Citrus Sinensis ID: 018766


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
MKMEVQSVCRGLQLPKFKSSNCGFLSHQFVSPSASQFGSRSQSIRFGNAYKWYSAWSSKRGAILCASNSGSDTKLGFPSGENSSLPVAIFNGPEPFRGKSGSVSFCGLTHQLVEEGKLMSAPFQEDKGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQFSPKRWGLITGLRGYLTSAFFTTGLKVVAPLFAVYVTWPVLRLPALVAVLPFLVGCAAQLAFETNLDKRGSSCWPLIPIIFEVYRLYQLSKAANFIERLMFSMKDLPRSPELLERGSAMVSMVVIFQILGVVCLWSLLTFLLRLFPSRPVAENY
cccccccEEccccccccccccccccccccccccccccccccccccccccccEEEccccccccEEEEcccccccccccccccccccccccccccccccccccEEEEcccccHHHHcccccccccccccccEEEEHHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
cccEEHHEHccccccccccccccccccccccccccccccccccEEcccEEEEEEccccccEEEEEEEccccccccccccccccccccEcccccccccccccEEEEcccccccccccEEEccccccccccEEEEHcHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
mkmevqsvcrglqlpkfkssncgflshqfvspsasqfgsrsqsirfgNAYKWYSAWSSKRGAILcasnsgsdtklgfpsgensslpvaifngpepfrgksgsvsfcgLTHQLVEegklmsapfqedkgsflWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEIVSSLTFESMFYVGLAIFLRITdrvqrpylqfspkrwgliTGLRGYLTSAFFTTGLKVVAPLFAVYVtwpvlrlpALVAVLPFLVGCAAQLAFETnldkrgsscwpliPIIFEVYRLYQLSKAANFIERLMFSmkdlprspellerGSAMVSMVVIFQILGVVCLWSLLTFLLRlfpsrpvaeny
MKMEVQSVCRGLQLPKFKSSNCGFLSHQFVSPSASQFGSRSQSIRFGNAYKWYSAWSSKRGAILCASNSGSDTKLGFPSGENSSLPVAIFNGPEPFRGKSGSVSFCGLTHQLVEEGKLMSAPFQEDKGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQFSPKRWGLITGLRGYLTSAFFTTGLKVVAPLFAVYVTWPVLRLPALVAVLPFLVGCAAQLAFETnldkrgsscwPLIPIIFEVYRLYQLSKAANFIERLMFSMKDLPRSPELLERGSAMVSMVVIFQILGVVCLWSLLTFllrlfpsrpvaeny
MKMEVQSVCRGLQLPKFKSSNCGFLSHQFVSPSASQFGSRSQSIRFGNAYKWYSAWSSKRGAILCASNSGSDTKLGFPSGENSSLPVAIFNGPEPFRGKSGSVSFCGLTHQLVEEGKLMSAPFQEDKGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQFSPKRWGLITGLRGYLTSAFFTTGLKVVAPLFAVYVTWpvlrlpalvavlpflvGCAAQLAFETNLDKRGSSCWPLIPIIFEVYRLYQLSKAANFIERLMFSMKDLPRSPELLERGSAMVSMVVIFQILGVVClwslltfllrlfpsrpVAENY
********CRGLQLPKFKSSNCGFLSHQFV************SIRFGNAYKWYSAWSSKRGAILCA*********************AIF**********GSVSFCGLTHQLVEEGKLMSAPFQEDKGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQFSPKRWGLITGLRGYLTSAFFTTGLKVVAPLFAVYVTWPVLRLPALVAVLPFLVGCAAQLAFETNLDKRGSSCWPLIPIIFEVYRLYQLSKAANFIERLMFSMKDLP***ELLERGSAMVSMVVIFQILGVVCLWSLLTFLLRLFP********
*********RGLQL***********************************YKWYS*******************************************GKSGSVSFCG*********************SFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRP***********ITGLRGYLTSAFFTTGLKVVAPLFAVYVTWPVLRLPALVAVLPFLVGCAAQLAFETNLDKRGSSCWPLIPIIFEVYRLYQLSKAANFIERLMFSMKDLPRSPELLERGSAMVSMVVIFQILGVVCLWSLLTFLLRLFPS*******
********CRGLQLPKFKSSNCGFLSHQFV***********QSIRFGNAYKWYSAWSSKRGAILCASNSGSDTKLGFPSGENSSLPVAIFNGPEPFRGKSGSVSFCGLTHQLVEEGKLMSAPFQEDKGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQFSPKRWGLITGLRGYLTSAFFTTGLKVVAPLFAVYVTWPVLRLPALVAVLPFLVGCAAQLAFETNLDKRGSSCWPLIPIIFEVYRLYQLSKAANFIERLMFSMKDLPRSPELLERGSAMVSMVVIFQILGVVCLWSLLTFLLRLFPSRPVAENY
*KMEVQSVCRGLQLPKFKSSNCGFLSHQFVSPSASQFGSRSQSIRFGNAYKWYSAWSSKRGAILCASN*************NSSLPVAIFNGPEPFRGKSGSVSFCGLTHQLVEEGKLMSAPFQEDKGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQFSPKRWGLITGLRGYLTSAFFTTGLKVVAPLFAVYVTWPVLRLPALVAVLPFLVGCAAQLAFETNLDKRGSSCWPLIPIIFEVYRLYQLSKAANFIERLMFSMKDLPRSPELLERGSAMVSMVVIFQILGVVCLWSLLTFLLRLFPSRPV****
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MKMEVQSVCRGLQLPKFKSSNCGFLSHQFVSPSASQFGSRSQSIRFGNAYKWYSAWSSKRGAILCASNSGSDTKLGFPSGENSSLPVAIFNGPEPFRGKSGSVSFCGLTHQLVEEGKLMSAPFQEDKGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEIVSSLTFESMFYVGLAIFLRITDRVQRPYLQFSPKRWGLITGLRGYLTSAFFTTGLKVVAPLFAVYVTWPVLRLPALVAVLPFLVGCAAQLAFETNLDKRGSSCWPLIPIIFEVYRLYQLSKAANFIERLMFSMKDLPRSPELLERGSAMVSMVVIFQILGVVCLWSLLTFLLRLFPSRPVAENY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query350
255538514339 conserved hypothetical protein [Ricinus 0.962 0.994 0.637 1e-119
225458432355 PREDICTED: uncharacterized protein LOC10 0.988 0.974 0.613 1e-116
356510304356 PREDICTED: uncharacterized protein LOC10 0.977 0.960 0.566 1e-111
449476766345 PREDICTED: uncharacterized LOC101207359 0.885 0.898 0.639 1e-111
356519084356 PREDICTED: uncharacterized protein LOC10 0.974 0.957 0.567 1e-110
449460131345 PREDICTED: uncharacterized protein LOC10 0.885 0.898 0.636 1e-110
297847108331 hypothetical protein ARALYDRAFT_473986 [ 0.945 1.0 0.580 1e-107
255647675356 unknown [Glycine max] 0.974 0.957 0.550 1e-106
15221197340 uncharacterized protein [Arabidopsis tha 0.971 1.0 0.586 1e-105
8778686343 T1N15.7 [Arabidopsis thaliana] 0.971 0.991 0.581 1e-104
>gi|255538514|ref|XP_002510322.1| conserved hypothetical protein [Ricinus communis] gi|223551023|gb|EEF52509.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/350 (63%), Positives = 269/350 (76%), Gaps = 13/350 (3%)

Query: 3   MEVQSVCRGLQLPKFKSSNCGFLSHQFVSPSASQFGSRSQSIRFGNAYKWYSAWSSKRGA 62
           ME+QSVC GL  PK +      L+H+      S    ++ S++ G A K Y + S+KR  
Sbjct: 1   MELQSVCHGLTAPKLR------LTHRL-----SSHQHQTVSLKIGIASKSYLSSSNKRVT 49

Query: 63  ILCASNSGSDTK-LGFPSGENSSLPVAIFNGPEPFRGKSGSVSFCGLTHQLVEEGKLMSA 121
           I  +S++ S    L     E + +P A FN  EPFRGKSGS+SF GLTHQ VE GKL+SA
Sbjct: 50  IRASSSNSSRNTNLELSDREGTGVPDASFNELEPFRGKSGSISFYGLTHQSVEAGKLVSA 109

Query: 122 PFQ-EDKGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEIVSSLTFESMFYVGL 180
           PF  ED GSFLWIL P  LI+SL +PQ F+ NVIE F+KD +L+EIV+SL+ E+MFY+GL
Sbjct: 110 PFNGEDNGSFLWILGPAALIASLFIPQFFISNVIEAFLKDEILVEIVASLSSEAMFYIGL 169

Query: 181 AIFLRITDRVQRPYLQFSPKRWGLITGLRGYLTSAFFTTGLKVVAPLFAVYVTWPVLRLP 240
           +IFL +TDRVQRP+LQFSPKRWGLITGL+GYLTSAFF  G KV+APLF VY TWPVLRLP
Sbjct: 170 SIFLLVTDRVQRPFLQFSPKRWGLITGLKGYLTSAFFIMGFKVIAPLFIVYATWPVLRLP 229

Query: 241 ALVAVLPFLVGCAAQLAFETNLDKRGSSCWPLIPIIFEVYRLYQLSKAANFIERLMFSMK 300
           ALVAVLPFLVGC AQ  FE  LD+ GSSCWP++PIIFEVYR+YQLSKAA+FIE+LMFSM+
Sbjct: 230 ALVAVLPFLVGCIAQRVFEIRLDQLGSSCWPIVPIIFEVYRIYQLSKAAHFIEKLMFSMR 289

Query: 301 DLPRSPELLERGSAMVSMVVIFQILGVVCLWSLLTFLLRLFPSRPVAENY 350
            LP S +LLER +A+++M+V FQ LGV+CLWSLLTF LRLFPSRPVAENY
Sbjct: 290 GLPESVQLLERNNALIAMIVTFQFLGVLCLWSLLTFFLRLFPSRPVAENY 339




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458432|ref|XP_002283812.1| PREDICTED: uncharacterized protein LOC100245429 [Vitis vinifera] gi|302142414|emb|CBI19617.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356510304|ref|XP_003523879.1| PREDICTED: uncharacterized protein LOC100805065 [Glycine max] Back     alignment and taxonomy information
>gi|449476766|ref|XP_004154828.1| PREDICTED: uncharacterized LOC101207359 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356519084|ref|XP_003528204.1| PREDICTED: uncharacterized protein LOC100780682 [Glycine max] Back     alignment and taxonomy information
>gi|449460131|ref|XP_004147799.1| PREDICTED: uncharacterized protein LOC101207359 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297847108|ref|XP_002891435.1| hypothetical protein ARALYDRAFT_473986 [Arabidopsis lyrata subsp. lyrata] gi|297337277|gb|EFH67694.1| hypothetical protein ARALYDRAFT_473986 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255647675|gb|ACU24299.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|15221197|ref|NP_175279.1| uncharacterized protein [Arabidopsis thaliana] gi|56381889|gb|AAV85663.1| At1g48460 [Arabidopsis thaliana] gi|57222220|gb|AAW39017.1| At1g48460 [Arabidopsis thaliana] gi|332194175|gb|AEE32296.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|8778686|gb|AAF79694.1|AC020889_2 T1N15.7 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query350
TAIR|locus:2198070340 AT1G48460 "AT1G48460" [Arabido 0.971 1.0 0.517 3.8e-85
TAIR|locus:2166330366 AT5G63040 "AT5G63040" [Arabido 0.648 0.620 0.294 8.7e-24
TAIR|locus:2198070 AT1G48460 "AT1G48460" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
 Identities = 180/348 (51%), Positives = 225/348 (64%)

Query:     3 MEVQSVCRGLQLPKFKSSNCGFLSHQFVSPSASQFGSRSQSIRFGNAYKWYSAWSSKRGA 62
             ME +++C G   P+ + S+   LS     P++S F +R + +       W     S R  
Sbjct:     1 MESKAICLGFLPPRLRFSSPRLLSLPPSPPASSTFATRHK-LDSRQTLLWNKPQLS-RVR 58

Query:    63 ILCASNSGSDTKLGFPSGENSSLPVAIFNGPEPFRGKSGSVSFCGLTHQLVEEGKLMSAP 122
             + C+S S SD++      + S+   A     E FRGKSGSVSF GLTHQLVEE KL+SAP
Sbjct:    59 VACSS-SQSDSRPEKKQSDKSNYARA-----ELFRGKSGSVSFNGLTHQLVEESKLVSAP 112

Query:   123 FQEDKGSFLWILAPVVLISSLILPQMFLGNVIEDFIKDNLLMEIVSSLTFESMFYVGLAI 182
             FQE+KGSFLW+LAPVVLISSLILPQ FL  +IE   K++ + EIV+S  FE++FY GLAI
Sbjct:   113 FQEEKGSFLWVLAPVVLISSLILPQFFLSGIIEATFKNDTVAEIVTSFCFETVFYAGLAI 172

Query:   183 FLRITDRVQRPYLQFSPKRWGLITGLRGYLTSAFFTTGLKVVAPLFAVYVTWXXXXXXXX 242
             FL +TDRVQRPYL FS KRWGLITGLRGYLTSAF T GLKVV P+FAVY+TW        
Sbjct:   173 FLSVTDRVQRPYLDFSSKRWGLITGLRGYLTSAFLTMGLKVVVPVFAVYMTWPALGIDAL 232

Query:   243 XXXXXXXXGCAAQLAFETNLDKRGSSCWPLIPIIFEVYRLYQLSKAANFIERLMFSMKDL 302
                     GCA Q  FE  L++RGSSCWP++PI+FEVYRLYQ+++AA F++RLMF MKD 
Sbjct:   233 IAVLPFLVGCAVQRVFEARLERRGSSCWPIVPIVFEVYRLYQVTRAATFVQRLMFMMKDA 292

Query:   303 PRSPELLERGSAMVSMVVIFQILGVVCXXXXXXXXXXXXXXXXVAENY 350
               + E+ ERG A+V +VV  Q L V+C                V ENY
Sbjct:   293 ATTAEITERGVALVGLVVTLQFLAVMCLWSFITFLMRLFPSRPVGENY 340




GO:0003674 "molecular_function" evidence=ND
GO:0005739 "mitochondrion" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009536 "plastid" evidence=IDA
TAIR|locus:2166330 AT5G63040 "AT5G63040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query350
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 54.5 bits (130), Expect = 3e-08
 Identities = 51/354 (14%), Positives = 94/354 (26%), Gaps = 118/354 (33%)

Query: 50  YKW-YSAWSSKRGAILCASNSGSDTKLGFPSGENSSLPVAIFNGPEPFRGKSGSVSFCGL 108
           YK+  S   ++           S     +    +      ++N  + F     +VS    
Sbjct: 91  YKFLMSPIKTE-------QRQPSMMTRMYIEQRDR-----LYNDNQVFA--KYNVSRLQP 136

Query: 109 THQLVEEGKLMSAPFQEDKGSFL--------WILAPVVLISSLILPQMF-------LGNV 153
             +L +   L+    +  K   +          +A  V +S  +  +M        L N 
Sbjct: 137 YLKLRQ--ALLEL--RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192

Query: 154 IEDFIKDNLLMEIVSSL--TFESMFYVGLAIFLRITDRVQ------RPYLQFSPKRWGLI 205
                    ++E++  L    +  +         I  R+       R  L+  P    L+
Sbjct: 193 NSP----ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248

Query: 206 TGLR----GYLTSAF-------FTTGLKVVA--------------------------PLF 228
             L         +AF        TT  K V                            L 
Sbjct: 249 V-LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 229 AVYVTWPVLRLPALV-AVLPFLVG-CAAQLAFETNLDKRGSSCWPLIPIIFEVYRLYQLS 286
             Y+      LP  V    P  +   A  +       + G + W       + ++     
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSIIAESI-------RDGLATW-------DNWKHVNCD 353

Query: 287 KAANFIERLMFSMKDLPRSPELLERGSAMVSMVVIF--------QILGVVCLWS 332
           K    IE    S+  L   P    +   M   + +F         +L +  +W 
Sbjct: 354 KLTTIIES---SLNVL--EPAEYRK---MFDRLSVFPPSAHIPTILLSL--IWF 397


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00