350)
Q Consensus        39 KI-~IIGA-G~vG~~~a~~l~~~~~~-----~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~---------  100 (350)
                      +| .|.|| +.+|..+|..|++.|.-     ..|+++|+++++++....++.....   .......  +|.         
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~---~~~~~~~Dvt~~~~v~~~~~~   78 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA---LTDTITADISDMADVRRLTTH   78 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTC---EEEEEECCTTSHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCC---cEEEEEecCCCHHHHHHHHHH
Confidence            54 56698 79999999999998841     2489999999988877777664321   1111111  111         


Q ss_pred             --cccCCCCEEEEecCCCcC-c--cccHH---HHHHhh----HHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          101 --AVTAGSDLCIVTAGARQI-A--GESRL---NLLQRN----LSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       101 --~al~~aDiVIi~~g~~~~-~--g~~r~---~~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                        +.+..-|++|..+|.... +  ..+..   ..+.-|    ....+.+.+.|++.. .+.+|+++.-
T Consensus        79 ~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Ii~isS~  145 (240)
T d2bd0a1          79 IVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQH-SGHIFFITSV  145 (240)
T ss_dssp             HHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             HHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcC-CCceEEEech
Confidence              234578999999886432 1  11211   122223    556777788877643 5667777543

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.19  E-value=0.011  Score=48.62  Aligned_cols=35  Identities=17%  Similarity=0.273  Sum_probs=30.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      |||+|||+|.+|..+|..|...+.-.+|++++.++
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            79999999999999999998876545899999754

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.011  Score=50.80  Aligned_cols=37  Identities=30%  Similarity=0.588  Sum_probs=32.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      .++..||+|||||--|.+.|+.|.+.|+  +|++++.+.
T Consensus         2 ~~~~~kViVIGaG~aGL~aA~~L~~~G~--~V~VlEa~~   38 (449)
T d2dw4a2           2 TKKTGKVIIIGSGVSGLAAARQLQSFGM--DVTLLEARD   38 (449)
T ss_dssp             SSCCCEEEEECCBHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            4567799999999999999999999996  899998754

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=95.10  E-value=0.011  Score=50.94  Aligned_cols=97  Identities=15%  Similarity=0.222  Sum_probs=58.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccC--CCCEEEEec
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTA--GSDLCIVTA  113 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~--~aDiVIi~~  113 (350)
                      |||.|+|| |.+|++++..|...+   +++.+|.......+   |+.+..            .. +.++  +.|+||.++
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g---~~v~~~~~~~~~~~---Dl~~~~------------~~~~~i~~~~~D~Vih~A   62 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVG---NLIALDVHSKEFCG---DFSNPK------------GVAETVRKLRPDVIVNAA   62 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTS---EEEEECTTCSSSCC---CTTCHH------------HHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC---CEEEEECCCccccC---cCCCHH------------HHHHHHHHcCCCEEEEec
Confidence            89999999 999999999888877   66777775432211   111000            01 1222  469999998


Q ss_pred             CCCcC--ccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          114 GARQI--AGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       114 g~~~~--~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +....  ...........|......+.....+.+.  .++.+|
T Consensus        63 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~~~~s  103 (298)
T d1n2sa_          63 AHTAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYS  103 (298)
T ss_dssp             CCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEE
T ss_pred             ccccccccccCccccccccccccccchhhhhcccc--cccccc
Confidence            75421  1223344456677777777777776553  344443

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.063  Score=46.37  Aligned_cols=110  Identities=15%  Similarity=0.246  Sum_probs=69.1

Q ss_pred             CeEEEE-cC-ChhHHHHHHHHHhc-CCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------c
Q 018760           38 TKISVI-GT-GNVGMAIAQTILTQ-DFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------A  101 (350)
Q Consensus        38 ~KI~II-GA-G~vG~~~a~~l~~~-~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~  101 (350)
                      ++|+|| || +.+|..+|..|++. +  ..|++.++++++++..+.++....   ....+...  +|.           +
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g--~~Vi~~~r~~~~~~~~~~~l~~~~---~~~~~~~~Dvs~~~sv~~~~~~~~~   77 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFS--GDVVLTARDVTRGQAAVQQLQAEG---LSPRFHQLDIDDLQSIRALRDFLRK   77 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSS--SEEEEEESSHHHHHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcC---CcEEEEEEecCCHHHHHHHHHHHHH
Confidence            578755 87 89999999999875 5  389999999999988777776532   12232221  111           1


Q ss_pred             ccCCCCEEEEecCCCcC-c--cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          102 VTAGSDLCIVTAGARQI-A--GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       102 al~~aDiVIi~~g~~~~-~--g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      .+..-|++|..+|.... +  ..+..+   .+.-|    ....+.+.+.|++   .+.+|+++.
T Consensus        78 ~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~---~g~ivnisS  138 (275)
T d1wmaa1          78 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKP---QGRVVNVSS  138 (275)
T ss_dssp             HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEE---EEEEEEECC
T ss_pred             hcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCcccccc
Confidence            23578999999886432 1  112212   22223    4456666666654   466777764

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=95.06  E-value=0.025  Score=42.42  Aligned_cols=39  Identities=10%  Similarity=0.058  Sum_probs=29.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhc-CCCCeEEEEeCCccc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQ-DFVEELALVDAKADK   74 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~-~~~~ev~L~D~~~~~   74 (350)
                      .+.||+|||+|.+|.-+|..|... ....+|.+++..+.-
T Consensus        17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i   56 (117)
T d1feca2          17 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI   56 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             cCCeEEEECCChHHHHHHHHhHhhcccccccceecccccc
Confidence            356999999999999999766654 223599999986643

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.02  E-value=0.0099  Score=49.14  Aligned_cols=33  Identities=21%  Similarity=0.512  Sum_probs=29.8

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      ||+|||||..|.+.|+.|.+.|+ .+|+++|.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~-~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGI-TDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTC-CCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCC-CcEEEEECCC
Confidence            89999999999999999999985 4799999864

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=95.00  E-value=0.21  Score=42.54  Aligned_cols=126  Identities=13%  Similarity=0.143  Sum_probs=72.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcC---Cc-----------
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV---DY-----------  100 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~---~~-----------  100 (350)
                      +.+.|.|+|+ +.+|..+|..|+..|.  ++++++++.++++.. .++...... .........   +.           
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~--~vii~~r~~~~~~~~-~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~   79 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTAL-AELKAINPK-VNITFHTYDVTVPVAESKKLLKKIF   79 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHH-HHHHHHCTT-SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEECCcccHHHH-HHHHhhCCC-CCEEEEEeecCCCHHHHHHHHHHHH
Confidence            4456888898 7899999999999995  788877666665533 333322210 011111111   11           


Q ss_pred             cccCCCCEEEEecCCCcCccccHHHHHHhh----HHHHHHHHhhhhcc--CCCeEEEEEcC-----C-cchHHHHHHHH
Q 018760          101 AVTAGSDLCIVTAGARQIAGESRLNLLQRN----LSLFKAIIPPLVKY--SPDCILLIVAN-----P-VDILTYVAWKL  167 (350)
Q Consensus       101 ~al~~aDiVIi~~g~~~~~g~~r~~~~~~n----~~i~~~i~~~i~~~--~p~a~viv~tN-----P-~~~~~~~~~~~  167 (350)
                      +.+...|++|..+|......-  ...+.-|    ....+.+.+.|.+.  .+.+.||+++-     | .+...|.+.|.
T Consensus        80 ~~~g~iDilvnnAG~~~~~~~--~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~~~~~~Y~asKa  156 (254)
T d1sbya1          80 DQLKTVDILINGAGILDDHQI--ERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKA  156 (254)
T ss_dssp             HHHSCCCEEEECCCCCCTTCH--HHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTSHHHHHHHH
T ss_pred             HHcCCCCEEEeCCCCCCHHHH--HHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCCCCCHHHHHHHH
Confidence            124678999999986543221  1222223    44667777777654  35677777742     2 22345555554

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.95  E-value=0.012  Score=49.25  Aligned_cols=35  Identities=23%  Similarity=0.441  Sum_probs=30.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      .||+|||||..|.+.|..|...+...+|+++|..+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            49999999999999999998876545999999875

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.86  E-value=0.012  Score=50.52  Aligned_cols=33  Identities=30%  Similarity=0.399  Sum_probs=29.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      -.|+|||||-+|.++|+.|++.|.  +|+++|.++
T Consensus         5 ~DvvIIGaGi~Gls~A~~La~~G~--~V~vlE~~~   37 (276)
T d1ryia1           5 YEAVVIGGGIIGSAIAYYLAKENK--NTALFESGT   37 (276)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            359999999999999999999995  999999864

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=94.85  E-value=0.071  Score=47.24  Aligned_cols=107  Identities=14%  Similarity=0.188  Sum_probs=63.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc-cchHHHHHHHHHHhhcCCCceEEEc--CCc----cccCCCC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA-DKLRGEMLDLQHAAAFLPRTKILAS--VDY----AVTAGSD  107 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~-~~l~~~~~dl~~~~~~~~~~~v~~t--~~~----~al~~aD  107 (350)
                      ++|||.|+|| |.+|++++..|++.+.--.++.+|.-. .....   .+....  .........  +|.    +.++++|
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~---~~~~~~--~~~i~~~~~Di~d~~~~~~~~~~~~   75 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKA---NLEAIL--GDRVELVVGDIADAELVDKLAAKAD   75 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGG---GTGGGC--SSSEEEEECCTTCHHHHHHHHTTCS
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHH---HHHHhh--cCCeEEEEccCCCHHHHHHHHhhhh
Confidence            4789999998 999999999999988523456666421 11000   011111  122333322  121    3568899


Q ss_pred             EEEEecCCCcCcc--ccHHHHHHhhHHHHHHHHhhhhccCCC
Q 018760          108 LCIVTAGARQIAG--ESRLNLLQRNLSLFKAIIPPLVKYSPD  147 (350)
Q Consensus       108 iVIi~~g~~~~~g--~~r~~~~~~n~~i~~~i~~~i~~~~p~  147 (350)
                      .|+..+.......  ....+.+..|+.-...+.....+.+..
T Consensus        76 ~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k  117 (346)
T d1oc2a_          76 AIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIR  117 (346)
T ss_dssp             EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCE
T ss_pred             hhhhhhhcccccchhhCcccceeeehHhHHhhhhhhcccccc
Confidence            9888875443221  122455667888888888877777653

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.84  E-value=0.018  Score=43.91  Aligned_cols=36  Identities=14%  Similarity=0.374  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      .+.|++|||+|.+|.-+|..|...|.  +|.+++..+.
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~lG~--~Vtii~~~~~   57 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSRLGS--KVTVVEFQPQ   57 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSSS
T ss_pred             CCCeEEEECCCchHHHHHHHHHhhCc--ceeEEEeccc
Confidence            45799999999999999999999885  9999998664

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.84  E-value=0.011  Score=49.27  Aligned_cols=33  Identities=21%  Similarity=0.372  Sum_probs=27.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCC----CCeEEEEeC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDF----VEELALVDA   70 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~----~~ev~L~D~   70 (350)
                      |||+|||||-+|.+.|+.|++++.    +.++.+++.
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~   37 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYAD   37 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEES
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEeeeeeccc
Confidence            799999999999999999999874    346777764

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=94.82  E-value=0.031  Score=47.91  Aligned_cols=113  Identities=17%  Similarity=0.135  Sum_probs=66.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC--------ccccCCCC
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD--------YAVTAGSD  107 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~--------~~al~~aD  107 (350)
                      .+.+.|.|| +.+|..++..|++.|.  +|++.|+++++.+ ....+... .+  ..++.-..+        .+.+..-|
T Consensus         5 GK~alITGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~-~~~~~~~~-~~--~~Dv~~~~~v~~~~~~~~~~~G~iD   78 (248)
T d2d1ya1           5 GKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKE-VAEAIGGA-FF--QVDLEDERERVRFVEEAAYALGRVD   78 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHH-HHHHHTCE-EE--ECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHH-HHHHcCCe-EE--EEeCCCHHHHHHHHHHHHHhcCCCC
Confidence            346778898 8999999999999995  9999999987554 22222110 01  011110000        12346789


Q ss_pred             EEEEecCCCcC-c--cccHHH---HHHh----hHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          108 LCIVTAGARQI-A--GESRLN---LLQR----NLSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       108 iVIi~~g~~~~-~--g~~r~~---~~~~----n~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      ++|..+|.... +  ..+..+   .+.-    ...+.+...+.|.+.. .+.||+++-.
T Consensus        79 iLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~Ii~isS~  136 (248)
T d2d1ya1          79 VLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVG-GGAIVNVASV  136 (248)
T ss_dssp             EEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEECCG
T ss_pred             eEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccc-cccccccccc
Confidence            99999886432 1  112221   1222    3456777777777643 5667777533

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=94.81  E-value=0.012  Score=51.46  Aligned_cols=33  Identities=27%  Similarity=0.644  Sum_probs=29.5

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      +|+|||||-+|.++|+.|++.|. .+|+|+|.++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~-~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGW-NNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC-CCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCC-CcEEEEeCCC
Confidence            79999999999999999999885 3799999864

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.80  E-value=0.016  Score=45.95  Aligned_cols=35  Identities=29%  Similarity=0.417  Sum_probs=30.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      +||+|||+|.+|..+|..|...+.-.+|+|+|.++
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            59999999999999999998877544899999876

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.77  E-value=0.011  Score=51.26  Aligned_cols=34  Identities=18%  Similarity=0.490  Sum_probs=31.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      .||+|||||.+|.++|..|...|+  ++.++|..++
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~--~v~vlE~~~~   36 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGI--DNVILERQTP   36 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTC--CEEEECSSCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC--CEEEEeCCCC
Confidence            379999999999999999999997  8999998753

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.75  E-value=0.083  Score=45.95  Aligned_cols=112  Identities=12%  Similarity=0.089  Sum_probs=67.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcccc------CCCCE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAVT------AGSDL  108 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~al------~~aDi  108 (350)
                      +||.|+|| |.+|++++..|+++|.  +|+.+|+....-.  ...+.+... .++.++...  .|.+.+      ...++
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~--~V~~~~r~~~~~~--~~~l~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~~~   75 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDT--RWRLRELGI-EGDIQYEDGDMADACSVQRAVIKAQPQE   75 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCC--CHHHHHTTC-GGGEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCccc--HHHHHHhcc-cCCcEEEEccccChHHhhhhhccccccc
Confidence            48999999 9999999999999985  9999998653211  112332211 112233321  122111      24566


Q ss_pred             EEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          109 CIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       109 VIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ++.++......  .......+..|+.-...+.+.+.++.+...++..|
T Consensus        76 ~~~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~S  123 (321)
T d1rpna_          76 VYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQAS  123 (321)
T ss_dssp             EEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             cccccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCccccccc
Confidence            66665432211  12345566778888888888888887776666554

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.67  E-value=0.01  Score=49.63  Aligned_cols=37  Identities=16%  Similarity=0.269  Sum_probs=31.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCC-----CCeEEEEeCCc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDF-----VEELALVDAKA   72 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~-----~~ev~L~D~~~   72 (350)
                      ++.||+|||||..|.+.|+.|++.|.     ..+|.++|..+
T Consensus         1 rp~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           1 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CCcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            45799999999999999999998863     13799999865

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.58  E-value=0.026  Score=42.84  Aligned_cols=36  Identities=22%  Similarity=0.511  Sum_probs=32.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADK   74 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~   74 (350)
                      ..+|+|||+|.+|.-+|..|...+.  +|+|++..+.-
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~--~Vtli~~~~~~   65 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGV--HVSLVETQPRL   65 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESSSST
T ss_pred             CCeEEEECcchhHHHHHHHhhcccc--eEEEEeecccc
Confidence            4689999999999999999999985  99999987643

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.54  E-value=0.025  Score=47.61  Aligned_cols=38  Identities=21%  Similarity=0.486  Sum_probs=33.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      .....||+|||||..|.+.|..|.+.|+  +++|+|.+.+
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~--~v~l~E~~~~   83 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGY--TVHLTDTAEK   83 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSSS
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhcc--ceeeEeeccc
Confidence            4566799999999999999999999996  9999998653

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.49  E-value=0.0083  Score=49.13  Aligned_cols=72  Identities=14%  Similarity=0.300  Sum_probs=41.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhc-CCCceEEEcCCcc-ccCCCCEEEEec
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAF-LPRTKILASVDYA-VTAGSDLCIVTA  113 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~-~~~~~v~~t~~~~-al~~aDiVIi~~  113 (350)
                      |+||+|+|| |.+|.-+...|...+.+ ||..+--+.  ..+.  .+.+..+. .....+. ..+.+ ..+++|+|+.+.
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~-ei~~l~s~~--~aG~--~i~~~~p~~~~~~~~~-~~~~~~~~~~~dvvf~a~   74 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRT--YAGK--KLEEIFPSTLENSILS-EFDPEKVSKNCDVLFTAL   74 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECST--TTTS--BHHHHCGGGCCCCBCB-CCCHHHHHHHCSEEEECC
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCc-eEEEeeccc--cCCC--cccccCchhhcccccc-ccCHhHhccccceEEEcc
Confidence            579999999 99999999988887643 554442221  1121  12222111 1112222 22443 346899999986


Q ss_pred             C
Q 018760          114 G  114 (350)
Q Consensus       114 g  114 (350)
                      +
T Consensus        75 p   75 (176)
T d1vkna1          75 P   75 (176)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=94.39  E-value=0.033  Score=48.45  Aligned_cols=110  Identities=18%  Similarity=0.252  Sum_probs=66.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC-----------cc
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD-----------YA  101 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~-----------~~  101 (350)
                      +.+.+.|.|| +.+|.++|..|++.|.  +|++.|+++++++....++....      .....  ++           .+
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~------~~~~~Dv~~~~~~~~~~~~~~~   75 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGA--KVAVLDKSAERLAELETDHGDNV------LGIVGDVRSLEDQKQAASRCVA   75 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGGGE------EEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCCe------eEEecccccHHHHHHHHHHHHH
Confidence            3456778898 8999999999999996  99999999988875554443211      11111  11           12


Q ss_pred             ccCCCCEEEEecCCCcCc-------ccc-H---HHHHHh----hHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          102 VTAGSDLCIVTAGARQIA-------GES-R---LNLLQR----NLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       102 al~~aDiVIi~~g~~~~~-------g~~-r---~~~~~~----n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      .+...|++|..+|.....       .+. .   ...+.-    .....+.+.+.|.+.. ..+|++.|
T Consensus        76 ~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g~iI~i~S  142 (276)
T d1bdba_          76 RFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-GNVIFTIS  142 (276)
T ss_dssp             HHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECC
T ss_pred             HhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-CCceeeee
Confidence            345789999998753211       111 1   111222    3456677777776543 44444444

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=94.36  E-value=0.02  Score=48.68  Aligned_cols=73  Identities=8%  Similarity=0.031  Sum_probs=42.6

Q ss_pred             CCCCCeEEEEcCChhH----HHHHHHHHhcCCCCeEE-EEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-c--CC
Q 018760           34 TKRHTKISVIGTGNVG----MAIAQTILTQDFVEELA-LVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-T--AG  105 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG----~~~a~~l~~~~~~~ev~-L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l--~~  105 (350)
                      ..+++||+|||+|.+|    ......+.....--+|+ ++|++.++++.    +...... ...+.  ..++++ +  .+
T Consensus        13 ~~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~----~~~~~~~-~~~~~--~~~~~~l~~~~~   85 (237)
T d2nvwa1          13 SSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQ----TIEQLQL-KHATG--FDSLESFAQYKD   85 (237)
T ss_dssp             GGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHH----HHHHTTC-TTCEE--ESCHHHHHHCTT
T ss_pred             CCCCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHH----HHHhccc-cccee--ecchhhcccccc
Confidence            4677999999998743    34444555432212555 89999877653    2222211 12233  346643 3  46


Q ss_pred             CCEEEEec
Q 018760          106 SDLCIVTA  113 (350)
Q Consensus       106 aDiVIi~~  113 (350)
                      .|+|+++.
T Consensus        86 iD~V~i~t   93 (237)
T d2nvwa1          86 IDMIVVSV   93 (237)
T ss_dssp             CSEEEECS
T ss_pred             cceeeccC
Confidence            78999985

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=94.34  E-value=0.086  Score=42.15  Aligned_cols=40  Identities=23%  Similarity=0.356  Sum_probs=33.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      +..+|.|+|+|.+|...+..+...+. ..|+..|++++|++
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~-~~Vi~~~~~~~k~~   67 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGA-ARIIGVDINKDKFA   67 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCC-ceEEeecCcHHHHH
Confidence            44689999999999998888887764 58999999999886

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.30  E-value=0.033  Score=42.30  Aligned_cols=36  Identities=19%  Similarity=0.416  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      +..+|+|||+|.+|.-+|..|.+.|.  +|++++..+.
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~--~Vtlie~~~~   64 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGK--KVTVIDILDR   64 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHhhccce--EEEEEEecCc
Confidence            44699999999999999999999985  9999998653

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.027  Score=48.78  Aligned_cols=113  Identities=16%  Similarity=0.233  Sum_probs=67.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcC--Cc-----------c
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV--DY-----------A  101 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~--~~-----------~  101 (350)
                      +.+++.|+|| +.+|.++|..|++.|.  +|++.|+++++++....++.....  .........  +.           +
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~--~Vil~~r~~~~l~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~   88 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLELGA--ASAHYIAGTMEDMTFAEQFVAQAGK   88 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTC--SEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhhhhc--ccchhhhhhhhhHHHHHHHHHHHHH
Confidence            3457888899 7899999999999995  999999999999876666654331  111111111  10           1


Q ss_pred             ccCCCCEEEEecCCCcC-c--cccHH---HHHHhh----HHHHHHHHhhhhccCCCeEEEEEc
Q 018760          102 VTAGSDLCIVTAGARQI-A--GESRL---NLLQRN----LSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       102 al~~aDiVIi~~g~~~~-~--g~~r~---~~~~~n----~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      .....|++++.+|.... +  ..+..   ..+.-|    ....+.+.+.|++.  ++.+|+++
T Consensus        89 ~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~--~G~ii~is  149 (269)
T d1xu9a_          89 LMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS--NGSIVVVS  149 (269)
T ss_dssp             HHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEE
T ss_pred             HhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc--CCcceEec
Confidence            23467899888765321 1  11211   122223    44566666677643  35555654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.26  E-value=0.035  Score=41.91  Aligned_cols=37  Identities=22%  Similarity=0.402  Sum_probs=32.1

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      ..+.||+|||+|.+|.-+|..|...|.  +|.++...+.
T Consensus        20 ~~p~~i~IiG~G~ig~E~A~~l~~~G~--~Vtiv~~~~~   56 (119)
T d3lada2          20 NVPGKLGVIGAGVIGLELGSVWARLGA--EVTVLEAMDK   56 (119)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTC--EEEEEESSSS
T ss_pred             cCCCeEEEECCChHHHHHHHHHHHcCC--ceEEEEeecc
Confidence            345799999999999999999999885  9999997653

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.25  E-value=0.091  Score=44.47  Aligned_cols=111  Identities=13%  Similarity=0.218  Sum_probs=63.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHH---HHHHHHhhcCCCceEEEcCCccccCCCCEEEEec
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEM---LDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTA  113 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~---~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~  113 (350)
                      +++.|.|| +.+|..++..|++.|.  +|++.|++++.++...   .|+.+....   .++. ..-.+.+..-|++|..+
T Consensus         8 K~~lITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~Dv~~~~~v---~~~~-~~~~~~~g~iDiLVnnA   81 (237)
T d1uzma1           8 RSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKGLFGVEVDVTDSDAV---DRAF-TAVEEHQGPVEVLVSNA   81 (237)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTCHHHH---HHHH-HHHHHHHSSCSEEEEEC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCcchhcCceEEEEecCCHHHH---HHHH-HHHHHhcCCceEEEeee
Confidence            46777798 7899999999999995  9999999887654210   111110000   0000 00013356789999998


Q ss_pred             CCCcC-c--cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          114 GARQI-A--GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       114 g~~~~-~--g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      |.... +  ..+..+   .+.-|    ....+.+.+.+.+.. .+.||+++-
T Consensus        82 G~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Iv~isS  132 (237)
T d1uzma1          82 GLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNK-FGRMIFIGS  132 (237)
T ss_dssp             SCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred             cccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccC-CCceEEEcc
Confidence            86432 1  122221   22223    445666777777654 455666653

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.22  E-value=0.045  Score=40.97  Aligned_cols=37  Identities=27%  Similarity=0.426  Sum_probs=31.6

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      ....||.|+|+|..|+-++.....-|+  +++.+|.+++
T Consensus         9 ~~~~kigIlGgGQL~rMla~aA~~lG~--~v~v~d~~~~   45 (111)
T d1kjqa2           9 PAATRVMLLGSGELGKEVAIECQRLGV--EVIAVDRYAD   45 (111)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHTTTC--EEEEEESSTT
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHCCC--EEEEEcCCCC
Confidence            344599999999999999988877786  9999999875

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.19  E-value=0.034  Score=42.27  Aligned_cols=35  Identities=14%  Similarity=0.179  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      .+.|++|||+|.+|.-+|..|...|.  +|+|+..++
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~--~Vtii~~~~   53 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGL--DVTVMVRSI   53 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCC--eEEEEEech
Confidence            45689999999999999999999885  899998753

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=94.18  E-value=0.087  Score=43.40  Aligned_cols=38  Identities=26%  Similarity=0.386  Sum_probs=31.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCC-CeEEEEeCCccch
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFV-EELALVDAKADKL   75 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~-~ev~L~D~~~~~l   75 (350)
                      +||.|||.|..|..++..+...++- -+.+.+|.|.+.|
T Consensus         1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L   39 (194)
T d1w5fa1           1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVL   39 (194)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHH
T ss_pred             CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHH
Confidence            6899999999999999998888763 3778888876544

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=94.12  E-value=0.27  Score=43.23  Aligned_cols=70  Identities=16%  Similarity=0.332  Sum_probs=47.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcC--C----c-cccCCCC
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV--D----Y-AVTAGSD  107 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~--~----~-~al~~aD  107 (350)
                      ++++|+|+|| |.+|++++..|+..|.  +|+.+-+++.....  ..+..    .+...+...+  |    . ++++++|
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~--~V~~l~R~~~~~~~--~~~~~----~~~v~~~~gD~~d~~~~~~~a~~~~~   73 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIA--EELQA----IPNVTLFQGPLLNNVPLMDTLFEGAH   73 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHH--HHHHT----STTEEEEESCCTTCHHHHHHHHTTCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC--eEEEEECCcchhhh--hhhcc----cCCCEEEEeeCCCcHHHHHHHhcCCc
Confidence            3568999999 9999999999999985  89999888766542  12221    1233444321  2    1 3578889


Q ss_pred             EEEEec
Q 018760          108 LCIVTA  113 (350)
Q Consensus       108 iVIi~~  113 (350)
                      .++...
T Consensus        74 ~~~~~~   79 (350)
T d1xgka_          74 LAFINT   79 (350)
T ss_dssp             EEEECC
T ss_pred             eEEeec
Confidence            888764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.10  E-value=0.048  Score=43.51  Aligned_cols=96  Identities=14%  Similarity=0.144  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcC-C--c--cccCCCCEE
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV-D--Y--AVTAGSDLC  109 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~-~--~--~al~~aDiV  109 (350)
                      ++..+|.|+|+|.+|...+..+...|.  +++.+|++++|++ .+.++-  .    . .+..+. +  .  ......|+|
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~--~vi~~~~~~~k~~-~a~~lG--a----~-~~i~~~~~~~~~~~~~~~~d~v   95 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAMGA--ETYVISRSSRKRE-DAMKMG--A----D-HYIATLEEGDWGEKYFDTFDLI   95 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHTC--EEEEEESSSTTHH-HHHHHT--C----S-EEEEGGGTSCHHHHSCSCEEEE
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhccc--cccccccchhHHH-HhhccC--C----c-EEeeccchHHHHHhhhcccceE
Confidence            345689999999999998887777785  8999999999886 233321  1    1 222221 2  1  224578999


Q ss_pred             EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      +.+++.+.....                ...+.-..|.+.+++++-|
T Consensus        96 i~~~~~~~~~~~----------------~~~~~~l~~~G~iv~~G~~  126 (168)
T d1piwa2          96 VVCASSLTDIDF----------------NIMPKAMKVGGRIVSISIP  126 (168)
T ss_dssp             EECCSCSTTCCT----------------TTGGGGEEEEEEEEECCCC
T ss_pred             EEEecCCccchH----------------HHHHHHhhccceEEEeccc
Confidence            998765432110                1123334578888888643

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.05  E-value=0.16  Score=43.16  Aligned_cols=109  Identities=11%  Similarity=0.082  Sum_probs=66.6

Q ss_pred             eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc--------cccCCCCEE
Q 018760           39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY--------AVTAGSDLC  109 (350)
Q Consensus        39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~--------~al~~aDiV  109 (350)
                      ...|.|| +.+|..+|..|++.|.  +|++.|++.++++... .+....   ...++....+.        +.+-.-|++
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga--~V~i~~r~~~~~~~~~-~~~~~~---~~~dv~~~~~~~~~~~~~~~~~G~iDiL   75 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELE-AFAETY---PQLKPMSEQEPAELIEAVTSAYGQVDVL   75 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHH-HHHHHC---TTSEECCCCSHHHHHHHHHHHHSCCCEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHH-hhhCcE---EEeccCCHHHHHHHHHHHHHHcCCCCEE
Confidence            3568898 7899999999999995  9999999988776432 222211   23344322221        234578999


Q ss_pred             EEecCCCc--Cc--cccHHHH---HHh----hHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          110 IVTAGARQ--IA--GESRLNL---LQR----NLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       110 Ii~~g~~~--~~--g~~r~~~---~~~----n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      |..+|...  .+  ..+..++   +.-    .....+.+.+.|.+.. .+.||++|
T Consensus        76 VnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~-~G~IV~is  130 (252)
T d1zmta1          76 VSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFIT  130 (252)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEEC
T ss_pred             EECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccc-cceeeccc
Confidence            98877532  22  1222221   222    2456777888887754 45566665

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=94.01  E-value=0.051  Score=46.38  Aligned_cols=109  Identities=14%  Similarity=0.179  Sum_probs=64.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------ccc
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------AVT  103 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~al  103 (350)
                      +.+.|.|| +.+|.+++..|++.|.  +|++.|++++...  ...++...   ........  +|.           +.+
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~--~~~~~~~g---~~~~~~~~Dvs~~~~v~~~~~~~~~~~   78 (247)
T d2ew8a1           6 KLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEA--EAAIRNLG---RRVLTVKCDVSQPGDVEAFGKQVISTF   78 (247)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHH--HHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCchHHH--HHHHHHcC---CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            35666798 7999999999999996  8999999875321  22233211   12222211  121           123


Q ss_pred             CCCCEEEEecCCCcC-c--cccHHH---HHHhh----HHHHHHHHhhhhccCCCeEEEEEc
Q 018760          104 AGSDLCIVTAGARQI-A--GESRLN---LLQRN----LSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~-~--g~~r~~---~~~~n----~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      ..-|++|..+|.... +  ..+..+   .+.-|    ....+.+.+.|.+.. .+.||++|
T Consensus        79 G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Iv~is  138 (247)
T d2ew8a1          79 GRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLT  138 (247)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             CCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcC-CCCccccc
Confidence            578999999886432 1  122222   22223    556677777777654 46667775

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=93.99  E-value=0.12  Score=44.24  Aligned_cols=74  Identities=14%  Similarity=0.148  Sum_probs=48.9

Q ss_pred             CCeEEEEcC-C--hhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC-----------c
Q 018760           37 HTKISVIGT-G--NVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD-----------Y  100 (350)
Q Consensus        37 ~~KI~IIGA-G--~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~-----------~  100 (350)
                      .+++.|+|| |  .+|.++|..|+..|.  +|++.|++++ ++..+.++.....   ...+...  ++           .
T Consensus         5 gK~alITGaag~~GIG~AiA~~la~~Ga--~V~i~~r~~~-~~~~~~~l~~~~~---~~~~~~~d~~~~~~~~~~~~~~~   78 (274)
T d2pd4a1           5 GKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNES-LEKRVRPIAQELN---SPYVYELDVSKEEHFKSLYNSVK   78 (274)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTT-THHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHCCC--EEEEEeCCHH-HHHHHHHHHhhCC---ceeEeeecccchhhHHHHHHHHH
Confidence            457888897 5  599999999999996  9999999865 3334555554332   1122211  11           1


Q ss_pred             cccCCCCEEEEecCCC
Q 018760          101 AVTAGSDLCIVTAGAR  116 (350)
Q Consensus       101 ~al~~aDiVIi~~g~~  116 (350)
                      +.+...|++|.+++..
T Consensus        79 ~~~g~id~lV~nag~~   94 (274)
T d2pd4a1          79 KDLGSLDFIVHSVAFA   94 (274)
T ss_dssp             HHTSCEEEEEECCCCC
T ss_pred             HHcCCCCeEEeecccc
Confidence            2346789999987754

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.94  E-value=0.37  Score=37.17  Aligned_cols=107  Identities=12%  Similarity=0.134  Sum_probs=65.1

Q ss_pred             CCeEEEEcCC----hhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccC-CCCEEEE
Q 018760           37 HTKISVIGTG----NVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTA-GSDLCIV  111 (350)
Q Consensus        37 ~~KI~IIGAG----~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~-~aDiVIi  111 (350)
                      +..|+||||+    ..|..++..|...|+  +|+.+....+.+.+              .++  ..+.+++. ..|+|++
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~--~v~pVnP~~~~i~G--------------~~~--~~sl~dlp~~iD~v~i   80 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGY--DVYPVNPKYEEVLG--------------RKC--YPSVLDIPDKIEVVDL   80 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTCSEETT--------------EEC--BSSGGGCSSCCSEEEE
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCC--EEEEECCcccccCC--------------Ccc--cccccccCccceEEEE
Confidence            4589999984    678999999999886  88888776543332              122  23455544 6799999


Q ss_pred             ecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCC
Q 018760          112 TAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTN  181 (350)
Q Consensus       112 ~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~  181 (350)
                      +..                .+.+.++.+++.+...+++++..+.-.+.....+ +..|+   +++|=-|.
T Consensus        81 ~vp----------------~~~~~~~~~e~~~~g~k~v~~~~G~~~ee~~~~a-~~~gi---~vig~~C~  130 (139)
T d2d59a1          81 FVK----------------PKLTMEYVEQAIKKGAKVVWFQYNTYNREASKKA-DEAGL---IIVANRCM  130 (139)
T ss_dssp             CSC----------------HHHHHHHHHHHHHHTCSEEEECTTCCCHHHHHHH-HHTTC---EEEESCCH
T ss_pred             EeC----------------HHHHHHHHHHHHHhCCCEEEEeccccCHHHHHHH-HHCCC---EEEcCCcC
Confidence            852                3444555555556666665443333333333333 34566   77765463

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.84  E-value=0.042  Score=42.33  Aligned_cols=35  Identities=29%  Similarity=0.620  Sum_probs=31.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      +.||+|||+|.+|.-+|..|...+.  +|.+++..+.
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~--~Vtvie~~~~   69 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANM--HVTLLDTAAR   69 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCc--ceeeeeeccc
Confidence            4699999999999999999999985  9999998654

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.82  E-value=0.056  Score=45.81  Aligned_cols=44  Identities=18%  Similarity=0.234  Sum_probs=36.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      +.+.|+|| +.+|..++..|++.|.  +|++.|+++++++....++.
T Consensus         6 KvalITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~   50 (248)
T d2o23a1           6 LVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLG   50 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhC
Confidence            34557798 8999999999999996  89999999998887665554

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.82  E-value=0.011  Score=45.51  Aligned_cols=68  Identities=16%  Similarity=0.170  Sum_probs=42.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc--cCCCCEEEEec
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV--TAGSDLCIVTA  113 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a--l~~aDiVIi~~  113 (350)
                      ++.+|+|+|||++|..++..+....-..-+.++|-|+++.-.          .....+|....+.+.  -+..++++++.
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~----------~I~Gi~V~~~~~l~~~~~~~i~iai~~i   71 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGR----------PVRGGVIEHVDLLPQRVPGRIEIALLTV   71 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTC----------EETTEEEEEGGGHHHHSTTTCCEEEECS
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCC----------EECCEEEecHHHHHHHHhhcccEEEEeC
Confidence            456999999999999998765443323467889998865431          011346664444332  23456666663

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=93.77  E-value=0.1  Score=45.19  Aligned_cols=93  Identities=13%  Similarity=0.134  Sum_probs=57.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccc-hHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecCC
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADK-LRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAGA  115 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~-l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g~  115 (350)
                      +||.|+|| |.+|++++..|++.+.  +++++|...+. +. ....+.+..               .-.+.|+|+.+++.
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~--~vi~~~~~~~~~~~-~~~~~~~~~---------------~~~~~d~v~~~a~~   64 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRDELNLL-DSRAVHDFF---------------ASERIDQVYLAAAK   64 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTTTCCTT-CHHHHHHHH---------------HHHCCSEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcC--EEEEecCchhcccc-CHHHHHHHH---------------hhcCCCEEEEcchh
Confidence            49999999 9999999999999985  66666654321 00 001111110               01246778877643


Q ss_pred             CcC---ccccHHHHHHhhHHHHHHHHhhhhccCCCe
Q 018760          116 RQI---AGESRLNLLQRNLSLFKAIIPPLVKYSPDC  148 (350)
Q Consensus       116 ~~~---~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a  148 (350)
                      ...   ......+.+..|+..-..+...+.+++-.-
T Consensus        65 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~  100 (315)
T d1e6ua_          65 VGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNK  100 (315)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence            211   112345556678888888888888876444

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.75  E-value=0.35  Score=41.31  Aligned_cols=75  Identities=9%  Similarity=0.118  Sum_probs=48.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc-cchHHHHHHHHHHhhcCCCceEEEc--CCc-----------c
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA-DKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------A  101 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~-~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~  101 (350)
                      .+++.|.|| +.+|.+++..|+..|.  +|++.|++. +.++.....+....   ........  ++.           +
T Consensus        18 gK~~lITGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~~~~~~g---~~~~~~~~D~~~~~~v~~~~~~~~~   92 (272)
T d1g0oa_          18 GKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG---SDAACVKANVGVVEDIVRMFEEAVK   92 (272)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT---CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchHHHHHHHHHHHhhC---CceeeEeCCCCCHHHHHHHHHHHHH
Confidence            346777798 8999999999999996  899999875 44554444444322   11222211  111           2


Q ss_pred             ccCCCCEEEEecCCC
Q 018760          102 VTAGSDLCIVTAGAR  116 (350)
Q Consensus       102 al~~aDiVIi~~g~~  116 (350)
                      .+..-|++|..++..
T Consensus        93 ~~g~idilV~nag~~  107 (272)
T d1g0oa_          93 IFGKLDIVCSNSGVV  107 (272)
T ss_dssp             HHSCCCEEEECCCCC
T ss_pred             HhCCCCccccccccc
Confidence            345779999998754

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.52  E-value=0.023  Score=48.60  Aligned_cols=34  Identities=26%  Similarity=0.503  Sum_probs=30.6

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      .|||.|+|| |.+|+.++..|...|.  +|+.+|+++
T Consensus         1 ~MKIlItGasGfiG~~l~~~L~~~g~--~Vi~~~r~~   35 (281)
T d1vl0a_           1 HMKILITGANGQLGREIQKQLKGKNV--EVIPTDVQD   35 (281)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEeechh
Confidence            489999999 9999999999999886  899999865

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.48  E-value=0.015  Score=47.55  Aligned_cols=37  Identities=19%  Similarity=0.389  Sum_probs=28.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      |.||+|.|.|.+|+.++..+.+++-+.-|.+-|..+.
T Consensus         1 MIKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~   37 (178)
T d1b7go1           1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPN   37 (178)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCS
T ss_pred             CeEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCc
Confidence            4699999999999999999988764433444566553

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=93.34  E-value=0.77  Score=38.48  Aligned_cols=113  Identities=14%  Similarity=0.093  Sum_probs=61.2

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc---chHHHHHHHHHHhhcCCCceEEEc--CCc-------ccc
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD---KLRGEMLDLQHAAAFLPRTKILAS--VDY-------AVT  103 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~---~l~~~~~dl~~~~~~~~~~~v~~t--~~~-------~al  103 (350)
                      ...|.|+|+ |.+|..++..|++.|. ..|+|+.+++.   .++....++....   ....+...  +|.       +.+
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga-~~vvl~~R~~~~~~~~~~~~~~l~~~g---~~v~~~~~Dv~d~~~~~~~~~~i   84 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEALG---ARTTVAACDVTDRESVRELLGGI   84 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHTT---CEEEEEECCTTCHHHHHHHHHTS
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCccCHHHHHHHHHHHHhcc---ccccccccccchHHHHHHhhccc
Confidence            347889998 8999999999999985 47999987643   3333333443221   11222211  111       111


Q ss_pred             ---CCCCEEEEecCCCcCc---cccHHH---HHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          104 ---AGSDLCIVTAGARQIA---GESRLN---LLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       104 ---~~aDiVIi~~g~~~~~---g~~r~~---~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                         ...|.||.++|.....   ..+..+   .+.-|+.-...+.+.+..... +.+|++|
T Consensus        85 ~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~-~~iv~~S  143 (259)
T d2fr1a1          85 GDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDL-TAFVLFS  143 (259)
T ss_dssp             CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCC-SEEEEEE
T ss_pred             cccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCC-ceEeeec
Confidence               2467888887764322   122221   233455544455555554433 4455554

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.24  E-value=0.056  Score=40.47  Aligned_cols=36  Identities=6%  Similarity=0.068  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      +..+|+|||+|.+|.-+|..|...+.  ++.+++..+.
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~g~--~vt~i~~~~~   56 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNATGR--RTVMLVRTEP   56 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC--EEEEECSSCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcch--hheEeeccch
Confidence            45799999999999999999998884  9999998654

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.23  E-value=0.42  Score=41.21  Aligned_cols=114  Identities=14%  Similarity=0.171  Sum_probs=60.8

Q ss_pred             CeEEEE-cC-ChhHHHHHHHHHhcCCCCeEEEEe---CCccchHHHHHHHHHHhhcCCCceEEEc--CCccc--------
Q 018760           38 TKISVI-GT-GNVGMAIAQTILTQDFVEELALVD---AKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAV--------  102 (350)
Q Consensus        38 ~KI~II-GA-G~vG~~~a~~l~~~~~~~ev~L~D---~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~a--------  102 (350)
                      +||++| || +.+|.++|..|++.|.  .+++++   .+.+..+.....................  +|.++        
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga--~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~   79 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPS--QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERV   79 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTT--CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTC
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCC--CeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhc
Confidence            588766 98 8999999999999885  444444   4444443322222222111112222211  11111        


Q ss_pred             -cCCCCEEEEecCCCcCcc---ccH---HHHHHhh----HHHHHHHHhhhhccCCCeEEEEEc
Q 018760          103 -TAGSDLCIVTAGARQIAG---ESR---LNLLQRN----LSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       103 -l~~aDiVIi~~g~~~~~g---~~r---~~~~~~n----~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                       -...|++|..+|......   .+.   ...+.-|    ....+.+.+.|.+.. .+.||++|
T Consensus        80 ~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~-~G~Iv~is  141 (285)
T d1jtva_          80 TEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG-SGRVLVTG  141 (285)
T ss_dssp             TTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEE
T ss_pred             cccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcC-CCceEEEe
Confidence             145799999887543211   111   1122223    556777888887754 45566664

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=93.22  E-value=0.44  Score=40.10  Aligned_cols=110  Identities=13%  Similarity=0.110  Sum_probs=65.6

Q ss_pred             EEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeC-CccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------cccC
Q 018760           40 ISVIGT-GNVGMAIAQTILTQDFVEELALVDA-KADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------AVTA  104 (350)
Q Consensus        40 I~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~-~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~al~  104 (350)
                      |.|.|| +.+|..++..|++.|.  +|++.|. +++.++....++....   .+......  +|.           +.+.
T Consensus         4 ~lITGas~GIG~a~a~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~g---~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   78 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAYG---GQAITFGGDVSKEADVEAMMKTAIDAWG   78 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHT---CEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC---CcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            455588 8999999999999995  8988776 5566665555555322   11111111  111           1235


Q ss_pred             CCCEEEEecCCCcC-c--cccHHH---HHH----hhHHHHHHHHhhhhccCCCeEEEEEcC
Q 018760          105 GSDLCIVTAGARQI-A--GESRLN---LLQ----RNLSLFKAIIPPLVKYSPDCILLIVAN  155 (350)
Q Consensus       105 ~aDiVIi~~g~~~~-~--g~~r~~---~~~----~n~~i~~~i~~~i~~~~p~a~viv~tN  155 (350)
                      .-|++|..+|.... +  ..+..+   .+.    ......+.+.+.|.+. ..+.||++|-
T Consensus        79 ~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~IVnisS  138 (244)
T d1edoa_          79 TIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK-RKGRIINIAS  138 (244)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHc-CCcEEEEEcC
Confidence            78999999876432 1  112111   122    2355677777777764 4577777764

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.20  E-value=0.18  Score=40.04  Aligned_cols=76  Identities=9%  Similarity=0.038  Sum_probs=46.1

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHH-HHHHHHhhcCCCceEEEcCCc-cccCCCCEEEE
Q 018760           35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEM-LDLQHAAAFLPRTKILASVDY-AVTAGSDLCIV  111 (350)
Q Consensus        35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~-~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi  111 (350)
                      .+..||+++|- .+|..+++..+..-|.  ++.++-...-...... ..+.... ......+..+.|. +++++||+|..
T Consensus         2 l~gl~Ia~VGD~~nv~~Sli~~l~~~g~--~v~~~~P~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~ea~~~adviy~   78 (163)
T d1pvva2           2 IKGVKVVYVGDGNNVAHSLMIAGTKLGA--DVVVATPEGYEPDEKVIKWAEQNA-AESGGSFELLHDPVKAVKDADVIYT   78 (163)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHTTC--EEEEECCTTCCCCHHHHHHHHHHH-HHHTCEEEEESCHHHHTTTCSEEEE
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHcCC--eEEEecccccCCChHHHHHHHHhh-hcccceEEEecCHHHHhhhccEEee
Confidence            35679999998 5677777777777775  8998876421111111 1111111 0013355656676 68999999887


Q ss_pred             ec
Q 018760          112 TA  113 (350)
Q Consensus       112 ~~  113 (350)
                      ..
T Consensus        79 ~~   80 (163)
T d1pvva2          79 DV   80 (163)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.20  E-value=0.09  Score=41.68  Aligned_cols=75  Identities=15%  Similarity=0.185  Sum_probs=47.8

Q ss_pred             CCCeEEEEc-C-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH-HHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEE
Q 018760           36 RHTKISVIG-T-GNVGMAIAQTILTQDFVEELALVDAKADKLR-GEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIV  111 (350)
Q Consensus        36 ~~~KI~IIG-A-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~-~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi  111 (350)
                      +..||+++| + .+|-.+++..+..-|.  +++++-...-... ........... ....++..++|. +++++||+|..
T Consensus         2 ~g~ki~~vGD~~nnV~~Sli~~~~~~g~--~i~~~~P~~~~~~~~~~~~~~~~~~-~~~~~i~~~~d~~~ai~~aDviyt   78 (161)
T d1vlva2           2 KGVKVVFMGDTRNNVATSLMIACAKMGM--NFVACGPEELKPRSDVFKRCQEIVK-ETDGSVSFTSNLEEALAGADVVYT   78 (161)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHTTC--EEEEESCGGGCCCHHHHHHHHHHHH-HHCCEEEEESCHHHHHTTCSEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEecchhhhhhhhHHHHHHHHHh-hcCCceEEEecHHHhhhhhhheec
Confidence            457999999 5 6788888888888786  8888876431111 11112221111 013467777786 68999999998


Q ss_pred             ec
Q 018760          112 TA  113 (350)
Q Consensus       112 ~~  113 (350)
                      ..
T Consensus        79 ~~   80 (161)
T d1vlva2          79 DV   80 (161)
T ss_dssp             CC
T ss_pred             cc
Confidence            74

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.14  E-value=0.044  Score=41.55  Aligned_cols=38  Identities=21%  Similarity=0.359  Sum_probs=32.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccch
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKL   75 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l   75 (350)
                      .+.+++|||+|.+|.-+|..+...|.  +|+++.+.+..+
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~--~Vtvi~~~~~~l   61 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGS--EVTVVEFASEIV   61 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTC--EEEEECSSSSSS
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCC--eEEEEEEccccC
Confidence            45799999999999999999999995  999999876443

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.08  E-value=0.063  Score=40.88  Aligned_cols=38  Identities=21%  Similarity=0.335  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      .+.+.+++|||+|.+|.-+|..+...|.  ++++++..+.
T Consensus        23 ~~~p~~vvIiGgG~IG~E~A~~~~~~G~--~Vtive~~~~   60 (125)
T d1ojta2          23 KEVPGKLLIIGGGIIGLEMGTVYSTLGS--RLDVVEMMDG   60 (125)
T ss_dssp             CCCCSEEEEESCSHHHHHHHHHHHHHTC--EEEEECSSSS
T ss_pred             cccCCeEEEECCCHHHHHHHHHhhcCCC--EEEEEEeecc
Confidence            3456799999999999999999999995  9999988654

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=93.02  E-value=0.041  Score=47.12  Aligned_cols=32  Identities=34%  Similarity=0.523  Sum_probs=29.0

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      -|+|||||.+|.+.|+.|+++|.  +|+|+|...
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~--~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGV--KTLLVDAFD   36 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC--CEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            48999999999999999999996  899999753

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.98  E-value=0.049  Score=38.10  Aligned_cols=34  Identities=21%  Similarity=0.325  Sum_probs=29.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      ++|+|+|+|..|+-++..-..-|+  +++.+|.+++
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~--~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGI--AVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTE--EEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC--EEEEEcCCCC
Confidence            589999999999998877777776  9999998764

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.92  E-value=0.0054  Score=54.26  Aligned_cols=129  Identities=16%  Similarity=0.255  Sum_probs=69.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhc----CCC-----CeEEEEeCCccchHHHHHHHH-HHhhcCCCceEEEcCCc-cccC-
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQ----DFV-----EELALVDAKADKLRGEMLDLQ-HAAAFLPRTKILASVDY-AVTA-  104 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~----~~~-----~ev~L~D~~~~~l~~~~~dl~-~~~~~~~~~~v~~t~~~-~al~-  104 (350)
                      ..||+|.|||+.|..++..|...    |+.     +.++++|..---.+....++. +...+.....-....+. ++++ 
T Consensus        25 d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~~  104 (294)
T d1pj3a1          25 EHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNI  104 (294)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHHH
T ss_pred             HcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHHh
Confidence            45899999999999998775543    432     479999985311111000011 11111100000001233 3333 


Q ss_pred             -CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch---HHHHHHHHhCCCCCcEeeecC
Q 018760          105 -GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI---LTYVAWKLSGLPSNRVIGSGT  180 (350)
Q Consensus       105 -~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~---~~~~~~~~sg~~~~rviG~g~  180 (350)
                       +.|++|-+.+.+.   .-       +    +++.+.|.+.+++.+|+-.|||..-   ...-+++.+.  -+-+|..|+
T Consensus       105 ~kptvliG~S~~~g---~f-------t----~evi~~Ma~~~~~PIIFaLSNPt~~~e~~~~~a~~~t~--grai~asGs  168 (294)
T d1pj3a1         105 LKPSTIIGVAGAGR---LF-------T----PDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTE--GRCLFASGS  168 (294)
T ss_dssp             HCCSEEEECCCSSC---CS-------C----HHHHHHHHHHCSSCEEEECCSSGGGCSCCHHHHHHHTT--TCCEEEESS
T ss_pred             cCCceEEEecCCCC---cC-------C----HHHHHHHHhcCCCcEEEEccCCCCcCCcCHHHHHhhcc--CceEeecCC
Confidence             7888887765432   11       1    3345566678999999999999754   3444555552  134555554


Q ss_pred             C
Q 018760          181 N  181 (350)
Q Consensus       181 ~  181 (350)
                      -
T Consensus       169 p  169 (294)
T d1pj3a1         169 P  169 (294)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.92  E-value=0.072  Score=42.13  Aligned_cols=40  Identities=20%  Similarity=0.329  Sum_probs=33.9

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      ++..+|.|+|+|.+|...+..+...|.  +|+.+|+++++++
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~--~Vi~~~~~~~~~~   65 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMGL--HVAAIDIDDAKLE   65 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHH
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcCC--ccceecchhhHHH
Confidence            344689999999999998888888783  8999999998775

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=92.91  E-value=0.047  Score=46.30  Aligned_cols=34  Identities=15%  Similarity=0.302  Sum_probs=28.8

Q ss_pred             CeE-EEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           38 TKI-SVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        38 ~KI-~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      ||| .|.|| +.+|.++|..|++.|.  +|++.|++++
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga--~V~~~~~~~~   36 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRDA   36 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECChH
Confidence            565 55587 8999999999999996  8999999764

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=92.88  E-value=0.034  Score=47.25  Aligned_cols=35  Identities=17%  Similarity=0.284  Sum_probs=31.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      ...|.|||||..|...|..+++.+.  +|+|+|.++.
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~--~V~vlEk~~~   38 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGK--SVTVFDNGKK   38 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC--CEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC--cEEEEecCCC
Confidence            3579999999999999999999996  8999999865

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.87  E-value=0.065  Score=43.20  Aligned_cols=40  Identities=13%  Similarity=0.286  Sum_probs=33.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      +.-+|.|+|||.+|...+..+...|. ..|+.+|.++++++
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~~~   67 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGA-ENVIVIAGSPNRLK   67 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB-SEEEEEESCHHHHH
T ss_pred             CCCEEEEECCCccchhheeccccccc-cccccccccccccc
Confidence            34689999999999998888877775 48999999998876

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=92.75  E-value=0.066  Score=44.44  Aligned_cols=66  Identities=17%  Similarity=0.177  Sum_probs=47.0

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-cCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-TAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l~~aDiVIi~~  113 (350)
                      -+..+|+|-|.|+||+.++..|.+.|.  .|+.+|++.+++..    ...   +  ..+..  ...+. -.+||+++-|+
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Ga--kvvv~d~d~~~~~~----~~~---~--g~~~~--~~~~~~~~~~DI~iPcA   91 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGA--QLLVADTDTERVAH----AVA---L--GHTAV--ALEDVLSTPCDVFAPCA   91 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHH----HHH---T--TCEEC--CGGGGGGCCCSEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEecchHHHHHH----HHh---h--ccccc--Cccccccccceeeeccc
Confidence            455799999999999999999999995  89999999876542    111   1  12222  11233 34899998886

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.71  E-value=0.22  Score=39.32  Aligned_cols=40  Identities=18%  Similarity=0.279  Sum_probs=32.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      +.-+|.|+|+ |.+|...+..+...+. .+|+..|.++++++
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~-~~V~~~~~~~~~~~   67 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVE   67 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHH
T ss_pred             CCCEEEEEeccccceeeeeeccccccc-ccccccccchhhHH
Confidence            3458999996 9999988887777775 48999999998775

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.68  E-value=0.092  Score=50.02  Aligned_cols=34  Identities=12%  Similarity=0.379  Sum_probs=30.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      ..||+|||+|.+|+.++..|+..|+ ++++|+|-+
T Consensus        25 ~s~VlvvG~gglG~Ei~knLvl~GV-g~itivD~d   58 (529)
T d1yova1          25 SAHVCLINATATGTEILKNLVLPGI-GSFTIIDGN   58 (529)
T ss_dssp             HCEEEECCCSHHHHHHHHHHHTTTC-SEEEEECCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhcC-CEEEEEcCC
Confidence            4599999999999999999999996 699999964

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.59  E-value=0.084  Score=45.07  Aligned_cols=46  Identities=17%  Similarity=0.242  Sum_probs=37.9

Q ss_pred             CeEEEE-cC-ChhHHHHHHHHHh---cCCCCeEEEEeCCccchHHHHHHHHHH
Q 018760           38 TKISVI-GT-GNVGMAIAQTILT---QDFVEELALVDAKADKLRGEMLDLQHA   85 (350)
Q Consensus        38 ~KI~II-GA-G~vG~~~a~~l~~---~~~~~ev~L~D~~~~~l~~~~~dl~~~   85 (350)
                      .||+|| || +.+|..+|..|++   .|  ..|+++|+++++++....++...
T Consensus         6 gKvalITGas~GIG~aiA~~lA~~~~~G--~~Vv~~~r~~~~l~~~~~~l~~~   56 (259)
T d1oaaa_           6 CAVCVLTGASRGFGRALAPQLARLLSPG--SVMLVSARSESMLRQLKEELGAQ   56 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTT--CEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHhcccCC--CEEEEEECCHHHHHHHHHHHHhh
Confidence            478777 88 7899999999986   45  39999999999998777777654

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.50  E-value=0.037  Score=44.83  Aligned_cols=37  Identities=30%  Similarity=0.491  Sum_probs=28.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      .+||+|.|.|.+|+.++..+...+-+.-|.+-|+++.
T Consensus         2 ~irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~   38 (172)
T d2czca2           2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPD   38 (172)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCS
T ss_pred             cEEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCCh
Confidence            4799999999999999988887764434455666553

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=92.47  E-value=0.31  Score=39.29  Aligned_cols=76  Identities=16%  Similarity=0.163  Sum_probs=47.8

Q ss_pred             CCCeEEEEc-C-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH-HHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEE
Q 018760           36 RHTKISVIG-T-GNVGMAIAQTILTQDFVEELALVDAKADKLR-GEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIV  111 (350)
Q Consensus        36 ~~~KI~IIG-A-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~-~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi  111 (350)
                      +..||+++| + .+|..+++..+..-|.  +|+++-...-... .....+..... .....+..+.+. ++++++|+|..
T Consensus         4 ~~l~i~~vGD~~nnv~~Sli~~~~~~g~--~l~~~~P~~~~~~~~~~~~~~~~~~-~~g~~~~~~~d~~~a~~~aDvvyt   80 (183)
T d1duvg2           4 NEMTLVYAGDARNNMGNSMLEAAALTGL--DLRLVAPQACWPEAALVTECRALAQ-QNGGNITLTEDVAKGVEGADFIYT   80 (183)
T ss_dssp             GGCEEEEESCTTSHHHHHHHHHHHHHCC--EEEEECCGGGCCCHHHHHHHHHHHH-HTTCEEEEESCHHHHHTTCSEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEEechHhhhhHHHHHHHHHHHH-hcCCceEEEechhhccccCCEEEE
Confidence            457999999 4 4687888877777786  8999876432111 11112221111 123456666776 58999999988


Q ss_pred             ecC
Q 018760          112 TAG  114 (350)
Q Consensus       112 ~~g  114 (350)
                      ..-
T Consensus        81 ~~w   83 (183)
T d1duvg2          81 DVW   83 (183)
T ss_dssp             CCS
T ss_pred             Eeh
Confidence            753

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=92.44  E-value=0.09  Score=44.91  Aligned_cols=101  Identities=13%  Similarity=0.166  Sum_probs=57.2

Q ss_pred             EEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC-------ccccCCCCEEEE
Q 018760           40 ISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD-------YAVTAGSDLCIV  111 (350)
Q Consensus        40 I~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~-------~~al~~aDiVIi  111 (350)
                      |.|+|| |.+|+.++..|++.|. .+|+.+|.-....+  ...+.+..    ........+       ...+..+++|+.
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~-~~V~~~d~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~   74 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTK--FVNLVDLN----IADYMDKEDFLIQIMAGEEFGDVEAIFH   74 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTC-CCEEEEECCSSGGG--GHHHHTSC----CSEEEEHHHHHHHHHTTCCCSSCCEEEE
T ss_pred             EEEecCccHHHHHHHHHHHhCCC-CeEEEEECCCCcch--hhcccccc----hhhhccchHHHHHHhhhhcccchhhhhh
Confidence            789998 9999999999999984 47899984222111  01111111    112211111       134577888888


Q ss_pred             ecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCC
Q 018760          112 TAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPD  147 (350)
Q Consensus       112 ~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~  147 (350)
                      +++....+..........|......+.......+..
T Consensus        75 ~aa~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~  110 (307)
T d1eq2a_          75 EGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIP  110 (307)
T ss_dssp             CCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTCC
T ss_pred             hccccccccccccccccccccccccccccccccccc
Confidence            776544343444444455566666666555555433

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.39  E-value=0.05  Score=47.67  Aligned_cols=33  Identities=12%  Similarity=0.320  Sum_probs=29.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      .+|+|||||-.|.++|..|++.|.  +|.++|.+.
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~--~V~iiEk~~   34 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNK--KVLVIEKRN   34 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTC--CEEEECSSS
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCC--cEEEEECCC
Confidence            479999999999999999999885  899999865

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.36  E-value=0.2  Score=40.58  Aligned_cols=76  Identities=13%  Similarity=0.096  Sum_probs=48.3

Q ss_pred             CCCeEEEEc-C-ChhHHHHHHHHHhcCCCCeEEEEeCCccch-HHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEE
Q 018760           36 RHTKISVIG-T-GNVGMAIAQTILTQDFVEELALVDAKADKL-RGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIV  111 (350)
Q Consensus        36 ~~~KI~IIG-A-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l-~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi  111 (350)
                      +..||++|| + .+|..+++..+..-|.  +|.++-...=.. +.....+...... ....+..+.+. ++++++|+|..
T Consensus         4 ~~lkia~vGD~~nnV~~Sli~~~~~~G~--~l~l~~P~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~eai~~aDvVyt   80 (185)
T d1dxha2           4 HDISYAYLGDARNNMGNSLLLIGAKLGM--DVRIAAPKALWPHDEFVAQCKKFAEE-SGAKLTLTEDPKEAVKGVDFVHT   80 (185)
T ss_dssp             GGCEEEEESCCSSHHHHHHHHHHHHTTC--EEEEECCGGGSCCHHHHHHHHHHHHH-HTCEEEEESCHHHHTTTCSEEEE
T ss_pred             CCCEEEEEcCCcchHHHHHHHHHHHcCC--EEEEEccHHHHhhhHHHHHHHHHhhc-cCCeEEEEeChhhccccccEEEe
Confidence            457999999 4 5788888888888786  899988643111 1112222221100 13456667776 68999999887


Q ss_pred             ecC
Q 018760          112 TAG  114 (350)
Q Consensus       112 ~~g  114 (350)
                      ..-
T Consensus        81 ~~w   83 (185)
T d1dxha2          81 DVW   83 (185)
T ss_dssp             CCC
T ss_pred             ehh
Confidence            643

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.33  E-value=0.98  Score=33.40  Aligned_cols=58  Identities=22%  Similarity=0.391  Sum_probs=39.6

Q ss_pred             CeEEEEcC----ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccC-CCCEEEEe
Q 018760           38 TKISVIGT----GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTA-GSDLCIVT  112 (350)
Q Consensus        38 ~KI~IIGA----G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~-~aDiVIi~  112 (350)
                      ++|+||||    +..|..+...|++.|+  +|+.+..+.+.+.+              .+.  ..+.+++. ..|+++++
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~--~V~pVnP~~~~i~G--------------~~~--y~sl~~lp~~~D~vvi~   63 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGF--EVLPVNPNYDEIEG--------------LKC--YRSVRELPKDVDVIVFV   63 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTCSEETT--------------EEC--BSSGGGSCTTCCEEEEC
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCC--EEEEEccccccccC--------------ccc--cccchhccccceEEEEE
Confidence            47999997    4678888899999997  78888765443321              122  23555553 45999998


Q ss_pred             c
Q 018760          113 A  113 (350)
Q Consensus       113 ~  113 (350)
                      .
T Consensus        64 v   64 (116)
T d1y81a1          64 V   64 (116)
T ss_dssp             S
T ss_pred             e
Confidence            5

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=92.23  E-value=0.063  Score=44.98  Aligned_cols=33  Identities=24%  Similarity=0.353  Sum_probs=30.0

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      -|+|||||..|...|..|++.|+  +|+|+|.++.
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~--~V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGA--NVLLLDKGNK   36 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC--CEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC--cEEEEeCCCC
Confidence            48999999999999999999996  9999998764

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.07  E-value=0.14  Score=42.67  Aligned_cols=41  Identities=20%  Similarity=0.363  Sum_probs=32.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCC-CeEEEEeCCccchH
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFV-EELALVDAKADKLR   76 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~-~ev~L~D~~~~~l~   76 (350)
                      ...||.|||.|..|..++..+...++- -+.+.+|.|.+.|.
T Consensus        14 ~~~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~   55 (209)
T d2vapa1          14 TKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLI   55 (209)
T ss_dssp             TCCCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHHH
T ss_pred             cCCcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHHHh
Confidence            346999999999999999998888763 37788888765443

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.05  E-value=0.19  Score=41.44  Aligned_cols=99  Identities=22%  Similarity=0.305  Sum_probs=61.2

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCC-CeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--------------------
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFV-EELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--------------------   97 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~-~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--------------------   97 (350)
                      +|.|||-|..|..++..+...++. -+++.+|.|...+.       ....   ..++...                    
T Consensus         3 ~IkViGvGGaG~n~vn~~~~~~~~~v~~iainTD~~~L~-------~~~~---~~ki~iG~~~t~G~Gagg~p~~g~~aa   72 (198)
T d1rq2a1           3 VIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQALL-------MSDA---DVKLDVGRDSTRGLGAGADPEVGRKAA   72 (198)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESCHHHHH-------HCCC---SEEEECCTTTC-----CCCHHHHHHHH
T ss_pred             eEEEEEeCchHHHHHHHHHHcCCCCceEEEEcchHHHHh-------cCCc---chhhccccccccCCCcCcChhhhHhhH
Confidence            688999999999999999988863 26777777654332       1110   1111110                    


Q ss_pred             -CC----ccccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc
Q 018760           98 -VD----YAVTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD  158 (350)
Q Consensus        98 -~~----~~al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~  158 (350)
                       .+    .+.++++|+||+++|.....|   .    .=+|++.++++.+..    -.+-++|-|-.
T Consensus        73 ~e~~~~I~~~l~~~d~vfi~AGlGGgTG---t----GaaPviA~iake~g~----l~v~ivt~PF~  127 (198)
T d1rq2a1          73 EDAKDEIEELLRGADMVFVTAGEGGGTG---T----GGAPVVASIARKLGA----LTVGVVTRPFS  127 (198)
T ss_dssp             HHTHHHHHHHHTTCSEEEEEEETTSSHH---H----HHHHHHHHHHHHHTC----EEEEEEEECCG
T ss_pred             HHHHHHHHHHhcCCCEEEEEEecCCCCC---c----chHHHHHHHHHHcCC----cEEEEEecChH
Confidence             11    146899999999988653322   1    126788878777532    22455566643

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.01  E-value=0.084  Score=42.86  Aligned_cols=33  Identities=15%  Similarity=0.254  Sum_probs=30.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      --|+|||||..|.+.|..|++.|.  +|.++|.++
T Consensus         6 yDviViGaG~~Gl~~A~~La~~G~--~V~vlE~~~   38 (297)
T d2bcgg1           6 YDVIVLGTGITECILSGLLSVDGK--KVLHIDKQD   38 (297)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC--CEEEEcCCC
Confidence            458999999999999999999996  899999975

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=91.87  E-value=0.017  Score=46.51  Aligned_cols=74  Identities=20%  Similarity=0.227  Sum_probs=41.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      ..+||+|+|| |.||+.++..+.+.+-+.=+..+|+.....-  ..|+...... ....+..+.+. +.++.+|+||=.
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~--g~d~~~~~~~-~~~~~~~~~~~~~~~~~~DViIDF   78 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLL--GSDAGELAGA-GKTGVTVQSSLDAVKDDFDVFIDF   78 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTC--SCCTTCSSSS-SCCSCCEESCSTTTTTSCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhc--cchhhhhhcc-ccCCceeeccHHHHhcccceEEEe
Confidence            4689999998 9999999998888752111234555332111  1122211111 12223334555 457899987654

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.86  E-value=0.14  Score=40.30  Aligned_cols=69  Identities=17%  Similarity=0.385  Sum_probs=41.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCC-CCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccCCCCEEEEecC
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDF-VEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTAGSDLCIVTAG  114 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~-~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~~aDiVIi~~g  114 (350)
                      -||+|||| |.+|.-+...|...++ ..++.++.-+..  .+.  .+...   ....... .....+..++|+++.+.+
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s--~G~--~~~~~---~~~~~~~-~~~~~~~~~~d~~f~~~~   72 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARS--AGK--SLKFK---DQDITIE-ETTETAFEGVDIALFSAG   72 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGG--TTC--EEEET---TEEEEEE-ECCTTTTTTCSEEEECSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccc--ccc--ccccc---CCccccc-ccchhhhhhhhhhhhccC
Confidence            48999999 9999999988887753 457777764321  110  01110   0111122 122356789999999864

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=91.80  E-value=0.2  Score=42.30  Aligned_cols=68  Identities=19%  Similarity=0.221  Sum_probs=48.0

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccc-cCCCCEEEEec
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAV-TAGSDLCIVTA  113 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~a-l~~aDiVIi~~  113 (350)
                      -+.++|+|-|.|+||+.++..|.+.|.  .|+..|++.++++.    +.+..    ..... . +.+. -.+||+++-|+
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~~Ga--kvv~~d~~~~~~~~----~~~~~----g~~~~-~-~~~~~~~~cDIl~PcA  104 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNTEGA--KLVVTDVNKAAVSA----AVAEE----GADAV-A-PNAIYGVTCDIFAPCA  104 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHH----HHHHH----CCEEC-C-GGGTTTCCCSEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC--EEEeecccHHHHHH----HHHhc----CCccc-C-CcccccccccEecccc
Confidence            455799999999999999999999995  89999999876653    22211    11222 1 1222 45899999997


Q ss_pred             C
Q 018760          114 G  114 (350)
Q Consensus       114 g  114 (350)
                      .
T Consensus       105 ~  105 (230)
T d1leha1         105 L  105 (230)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.64  E-value=0.33  Score=42.33  Aligned_cols=112  Identities=13%  Similarity=0.181  Sum_probs=61.7

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh-h-cCCCceEEEcCCc---ccc-C-CCC
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA-A-FLPRTKILASVDY---AVT-A-GSD  107 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~-~-~~~~~~v~~t~~~---~al-~-~aD  107 (350)
                      .++.||.|||+|.  ..++..++....+.+|.++|+|++.++....-+.... . ..++.++......   ... + .-|
T Consensus        79 ~~pk~VLiiGgG~--G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yD  156 (290)
T d1xj5a_          79 PNPKKVLVIGGGD--GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD  156 (290)
T ss_dssp             SCCCEEEEETCSS--SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred             CCCcceEEecCCc--hHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCcc
Confidence            4567999999874  2445666666555799999999987764333222111 1 1245666644222   222 2 468


Q ss_pred             EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEE-EcCC
Q 018760          108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLI-VANP  156 (350)
Q Consensus       108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv-~tNP  156 (350)
                      +||+-.-.|..+..   .  ..+.+.++.+.+.+   .|+|+++. ..+|
T Consensus       157 vIi~D~~dp~~~~~---~--L~t~eF~~~~~~~L---~~~Gi~v~q~~s~  198 (290)
T d1xj5a_         157 AVIVDSSDPIGPAK---E--LFEKPFFQSVARAL---RPGGVVCTQAESL  198 (290)
T ss_dssp             EEEECCCCTTSGGG---G--GGSHHHHHHHHHHE---EEEEEEEEECCCT
T ss_pred             EEEEcCCCCCCcch---h--hCCHHHHHHHHHhc---CCCcEEEEecCCc
Confidence            88886433321111   1  12445555554433   67887544 3455

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=91.60  E-value=0.053  Score=43.80  Aligned_cols=36  Identities=22%  Similarity=0.457  Sum_probs=30.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      +.+..+|+|||+|..|...|..+++.++  +++++|..
T Consensus         2 ~~k~~dVvIIGGGpaGl~AA~~~ar~g~--~v~iie~~   37 (190)
T d1trba1           2 TTKHSKLLILGSGPAGYTAAVYAARANL--QPVLITGM   37 (190)
T ss_dssp             CEEEEEEEEECCSHHHHHHHHHHHTTTC--CCEEECCS
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHcCC--ceEEEEee
Confidence            4566799999999999999999999886  88898853

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=91.30  E-value=0.093  Score=46.03  Aligned_cols=35  Identities=14%  Similarity=0.301  Sum_probs=31.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      ...|+|||||..|.+.|..|.+.|+  +++++|.+++
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~--~v~i~Ek~~~   41 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGR--SVHVIETAGD   41 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC--CEEEECSSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCC--CEEEEEcCCC
Confidence            4589999999999999999999997  8999999765

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=91.29  E-value=0.1  Score=44.23  Aligned_cols=151  Identities=15%  Similarity=0.112  Sum_probs=79.6

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------cc
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------AV  102 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~a  102 (350)
                      .+++.|+|| +.+|..+|..|+..|.  +|++.+++.++++....++..      .......  ++.           +.
T Consensus         5 gK~alItGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~------~~~~~~~Dls~~~~i~~~~~~i~~~   76 (241)
T d2a4ka1           5 GKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALEA------EAIAVVADVSDPKAVEAVFAEALEE   76 (241)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCCS------SEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCC------ceEEEEecCCCHHHHHHHHHHHHHH
Confidence            356778898 7899999999999996  999999999877643333321      1111111  011           22


Q ss_pred             cCCCCEEEEecCCCc-Cc--cccH---HHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcCCcchHHHHHHHHhCCCCCcE
Q 018760          103 TAGSDLCIVTAGARQ-IA--GESR---LNLLQRNLSLFKAIIPPLVKY-SPDCILLIVANPVDILTYVAWKLSGLPSNRV  175 (350)
Q Consensus       103 l~~aDiVIi~~g~~~-~~--g~~r---~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP~~~~~~~~~~~sg~~~~rv  175 (350)
                      +..-|++|..++... .+  ..+.   ...+.-|..-...+.+....+ .....+++.|........-..-|+   ..|-
T Consensus        77 ~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~~~~~~Y~---~sK~  153 (241)
T d2a4ka1          77 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAFGLAHYA---AGKL  153 (241)
T ss_dssp             HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCHHHHHHHH---HCSS
T ss_pred             hCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccccCccccc---hhhH
Confidence            357899999876542 22  1122   222333444333333333333 223345555543322211111111   1121


Q ss_pred             eeecCCccHHHHHHHHHHHcCCCCcceEEEEE
Q 018760          176 IGSGTNLDSSRFRFLLADHLDVNAQDVQAYIV  207 (350)
Q Consensus       176 iG~g~~ld~~r~~~~la~~l~v~p~~v~~~v~  207 (350)
                       |    +  ..+-+.+|+.+  .++.|++-.+
T Consensus       154 -a----l--~~lt~~lA~el--~~~gIrvN~I  176 (241)
T d2a4ka1         154 -G----V--VGLARTLALEL--ARKGVRVNVL  176 (241)
T ss_dssp             -H----H--HHHHHHHHHHH--TTTTCEEEEE
T ss_pred             -H----H--HHHHHHHHHHH--hHhCCEEeee
Confidence             2    2  45777888888  4455665544

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=91.13  E-value=0.43  Score=35.78  Aligned_cols=91  Identities=10%  Similarity=0.138  Sum_probs=56.1

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CC---c--cccCCCCEEEE
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VD---Y--AVTAGSDLCIV  111 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~---~--~al~~aDiVIi  111 (350)
                      .|.|+|.|.+|..++..|..    .+++++|.++++.+.    +...     ...+...  ++   +  ..+..|+.+|+
T Consensus         2 HivI~G~g~~g~~l~~~L~~----~~i~vi~~d~~~~~~----~~~~-----~~~~i~Gd~~~~~~L~~a~i~~A~~vi~   68 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELRG----SEVFVLAEDENVRKK----VLRS-----GANFVHGDPTRVSDLEKANVRGARAVIV   68 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSCG----GGEEEEESCTTHHHH----HHHT-----TCEEEESCTTSHHHHHHTTCTTCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHcC----CCCEEEEcchHHHHH----HHhc-----CccccccccCCHHHHHHhhhhcCcEEEE
Confidence            48899999999999988743    268899999986652    3321     1222221  12   2  24889999999


Q ss_pred             ecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcC-Cc
Q 018760          112 TAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVAN-PV  157 (350)
Q Consensus       112 ~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tN-P~  157 (350)
                      +....           ..|..+    +..+++++|+..++..++ |-
T Consensus        69 ~~~~d-----------~~n~~~----~~~~r~~~~~~~iia~~~~~~  100 (129)
T d2fy8a1          69 NLESD-----------SETIHC----ILGIRKIDESVRIIAEAERYE  100 (129)
T ss_dssp             CCSSH-----------HHHHHH----HHHHHHHCSSSCEEEECSSGG
T ss_pred             eccch-----------hhhHHH----HHHHHHHCCCceEEEEEcCHH
Confidence            85311           123332    344566788876655554 44

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.93  E-value=0.06  Score=43.71  Aligned_cols=35  Identities=14%  Similarity=0.302  Sum_probs=29.6

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      ....+|+|||+|..|...|..+++.++  +++++|..
T Consensus         3 ~~~~~VvIIGgGpaGl~aA~~~ar~g~--~v~vie~~   37 (192)
T d1vdca1           3 THNTRLCIVGSGPAAHTAAIYAARAEL--KPLLFEGW   37 (192)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTC--CCEEECCS
T ss_pred             cccceEEEECCCHHHHHHHHHHHHcCC--cEEEEEee
Confidence            345799999999999999999999886  78888853

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.88  E-value=0.11  Score=43.66  Aligned_cols=34  Identities=26%  Similarity=0.426  Sum_probs=30.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      .||.|+|| +.+|..++..|++.|.  +|+++|++++
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~--~V~~~~~~~~   37 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSAN   37 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCch
Confidence            48999999 8999999999999995  8999999764

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=90.80  E-value=0.41  Score=41.26  Aligned_cols=112  Identities=19%  Similarity=0.240  Sum_probs=59.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhh-c-CCCceEEEcCCcccc----CCCCEE
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAA-F-LPRTKILASVDYAVT----AGSDLC  109 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~-~-~~~~~v~~t~~~~al----~~aDiV  109 (350)
                      ++.+|.|||+|.  ..++..++......+|.++|+|++.++....-+..... + .++.++....-.+-+    +.-|+|
T Consensus        75 ~p~~vLiiGgG~--G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI  152 (274)
T d1iy9a_          75 NPEHVLVVGGGD--GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI  152 (274)
T ss_dssp             SCCEEEEESCTT--CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             CcceEEecCCCC--cHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence            456999999974  24455566655457999999999877643222221111 1 245666643212212    346998


Q ss_pred             EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEE-EcCCc
Q 018760          110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLI-VANPV  157 (350)
Q Consensus       110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv-~tNP~  157 (350)
                      |+-...|..+...     ..+.+.++.+.+.+   .|+|+++. ..+|.
T Consensus       153 i~D~~~p~~~~~~-----L~t~eFy~~~~~~L---~~~Gv~v~q~~s~~  193 (274)
T d1iy9a_         153 MVDSTEPVGPAVN-----LFTKGFYAGIAKAL---KEDGIFVAQTDNPW  193 (274)
T ss_dssp             EESCSSCCSCCCC-----CSTTHHHHHHHHHE---EEEEEEEEECCCTT
T ss_pred             EEcCCCCCCcchh-----hccHHHHHHHHhhc---CCCceEEEecCCcc
Confidence            8865433222211     11334444444433   57887544 34553

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.59  E-value=0.19  Score=41.33  Aligned_cols=108  Identities=18%  Similarity=0.222  Sum_probs=62.1

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCC-CeEEEEeCCccchHHHH--------HHHHHHhhcCCCce---EEEcCC----ccc
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFV-EELALVDAKADKLRGEM--------LDLQHAAAFLPRTK---ILASVD----YAV  102 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~-~ev~L~D~~~~~l~~~~--------~dl~~~~~~~~~~~---v~~t~~----~~a  102 (350)
                      +|.|||-|..|..++..+...++. -+++.+|.|.+.|....        .++........+.+   ..+..+    .+.
T Consensus         3 ~IkViGvGGaG~n~v~~~~~~~~~~v~~iainTD~~~L~~~~~~~ki~iG~~~~~g~G~gg~p~~g~~aa~e~~~~I~~~   82 (198)
T d1ofua1           3 VIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIAARTVLQLGPGVTKGLGAGANPEVGRQAALEDRERISEV   82 (198)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESBTGGGSSCSCSEEEECCHHHHTTBCCCSCHHHHHHHHHHTHHHHHHH
T ss_pred             eEEEEEECchHHHHHHHHHHcCCCCeEEEEEeCcHHHHhcCCccceeccccccccCCCCCCChHHHHHHHHHHHHHHHHH
Confidence            688999999999999999988763 27888898877664200        01111100000000   000011    145


Q ss_pred             cCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc
Q 018760          103 TAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV  157 (350)
Q Consensus       103 l~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~  157 (350)
                      ++++|+||+++|.....|   .    .-+|++.++++...    --++-++|-|-
T Consensus        83 l~~~d~vfi~AGlGGGTG---t----gaapviA~~ake~g----~lvvaivtlPF  126 (198)
T d1ofua1          83 LEGADMVFITTGMGGGTG---T----GAAPIIAEVAKEMG----ILTVAVVTRPF  126 (198)
T ss_dssp             HTTCSEEEEEEETTSSHH---H----HHHHHHHHHHHHTT----CEEEEEEEECC
T ss_pred             hCCCCeEEEEecCCCCcc---c----cHHHHHHHHHHHcC----CCEEEEEecch
Confidence            899999999988653222   1    13577777776542    12344556554

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.58  E-value=0.39  Score=38.03  Aligned_cols=92  Identities=15%  Similarity=0.185  Sum_probs=56.6

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc----cccCCCCEE
Q 018760           35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY----AVTAGSDLC  109 (350)
Q Consensus        35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~----~al~~aDiV  109 (350)
                      .+..+|.|.|| |.+|...+..+...|.  +++..+.++++++. +   ....   .. .+.-..+.    ..-+++|+|
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~--~vi~~~~~~~~~~~-~---~~lG---a~-~~i~~~~~~~~~~~~~g~D~v   95 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAMGL--RVLAAASRPEKLAL-P---LALG---AE-EAATYAEVPERAKAWGGLDLV   95 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTC--EEEEEESSGGGSHH-H---HHTT---CS-EEEEGGGHHHHHHHTTSEEEE
T ss_pred             CCCCEEEEEeccccchhhhhhhhccccc--cccccccccccccc-c---cccc---cc-eeeehhhhhhhhhcccccccc
Confidence            34568999997 9999998888888885  88888988887752 2   2211   11 22222221    245789999


Q ss_pred             EEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCC
Q 018760          110 IVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANP  156 (350)
Q Consensus       110 Ii~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  156 (350)
                      +.++|..          +       .   ..++-..|.+.++.+.+|
T Consensus        96 ~d~~G~~----------~-------~---~~~~~l~~~G~~v~~G~~  122 (171)
T d1iz0a2          96 LEVRGKE----------V-------E---ESLGLLAHGGRLVYIGAA  122 (171)
T ss_dssp             EECSCTT----------H-------H---HHHTTEEEEEEEEEC---
T ss_pred             ccccchh----------H-------H---HHHHHHhcCCcEEEEeCC
Confidence            9986511          1       1   123334678888888654

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.54  E-value=0.44  Score=38.08  Aligned_cols=50  Identities=16%  Similarity=0.236  Sum_probs=36.0

Q ss_pred             hhccccCCCCCCCCCCCCeEEEEcCC-hhHHHHHHHHHhcCCCCeEEEEeCCccch
Q 018760           21 FFKPINHAAPPSPTKRHTKISVIGTG-NVGMAIAQTILTQDFVEELALVDAKADKL   75 (350)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~KI~IIGAG-~vG~~~a~~l~~~~~~~ev~L~D~~~~~l   75 (350)
                      -.+.+.+-..   .-+..+|+|||.+ -||.+++.+|++.+.  .|.+++.....+
T Consensus        26 ii~lL~~~~i---~l~Gk~vvVIGrS~iVGrPLa~lL~~~ga--tVt~~~~~t~~l   76 (170)
T d1a4ia1          26 CLELIKETGV---PIAGRHAVVVGRSKIVGAPMHDLLLWNNA--TVTTCHSKTAHL   76 (170)
T ss_dssp             HHHHHHTTTC---CCTTCEEEEECCCTTTHHHHHHHHHHTTC--EEEEECTTCSSH
T ss_pred             HHHHHHHhCc---ccccceEEEEecCCccchHHHHHHHhccC--ceEEEecccccH
Confidence            3344444443   3455789999995 689999999999984  889988765433

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.50  E-value=0.11  Score=44.89  Aligned_cols=31  Identities=26%  Similarity=0.529  Sum_probs=28.1

Q ss_pred             EEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           40 ISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        40 I~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      |+|||||..|.+.|+.|.+.|.  +|+++|.+.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~--~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGL--NVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            7899999999999999999996  899999643

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=90.47  E-value=0.12  Score=46.21  Aligned_cols=102  Identities=17%  Similarity=0.191  Sum_probs=55.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCcccc----C--CCCE
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDYAVT----A--GSDL  108 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~~al----~--~aDi  108 (350)
                      |||.|+|| |.+|+.++..|+..+. ..++++|.......  ...+.+... .....+...  +|.+.+    +  ++|+
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~-~vv~~~d~~~~~~~--~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~~~~~d~   76 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQ-DTVVNIDKLTYAGN--LESLSDISE-SNRYNFEHADICDSAEITRIFEQYQPDA   76 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCS-CEEEEEECCCTTCC--GGGGTTTTT-CTTEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCCcccc--HHHHHhhhh-cCCcEEEEccCCCHHHHHHHHHhCCCCE
Confidence            79999998 9999999999999885 34677886332110  001222111 112333322  122222    2  5899


Q ss_pred             EEEecCCCcCcc--ccHHHHHHhhHHHHHHHHhhhhc
Q 018760          109 CIVTAGARQIAG--ESRLNLLQRNLSLFKAIIPPLVK  143 (350)
Q Consensus       109 VIi~~g~~~~~g--~~r~~~~~~n~~i~~~i~~~i~~  143 (350)
                      ||-+|.....+-  ......+..|+.-...+...+.+
T Consensus        77 VihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~  113 (361)
T d1kewa_          77 VMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARK  113 (361)
T ss_dssp             EEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHH
T ss_pred             EEECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            999876432110  11233455565555555555544

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.42  E-value=0.23  Score=43.27  Aligned_cols=108  Identities=15%  Similarity=0.203  Sum_probs=57.1

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh-hc-CCCceEEEcCC-cccc----CCCC
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA-AF-LPRTKILASVD-YAVT----AGSD  107 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~-~~-~~~~~v~~t~~-~~al----~~aD  107 (350)
                      .++.+|.|||+|.  ..++..++......+|.++|+|++.++....-+.... .+ .++.++... | .+-+    +.-|
T Consensus        77 ~~pk~vLiiGgG~--G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~-Da~~~l~~~~~~yD  153 (285)
T d2o07a1          77 PNPRKVLIIGGGD--GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVG-DGFEFMKQNQDAFD  153 (285)
T ss_dssp             SSCCEEEEEECTT--SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEES-CHHHHHHTCSSCEE
T ss_pred             cCcCeEEEeCCCc--hHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEc-cHHHHHhcCCCCCC
Confidence            4567999999974  2455666666545799999999987763333222111 12 256666643 4 2222    3459


Q ss_pred             EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEE
Q 018760          108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV  153 (350)
Q Consensus       108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~  153 (350)
                      +||+-.-.|..+  . ..  ..+.+.++.+.+.+   .|+|+++.-
T Consensus       154 vIi~D~~~p~~~--~-~~--L~t~eF~~~~~~~L---~~~Gi~v~q  191 (285)
T d2o07a1         154 VIITDSSDPMGP--A-ES--LFKESYYQLMKTAL---KEDGVLCCQ  191 (285)
T ss_dssp             EEEEECC----------------CHHHHHHHHHE---EEEEEEEEE
T ss_pred             EEEEcCCCCCCc--c-cc--cccHHHHHHHHHhc---CCCCeEEEe
Confidence            999875333211  1 11  12334444444333   678875443

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.40  E-value=0.11  Score=40.56  Aligned_cols=30  Identities=23%  Similarity=0.560  Sum_probs=25.6

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      ||+|||+|.+|.-+|..|.. +  .+|++++..
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~--~~Vtvv~~~   31 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-T--YEVTVIDKE   31 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-T--SEEEEECSS
T ss_pred             eEEEECCcHHHHHHHHHHHc-C--CCEEEEecc
Confidence            89999999999999988865 3  289999864

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=90.32  E-value=0.11  Score=45.46  Aligned_cols=33  Identities=18%  Similarity=0.561  Sum_probs=28.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHh-----cCCCCeEEEEeCCc
Q 018760           38 TKISVIGTGNVGMAIAQTILT-----QDFVEELALVDAKA   72 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~-----~~~~~ev~L~D~~~   72 (350)
                      --|+|||||.+|.++|..|++     .|+  +|+|+|..+
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~--~v~vlEr~~   45 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPDL--KVRIIDKRS   45 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTC--CEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCC--cEEEEcCCC
Confidence            359999999999999999975     465  899999864

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.15  E-value=0.18  Score=42.33  Aligned_cols=35  Identities=20%  Similarity=0.371  Sum_probs=30.9

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           37 HTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        37 ~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      .++|.|+|| |.+|..++..|++.|.  +|+++|++++
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~--~V~~~~~~~~   37 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVEN   37 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCcc
Confidence            468999999 8999999999999996  8999998653

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.15  E-value=0.29  Score=42.80  Aligned_cols=112  Identities=18%  Similarity=0.282  Sum_probs=58.3

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh-hc-CCCceEEEcCCc-ccc----CCCC
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA-AF-LPRTKILASVDY-AVT----AGSD  107 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~-~~-~~~~~v~~t~~~-~al----~~aD  107 (350)
                      .++.+|.|||+|.-  .++..++......+|.++|+|++.++....-+.... .+ .++.++... |- +-+    +.-|
T Consensus        88 ~~pk~VLiiGgG~G--~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~-Da~~~l~~~~~~yD  164 (295)
T d1inla_          88 PNPKKVLIIGGGDG--GTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIA-NGAEYVRKFKNEFD  164 (295)
T ss_dssp             SSCCEEEEEECTTC--HHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEES-CHHHHGGGCSSCEE
T ss_pred             CCCceEEEecCCch--HHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhh-hHHHHHhcCCCCCC
Confidence            44679999999742  445666666555689999999987763322222211 11 245666643 42 222    2459


Q ss_pred             EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEE-cCC
Q 018760          108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV-ANP  156 (350)
Q Consensus       108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~-tNP  156 (350)
                      +||+-.-.|.. +..  . -..+.+.++.+.+.   .+|+|+++.= .+|
T Consensus       165 vIi~D~~dp~~-~~~--~-~L~t~efy~~~~~~---L~~~Gi~v~q~~sp  207 (295)
T d1inla_         165 VIIIDSTDPTA-GQG--G-HLFTEEFYQACYDA---LKEDGVFSAETEDP  207 (295)
T ss_dssp             EEEEEC--------------CCSHHHHHHHHHH---EEEEEEEEEECCCT
T ss_pred             EEEEcCCCCCc-Cch--h-hhccHHHHHHHHhh---cCCCcEEEEecCCh
Confidence            98886432211 000  0 01234444444433   3678875443 355

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=90.05  E-value=0.28  Score=38.79  Aligned_cols=41  Identities=24%  Similarity=0.373  Sum_probs=33.4

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      ++..+|+|+|+|.+|...+..+...+. .+|+.+|.+++|++
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~-~~Vi~~~~~~~rl~   67 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGA-KRIIAVDLNPDKFE   67 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEECSCGGGHH
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhh-chheeecchHHHHH
Confidence            344689999999999888877776654 58999999999886

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.85  E-value=0.28  Score=36.39  Aligned_cols=40  Identities=13%  Similarity=0.110  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCC-CCeEEEEeCCccch
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDF-VEELALVDAKADKL   75 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~-~~ev~L~D~~~~~l   75 (350)
                      .+.+|+|||+|.+|.-+|..|...+. ..+|.|++..+.-+
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL   59 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL   59 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence            35699999999999999977665442 24899999866544

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.80  E-value=0.24  Score=40.47  Aligned_cols=41  Identities=22%  Similarity=0.269  Sum_probs=32.9

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      ++..+|+|+|||.+|...+..+...+. ..|+.+|.+++|++
T Consensus        24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga-~~Vi~~d~~~~rl~   64 (195)
T d1kola2          24 GPGSTVYVAGAGPVGLAAAASARLLGA-AVVIVGDLNPARLA   64 (195)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-SEEEEEESCHHHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhcc-cceeeecccchhhH
Confidence            345689999999999887777666664 58999999998876

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.77  E-value=0.17  Score=38.61  Aligned_cols=24  Identities=21%  Similarity=0.458  Sum_probs=20.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCC
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDF   61 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~   61 (350)
                      |||+|.|+ |.||+.++..+...+.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~   25 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGH   25 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCC
Confidence            79999998 9999999887777664

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=89.75  E-value=0.21  Score=44.15  Aligned_cols=76  Identities=21%  Similarity=0.317  Sum_probs=45.3

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh--hc-CCCceEEEcCCc-c---c-cCCC
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA--AF-LPRTKILASVDY-A---V-TAGS  106 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~--~~-~~~~~v~~t~~~-~---a-l~~a  106 (350)
                      .++.+|.|||+|.  ..++..++......+|.++|+|++.++....-+....  .+ .++.++... |. +   . =+.-
T Consensus        76 ~~pk~VLiiG~G~--G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~-Da~~~l~~~~~~y  152 (312)
T d1uira_          76 PEPKRVLIVGGGE--GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVID-DARAYLERTEERY  152 (312)
T ss_dssp             SCCCEEEEEECTT--SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEES-CHHHHHHHCCCCE
T ss_pred             CCcceEEEeCCCc--hHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEc-hHHHHhhhcCCcc
Confidence            3467999999974  2345556665545699999999987763333332211  11 245666643 42 2   2 2456


Q ss_pred             CEEEEec
Q 018760          107 DLCIVTA  113 (350)
Q Consensus       107 DiVIi~~  113 (350)
                      |+||+-.
T Consensus       153 DvIi~D~  159 (312)
T d1uira_         153 DVVIIDL  159 (312)
T ss_dssp             EEEEEEC
T ss_pred             cEEEEeC
Confidence            9998764

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.30  E-value=0.063  Score=42.97  Aligned_cols=39  Identities=15%  Similarity=0.206  Sum_probs=27.7

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      +..++||+|||+|.+|...+..+...+-...+.++|...
T Consensus         4 ~~~k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~   42 (172)
T d1lc0a1           4 NSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVS   42 (172)
T ss_dssp             CCCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEEC
T ss_pred             CCCCcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence            456789999999999999887766543223466666543

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=89.29  E-value=0.17  Score=42.01  Aligned_cols=35  Identities=17%  Similarity=0.328  Sum_probs=29.9

Q ss_pred             eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccch
Q 018760           39 KISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKL   75 (350)
Q Consensus        39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l   75 (350)
                      ++.|.|| +.+|.++|..|++.|.  +|++.|++++..
T Consensus         3 ~alITGas~GIG~aiA~~la~~Ga--~V~i~~~~~~~~   38 (241)
T d1uaya_           3 SALVTGGASGLGRAAALALKARGY--RVVVLDLRREGE   38 (241)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSCCSS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCcccc
Confidence            4567798 8999999999999996  999999987644

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=89.12  E-value=1.1  Score=34.15  Aligned_cols=109  Identities=15%  Similarity=0.127  Sum_probs=62.4

Q ss_pred             CCeEEEEcC----ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcccc-CCCCEEEE
Q 018760           37 HTKISVIGT----GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVT-AGSDLCIV  111 (350)
Q Consensus        37 ~~KI~IIGA----G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al-~~aDiVIi  111 (350)
                      +..|+||||    +..|..++..|.+.++  .+.++-.++..-+     +   .      ......+.+++ ...|+|++
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~--~~~~v~~~~~~~~-----i---~------g~~~~~~l~~i~~~iD~v~v   76 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGY--RVLPVNPRFQGEE-----L---F------GEEAVASLLDLKEPVDILDV   76 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTC--EEEEECGGGTTSE-----E---T------TEECBSSGGGCCSCCSEEEE
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCC--CceEEEeccccce-----e---e------ceecccchhhccCCCceEEE
Confidence            458999998    4678888888999887  8888887653111     0   0      12223455555 45799999


Q ss_pred             ecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCC
Q 018760          112 TAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTN  181 (350)
Q Consensus       112 ~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~  181 (350)
                      +..                .+.+.++.+++.+...+++++.-+--.+-+... .+..|+   ++|+=.|.
T Consensus        77 ~~p----------------~~~v~~~v~~~~~~g~k~i~~q~G~~~~e~~~~-a~~~Gi---~vV~~~C~  126 (136)
T d1iuka_          77 FRP----------------PSALMDHLPEVLALRPGLVWLQSGIRHPEFEKA-LKEAGI---PVVADRCL  126 (136)
T ss_dssp             CSC----------------HHHHTTTHHHHHHHCCSCEEECTTCCCHHHHHH-HHHTTC---CEEESCCH
T ss_pred             ecc----------------HHHHHHHHHHHHhhCCCeEEEecCccCHHHHHH-HHHcCC---EEEcCCcc
Confidence            852                233333444444455566544333222223333 345677   67754454

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=89.01  E-value=0.39  Score=38.24  Aligned_cols=36  Identities=17%  Similarity=0.180  Sum_probs=29.1

Q ss_pred             CCCCeEEEEcCC-hhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           35 KRHTKISVIGTG-NVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        35 ~~~~KI~IIGAG-~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      ...++|+|||.+ .||.+++.+|.+.+.  .|..++...
T Consensus        35 l~GK~v~VIGrS~~VG~Pla~lL~~~ga--tVt~~h~~t   71 (166)
T d1b0aa1          35 TFGLNAVVIGASNIVGRPMSMELLLAGC--TTTVTHRFT   71 (166)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHTTTC--EEEEECSSC
T ss_pred             cccceEEEEeccccccHHHHHHHHHhhc--ccccccccc
Confidence            345799999995 689999999999885  788887644

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.99  E-value=0.21  Score=43.56  Aligned_cols=32  Identities=16%  Similarity=0.279  Sum_probs=28.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      .|+.|+|| |.+|++++..|++.|.  +|+.+|+.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~--~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC--EEEEEECC
Confidence            47888999 9999999999999996  99999974

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=88.94  E-value=0.35  Score=40.63  Aligned_cols=44  Identities=20%  Similarity=0.274  Sum_probs=33.3

Q ss_pred             CCeEEEEcC-C--hhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           37 HTKISVIGT-G--NVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        37 ~~KI~IIGA-G--~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      .+++.|+|| |  .+|.++|..|++.|.  +|++.|++++..+ .+.++.
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G~--~V~i~~~~~~~~~-~~~~~~   51 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKG-RVEEFA   51 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHH-HHHHHH
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcCC--EEEEEeCCHHHHH-HHHHHH
Confidence            457888888 4  488999999999995  8999999876444 334443

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=88.92  E-value=0.27  Score=41.58  Aligned_cols=38  Identities=24%  Similarity=0.284  Sum_probs=31.9

Q ss_pred             CCCeEEEEcC-Ch--hHHHHHHHHHhcCCCCeEEEEeCCccch
Q 018760           36 RHTKISVIGT-GN--VGMAIAQTILTQDFVEELALVDAKADKL   75 (350)
Q Consensus        36 ~~~KI~IIGA-G~--vG~~~a~~l~~~~~~~ev~L~D~~~~~l   75 (350)
                      +.+++.|.|| |+  +|.++|..|++.|.  +|+|.+++++++
T Consensus         5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga--~Vil~~~~~~~~   45 (268)
T d2h7ma1           5 DGKRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDRLRL   45 (268)
T ss_dssp             TTCEEEECCCSSTTCHHHHHHHHHHHTTC--EEEEEECSCHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHcCC--EEEEEeCChHHH
Confidence            4457888896 54  99999999999995  999999988755

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.88  E-value=1.7  Score=34.59  Aligned_cols=127  Identities=15%  Similarity=0.167  Sum_probs=63.0

Q ss_pred             CCCCCCCCCCccch-hhhhhccccCCCCCCCCCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHH
Q 018760            4 TPSGSSLGPGGLDL-TQTFFKPINHAAPPSPTKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDL   82 (350)
Q Consensus         4 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl   82 (350)
                      |++|- +++++.|. |+=+++.    ..   ..+..+|.=+|+|.=  .++..++...  .+|+.+|+++..++.....+
T Consensus        27 t~~gv-F~~~~~d~~t~lLi~~----l~---~~~~~~VLDiGcG~G--~~~~~la~~~--~~v~~iD~s~~~i~~a~~n~   94 (194)
T d1dusa_          27 TDSGV-FSYGKVDKGTKILVEN----VV---VDKDDDILDLGCGYG--VIGIALADEV--KSTTMADINRRAIKLAKENI   94 (194)
T ss_dssp             EETTS-TTTTSCCHHHHHHHHH----CC---CCTTCEEEEETCTTS--HHHHHHGGGS--SEEEEEESCHHHHHHHHHHH
T ss_pred             cCCCc-cCCCCcCHHHHHHHHh----CC---cCCCCeEEEEeecCC--hhHHHHHhhc--cccceeeeccccchhHHHHH
Confidence            44442 45666664 3333422    22   234568999999742  2334455544  48999999987665322222


Q ss_pred             HHHhhcC-CCceEEEcCCccccC--CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhcc-CCCeEEEEEcC
Q 018760           83 QHAAAFL-PRTKILASVDYAVTA--GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKY-SPDCILLIVAN  155 (350)
Q Consensus        83 ~~~~~~~-~~~~v~~t~~~~al~--~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN  155 (350)
                      .. .... ...++..+.-.+.+.  ..|+|+....  ...+          -+...++.+.+.+. .|+++++++.+
T Consensus        95 ~~-~~l~~~~i~~~~~d~~~~~~~~~fD~Ii~~~p--~~~~----------~~~~~~~l~~~~~~LkpgG~l~i~~~  158 (194)
T d1dusa_          95 KL-NNLDNYDIRVVHSDLYENVKDRKYNKIITNPP--IRAG----------KEVLHRIIEEGKELLKDNGEIWVVIQ  158 (194)
T ss_dssp             HH-TTCTTSCEEEEECSTTTTCTTSCEEEEEECCC--STTC----------HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HH-hCCccceEEEEEcchhhhhccCCceEEEEccc--EEec----------chhhhhHHHHHHHhcCcCcEEEEEEe
Confidence            22 1111 234444332234444  4688876422  1111          12223334444443 68887665543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.87  E-value=0.24  Score=38.71  Aligned_cols=39  Identities=21%  Similarity=0.323  Sum_probs=32.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      +..+|+|+|+|.+|...+..+...+.  +++.+|.++++++
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~--~v~~~~~~~~r~~   65 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGL--NVVAVDIGDEKLE   65 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTC--EEEEECSCHHHHH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCC--eEeccCCCHHHhh
Confidence            44689999999999988777777775  8999999998775

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.87  E-value=0.2  Score=43.86  Aligned_cols=113  Identities=8%  Similarity=0.058  Sum_probs=61.9

Q ss_pred             CeE-EEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCcc-----chHHHHHHHHHHhhcCCCceEEEc--CCcc----cc-
Q 018760           38 TKI-SVIGT-GNVGMAIAQTILTQDFVEELALVDAKAD-----KLRGEMLDLQHAAAFLPRTKILAS--VDYA----VT-  103 (350)
Q Consensus        38 ~KI-~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~-----~l~~~~~dl~~~~~~~~~~~v~~t--~~~~----al-  103 (350)
                      +|| .|+|| |.+|++++..|++.|.  +|+-+|+...     +++....+....  .....++...  +|.+    .+ 
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~   76 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAH--IEGNMKLHYGDLTDSTCLVKIIN   76 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC-----------CEEEEECCTTCHHHHHHHHH
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHhhchhhh--ccCCcEEEEeecCCchhhHHHHh
Confidence            489 68899 9999999999999996  9999998542     222111111110  0012333322  1221    22 


Q ss_pred             -CCCCEEEEecCCCcCc--cccHHHHHHhhHHHHHHHHhhhhccC--CCeEEEEEc
Q 018760          104 -AGSDLCIVTAGARQIA--GESRLNLLQRNLSLFKAIIPPLVKYS--PDCILLIVA  154 (350)
Q Consensus       104 -~~aDiVIi~~g~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~--p~a~viv~t  154 (350)
                       .+.|+|+.++......  .....+....|+.-...+.+.+.+++  +...+|.+|
T Consensus        77 ~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~S  132 (347)
T d1t2aa_          77 EVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAS  132 (347)
T ss_dssp             HHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred             hcccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEec
Confidence             3556777765543211  12344455667766677777777764  223455554

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=88.83  E-value=0.18  Score=43.06  Aligned_cols=33  Identities=21%  Similarity=0.548  Sum_probs=28.8

Q ss_pred             eEEEEcCChhHHHHHHHHHhc-CCCCeEEEEeCCcc
Q 018760           39 KISVIGTGNVGMAIAQTILTQ-DFVEELALVDAKAD   73 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~-~~~~ev~L~D~~~~   73 (350)
                      -|+|||||..|...|..|++. |+  +|+++|..+.
T Consensus        35 DViVIGaGpaGL~aA~~LA~~~G~--~V~vlE~~~~   68 (278)
T d1rp0a1          35 DVVVVGAGSAGLSAAYEISKNPNV--QVAIIEQSVS   68 (278)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTS--CEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHccCC--eEEEEecCCC
Confidence            499999999999999999874 76  9999998653

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=88.76  E-value=0.032  Score=49.19  Aligned_cols=127  Identities=17%  Similarity=0.306  Sum_probs=69.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHh----cCC-----CCeEEEEeCCccchHHHHHHHHHH-hhcC-CCceEEEcCCc-ccc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILT----QDF-----VEELALVDAKADKLRGEMLDLQHA-AAFL-PRTKILASVDY-AVT  103 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~----~~~-----~~ev~L~D~~~~~l~~~~~dl~~~-~~~~-~~~~v~~t~~~-~al  103 (350)
                      +..||+|.|||+.|..++..|+.    .|+     .++++++|...--.+. ..|+.+. ..+. ...+   ..+. +.+
T Consensus        24 ~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~-R~~l~~~k~~~a~~~~~---~~~l~~~i   99 (298)
T d1gq2a1          24 SDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKG-RASLTPEKEHFAHEHCE---MKNLEDIV   99 (298)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTT-CSSCCTTGGGGCBSCCC---CCCHHHHH
T ss_pred             HHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCC-CcccCHHHHHHHHHhhh---hhhhHHHh
Confidence            34699999999999998876653    343     2589999985311110 0112111 1111 1111   1122 222


Q ss_pred             C--CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcch---HHHHHHHHhCCCCCcEeee
Q 018760          104 A--GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDI---LTYVAWKLSGLPSNRVIGS  178 (350)
Q Consensus       104 ~--~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~---~~~~~~~~sg~~~~rviG~  178 (350)
                      +  ..+++|-+.+.+   |.-       +-+    +.+.|...+++.+|+-.|||..-   ...-+++.+.  -+-+|.+
T Consensus       100 ~~vkptvliG~s~~~---g~f-------t~e----vv~~ma~~~~~PIIFaLSNPt~~~E~~~~~a~~wt~--G~ai~As  163 (298)
T d1gq2a1         100 KDIKPTVLIGVAAIG---GAF-------TQQ----ILQDMAAFNKRPIIFALSNPTSKAECTAEQLYKYTE--GRGIFAS  163 (298)
T ss_dssp             HHHCCSEEEECSCCT---TCS-------CHH----HHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHHHTT--TCCEEEE
T ss_pred             hccChheeEeccccc---CcC-------CHH----HHHHHHhhCCCCEEEEccCCCCcCCCCHHHHhhhcc--cceEEee
Confidence            2  366767665533   211       223    34456677999999999999754   3344555552  2457777


Q ss_pred             cCCc
Q 018760          179 GTNL  182 (350)
Q Consensus       179 g~~l  182 (350)
                      |+-.
T Consensus       164 Gspf  167 (298)
T d1gq2a1         164 GSPF  167 (298)
T ss_dssp             SSCC
T ss_pred             cCCC
Confidence            6643

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=88.63  E-value=0.81  Score=38.66  Aligned_cols=44  Identities=16%  Similarity=0.326  Sum_probs=33.0

Q ss_pred             EEEE-cC-ChhHHHHHHHHHhcCCCCeEEEEeCC-ccchHHHHHHHHHH
Q 018760           40 ISVI-GT-GNVGMAIAQTILTQDFVEELALVDAK-ADKLRGEMLDLQHA   85 (350)
Q Consensus        40 I~II-GA-G~vG~~~a~~l~~~~~~~ev~L~D~~-~~~l~~~~~dl~~~   85 (350)
                      |+|| |+ +.+|..+|..|++.|.  +|++.|.+ ++.++....++...
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga--~V~i~~~~~~~~~~~~~~~l~~~   50 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSAAEANALSATLNAR   50 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCCHHHHHHHHHHHHhh
Confidence            5555 87 7999999999999995  89987764 45566556666543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=88.48  E-value=0.22  Score=40.65  Aligned_cols=31  Identities=29%  Similarity=0.344  Sum_probs=28.2

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      -|+|||+|..|.+.|..+++.|.  +|+|+|.+
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~--kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQ--KCALIEAK   34 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTC--CEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC--EEEEEecc
Confidence            48999999999999999999996  89999975

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.46  E-value=0.75  Score=38.43  Aligned_cols=44  Identities=18%  Similarity=0.292  Sum_probs=34.0

Q ss_pred             EEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccch-HHHHHHHHHH
Q 018760           40 ISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKL-RGEMLDLQHA   85 (350)
Q Consensus        40 I~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l-~~~~~dl~~~   85 (350)
                      ..|.|| +.+|.++|..|++.|.  +|++.|++.+++ +....++...
T Consensus         4 AlVTGas~GIG~aia~~la~~G~--~Vvi~~r~~~~~~~~~~~~~~~~   49 (266)
T d1mxha_           4 AVITGGARRIGHSIAVRLHQQGF--RVVVHYRHSEGAAQRLVAELNAA   49 (266)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHHHHHhh
Confidence            356688 7899999999999996  999999986644 4445555544

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.30  E-value=1.3  Score=33.44  Aligned_cols=61  Identities=20%  Similarity=0.303  Sum_probs=40.3

Q ss_pred             CCCeEEEEcC----ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCccccC-CCCEEE
Q 018760           36 RHTKISVIGT----GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYAVTA-GSDLCI  110 (350)
Q Consensus        36 ~~~KI~IIGA----G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~al~-~aDiVI  110 (350)
                      ++..|+||||    ++.|..+...|...+ ..+|+.+....+.+.+                +....+.+++. ..|+++
T Consensus         7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~-~g~v~pVnP~~~~i~G----------------~~~y~sl~dlp~~vDlvv   69 (129)
T d2csua1           7 NPKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIKEEEVQG----------------VKAYKSVKDIPDEIDLAI   69 (129)
T ss_dssp             SCSEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSSCSEETT----------------EECBSSTTSCSSCCSEEE
T ss_pred             CCCeEEEEccCCCCCCcHHHHHHHHHHcC-CCcEEEeccCccccCC----------------eEeecchhhcCCCCceEE
Confidence            3569999998    577877777776544 4588888876544332                12223454443 579999


Q ss_pred             Eec
Q 018760          111 VTA  113 (350)
Q Consensus       111 i~~  113 (350)
                      ++.
T Consensus        70 i~v   72 (129)
T d2csua1          70 IVV   72 (129)
T ss_dssp             ECS
T ss_pred             Eec
Confidence            985

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.27  E-value=0.26  Score=43.45  Aligned_cols=109  Identities=17%  Similarity=0.197  Sum_probs=55.5

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHh-hc-CCCceEEEcCCc-c----ccCCCC
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAA-AF-LPRTKILASVDY-A----VTAGSD  107 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~-~~-~~~~~v~~t~~~-~----al~~aD  107 (350)
                      .++.||.|||+|.  ..++..++....+.+|.++|+|++.++....-+.... .+ .++.++.. .|- +    .-+.-|
T Consensus       105 ~~pk~VLIiGgG~--G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i-~Da~~~l~~~~~~yD  181 (312)
T d2b2ca1         105 PDPKRVLIIGGGD--GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFC-GDGFEFLKNHKNEFD  181 (312)
T ss_dssp             SSCCEEEEESCTT--SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEEC-SCHHHHHHHCTTCEE
T ss_pred             CCCCeEEEeCCCc--hHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEE-chHHHHHHhCCCCCC
Confidence            3456999999975  2455666666656799999999987663222221111 11 14556653 342 2    223469


Q ss_pred             EEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEc
Q 018760          108 LCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVA  154 (350)
Q Consensus       108 iVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~t  154 (350)
                      +||+-.-.|..+  . ..  ..+.+.++.+.+.+   .|+++++.=+
T Consensus       182 vII~D~~dp~~~--~-~~--L~t~eFy~~~~~~L---~~~Gi~v~q~  220 (312)
T d2b2ca1         182 VIITDSSDPVGP--A-ES--LFGQSYYELLRDAL---KEDGILSSQG  220 (312)
T ss_dssp             EEEECCC------------------HHHHHHHHE---EEEEEEEEEC
T ss_pred             EEEEcCCCCCCc--c-hh--hhhHHHHHHHHhhc---CCCcEEEEec
Confidence            988864332211  1 11  12334444443333   6888765543

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=88.22  E-value=5.6  Score=32.34  Aligned_cols=138  Identities=17%  Similarity=0.184  Sum_probs=70.4

Q ss_pred             CCCeEEEEcCChhHHHH-----HHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC---c-c-----
Q 018760           36 RHTKISVIGTGNVGMAI-----AQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD---Y-A-----  101 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~-----a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~---~-~-----  101 (350)
                      ++.-|+++|.-.+|.+.     |..+...+  ..|.|+-.|.-|..+ ...|..-... ....+....+   . +     
T Consensus         8 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g--~kV~lit~Dt~R~gA-~eQL~~~a~~-l~v~~~~~~~~~d~~~~l~~~   83 (211)
T d2qy9a2           8 APFVILMVGVNGVGKTTTIGKLARQFEQQG--KSVMLAAGDTFRAAA-VEQLQVWGQR-NNIPVIAQHTGADSASVIFDA   83 (211)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHHHHTTT--CCEEEECCCTTCHHH-HHHHHHHHHH-TTCCEECCSTTCCHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEecccccccc-hhhhhhhhhh-cCCcccccccCCCHHHHHHHH
Confidence            34557788985566664     33444555  489999998877753 4444332211 1223332222   1 1     


Q ss_pred             ----ccCCCCEEEE-ecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCc--chHHHHHHHHhCCCCCc
Q 018760          102 ----VTAGSDLCIV-TAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPV--DILTYVAWKLSGLPSNR  174 (350)
Q Consensus       102 ----al~~aDiVIi-~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~--~~~~~~~~~~sg~~~~r  174 (350)
                          ..++.|+|++ ++|...     +.....+-+.-+.+..+.....+|...+++.+-..  +.+..+..++..++...
T Consensus        84 ~~~a~~~~~d~ilIDTaGr~~-----~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~~~~  158 (211)
T d2qy9a2          84 IQAAKARNIDVLIADTAGRLQ-----NKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTG  158 (211)
T ss_dssp             HHHHHHTTCSEEEECCCCCGG-----GHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHSCCCE
T ss_pred             HHHHHHcCCCEEEeccCCCcc-----ccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhccCCce
Confidence                1358899999 455322     11112222233333344444446777766664333  23444444444455567


Q ss_pred             EeeecCCccH
Q 018760          175 VIGSGTNLDS  184 (350)
Q Consensus       175 viG~g~~ld~  184 (350)
                      +| + |-+|.
T Consensus       159 lI-l-TKlDe  166 (211)
T d2qy9a2         159 IT-L-TKLDG  166 (211)
T ss_dssp             EE-E-ECCTT
T ss_pred             EE-E-eecCC
Confidence            76 5 66665

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.07  E-value=0.21  Score=45.14  Aligned_cols=32  Identities=25%  Similarity=0.594  Sum_probs=28.3

Q ss_pred             eEEEEcCChhHHHHHHHHHh------cCCCCeEEEEeCCc
Q 018760           39 KISVIGTGNVGMAIAQTILT------QDFVEELALVDAKA   72 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~------~~~~~ev~L~D~~~   72 (350)
                      -|+|||||..|++.|..|++      .|+  +|+|+|...
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl--~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDL--RVCLVEKAA   71 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCC--CEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCC--EEEEEcCCC
Confidence            49999999999999999987      676  999999854

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.06  E-value=0.22  Score=38.62  Aligned_cols=35  Identities=26%  Similarity=0.493  Sum_probs=30.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeC
Q 018760           34 TKRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDA   70 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~   70 (350)
                      ..+.++|.|||+|.+|..-+..|+..|.  +|++++.
T Consensus        10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA--~VtVvap   44 (150)
T d1kyqa1          10 QLKDKRILLIGGGEVGLTRLYKLMPTGC--KLTLVSP   44 (150)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTC--EEEEEEE
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEeC
Confidence            4456799999999999999999999995  8999964

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=87.86  E-value=0.11  Score=41.77  Aligned_cols=36  Identities=22%  Similarity=0.413  Sum_probs=26.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      |.||+|-|.|.+|+.+...+...+-+.-+.+-|+++
T Consensus         1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~   36 (171)
T d1cf2o1           1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRP   36 (171)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSC
T ss_pred             CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCc
Confidence            468999999999999998887776332333445554

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=87.78  E-value=5.9  Score=32.05  Aligned_cols=129  Identities=19%  Similarity=0.178  Sum_probs=66.6

Q ss_pred             eEEEEcCChhHHHH-----HHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcC---Ccc---------
Q 018760           39 KISVIGTGNVGMAI-----AQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASV---DYA---------  101 (350)
Q Consensus        39 KI~IIGAG~vG~~~-----a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~---~~~---------  101 (350)
                      -|.++|...+|.+.     |..+..++  ..|.|+..|.-|.-+ ...|..-.... ...+....   +.+         
T Consensus        12 vi~lvGp~GvGKTTTiaKLA~~~~~~g--~kV~lit~Dt~R~gA-~eQL~~~a~~l-~v~~~~~~~~~~~~~~~~~~~~~   87 (207)
T d1ls1a2          12 LWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAA-REQLRLLGEKV-GVPVLEVMDGESPESIRRRVEEK   87 (207)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHHHHHTT--CCEEEEECCSSCHHH-HHHHHHHHHHH-TCCEEECCTTCCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEecccccchH-HHHHHHHHHhc-CCccccccccchhhHHHHHHHHH
Confidence            36778987788764     34555666  489999998877654 33333211100 12222221   211         


Q ss_pred             -ccCCCCEEEE-ecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEE--cCCcchHHHHHHHHhCCCCCcEee
Q 018760          102 -VTAGSDLCIV-TAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIV--ANPVDILTYVAWKLSGLPSNRVIG  177 (350)
Q Consensus       102 -al~~aDiVIi-~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~--tNP~~~~~~~~~~~sg~~~~rviG  177 (350)
                       ...++|+|++ ++|....           +...+.++.+..+...|+-++++.  +.+-+.+..+...+..++...+| 
T Consensus        88 ~~~~~~d~vlIDTaGr~~~-----------d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~~~~~I-  155 (207)
T d1ls1a2          88 ARLEARDLILVDTAGRLQI-----------DEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLV-  155 (207)
T ss_dssp             HHHHTCCEEEEECCCCSSC-----------CHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTCCCEEE-
T ss_pred             HhhccCcceeecccccchh-----------hhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCCCCeeE-
Confidence             2578999999 4564331           233344444434444677655554  34555544332222123445665 


Q ss_pred             ecCCccH
Q 018760          178 SGTNLDS  184 (350)
Q Consensus       178 ~g~~ld~  184 (350)
                      + |-+|.
T Consensus       156 ~-TKlDe  161 (207)
T d1ls1a2         156 L-TKLDG  161 (207)
T ss_dssp             E-ECGGG
T ss_pred             E-eecCc
Confidence            4 55665

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=87.70  E-value=0.59  Score=39.29  Aligned_cols=74  Identities=20%  Similarity=0.198  Sum_probs=46.7

Q ss_pred             CCeEEEEcC-C--hhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------
Q 018760           37 HTKISVIGT-G--NVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------  100 (350)
Q Consensus        37 ~~KI~IIGA-G--~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------  100 (350)
                      .+++.|.|| |  .+|.++|..|++.|.  +|++.|++++..+ ....+.....   .......  ++.           
T Consensus         8 gK~alITGas~~~GIG~aiA~~la~~Ga--~V~i~~~~~~~~~-~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~   81 (256)
T d1ulua_           8 GKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRP-EAEKLAEALG---GALLFRADVTQDEELDALFAGVK   81 (256)
T ss_dssp             TCEEEEESCCCSSSHHHHHHHHHHHTTC--EEEEEESSGGGHH-HHHHHHHHTT---CCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHH-HHHHhhhccC---cccccccccCCHHHHHHHHHHHH
Confidence            346788898 4  599999999999995  8999999875443 3333333221   1112111  111           


Q ss_pred             cccCCCCEEEEecCCC
Q 018760          101 AVTAGSDLCIVTAGAR  116 (350)
Q Consensus       101 ~al~~aDiVIi~~g~~  116 (350)
                      +.+..-|++|..++..
T Consensus        82 ~~~g~iDilVnnag~~   97 (256)
T d1ulua_          82 EAFGGLDYLVHAIAFA   97 (256)
T ss_dssp             HHHSSEEEEEECCCCC
T ss_pred             HhcCCceEEEeccccc
Confidence            1235679999988753

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.58  E-value=0.19  Score=41.16  Aligned_cols=34  Identities=24%  Similarity=0.390  Sum_probs=29.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      .--|+|||+|..|.+.|..+++.+.  +|+|+|..+
T Consensus         5 ~yDviVIG~GpAGl~aA~~aa~~G~--kV~lie~~~   38 (233)
T d1v59a1           5 SHDVVIIGGGPAGYVAAIKAAQLGF--NTACVEKRG   38 (233)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC--cEEEEEecC
Confidence            3459999999999999999999996  999999754

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=87.58  E-value=0.024  Score=50.13  Aligned_cols=126  Identities=17%  Similarity=0.274  Sum_probs=67.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhc----CCC-----CeEEEEeCCccchHHHHHHHHHHh-hcCCCceEEEcCCc-cccC-
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQ----DFV-----EELALVDAKADKLRGEMLDLQHAA-AFLPRTKILASVDY-AVTA-  104 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~----~~~-----~ev~L~D~~~~~l~~~~~dl~~~~-~~~~~~~v~~t~~~-~al~-  104 (350)
                      ..||+|.|||+.|..++..|+..    |+-     +.++++|++---.+. ..|+.... .|.....  ..+++ +.++ 
T Consensus        25 d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~-r~d~~~~k~~~a~~~~--~~~~l~~~i~~  101 (308)
T d1o0sa1          25 QEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKN-RKEMNPRHVQFAKDMP--ETTSILEVIRA  101 (308)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTT-CSSCCGGGTTTCBSSC--CCCCHHHHHHH
T ss_pred             HcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCC-CcccCHHHHHHHHhcc--cCCcHHHHHhc
Confidence            45899999999999988776543    432     369999985321110 01222111 1111111  11222 2222 


Q ss_pred             -CCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchH---HHHHHHHhCCCCCcEeeecC
Q 018760          105 -GSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDIL---TYVAWKLSGLPSNRVIGSGT  180 (350)
Q Consensus       105 -~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~---~~~~~~~sg~~~~rviG~g~  180 (350)
                       .-+++|-+.+.+   |..       +    +++.+.|.+.+++.+|+-.|||..-.   .+-+++.++  -.-+|+.|+
T Consensus       102 ~kptvliG~s~~~---g~f-------t----~evv~~Ma~~~~~PIIFaLSNPtp~~E~~~eda~~~t~--G~ai~AtGS  165 (308)
T d1o0sa1         102 ARPGALIGASTVR---GAF-------N----EEVIRAMAEINERPIIFALSNPTSKAECTAEEAYTFTN--GAALYASGS  165 (308)
T ss_dssp             HCCSEEEECSSCT---TCS-------C----HHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHHTTT--SCCEEEESS
T ss_pred             cccccEEeccccc---CCC-------C----HHHHHHHHhhCCCcEEEEccCCCCCCCCCHHHHHhhcc--CcEEEecCC
Confidence             235666555433   211       2    23345666789999999999998643   344555542  134566654


Q ss_pred             C
Q 018760          181 N  181 (350)
Q Consensus       181 ~  181 (350)
                      -
T Consensus       166 p  166 (308)
T d1o0sa1         166 P  166 (308)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=87.54  E-value=0.25  Score=40.13  Aligned_cols=32  Identities=19%  Similarity=0.366  Sum_probs=28.8

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      =|+|||+|..|.+.|..+++.+.  +++++|..+
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~--kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGF--KTTCIEKRG   36 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTC--CEEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC--cEEEEEecC
Confidence            48999999999999999999996  899999764

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=87.43  E-value=0.26  Score=38.76  Aligned_cols=34  Identities=21%  Similarity=0.450  Sum_probs=26.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeC
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDA   70 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~   70 (350)
                      ..+|+|||+|.+|.-+|..|...+.-..|++.+.
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence            4589999999999999999998886334444443

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.30  E-value=0.6  Score=36.60  Aligned_cols=40  Identities=25%  Similarity=0.328  Sum_probs=32.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      +..+|.|+|+|.+|...+..+...+. ..|+..|.++++++
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~-~~vi~~~~~~~k~~   67 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGA-SRIIGVDINKDKFA   67 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECSCGGGHH
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhc-CceEEEcccHHHHH
Confidence            44589999999999988887777774 47888999998876

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.26  E-value=0.37  Score=40.51  Aligned_cols=40  Identities=13%  Similarity=0.336  Sum_probs=33.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchHH
Q 018760           38 TKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLRG   77 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~   77 (350)
                      +.|.|+|| +.+|..+|..|++.|....|++.++++++++.
T Consensus         4 KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~   44 (250)
T d1yo6a1           4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE   44 (250)
T ss_dssp             SEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHH
Confidence            46778899 89999999999999853478889999988763

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=87.20  E-value=0.41  Score=40.73  Aligned_cols=113  Identities=18%  Similarity=0.237  Sum_probs=68.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCC-ccccCCCCEEEEecC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVD-YAVTAGSDLCIVTAG  114 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~-~~al~~aDiVIi~~g  114 (350)
                      +..||++||.-    +....+.+.+  .++.++|+++...                 ... ... .+.+..||+||+++ 
T Consensus       121 ~g~kV~vIG~~----P~v~~l~~~~--~~~~VlE~~p~~g-----------------d~p-~~~~~~lLp~aD~viiTG-  175 (251)
T d2h1qa1         121 KGKKVGVVGHF----PHLESLLEPI--CDLSILEWSPEEG-----------------DYP-LPASEFILPECDYVYITC-  175 (251)
T ss_dssp             TTSEEEEESCC----TTHHHHHTTT--SEEEEEESSCCTT-----------------CEE-GGGHHHHGGGCSEEEEET-
T ss_pred             CCCEEEEEecc----hhHHHHHhcC--CcEEEEeCCCCCC-----------------CCC-chHHHHhhhcCCEEEEEe-
Confidence            34699999873    5566666666  4999999987411                 111 112 34689999999995 


Q ss_pred             CCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcchHHHHHHHHhCCCCCcEeeecCCccHHHHHHHHHH
Q 018760          115 ARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVDILTYVAWKLSGLPSNRVIGSGTNLDSSRFRFLLAD  193 (350)
Q Consensus       115 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~~~~~~~~sg~~~~rviG~g~~ld~~r~~~~la~  193 (350)
                                      ..++-+-.+.|-++|+++..+++.-|..-+.+.+.+ .|+  +-+=|+ ...|..++.+.+++
T Consensus       176 ----------------sTlvN~Tl~~LL~~~~~a~~vvl~GPS~p~~P~lf~-~Gv--~~lag~-~v~d~~~~~~~i~~  234 (251)
T d2h1qa1         176 ----------------ASVVDKTLPRLLELSRNARRITLVGPGTPLAPVLFE-HGL--QELSGF-MVKDNARAFRIVAG  234 (251)
T ss_dssp             ----------------HHHHHTCHHHHHHHTTTSSEEEEESTTCCCCGGGGG-TTC--SEEEEE-EESCHHHHHHHHTT
T ss_pred             ----------------chhhcCCHHHHHHhCCcCCEEEEECCCcccCHHHHh-cCC--ceEeEE-EEeCHHHHHHHHHc
Confidence                            233334445555567776444444465555554444 465  244344 56787777777764

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=87.19  E-value=0.26  Score=42.41  Aligned_cols=33  Identities=18%  Similarity=0.444  Sum_probs=29.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      .-|+|||+|..|.+.|..+++.|.  +|+|+|..+
T Consensus        17 ~DVlVIG~G~aGl~aA~~la~~G~--~V~lvEK~~   49 (308)
T d1y0pa2          17 VDVVVVGSGGAGFSAAISATDSGA--KVILIEKEP   49 (308)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            459999999999999999999996  899999865

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=86.96  E-value=0.062  Score=39.63  Aligned_cols=34  Identities=6%  Similarity=0.062  Sum_probs=25.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      +.+||+|||+|+-|.-+|..|+...  .++++.-+.
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~a--k~v~~~~~r   64 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVA--KHPIYQSLL   64 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTS--CSSEEEECT
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhc--CEEEEEEec
Confidence            3579999999999999999887654  455555553

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=86.89  E-value=6.7  Score=31.80  Aligned_cols=137  Identities=17%  Similarity=0.186  Sum_probs=66.8

Q ss_pred             CCCCCeEEEEcCChhHHHH-----HHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCcc-------
Q 018760           34 TKRHTKISVIGTGNVGMAI-----AQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDYA-------  101 (350)
Q Consensus        34 ~~~~~KI~IIGAG~vG~~~-----a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~~-------  101 (350)
                      .+++.-|.++|.-.+|.+.     |..+..++  ..|.|+-.|..|..+ ...|+.-... ....+....+.+       
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g--~kV~lit~Dt~R~ga-~eQL~~~a~~-l~v~~~~~~~~~~~~~~~~   84 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLAYFYKKKG--FKVGLVGADVYRPAA-LEQLQQLGQQ-IGVPVYGEPGEKDVVGIAK   84 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHHHHHHHTT--CCEEEEECCCSSHHH-HHHHHHHHHH-HTCCEECCTTCCCHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCC--CceEEEEeeccccch-hHHHHHhccc-cCcceeecccchhhhHHHH
Confidence            4455668888985566653     34555666  379999998877754 3344322111 122333222221       


Q ss_pred             ------ccCCCCEEEE-ecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEEEcCCcc--hHHHHHHHHhCCCC
Q 018760          102 ------VTAGSDLCIV-TAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLIVANPVD--ILTYVAWKLSGLPS  172 (350)
Q Consensus       102 ------al~~aDiVIi-~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~--~~~~~~~~~sg~~~  172 (350)
                            ...++|+|++ ++|.....  +.       ...+.++........|+-++++++-..+  .+..+...+...+.
T Consensus        85 ~a~~~~~~~~~d~IlIDTaGr~~~~--~~-------~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~~~~  155 (211)
T d1j8yf2          85 RGVEKFLSEKMEIIIVDTAGRHGYG--EE-------AALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKI  155 (211)
T ss_dssp             HHHHHHHHTTCSEEEEECCCSCCTT--CH-------HHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHHCTT
T ss_pred             HHHHHhhccCCceEEEecCCcCccc--hh-------hHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhcccCc
Confidence                  1478899999 56643211  11       1112222222333357766666644433  23333333333444


Q ss_pred             CcEeeecCCccHH
Q 018760          173 NRVIGSGTNLDSS  185 (350)
Q Consensus       173 ~rviG~g~~ld~~  185 (350)
                      +.+| + |-+|..
T Consensus       156 ~~lI-~-TKlDet  166 (211)
T d1j8yf2         156 GTII-I-TKMDGT  166 (211)
T ss_dssp             EEEE-E-ECTTSC
T ss_pred             ceEE-E-ecccCC
Confidence            5665 5 666653

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=86.54  E-value=0.34  Score=39.87  Aligned_cols=32  Identities=22%  Similarity=0.385  Sum_probs=29.1

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      -|+|||+|..|.+.|..+.+.+.  +++|+|..+
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~--~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGL--KVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC--eEEEEeccC
Confidence            48999999999999999999996  999999765

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.19  E-value=0.5  Score=39.59  Aligned_cols=39  Identities=13%  Similarity=0.297  Sum_probs=32.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHh---cCCCCeEEEEeCCccchHHH
Q 018760           38 TKISVIGT-GNVGMAIAQTILT---QDFVEELALVDAKADKLRGE   78 (350)
Q Consensus        38 ~KI~IIGA-G~vG~~~a~~l~~---~~~~~ev~L~D~~~~~l~~~   78 (350)
                      ++|.|.|| +.+|..+|..|++   .+  .+|++.++++++++..
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g--~~V~~~~r~~~~~~~~   45 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPP--QHLFTTCRNREQAKEL   45 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCC--SEEEEEESCTTSCHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCC--CEEEEEECCHHHHHHH
Confidence            35999999 8999999988875   34  4899999999988743

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=86.05  E-value=0.32  Score=39.71  Aligned_cols=32  Identities=25%  Similarity=0.304  Sum_probs=29.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      ..|.|||+|..|...|..+++.|.  +|+|+|.+
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~--~V~liE~~   37 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGI--PTVLVEGQ   37 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTC--CEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCC--cEEEEecC
Confidence            459999999999999999999996  99999975

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.00  E-value=0.31  Score=40.11  Aligned_cols=31  Identities=26%  Similarity=0.395  Sum_probs=28.0

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      -|+|||+|..|.+.|..+++.|+  +++++|..
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~--kV~viE~~   35 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDK--KVMVLDFV   35 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCC--CEEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC--eEEEEecc
Confidence            37899999999999999999996  89999964

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=85.64  E-value=0.9  Score=35.43  Aligned_cols=73  Identities=15%  Similarity=0.200  Sum_probs=44.5

Q ss_pred             CCCeEEEEcC---ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEE
Q 018760           36 RHTKISVIGT---GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIV  111 (350)
Q Consensus        36 ~~~KI~IIGA---G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi  111 (350)
                      +..||+++|=   |.|..+++..+..-+. ..++++-...........+..+..    ...+..+.|. +++++||+|..
T Consensus         3 ~gl~i~~vGD~~nsrv~~Sli~~l~~~~~-~~~~~~~P~~~~~~~~~~~~~~~~----~~~~~~~~d~~~a~~~aDvvy~   77 (160)
T d1ekxa2           3 DNLHVAMVGDLKYGRTVHSLTQALAKFDG-NRFYFIAPDALAMPQYILDMLDEK----GIAWSLHSSIEEVMAEVDILYM   77 (160)
T ss_dssp             SSCEEEEESCTTTCHHHHHHHHHHTTSSS-CEEEEECCGGGCCCHHHHHHHHHT----TCCEEECSCSTTTGGGCSEEEE
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHHHHcCC-CeEEeeccchhhhhHHHHHHHhhh----ccccccccCHHHHhCcCceEEe
Confidence            4579999996   4477777766665543 356776654333322233333322    3356556776 68999999886


Q ss_pred             ec
Q 018760          112 TA  113 (350)
Q Consensus       112 ~~  113 (350)
                      ..
T Consensus        78 ~~   79 (160)
T d1ekxa2          78 TR   79 (160)
T ss_dssp             CC
T ss_pred             ec
Confidence            53

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=85.28  E-value=0.4  Score=38.78  Aligned_cols=32  Identities=25%  Similarity=0.333  Sum_probs=28.6

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      =|+|||+|..|.+.|..+++.++  ++.++|..+
T Consensus         5 DviIIGgGpAGl~aA~~aar~G~--~V~viE~~~   36 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQLGL--KTALIEKYK   36 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTC--CEEEEECCB
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC--eEEEEeccc
Confidence            48999999999999999999996  899999753

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=85.23  E-value=0.39  Score=37.71  Aligned_cols=30  Identities=20%  Similarity=0.361  Sum_probs=26.8

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeC
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDA   70 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~   70 (350)
                      -|+|||+|..|...|..+.+.++  +++++|.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~--~v~iie~   32 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGI--RTGLMGE   32 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTC--CEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCC--eEEEEEE
Confidence            48999999999999999999996  7889885

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.84  E-value=1.2  Score=35.65  Aligned_cols=65  Identities=18%  Similarity=0.314  Sum_probs=44.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEec
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVTA  113 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~~  113 (350)
                      +.+||+|||-|+=|.+-|..|-.+|+  +|++ -..+.... .  +.....    ..++.   +. |+.+.||+|.+..
T Consensus        15 k~k~IaViGYGsQG~AhAlNLrDSG~--~V~V-GLr~gs~s-~--~~A~~~----Gf~v~---~~~eA~~~aDiim~L~   80 (182)
T d1np3a2          15 QGKKVAIIGYGSQGHAHACNLKDSGV--DVTV-GLRSGSAT-V--AKAEAH----GLKVA---DVKTAVAAADVVMILT   80 (182)
T ss_dssp             HTSCEEEECCSHHHHHHHHHHHHTTC--CEEE-ECCTTCHH-H--HHHHHT----TCEEE---CHHHHHHTCSEEEECS
T ss_pred             CCCEEEEEeeCcHhHHHHhhhhhcCC--CEEE-EcCCCCcc-H--HHHhhh----ccccc---cHHHHhhhcCeeeeec
Confidence            45799999999999999999999997  6555 44333211 1  112222    23453   34 7899999999984

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=84.66  E-value=0.76  Score=36.10  Aligned_cols=39  Identities=21%  Similarity=0.395  Sum_probs=32.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      ...|.|+|+|.+|...+..+...+. ..|+..|.+++|++
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~-~~vv~~~~~~~k~~   71 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTP-ATVIALDVKEEKLK   71 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCC-CEEEEEESSHHHHH
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcC-cccccccchhHHHH
Confidence            3579999999999998887776664 47888999998776

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=84.46  E-value=0.88  Score=31.19  Aligned_cols=40  Identities=18%  Similarity=0.348  Sum_probs=33.1

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           35 KRHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        35 ~~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      ++..+|.|.|+ |.||....+.+...+.  +|+..-.++++.+
T Consensus        30 ~~~~~vlI~gasGgVG~~aiQlak~~G~--~Vi~~t~s~~k~~   70 (77)
T d1o8ca2          30 PQDGEIVVTGASGGVGSTAVALLHKLGY--QVVAVSGRESTHE   70 (77)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHHHHHTTC--CEEEEESCGGGHH
T ss_pred             cCCCcEEEEeCCCcHHHHHHHHHHHcCC--eEEEEECCHHHHH
Confidence            34568999998 9999999888787785  8888888888776

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=84.35  E-value=0.58  Score=39.52  Aligned_cols=100  Identities=9%  Similarity=0.106  Sum_probs=58.2

Q ss_pred             eEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEe-CCccchHHHHHHHHHHhhcCCCceEEEc--CCc-----------ccc
Q 018760           39 KISVIGT-GNVGMAIAQTILTQDFVEELALVD-AKADKLRGEMLDLQHAAAFLPRTKILAS--VDY-----------AVT  103 (350)
Q Consensus        39 KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D-~~~~~l~~~~~dl~~~~~~~~~~~v~~t--~~~-----------~al  103 (350)
                      .+.|.|| +.+|.++|..|++.|.  +|++.+ .+++.++.....++...   .......+  +|.           +.+
T Consensus         8 ~alITGas~GIG~aia~~la~~G~--~Vvi~~~~~~~~~~~~~~~~~~~g---~~~~~~~~D~~~~~~v~~~~~~~~~~~   82 (259)
T d1ja9a_           8 VALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG---AQGVAIQADISKPSEVVALFDKAVSHF   82 (259)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT---CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHHcC---CCceEecCCCCCHHHHHHHHHHHHHHc
Confidence            5566688 8999999999999996  888855 55565665555555432   11211111  111           123


Q ss_pred             CCCCEEEEecCCCcC-c--cccHH---HHHHhh----HHHHHHHHhhhhc
Q 018760          104 AGSDLCIVTAGARQI-A--GESRL---NLLQRN----LSLFKAIIPPLVK  143 (350)
Q Consensus       104 ~~aDiVIi~~g~~~~-~--g~~r~---~~~~~n----~~i~~~i~~~i~~  143 (350)
                      ..-|++|..+|.... +  ..+..   ..+..|    ....+...+.|++
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~  132 (259)
T d1ja9a_          83 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRR  132 (259)
T ss_dssp             SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEE
T ss_pred             CCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhc
Confidence            467999999886421 1  11211   122223    4566777777765

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=84.32  E-value=0.42  Score=41.47  Aligned_cols=33  Identities=24%  Similarity=0.478  Sum_probs=29.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      .-|+|||+|..|.+.|..+++.|.  +|+|++..+
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G~--~V~llEk~~   56 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAGA--KVILLEKEP   56 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred             ceEEEECcCHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            459999999999999999999996  899999865

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.15  E-value=3.2  Score=33.65  Aligned_cols=77  Identities=14%  Similarity=0.077  Sum_probs=42.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-c---ccCCCCEEEE
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-A---VTAGSDLCIV  111 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~---al~~aDiVIi  111 (350)
                      +..+|.-||+|+ |...+......+....|+.+|++++.++.....+.+.. . .+..+. ..|. +   .-...|+|++
T Consensus        75 ~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~-~-~n~~~~-~~d~~~~~~~~~~fD~I~~  150 (213)
T d1dl5a1          75 KGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG-I-ENVIFV-CGDGYYGVPEFSPYDVIFV  150 (213)
T ss_dssp             TTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT-C-CSEEEE-ESCGGGCCGGGCCEEEEEE
T ss_pred             ccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc-c-cccccc-cCchHHccccccchhhhhh
Confidence            457999999975 33333221122322489999999987775444444322 1 122232 3343 2   1234699988


Q ss_pred             ecCCC
Q 018760          112 TAGAR  116 (350)
Q Consensus       112 ~~g~~  116 (350)
                      .+...
T Consensus       151 ~~~~~  155 (213)
T d1dl5a1         151 TVGVD  155 (213)
T ss_dssp             CSBBS
T ss_pred             hccHH
Confidence            76544

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.12  E-value=1  Score=35.42  Aligned_cols=77  Identities=19%  Similarity=0.157  Sum_probs=42.4

Q ss_pred             CCCeEEEEcCC-hhHHHHHHHHHhcCCCCeEEEEeCCccchH-HHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEEe
Q 018760           36 RHTKISVIGTG-NVGMAIAQTILTQDFVEELALVDAKADKLR-GEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIVT  112 (350)
Q Consensus        36 ~~~KI~IIGAG-~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~-~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi~  112 (350)
                      +..||+++|=+ +|-.+++..+..-|.  +++++-...-... ........... ....++..+.|. +++++||+|...
T Consensus         3 ~gl~I~~vGD~~nV~~Sli~~~~~~g~--~~~~~~P~~~~p~~~~~~~~~~~~~-~~~~~i~~~~d~~~~~~~advi~~~   79 (170)
T d1otha2           3 KGLTLSWIGDGNNILHSIMMSAAKFGM--HLQAATPKGYEPDASVTKLAEQYAK-ENGTKLLLTNDPLEAAHGGNVLITD   79 (170)
T ss_dssp             TTCEEEEESCSSHHHHHHHTTTGGGTC--EEEEECCTTCCCCHHHHHHHHHHHH-HHTCCEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCEEEEEcCchhHHHHHHHHHHHcCC--EEEEEeccccCCchHHHHHHHHHHh-ccCCEEEEEcCHHHHHhhhhheeee
Confidence            56799999985 333333333333454  7888776432211 11222221110 013456667776 679999999987


Q ss_pred             cCC
Q 018760          113 AGA  115 (350)
Q Consensus       113 ~g~  115 (350)
                      .-.
T Consensus        80 ~~~   82 (170)
T d1otha2          80 TWI   82 (170)
T ss_dssp             CSS
T ss_pred             cee
Confidence            543

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.91  E-value=0.55  Score=37.92  Aligned_cols=32  Identities=19%  Similarity=0.264  Sum_probs=28.4

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      -|.|||+|..|...|..+++.+.  +++++|...
T Consensus         5 DviVIG~GpaGl~aA~~aar~G~--kV~vIEk~~   36 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQLGQ--KVTIVEKGN   36 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC--CEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC--EEEEEecCC
Confidence            48899999999999999999996  899999753

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.70  E-value=1.5  Score=36.18  Aligned_cols=24  Identities=29%  Similarity=0.578  Sum_probs=20.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHhc
Q 018760           36 RHTKISVIGTGNVGMAIAQTILTQ   59 (350)
Q Consensus        36 ~~~KI~IIGAG~vG~~~a~~l~~~   59 (350)
                      +..+|+|||+|+|+.-+|..++..
T Consensus        38 ~gk~VvVIGgGNVAlD~aR~l~r~   61 (225)
T d1cjca1          38 SCDTAVILGQGNVALDVARILLTP   61 (225)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSC
T ss_pred             cCceEEEECCchhHHHHHHHHhcC
Confidence            357999999999999999888764

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.67  E-value=0.57  Score=37.93  Aligned_cols=31  Identities=29%  Similarity=0.355  Sum_probs=27.9

Q ss_pred             EEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           40 ISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        40 I~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      |+|||+|..|...|..+++.+.  +++++|.+.
T Consensus         6 viIIG~GpaG~~aA~~aar~G~--kV~vIEk~~   36 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGA--RAAVVESHK   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC--CEEEEESSC
T ss_pred             EEEECCCHHHHHHHHHHHHCCC--EEEEEeccC
Confidence            7899999999999999999996  899999743

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=83.60  E-value=1.5  Score=33.96  Aligned_cols=61  Identities=11%  Similarity=0.172  Sum_probs=40.5

Q ss_pred             CCCeEEEEcC---ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEE
Q 018760           36 RHTKISVIGT---GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIV  111 (350)
Q Consensus        36 ~~~KI~IIGA---G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi  111 (350)
                      +.+||+++|=   ++|..+++..+..-|.  +++++....  +.       .     ....+..+.+. ++++++|+|..
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~--~~~i~~P~~--~~-------~-----~~~~~~~~~~~~ea~~~aDviy~   65 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGA--RVLFSGPSE--WQ-------D-----EENTFGTYVSMDEAVESSDVVML   65 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCC--cccccCCch--hh-------c-----cccceeEEEechhccccCceeee
Confidence            3579999996   5789998888887775  777766532  11       0     01122233454 78999999887


Q ss_pred             e
Q 018760          112 T  112 (350)
Q Consensus       112 ~  112 (350)
                      .
T Consensus        66 ~   66 (151)
T d2at2a2          66 L   66 (151)
T ss_pred             e
Confidence            6

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=83.59  E-value=1.5  Score=34.67  Aligned_cols=43  Identities=19%  Similarity=0.321  Sum_probs=30.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHH
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~   83 (350)
                      |||+|=|.|.+|+.+...+...++  +|+.+.-- ..++..+.-|+
T Consensus         1 ikigINGfGRIGR~~~R~l~~~~i--~iv~INd~-~~~~~~ayLl~   43 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSRGV--EVALINDL-TDNKTLAHLLK   43 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTC--CEEEEECS-SCHHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCC--EEEEECCC-cchhhhhheee
Confidence            699999999999999888887775  66665532 23554443333

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.55  E-value=2  Score=36.71  Aligned_cols=110  Identities=16%  Similarity=0.207  Sum_probs=57.7

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHH--------h-hcCCCceEEEcCCc----c
Q 018760           35 KRHTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHA--------A-AFLPRTKILASVDY----A  101 (350)
Q Consensus        35 ~~~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~--------~-~~~~~~~v~~t~~~----~  101 (350)
                      .++.+|.|||+|.=  .++..++..+. .+|.++|+|++.++. +.+....        . ...++.++.. .|-    +
T Consensus        71 ~~p~~vLiiG~G~G--~~~~~~l~~~~-~~v~~VEiD~~Vi~~-a~~~f~~~~~~~~~~~~~~d~rv~i~~-~Da~~~l~  145 (276)
T d1mjfa_          71 PKPKRVLVIGGGDG--GTVREVLQHDV-DEVIMVEIDEDVIMV-SKDLIKIDNGLLEAMLNGKHEKAKLTI-GDGFEFIK  145 (276)
T ss_dssp             SCCCEEEEEECTTS--HHHHHHTTSCC-SEEEEEESCHHHHHH-HHHHTCTTTTHHHHHHTTCCSSEEEEE-SCHHHHHH
T ss_pred             CCCceEEEecCCch--HHHHHHHHhCC-ceEEEecCCHHHHHH-HHHhhhhccchhhhhhccCCCCceEEE-ChHHHHHh
Confidence            45679999999742  33455555554 689999999986652 2222110        0 0113456654 341    2


Q ss_pred             ccCCCCEEEEecCCCcCccccHHHHHHhhHHHHHHHHhhhhccCCCeEEEE-EcCCc
Q 018760          102 VTAGSDLCIVTAGARQIAGESRLNLLQRNLSLFKAIIPPLVKYSPDCILLI-VANPV  157 (350)
Q Consensus       102 al~~aDiVIi~~g~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~viv-~tNP~  157 (350)
                      .-+.-|+||+-.-.|..+.   .  -..+.+.++.+.+.+   .|+|+++. ..+|-
T Consensus       146 ~~~~yDvIi~D~~~~~~~~---~--~L~t~eF~~~~~~~L---~~~Gv~v~q~~s~~  194 (276)
T d1mjfa_         146 NNRGFDVIIADSTDPVGPA---K--VLFSEEFYRYVYDAL---NNPGIYVTQAGSVY  194 (276)
T ss_dssp             HCCCEEEEEEECCCCC----------TTSHHHHHHHHHHE---EEEEEEEEEEEETT
T ss_pred             ccCCCCEEEEeCCCCCCCc---c--cccCHHHHHhhHhhc---CCCceEEEecCCcc
Confidence            2356799998653332111   0  112345555554333   67887543 44554

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=83.27  E-value=0.57  Score=39.33  Aligned_cols=30  Identities=37%  Similarity=0.539  Sum_probs=27.8

Q ss_pred             EEEEcCChhHHHHHHHHHhcCCCCeEEEEeCC
Q 018760           40 ISVIGTGNVGMAIAQTILTQDFVEELALVDAK   71 (350)
Q Consensus        40 I~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~   71 (350)
                      +.|||+|..|...|..+++.|.  +|.|+|.+
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~--~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNA--KVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC--CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC--eEEEEecC
Confidence            7899999999999999999996  99999975

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.75  E-value=0.73  Score=35.24  Aligned_cols=22  Identities=27%  Similarity=0.736  Sum_probs=19.5

Q ss_pred             eEEEEcC-ChhHHHHHHHHHhcC
Q 018760           39 KISVIGT-GNVGMAIAQTILTQD   60 (350)
Q Consensus        39 KI~IIGA-G~vG~~~a~~l~~~~   60 (350)
                      ||+|+|| |.||+.++..+.+.+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~   23 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAAD   23 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHST
T ss_pred             CEEEECCCCHHHHHHHHHHHhCC
Confidence            8999997 999999998877765

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.67  E-value=0.69  Score=36.95  Aligned_cols=39  Identities=18%  Similarity=0.312  Sum_probs=31.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHhcCCCCeEEEEeCCccchH
Q 018760           36 RHTKISVIGT-GNVGMAIAQTILTQDFVEELALVDAKADKLR   76 (350)
Q Consensus        36 ~~~KI~IIGA-G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~   76 (350)
                      +..+|.|.|| |.||+...+.....|.  +|+-...++++.+
T Consensus        31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga--~Viat~~s~~k~~   70 (176)
T d1xa0a2          31 ERGPVLVTGATGGVGSLAVSMLAKRGY--TVEASTGKAAEHD   70 (176)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHTTC--CEEEEESCTTCHH
T ss_pred             CCCEEEEEeccchHHHHHHHHHHHcCC--ceEEecCchHHHH
Confidence            3457999997 9999998888878885  7888888888775

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.53  E-value=0.094  Score=42.29  Aligned_cols=78  Identities=19%  Similarity=0.137  Sum_probs=46.8

Q ss_pred             CCCCCeEEEEcCC-hhHHHHHHHHHhcCCCCeEEEEeCCccchHHH--HHHHHHHhhcCCCceEEE-cCC-c-cccCCCC
Q 018760           34 TKRHTKISVIGTG-NVGMAIAQTILTQDFVEELALVDAKADKLRGE--MLDLQHAAAFLPRTKILA-SVD-Y-AVTAGSD  107 (350)
Q Consensus        34 ~~~~~KI~IIGAG-~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~--~~dl~~~~~~~~~~~v~~-t~~-~-~al~~aD  107 (350)
                      ..+.++++|||.+ -||.+++.+|++.+.  .|.+++++.......  ...+.+.    ....+.. +.+ . +....||
T Consensus        26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~ga--TVt~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~lk~~~~~aD   99 (171)
T d1edza1          26 RLYGKKCIVINRSEIVGRPLAALLANDGA--TVYSVDVNNIQKFTRGESLKLNKH----HVEDLGEYSEDLLKKCSLDSD   99 (171)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSC--EEEEECSSEEEEEESCCCSSCCCC----EEEEEEECCHHHHHHHHHHCS
T ss_pred             CCCCCEEEEECCccccHHHHHHHHHHCCC--EEEEeccccccccccccceeeeee----ccccccccchhHHhhccccCC
Confidence            4456799999986 669999999999885  788888754221100  0000000    0011211 111 2 3466899


Q ss_pred             EEEEecCCCc
Q 018760          108 LCIVTAGARQ  117 (350)
Q Consensus       108 iVIi~~g~~~  117 (350)
                      +||.++|.|.
T Consensus       100 IvIsavG~p~  109 (171)
T d1edza1         100 VVITGVPSEN  109 (171)
T ss_dssp             EEEECCCCTT
T ss_pred             EEEEccCCCc
Confidence            9999988764

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.40  E-value=1.1  Score=36.70  Aligned_cols=48  Identities=31%  Similarity=0.416  Sum_probs=29.8

Q ss_pred             CCCCccch-----hhhhhccccCCCCCC---CCCCCCeEEEEcCChhHHHHHHHHH
Q 018760           10 LGPGGLDL-----TQTFFKPINHAAPPS---PTKRHTKISVIGTGNVGMAIAQTIL   57 (350)
Q Consensus        10 ~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~KI~IIGAG~vG~~~a~~l~   57 (350)
                      ||..|+++     +.-|..-++......   ......+|+|||.|+|+.-+|..++
T Consensus         4 L~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll   59 (216)
T d1lqta1           4 LNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILL   59 (216)
T ss_dssp             CCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCCchhHhhhhhhc
Confidence            55556653     455665444221111   1223469999999999999987776

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=82.16  E-value=2.3  Score=33.57  Aligned_cols=77  Identities=18%  Similarity=0.215  Sum_probs=46.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEE-eCCccchHHHHHHHHHHhhcC---------------CCceEEEc--CC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALV-DAKADKLRGEMLDLQHAAAFL---------------PRTKILAS--VD   99 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~-D~~~~~l~~~~~dl~~~~~~~---------------~~~~v~~t--~~   99 (350)
                      .||+|=|-|.+|+.+...+++.++  +++.+ |...+ ++..+.-|++-..+.               ...++..+  .+
T Consensus         1 ~kIgINGfGRIGR~~~R~~~~~~~--~ivaINd~~~~-~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~   77 (169)
T d1dssg1           1 SKIGINGFGRIGRLVLRAALEMGA--QVVAVNDPFIA-LEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMK   77 (169)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTC--CEEEEECTTSC-HHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSS
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCC--cEEEECCCCcC-HHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCC
Confidence            389999999999999998888875  56555 43332 443343444322110               12233332  23


Q ss_pred             cccc----CCCCEEEEecCCCc
Q 018760          100 YAVT----AGSDLCIVTAGARQ  117 (350)
Q Consensus       100 ~~al----~~aDiVIi~~g~~~  117 (350)
                      ++.+    .++|+||.|.|.-.
T Consensus        78 p~~i~W~~~gvD~ViEcTG~f~   99 (169)
T d1dssg1          78 PENIPWSKAGAEYIVESTGVFT   99 (169)
T ss_dssp             GGGCCHHHHTCCEEEECSSSCC
T ss_pred             hHHCCccccCCCEEEecCceEc
Confidence            3433    38999999987543

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.12  E-value=0.55  Score=35.68  Aligned_cols=37  Identities=19%  Similarity=0.269  Sum_probs=28.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhc--CCCCeEEEEeCCcc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQ--DFVEELALVDAKAD   73 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~--~~~~ev~L~D~~~~   73 (350)
                      ..+|+|||+|.+|.-+|..|...  .+..+|++++..+.
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            45899999999999998877642  12249999998653

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=82.11  E-value=1.8  Score=33.34  Aligned_cols=72  Identities=19%  Similarity=0.291  Sum_probs=45.3

Q ss_pred             CCCeEEEEcC---ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEE
Q 018760           36 RHTKISVIGT---GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIV  111 (350)
Q Consensus        36 ~~~KI~IIGA---G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi  111 (350)
                      +..||++||=   ++|..+++..+..-|.  +++++-...-.......+.....    ...+..+.|. ++++++|+|..
T Consensus         3 ~gl~i~~vGD~~~srV~~Sli~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~----~~~~~~~~d~~~av~~aDvvy~   76 (157)
T d1ml4a2           3 DGLKIGLLGDLKYGRTVHSLAEALTFYDV--ELYLISPELLRMPRHIVEELREK----GMKVVETTTLEDVIGKLDVLYV   76 (157)
T ss_dssp             SSEEEEEESCTTTCHHHHHHHHHGGGSCE--EEEEECCGGGCCCHHHHHHHHHT----TCCEEEESCTHHHHTTCSEEEE
T ss_pred             CCCEEEEEcCCccChHHHHHHHHHHhcCC--cEEEEccchhhcchHHHHHHHhh----cccceeecCHHHhhccCcEEEe
Confidence            4579999996   6788888887777674  78887664322222111111111    2345556676 68999998777


Q ss_pred             ec
Q 018760          112 TA  113 (350)
Q Consensus       112 ~~  113 (350)
                      ..
T Consensus        77 ~~   78 (157)
T d1ml4a2          77 TR   78 (157)
T ss_dssp             CC
T ss_pred             ec
Confidence            63

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=81.95  E-value=2.4  Score=33.42  Aligned_cols=78  Identities=17%  Similarity=0.161  Sum_probs=46.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcC---------------CCceEEEc--CCc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFL---------------PRTKILAS--VDY  100 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~---------------~~~~v~~t--~~~  100 (350)
                      +||+|=|.|.+|+.+...+.+.+-+ +|+.+.-.. ..+..+.-|++-..+.               ...++..+  .++
T Consensus         2 ikigINGFGRIGR~v~R~~~~~~~i-~ivaINd~~-~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p   79 (166)
T d1gado1           2 IKVGINGFGRIGRIVFRAAQKRSDI-EIVAINDLL-DADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP   79 (166)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCSSE-EEEEEECSS-CHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             eEEEEECCcHHHHHHHHHHhhCCCe-EEEEEeCCC-CHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCCh
Confidence            6999999999999999888877532 555555322 3443343343222110               12233333  334


Q ss_pred             ccc----CCCCEEEEecCCCc
Q 018760          101 AVT----AGSDLCIVTAGARQ  117 (350)
Q Consensus       101 ~al----~~aDiVIi~~g~~~  117 (350)
                      +.+    .++|+||.|.|.-.
T Consensus        80 ~~i~W~~~gvDiViEcTG~f~  100 (166)
T d1gado1          80 ANLKWDEVGVDVVAEATGLFL  100 (166)
T ss_dssp             GGGCHHHHTCSEEEECSSSCC
T ss_pred             HHCCccccCCCEEEEcccccc
Confidence            444    37999999988543

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=81.72  E-value=0.83  Score=35.89  Aligned_cols=32  Identities=13%  Similarity=0.338  Sum_probs=25.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEe
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVD   69 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D   69 (350)
                      -||+|||+|.+|..+|..|...+.-.+|+++.
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~   35 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVG   35 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEe
Confidence            36999999999999999998887633555554

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.36  E-value=0.63  Score=40.23  Aligned_cols=37  Identities=14%  Similarity=0.348  Sum_probs=30.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCcc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKAD   73 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~~   73 (350)
                      ..+|+|||+|..|.+.|+.|+++....+|.++|.+..
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~   86 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA   86 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence            3569999999999999999997633249999998653

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=81.24  E-value=2.8  Score=33.07  Aligned_cols=78  Identities=18%  Similarity=0.233  Sum_probs=45.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEE-eCCccchHHHHHHHHHHhhcC---------------CCceEEEc--C
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALV-DAKADKLRGEMLDLQHAAAFL---------------PRTKILAS--V   98 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~-D~~~~~l~~~~~dl~~~~~~~---------------~~~~v~~t--~   98 (350)
                      +.||+|=|-|.+|+.+...++..+-+ +++.+ |... .++..+.-|++-..+.               ...++..+  .
T Consensus         1 kikIgINGFGRIGR~v~R~~~~~~~~-~ivaINd~~~-~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~   78 (169)
T d1u8fo1           1 KVKVGVNGFGRIGRLVTRAAFNSGKV-DIVAINDPFI-DLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQER   78 (169)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSS-EEEEEECSSS-CHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred             CcEEEEECCcHHHHHHHHHHHHCCCc-EEEEecCCCc-cHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECC
Confidence            36999999999999999888877643 55555 4332 2343333344221110               12233332  2


Q ss_pred             Ccccc----CCCCEEEEecCCC
Q 018760           99 DYAVT----AGSDLCIVTAGAR  116 (350)
Q Consensus        99 ~~~al----~~aDiVIi~~g~~  116 (350)
                      +++++    .++|+||.|.|.-
T Consensus        79 ~p~~i~W~~~~vDiViEcTG~f  100 (169)
T d1u8fo1          79 DPSKIKWGDAGAEYVVESTGVF  100 (169)
T ss_dssp             SGGGCCTTTTTCCEEEECSSSC
T ss_pred             ChhhCCccccCCCEEEEeccee
Confidence            33333    3799999998754

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=80.71  E-value=0.67  Score=40.13  Aligned_cols=34  Identities=24%  Similarity=0.408  Sum_probs=30.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      ..-|+|||+|..|...|..+++.|.  +|+|++..+
T Consensus        19 ~~DVvVIGaG~aGl~AA~~aa~~G~--~V~vlEK~~   52 (317)
T d1qo8a2          19 TTQVLVVGAGSAGFNASLAAKKAGA--NVILVDKAP   52 (317)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHTC--CEEEECSSS
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4569999999999999999999996  899999864

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=80.67  E-value=0.71  Score=40.51  Aligned_cols=30  Identities=20%  Similarity=0.211  Sum_probs=27.6

Q ss_pred             eEEEEcCChhHHHHHHHHHhcCCCCeEEEEeC
Q 018760           39 KISVIGTGNVGMAIAQTILTQDFVEELALVDA   70 (350)
Q Consensus        39 KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~   70 (350)
                      -|.|||+|.-|..+|..|++.|+  +|++++.
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~--~VlvLEa   33 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGV--QTLMLEM   33 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC--CEEEEES
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcC--eEEEEec
Confidence            47899999999999999999996  8999997

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.52  E-value=0.79  Score=37.76  Aligned_cols=34  Identities=24%  Similarity=0.411  Sum_probs=27.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCC-CeEEEEeCC
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFV-EELALVDAK   71 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~-~ev~L~D~~   71 (350)
                      .||+|||+|..|.+.|...++.+.- ..|.++|.+
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~   36 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCD   36 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC
Confidence            5999999999999988777766542 378999974

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.45  E-value=4.3  Score=32.53  Aligned_cols=46  Identities=17%  Similarity=0.341  Sum_probs=30.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHhcCCC-CeEE---EEeCCccchHHHHHHHH
Q 018760           37 HTKISVIGTGNVGMAIAQTILTQDFV-EELA---LVDAKADKLRGEMLDLQ   83 (350)
Q Consensus        37 ~~KI~IIGAG~vG~~~a~~l~~~~~~-~ev~---L~D~~~~~l~~~~~dl~   83 (350)
                      +|||+|=|.|.+|+.+...++..++. .++-   +-|.+. .++..+.-|+
T Consensus         2 ~ikigINGFGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~-~~~~~ayLlk   51 (190)
T d1k3ta1           2 PIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNT-DAEYFAYQMR   51 (190)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEEESCC-CHHHHHHHHH
T ss_pred             CeEEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEecCCC-CHHHHHHHhh
Confidence            47999999999999999888876542 2333   344432 2444444444

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=80.28  E-value=2.2  Score=32.87  Aligned_cols=69  Identities=12%  Similarity=0.075  Sum_probs=41.2

Q ss_pred             CCCeEEEEcC---ChhHHHHHHHHHhcCCCCeEEEEeCCccchHHHHHHHHHHhhcCCCceEEEcCCc-cccCCCCEEEE
Q 018760           36 RHTKISVIGT---GNVGMAIAQTILTQDFVEELALVDAKADKLRGEMLDLQHAAAFLPRTKILASVDY-AVTAGSDLCIV  111 (350)
Q Consensus        36 ~~~KI~IIGA---G~vG~~~a~~l~~~~~~~ev~L~D~~~~~l~~~~~dl~~~~~~~~~~~v~~t~~~-~al~~aDiVIi  111 (350)
                      +..||++||=   |.|..+++..+..-|.  +++++=..+. ... -..+...    ...++..++|. +++++||+|..
T Consensus         2 ~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~--~~~~~~p~~~-~~~-~~~~~~~----~~~~~~~~~d~~eai~~aDvvy~   73 (153)
T d1pg5a2           2 DGLVFALLGDLKYARTVNSLLRILTRFRP--KLVYLISPQL-LRA-RKEILDE----LNYPVKEVENPFEVINEVDVLYV   73 (153)
T ss_dssp             TTCEEEEEECCSSCHHHHHHHHHGGGSCC--SEEEEECCGG-GCC-CHHHHTT----CCSCEEEESCGGGTGGGCSEEEE
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHHHcCC--eeEEEecccc-ccc-chhhccc----CCCeEEEEeCHHHHhhcCCeEEE
Confidence            3579999996   3478888877777775  5554433221 110 0111111    13355556676 68999998876


Q ss_pred             e
Q 018760          112 T  112 (350)
Q Consensus       112 ~  112 (350)
                      +
T Consensus        74 ~   74 (153)
T d1pg5a2          74 T   74 (153)
T ss_dssp             E
T ss_pred             e
Confidence            6

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=80.24  E-value=1.5  Score=36.79  Aligned_cols=21  Identities=19%  Similarity=0.259  Sum_probs=16.0

Q ss_pred             EEEcCCc-cccCCCCEEEEecC
Q 018760           94 ILASVDY-AVTAGSDLCIVTAG  114 (350)
Q Consensus        94 v~~t~~~-~al~~aDiVIi~~g  114 (350)
                      +..++|. +++++||+||++..
T Consensus       129 v~v~~d~~Eav~~ADiII~~vP  150 (242)
T d2b0ja2         129 LKVTSDDREAVEGADIVITWLP  150 (242)
T ss_dssp             CEEESCHHHHHTTCSEEEECCT
T ss_pred             CEEECCHHHHHhcCCeEEEeee
Confidence            3445565 88999999999964

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.09  E-value=1  Score=36.66  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=30.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHhcCCCCeEEEEeCCc
Q 018760           38 TKISVIGTGNVGMAIAQTILTQDFVEELALVDAKA   72 (350)
Q Consensus        38 ~KI~IIGAG~vG~~~a~~l~~~~~~~ev~L~D~~~   72 (350)
                      ..++|||+|..|..+|..|.+.+.-.+|++++...
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~   39 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDP   39 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence            46899999999999999998888767899998643