Citrus Sinensis ID: 018775
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 350 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LEL6 | 347 | (RS)-norcoclaurine 6-O-me | N/A | no | 0.985 | 0.994 | 0.431 | 2e-77 | |
| Q9LEL5 | 350 | 3'-hydroxy-N-methyl-(S)-c | N/A | no | 0.968 | 0.968 | 0.385 | 4e-73 | |
| B6VJS4 | 357 | Trans-resveratrol di-O-me | no | no | 0.988 | 0.969 | 0.407 | 2e-72 | |
| Q9FK25 | 363 | Flavone 3'-O-methyltransf | yes | no | 0.911 | 0.878 | 0.417 | 6e-71 | |
| Q43609 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.897 | 0.860 | 0.442 | 2e-70 | |
| Q9XGW0 | 361 | Caffeic acid 3-O-methyltr | N/A | no | 0.891 | 0.864 | 0.425 | 2e-68 | |
| Q41086 | 364 | Caffeic acid 3-O-methyltr | N/A | no | 0.894 | 0.859 | 0.419 | 2e-68 | |
| Q00763 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.94 | 0.901 | 0.411 | 5e-68 | |
| Q43046 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.94 | 0.901 | 0.411 | 8e-68 | |
| Q8GU25 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.908 | 0.871 | 0.428 | 1e-67 |
| >sp|Q9LEL6|6OMT_COPJA (RS)-norcoclaurine 6-O-methyltransferase OS=Coptis japonica PE=1 SV=1 | Back alignment and function desciption |
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Score = 290 bits (741), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 151/350 (43%), Positives = 222/350 (63%), Gaps = 5/350 (1%)
Query: 1 MEVHEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCP 60
MEV ++ L QA++W ++ FA+S+ LK AV+L LA+I+H+ G+ +TL +L+SR+ S
Sbjct: 1 MEVKKDNLSSQAKLWNFIYGFAESLVLKCAVQLDLANIIHNSGTSMTLSELSSRLPSQPV 60
Query: 61 DIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQW 120
+ L R+MR LV +F S DG E Y + +K+L+ + + IL ++
Sbjct: 61 NEDALYRVMRYLVHMKLF-TKASIDG--ELRYGLAPPAKYLVKGWDKCMVGSILAITDKD 117
Query: 121 LLEPWHYLSQCVK-EGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSH 179
+ PWHYL + E G AF+KA G IW + ++ P+ N LFN+AMA ++++M ALV
Sbjct: 118 FMAPWHYLKDGLSGESGTAFEKALGTNIWGYMAEHPEKNQLFNEAMANDSRLIMSALVKE 177
Query: 180 YKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMF 239
+ F+ I +L DVGGGTG A+ I ++PHIK +DLPHV+A +P + V GDMF
Sbjct: 178 CGNIFNGITTLVDVGGGTGTAVRNIANAFPHIKCTVYDLPHVIADSPGYSEVHCVAGDMF 237
Query: 240 DAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMG 299
IPKADA+ MK ILHDWDD+ C++ILK C++A+P K GK+++V+IV+ + + M
Sbjct: 238 KFIPKADAIMMKCILHDWDDKECIEILKRCKEAVPVKGGKVIIVDIVLNVQSEHPYTKMR 297
Query: 300 LVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349
L DL M + TGGKERTE+EW KL+ G+ KI + A+ S+IEAYP
Sbjct: 298 LTLDLDMMLN-TGGKERTEEEWKKLIHDAGYKGHKITQITAVQSVIEAYP 346
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Catalyzes the transfer of the S-methyl group of S-adenosyl-L-methionine (AdoMet) to the 6-hydroxyl group of norcoclaurine to form coclaurine. Coptis japonica (taxid: 3442) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 2EC: 8 |
| >sp|Q9LEL5|4OMT_COPJA 3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase OS=Coptis japonica PE=1 SV=1 | Back alignment and function description |
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Score = 275 bits (703), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 132/342 (38%), Positives = 209/342 (61%), Gaps = 3/342 (0%)
Query: 8 LRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLAR 67
++ QA VW++++ FADS+ L+ AVEL + DI+ ++ P+ L LAS++ S + L R
Sbjct: 12 IKAQAHVWKIIYGFADSLVLRCAVELGIVDIIDNNNQPMALADLASKLPVSDVNCDNLYR 71
Query: 68 LMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQWLLEPWHY 127
++R LV+ I V +S DG + Y + I+ L +++ S+ PMIL + + PWH
Sbjct: 72 ILRYLVKMEILRVEKSDDG--QKKYALEPIATLLSRNAKRSMVPMILGMTQKDFMTPWHS 129
Query: 128 LSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGFDSI 187
+ + + G AF+KA G IW++ P + LFN+ MA +++ +L+S +D F I
Sbjct: 130 MKDGLSDNGTAFEKAMGMTIWEYLEGHPDQSQLFNEGMAGETRLLTSSLISGSRDMFQGI 189
Query: 188 QSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAIPKADA 247
SL DVGGG G + I ++PHIK FDLPHV+A + I +GGDMF ++P A A
Sbjct: 190 DSLVDVGGGNGTTVKAISDAFPHIKCTLFDLPHVIANSYDLPNIERIGGDMFKSVPSAQA 249
Query: 248 VFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMF 307
+ +K ILHDW+DE +KILK CR A+P GK+++V++ + E+ ++ L+ D+ M
Sbjct: 250 IILKLILHDWNDEDSIKILKQCRNAVPKDGGKVIIVDVALDEESDHELSSTRLILDIDML 309
Query: 308 AHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349
+ TGGKERT++ W K+++ GF CKI + A+ S+IE +P
Sbjct: 310 VN-TGGKERTKEVWEKIVKSAGFSGCKIRHIAAIQSVIEVFP 350
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Catalyzes the transfer of the methyl group to the 4'-hydroxyl group of 3'-hydroxy-N-methylcoclaurine to form reticuline. Coptis japonica (taxid: 3442) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 1 EC: 6 |
| >sp|B6VJS4|ROMT_VITVI Trans-resveratrol di-O-methyltransferase OS=Vitis vinifera GN=ROMT PE=1 SV=2 | Back alignment and function description |
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Score = 273 bits (697), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 143/351 (40%), Positives = 203/351 (57%), Gaps = 5/351 (1%)
Query: 3 VHEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDI 62
+ ELL QA VW +F F SM+LK A++L + DI+H+HG P+TLP+L +++
Sbjct: 8 ISAELLHAQAHVWNHIFNFIKSMSLKCAIQLGIPDIIHNHGKPMTLPELVAKLPVHPKRS 67
Query: 63 PYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQWLL 122
+ RLMR+LV G A + G +E Y +T S+ LL D LS+ P++L + L
Sbjct: 68 QCVYRLMRILVHSGFLAAQRVQQGKEEEGYVLTDASRLLLMDDSLSIRPLVLAMLDPILT 127
Query: 123 EPWHYLSQCVK-EGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYK 181
+PWHYLS + + F A+ WD+A PQ NN FN+AMA A+++ L+ +
Sbjct: 128 KPWHYLSAWFQNDDPTPFHTAYERSFWDYAGHEPQLNNSFNEAMASDARLLTSVLLKEGQ 187
Query: 182 DGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDA 241
F + SL DVGGGTG I ++PH+ DL HVVA + + + GDMF+A
Sbjct: 188 GVFAGLNSLVDVGGGTGKVAKAIANAFPHLNCTVLDLSHVVAGLQGSKNLNYFAGDMFEA 247
Query: 242 IPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKS--GKLVLVE-IVVQEDGNNIFGDM 298
IP ADA+ +KWILHDW +E CVKILK CR+AIP K GK+++++ I+++ G+ +
Sbjct: 248 IPPADAILLKWILHDWSNEECVKILKRCREAIPSKENGGKVIIIDMIMMKNQGDYKSTET 307
Query: 299 GLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349
L FD+ M G+ER E EW KL GF KI + L S+IE YP
Sbjct: 308 QLFFDMTMMIFAP-GRERDENEWEKLFLDAGFSHYKITPILGLRSLIEVYP 357
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Catalyzes the biosynthesis of pterostilbene from resveratrol. Pterostilbene has both antifungal and pharmacological properties. Also has activity toward resveratrol monomethyl ether (RME). Vitis vinifera (taxid: 29760) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 4 EC: 0 |
| >sp|Q9FK25|OMT1_ARATH Flavone 3'-O-methyltransferase 1 OS=Arabidopsis thaliana GN=OMT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (684), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 136/326 (41%), Positives = 204/326 (62%), Gaps = 7/326 (2%)
Query: 16 QLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPY-LARLMRMLVR 74
QL A MALKSA+EL L +IM +GSP++ ++AS++ + P+ P L R++R+L
Sbjct: 25 QLASASVLPMALKSALELDLLEIMAKNGSPMSPTEIASKLPTKNPEAPVMLDRILRLLTS 84
Query: 75 KGIFAVHQSSDGGD--ETLYKMTHISKWLLHDSE-LSLAPMILVENNQWLLEPWHYLSQC 131
+ GD E +Y + + K+L + + +S+A + L+ ++ L+E W++L
Sbjct: 85 YSVLTCSNRKLSGDGVERIYGLGPVCKYLTKNEDGVSIAALCLMNQDKVLMESWYHLKDA 144
Query: 132 VKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGFDSIQSLA 191
+ +GGI F KA+G +++ P+FN +FN+ M+ + I MK ++ YK GF+ + SL
Sbjct: 145 ILDGGIPFNKAYGMSAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETYK-GFEGLTSLV 203
Query: 192 DVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAIPKADAVFMK 251
DVGGG G L IV YP++KGINFDLPHV+ AP GI HVGGDMF ++PK DA+FMK
Sbjct: 204 DVGGGIGATLKMIVSKYPNLKGINFDLPHVIEDAPSHPGIEHVGGDMFVSVPKGDAIFMK 263
Query: 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLV-FDLVMFAHT 310
WI HDW DE CVK LKNC +++P+ GK++L E ++ E ++ +V D +M AH
Sbjct: 264 WICHDWSDEHCVKFLKNCYESLPE-DGKVILAECILPETPDSSLSTKQVVHVDCIMLAHN 322
Query: 311 TGGKERTEQEWMKLLEQGGFHRCKII 336
GGKERTE+E+ L + GF K++
Sbjct: 323 PGGKERTEKEFEALAKASGFKGIKVV 348
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Methylates OH residues of flavonoid compounds. Substrate preference is quercetin > myricetin >> luteolin. Dihydroquercetin is not a substrate. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 6 |
| >sp|Q43609|COMT1_PRUDU Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1 | Back alignment and function description |
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Score = 266 bits (679), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 143/323 (44%), Positives = 201/323 (62%), Gaps = 9/323 (2%)
Query: 16 QLMFAFADSMALKSAVELRLADIMHSHGSPITLP--QLASRIDSSCPDIPY-LARLMRML 72
QL A M LK+A+EL L +IM G + L +AS++ + PD P L R++R+L
Sbjct: 25 QLASASVLPMVLKAAIELDLLEIMAKAGPGVFLSPTDIASQLPTKNPDAPVMLDRMLRLL 84
Query: 73 VRKGI--FAVHQSSDGGDETLYKMTHISKWLLHDSE-LSLAPMILVENNQWLLEPWHYLS 129
I +++ +DG E LY + + K+L + E +S+AP+ L+ ++ LLE W++L
Sbjct: 85 ASYSILTYSLRTLADGKVERLYGLGPVCKFLTKNEEGVSIAPLCLMNQDKVLLESWYHLK 144
Query: 130 QCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGFDSIQS 189
V EGGI F KA+G +++ P+FN +FN MA + I MK ++ YK GF+ + S
Sbjct: 145 DAVLEGGIPFNKAYGMTAFEYHGTDPRFNKVFNRGMADHSTITMKKILETYK-GFEGLTS 203
Query: 190 LADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAIPKADAVF 249
+ DVGGGTG L IV YP IKGINFDLPHV+ AP G+ HVGGDMF ++PK DA+F
Sbjct: 204 VVDVGGGTGAVLNMIVSKYPSIKGINFDLPHVIEDAPQYPGVEHVGGDMFVSVPKGDAIF 263
Query: 250 MKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLV-FDLVMFA 308
MKWI HDW DE C+K LKNC A+PD +GK++L E ++ ++ G+V D++M A
Sbjct: 264 MKWICHDWSDEHCLKFLKNCYAALPD-NGKVILGECILPVAPDSSLATKGVVHIDVIMLA 322
Query: 309 HTTGGKERTEQEWMKLLEQGGFH 331
H GGKERTEQE+ L + GF
Sbjct: 323 HNPGGKERTEQEFQALAKGAGFQ 345
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Prunus dulcis (taxid: 3755) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q9XGW0|COMT1_OCIBA Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1 | Back alignment and function description |
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Score = 259 bits (663), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 139/327 (42%), Positives = 201/327 (61%), Gaps = 15/327 (4%)
Query: 16 QLMFAFADSMALKSAVELRLADIMHSHG-----SPITLPQLASRIDSSCPDI-PYLARLM 69
QL A M LKSA+EL L +++ G SP+ LA+++ ++ PD L R++
Sbjct: 23 QLASASVLPMVLKSAIELDLLELIKKSGAGAFVSPV---DLAAQLPTTNPDAHVMLDRIL 79
Query: 70 RMLVRKGIFAVHQSS--DGGDETLYKMTHISKWLLHDSE-LSLAPMILVENNQWLLEPWH 126
R+L I + DGG E LY + + K+L + + +S+AP+ L+ ++ L+E W+
Sbjct: 80 RLLTSYAILECRLKTLPDGGVERLYGLAPVCKFLTKNEDGVSMAPLTLMNQDKVLMESWY 139
Query: 127 YLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGFDS 186
+LS V +GGI F KA+G +++ P+FN +FN M+ + I MK ++ Y GFD
Sbjct: 140 HLSDAVVDGGIPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILETYT-GFDG 198
Query: 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAIPKAD 246
++++ DVGGGTG L IV YP IKGINFDLPHV+ AP G+ HVGGDMF ++PK D
Sbjct: 199 LKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPKGD 258
Query: 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLV-FDLV 305
A+FMKWI HDW DE CVK LKNC A+P ++GK++L E V+ E + +V D++
Sbjct: 259 AIFMKWICHDWSDEHCVKFLKNCYDALP-QNGKVILAECVLPEAPDTGLATKNVVHIDVI 317
Query: 306 MFAHTTGGKERTEQEWMKLLEQGGFHR 332
M AH GGKERTE+E+ L + GF +
Sbjct: 318 MLAHNPGGKERTEKEFQGLAKAAGFKQ 344
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q41086|COMT2_POPTM Caffeic acid 3-O-methyltransferase 2 OS=Populus tremuloides GN=OMT2 PE=3 SV=1 | Back alignment and function description |
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Score = 259 bits (662), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 201/322 (62%), Gaps = 9/322 (2%)
Query: 16 QLMFAFADSMALKSAVELRLADIMHSHGSPITLP--QLASRIDSSCPDIPY-LARLMRML 72
QL+ + M LK+A+EL L +IM G LP +AS + + P+ P L R++R+L
Sbjct: 24 QLISSSVLPMVLKTAIELDLLEIMAKAGPGALLPPSDIASHLPTKNPNAPVMLDRILRLL 83
Query: 73 VRKGIF--AVHQSSDGGDETLYKMTHISKWLLHDSE-LSLAPMILVENNQWLLEPWHYLS 129
I ++ DG E LY + + K+L + + +S++P+ L+ ++ L+E W++L
Sbjct: 84 ASYSILICSLRDLPDGKVERLYGLASVCKFLTRNEDGVSVSPLCLMNQDKVLMESWYHLK 143
Query: 130 QCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGFDSIQS 189
+ EGGI F KA+G +++ P+FN +FN M+ +K+ MK ++ YK GF+ + S
Sbjct: 144 DAILEGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSVHSKMAMKKILETYK-GFEGLAS 202
Query: 190 LADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAIPKADAVF 249
L DVGGGTG ++ IV YP IKGINFDLPHV+A AP G+ +VGGDMF ++PKADAVF
Sbjct: 203 LVDVGGGTGAVVSTIVSKYPSIKGINFDLPHVIADAPAFPGVENVGGDMFVSVPKADAVF 262
Query: 250 MKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLV-FDLVMFA 308
MKWI HDW DE C+ LKNC A+P+ +GK++LVE ++ + G++ D++M A
Sbjct: 263 MKWICHDWSDEHCLTFLKNCYDALPE-NGKVILVECILPVAPDTSLATKGVMHVDVIMLA 321
Query: 309 HTTGGKERTEQEWMKLLEQGGF 330
H GGKERT++E+ L GF
Sbjct: 322 HNPGGKERTDREFESLARGAGF 343
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Populus tremuloides (taxid: 3693) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 258 bits (659), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 139/338 (41%), Positives = 206/338 (60%), Gaps = 9/338 (2%)
Query: 16 QLMFAFADSMALKSAVELRLADIMHSHG--SPITLPQLASRIDSSCPDIPY-LARLMRML 72
QL A M LK+A+EL L +IM G + ++ ++AS + + PD P L R++R+L
Sbjct: 25 QLASASVLPMILKTAIELDLLEIMAKAGPGAFLSTSEIASHLPTKNPDAPVMLDRILRLL 84
Query: 73 VRKGIF--AVHQSSDGGDETLYKMTHISKWLLHDSE-LSLAPMILVENNQWLLEPWHYLS 129
I ++ DG E LY + + K+L + + +S++P+ L+ ++ L+E W+YL
Sbjct: 85 ASYSILTCSLKDLPDGKVERLYGLAPVCKFLTKNEDGVSVSPLCLMNQDKVLMESWYYLK 144
Query: 130 QCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGFDSIQS 189
+ +GGI F KA+G +++ P+FN +FN M+ + I MK ++ YK GF+ + S
Sbjct: 145 DAILDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYK-GFEGLTS 203
Query: 190 LADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAIPKADAVF 249
L DVGGGTG + IV YP IKGINFDLPHV+ AP G+ HVGGDMF ++PKADAVF
Sbjct: 204 LVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPKADAVF 263
Query: 250 MKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLV-FDLVMFA 308
MKWI HDW D C+K LKNC A+P+ +GK++LVE ++ + G+V D++M A
Sbjct: 264 MKWICHDWSDAHCLKFLKNCYDALPE-NGKVILVECILPVAPDTSLATKGVVHVDVIMLA 322
Query: 309 HTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIE 346
H GGKERTE+E+ L + GF +++ +IE
Sbjct: 323 HNPGGKERTEKEFEGLAKGAGFQGFEVMCCAFNTHVIE 360
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Populus tremuloides (taxid: 3693) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q43046|COMT1_POPKI Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (657), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 139/338 (41%), Positives = 203/338 (60%), Gaps = 9/338 (2%)
Query: 16 QLMFAFADSMALKSAVELRLADIMHSHGSP--ITLPQLASRIDSSCPDIPY-LARLMRML 72
QL A M LK+A+EL L +IM G ++ ++AS + + PD P L R++R+L
Sbjct: 25 QLASASVLPMILKTAIELDLLEIMAKAGPGAFLSTSEIASHLPTKNPDAPVMLDRILRLL 84
Query: 73 VRKGIF--AVHQSSDGGDETLYKMTHISKWLLHDSE-LSLAPMILVENNQWLLEPWHYLS 129
I ++ DG E LY + + K+L + + +S++P+ L+ ++ L+E W+YL
Sbjct: 85 ASYSILTCSLKDLPDGKVERLYGLAPVCKFLTKNEDGVSVSPLCLMNQDKVLMESWYYLK 144
Query: 130 QCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGFDSIQS 189
+ EGGI F KA+G +++ P+FN +FN M+ + I MK ++ YK GF+ + S
Sbjct: 145 DAILEGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYK-GFEGLTS 203
Query: 190 LADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAIPKADAVF 249
L DVGGGTG + IV YP IKGINFDLPHV+ AP G+ HVGGDMF ++P ADAVF
Sbjct: 204 LVDVGGGTGAVVNTIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPNADAVF 263
Query: 250 MKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLV-FDLVMFA 308
MKWI HDW D C+K LKNC A+P+ +GK++LVE ++ + G+V D++M A
Sbjct: 264 MKWICHDWSDAHCLKFLKNCYDALPE-NGKVILVECILPVAPDTSLATKGVVHVDVIMLA 322
Query: 309 HTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIE 346
H GGKERTE+E+ L GF +++ +IE
Sbjct: 323 HNPGGKERTEKEFEGLANGAGFQGFEVMCCAFNTHVIE 360
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Populus kitakamiensis (taxid: 34292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q8GU25|COMT1_ROSCH Caffeic acid 3-O-methyltransferase OS=Rosa chinensis GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (656), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 140/327 (42%), Positives = 199/327 (60%), Gaps = 9/327 (2%)
Query: 16 QLMFAFADSMALKSAVELRLADIMHSHGSPITLP--QLASRIDSSCPDIPY-LARLMRML 72
QL A M LK+A+EL L +IM G L LAS++ + P+ P L R++R+L
Sbjct: 25 QLASASVLPMVLKAAIELDLLEIMAKAGPGAFLSPNDLASQLPTKNPEAPVMLDRMLRLL 84
Query: 73 VRKGI--FAVHQSSDGGDETLYKMTHISKWLLHDSE-LSLAPMILVENNQWLLEPWHYLS 129
I +++ DG E LY + + K+L + + +S+A + L+ ++ L+E W++L
Sbjct: 85 ASYSILTYSLRTLPDGKVERLYGLGPVCKFLTKNEDGVSIAALCLMNQDKVLVESWYHLK 144
Query: 130 QCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGFDSIQS 189
V +GGI F KA+G +D+ P+FN +FN MA + I MK ++ YK GF+ + S
Sbjct: 145 DAVLDGGIPFNKAYGMTAFDYHGTDPRFNKVFNKGMADHSTITMKKILETYK-GFEGLTS 203
Query: 190 LADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAIPKADAVF 249
+ DVGGGTG + IV YP IKGINFDLPHV+ AP G+ HVGGDMF ++PK DA+F
Sbjct: 204 IVDVGGGTGAVVNMIVSKYPSIKGINFDLPHVIEDAPQYPGVQHVGGDMFVSVPKGDAIF 263
Query: 250 MKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLV-FDLVMFA 308
MKWI HDW DE C+K LKNC A+PD +GK++L E ++ + G+V D+VM A
Sbjct: 264 MKWICHDWSDEHCLKFLKNCYAALPD-NGKVILGECILPVAPDTSLATKGVVHIDVVMLA 322
Query: 309 HTTGGKERTEQEWMKLLEQGGFHRCKI 335
H GGKERTEQE+ L + GF ++
Sbjct: 323 HNPGGKERTEQEFEALAKGSGFQGIRV 349
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Rosa chinensis (taxid: 74649) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 350 | ||||||
| 255553835 | 351 | o-methyltransferase, putative [Ricinus c | 0.985 | 0.982 | 0.731 | 1e-151 | |
| 183585187 | 351 | caffeic acid 3-O-methyltransferase [Popu | 0.988 | 0.985 | 0.723 | 1e-149 | |
| 224127144 | 351 | alkaloid o-methyltransferase related [Po | 0.988 | 0.985 | 0.726 | 1e-149 | |
| 429326472 | 351 | caffeic acid O-methyltransferase [Populu | 0.988 | 0.985 | 0.723 | 1e-149 | |
| 255553833 | 352 | o-methyltransferase, putative [Ricinus c | 0.985 | 0.980 | 0.658 | 1e-137 | |
| 225447211 | 367 | PREDICTED: (RS)-norcoclaurine 6-O-methyl | 0.982 | 0.937 | 0.674 | 1e-130 | |
| 300077149 | 367 | O-methyltransferase [Vitis vinifera] | 0.982 | 0.937 | 0.668 | 1e-129 | |
| 224103575 | 354 | alkaloid o-methyltransferase related [Po | 0.982 | 0.971 | 0.624 | 1e-127 | |
| 300077147 | 369 | O-methyltransferase [Vitis vinifera] | 0.985 | 0.934 | 0.648 | 1e-127 | |
| 32440935 | 359 | caffeic acid O-methyltransferase [Rosa c | 0.988 | 0.963 | 0.625 | 1e-127 |
| >gi|255553835|ref|XP_002517958.1| o-methyltransferase, putative [Ricinus communis] gi|223542940|gb|EEF44476.1| o-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust.
Identities = 253/346 (73%), Positives = 299/346 (86%), Gaps = 1/346 (0%)
Query: 5 EELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPY 64
E+L+ GQ E+W+LMF FADSM LK+AVELR+ DI++SH PITL Q+AS IDSS PDI Y
Sbjct: 7 EKLVSGQLEIWKLMFGFADSMVLKAAVELRIPDIINSHARPITLSQIASGIDSSSPDISY 66
Query: 65 LARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQWLLEP 124
LAR+MR LV KGIF HQ SDGG E+ Y + ++WLL DS+L+L PM+++EN+ W + P
Sbjct: 67 LARIMRYLVCKGIFTAHQPSDGG-ESFYGLAENTRWLLRDSDLTLHPMVIMENHPWQVTP 125
Query: 125 WHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGF 184
WHYL QCVKEGGIAFKKAHGCE+WDFASQ+P+FN +FN A+ACTAKIVMKA++S YKDGF
Sbjct: 126 WHYLGQCVKEGGIAFKKAHGCEMWDFASQNPEFNRIFNQALACTAKIVMKAVLSGYKDGF 185
Query: 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAIPK 244
D+I +L DVGGGTGG LAEIVK+YPHIK +NFDLPHVVATAP +GI HVGG+MF++IP
Sbjct: 186 DAITTLVDVGGGTGGNLAEIVKAYPHIKTLNFDLPHVVATAPAFDGIAHVGGNMFESIPN 245
Query: 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDL 304
ADA+FMKWILHDW DE CVKILKNCR+AIP+K+GKLVLVEIV+QEDGNN FGDMGLVFDL
Sbjct: 246 ADAIFMKWILHDWGDEYCVKILKNCRKAIPEKTGKLVLVEIVLQEDGNNQFGDMGLVFDL 305
Query: 305 VMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYPQ 350
+MFAHTTGGKER+E EW KLLE+GGF R KII++PAL SIIEAYPQ
Sbjct: 306 LMFAHTTGGKERSEIEWKKLLEEGGFPRYKIINIPALPSIIEAYPQ 351
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|183585187|gb|ACC63885.1| caffeic acid 3-O-methyltransferase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 251/347 (72%), Positives = 295/347 (85%), Gaps = 1/347 (0%)
Query: 4 HEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIP 63
E LLRGQ EVWQLMF FA+SMALK A+EL +ADI++S G P+TL Q+AS IDS C DIP
Sbjct: 6 EEALLRGQVEVWQLMFGFAESMALKCAIELGIADIINSLGGPVTLNQIASGIDSPCVDIP 65
Query: 64 YLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQWLLE 123
YLAR+MR LVRK +F H SDGG ETLY +T SKWLL DSE+SLAPM+L++N W L
Sbjct: 66 YLARIMRFLVRKRVFTQHNPSDGG-ETLYGLTDSSKWLLRDSEVSLAPMVLMQNYPWQLA 124
Query: 124 PWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDG 183
PWHYLSQCVKEGGIAFKKAHGCEIWD ASQ+P+FN +FNDA+ACTAKI+M+A+VSHYK G
Sbjct: 125 PWHYLSQCVKEGGIAFKKAHGCEIWDLASQNPEFNRIFNDALACTAKIIMRAVVSHYKGG 184
Query: 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAIP 243
FD +++L DVGGGTGG LAEIVK+YPHIKGINFDLPHVVA AP G+ HVGG+ F+AIP
Sbjct: 185 FDDVETLVDVGGGTGGNLAEIVKAYPHIKGINFDLPHVVAAAPAYNGVSHVGGNFFEAIP 244
Query: 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFD 303
AD++FMKW+LHDW DE CVKILKNCR+A+P+K+GKL+LVEIV+Q +GN FGDMG+V D
Sbjct: 245 NADSIFMKWVLHDWGDEDCVKILKNCRKAMPEKTGKLILVEIVLQPEGNGQFGDMGMVSD 304
Query: 304 LVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYPQ 350
LVMFAH+TGGKERTE EW KLL++GGF R KII++PAL SIIEAY Q
Sbjct: 305 LVMFAHSTGGKERTELEWKKLLDEGGFPRYKIINIPALPSIIEAYLQ 351
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127144|ref|XP_002329411.1| alkaloid o-methyltransferase related [Populus trichocarpa] gi|222870461|gb|EEF07592.1| alkaloid o-methyltransferase related [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 252/347 (72%), Positives = 294/347 (84%), Gaps = 1/347 (0%)
Query: 4 HEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIP 63
E LLRGQ EVWQLMF FA+SMALK A+EL +ADI++S G P+TL Q+AS IDS C DIP
Sbjct: 6 EEALLRGQVEVWQLMFGFAESMALKCAIELGIADIINSLGGPVTLNQIASGIDSPCVDIP 65
Query: 64 YLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQWLLE 123
YLAR+MR LVRK +F H SDGG ETLY +T SKWLL DSE+SLAPM+L++N W L
Sbjct: 66 YLARIMRFLVRKRVFTQHIPSDGG-ETLYGLTDSSKWLLRDSEVSLAPMVLMQNYPWQLA 124
Query: 124 PWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDG 183
PWHYLSQCVKEGGIAFKKAHGCEIWD ASQ+P+FN +FNDA+ACTAKI+M+A+VSHYK G
Sbjct: 125 PWHYLSQCVKEGGIAFKKAHGCEIWDLASQNPEFNRIFNDALACTAKIIMRAVVSHYKGG 184
Query: 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAIP 243
FD +++L DVGGGTGG LAEIVK+YPHIKGINFDLPHVVA AP G+ HVGG F+AIP
Sbjct: 185 FDDVETLVDVGGGTGGNLAEIVKAYPHIKGINFDLPHVVAAAPAYNGVSHVGGSFFEAIP 244
Query: 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFD 303
AD++FMKW+LHDW DE CVKILKNCR+A+P+K+GKL+LVEIV+Q +GN FGDMG+V D
Sbjct: 245 NADSIFMKWVLHDWGDEDCVKILKNCRKAMPEKTGKLILVEIVLQPEGNGQFGDMGMVSD 304
Query: 304 LVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYPQ 350
LVMFAH+TGGKERTE EW KLLE+GGF R KII++PAL SIIEAY Q
Sbjct: 305 LVMFAHSTGGKERTELEWKKLLEEGGFPRYKIINIPALPSIIEAYLQ 351
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|429326472|gb|AFZ78576.1| caffeic acid O-methyltransferase [Populus tomentosa] | Back alignment and taxonomy information |
|---|
Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust.
Identities = 251/347 (72%), Positives = 294/347 (84%), Gaps = 1/347 (0%)
Query: 4 HEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIP 63
E+LLRGQ EVWQLMF FA+SMALK A+EL + DI++S G P+TL Q+AS IDS C DIP
Sbjct: 6 EEKLLRGQVEVWQLMFGFAESMALKCAIELGIPDIINSLGGPVTLNQIASGIDSPCVDIP 65
Query: 64 YLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQWLLE 123
YLAR+MR LVRK +F H SDGG ETLY +T SKWLL DSE+SLAPM+L++N W L
Sbjct: 66 YLARIMRFLVRKRVFTQHIPSDGG-ETLYGLTDSSKWLLRDSEVSLAPMVLMQNYPWQLA 124
Query: 124 PWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDG 183
PWHYLSQCVKEGGIAFKKAHGCEIWD ASQ+P+FN +FNDA+ACTAKI+M+A+VSHYK G
Sbjct: 125 PWHYLSQCVKEGGIAFKKAHGCEIWDLASQNPEFNRIFNDALACTAKIIMRAVVSHYKGG 184
Query: 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAIP 243
FD +++L DVGGGTGG LAEIVK+YPHIKGINFDLPHVVA AP G+ HVGG F+AIP
Sbjct: 185 FDDVETLVDVGGGTGGNLAEIVKAYPHIKGINFDLPHVVAAAPAYNGVSHVGGSFFEAIP 244
Query: 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFD 303
AD++FMKW+LHDW DE CVKILKNCR+A+P+K+GKL+LVEIV+Q +GN FGDMG+V D
Sbjct: 245 NADSIFMKWVLHDWGDEDCVKILKNCRKAMPEKTGKLILVEIVLQPEGNGQFGDMGMVSD 304
Query: 304 LVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYPQ 350
LVMFAH+TGGKERTE EW KLLE+GGF R KII++PAL SIIEAY Q
Sbjct: 305 LVMFAHSTGGKERTELEWKKLLEEGGFPRYKIINIPALPSIIEAYLQ 351
|
Source: Populus tomentosa Species: Populus tomentosa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255553833|ref|XP_002517957.1| o-methyltransferase, putative [Ricinus communis] gi|223542939|gb|EEF44475.1| o-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 228/346 (65%), Positives = 287/346 (82%), Gaps = 1/346 (0%)
Query: 5 EELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPY 64
E L GQA+VWQLMFAFADSMALK AVEL + DI+HSHG ITL Q+AS IDS+ PDIPY
Sbjct: 8 EASLIGQAQVWQLMFAFADSMALKCAVELHIPDIIHSHGKSITLSQIASSIDSTSPDIPY 67
Query: 65 LARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQWLLEP 124
L R+MR+LVR+ IF SDGG ETLY +TH+SKWL+HDS+ +LAPM+L+EN+ W + P
Sbjct: 68 LQRIMRLLVRRNIFTADHPSDGG-ETLYGLTHVSKWLVHDSDRTLAPMVLMENHPWTINP 126
Query: 125 WHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGF 184
WH SQCVK+GGIAF+KA+G EIWDFA+++P+FN +FN M+CTA++ ++A++ YKDGF
Sbjct: 127 WHCFSQCVKKGGIAFEKANGHEIWDFAARNPEFNKMFNGGMSCTARLTIRAILEGYKDGF 186
Query: 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAIPK 244
S++SL DVGGGTG + EIVKS+PHIKGIN+DL HVV+TAP EG+ HVGGDMF AIP
Sbjct: 187 CSMKSLVDVGGGTGDLVTEIVKSHPHIKGINYDLAHVVSTAPAYEGVCHVGGDMFQAIPN 246
Query: 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDL 304
ADAV MKWI+HDW DE CV+ILKNCR+AIP+K+GK+++V+IV+Q +GN +F D LVFDL
Sbjct: 247 ADAVIMKWIMHDWGDEDCVRILKNCRKAIPEKTGKVMIVDIVLQPEGNGLFDDTRLVFDL 306
Query: 305 VMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYPQ 350
+M AH++GGKERTE EW K+LE+GGF R +II +PAL SIIEAYP+
Sbjct: 307 LMIAHSSGGKERTEAEWKKILEEGGFPRYRIIKIPALTSIIEAYPE 352
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225447211|ref|XP_002277476.1| PREDICTED: (RS)-norcoclaurine 6-O-methyltransferase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 234/347 (67%), Positives = 282/347 (81%), Gaps = 3/347 (0%)
Query: 5 EELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPY 64
E +L+GQA +W+ MFAFADSMALK AVELR+ADI+HSH PITL Q+A+ IDS PDI
Sbjct: 21 ELMLQGQANIWRHMFAFADSMALKCAVELRIADIIHSHARPITLSQIATCIDSPSPDITC 80
Query: 65 LARLMRMLVRKGIF--AVHQSSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQWLL 122
LAR+MR LVR IF A SDGG ETLY +T SKWLLHD+ELSLAPM+L+EN+ L+
Sbjct: 81 LARIMRFLVRAKIFTAAPPPQSDGG-ETLYGLTPSSKWLLHDAELSLAPMVLMENHPSLM 139
Query: 123 EPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKD 182
PWH CVKEGGIAF+KAHG +IWD AS+ P+FN LFND MACTAKI +KA+++ YKD
Sbjct: 140 APWHCFGTCVKEGGIAFEKAHGHQIWDLASEKPEFNKLFNDGMACTAKISIKAVIAAYKD 199
Query: 183 GFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAI 242
GF SI +L DVGGGTGGA+AE+VK+YPHIKGINFDLPHVVATAP EG+ HVGGDMF++I
Sbjct: 200 GFGSIGTLVDVGGGTGGAVAEVVKAYPHIKGINFDLPHVVATAPAYEGVSHVGGDMFESI 259
Query: 243 PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVF 302
P ADA+FMKWILHDW+DE CVKILKNCR+AIP+K+GK+++V+ V++EDG F + LV
Sbjct: 260 PDADAIFMKWILHDWNDEDCVKILKNCRKAIPEKTGKVIIVDGVIREDGYEPFDETRLVL 319
Query: 303 DLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349
DLVM AHT+ G+ERTE EW KLLE+GGF R +I+ +P L IIEAYP
Sbjct: 320 DLVMMAHTSHGQERTEVEWKKLLEEGGFPRYRILKIPTLQMIIEAYP 366
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|300077149|gb|ADJ66851.1| O-methyltransferase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 232/347 (66%), Positives = 282/347 (81%), Gaps = 3/347 (0%)
Query: 5 EELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPY 64
E +L+GQA +W+ MFAFADSMALK AVELR+ADI+HSH PITL Q+A+ IDS PDI
Sbjct: 21 ELMLQGQANIWRHMFAFADSMALKCAVELRIADIIHSHARPITLSQIATCIDSPSPDITC 80
Query: 65 LARLMRMLVRKGIF--AVHQSSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQWLL 122
LAR+MR LVR IF A SDGG ETLY +T SKWLLHD+ELSLAPM+L+EN+ L+
Sbjct: 81 LARIMRFLVRAKIFTAAPPPQSDGG-ETLYGLTPSSKWLLHDAELSLAPMVLMENHPSLM 139
Query: 123 EPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKD 182
PWH CVKEGGIAF+KAHG +IWD AS+ P+FN LFND MACTAKI +KA+++ YKD
Sbjct: 140 APWHCFGTCVKEGGIAFEKAHGHQIWDLASEKPEFNKLFNDGMACTAKISIKAVIAAYKD 199
Query: 183 GFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAI 242
GF SI +L DVGGGTGGA+AE+VK+YPHIKGINFDLPHVVATAP +G+ HVGGDMF++I
Sbjct: 200 GFGSIGTLVDVGGGTGGAVAEVVKAYPHIKGINFDLPHVVATAPAYKGVSHVGGDMFESI 259
Query: 243 PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVF 302
P ADA+FMKWILHDW+DE CVKILKNCR+AIP+K+GK+++V+ V++EDG F + LV
Sbjct: 260 PDADAIFMKWILHDWNDEDCVKILKNCRKAIPEKTGKVIIVDGVIREDGYEPFDETRLVL 319
Query: 303 DLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349
DLVM AH++ G+ERTE EW KLLE+GGF R +I+ +P L IIEAYP
Sbjct: 320 DLVMMAHSSHGQERTEVEWKKLLEEGGFPRYRILKIPTLQMIIEAYP 366
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224103575|ref|XP_002334037.1| alkaloid o-methyltransferase related [Populus trichocarpa] gi|224124568|ref|XP_002319364.1| alkaloid o-methyltransferase related [Populus trichocarpa] gi|222839673|gb|EEE77996.1| alkaloid o-methyltransferase related [Populus trichocarpa] gi|222857740|gb|EEE95287.1| alkaloid o-methyltransferase related [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 216/346 (62%), Positives = 276/346 (79%), Gaps = 2/346 (0%)
Query: 5 EELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPY 64
E + Q E++QL F DSMALK AVELRL +I++SHG PI+L Q+AS I+S DI Y
Sbjct: 7 EAFFKSQFEIFQLSLGFVDSMALKCAVELRLPEIINSHGRPISLSQIASGINSPSSDISY 66
Query: 65 LARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQWLLEP 124
LAR+MR LVRK IF H SDGG ETL+ + S+ L+HDSE SL +I ++++ W L
Sbjct: 67 LARIMRYLVRKEIFTAHPPSDGG-ETLFGLNQKSRMLMHDSERSLVSIITMQHSSWFLAA 125
Query: 125 WHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGF 184
WH LSQC+KEGG AF KAHGCE+WDFAS++P+ N +FN+AMACT+ I M+A++SHYKDGF
Sbjct: 126 WHCLSQCIKEGGTAFSKAHGCELWDFASRNPEVNRIFNEAMACTSNITMRAILSHYKDGF 185
Query: 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAIPK 244
++I+SL DV GG GG +AEIV++YPHI+GINFDLPHVVATAP EG+ HV G+MF+AIP
Sbjct: 186 NNIRSLVDVAGGIGGHVAEIVRAYPHIEGINFDLPHVVATAPKYEGVSHVAGNMFEAIPN 245
Query: 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGN-NIFGDMGLVFD 303
ADA+F++ ILHDW DE+CV+IL+NC++AIP+K+GKL++V+IV+ D + + F D+ +V D
Sbjct: 246 ADAIFIQRILHDWTDESCVEILRNCKKAIPEKTGKLIIVDIVLPTDDHCDQFDDIRMVMD 305
Query: 304 LVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349
LVMFA TTGGKERTEQEW KLLE+GGF R KII +PAL SIIEAYP
Sbjct: 306 LVMFALTTGGKERTEQEWKKLLEEGGFSRYKIIKIPALESIIEAYP 351
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|300077147|gb|ADJ66850.1| O-methyltransferase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 227/350 (64%), Positives = 285/350 (81%), Gaps = 5/350 (1%)
Query: 5 EELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPY 64
E +L+GQA +W+ MFAFADSMALK AVELR+ADI+HS PITL Q+A+ IDS PDI
Sbjct: 21 ELMLQGQANIWRHMFAFADSMALKCAVELRIADIIHSQARPITLSQIATCIDSPSPDITC 80
Query: 65 LARLMRMLVRKGIF--AVHQSSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQWLL 122
LAR+MR LVR IF A SDGG ETLY +T SKWLLHD++LSLAPM+L+EN+ +L+
Sbjct: 81 LARIMRFLVRAKIFTAAPPPQSDGG-ETLYGLTPSSKWLLHDADLSLAPMVLMENHPFLM 139
Query: 123 EPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKD 182
PWH CVKEGGIAF+KAHG +IWDFAS++P+FN LFND MACTAK+VM +V+ YKD
Sbjct: 140 APWHCFGTCVKEGGIAFEKAHGRQIWDFASENPEFNKLFNDGMACTAKVVMGEVVAAYKD 199
Query: 183 GFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAI 242
GF SI++L DVGGGTGGA+AE+VK+YPHIKGINFDLPHVVA+AP EG+ HVGGDMF++I
Sbjct: 200 GFGSIRTLVDVGGGTGGAVAEVVKAYPHIKGINFDLPHVVASAPAYEGVSHVGGDMFESI 259
Query: 243 PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVF 302
P ADA+FMKWI+HDW DE C+KILKNCR+A+P+K+GK+++V+ V++ED ++ F LVF
Sbjct: 260 PNADAIFMKWIMHDWSDEDCIKILKNCRKAVPEKTGKIIIVDGVIREDSDDPFDKTRLVF 319
Query: 303 DLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKI--ISMPALYSIIEAYPQ 350
DL+M AH++ GKER+E EW K+LE+GGF R +I IS+ L IIEAYP+
Sbjct: 320 DLLMMAHSSNGKERSEVEWKKVLEEGGFPRYRIMEISISTLPMIIEAYPE 369
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|32440935|dbj|BAC78828.1| caffeic acid O-methyltransferase [Rosa chinensis var. spontanea] | Back alignment and taxonomy information |
|---|
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/355 (62%), Positives = 274/355 (77%), Gaps = 9/355 (2%)
Query: 2 EVHEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCP- 60
E+ E LRGQA+VW+ M FADSMALKSAVELR+ DI+HSH +TL ++ DS+ P
Sbjct: 6 ELDEASLRGQADVWKYMLRFADSMALKSAVELRIPDIIHSHDHALTLSEITCSFDSASPS 65
Query: 61 -DIPYLARLMRMLVRKGIFAVHQSSDGGD--ETLYKMTHISKWLLHDSELSLAPMILVEN 117
DI L+R+MR+LVR+ IF DGGD ETLY +TH S+WLLHDSE +LAPM+L+E
Sbjct: 66 PDITCLSRIMRLLVRRNIFTAQP--DGGDSGETLYGLTHSSRWLLHDSEFTLAPMVLMET 123
Query: 118 NQWLLEPWHYLSQCVKEGG-IAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKAL 176
N L+EPWH SQCVK+G AF+KAHG +IW F S+ P+FN LFND M+CTAKI MKA+
Sbjct: 124 NSTLMEPWHCFSQCVKQGTPCAFEKAHGRDIWQFFSEKPEFNRLFNDGMSCTAKITMKAM 183
Query: 177 VSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGG 236
++ YK GFD++ +L DVGGGTG A+AEIVK YP IKGINFDLPHVVA AP G+ HVGG
Sbjct: 184 LTGYKGGFDNVATLVDVGGGTGSAVAEIVKLYPSIKGINFDLPHVVAIAPEYHGVSHVGG 243
Query: 237 DMFDA--IPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNI 294
DMFD IP DA+FMKWI+HDW D CVKILKNCR+AIP++SGK+++V++V++ +G+ +
Sbjct: 244 DMFDGGNIPNTDAIFMKWIMHDWSDNDCVKILKNCRKAIPERSGKVIIVDVVLEPNGDGM 303
Query: 295 FGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349
F D GLVFDL+M AH +GGKERTE EW K+LE GF R KII +PAL SIIEAYP
Sbjct: 304 FDDTGLVFDLLMIAHASGGKERTESEWKKMLELAGFPRYKIIKIPALSSIIEAYP 358
|
Source: Rosa chinensis var. spontanea Species: Rosa chinensis Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 350 | ||||||
| TAIR|locus:2132806 | 382 | AT4G35160 [Arabidopsis thalian | 0.977 | 0.895 | 0.397 | 2.4e-67 | |
| TAIR|locus:2153423 | 363 | OMT1 "AT5G54160" [Arabidopsis | 0.911 | 0.878 | 0.417 | 2.4e-67 | |
| UNIPROTKB|Q6VMW0 | 366 | OMT2 "8-hydroxyquercetin 8-O-m | 0.982 | 0.939 | 0.406 | 2.6e-63 | |
| UNIPROTKB|B0EXJ8 | 355 | 16OMT "Tabersonine 16-O-methyl | 0.991 | 0.977 | 0.389 | 1.4e-62 | |
| TAIR|locus:2132801 | 325 | AT4G35150 [Arabidopsis thalian | 0.594 | 0.64 | 0.430 | 2.6e-59 | |
| UNIPROTKB|Q8GSN1 | 348 | Q8GSN1 "Myricetin O-methyltran | 0.974 | 0.979 | 0.384 | 4.5e-59 | |
| TAIR|locus:2204695 | 381 | AT1G77530 [Arabidopsis thalian | 0.974 | 0.895 | 0.386 | 4.5e-59 | |
| UNIPROTKB|A8QW53 | 374 | OMT3 "5-pentadecatrienyl resor | 0.754 | 0.705 | 0.383 | 1.8e-58 | |
| TAIR|locus:2204680 | 381 | AT1G77520 [Arabidopsis thalian | 0.974 | 0.895 | 0.375 | 1.9e-58 | |
| TAIR|locus:2015223 | 381 | AT1G63140 [Arabidopsis thalian | 0.974 | 0.895 | 0.375 | 3.2e-58 |
| TAIR|locus:2132806 AT4G35160 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 145/365 (39%), Positives = 222/365 (60%)
Query: 2 EVHEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGS--PITLPQLASRIDSSC 59
+V +E + ++W+ +F FAD A K A++L++ + + +H S P+TL +L+S + +S
Sbjct: 21 KVLDEEAKASLDIWKYVFGFADIAAAKCAIDLKIPEAIENHPSSQPVTLAELSSAVSAS- 79
Query: 60 PDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL---HDSELSLAPMILVE 116
P +L R+MR LV +GIF + DG T Y T +S+ L+ D + SLAP +L E
Sbjct: 80 PS--HLRRIMRFLVHQGIFKEIPTKDGL-ATGYVNTPLSRRLMITRRDGK-SLAPFVLFE 135
Query: 117 NNQWLLEPWHYLSQCVKE---GGIA--FKKAHGCEIWDFASQSPQFNNLFNDAMACTAKI 171
+L PW LS V G F HG ++W FA +P +++ N+AMAC A+
Sbjct: 136 TTPEMLAPWLRLSSVVSSPVNGSTPPPFDAVHGKDVWSFAQDNPFLSDMINEAMACDARR 195
Query: 172 VMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGI 231
V+ + FD + ++ DVGGGTG + +VK +P IKG NFDLPHV+ A V +G+
Sbjct: 196 VVPRVAGACHGLFDGVTTMVDVGGGTGETMGMLVKEFPWIKGFNFDLPHVIEVAEVLDGV 255
Query: 232 FHVGGDMFDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDG 291
+V GDMFD+IP DA+F+KW+LHDW D+ C+KILKNC++A+P GK+++VE V+ E+
Sbjct: 256 ENVEGDMFDSIPACDAIFIKWVLHDWGDKDCIKILKNCKEAVPPNIGKVLIVESVIGENK 315
Query: 292 NNIFGD--------MGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYS 343
+ D + L+ D+VM AHT+ GKERT +EW +L++ GF R ++ + + S
Sbjct: 316 KTMIVDERDEKLEHVRLMLDMVMMAHTSTGKERTLKEWDFVLKEAGFARYEVRDIDDVQS 375
Query: 344 IIEAY 348
+I AY
Sbjct: 376 LIIAY 380
|
|
| TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 136/326 (41%), Positives = 204/326 (62%)
Query: 16 QLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPY-LARLMRMLVR 74
QL A MALKSA+EL L +IM +GSP++ ++AS++ + P+ P L R++R+L
Sbjct: 25 QLASASVLPMALKSALELDLLEIMAKNGSPMSPTEIASKLPTKNPEAPVMLDRILRLLTS 84
Query: 75 KGIFAVHQSSDGGD--ETLYKMTHISKWLLHDSE-LSLAPMILVENNQWLLEPWHYLSQC 131
+ GD E +Y + + K+L + + +S+A + L+ ++ L+E W++L
Sbjct: 85 YSVLTCSNRKLSGDGVERIYGLGPVCKYLTKNEDGVSIAALCLMNQDKVLMESWYHLKDA 144
Query: 132 VKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGFDSIQSLA 191
+ +GGI F KA+G +++ P+FN +FN+ M+ + I MK ++ YK GF+ + SL
Sbjct: 145 ILDGGIPFNKAYGMSAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETYK-GFEGLTSLV 203
Query: 192 DVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAIPKADAVFMK 251
DVGGG G L IV YP++KGINFDLPHV+ AP GI HVGGDMF ++PK DA+FMK
Sbjct: 204 DVGGGIGATLKMIVSKYPNLKGINFDLPHVIEDAPSHPGIEHVGGDMFVSVPKGDAIFMK 263
Query: 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVF-DLVMFAHT 310
WI HDW DE CVK LKNC +++P+ GK++L E ++ E ++ +V D +M AH
Sbjct: 264 WICHDWSDEHCVKFLKNCYESLPE-DGKVILAECILPETPDSSLSTKQVVHVDCIMLAHN 322
Query: 311 TGGKERTEQEWMKLLEQGGFHRCKII 336
GGKERTE+E+ L + GF K++
Sbjct: 323 PGGKERTEKEFEALAKASGFKGIKVV 348
|
|
| UNIPROTKB|Q6VMW0 OMT2 "8-hydroxyquercetin 8-O-methyltransferase" [Mentha x piperita (taxid:34256)] | Back alignment and assigned GO terms |
|---|
Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
Identities = 145/357 (40%), Positives = 207/357 (57%)
Query: 5 EELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPY 64
+ELL QA VW ++++ +SM+LK A++L + D +H HG+PITL QLA ++ +
Sbjct: 11 QELLEAQAHVWNHIYSYINSMSLKCAIQLGIPDAIHKHGNPITLSQLADALNINKAKSHG 70
Query: 65 LARLMRMLVRKGIF---AVHQSSDGGDET----LYKMTHISKWLLHDSELSLAPMILVEN 117
L RLMR+LV G F V +G DE Y +T S+ LL LS+AP L +
Sbjct: 71 LFRLMRILVHSGFFDKVKVKVKVEGEDEEEEEDAYSLTPASRLLLRSEPLSVAPFALAMS 130
Query: 118 NQWLLEPWHYLSQCVKEGGIA-FKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKAL 176
+ E WH+LS+ + +A F +G ++A + N LFN+AMAC A V L
Sbjct: 131 DPVYTETWHHLSEWFRNDAVAAFDTKYGMTFPEYAVADDRLNVLFNEAMACDAGFVNSIL 190
Query: 177 VSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGG 236
+ ++ FD ++S+ DVGGGTG I ++P ++ DLP+VV E + V G
Sbjct: 191 TTECREIFDGLESMVDVGGGTGATAKGIAAAFPGMECTVLDLPNVVGGLKGSENLSFVSG 250
Query: 237 DMFDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSG---KLVLVEIVVQEDGNN 293
DMFD IP ADA+FMK+ILHDW+DE CVKILK C++AI + K++LVEIV++++
Sbjct: 251 DMFDFIPHADAIFMKFILHDWNDEECVKILKKCKEAISRSNNSCRKIILVEIVMEDEKET 310
Query: 294 IFG-DMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349
+ L FD+ M A TG KER+E+EW KL GF KI + L S+IE +P
Sbjct: 311 HEATETKLFFDMQMLAIITG-KERSEKEWGKLFFDAGFTNYKITRVLGLRSVIEVFP 366
|
|
| UNIPROTKB|B0EXJ8 16OMT "Tabersonine 16-O-methyltransferase" [Catharanthus roseus (taxid:4058)] | Back alignment and assigned GO terms |
|---|
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 139/357 (38%), Positives = 206/357 (57%)
Query: 1 MEVHEELLRG-QAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSC 59
M+V E RG QA++W +F S +LK AV+L + D + +HG PITL +L + +
Sbjct: 1 MDVQSEEFRGAQAQIWSQSCSFITSASLKCAVKLGIPDTIDNHGKPITLSELTNALVPPV 60
Query: 60 -PD-IPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLHDSELSLAPMILVEN 117
P P++ RLMR+L + G F + DG E LY +T S+ LL L+L ++L
Sbjct: 61 HPSKAPFIYRLMRVLAKNG-FCSEEQLDGETEPLYSLTPSSRILLKKEPLNLRGIVLTMA 119
Query: 118 NQWLLEPWHYLS---QCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMK 174
+ L+ W LS Q + AF+ AHG W ++S+ + FN+AMA ++++ K
Sbjct: 120 DPVQLKAWESLSDWYQNEDDSSTAFETAHGKNFWGYSSEHMEHAEFFNEAMASDSQLISK 179
Query: 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHV 234
L+ YK F+ + SL D+GGGTG I K++P +K FDLPHVVA E + V
Sbjct: 180 LLIGEYKFLFEGLASLVDIGGGTGTIAKAIAKNFPQLKCTVFDLPHVVANLESKENVEFV 239
Query: 235 GGDMFDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDG-NN 293
GDMF+ IP A+A+F+KWILHDW+DE CVKILK+C++AIP K GK++++++V+ D ++
Sbjct: 240 AGDMFEKIPSANAIFLKWILHDWNDEDCVKILKSCKKAIPAKGGKVIIIDMVMYSDKKDD 299
Query: 294 IFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII-SMPALYSIIEAYP 349
D+ M + KER E+EW L ++ GF KI + S+IE YP
Sbjct: 300 HLVKTQTSMDMAMLVNFAA-KERCEKEWAFLFKEAGFSDYKIYPKLDFTRSLIEVYP 355
|
|
| TAIR|locus:2132801 AT4G35150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 484 (175.4 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 93/216 (43%), Positives = 137/216 (63%)
Query: 141 KAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGA 200
K HG ++W FA + + L N+AMAC A+ V+ + + FD + ++ DVGGGTG
Sbjct: 108 KLHGKDLWAFAQDNLCHSQLINEAMACDARRVVPRVAGACQGLFDGVATVVDVGGGTGET 167
Query: 201 LAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAIPKADAVFMKWILHDWDDE 260
+ +VK +P IKG NFDLPHV+ A V +G+ +V GDMFD+IP +DAV +KW+LHDW D+
Sbjct: 168 MGILVKEFPWIKGFNFDLPHVIEVAQVLDGVENVEGDMFDSIPASDAVIIKWVLHDWGDK 227
Query: 261 ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGD--------MGLVFDLVMFAHTTG 312
C+KILKNC++A+ GK+++VE V+ E N + + + L D+VM HT+
Sbjct: 228 DCIKILKNCKEAVLPNIGKVLIVECVIGEKKNTMIAEERDDKLEHVRLQLDMVMMVHTST 287
Query: 313 GKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAY 348
GKERT +EW +L + GF R ++ + S+I AY
Sbjct: 288 GKERTLKEWDFVLTEAGFARYEVRDFDDVQSLIIAY 323
|
|
| UNIPROTKB|Q8GSN1 Q8GSN1 "Myricetin O-methyltransferase" [Catharanthus roseus (taxid:4058)] | Back alignment and assigned GO terms |
|---|
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 137/356 (38%), Positives = 197/356 (55%)
Query: 1 MEVHE-ELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSC 59
ME+ E+ QA + +F+F +LK AV+L + D +HSHG P+ L L + + +
Sbjct: 1 MELQSSEIRNAQAHFFTQVFSFTSMSSLKCAVQLGIPDAIHSHGKPMALSDLTNSLPINP 60
Query: 60 PDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQ 119
PY+ RLMR+LV G F+ + + +Y +T ++ LL + L+ M+L N
Sbjct: 61 SKAPYIYRLMRILVAAGYFSEEEKN------VYSLTPFTRLLLKNDPLNSISMVLGVNQI 114
Query: 120 WLLEPWHYLSQCVKEGGI-AFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVS 178
L+ W+ +S+ + + AF+ AHG WDF ++ N F+ MA + +V K L+
Sbjct: 115 AELKAWNAMSEWFQNEDLTAFETAHGKNFWDFGAEDKYGKN-FDGVMAADSILVSKMLIP 173
Query: 179 HYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDM 238
+ F+ + SL DVGGGTG I KS+P +K FDLPHVVA E + VGGDM
Sbjct: 174 EFNYLFEGLDSLVDVGGGTGTIAKAIAKSFPDLKCTVFDLPHVVANLESTENLEFVGGDM 233
Query: 239 FDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKS--GKLVLVEIVVQEDG---NN 293
F+ IP A+A+ +KWILHDW DE CVK+LK CR+AIP+K GK++L+E V+ + N
Sbjct: 234 FEKIPSANAILLKWILHDWKDEECVKVLKMCRKAIPEKEKGGKVILIETVLMDSKKHENE 293
Query: 294 IFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349
+ D+ M T KERTE+EW L + GF KI M S IE YP
Sbjct: 294 EAVKAQISSDIDMMVFFTA-KERTEEEWATLFREAGFSGYKIFPMIDFRSPIEVYP 348
|
|
| TAIR|locus:2204695 AT1G77530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 139/360 (38%), Positives = 217/360 (60%)
Query: 2 EVHEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMH--SHGSPITLPQLASRIDS-- 57
E+ E+++ QAE ++ A A M LK+A+EL + D + S+G+ ++ ++A + +
Sbjct: 23 EIDEKMVSLQAE--SIVNAVAFPMVLKAALELGVIDTIAAASNGTWLSPSEIAVSLPNKP 80
Query: 58 SCPDIPYLA-RLMRMLVRKGIF--AVHQSSDGGD----ETLYKMTHISKWLLHDSELS-- 108
+ P+ P L R++R+LV I + +S + G E +Y I K+ L DS+ S
Sbjct: 81 TNPEAPVLLDRMLRLLVSHSILKCCMVESRENGQTGKIERVYAAEPICKYFLKDSDGSGS 140
Query: 109 LAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACT 168
L+ ++L+ ++Q +L+ W L + EG AF AH ++++ S QF+ LF+ AM+ +
Sbjct: 141 LSSLLLLLHSQVILKTWTNLKDVILEGKDAFSSAHDMRLFEYISSDDQFSKLFHRAMSES 200
Query: 169 AKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVC 228
+ +VMK ++ Y+ GF+ + +L DVGGG G L I YPHIKG+NFDL V+ AP
Sbjct: 201 STMVMKKVLEEYR-GFEDVNTLVDVGGGIGTILGLITSKYPHIKGVNFDLAQVLTQAPFY 259
Query: 229 EGIFHVGGDMFDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV- 287
G+ HV GDMF +PK DA+FMKWILHDW DE C+KILKNC +++P+K GK+++VE++
Sbjct: 260 PGVKHVSGDMFIEVPKGDAIFMKWILHDWGDEDCIKILKNCWKSLPEK-GKVIIVEMITP 318
Query: 288 QEDGNNIFG-DMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIE 346
E N F + L DL+M +GGKER+ ++ L GF C+II + YS+IE
Sbjct: 319 MEPKPNDFSCNTVLGMDLLMLTQCSGGKERSLSQFENLAFASGFLLCEIICLSYSYSVIE 378
|
|
| UNIPROTKB|A8QW53 OMT3 "5-pentadecatrienyl resorcinol O-methyltransferase" [Sorghum bicolor (taxid:4558)] | Back alignment and assigned GO terms |
|---|
Score = 464 (168.4 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 109/284 (38%), Positives = 158/284 (55%)
Query: 83 SSDGGDETLYKMTHISKWLLHDSE----LSLAPMILVENNQWLLEP-------WHYLSQC 131
S G E +YK+T S LL SE SL+PM+ + + P W +
Sbjct: 94 SESDGREPVYKLTTASS-LLVSSESSATASLSPMLNHVLSPFRDSPLSMGLTAWFRHDED 152
Query: 132 VKEGGIA-FKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGFDSIQSL 190
+ G+ F +G +W+ + N LFN+AMA + +M+ L+ + + F I SL
Sbjct: 153 EQAPGMCPFTLMYGTTLWEVCRRDDAINALFNNAMAADSNFLMQILLKEFSEVFLGIDSL 212
Query: 191 ADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCE--GIFHVGGDMFDAIPKADAV 248
DV GG GGA I ++P +K DLPHVVA AP + VGGDMF++IP A+ V
Sbjct: 213 VDVAGGVGGATMAIAAAFPCLKCTVLDLPHVVAKAPSSSIGNVQFVGGDMFESIPPANVV 272
Query: 249 FMKWILHDWDDEACVKILKNCRQAIP--DKSGKLVLVEIVVQEDGNNI-FGDMGLVFDLV 305
+KWILHDW ++ C+KILKNC+QAIP D GK++++++VV D ++ + +++DL
Sbjct: 273 LLKWILHDWSNDECIKILKNCKQAIPSRDAGGKIIIIDVVVGSDSSDTKLLETQVIYDLH 332
Query: 306 MFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349
+ GG ER EQEW K+ + GF KI+ + L SIIE YP
Sbjct: 333 LMK--IGGVERDEQEWKKIFLEAGFKDYKIMPILGLRSIIELYP 374
|
|
| TAIR|locus:2204680 AT1G77520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 135/360 (37%), Positives = 206/360 (57%)
Query: 2 EVHEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITL-P-QLASRIDS-- 57
EV E+++ QAE ++ A M LK+A EL + D + + G+ L P ++A + +
Sbjct: 23 EVDEKMVSLQAE--SIVNTVAFPMVLKAAFELGVIDTIAAAGNDTWLSPCEIACSLPTKP 80
Query: 58 SCPDIPYLA-RLMRMLVRKGIFAVHQSSDGGD------ETLYKMTHISKWLLHDSEL--S 108
+ P+ P L R++ +LV I G + E +Y + K+ L DS+ S
Sbjct: 81 TNPEAPVLLDRMLSLLVSHSILKCRMIETGENGRTGKIERVYAAEPVCKYFLRDSDGTGS 140
Query: 109 LAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACT 168
L P+ ++ + Q + W L + EG AF AHG +I+++ + F LFN AM+
Sbjct: 141 LVPLFMLLHTQVFFKTWTNLKDVILEGRDAFNSAHGMKIFEYINSDQPFAELFNRAMSEP 200
Query: 169 AKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVC 228
+ ++MK ++ Y+ GF+ + +L DVGGG G L + YPHIKG+NFDL V+ AP
Sbjct: 201 STMIMKKVLDVYR-GFEDVNTLVDVGGGNGTVLGLVTSKYPHIKGVNFDLAQVLTQAPFY 259
Query: 229 EGIFHVGGDMFDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQ 288
G+ HV GDMF +PK DAVFMKWILHDW DE C+KILKNC +++P+K GK+++VE V
Sbjct: 260 PGVEHVSGDMFVEVPKGDAVFMKWILHDWGDEDCIKILKNCWKSLPEK-GKIIIVEFVTP 318
Query: 289 ED--GNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIE 346
++ G ++ + DL+M +GGKER+ ++ L GF RC+II + YS+IE
Sbjct: 319 KEPKGGDLSSNTVFAMDLLMLTQCSGGKERSLSQFENLAFASGFLRCEIICLAYSYSVIE 378
|
|
| TAIR|locus:2015223 AT1G63140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 135/360 (37%), Positives = 211/360 (58%)
Query: 4 HEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITL-P-QLASRIDS--SC 59
HE+ + QAE +++ A M LK+A+EL + D++ S + L P ++A + + +
Sbjct: 25 HEDTVSLQAE--RILHAMTFPMVLKTALELGVIDMITSVDDGVWLSPSEIALGLPTKPTN 82
Query: 60 PDIPYLARLMRMLVRKGIFAVHQSSDGGD-------ETLYKMTHISKWLLH--DSELSLA 110
P+ P L M +L+ +++ + GD E +Y + + L+ D SLA
Sbjct: 83 PEAPVLLDRMLVLLASHSILKYRTVETGDNIGSRKTERVYAAEPVCTFFLNRGDGLGSLA 142
Query: 111 PMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAK 170
+ +V + ++PW +L + EG AF AHG ++ + QF +FN AM+ +
Sbjct: 143 TLFMVLQGEVCMKPWEHLKDMILEGKDAFTSAHGMRFFELIGSNEQFAEMFNRAMSEAST 202
Query: 171 IVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEG 230
++MK ++ YK GF+ + +L DVGGG G + ++ YPHIKGINFDL V+A AP +G
Sbjct: 203 LIMKKVLEVYK-GFEDVNTLVDVGGGIGTIIGQVTSKYPHIKGINFDLASVLAHAPFNKG 261
Query: 231 IFHVGGDMFDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQED 290
+ HV GDMF IPK DA+FMKWILHDW DE CVKILKN +++P+K GK+++VE+V E+
Sbjct: 262 VEHVSGDMFKEIPKGDAIFMKWILHDWTDEDCVKILKNYWKSLPEK-GKVIIVEVVTPEE 320
Query: 291 G--NNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAY 348
N+I ++ D++M A ++GGKER+ ++ L GF RC+II YS+IE +
Sbjct: 321 PKINDISSNIVFGMDMLMLAVSSGGKERSLSQFETLASDSGFLRCEIICHAFSYSVIELH 380
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FK25 | OMT1_ARATH | 2, ., 1, ., 1, ., 7, 6 | 0.4171 | 0.9114 | 0.8787 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 350 | |||
| pfam00891 | 239 | pfam00891, Methyltransf_2, O-methyltransferase | 1e-93 | |
| pfam08100 | 50 | pfam08100, Dimerisation, Dimerisation domain | 5e-12 | |
| TIGR02716 | 306 | TIGR02716, C20_methyl_CrtF, C-20 methyltransferase | 3e-08 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 5e-05 |
| >gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase | Back alignment and domain information |
|---|
Score = 278 bits (713), Expect = 1e-93
Identities = 112/241 (46%), Positives = 157/241 (65%), Gaps = 4/241 (1%)
Query: 86 GGDETLYKMTHISKWLLHDSEL-SLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHG 144
Y +T SK L+ + SLAP++L+ + LLE W +L V+EGG F++A G
Sbjct: 1 TRGGEDYGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESWAHLKDAVREGGPPFERAFG 60
Query: 145 CEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEI 204
+++ P+FN +FN AMA +++VMK ++ D F + SL DVGGGTG A I
Sbjct: 61 MPFFEYLGADPEFNRVFNRAMAAHSRLVMKKILETAFD-FSGLSSLVDVGGGTGALAAAI 119
Query: 205 VKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAIPKADAVFMKWILHDWDDEACVK 264
V++YPHIKGI FDLPHV+A AP + + VGGD F+++P+ADA+ +KW+LHDW DE CVK
Sbjct: 120 VRAYPHIKGIVFDLPHVIADAPSADRVEFVGGDFFESVPEADAILLKWVLHDWSDEDCVK 179
Query: 265 ILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKL 324
ILK C +A+P GK+++VE+V+ ED ++ L+ DL M GGKERTE+EW KL
Sbjct: 180 ILKRCYEALPPG-GKVIVVEMVLPEDPDDDLETEVLLLDLNMLVL-NGGKERTEKEWRKL 237
Query: 325 L 325
L
Sbjct: 238 L 238
|
This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239 |
| >gnl|CDD|219719 pfam08100, Dimerisation, Dimerisation domain | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 5e-12
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 25 MALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPD-IPYLARLMRMLV 73
M LK A+EL + DI+ HG P++ +LAS++ + P+ L RL+R+L
Sbjct: 1 MVLKCAIELGIPDIIAKHGKPLSPSELASKLPTVNPEAPVMLDRLLRLLA 50
|
This domain is found at the N-terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins. Length = 50 |
| >gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Score = 54.3 bits (130), Expect = 3e-08
Identities = 56/286 (19%), Positives = 117/286 (40%), Gaps = 48/286 (16%)
Query: 23 DSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVR-KGIFAVH 81
+ +K+A+EL L M P L LA+ S P RL +L + + ++
Sbjct: 3 EFSCMKAAIELDLFSHMAE--GPKDLATLAADTGSVPP------RLEMLLETLRQMRVIN 54
Query: 82 QSSDGGDETLYKMTHISKWLLHDSE----LSLAPMILVENNQWLLEPWHYLSQCVKEGGI 137
+ +T + ++ + L P + + +L + ++ G
Sbjct: 55 LEDGK-----WSLTEFADYMFSPTPKEPNLHQTP--VAKAMAFLADDFYMGLSQAVRGQK 107
Query: 138 AFKKAHGCEIWDFASQSP-----QFNNLFNDAM-ACTAKIVMKALVSHYKDGFDSIQSLA 191
+F Q P + +NL+ + + AK ++ L+ K D ++ +
Sbjct: 108 -----------NFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMI 154
Query: 192 DVGGGTGGALAEIVKSYPHIKGINFDLPHV-------VATAPVCEGIFHVGGDMF-DAIP 243
DVGGG G A ++K +P + +LP A V + + + D++ ++ P
Sbjct: 155 DVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP 214
Query: 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQE 289
+ADAV IL+ +++ + K A+ G+L+++++V+ +
Sbjct: 215 EADAVLFCRILYSANEQLSTIMCKKAFDAMR-SGGRLLILDMVIDD 259
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-05
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 16/107 (14%)
Query: 189 SLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATA------PVCEGI-FHVGG--DM 238
+ D+G GTG E+ + +P + DL P ++ A + I F G D
Sbjct: 4 RVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPDA 63
Query: 239 FDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285
D + DAVF+ D + +L + G+LVL +
Sbjct: 64 LDLLEGFDAVFIGGGGGDLLE-----LLDALASLLKPG-GRLVLNAV 104
|
Protein in this family function as methyltransferases. Length = 104 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 350 | |||
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 100.0 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 100.0 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.81 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.8 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.79 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.78 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.77 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.77 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.76 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.74 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.72 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.72 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.71 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.71 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.7 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.69 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.69 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.68 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.68 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.67 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.67 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.66 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.65 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.65 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.64 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.62 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.62 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.62 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.61 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.6 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.59 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.58 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.58 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.57 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.56 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.56 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.56 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.55 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.54 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.54 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.53 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.52 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.52 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.51 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.51 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.51 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.51 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.51 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.5 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.5 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.5 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.49 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.49 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.47 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.45 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.45 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.45 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.44 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.44 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.43 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.42 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.42 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.41 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.4 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.39 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.37 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.37 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.35 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.31 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.3 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.29 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.28 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.28 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.28 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.28 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.27 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.25 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.25 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.24 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.22 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.22 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.21 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.21 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.21 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.2 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.2 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.19 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.18 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.17 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.17 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.15 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.14 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.14 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.14 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.12 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.11 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.11 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.1 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.1 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.09 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.09 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.09 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.06 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.05 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.04 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.04 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.01 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.01 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.0 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.0 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.98 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.97 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.96 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.95 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.95 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.93 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.93 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.92 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.92 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.91 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.91 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.9 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.89 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.88 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.85 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.83 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.83 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.83 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.8 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.8 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.8 | |
| PLN02366 | 308 | spermidine synthase | 98.79 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.75 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.74 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.74 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.71 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.69 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.68 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.68 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.67 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.65 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.63 | |
| PF08100 | 51 | Dimerisation: Dimerisation domain; InterPro: IPR01 | 98.62 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.62 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.59 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.59 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.56 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.56 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.55 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.53 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.52 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.52 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.51 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.5 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.47 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.46 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.45 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.4 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.39 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.38 | |
| PLN02476 | 278 | O-methyltransferase | 98.38 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.37 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.34 | |
| PLN02823 | 336 | spermine synthase | 98.34 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.33 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.32 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.31 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.31 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.28 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.25 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.24 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.24 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.22 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.21 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.18 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.18 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.18 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.15 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.15 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.14 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.13 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.11 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.1 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.09 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.04 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.03 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.01 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.01 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.99 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.98 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.97 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.96 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.96 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.94 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.93 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.93 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.86 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.86 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.84 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.82 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.77 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.76 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.74 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.68 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.64 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.63 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.63 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.6 | |
| PF09339 | 52 | HTH_IclR: IclR helix-turn-helix domain; InterPro: | 97.6 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.57 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.54 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.5 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.48 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.43 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.42 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.4 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.4 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.37 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.35 | |
| smart00550 | 68 | Zalpha Z-DNA-binding domain in adenosine deaminase | 97.32 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.3 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.3 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.29 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.26 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.25 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.19 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.16 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.15 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.14 | |
| smart00346 | 91 | HTH_ICLR helix_turn_helix isocitrate lyase regulat | 97.13 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.13 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.12 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.12 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.09 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.07 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.05 | |
| PF12840 | 61 | HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_ | 96.95 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 96.94 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 96.94 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.87 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 96.87 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.82 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.77 | |
| COG1414 | 246 | IclR Transcriptional regulator [Transcription] | 96.77 | |
| PF02082 | 83 | Rrf2: Transcriptional regulator; InterPro: IPR0009 | 96.64 | |
| PF01022 | 47 | HTH_5: Bacterial regulatory protein, arsR family; | 96.62 | |
| PRK11569 | 274 | transcriptional repressor IclR; Provisional | 96.61 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.6 | |
| PF01978 | 68 | TrmB: Sugar-specific transcriptional regulator Trm | 96.6 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.55 | |
| TIGR02431 | 248 | pcaR_pcaU beta-ketoadipate pathway transcriptional | 96.54 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.53 | |
| PRK10163 | 271 | DNA-binding transcriptional repressor AllR; Provis | 96.53 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.47 | |
| cd00092 | 67 | HTH_CRP helix_turn_helix, cAMP Regulatory protein | 96.46 | |
| PF13463 | 68 | HTH_27: Winged helix DNA-binding domain; PDB: 3GFL | 96.4 | |
| PF13412 | 48 | HTH_24: Winged helix-turn-helix DNA-binding; PDB: | 96.38 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 96.37 | |
| PRK09834 | 263 | DNA-binding transcriptional activator MhpR; Provis | 96.36 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 96.35 | |
| PRK15090 | 257 | DNA-binding transcriptional regulator KdgR; Provis | 96.35 | |
| smart00419 | 48 | HTH_CRP helix_turn_helix, cAMP Regulatory protein. | 96.27 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 96.25 | |
| PF14947 | 77 | HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_ | 96.24 | |
| PRK10857 | 164 | DNA-binding transcriptional regulator IscR; Provis | 96.23 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.23 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.18 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 96.13 | |
| PF13601 | 80 | HTH_34: Winged helix DNA-binding domain; PDB: 1UB9 | 96.1 | |
| PF04703 | 62 | FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A. | 96.1 | |
| PF08220 | 57 | HTH_DeoR: DeoR-like helix-turn-helix domain; Inter | 96.07 | |
| PF08461 | 66 | HTH_12: Ribonuclease R winged-helix domain; InterP | 96.06 | |
| PF09012 | 69 | FeoC: FeoC like transcriptional regulator; InterPr | 96.03 | |
| PRK10141 | 117 | DNA-binding transcriptional repressor ArsR; Provis | 96.0 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 95.9 | |
| COG3355 | 126 | Predicted transcriptional regulator [Transcription | 95.89 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 95.84 | |
| TIGR02337 | 118 | HpaR homoprotocatechuate degradation operon regula | 95.74 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 95.73 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 95.64 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 95.64 | |
| smart00347 | 101 | HTH_MARR helix_turn_helix multiple antibiotic resi | 95.59 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 95.53 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 95.51 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.5 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 95.45 | |
| COG1959 | 150 | Predicted transcriptional regulator [Transcription | 95.44 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 95.4 | |
| PRK03902 | 142 | manganese transport transcriptional regulator; Pro | 95.39 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 95.37 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 95.31 | |
| PF12802 | 62 | MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP | 95.29 | |
| PHA00738 | 108 | putative HTH transcription regulator | 95.26 | |
| TIGR02010 | 135 | IscR iron-sulfur cluster assembly transcription fa | 95.23 | |
| PRK11920 | 153 | rirA iron-responsive transcriptional regulator; Re | 95.21 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 95.17 | |
| PF01047 | 59 | MarR: MarR family; InterPro: IPR000835 The MarR-ty | 95.03 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 94.96 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 94.81 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 94.78 | |
| TIGR00738 | 132 | rrf2_super rrf2 family protein (putative transcrip | 94.77 | |
| TIGR00122 | 69 | birA_repr_reg BirA biotin operon repressor domain. | 94.77 | |
| PRK11512 | 144 | DNA-binding transcriptional repressor MarR; Provis | 94.76 | |
| PF04967 | 53 | HTH_10: HTH DNA binding domain; InterPro: IPR00705 | 94.72 | |
| TIGR02702 | 203 | SufR_cyano iron-sulfur cluster biosynthesis transc | 94.68 | |
| PF08279 | 55 | HTH_11: HTH domain; InterPro: IPR013196 Winged hel | 94.68 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 94.65 | |
| smart00420 | 53 | HTH_DEOR helix_turn_helix, Deoxyribose operon repr | 94.59 | |
| COG1321 | 154 | TroR Mn-dependent transcriptional regulator [Trans | 94.58 | |
| TIGR02944 | 130 | suf_reg_Xantho FeS assembly SUF system regulator, | 94.51 | |
| PF01638 | 90 | HxlR: HxlR-like helix-turn-helix; InterPro: IPR002 | 94.51 | |
| PRK11050 | 152 | manganese transport regulator MntR; Provisional | 94.46 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 94.43 | |
| cd07377 | 66 | WHTH_GntR Winged helix-turn-helix (WHTH) DNA-bindi | 94.4 | |
| COG4742 | 260 | Predicted transcriptional regulator [Transcription | 94.38 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 94.32 | |
| TIGR01884 | 203 | cas_HTH CRISPR locus-related DNA-binding protein. | 94.27 | |
| PRK11014 | 141 | transcriptional repressor NsrR; Provisional | 94.2 | |
| COG2345 | 218 | Predicted transcriptional regulator [Transcription | 94.18 | |
| smart00345 | 60 | HTH_GNTR helix_turn_helix gluconate operon transcr | 94.12 | |
| COG4190 | 144 | Predicted transcriptional regulator [Transcription | 94.12 | |
| PRK06266 | 178 | transcription initiation factor E subunit alpha; V | 94.12 | |
| PF01726 | 65 | LexA_DNA_bind: LexA DNA binding domain; InterPro: | 94.1 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 94.09 | |
| PRK03573 | 144 | transcriptional regulator SlyA; Provisional | 94.03 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 93.93 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 93.8 | |
| COG4189 | 308 | Predicted transcriptional regulator [Transcription | 93.73 | |
| smart00344 | 108 | HTH_ASNC helix_turn_helix ASNC type. AsnC: an auto | 93.35 | |
| PF01325 | 60 | Fe_dep_repress: Iron dependent repressor, N-termin | 93.22 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 93.21 | |
| cd00090 | 78 | HTH_ARSR Arsenical Resistance Operon Repressor and | 93.19 | |
| smart00418 | 66 | HTH_ARSR helix_turn_helix, Arsenical Resistance Op | 92.93 | |
| cd07153 | 116 | Fur_like Ferric uptake regulator(Fur) and related | 92.91 | |
| smart00529 | 96 | HTH_DTXR Helix-turn-helix diphteria tox regulatory | 92.85 | |
| TIGR01889 | 109 | Staph_reg_Sar staphylococcal accessory regulator f | 92.82 | |
| PF07109 | 97 | Mg-por_mtran_C: Magnesium-protoporphyrin IX methyl | 92.81 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 92.74 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 92.73 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 92.67 | |
| TIGR01610 | 95 | phage_O_Nterm phage replication protein O, N-termi | 92.6 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 92.6 | |
| PF07381 | 90 | DUF1495: Winged helix DNA-binding domain (DUF1495) | 92.53 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 92.5 | |
| PF00325 | 32 | Crp: Bacterial regulatory proteins, crp family; In | 92.43 | |
| PF14394 | 171 | DUF4423: Domain of unknown function (DUF4423) | 92.37 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 92.07 | |
| PRK06474 | 178 | hypothetical protein; Provisional | 92.05 | |
| PRK15431 | 78 | ferrous iron transport protein FeoC; Provisional | 91.97 | |
| PRK14165 | 217 | winged helix-turn-helix domain-containing protein/ | 91.96 | |
| PF06163 | 127 | DUF977: Bacterial protein of unknown function (DUF | 91.89 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 91.86 | |
| COG1497 | 260 | Predicted transcriptional regulator [Transcription | 91.69 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 91.67 | |
| COG3432 | 95 | Predicted transcriptional regulator [Transcription | 91.65 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 91.56 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 91.54 | |
| TIGR00373 | 158 | conserved hypothetical protein TIGR00373. This fam | 91.5 | |
| COG2512 | 258 | Predicted membrane-associated trancriptional regul | 91.45 | |
| PHA02943 | 165 | hypothetical protein; Provisional | 91.26 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 90.92 | |
| COG1378 | 247 | Predicted transcriptional regulators [Transcriptio | 90.91 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 90.78 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 90.67 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 90.53 | |
| PF13545 | 76 | HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: | 90.32 | |
| PF03444 | 78 | HrcA_DNA-bdg: Winged helix-turn-helix transcriptio | 90.24 | |
| PRK10870 | 176 | transcriptional repressor MprA; Provisional | 90.09 | |
| COG1733 | 120 | Predicted transcriptional regulators [Transcriptio | 89.92 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 89.87 | |
| PRK13777 | 185 | transcriptional regulator Hpr; Provisional | 89.83 | |
| PF10007 | 92 | DUF2250: Uncharacterized protein conserved in arch | 89.82 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 89.79 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 89.54 | |
| PRK13509 | 251 | transcriptional repressor UlaR; Provisional | 89.29 | |
| PRK11179 | 153 | DNA-binding transcriptional regulator AsnC; Provis | 89.14 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 89.12 | |
| PRK11169 | 164 | leucine-responsive transcriptional regulator; Prov | 89.07 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 88.96 | |
| COG1846 | 126 | MarR Transcriptional regulators [Transcription] | 88.87 | |
| COG4565 | 224 | CitB Response regulator of citrate/malate metaboli | 88.67 | |
| PRK10906 | 252 | DNA-binding transcriptional repressor GlpR; Provis | 88.65 | |
| PF00392 | 64 | GntR: Bacterial regulatory proteins, gntR family; | 88.54 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 88.41 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 88.07 | |
| COG1522 | 154 | Lrp Transcriptional regulators [Transcription] | 88.05 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 87.74 | |
| PF02319 | 71 | E2F_TDP: E2F/DP family winged-helix DNA-binding do | 87.71 | |
| PF07789 | 155 | DUF1627: Protein of unknown function (DUF1627); In | 87.44 | |
| PRK04214 | 412 | rbn ribonuclease BN/unknown domain fusion protein; | 87.39 | |
| TIGR02147 | 271 | Fsuc_second hypothetical protein, TIGR02147. This | 87.22 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 87.13 | |
| PF13730 | 55 | HTH_36: Helix-turn-helix domain | 86.92 | |
| TIGR00498 | 199 | lexA SOS regulatory protein LexA. LexA acts as a h | 86.64 | |
| PF05584 | 72 | Sulfolobus_pRN: Sulfolobus plasmid regulatory prot | 86.63 | |
| PF04182 | 75 | B-block_TFIIIC: B-block binding subunit of TFIIIC; | 86.53 | |
| PRK09802 | 269 | DNA-binding transcriptional regulator AgaR; Provis | 86.51 | |
| PTZ00326 | 494 | phenylalanyl-tRNA synthetase alpha chain; Provisio | 86.37 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 86.32 | |
| PRK10434 | 256 | srlR DNA-bindng transcriptional repressor SrlR; Pr | 86.04 | |
| PF05732 | 165 | RepL: Firmicute plasmid replication protein (RepL) | 85.98 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 85.9 | |
| PRK10411 | 240 | DNA-binding transcriptional activator FucR; Provis | 85.79 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 85.79 | |
| COG1349 | 253 | GlpR Transcriptional regulators of sugar metabolis | 85.1 | |
| PF02002 | 105 | TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024 | 84.8 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 84.55 | |
| PF12793 | 115 | SgrR_N: Sugar transport-related sRNA regulator N-t | 84.3 | |
| PF12324 | 77 | HTH_15: Helix-turn-helix domain of alkylmercury ly | 83.88 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 83.84 | |
| PRK11886 | 319 | bifunctional biotin--[acetyl-CoA-carboxylase] synt | 83.79 | |
| PF01475 | 120 | FUR: Ferric uptake regulator family; InterPro: IPR | 83.59 | |
| PF08784 | 102 | RPA_C: Replication protein A C terminal; InterPro: | 83.58 | |
| PF02295 | 66 | z-alpha: Adenosine deaminase z-alpha domain; Inter | 83.47 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 83.45 | |
| PRK05638 | 442 | threonine synthase; Validated | 83.39 | |
| COG3413 | 215 | Predicted DNA binding protein [General function pr | 83.27 | |
| PRK11639 | 169 | zinc uptake transcriptional repressor; Provisional | 82.67 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 82.47 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 82.38 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 82.35 | |
| PF02796 | 45 | HTH_7: Helix-turn-helix domain of resolvase; Inter | 82.18 | |
| PF13384 | 50 | HTH_23: Homeodomain-like domain; PDB: 2X48_C. | 81.99 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 81.84 | |
| PF13404 | 42 | HTH_AsnC-type: AsnC-type helix-turn-helix domain; | 81.19 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 81.08 | |
| TIGR01321 | 94 | TrpR trp operon repressor, proteobacterial. This m | 81.07 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 81.01 | |
| PF13518 | 52 | HTH_28: Helix-turn-helix domain | 80.96 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 80.59 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 80.35 |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=306.52 Aligned_cols=334 Identities=39% Similarity=0.680 Sum_probs=291.0
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcC--CCCCCcccHHHHHHHhhcCCceeecccC
Q 018775 7 LLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRID--SSCPDIPYLARLMRMLVRKGIFAVHQSS 84 (350)
Q Consensus 7 ~~~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~--~~~~~~~~l~~~L~~L~~~g~l~~~~~~ 84 (350)
..+...+++++++++..+++|++|+|||+||.|.++ ++ ..|+|..+. ..|..+.++.|+||.|++.+++...-..
T Consensus 3 e~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~-~~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~ 79 (342)
T KOG3178|consen 3 ENEASLRAMRLANGFALPMVLKAACELGVFDILANA-GS--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVG 79 (342)
T ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhC-CC--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeec
Confidence 345567899999999999999999999999999975 23 888888776 3444778999999999999999988621
Q ss_pred CCCCCCeEecChhchhhhcCC-CCChHHHHHHhcCchhhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHH
Q 018775 85 DGGDETLYKMTHISKWLLHDS-ELSLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFND 163 (350)
Q Consensus 85 ~~~~~~~~~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 163 (350)
...|.+++.++++..++ ..+++.++.........+.|.++.++++.+..++..++|...++|...+......+++
T Consensus 80 ----~~~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~ 155 (342)
T KOG3178|consen 80 ----GEVYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNG 155 (342)
T ss_pred ----ceeeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHH
Confidence 12799999999666443 4688889888878889999999999999998888889997789999988888899999
Q ss_pred HHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCC-CCeEEEeccCCCCC
Q 018775 164 AMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVC-EGIFHVGGDMFDAI 242 (350)
Q Consensus 164 ~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~~i~~~~~d~~~~~ 242 (350)
+|...+......+++.+. ++++....||||||+|..+..++..||+++++.+|+|.+++.+... ..|+.+.+|++++.
T Consensus 156 sm~~l~~~~~~~il~~~~-Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~ 234 (342)
T KOG3178|consen 156 SMSFLSTLVMKKILEVYT-GFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDT 234 (342)
T ss_pred HHHHHHHHHHHhhhhhhc-ccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccC
Confidence 999888887777777666 4677899999999999999999999999999999999999998875 77999999999999
Q ss_pred CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCC-c-ccccchhhhhhHhhhcCCcccCCHHH
Q 018775 243 PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNN-I-FGDMGLVFDLVMFAHTTGGKERTEQE 320 (350)
Q Consensus 243 p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~s~~e 320 (350)
|..|+||+.|+||||+|++++++|+|+++.|+ |||++++.|.+.++.... . .......+|+.|+..+.+|++|+..|
T Consensus 235 P~~daI~mkWiLhdwtDedcvkiLknC~~sL~-~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e 313 (342)
T KOG3178|consen 235 PKGDAIWMKWILHDWTDEDCVKILKNCKKSLP-PGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKE 313 (342)
T ss_pred CCcCeEEEEeecccCChHHHHHHHHHHHHhCC-CCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHH
Confidence 99999999999999999999999999999999 999999999988863222 1 23345678889998887799999999
Q ss_pred HHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 321 WMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 321 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
++.++.++||.+..+.-.+..+++|+++|
T Consensus 314 ~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 314 FQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred HHhcchhhcCceeEEEeccCccchheeCC
Confidence 99999999999999999999999999886
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=298.70 Aligned_cols=287 Identities=20% Similarity=0.355 Sum_probs=214.0
Q ss_pred HHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 22 ADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 22 ~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
....+|++|+++||||.|.+ +|.|++|||+++|+ +++.+++||++|+++|+|++++ ++|++|+.+..+
T Consensus 2 ~~~~~l~aa~~Lglfd~L~~--gp~t~~eLA~~~~~---~~~~~~~lL~~L~~lgll~~~~-------~~y~~t~~~~~~ 69 (306)
T TIGR02716 2 IEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGS---VPPRLEMLLETLRQMRVINLED-------GKWSLTEFADYM 69 (306)
T ss_pred chHHHHHHHHHcCcHHHHhc--CCCCHHHHHHHcCC---ChHHHHHHHHHHHhCCCeEecC-------CcEecchhHHhh
Confidence 35789999999999999987 79999999999999 8999999999999999999875 899999999844
Q ss_pred hcC-CCC---ChHHHHHHhcCchhhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHHHHh-hhhhhhHHHH
Q 018775 102 LHD-SEL---SLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMA-CTAKIVMKAL 176 (350)
Q Consensus 102 ~~~-~~~---~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~-~~~~~~~~~~ 176 (350)
..+ ++. +..+++.+.. ......|.+|.++++++ ++|...+ .+....+.. ..|...|. .........+
T Consensus 70 l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~r~~-~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~l 141 (306)
T TIGR02716 70 FSPTPKEPNLHQTPVAKAMA-FLADDFYMGLSQAVRGQ-KNFKGQV-----PYPPVTRED-NLYFEEIHRSNAKFAIQLL 141 (306)
T ss_pred ccCCccchhhhcCchHHHHH-HHHHHHHHhHHHHhcCC-ccccccc-----CCCCCCHHH-HHhHHHHHHhcchhHHHHH
Confidence 444 321 1122333221 12345689999999853 3443222 111112222 22333443 3333344567
Q ss_pred HHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCC-CCCCccEE
Q 018775 177 VSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFD-AIPKADAV 248 (350)
Q Consensus 177 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~p~~D~i 248 (350)
++.++ +++..+|||||||+|.+++.+++++|+++++++|+|++++.+++ .+||+++.+|+++ ++|++|+|
T Consensus 142 ~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v 219 (306)
T TIGR02716 142 LEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAV 219 (306)
T ss_pred HHHcC--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEE
Confidence 77777 78889999999999999999999999999999999888877653 5789999999997 67779999
Q ss_pred EecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhH----hhhcCCcccCCHHHHHHH
Q 018775 249 FMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVM----FAHTTGGKERTEQEWMKL 324 (350)
Q Consensus 249 ~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~e~~~l 324 (350)
++++++|+|+++++.++|++++++|+ |||+++|.|.+.++..... .....+..+ .... ...++.++|.++
T Consensus 220 ~~~~~lh~~~~~~~~~il~~~~~~L~-pgG~l~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~e~~~l 293 (306)
T TIGR02716 220 LFCRILYSANEQLSTIMCKKAFDAMR-SGGRLLILDMVIDDPENPN---FDYLSHYILGAGMPFSV--LGFKEQARYKEI 293 (306)
T ss_pred EeEhhhhcCChHHHHHHHHHHHHhcC-CCCEEEEEEeccCCCCCch---hhHHHHHHHHccccccc--ccCCCHHHHHHH
Confidence 99999999999988999999999999 9999999999887654321 111222111 1111 123458999999
Q ss_pred HHhcCCceeEEE
Q 018775 325 LEQGGFHRCKII 336 (350)
Q Consensus 325 l~~aGf~~~~~~ 336 (350)
|+++||+.++++
T Consensus 294 l~~aGf~~v~~~ 305 (306)
T TIGR02716 294 LESLGYKDVTMV 305 (306)
T ss_pred HHHcCCCeeEec
Confidence 999999988764
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=284.15 Aligned_cols=234 Identities=35% Similarity=0.667 Sum_probs=204.0
Q ss_pred CCeEecChhchhhhcCCC-CChHHHHHHhcCchhhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHHHHhh
Q 018775 89 ETLYKMTHISKWLLHDSE-LSLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMAC 167 (350)
Q Consensus 89 ~~~~~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~ 167 (350)
+++|++|+.|+.++.+++ .++..++.+......++.|.+|+++++++.++++..+|.++|+++.++++..+.|..+|..
T Consensus 3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~ 82 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAMAE 82 (241)
T ss_dssp TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHHHh
Confidence 589999999997776654 5677777776677889999999999999999999999999999999999999999999999
Q ss_pred hhhhhH-HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCCCCeEEEeccCCCCCCCcc
Q 018775 168 TAKIVM-KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAIPKAD 246 (350)
Q Consensus 168 ~~~~~~-~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~p~~D 246 (350)
...... ..+...++ +++..+|||||||+|.++..+++++|+++++++|+|++++.+++.+||+++.||+++++|.+|
T Consensus 83 ~~~~~~~~~~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D 160 (241)
T PF00891_consen 83 YSRLNAFDILLEAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVAD 160 (241)
T ss_dssp HHHHHHHHHHHHHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSES
T ss_pred hhhcchhhhhhcccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhcccc
Confidence 888777 77888888 788899999999999999999999999999999999999998889999999999999888899
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCC--ceEEEEeeeecCCCCCcccc-cchhhhhhHhhhcCCcccCCHHHHHH
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKS--GKLVLVEIVVQEDGNNIFGD-MGLVFDLVMFAHTTGGKERTEQEWMK 323 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pg--G~lli~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~e~~~ 323 (350)
+|++.++||+|+++++..+|++++++|+ || |+|+|.|.+.++....+... ....+|+.|+..++ |++||.+||++
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~-pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~-G~~rt~~e~~~ 238 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALK-PGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTG-GKERTEEEWEA 238 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSE-ECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHS-SS-EEHHHHHH
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhC-CCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcC-CCCcCHHHHHH
Confidence 9999999999999999999999999999 99 99999999999987663211 12578999999998 99999999999
Q ss_pred HHH
Q 018775 324 LLE 326 (350)
Q Consensus 324 ll~ 326 (350)
+|+
T Consensus 239 ll~ 241 (241)
T PF00891_consen 239 LLK 241 (241)
T ss_dssp HHH
T ss_pred HhC
Confidence 985
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.2e-19 Score=150.99 Aligned_cols=160 Identities=19% Similarity=0.293 Sum_probs=124.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCCC--ccEEEecch
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIPK--ADAVFMKWI 253 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p~--~D~i~~~~v 253 (350)
..++.+|||||||||..+..+++..+..+++++|+ +.|++.+++ ...|+|+.+|+++ |+|+ ||+|++++.
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg 128 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG 128 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh
Confidence 34789999999999999999999999999999999 999998876 1239999999999 9985 999999999
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh------------------HhhhcCCccc
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV------------------MFAHTTGGKE 315 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~ 315 (350)
|+++++. .+.|++++|+|| |||++++.|...+...... .....+.+. ++.... ...
T Consensus 129 lrnv~d~--~~aL~E~~RVlK-pgG~~~vle~~~p~~~~~~--~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi-~~~ 202 (238)
T COG2226 129 LRNVTDI--DKALKEMYRVLK-PGGRLLVLEFSKPDNPVLR--KAYILYYFKYVLPLIGKLVAKDAEAYEYLAESI-RRF 202 (238)
T ss_pred hhcCCCH--HHHHHHHHHhhc-CCeEEEEEEcCCCCchhhH--HHHHHHHHHhHhhhhceeeecChHHHHHHHHHH-HhC
Confidence 9998876 478999999999 9999999999887664320 001111111 111111 123
Q ss_pred CCHHHHHHHHHhcCCceeEEEEcC-CceeEEEEee
Q 018775 316 RTEQEWMKLLEQGGFHRCKIISMP-ALYSIIEAYP 349 (350)
Q Consensus 316 ~s~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 349 (350)
.+.+++.++++++||..+...... |...+..++|
T Consensus 203 p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K 237 (238)
T COG2226 203 PDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYK 237 (238)
T ss_pred CCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEec
Confidence 478999999999999999976664 4455666655
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-19 Score=159.28 Aligned_cols=159 Identities=19% Similarity=0.170 Sum_probs=120.5
Q ss_pred CCcceEEEecCCchHHHHHHHHH--CCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCCCccEEEecch
Q 018775 185 DSIQSLADVGGGTGGALAEIVKS--YPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIPKADAVFMKWI 253 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p~~D~i~~~~v 253 (350)
.++.+|||||||+|..+..+++. +|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +++.+|+|++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 46789999999999999999987 47899999999 899888764 3479999999998 7778999999999
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhh-----------------hcCCcccC
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFA-----------------HTTGGKER 316 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 316 (350)
+|++++++...++++++++|+ |||.+++.|.+..+..... .....+.... ..+.-...
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lk-pgG~l~i~d~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 206 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLN-PNGVLVLSEKFRFEDTKIN----HLLIDLHHQFKRANGYSELEISQKRTALENVMRTD 206 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcC-CCeEEEEeecccCCCHhHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCC
Confidence 999998888899999999999 9999999998765543220 1111111100 00112345
Q ss_pred CHHHHHHHHHhcCCceeEEEEcCCceeEEEEe
Q 018775 317 TEQEWMKLLEQGGFHRCKIISMPALYSIIEAY 348 (350)
Q Consensus 317 s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 348 (350)
|.+++.++++++||+.+++..-...+.++.++
T Consensus 207 s~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~ 238 (239)
T TIGR00740 207 SIETHKARLKNVGFSHVELWFQCFNFGSLVAV 238 (239)
T ss_pred CHHHHHHHHHHcCCchHHHHHHHHhHhHHhee
Confidence 89999999999999987764443444444443
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.4e-20 Score=158.44 Aligned_cols=158 Identities=22% Similarity=0.348 Sum_probs=82.1
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCCC--ccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIPK--ADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p~--~D~i~~~~ 252 (350)
..++.+|||||||+|..+..++++. |+.+++++|+ +.|++.+++ ..+|+++.+|..+ |+++ ||+|++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 5678899999999999999999874 6789999999 999998875 3589999999999 8874 99999999
Q ss_pred hhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhh-------hcCC------------c
Q 018775 253 ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFA-------HTTG------------G 313 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~------------~ 313 (350)
.||++++.+ +.|++++++|| |||+++|+|...+..... ..++.+.+.. ...+ .
T Consensus 125 glrn~~d~~--~~l~E~~RVLk-PGG~l~ile~~~p~~~~~-----~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~ 196 (233)
T PF01209_consen 125 GLRNFPDRE--RALREMYRVLK-PGGRLVILEFSKPRNPLL-----RALYKFYFKYILPLIGRLLSGDREAYRYLPESIR 196 (233)
T ss_dssp -GGG-SSHH--HHHHHHHHHEE-EEEEEEEEEEEB-SSHHH-----HHHHHH----------------------------
T ss_pred hHHhhCCHH--HHHHHHHHHcC-CCeEEEEeeccCCCCchh-----hceeeeeecccccccccccccccccccccccccc
Confidence 999998754 68999999999 999999999988765311 1111111100 0110 1
Q ss_pred ccCCHHHHHHHHHhcCCceeEEEEcC-CceeEEEEee
Q 018775 314 KERTEQEWMKLLEQGGFHRCKIISMP-ALYSIIEAYP 349 (350)
Q Consensus 314 ~~~s~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 349 (350)
...+.+++.++++++||+.++..++. |...+..+.|
T Consensus 197 ~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 197 RFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp -------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccCC
Confidence 12378999999999999999988874 4555666654
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.2e-18 Score=149.76 Aligned_cols=155 Identities=15% Similarity=0.227 Sum_probs=119.9
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCC--Cc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIP--KA 245 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p--~~ 245 (350)
..+++.+. ..++.+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++ ..+++++.+|+.+ ++| .|
T Consensus 42 ~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 42 TKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 44566666 7788999999999999999998765 679999999 888877664 4679999999987 665 49
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHH
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLL 325 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll 325 (350)
|+|++..+++|++.++...+|++++++|+ |||++++.+......... ...... ...... -...+.+++.++|
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~Lk-PGG~lvi~d~~~~~~~~~----~~~~~~--~~~~~~-~~~~~~~~~~~~l 190 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLK-PNGILLITDYCADKIENW----DEEFKA--YIKKRK-YTLIPIQEYGDLI 190 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcC-CCcEEEEEEeccccccCc----HHHHHH--HHHhcC-CCCCCHHHHHHHH
Confidence 99999999999887677899999999999 999999998866543211 001111 111111 2345889999999
Q ss_pred HhcCCceeEEEEcC
Q 018775 326 EQGGFHRCKIISMP 339 (350)
Q Consensus 326 ~~aGf~~~~~~~~~ 339 (350)
+++||++++...+.
T Consensus 191 ~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 191 KSCNFQNVVAKDIS 204 (263)
T ss_pred HHCCCCeeeEEeCc
Confidence 99999999988764
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.9e-19 Score=155.61 Aligned_cols=151 Identities=19% Similarity=0.185 Sum_probs=113.7
Q ss_pred CCcceEEEecCCchHHHHHHHH--HCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCCCccEEEecch
Q 018775 185 DSIQSLADVGGGTGGALAEIVK--SYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIPKADAVFMKWI 253 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~--~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p~~D~i~~~~v 253 (350)
.++.+|||||||+|..+..+++ .+|+.+++++|. +.+++.+++ ..+++++.+|+.+ +.+++|+|++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 4678999999999999999988 468999999999 999988764 3489999999988 6777999999999
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh------------Hhhhc-CCcccCCHHH
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV------------MFAHT-TGGKERTEQE 320 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~------------~~~~~-~~~~~~s~~e 320 (350)
+|++++++...++++++++|+ |||.+++.|..................++. +.... +.-...+.++
T Consensus 135 l~~l~~~~~~~~l~~i~~~Lk-pGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~ 213 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLN-PGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET 213 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcC-CCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHH
Confidence 999998888899999999999 999999999776554322000000000000 00000 0012238899
Q ss_pred HHHHHHhcCCceeEEE
Q 018775 321 WMKLLEQGGFHRCKII 336 (350)
Q Consensus 321 ~~~ll~~aGf~~~~~~ 336 (350)
..++|+++||+.++++
T Consensus 214 ~~~~L~~aGF~~v~~~ 229 (247)
T PRK15451 214 HKARLHKAGFEHSELW 229 (247)
T ss_pred HHHHHHHcCchhHHHH
Confidence 9999999999977653
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-17 Score=146.25 Aligned_cols=161 Identities=17% Similarity=0.172 Sum_probs=118.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC---------CCCeEEEeccCCC-CCCC--ccEEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV---------CEGIFHVGGDMFD-AIPK--ADAVF 249 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~-~~p~--~D~i~ 249 (350)
..++.+|||||||+|.++..+++.+ |+.+++++|+ ++|++.+++ ..+++++.+|+.+ |+++ ||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 5568899999999999999998875 6679999999 899987753 2479999999988 7763 99999
Q ss_pred ecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh---HhhhcCC-----------ccc
Q 018775 250 MKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV---MFAHTTG-----------GKE 315 (350)
Q Consensus 250 ~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-----------~~~ 315 (350)
+.+++|++++. ..+|++++++|+ |||++++.|...++...... .....+... .....+. ...
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLk-pGG~l~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f 226 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLK-PGSRVSILDFNKSTQPFTTS-MQEWMIDNVVVPVATGYGLAKEYEYLKSSINEY 226 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcC-cCcEEEEEECCCCCcHHHHH-HHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhc
Confidence 99999998865 578999999999 99999999987655321100 000000000 0000010 124
Q ss_pred CCHHHHHHHHHhcCCceeEEEEcCC-ceeEEEEe
Q 018775 316 RTEQEWMKLLEQGGFHRCKIISMPA-LYSIIEAY 348 (350)
Q Consensus 316 ~s~~e~~~ll~~aGf~~~~~~~~~~-~~~vi~~~ 348 (350)
++.+++.++++++||+.++...+.+ ...+..|+
T Consensus 227 ~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 227 LTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 5899999999999999999888754 44555554
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-17 Score=144.85 Aligned_cols=167 Identities=15% Similarity=0.216 Sum_probs=123.6
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC--
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP-- 243 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p-- 243 (350)
.+++.+. ..++.+|||+|||+|..+..+++.. |..+++++|+ +++++.+++ .++++++.+|..+ +++
T Consensus 36 ~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 36 DTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence 3445555 6678899999999999999999885 6789999999 888876653 3579999999987 555
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccc-hhhh----------------hhH
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMG-LVFD----------------LVM 306 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~-~~~~----------------~~~ 306 (350)
.||+|++..++|++++. .++|+++.++|+ |||++++.+...+..... .... ..+. ...
T Consensus 114 ~fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk-~gG~l~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 188 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPDY--MQVLREMYRVVK-PGGKVVCLETSQPTIPGF--KQLYFFYFKYIMPLFGKLFAKSYKEYSW 188 (231)
T ss_pred CccEEEEecccccCCCH--HHHHHHHHHHcC-cCeEEEEEECCCCCChHH--HHHHHHHHcChhHHhhHHhcCCHHHHHH
Confidence 49999999999998765 478999999999 999999988654332110 0000 0000 000
Q ss_pred hhhcCCcccCCHHHHHHHHHhcCCceeEEEEcC-CceeEEEEee
Q 018775 307 FAHTTGGKERTEQEWMKLLEQGGFHRCKIISMP-ALYSIIEAYP 349 (350)
Q Consensus 307 ~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 349 (350)
..... ....+.+++.++|+++||+++++.+.. ++..++.++|
T Consensus 189 ~~~~~-~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 189 LQEST-RDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHH-HHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 00000 123478999999999999999999885 7788888887
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.6e-17 Score=148.11 Aligned_cols=150 Identities=17% Similarity=0.202 Sum_probs=111.4
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC--CccEEEecch
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP--KADAVFMKWI 253 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p--~~D~i~~~~v 253 (350)
.++.+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 567899999999999999999987 679999999 888876653 3579999999988 665 4999999999
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCc--ccc-cchhhhhhHhhhcCCcccCCHHHHHHHHHhcCC
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNI--FGD-MGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGF 330 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf 330 (350)
+||+++. .+++++++++|+ |||+|++.+.......... ... ....++........ ....+.++|.++++++||
T Consensus 196 ~~h~~d~--~~~l~e~~rvLk-pGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~-p~~~s~~~~~~~l~~aGf 271 (340)
T PLN02244 196 GEHMPDK--RKFVQELARVAA-PGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYL-PAWCSTSDYVKLAESLGL 271 (340)
T ss_pred hhccCCH--HHHHHHHHHHcC-CCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccC-CCCCCHHHHHHHHHHCCC
Confidence 9998875 478999999999 9999999887654322110 000 00011111111111 123479999999999999
Q ss_pred ceeEEEEcC
Q 018775 331 HRCKIISMP 339 (350)
Q Consensus 331 ~~~~~~~~~ 339 (350)
.++++....
T Consensus 272 ~~v~~~d~s 280 (340)
T PLN02244 272 QDIKTEDWS 280 (340)
T ss_pred CeeEeeeCc
Confidence 999987653
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=139.78 Aligned_cols=157 Identities=17% Similarity=0.183 Sum_probs=132.6
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIPK 244 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p~ 244 (350)
.+.+++++. ++++.+|||||||.|.+++..++++ +++++++++ +++.+.+++ ..+|++.-.|+.+..+.
T Consensus 61 ~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 61 LDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred HHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence 456778888 9999999999999999999999999 899999999 887776654 56899999999884445
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKL 324 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~l 324 (350)
||-|++..+++|+..+.-..+++++++.|+ |||++++.....+..... ...++.....+++|..++.+++.+.
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~-~~G~~llh~I~~~~~~~~------~~~~~i~~yiFPgG~lPs~~~i~~~ 210 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLK-PGGRMLLHSITGPDQEFR------RFPDFIDKYIFPGGELPSISEILEL 210 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcC-CCceEEEEEecCCCcccc------cchHHHHHhCCCCCcCCCHHHHHHH
Confidence 999999999999999888999999999999 999999988887775431 2234444445777888999999999
Q ss_pred HHhcCCceeEEEEcC
Q 018775 325 LEQGGFHRCKIISMP 339 (350)
Q Consensus 325 l~~aGf~~~~~~~~~ 339 (350)
.+++||.+..+..++
T Consensus 211 ~~~~~~~v~~~~~~~ 225 (283)
T COG2230 211 ASEAGFVVLDVESLR 225 (283)
T ss_pred HHhcCcEEehHhhhc
Confidence 999999998876654
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=134.92 Aligned_cols=153 Identities=21% Similarity=0.300 Sum_probs=115.3
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCC------CcEEEecc-hhHhhhCCC---------CCCeEEEeccC
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPH------IKGINFDL-PHVVATAPV---------CEGIFHVGGDM 238 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~ 238 (350)
-++..+. ...+.++|||+||||.++..+++.-+. .+++++|+ |+++..+++ ..++.++++|.
T Consensus 91 ~~v~~L~--p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA 168 (296)
T KOG1540|consen 91 MFVSKLG--PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA 168 (296)
T ss_pred HhhhccC--CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc
Confidence 3444454 456799999999999999999998766 78999999 999887653 45699999999
Q ss_pred CC-CCCC--ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCC-cccccchhhh-----------
Q 018775 239 FD-AIPK--ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNN-IFGDMGLVFD----------- 303 (350)
Q Consensus 239 ~~-~~p~--~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~-~~~~~~~~~~----------- 303 (350)
++ |+|+ ||.|++.+-+.++++.+ +.|++++|+|| |||++.+.|+..-+...- .+ -....++
T Consensus 169 E~LpFdd~s~D~yTiafGIRN~th~~--k~l~EAYRVLK-pGGrf~cLeFskv~~~~l~~f-y~~ysf~VlpvlG~~iag 244 (296)
T KOG1540|consen 169 EDLPFDDDSFDAYTIAFGIRNVTHIQ--KALREAYRVLK-PGGRFSCLEFSKVENEPLKWF-YDQYSFDVLPVLGEIIAG 244 (296)
T ss_pred ccCCCCCCcceeEEEecceecCCCHH--HHHHHHHHhcC-CCcEEEEEEccccccHHHHHH-HHhhhhhhhchhhHhhhh
Confidence 99 9985 99999999999998864 77999999999 999999999766553211 00 0001111
Q ss_pred ----hhHhhhcCCcccCCHHHHHHHHHhcCCceeE
Q 018775 304 ----LVMFAHTTGGKERTEQEWMKLLEQGGFHRCK 334 (350)
Q Consensus 304 ----~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~ 334 (350)
..++...- .+..+.+++..+.++|||..+.
T Consensus 245 d~~sYqYLveSI-~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 245 DRKSYQYLVESI-RRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hHhhhhhHHhhh-hcCCCHHHHHHHHHHcCCcccc
Confidence 11222111 2344789999999999999887
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=141.13 Aligned_cols=155 Identities=16% Similarity=0.165 Sum_probs=110.9
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-C-CCCccEEEe
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-A-IPKADAVFM 250 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~-~p~~D~i~~ 250 (350)
..+++.++ ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ .+++++.+|+.+ + .+.||+|++
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~ 95 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVS 95 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEE
Confidence 45666676 66789999999999999999999999999999999 899998874 468999999876 2 235999999
Q ss_pred cchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccc-c---chhhhhh--HhhhcCCcccCCHHHHHHH
Q 018775 251 KWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGD-M---GLVFDLV--MFAHTTGGKERTEQEWMKL 324 (350)
Q Consensus 251 ~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~-~---~~~~~~~--~~~~~~~~~~~s~~e~~~l 324 (350)
+.++|++++. ..++++++++|+ |||++++............... . ..+.... +....+ ....+.+++.++
T Consensus 96 ~~~l~~~~d~--~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~ 171 (255)
T PRK14103 96 NAALQWVPEH--ADLLVRWVDELA-PGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVG-AVVQTPAGYAEL 171 (255)
T ss_pred ehhhhhCCCH--HHHHHHHHHhCC-CCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccC-cCCCCHHHHHHH
Confidence 9999998765 578999999999 9999998642211100000000 0 0000000 000011 234589999999
Q ss_pred HHhcCCceeEE
Q 018775 325 LEQGGFHRCKI 335 (350)
Q Consensus 325 l~~aGf~~~~~ 335 (350)
|+++||++...
T Consensus 172 l~~aGf~v~~~ 182 (255)
T PRK14103 172 LTDAGCKVDAW 182 (255)
T ss_pred HHhCCCeEEEE
Confidence 99999985443
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-16 Score=140.77 Aligned_cols=161 Identities=15% Similarity=0.128 Sum_probs=115.2
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIPK 244 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p~ 244 (350)
...+++++. ++++.+|||||||.|.++..+++++ +++++++.+ ++..+.+++ .+++++...|+.+-.+.
T Consensus 51 ~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~ 127 (273)
T PF02353_consen 51 LDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGK 127 (273)
T ss_dssp HHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S
T ss_pred HHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCC
Confidence 456777887 8999999999999999999999998 789999998 777665542 67899999999873337
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKL 324 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~l 324 (350)
||.|++..++.|++.+....+++++.+.|+ |||++++............. .....++.....+++|..++.+++...
T Consensus 128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk-pgG~~~lq~i~~~~~~~~~~--~~~~~~~i~kyiFPgg~lps~~~~~~~ 204 (273)
T PF02353_consen 128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLK-PGGRLVLQTITHRDPPYHAE--RRSSSDFIRKYIFPGGYLPSLSEILRA 204 (273)
T ss_dssp -SEEEEESEGGGTCGGGHHHHHHHHHHHSE-TTEEEEEEEEEE--HHHHHC--TTCCCHHHHHHTSTTS---BHHHHHHH
T ss_pred CCEEEEEechhhcChhHHHHHHHHHHHhcC-CCcEEEEEecccccccchhh--cCCCceEEEEeeCCCCCCCCHHHHHHH
Confidence 999999999999998888899999999999 99999998777765432110 000113333344666788899999999
Q ss_pred HHhcCCceeEEEEcC
Q 018775 325 LEQGGFHRCKIISMP 339 (350)
Q Consensus 325 l~~aGf~~~~~~~~~ 339 (350)
++++||++..+..++
T Consensus 205 ~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 205 AEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHTT-EEEEEEE-H
T ss_pred HhcCCEEEEEEEEcC
Confidence 999999999887664
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-16 Score=141.31 Aligned_cols=141 Identities=25% Similarity=0.283 Sum_probs=110.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---CCCeEEEeccCCC-CCC--CccEEEecchhccC
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---CEGIFHVGGDMFD-AIP--KADAVFMKWILHDW 257 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~ 257 (350)
.++.+|||||||+|.++..+++.++..+++++|. +++++.+++ ..+++++.+|+.+ +++ .||+|++..++|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 4578999999999999999999888889999999 888887765 3578999999987 655 39999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEE
Q 018775 258 DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 258 ~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~ 337 (350)
++.+ .+|++++++|+ |||++++.+...+.... .....+.. ....+.+++.++|+++||+.+++..
T Consensus 192 ~d~~--~~L~e~~rvLk-PGG~LvIi~~~~p~~~~-----~r~~~~~~-------~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 192 PDPQ--RGIKEAYRVLK-IGGKACLIGPVHPTFWL-----SRFFADVW-------MLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred CCHH--HHHHHHHHhcC-CCcEEEEEEecCcchhH-----HHHhhhhh-------ccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 8764 68999999999 99999988765432110 00001111 1124689999999999999999987
Q ss_pred cCC
Q 018775 338 MPA 340 (350)
Q Consensus 338 ~~~ 340 (350)
++.
T Consensus 257 i~~ 259 (340)
T PLN02490 257 IGP 259 (340)
T ss_pred cCh
Confidence 643
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-15 Score=133.73 Aligned_cols=164 Identities=18% Similarity=0.277 Sum_probs=122.4
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC--
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP-- 243 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p-- 243 (350)
++..+. ..++.+|||||||+|.++..+++.+| +.+++++|. +.+++.+++ ..+++++.+|+.+ +.+
T Consensus 43 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 43 TIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence 444444 44678999999999999999999987 789999999 777776654 3568999999987 443
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh---Hh----hhcCC----
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV---MF----AHTTG---- 312 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~---- 312 (350)
.||+|++.+++|++++. ..+|++++++|+ |||++++.+...+..... ....+.. ++ ....+
T Consensus 121 ~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~-~gG~li~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (239)
T PRK00216 121 SFDAVTIAFGLRNVPDI--DKALREMYRVLK-PGGRLVILEFSKPTNPPL-----KKAYDFYLFKVLPLIGKLISKNAEA 192 (239)
T ss_pred CccEEEEecccccCCCH--HHHHHHHHHhcc-CCcEEEEEEecCCCchHH-----HHHHHHHHHhhhHHHHHHHcCCcHH
Confidence 49999999999998764 578999999999 999999998766543210 0000100 00 00000
Q ss_pred --------cccCCHHHHHHHHHhcCCceeEEEEcC-CceeEEEEee
Q 018775 313 --------GKERTEQEWMKLLEQGGFHRCKIISMP-ALYSIIEAYP 349 (350)
Q Consensus 313 --------~~~~s~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 349 (350)
...++.++|.++|+++||+.+++.... +...++.|+|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 193 YSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 123478999999999999999999874 6788999987
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.8e-16 Score=139.98 Aligned_cols=152 Identities=17% Similarity=0.173 Sum_probs=109.0
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC-------CCCCeEEEeccCCC-CCC-Cc
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP-------VCEGIFHVGGDMFD-AIP-KA 245 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~i~~~~~d~~~-~~p-~~ 245 (350)
+...++ ...+.+|||||||+|.++..++...+. .++++|. +.++..++ ...++.++.+|+.+ +.+ .|
T Consensus 114 l~~~l~--~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 114 VLPHLS--PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHhhC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 344444 335689999999999999999998765 5999998 55554321 14579999999987 654 49
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHH
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLL 325 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll 325 (350)
|+|++..++||..+. ..+|++++++|+ |||.+++.....+.......... + .+....+.-..++.+++.++|
T Consensus 191 D~V~s~~vl~H~~dp--~~~L~~l~~~Lk-pGG~lvl~~~~i~~~~~~~l~p~----~-~y~~~~~~~~lps~~~l~~~L 262 (322)
T PRK15068 191 DTVFSMGVLYHRRSP--LDHLKQLKDQLV-PGGELVLETLVIDGDENTVLVPG----D-RYAKMRNVYFIPSVPALKNWL 262 (322)
T ss_pred CEEEECChhhccCCH--HHHHHHHHHhcC-CCcEEEEEEEEecCCCccccCch----h-HHhcCccceeCCCHHHHHHHH
Confidence 999999999997765 478999999999 99999887666554432110000 0 010111101345899999999
Q ss_pred HhcCCceeEEEEc
Q 018775 326 EQGGFHRCKIISM 338 (350)
Q Consensus 326 ~~aGf~~~~~~~~ 338 (350)
+++||+.+++...
T Consensus 263 ~~aGF~~i~~~~~ 275 (322)
T PRK15068 263 ERAGFKDVRIVDV 275 (322)
T ss_pred HHcCCceEEEEeC
Confidence 9999999998765
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.3e-16 Score=138.62 Aligned_cols=153 Identities=17% Similarity=0.133 Sum_probs=109.2
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC-------CCCCeEEEeccCCC-CC-CC
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP-------VCEGIFHVGGDMFD-AI-PK 244 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~i~~~~~d~~~-~~-p~ 244 (350)
.++..+. ..++.+|||||||+|.++..++...+. .++++|. +.++..++ ...++.+..+++.+ +. ..
T Consensus 112 ~~l~~l~--~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~ 188 (314)
T TIGR00452 112 RVLPHLS--PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYA 188 (314)
T ss_pred HHHHhcC--CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCC
Confidence 3444554 455789999999999999999987664 7899998 66654321 24678888888877 43 35
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKL 324 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~l 324 (350)
||+|++..+|||+++. ..+|++++++|+ |||.|++.+...+............ ...+. +--..++.+++.++
T Consensus 189 FD~V~s~gvL~H~~dp--~~~L~el~r~Lk-pGG~Lvletl~i~g~~~~~l~p~~r--y~k~~---nv~flpS~~~L~~~ 260 (314)
T TIGR00452 189 FDTVFSMGVLYHRKSP--LEHLKQLKHQLV-IKGELVLETLVIDGDLNTVLVPKDR--YAKMK---NVYFIPSVSALKNW 260 (314)
T ss_pred cCEEEEcchhhccCCH--HHHHHHHHHhcC-CCCEEEEEEEEecCccccccCchHH--HHhcc---ccccCCCHHHHHHH
Confidence 9999999999998765 478999999999 9999999877665432210000000 00011 10134589999999
Q ss_pred HHhcCCceeEEEEc
Q 018775 325 LEQGGFHRCKIISM 338 (350)
Q Consensus 325 l~~aGf~~~~~~~~ 338 (350)
|+++||+.+++...
T Consensus 261 L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 261 LEKVGFENFRILDV 274 (314)
T ss_pred HHHCCCeEEEEEec
Confidence 99999999998754
|
Known examples to date are restricted to the proteobacteria. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-15 Score=147.79 Aligned_cols=152 Identities=14% Similarity=0.217 Sum_probs=118.0
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC--C
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP--K 244 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p--~ 244 (350)
..+++.+. ..++.+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++ ..+++++.+|+.+ ++| .
T Consensus 256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence 45666666 5678899999999999999998876 779999999 888887653 4579999999988 555 3
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKL 324 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~l 324 (350)
||+|++..+++|+++. ..++++++++|+ |||++++.+.......... ..... . ...+ ...++.+++.++
T Consensus 333 fD~I~s~~~l~h~~d~--~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~~~-----~~~~~-~-~~~g-~~~~~~~~~~~~ 401 (475)
T PLN02336 333 FDVIYSRDTILHIQDK--PALFRSFFKWLK-PGGKVLISDYCRSPGTPSP-----EFAEY-I-KQRG-YDLHDVQAYGQM 401 (475)
T ss_pred EEEEEECCcccccCCH--HHHHHHHHHHcC-CCeEEEEEEeccCCCCCcH-----HHHHH-H-HhcC-CCCCCHHHHHHH
Confidence 9999999999998875 478999999999 9999999987765432211 11111 1 1122 456789999999
Q ss_pred HHhcCCceeEEEEcC
Q 018775 325 LEQGGFHRCKIISMP 339 (350)
Q Consensus 325 l~~aGf~~~~~~~~~ 339 (350)
++++||.++.+...+
T Consensus 402 l~~aGF~~i~~~d~~ 416 (475)
T PLN02336 402 LKDAGFDDVIAEDRT 416 (475)
T ss_pred HHHCCCeeeeeecch
Confidence 999999999776543
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-15 Score=133.25 Aligned_cols=136 Identities=21% Similarity=0.320 Sum_probs=108.0
Q ss_pred ceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC-CccEEEecchhccC
Q 018775 188 QSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP-KADAVFMKWILHDW 257 (350)
Q Consensus 188 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh~~ 257 (350)
.+|||||||+|..+..+++.+|+.+++++|+ +++++.+++ .++++++.+|+.+ +.+ .||+|++..++||+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999999999999999 777776653 4689999999976 554 49999999999998
Q ss_pred ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEE
Q 018775 258 DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 258 ~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~ 337 (350)
++. ..++++++++|+ |||++++.+...+...... . .... ....+.++|.++++++||++++...
T Consensus 81 ~~~--~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~-----~-------~~~~-~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 81 KDK--MDLFSNISRHLK-DGGHLVLADFIANLLSAIE-----H-------EETT-SYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CCH--HHHHHHHHHHcC-CCCEEEEEEcccccCcccc-----c-------cccc-cccCCHHHHHHHHHHCCCeEEEeEE
Confidence 764 589999999999 9999999887543211100 0 0011 2245789999999999999999877
Q ss_pred cC
Q 018775 338 MP 339 (350)
Q Consensus 338 ~~ 339 (350)
+.
T Consensus 145 ~~ 146 (224)
T smart00828 145 AS 146 (224)
T ss_pred Cc
Confidence 64
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=131.17 Aligned_cols=164 Identities=20% Similarity=0.211 Sum_probs=120.8
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCC--Ccc
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIP--KAD 246 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p--~~D 246 (350)
+++.+. ..++.+|||+|||+|.++..+++.+|. .+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .||
T Consensus 31 ~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 31 AVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD 108 (223)
T ss_pred HHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence 344444 446889999999999999999999886 78999999 777776653 3578999999988 544 499
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhh---cC-----C------
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAH---TT-----G------ 312 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~------ 312 (350)
+|+++.++|+.++ ...+++++++.|+ |||++++.+...+.... .....+..+... .+ .
T Consensus 109 ~i~~~~~~~~~~~--~~~~l~~~~~~L~-~gG~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (223)
T TIGR01934 109 AVTIAFGLRNVTD--IQKALREMYRVLK-PGGRLVILEFSKPANAL-----LKKFYKFYLKNVLPSIGGLISKNAEAYTY 180 (223)
T ss_pred EEEEeeeeCCccc--HHHHHHHHHHHcC-CCcEEEEEEecCCCchh-----hHHHHHHHHHHhhhhhhhhhcCCchhhHH
Confidence 9999999998765 4578999999999 99999998876543321 111111111100 00 0
Q ss_pred -----cccCCHHHHHHHHHhcCCceeEEEEcCCc-eeEEEEee
Q 018775 313 -----GKERTEQEWMKLLEQGGFHRCKIISMPAL-YSIIEAYP 349 (350)
Q Consensus 313 -----~~~~s~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~~ 349 (350)
....+.++|.++|+++||+.+++.+..+. ..+++++|
T Consensus 181 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 181 LPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 11237889999999999999999998654 56777765
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-15 Score=127.99 Aligned_cols=140 Identities=14% Similarity=0.142 Sum_probs=107.2
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC-C
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP-K 244 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p-~ 244 (350)
..+++.++ ..++.+|||+|||+|..+..|+++ +.+++++|+ +.+++.+++ ..++++...|+.+ +++ .
T Consensus 20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 95 (197)
T PRK11207 20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGE 95 (197)
T ss_pred HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCC
Confidence 34555555 455689999999999999999986 568999999 888887664 2458888899887 444 4
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKL 324 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~l 324 (350)
||+|++..++|++++++...++++++++|+ |||++++++....+....+ ... ....+.+|+.++
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lk-pgG~~~~~~~~~~~~~~~~--------------~~~-~~~~~~~el~~~ 159 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTK-PGGYNLIVAAMDTADYPCT--------------VGF-PFAFKEGELRRY 159 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcC-CCcEEEEEEEecCCCCCCC--------------CCC-CCccCHHHHHHH
Confidence 999999999999998888999999999999 9999887765544322100 001 123468899999
Q ss_pred HHhcCCceeEE
Q 018775 325 LEQGGFHRCKI 335 (350)
Q Consensus 325 l~~aGf~~~~~ 335 (350)
++ ||+++..
T Consensus 160 ~~--~~~~~~~ 168 (197)
T PRK11207 160 YE--GWEMVKY 168 (197)
T ss_pred hC--CCeEEEe
Confidence 87 8988776
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-15 Score=134.45 Aligned_cols=145 Identities=17% Similarity=0.306 Sum_probs=112.0
Q ss_pred CCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC--CccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP--KADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p--~~D~i~~~~ 252 (350)
..++.+|||||||+|..+..+++. .++.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 567889999999999988877776 46678999999 888888764 3589999999987 655 499999999
Q ss_pred hhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCce
Q 018775 253 ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHR 332 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~ 332 (350)
++|++++. ..++++++++|+ |||++++.+........ .....+..+...+. +...+.++|.++|+++||..
T Consensus 155 v~~~~~d~--~~~l~~~~r~Lk-pGG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLK-PGGRFAISDVVLRGELP-----EEIRNDAELYAGCV-AGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcC-CCcEEEEEEeeccCCCC-----HHHHHhHHHHhccc-cCCCCHHHHHHHHHHCCCCc
Confidence 99987765 478999999999 99999999887644221 11122223332223 45568899999999999999
Q ss_pred eEEEE
Q 018775 333 CKIIS 337 (350)
Q Consensus 333 ~~~~~ 337 (350)
+++..
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 87744
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.7e-16 Score=120.08 Aligned_cols=98 Identities=24% Similarity=0.385 Sum_probs=83.9
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccC-CC-CC-CCccEEEecc-h
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDM-FD-AI-PKADAVFMKW-I 253 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~-~~-~~-p~~D~i~~~~-v 253 (350)
++.+|||||||+|.++..+++.+|+.+++++|. |.+++.+++ .++|+++++|+ .. +. ++||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 467999999999999999999999999999999 888887654 68999999999 33 33 3599999999 6
Q ss_pred hccCCh-HHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 254 LHDWDD-EACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 254 lh~~~~-~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+|++.. ++..++|+++++.|+ |||+++|.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~-pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLK-PGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcC-CCcEEEEEE
Confidence 665443 577899999999999 999999865
|
... |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.6e-16 Score=139.50 Aligned_cols=145 Identities=16% Similarity=0.079 Sum_probs=105.6
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC--CccEEEecchh
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP--KADAVFMKWIL 254 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p--~~D~i~~~~vl 254 (350)
++.+|||||||+|.++..+++ ++.+++++|. +.+++.++. ..+|+++.+|+.+ +.+ .||+|++..+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 567999999999999998886 3678999999 888887763 2479999999877 543 49999999999
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCC----cccCCHHHHHHHHHhcCC
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTG----GKERTEQEWMKLLEQGGF 330 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~s~~e~~~ll~~aGf 330 (350)
||+++.. .+|++++++|+ |||.+++........... ...............+ .+.++.+++.++|+++||
T Consensus 209 eHv~d~~--~~L~~l~r~Lk-PGG~liist~nr~~~~~~---~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf 282 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTI-PNGATVLSTINRTMRAYA---STIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASV 282 (322)
T ss_pred HhcCCHH--HHHHHHHHHcC-CCcEEEEEECCcCHHHHH---HhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCC
Confidence 9998764 78999999999 999999987543211000 0000000011111110 235689999999999999
Q ss_pred ceeEEEEc
Q 018775 331 HRCKIISM 338 (350)
Q Consensus 331 ~~~~~~~~ 338 (350)
+++++.-+
T Consensus 283 ~i~~~~G~ 290 (322)
T PLN02396 283 DVKEMAGF 290 (322)
T ss_pred eEEEEeee
Confidence 99887443
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-14 Score=127.09 Aligned_cols=156 Identities=17% Similarity=0.210 Sum_probs=111.1
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC--Cc
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP--KA 245 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p--~~ 245 (350)
+.+.+. ..++.+|||+|||+|.++..+++.+ |..+++++|. +.+++.+++ ..+++++..|+.. +++ .|
T Consensus 11 ~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 11 TFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 344455 6778999999999999999999987 7889999999 777766643 4679999999887 544 49
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHH
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLL 325 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll 325 (350)
|+|++.++++++++. ..++++++++|+ |||.+++.+........... .......+............+..+|.+++
T Consensus 89 D~v~~~~~~~~~~~~--~~~l~~~~~~L~-~gG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 164 (241)
T PRK08317 89 DAVRSDRVLQHLEDP--ARALAEIARVLR-PGGRVVVLDTDWDTLVWHSG-DRALMRKILNFWSDHFADPWLGRRLPGLF 164 (241)
T ss_pred eEEEEechhhccCCH--HHHHHHHHHHhc-CCcEEEEEecCCCceeecCC-ChHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 999999999998875 578999999999 99999998854322111100 00011111111111102334567899999
Q ss_pred HhcCCceeEEEE
Q 018775 326 EQGGFHRCKIIS 337 (350)
Q Consensus 326 ~~aGf~~~~~~~ 337 (350)
+++||..+++..
T Consensus 165 ~~aGf~~~~~~~ 176 (241)
T PRK08317 165 REAGLTDIEVEP 176 (241)
T ss_pred HHcCCCceeEEE
Confidence 999999887644
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-15 Score=124.48 Aligned_cols=136 Identities=19% Similarity=0.204 Sum_probs=97.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC---CCCCccEEEecchhccCCh
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD---AIPKADAVFMKWILHDWDD 259 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~p~~D~i~~~~vlh~~~~ 259 (350)
..+..+|||||||.|.++..+.+... +++++|+ +.+++. ..+.....+... +...||+|++..+|||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 45789999999999999999976633 9999999 788877 223333332223 2235999999999999986
Q ss_pred HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhh-cCCcccCCHHHHHHHHHhcCCceeE
Q 018775 260 EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAH-TTGGKERTEQEWMKLLEQGGFHRCK 334 (350)
Q Consensus 260 ~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~e~~~ll~~aGf~~~~ 334 (350)
...+|++++++|+ |||.+++.+........ .......+... ..+...++.++|.++++++||++++
T Consensus 94 --~~~~l~~l~~~Lk-pgG~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 --PEEFLKELSRLLK-PGGYLVISDPNRDDPSP------RSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp --HHHHHHHHHHCEE-EEEEEEEEEEBTTSHHH------HHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred --HHHHHHHHHHhcC-CCCEEEEEEcCCcchhh------hHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 4689999999999 99999998877643110 00111111110 0224567999999999999999875
|
... |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5e-15 Score=131.36 Aligned_cols=159 Identities=14% Similarity=0.159 Sum_probs=109.7
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--CCC-
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--AIP- 243 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~~p- 243 (350)
.+++.++ .++.+|||||||+|.++..+++. +.+++++|+ +++++.+++ .++++++.+|+.+ +.+
T Consensus 36 ~~l~~l~---~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~ 110 (255)
T PRK11036 36 RLLAELP---PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE 110 (255)
T ss_pred HHHHhcC---CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC
Confidence 3444444 45679999999999999999986 468999999 899888764 3578999999876 233
Q ss_pred -CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcc--cccchh-hhhh---HhhhcCCcccC
Q 018775 244 -KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIF--GDMGLV-FDLV---MFAHTTGGKER 316 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~--~~~~~~-~~~~---~~~~~~~~~~~ 316 (350)
.||+|++..++|+++++ ..+|++++++|+ |||++++............. ...... ..+. .....+ ....
T Consensus 111 ~~fD~V~~~~vl~~~~~~--~~~l~~~~~~Lk-pgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~ 186 (255)
T PRK11036 111 TPVDLILFHAVLEWVADP--KSVLQTLWSVLR-PGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSP-DYPL 186 (255)
T ss_pred CCCCEEEehhHHHhhCCH--HHHHHHHHHHcC-CCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCC-CCCC
Confidence 49999999999998776 478999999999 99999987544321100000 000000 0000 000011 2335
Q ss_pred CHHHHHHHHHhcCCceeEEEEcCCce
Q 018775 317 TEQEWMKLLEQGGFHRCKIISMPALY 342 (350)
Q Consensus 317 s~~e~~~ll~~aGf~~~~~~~~~~~~ 342 (350)
+.+++.++|+++||+++.+.-+..+.
T Consensus 187 ~~~~l~~~l~~aGf~~~~~~gi~~~~ 212 (255)
T PRK11036 187 DPEQVYQWLEEAGWQIMGKTGVRVFH 212 (255)
T ss_pred CHHHHHHHHHHCCCeEeeeeeEEEEe
Confidence 78999999999999998766554433
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.4e-15 Score=141.80 Aligned_cols=143 Identities=17% Similarity=0.271 Sum_probs=108.8
Q ss_pred CChhhhhccCcchHHHHHHHHhhhhhhh--HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhH
Q 018775 145 CEIWDFASQSPQFNNLFNDAMACTAKIV--MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHV 221 (350)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~--~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~ 221 (350)
..+|+++...++..++|...|....... .......++ +.++.+|||||||+|.++..+++.+|+.+++++|+ +.+
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~M 454 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENV 454 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHH
Confidence 3567888777777777766554432221 111122334 44678999999999999999999999999999999 888
Q ss_pred hhhCCC-----CCCeEEEeccCCC-C--CC--CccEEEecchhccC-----------ChHHHHHHHHHHHhhCCCCCceE
Q 018775 222 VATAPV-----CEGIFHVGGDMFD-A--IP--KADAVFMKWILHDW-----------DDEACVKILKNCRQAIPDKSGKL 280 (350)
Q Consensus 222 ~~~a~~-----~~~i~~~~~d~~~-~--~p--~~D~i~~~~vlh~~-----------~~~~~~~~L~~~~~~L~~pgG~l 280 (350)
++.+++ ..++.++.+|..+ + ++ +||+|+++.++|+| ++++..++|++++++|+ |||++
T Consensus 455 Le~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLK-PGGrL 533 (677)
T PRK06922 455 IDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLK-PGGRI 533 (677)
T ss_pred HHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcC-CCcEE
Confidence 887764 3467889999876 4 43 39999999999976 24677899999999999 99999
Q ss_pred EEEeeeecCC
Q 018775 281 VLVEIVVQED 290 (350)
Q Consensus 281 li~e~~~~~~ 290 (350)
++.|...++.
T Consensus 534 II~D~v~~E~ 543 (677)
T PRK06922 534 IIRDGIMTED 543 (677)
T ss_pred EEEeCccCCc
Confidence 9999766543
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.4e-16 Score=125.48 Aligned_cols=137 Identities=25% Similarity=0.414 Sum_probs=101.2
Q ss_pred CCcceEEEecCCchHHHHHHH-HHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C--CC-CccEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIV-KSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A--IP-KADAVFMKW 252 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~p-~~D~i~~~~ 252 (350)
++..+|||+|||+|.++..++ +.+|+.+++++|+ +++++.++. .++++|..+|+.+ + ++ .||+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 457899999999999999999 4578999999999 999988875 4589999999999 5 43 699999999
Q ss_pred hhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhH--hhhcCCcccCCHHHHHHHHHhcC
Q 018775 253 ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVM--FAHTTGGKERTEQEWMKLLEQGG 329 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~e~~~ll~~aG 329 (350)
++|++++.. .++++++++|+ |+|.+++.+.......... ......+.+ ......+. ..++|..+|++||
T Consensus 82 ~l~~~~~~~--~~l~~~~~~lk-~~G~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 82 VLHHFPDPE--KVLKNIIRLLK-PGGILIISDPNHNDELPEQ---LEELMNLYSEVWSMIYIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp TGGGTSHHH--HHHHHHHHHEE-EEEEEEEEEEEHSHHHHHH---HHHHHHHHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred chhhccCHH--HHHHHHHHHcC-CCcEEEEEECChHHHHHHH---HHHHHHHHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence 999988764 78999999999 9999999888732211100 000111111 11011012 6789999999998
|
... |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=125.52 Aligned_cols=178 Identities=12% Similarity=0.052 Sum_probs=117.5
Q ss_pred hhhhccCcchHHHHHHHHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC
Q 018775 148 WDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP 226 (350)
Q Consensus 148 ~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 226 (350)
|+.++..+.....+...+..........+++.+.....+..+|||||||+|.++..+++. +.+++++|+ +++++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~ 94 (219)
T TIGR02021 17 WARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMAR 94 (219)
T ss_pred HHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 444444333333344434332333333444443311345789999999999999999875 458999999 88988776
Q ss_pred C-------CCCeEEEeccCCCCCCCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccc
Q 018775 227 V-------CEGIFHVGGDMFDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMG 299 (350)
Q Consensus 227 ~-------~~~i~~~~~d~~~~~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~ 299 (350)
+ ..++++..+|+.+....||+|++..+++|++.++...+++++++.++ +++.+.+. +... ..
T Consensus 95 ~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~-~~~~i~~~----~~~~------~~ 163 (219)
T TIGR02021 95 NRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTK-ERVIFTFA----PKTA------WL 163 (219)
T ss_pred HHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhC-CCEEEEEC----CCch------HH
Confidence 4 24799999999873366999999999999988888899999999988 76544431 1110 00
Q ss_pred hhhhhhHhhhcC------CcccCCHHHHHHHHHhcCCceeEEEEcC
Q 018775 300 LVFDLVMFAHTT------GGKERTEQEWMKLLEQGGFHRCKIISMP 339 (350)
Q Consensus 300 ~~~~~~~~~~~~------~~~~~s~~e~~~ll~~aGf~~~~~~~~~ 339 (350)
..... +....+ .-..++.+++.++++++||+++.+....
T Consensus 164 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 164 AFLKM-IGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVS 208 (219)
T ss_pred HHHHH-HHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeeccc
Confidence 01111 111111 0123488999999999999999987664
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-14 Score=120.85 Aligned_cols=140 Identities=15% Similarity=0.071 Sum_probs=104.1
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC-Ccc
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP-KAD 246 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p-~~D 246 (350)
.+++.+. ..++.+|||+|||+|..+..++++ +.+++++|+ +.+++.+++ .-.+.+...|+.. +.+ .||
T Consensus 21 ~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 96 (195)
T TIGR00477 21 AVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYD 96 (195)
T ss_pred HHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCC
Confidence 4445555 445679999999999999999985 568999999 888886653 2246777788765 443 499
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHH
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLE 326 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~ 326 (350)
+|+++.++|++++++...++++++++|+ |||++++++....+..... . .. ....+.+++.++|+
T Consensus 97 ~I~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lli~~~~~~~~~~~~-----~---------~~-~~~~~~~el~~~f~ 160 (195)
T TIGR00477 97 FIFSTVVFMFLQAGRVPEIIANMQAHTR-PGGYNLIVAAMDTADYPCH-----M---------PF-SFTFKEDELRQYYA 160 (195)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhC-CCcEEEEEEecccCCCCCC-----C---------Cc-CccCCHHHHHHHhC
Confidence 9999999999988888899999999999 9999888776543321100 0 00 22457899999886
Q ss_pred hcCCceeEEE
Q 018775 327 QGGFHRCKII 336 (350)
Q Consensus 327 ~aGf~~~~~~ 336 (350)
+|+++...
T Consensus 161 --~~~~~~~~ 168 (195)
T TIGR00477 161 --DWELLKYN 168 (195)
T ss_pred --CCeEEEee
Confidence 48877765
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.3e-14 Score=125.15 Aligned_cols=106 Identities=18% Similarity=0.288 Sum_probs=91.4
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CC-CCccEE
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AI-PKADAV 248 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~-p~~D~i 248 (350)
...++..++ ..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ .. +.||+|
T Consensus 20 ~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v 97 (258)
T PRK01683 20 ARDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI 97 (258)
T ss_pred HHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence 456677776 67789999999999999999999999999999999 899988876 4678999999877 22 359999
Q ss_pred EecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 249 FMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 249 ~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
+++.++|++++. ..++++++++|+ |||.+++.
T Consensus 98 ~~~~~l~~~~d~--~~~l~~~~~~Lk-pgG~~~~~ 129 (258)
T PRK01683 98 FANASLQWLPDH--LELFPRLVSLLA-PGGVLAVQ 129 (258)
T ss_pred EEccChhhCCCH--HHHHHHHHHhcC-CCcEEEEE
Confidence 999999988765 478999999999 99999885
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.8e-15 Score=110.12 Aligned_cols=88 Identities=28% Similarity=0.411 Sum_probs=76.6
Q ss_pred EEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---CCCeEEEeccCCC-CCCC--ccEEEecchhccCChHHHH
Q 018775 191 ADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---CEGIFHVGGDMFD-AIPK--ADAVFMKWILHDWDDEACV 263 (350)
Q Consensus 191 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~p~--~D~i~~~~vlh~~~~~~~~ 263 (350)
||||||+|..+..++++ +..+++++|. +.+++.+++ ..+++++.+|+.+ ++++ ||+|++.+++||+ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence 89999999999999998 8899999999 888887765 5667799999998 7764 9999999999998 4457
Q ss_pred HHHHHHHhhCCCCCceEEE
Q 018775 264 KILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 264 ~~L~~~~~~L~~pgG~lli 282 (350)
+++++++++|| |||+++|
T Consensus 78 ~~l~e~~rvLk-~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLK-PGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEE-EEEEEEE
T ss_pred HHHHHHHHHcC-cCeEEeC
Confidence 89999999999 9999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.6e-14 Score=117.12 Aligned_cols=158 Identities=16% Similarity=0.122 Sum_probs=120.6
Q ss_pred eEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhh-------hCCCCCCeEEEeccCCCC---CC--------CccEEE
Q 018775 189 SLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVA-------TAPVCEGIFHVGGDMFDA---IP--------KADAVF 249 (350)
Q Consensus 189 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-------~a~~~~~i~~~~~d~~~~---~p--------~~D~i~ 249 (350)
+|||||||||..+..+++++|+++..-.|. ++... .+...+-..-+..|+.++ .+ .||+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 699999999999999999999998877776 33321 111111112234555552 11 499999
Q ss_pred ecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcC
Q 018775 250 MKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGG 329 (350)
Q Consensus 250 ~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aG 329 (350)
+.+++|..+.+.+..+++.+.++|+ |||.|+++-+...++...+ .....||-.+....+....|..+++.++.+++|
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~-~gG~L~~YGPF~~~G~~ts--~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLK-PGGLLFLYGPFNRDGKFTS--ESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCC-CCCEEEEeCCcccCCEeCC--cHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 9999999999999999999999999 9999999998877654321 123456666655554456789999999999999
Q ss_pred CceeEEEEcCCceeEEEEee
Q 018775 330 FHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 330 f~~~~~~~~~~~~~vi~~~~ 349 (350)
++.++++.||....+++.+|
T Consensus 185 L~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CccCcccccCCCCeEEEEeC
Confidence 99999999999888777765
|
The function of this family is unknown. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.5e-14 Score=122.11 Aligned_cols=144 Identities=19% Similarity=0.191 Sum_probs=102.2
Q ss_pred CCcceEEEecCCchHHHHHHHHH----CCCCcEEEecc-hhHhhhCCC---CCCeEEEeccCCC-CCC--CccEEEecch
Q 018775 185 DSIQSLADVGGGTGGALAEIVKS----YPHIKGINFDL-PHVVATAPV---CEGIFHVGGDMFD-AIP--KADAVFMKWI 253 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~p--~~D~i~~~~v 253 (350)
.++.+|||||||+|.++..|++. .++.+++++|+ +++++.+++ ..++++...+... +.+ .||+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 56789999999999999888753 46679999999 999988875 2456666665443 322 4999999999
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhc------CC-----cccCCHHHHH
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHT------TG-----GKERTEQEWM 322 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-----~~~~s~~e~~ 322 (350)
|||+++++...+|++++++++ |.+++.+...+.... ..+........ .+ .+.++.+|+.
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~---~~~~i~dl~~~~~~~-------~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~ 208 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR---RLVLHNDLIRSRLAY-------ALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELA 208 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC---eeEEEeccccCHHHH-------HHHHHHHHHhccCceeeccchHHHHhhcCHHHHH
Confidence 999999888899999999988 566665544432110 00000000000 00 1345899999
Q ss_pred HHHHhcCCceeEEEEcC
Q 018775 323 KLLEQGGFHRCKIISMP 339 (350)
Q Consensus 323 ~ll~~aGf~~~~~~~~~ 339 (350)
+++++ ||++...++..
T Consensus 209 ~ll~~-Gf~~~~~~~~~ 224 (232)
T PRK06202 209 ALAPQ-GWRVERQWPFR 224 (232)
T ss_pred HHhhC-CCeEEecccee
Confidence 99999 99988877654
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-15 Score=114.30 Aligned_cols=87 Identities=25% Similarity=0.393 Sum_probs=59.4
Q ss_pred EEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CC---CeEEEeccCCCC-CC-CccEEEecchhccCC
Q 018775 191 ADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CE---GIFHVGGDMFDA-IP-KADAVFMKWILHDWD 258 (350)
Q Consensus 191 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~---~i~~~~~d~~~~-~p-~~D~i~~~~vlh~~~ 258 (350)
||||||+|.++..+++++|..+++++|+ +.+++.+++ .. ++++...|..+. .+ .||+|++.+++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 999988876 12 344445555542 33 699999999999994
Q ss_pred hHHHHHHHHHHHhhCCCCCceE
Q 018775 259 DEACVKILKNCRQAIPDKSGKL 280 (350)
Q Consensus 259 ~~~~~~~L~~~~~~L~~pgG~l 280 (350)
+...+|+++++.|+ |||+|
T Consensus 81 --~~~~~l~~~~~~L~-pgG~l 99 (99)
T PF08242_consen 81 --DIEAVLRNIYRLLK-PGGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-T-SS-EE
T ss_pred --hHHHHHHHHHHHcC-CCCCC
Confidence 45689999999999 99986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-13 Score=119.00 Aligned_cols=150 Identities=13% Similarity=0.112 Sum_probs=107.5
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-CCCC--ccEEEecchhccCChHH
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-AIPK--ADAVFMKWILHDWDDEA 261 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~p~--~D~i~~~~vlh~~~~~~ 261 (350)
++.+|||||||+|..+..+++.+ +.+++++|. ++|++.+++. ..++.+|+.+ |+++ ||+|++..+||++++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~- 126 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI- 126 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH-
Confidence 46899999999999999999887 578999999 9999998753 3467889888 7663 9999999999998775
Q ss_pred HHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh-------HhhhcCCc------------ccCCHHHHH
Q 018775 262 CVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV-------MFAHTTGG------------KERTEQEWM 322 (350)
Q Consensus 262 ~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~------------~~~s~~e~~ 322 (350)
.+.|++++++|+ | .+.++|...++.... ..+..+. +....++. ...+.+++.
T Consensus 127 -~~~l~e~~RvLk-p--~~~ile~~~p~~~~~-----~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~ 197 (226)
T PRK05785 127 -EKVIAEFTRVSR-K--QVGFIAMGKPDNVIK-----RKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHR 197 (226)
T ss_pred -HHHHHHHHHHhc-C--ceEEEEeCCCCcHHH-----HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHH
Confidence 478999999999 9 344566554432210 0111111 11111101 123789999
Q ss_pred HHHHhcCCceeEEEEcC-CceeEEEEee
Q 018775 323 KLLEQGGFHRCKIISMP-ALYSIIEAYP 349 (350)
Q Consensus 323 ~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 349 (350)
++++++| ..++.+.+. |...+..++|
T Consensus 198 ~~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 198 EIFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHHh-CceEEEEccccEEEEEEEee
Confidence 9999984 778888875 4456777776
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-13 Score=128.29 Aligned_cols=155 Identities=13% Similarity=0.087 Sum_probs=116.2
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---CCCeEEEeccCCCCCCCccEEE
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---CEGIFHVGGDMFDAIPKADAVF 249 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~~~p~~D~i~ 249 (350)
..+++.+. ..++.+|||||||+|.++..+++.+ +.+++++|+ +++++.+++ ...+++...|+.+....||+|+
T Consensus 157 ~~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Iv 233 (383)
T PRK11705 157 DLICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIV 233 (383)
T ss_pred HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEE
Confidence 44566666 6788999999999999999998875 679999999 888887764 2357888888765324599999
Q ss_pred ecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcC
Q 018775 250 MKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGG 329 (350)
Q Consensus 250 ~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aG 329 (350)
+..+++|.++.....++++++++|+ |||++++.+...+..... ...+.+. ..++++...+.+++.+.++ .|
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~Lk-pGG~lvl~~i~~~~~~~~----~~~~i~~---yifp~g~lps~~~i~~~~~-~~ 304 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLK-PDGLFLLHTIGSNKTDTN----VDPWINK---YIFPNGCLPSVRQIAQASE-GL 304 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcC-CCcEEEEEEccCCCCCCC----CCCCcee---eecCCCcCCCHHHHHHHHH-CC
Confidence 9999999988777899999999999 999999987655443211 0111111 1234366778899888766 58
Q ss_pred CceeEEEEcCC
Q 018775 330 FHRCKIISMPA 340 (350)
Q Consensus 330 f~~~~~~~~~~ 340 (350)
|.+..+..++.
T Consensus 305 ~~v~d~~~~~~ 315 (383)
T PRK11705 305 FVMEDWHNFGA 315 (383)
T ss_pred cEEEEEecChh
Confidence 99888766543
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-13 Score=120.08 Aligned_cols=136 Identities=19% Similarity=0.216 Sum_probs=103.7
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--CCCeEEEeccCCC-CCC--CccEEEecchhccCCh
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--CEGIFHVGGDMFD-AIP--KADAVFMKWILHDWDD 259 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~~~ 259 (350)
...+|||||||+|.++..+++.+|..+++++|. +.+++.++. ..+++++.+|+.+ +++ .||+|++..++|+.++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 457999999999999999999999999999999 788776654 3578999999988 544 3999999999998765
Q ss_pred HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEE
Q 018775 260 EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII 336 (350)
Q Consensus 260 ~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~ 336 (350)
. ..+|++++++|+ |||.+++.+...... ..+.... .... ....+.++|.+++.++ |..+.+.
T Consensus 114 ~--~~~l~~~~~~L~-~~G~l~~~~~~~~~~--------~~~~~~~--~~~~-~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 114 L--SQALSELARVLK-PGGLLAFSTFGPGTL--------HELRQSF--GQHG-LRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred H--HHHHHHHHHHcC-CCcEEEEEeCCccCH--------HHHHHHH--HHhc-cCCCCHHHHHHHHHHh-cCCcEEE
Confidence 4 578999999999 999999875433221 0111111 1012 3456789999999998 8876553
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=120.90 Aligned_cols=144 Identities=17% Similarity=0.135 Sum_probs=102.0
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCCCccEEEecchhc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIPKADAVFMKWILH 255 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p~~D~i~~~~vlh 255 (350)
..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .+++.+..+|+......||+|++..++|
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhh
Confidence 3467899999999999999999875 45999999 888887764 2579999999544444699999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhh-----hcCCcccCCHHHHHHHHHhcCC
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFA-----HTTGGKERTEQEWMKLLEQGGF 330 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~e~~~ll~~aGf 330 (350)
|+++++...+++++.+.++ +++.+.+ . +.... .......... ........+.++|.++++++||
T Consensus 139 ~~~~~~~~~~l~~l~~~~~-~~~~i~~-~---~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 207 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTR-GSLIFTF-A---PYTPL------LALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGF 207 (230)
T ss_pred cCCHHHHHHHHHHHHhhcC-CeEEEEE-C---CccHH------HHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCC
Confidence 9999988999999999766 5443322 1 11000 0011110000 0011234578999999999999
Q ss_pred ceeEEEEcCC
Q 018775 331 HRCKIISMPA 340 (350)
Q Consensus 331 ~~~~~~~~~~ 340 (350)
++.++.+...
T Consensus 208 ~~~~~~~~~~ 217 (230)
T PRK07580 208 KVVRTERISS 217 (230)
T ss_pred ceEeeeeccc
Confidence 9999888653
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.2e-14 Score=116.02 Aligned_cols=166 Identities=14% Similarity=0.178 Sum_probs=123.5
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC--CCCCccEE
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD--AIPKADAV 248 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~--~~p~~D~i 248 (350)
+..++..++ .....+|+|+|||+|..+..|++++|+..++++|. ++|++.|+. ..+++|..+|+.+ |.++.|++
T Consensus 19 a~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dll 96 (257)
T COG4106 19 ARDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLL 96 (257)
T ss_pred HHHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchh
Confidence 456777888 78899999999999999999999999999999999 999998875 7889999999998 44469999
Q ss_pred EecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhh--------hhHhh--hcCCcccCCH
Q 018775 249 FMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFD--------LVMFA--HTTGGKERTE 318 (350)
Q Consensus 249 ~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~--------~~~~~--~~~~~~~~s~ 318 (350)
+.+.+||-+++. .++|.++...|. |||.|.+.= ++....+. ...+.+ -.+.. ... ....+.
T Consensus 97 faNAvlqWlpdH--~~ll~rL~~~L~-Pgg~LAVQm---PdN~deps--H~~mr~~A~~~p~~~~l~~~~~~r-~~v~s~ 167 (257)
T COG4106 97 FANAVLQWLPDH--PELLPRLVSQLA-PGGVLAVQM---PDNLDEPS--HRLMRETADEAPFAQELGGRGLTR-APLPSP 167 (257)
T ss_pred hhhhhhhhcccc--HHHHHHHHHhhC-CCceEEEEC---CCccCchh--HHHHHHHHhcCchhhhhCcccccc-CCCCCH
Confidence 999999987876 578999999999 999988732 22211110 001111 11111 011 345589
Q ss_pred HHHHHHHHhcCCceeEE-----EEcCCceeEEEEee
Q 018775 319 QEWMKLLEQGGFHRCKI-----ISMPALYSIIEAYP 349 (350)
Q Consensus 319 ~e~~~ll~~aGf~~~~~-----~~~~~~~~vi~~~~ 349 (350)
..+-++|...+-++-.. +++++-..++++.|
T Consensus 168 a~Yy~lLa~~~~rvDiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 168 AAYYELLAPLACRVDIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred HHHHHHhCcccceeeeeeeeccccCCCccchhhhee
Confidence 99999999998554322 33456677777765
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-14 Score=120.85 Aligned_cols=143 Identities=17% Similarity=0.125 Sum_probs=105.1
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---C--CCeEEEeccCCC-CC--CCccEEEecchhcc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---C--EGIFHVGGDMFD-AI--PKADAVFMKWILHD 256 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~--~~i~~~~~d~~~-~~--p~~D~i~~~~vlh~ 256 (350)
.+.+|||||||.|.++..+++.. .+++++|. +..++.|+. . -.+.+.+...++ .. ..||+|+|..||+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 58899999999999999999985 78999999 899998874 2 234466666665 22 36999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhh-hHhhhcCCc-----ccCCHHHHHHHHHhcCC
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDL-VMFAHTTGG-----KERTEQEWMKLLEQGGF 330 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~s~~e~~~ll~~aGf 330 (350)
.++++ .+++++.+.+| |||.+++.......... ....+.. ..+...+.| +...++|+..++.++|+
T Consensus 137 v~dp~--~~~~~c~~lvk-P~G~lf~STinrt~ka~-----~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~ 208 (243)
T COG2227 137 VPDPE--SFLRACAKLVK-PGGILFLSTINRTLKAY-----LLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANL 208 (243)
T ss_pred cCCHH--HHHHHHHHHcC-CCcEEEEeccccCHHHH-----HHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCc
Confidence 99886 58999999999 99999987766433211 1111111 111122211 34478999999999999
Q ss_pred ceeEEEEc
Q 018775 331 HRCKIISM 338 (350)
Q Consensus 331 ~~~~~~~~ 338 (350)
.......+
T Consensus 209 ~~~~~~g~ 216 (243)
T COG2227 209 KIIDRKGL 216 (243)
T ss_pred eEEeecce
Confidence 98877554
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-14 Score=121.40 Aligned_cols=143 Identities=17% Similarity=0.137 Sum_probs=106.7
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--------CC----CeEEEeccCCCCCCCccEEEecch
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--------CE----GIFHVGGDMFDAIPKADAVFMKWI 253 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~----~i~~~~~d~~~~~p~~D~i~~~~v 253 (350)
+++|||||||.|.++..|++.. .+++++|. +.+++.|++ .. |+++.+.|.+...+.||+|+|+.+
T Consensus 90 g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 5789999999999999999974 68999999 899988875 22 577888888876566999999999
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCC----cccCCHHHHHHHHHhcC
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTG----GKERTEQEWMKLLEQGG 329 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~s~~e~~~ll~~aG 329 (350)
++|..++ +.+++.+.+.|+ |||+++|......-.... ......+........| .+..++++..+++..+|
T Consensus 168 leHV~dp--~~~l~~l~~~lk-P~G~lfittinrt~lS~~---~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~ 241 (282)
T KOG1270|consen 168 LEHVKDP--QEFLNCLSALLK-PNGRLFITTINRTILSFA---GTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANG 241 (282)
T ss_pred HHHHhCH--HHHHHHHHHHhC-CCCceEeeehhhhHHHhh---ccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcC
Confidence 9996554 689999999999 999999987665443221 0111112222211111 24458999999999999
Q ss_pred CceeEEEE
Q 018775 330 FHRCKIIS 337 (350)
Q Consensus 330 f~~~~~~~ 337 (350)
+++..+.-
T Consensus 242 ~~v~~v~G 249 (282)
T KOG1270|consen 242 AQVNDVVG 249 (282)
T ss_pred cchhhhhc
Confidence 99877643
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.51 E-value=5e-13 Score=112.09 Aligned_cols=134 Identities=16% Similarity=0.219 Sum_probs=106.8
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCCCccEEEecchhccC
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIPKADAVFMKWILHDW 257 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p~~D~i~~~~vlh~~ 257 (350)
.++.+|||+|||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|..+ ..+.||+|+++...|+.
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPL 95 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCC
Confidence 3457899999999999999999876 8999999 888887664 2468889999887 33469999998877765
Q ss_pred ChH-------------------HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCH
Q 018775 258 DDE-------------------ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTE 318 (350)
Q Consensus 258 ~~~-------------------~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 318 (350)
++. ....+++++.++|+ |||++++.+.... ..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-~gG~~~~~~~~~~----------------------------~~ 146 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILK-EGGRVQLIQSSLN----------------------------GE 146 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhC-CCCEEEEEEeccC----------------------------Ch
Confidence 432 13578999999999 9999998652211 15
Q ss_pred HHHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 319 QEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 319 ~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
.++.+.+++.||....+..-+.++-.++++|
T Consensus 147 ~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 147 PDTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred HHHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 7778899999999999888888888888876
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-13 Score=120.93 Aligned_cols=137 Identities=20% Similarity=0.255 Sum_probs=99.7
Q ss_pred CCcceEEEecCCchHHH-HHHH-HHCCCCcEEEecc-hhHhhhCCC--------CCCeEEEeccCCCCC---CCccEEEe
Q 018775 185 DSIQSLADVGGGTGGAL-AEIV-KSYPHIKGINFDL-PHVVATAPV--------CEGIFHVGGDMFDAI---PKADAVFM 250 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~-~~l~-~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~~~---p~~D~i~~ 250 (350)
.++.+|+|||||.|.++ +.++ +.+|+.+++++|. +++++.|++ .++++|+.+|..+.. .+||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 47899999999987543 3333 4689999999999 888887664 478999999998732 35999999
Q ss_pred cchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCC
Q 018775 251 KWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGF 330 (350)
Q Consensus 251 ~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf 330 (350)
. ++|+|..++-.++|+++++.|+ |||.+++--. .. ...+.+ + ....++.+ ||
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~Lk-PGG~Lvlr~~---~G----------~r~~LY----p---~v~~~~~~------gf 253 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMA-PGALLMLRSA---HG----------ARAFLY----P---VVDPCDLR------GF 253 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcC-CCcEEEEecc---cc----------hHhhcC----C---CCChhhCC------Ce
Confidence 9 9999976777899999999999 9999986321 10 001111 1 11233322 99
Q ss_pred ceeEEEEc-CC-ceeEEEEee
Q 018775 331 HRCKIISM-PA-LYSIIEAYP 349 (350)
Q Consensus 331 ~~~~~~~~-~~-~~~vi~~~~ 349 (350)
++..+++- +. ..+||.++|
T Consensus 254 ~~~~~~~P~~~v~Nsvi~~r~ 274 (296)
T PLN03075 254 EVLSVFHPTDEVINSVIIARK 274 (296)
T ss_pred EEEEEECCCCCceeeEEEEEe
Confidence 98877654 33 478999987
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-12 Score=113.01 Aligned_cols=144 Identities=15% Similarity=0.214 Sum_probs=101.2
Q ss_pred hcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhh----hCCCCCCeEEEeccCCCC-----CC-CccE
Q 018775 179 HYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVA----TAPVCEGIFHVGGDMFDA-----IP-KADA 247 (350)
Q Consensus 179 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~----~a~~~~~i~~~~~d~~~~-----~p-~~D~ 247 (350)
.++ ..++.+|||+|||+|.++..+++..+..+++++|. +++++ .+++..++.++.+|...+ ++ .+|+
T Consensus 67 ~l~--i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~ 144 (226)
T PRK04266 67 NFP--IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDV 144 (226)
T ss_pred hCC--CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCE
Confidence 355 67889999999999999999999887668999999 77666 334346789999998753 22 3899
Q ss_pred EEecchhccCChH-HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHH
Q 018775 248 VFMKWILHDWDDE-ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLE 326 (350)
Q Consensus 248 i~~~~vlh~~~~~-~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~ 326 (350)
|++ +.+++ ....+|++++++|+ |||+++|.=...+.+.. .. .. +..++..++++
T Consensus 145 i~~-----d~~~p~~~~~~L~~~~r~LK-pGG~lvI~v~~~~~d~~-----------------~~-~~-~~~~~~~~~l~ 199 (226)
T PRK04266 145 IYQ-----DVAQPNQAEIAIDNAEFFLK-DGGYLLLAIKARSIDVT-----------------KD-PK-EIFKEEIRKLE 199 (226)
T ss_pred EEE-----CCCChhHHHHHHHHHHHhcC-CCcEEEEEEecccccCc-----------------CC-HH-HHHHHHHHHHH
Confidence 984 34333 33457899999999 99999994221111000 00 01 11244459999
Q ss_pred hcCCceeEEEEcCCc---eeEEEEee
Q 018775 327 QGGFHRCKIISMPAL---YSIIEAYP 349 (350)
Q Consensus 327 ~aGf~~~~~~~~~~~---~~vi~~~~ 349 (350)
++||+.++.+.+... +..+.+++
T Consensus 200 ~aGF~~i~~~~l~p~~~~h~~~v~~~ 225 (226)
T PRK04266 200 EGGFEILEVVDLEPYHKDHAAVVARK 225 (226)
T ss_pred HcCCeEEEEEcCCCCcCCeEEEEEEc
Confidence 999999999888544 66776665
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.9e-13 Score=119.05 Aligned_cols=146 Identities=12% Similarity=0.110 Sum_probs=105.1
Q ss_pred hHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCC--Ccc
Q 018775 172 VMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIP--KAD 246 (350)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p--~~D 246 (350)
.+..+++.++ ..+..+|||+|||+|.++..+.+. +.+++++|+ +.+++.+++ ...+.++.+|+.+ +++ .||
T Consensus 30 ~a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD 105 (251)
T PRK10258 30 SADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFD 105 (251)
T ss_pred HHHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEE
Confidence 3455666666 446789999999999999888764 568999999 899988875 3346788999988 655 399
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh-HhhhcC-CcccCCHHHHHHH
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV-MFAHTT-GGKERTEQEWMKL 324 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~s~~e~~~l 324 (350)
+|+++.++|+.++. ..+|++++++|+ |||.+++.......-. .+.... ...... .....+.++|.++
T Consensus 106 ~V~s~~~l~~~~d~--~~~l~~~~~~Lk-~gG~l~~~~~~~~~~~--------el~~~~~~~~~~~~~~~~~~~~~l~~~ 174 (251)
T PRK10258 106 LAWSNLAVQWCGNL--STALRELYRVVR-PGGVVAFTTLVQGSLP--------ELHQAWQAVDERPHANRFLPPDAIEQA 174 (251)
T ss_pred EEEECchhhhcCCH--HHHHHHHHHHcC-CCeEEEEEeCCCCchH--------HHHHHHHHhccCCccccCCCHHHHHHH
Confidence 99999999876654 578999999999 9999998765433211 111110 000011 0234588999999
Q ss_pred HHhcCCce
Q 018775 325 LEQGGFHR 332 (350)
Q Consensus 325 l~~aGf~~ 332 (350)
+...|+..
T Consensus 175 l~~~~~~~ 182 (251)
T PRK10258 175 LNGWRYQH 182 (251)
T ss_pred HHhCCcee
Confidence 99888764
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-13 Score=132.20 Aligned_cols=143 Identities=15% Similarity=0.238 Sum_probs=110.2
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC---CCC--
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD---AIP-- 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~---~~p-- 243 (350)
..+++.++ ..++.+|||||||+|.++..+++.+ .+++++|. +.+++.++. ..+++++.+|+.+ ++|
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 44555555 4456799999999999999999875 47899999 888876543 4579999999964 344
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHH
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMK 323 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ 323 (350)
.||+|++..++||+++++..+++++++++|+ |||++++.|.......... . ...+ ...++..+|.+
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk-~gG~l~~~d~~~~~~~~~~-----~-------~~~~-~~~~~~~~~~~ 168 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLK-VGGYIFFRESCFHQSGDSK-----R-------KNNP-THYREPRFYTK 168 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcC-CCeEEEEEeccCCCCCccc-----c-------cCCC-CeecChHHHHH
Confidence 4999999999999999888899999999999 9999999887654432110 0 0112 33456889999
Q ss_pred HHHhcCCceeE
Q 018775 324 LLEQGGFHRCK 334 (350)
Q Consensus 324 ll~~aGf~~~~ 334 (350)
++.++||....
T Consensus 169 ~f~~~~~~~~~ 179 (475)
T PLN02336 169 VFKECHTRDED 179 (475)
T ss_pred HHHHheeccCC
Confidence 99999998664
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4e-13 Score=121.12 Aligned_cols=131 Identities=16% Similarity=0.066 Sum_probs=101.1
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC-CccEEEecchhccC
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP-KADAVFMKWILHDW 257 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh~~ 257 (350)
++.+|||||||+|..+..+++. +.+++++|. +.+++.+++ .-++++...|+.. +.+ .||+|++..++|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhC
Confidence 4569999999999999999885 578999999 888876653 3368888888877 444 49999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEE
Q 018775 258 DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII 336 (350)
Q Consensus 258 ~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~ 336 (350)
++++...++++++++|+ |||.+++++....+....+ .+....++.+|+.++++. |+++...
T Consensus 198 ~~~~~~~~l~~~~~~Lk-pgG~~l~v~~~~~~~~~~~---------------~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 198 NRERIPAIIKNMQEHTN-PGGYNLIVCAMDTEDYPCP---------------MPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred CHHHHHHHHHHHHHhcC-CCcEEEEEEecccccCCCC---------------CCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 98888999999999999 9999888765543322110 000233568999999965 8888764
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-13 Score=121.06 Aligned_cols=99 Identities=19% Similarity=0.282 Sum_probs=83.1
Q ss_pred CCcceEEEecCCchH----HHHHHHHHCC-----CCcEEEecc-hhHhhhCCCC--------------------------
Q 018775 185 DSIQSLADVGGGTGG----ALAEIVKSYP-----HIKGINFDL-PHVVATAPVC-------------------------- 228 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~-------------------------- 228 (350)
.+..+|+|+|||+|. +++.+++.++ +.++++.|+ +.+++.|++.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 456899999999996 4555666554 578999999 8999887751
Q ss_pred -------CCeEEEeccCCC-CCC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 229 -------EGIFHVGGDMFD-AIP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 229 -------~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
.+|+|..+|+.+ +.+ .||+|+|.++|||+++++..+++++++++|+ |||.|++-.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~-pGG~L~lg~ 242 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALK-PGGYLFLGH 242 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhC-CCeEEEEEC
Confidence 378999999998 433 4999999999999998888899999999999 999999844
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=7e-13 Score=112.02 Aligned_cols=125 Identities=23% Similarity=0.354 Sum_probs=96.9
Q ss_pred HHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC-CccEE
Q 018775 177 VSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP-KADAV 248 (350)
Q Consensus 177 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p-~~D~i 248 (350)
++.++ ..++.+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|...+.+ .||+|
T Consensus 24 ~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v 101 (187)
T PRK08287 24 LSKLE--LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAI 101 (187)
T ss_pred HHhcC--CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEE
Confidence 34444 56788999999999999999999999999999999 888877754 2578999999865444 49999
Q ss_pred EecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhc
Q 018775 249 FMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQG 328 (350)
Q Consensus 249 ~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~a 328 (350)
++....++ ...+++++++.|+ |||++++..... .+.+++.+++++.
T Consensus 102 ~~~~~~~~-----~~~~l~~~~~~Lk-~gG~lv~~~~~~----------------------------~~~~~~~~~l~~~ 147 (187)
T PRK08287 102 FIGGSGGN-----LTAIIDWSLAHLH-PGGRLVLTFILL----------------------------ENLHSALAHLEKC 147 (187)
T ss_pred EECCCccC-----HHHHHHHHHHhcC-CCeEEEEEEecH----------------------------hhHHHHHHHHHHC
Confidence 99766543 3467999999999 999997733110 1256777899999
Q ss_pred CCceeEEEE
Q 018775 329 GFHRCKIIS 337 (350)
Q Consensus 329 Gf~~~~~~~ 337 (350)
||+.+++..
T Consensus 148 g~~~~~~~~ 156 (187)
T PRK08287 148 GVSELDCVQ 156 (187)
T ss_pred CCCcceEEE
Confidence 998776533
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.1e-13 Score=115.35 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=88.8
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCCCCC--CccEEEecchhccCCh
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFDAIP--KADAVFMKWILHDWDD 259 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~~p--~~D~i~~~~vlh~~~~ 259 (350)
..++.+|||||||+|..+..+++..|+.+++++|+ +++++.+++ ..++.+..+|+.++++ .||+|++..+|||+++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 34677999999999999999999888899999999 899999876 4668889999888654 4999999999999988
Q ss_pred HHHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 260 EACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 260 ~~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
++..+++++++++++ +.++|.|...+.
T Consensus 121 ~~~~~~l~el~r~~~---~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCSN---RYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhcC---cEEEEEEeeCCC
Confidence 888999999999976 688888875444
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.6e-14 Score=106.84 Aligned_cols=88 Identities=24% Similarity=0.373 Sum_probs=74.4
Q ss_pred EEEecCCchHHHHHHHHHC---CCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CC--CCccEEEec-chhcc
Q 018775 190 LADVGGGTGGALAEIVKSY---PHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AI--PKADAVFMK-WILHD 256 (350)
Q Consensus 190 vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~--p~~D~i~~~-~vlh~ 256 (350)
|||+|||+|..+..+++.+ |..+++++|+ +++++.+++ ..++++++.|+.+ ++ +.||+|++. .++||
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999987 5689999999 899887765 3589999999988 53 359999995 55999
Q ss_pred CChHHHHHHHHHHHhhCCCCCc
Q 018775 257 WDDEACVKILKNCRQAIPDKSG 278 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG 278 (350)
+++++..++++++.++|+ |||
T Consensus 81 ~~~~~~~~ll~~~~~~l~-pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLR-PGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEE-EEE
T ss_pred CCHHHHHHHHHHHHHHhC-CCC
Confidence 999999999999999999 997
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.6e-12 Score=108.64 Aligned_cols=132 Identities=14% Similarity=0.077 Sum_probs=101.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC------------------CCCCeEEEeccCCC-C---
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP------------------VCEGIFHVGGDMFD-A--- 241 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~~i~~~~~d~~~-~--- 241 (350)
.++.+|||+|||.|..+..|+++ +..++++|+ +.+++.+. +..+|+++.+|+++ +
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45689999999999999999986 678999999 88777631 13479999999998 4
Q ss_pred CCCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHH
Q 018775 242 IPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEW 321 (350)
Q Consensus 242 ~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~ 321 (350)
.+.||+|+-..++||++.+.....++++.++|+ |||++++.....+..... .+ ....+.+++
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLk-pgG~~ll~~~~~~~~~~~----------------gp-p~~~~~~eL 172 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLP-PGARQLLITLDYDQSEMA----------------GP-PFSVSPAEV 172 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcC-CCCeEEEEEEEcCCCCCC----------------Cc-CCCCCHHHH
Confidence 235999999999999999998999999999999 999988776655332110 01 124578999
Q ss_pred HHHHHhcCCceeEEEE
Q 018775 322 MKLLEQGGFHRCKIIS 337 (350)
Q Consensus 322 ~~ll~~aGf~~~~~~~ 337 (350)
.++|+. +|.+..+..
T Consensus 173 ~~~f~~-~~~i~~~~~ 187 (213)
T TIGR03840 173 EALYGG-HYEIELLES 187 (213)
T ss_pred HHHhcC-CceEEEEee
Confidence 998864 455554433
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.7e-13 Score=110.16 Aligned_cols=174 Identities=18% Similarity=0.140 Sum_probs=117.7
Q ss_pred HHHHHHHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCe
Q 018775 159 NLFNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGI 231 (350)
Q Consensus 159 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i 231 (350)
..|+..|..+.+.....+-..+. .+....||+||||+|..-.. ..--|..++|.+|. +.|-+.+.+ ...+
T Consensus 51 ~~yne~~~~ykrelFs~i~~~~g--k~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~ 127 (252)
T KOG4300|consen 51 SIYNEIADSYKRELFSGIYYFLG--KSGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQV 127 (252)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhc--ccCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHhhccCcce
Confidence 34666666665444444332333 45677899999999976432 22236788999998 777776543 4556
Q ss_pred E-EEeccCCC-C-CC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhH
Q 018775 232 F-HVGGDMFD-A-IP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVM 306 (350)
Q Consensus 232 ~-~~~~d~~~-~-~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~ 306 (350)
. |+.++.++ + .+ +||+|++..+|.- .++.++.|++++++|+ |||+++++|....+....++ -.....+-..
T Consensus 128 ~~fvva~ge~l~~l~d~s~DtVV~TlvLCS--ve~~~k~L~e~~rlLR-pgG~iifiEHva~~y~~~n~-i~q~v~ep~~ 203 (252)
T KOG4300|consen 128 ERFVVADGENLPQLADGSYDTVVCTLVLCS--VEDPVKQLNEVRRLLR-PGGRIIFIEHVAGEYGFWNR-ILQQVAEPLW 203 (252)
T ss_pred EEEEeechhcCcccccCCeeeEEEEEEEec--cCCHHHHHHHHHHhcC-CCcEEEEEecccccchHHHH-HHHHHhchhh
Confidence 6 88888877 4 34 4999999999986 5556799999999999 99999999988876553211 0001112111
Q ss_pred hhhcCCcccCCHHHHHHHHHhcCCceeEEEEcCCc
Q 018775 307 FAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPAL 341 (350)
Q Consensus 307 ~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~~ 341 (350)
..... |...+.+.| +.|+++-|+..+....+.+
T Consensus 204 ~~~~d-GC~ltrd~~-e~Leda~f~~~~~kr~~~~ 236 (252)
T KOG4300|consen 204 HLESD-GCVLTRDTG-ELLEDAEFSIDSCKRFNFG 236 (252)
T ss_pred heecc-ceEEehhHH-HHhhhcccccchhhcccCC
Confidence 22222 666788887 6778999999888776543
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.7e-12 Score=115.48 Aligned_cols=96 Identities=15% Similarity=0.284 Sum_probs=79.1
Q ss_pred CcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC--CC-Cc-----cEE
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA--IP-KA-----DAV 248 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~--~p-~~-----D~i 248 (350)
++.+|||+|||+|..+..|+++.+ ..+++++|+ +++++.+.+ ..+|.++++|+.+. .+ .+ .++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 567899999999999999999987 689999999 888776643 23567789999872 33 23 355
Q ss_pred EecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 249 FMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 249 ~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
++...+++++++++..+|++++++|+ |||.++|
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~-pgG~~li 175 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLG-PGGGLLI 175 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcC-CCCEEEE
Confidence 56688999999999999999999999 9999986
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-12 Score=108.50 Aligned_cols=123 Identities=14% Similarity=0.076 Sum_probs=92.5
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CC-CCccEEEecchhcc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AI-PKADAVFMKWILHD 256 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~-p~~D~i~~~~vlh~ 256 (350)
++.+|||||||+|..+..++...|+.+++++|. +.+++.+++ .++++++.+|+.+ +. +.||+|++.. +++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~ 120 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS 120 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC
Confidence 378999999999999999998899999999999 777765543 3469999999987 32 3599998866 554
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHh---cCCcee
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQ---GGFHRC 333 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~---aGf~~~ 333 (350)
...+++.+++.|+ |||++++... . . ...++.++.++ .||+.+
T Consensus 121 -----~~~~~~~~~~~Lk-pgG~lvi~~~---~-----------------------~---~~~~~~~~~e~~~~~~~~~~ 165 (181)
T TIGR00138 121 -----LNVLLELTLNLLK-VGGYFLAYKG---K-----------------------K---YLDEIEEAKRKCQVLGVEPL 165 (181)
T ss_pred -----HHHHHHHHHHhcC-CCCEEEEEcC---C-----------------------C---cHHHHHHHHHhhhhcCceEe
Confidence 2357888999999 9999986420 0 0 13444444444 799999
Q ss_pred EEEEcCCceeE
Q 018775 334 KIISMPALYSI 344 (350)
Q Consensus 334 ~~~~~~~~~~v 344 (350)
++.+...+..-
T Consensus 166 ~~~~~~~~~~~ 176 (181)
T TIGR00138 166 EVPPLTGPDRH 176 (181)
T ss_pred eccccCCCceE
Confidence 99888665443
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-12 Score=113.80 Aligned_cols=142 Identities=18% Similarity=0.157 Sum_probs=98.7
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHh------hhCCC-CCCeEEEeccCCC-CC-CCccEEEecchh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVV------ATAPV-CEGIFHVGGDMFD-AI-PKADAVFMKWIL 254 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~------~~a~~-~~~i~~~~~d~~~-~~-p~~D~i~~~~vl 254 (350)
-.+.+|||||||.|.++.+++.+.+. .++++|. +... +..-. ..++.+...-+++ +. ..||+|++..||
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVL 192 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVL 192 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeeh
Confidence 35789999999999999999998654 6889995 3222 22221 2334444344444 32 349999999999
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCC---cccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNN---IFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
+|..++ ...|+++++.|+ |||.|++=..+.+.+... |..+++ .+-+--...|...+..+++++||+
T Consensus 193 YHrr~P--l~~L~~Lk~~L~-~gGeLvLETlvi~g~~~~~L~P~~rYa--------~m~nv~FiPs~~~L~~wl~r~gF~ 261 (315)
T PF08003_consen 193 YHRRSP--LDHLKQLKDSLR-PGGELVLETLVIDGDENTVLVPEDRYA--------KMRNVWFIPSVAALKNWLERAGFK 261 (315)
T ss_pred hccCCH--HHHHHHHHHhhC-CCCEEEEEEeeecCCCceEEccCCccc--------CCCceEEeCCHHHHHHHHHHcCCc
Confidence 997665 578999999999 999998766666654432 111111 011102345899999999999999
Q ss_pred eeEEEEc
Q 018775 332 RCKIISM 338 (350)
Q Consensus 332 ~~~~~~~ 338 (350)
.++++..
T Consensus 262 ~v~~v~~ 268 (315)
T PF08003_consen 262 DVRCVDV 268 (315)
T ss_pred eEEEecC
Confidence 9998765
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.6e-13 Score=111.66 Aligned_cols=139 Identities=21% Similarity=0.264 Sum_probs=96.4
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCC-eEEEeccCCC--CCC-CccEEEecchh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEG-IFHVGGDMFD--AIP-KADAVFMKWIL 254 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~-i~~~~~d~~~--~~p-~~D~i~~~~vl 254 (350)
.+..+.||.|+|+|+.+..++..+- -++-.+|. +..++.|++ ..+ .++.+.-+.+ |.+ .||+||+.|++
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CCcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 3578999999999999998776442 25566666 677776663 233 4455544444 443 49999999999
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeE
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCK 334 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~ 334 (350)
-|++|++.+++|++++++|+ |+|.|+|=|.+...+.. .+|- ..+ .-.|+.+.|.++|++||+++++
T Consensus 133 ghLTD~dlv~fL~RCk~~L~-~~G~IvvKEN~~~~~~~--------~~D~----~Ds-SvTRs~~~~~~lF~~AGl~~v~ 198 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALK-PNGVIVVKENVSSSGFD--------EFDE----EDS-SVTRSDEHFRELFKQAGLRLVK 198 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEE-EEEEEEEEEEEESSSEE--------EEET----TTT-EEEEEHHHHHHHHHHCT-EEEE
T ss_pred ccCCHHHHHHHHHHHHHhCc-CCcEEEEEecCCCCCCc--------ccCC----ccC-eeecCHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999 99999999988765421 1111 122 4567899999999999999998
Q ss_pred EEEc
Q 018775 335 IISM 338 (350)
Q Consensus 335 ~~~~ 338 (350)
...-
T Consensus 199 ~~~Q 202 (218)
T PF05891_consen 199 EEKQ 202 (218)
T ss_dssp EEE-
T ss_pred eccc
Confidence 7554
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-12 Score=116.74 Aligned_cols=150 Identities=14% Similarity=0.097 Sum_probs=100.5
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----------CCCeEEEeccCCCCCCCccEEEecch
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----------CEGIFHVGGDMFDAIPKADAVFMKWI 253 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~~~p~~D~i~~~~v 253 (350)
++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..++++...|+.+....||+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 4679999999999999999986 568999999 888877654 13578888887653345999999999
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCC------cccCCHHHHHHHHHh
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTG------GKERTEQEWMKLLEQ 327 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~s~~e~~~ll~~ 327 (350)
+||++++....+++++.+. . +|+. +|.. .+... ....+.. .....++ ....+.+++.++|++
T Consensus 222 L~H~p~~~~~~ll~~l~~l-~-~g~l-iIs~--~p~~~------~~~~l~~-~g~~~~g~~~~~r~y~~s~eel~~lL~~ 289 (315)
T PLN02585 222 LIHYPQDKADGMIAHLASL-A-EKRL-IISF--APKTL------YYDILKR-IGELFPGPSKATRAYLHAEADVERALKK 289 (315)
T ss_pred EEecCHHHHHHHHHHHHhh-c-CCEE-EEEe--CCcch------HHHHHHH-HHhhcCCCCcCceeeeCCHHHHHHHHHH
Confidence 9999988777888888864 5 5544 4421 11110 0001110 0011110 122379999999999
Q ss_pred cCCceeEEEEcCCce---eEEEEee
Q 018775 328 GGFHRCKIISMPALY---SIIEAYP 349 (350)
Q Consensus 328 aGf~~~~~~~~~~~~---~vi~~~~ 349 (350)
+||++.+.......+ .+++|.+
T Consensus 290 AGf~v~~~~~~~~~~y~~~l~~~~~ 314 (315)
T PLN02585 290 AGWKVARREMTATQFYFSRLLEAVP 314 (315)
T ss_pred CCCEEEEEEEeecceeHHhhhhhcc
Confidence 999988765543322 3555543
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.7e-12 Score=105.27 Aligned_cols=129 Identities=17% Similarity=0.176 Sum_probs=97.2
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC-CccEEEecchhc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP-KADAVFMKWILH 255 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh 255 (350)
+++.+|||||||+|..+..++++.|+.+++++|. +.+++.+++ .++++++.+|+.+ +.. +||+|++..+ .
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-~ 122 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-A 122 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-c
Confidence 3478999999999999999999999999999999 888877654 3359999999987 333 5999998653 1
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEE
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKI 335 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~ 335 (350)
....+++++++.|+ |||++++.+... ...++.++.+.-|+.+.++
T Consensus 123 -----~~~~~l~~~~~~Lk-pGG~lv~~~~~~-----------------------------~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 123 -----SLSDLVELCLPLLK-PGGRFLALKGRD-----------------------------PEEEIAELPKALGGKVEEV 167 (187)
T ss_pred -----CHHHHHHHHHHhcC-CCeEEEEEeCCC-----------------------------hHHHHHHHHHhcCceEeee
Confidence 24578999999999 999999763110 1455666677779998777
Q ss_pred EEc--C---CceeEEEEee
Q 018775 336 ISM--P---ALYSIIEAYP 349 (350)
Q Consensus 336 ~~~--~---~~~~vi~~~~ 349 (350)
+.. + +.....+.||
T Consensus 168 ~~~~~~~~~~~~~~~~~~~ 186 (187)
T PRK00107 168 IELTLPGLDGERHLVIIRK 186 (187)
T ss_pred EEEecCCCCCcEEEEEEec
Confidence 553 3 3444555555
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.4e-13 Score=111.23 Aligned_cols=145 Identities=19% Similarity=0.297 Sum_probs=109.8
Q ss_pred eEEEecCCchHHHHHHHHHCCC--CcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCC-----CC--CccEEEecch
Q 018775 189 SLADVGGGTGGALAEIVKSYPH--IKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDA-----IP--KADAVFMKWI 253 (350)
Q Consensus 189 ~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~-----~p--~~D~i~~~~v 253 (350)
+||+||||.|.+..-+++..|+ +++..+|. |.+++..++ ..++.....|+..+ .+ ..|.|++.++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 8999999999999999999888 88999999 888888775 45566566666652 11 3999999999
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCc--ccCCHHHHHHHHHhcCCc
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGG--KERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~e~~~ll~~aGf~ 331 (350)
|..+++++-...+++++++|| |||.|++-|....+-....+.. ...++.+..+...|. ...+.+++.++|.++||.
T Consensus 154 LSAi~pek~~~a~~nl~~llK-PGG~llfrDYg~~DlaqlRF~~-~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~ 231 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLK-PGGSLLFRDYGRYDLAQLRFKK-GQCISENFYVRGDGTRAYFFTEEELDELFTKAGFE 231 (264)
T ss_pred EeccChHHHHHHHHHHHHHhC-CCcEEEEeecccchHHHHhccC-CceeecceEEccCCceeeeccHHHHHHHHHhcccc
Confidence 999999999999999999999 9999999887766543221111 122333333322211 234899999999999998
Q ss_pred eeEE
Q 018775 332 RCKI 335 (350)
Q Consensus 332 ~~~~ 335 (350)
.++.
T Consensus 232 ~~~~ 235 (264)
T KOG2361|consen 232 EVQL 235 (264)
T ss_pred hhcc
Confidence 7764
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-12 Score=112.02 Aligned_cols=144 Identities=15% Similarity=0.087 Sum_probs=99.9
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-C--C-CCccEEEecch
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-A--I-PKADAVFMKWI 253 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~--~-p~~D~i~~~~v 253 (350)
..++.+|||||||+|.++..+++. ..+++++|. +.+++.+++ ..+++++..|+.+ + . ..||+|++.++
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~ 123 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM 123 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence 346789999999999999988875 467999998 777776653 3357788777765 2 2 24999999999
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhh-hHhhhc-----CCcccCCHHHHHHHHHh
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDL-VMFAHT-----TGGKERTEQEWMKLLEQ 327 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~s~~e~~~ll~~ 327 (350)
+++.++. ..+|+++.+.|+ |||.+++......... . ....... ...... ......+.++|.+++++
T Consensus 124 l~~~~~~--~~~l~~~~~~L~-~gG~l~v~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 195 (233)
T PRK05134 124 LEHVPDP--ASFVRACAKLVK-PGGLVFFSTLNRNLKS---Y--LLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQ 195 (233)
T ss_pred hhccCCH--HHHHHHHHHHcC-CCcEEEEEecCCChHH---H--HHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHH
Confidence 9998765 478999999999 9999987654211100 0 0000000 000000 00234578999999999
Q ss_pred cCCceeEEEE
Q 018775 328 GGFHRCKIIS 337 (350)
Q Consensus 328 aGf~~~~~~~ 337 (350)
+||+++....
T Consensus 196 ~Gf~~v~~~~ 205 (233)
T PRK05134 196 AGLEVQDITG 205 (233)
T ss_pred CCCeEeeeee
Confidence 9999998754
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-12 Score=107.69 Aligned_cols=135 Identities=16% Similarity=0.181 Sum_probs=97.3
Q ss_pred hcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCCCCC--CccEEEec
Q 018775 179 HYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFDAIP--KADAVFMK 251 (350)
Q Consensus 179 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~~p--~~D~i~~~ 251 (350)
.++ .....+++|+|||.|.++..|+.+. -+.+++|. +.+++.+++ ..+|+++..|+.+..| .||+|+++
T Consensus 38 aLp--~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 38 ALP--RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp HHT--TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEE
T ss_pred hcC--ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEe
Confidence 355 5678899999999999999999986 36888999 888888764 5789999999988544 49999999
Q ss_pred chhccCCh-HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCC
Q 018775 252 WILHDWDD-EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGF 330 (350)
Q Consensus 252 ~vlh~~~~-~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf 330 (350)
.++|++++ ++...+++++.++|+ |||.|++-... +. .... . |.....+.+.++|.+. |
T Consensus 114 EVlYYL~~~~~L~~~l~~l~~~L~-pgG~LV~g~~r-d~---------------~c~~-w--gh~~ga~tv~~~~~~~-~ 172 (201)
T PF05401_consen 114 EVLYYLDDAEDLRAALDRLVAALA-PGGHLVFGHAR-DA---------------NCRR-W--GHAAGAETVLEMLQEH-L 172 (201)
T ss_dssp S-GGGSSSHHHHHHHHHHHHHTEE-EEEEEEEEEE--HH---------------HHHH-T--T-S--HHHHHHHHHHH-S
T ss_pred hHhHcCCCHHHHHHHHHHHHHHhC-CCCEEEEEEec-CC---------------cccc-c--CcccchHHHHHHHHHH-h
Confidence 99999986 678899999999999 99999985541 11 1100 1 2333478888888886 5
Q ss_pred ceeEEEEc
Q 018775 331 HRCKIISM 338 (350)
Q Consensus 331 ~~~~~~~~ 338 (350)
..++.+.+
T Consensus 173 ~~~~~~~~ 180 (201)
T PF05401_consen 173 TEVERVEC 180 (201)
T ss_dssp EEEEEEEE
T ss_pred hheeEEEE
Confidence 66665554
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-12 Score=106.81 Aligned_cols=139 Identities=14% Similarity=0.093 Sum_probs=97.1
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC-Ccc
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP-KAD 246 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p-~~D 246 (350)
.+++.++ .-++.++||+|||.|..+..|+++ +..++.+|. +..++.+++ .-.|+....|+.+ .++ .||
T Consensus 21 ~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD 96 (192)
T PF03848_consen 21 EVLEAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYD 96 (192)
T ss_dssp HHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEE
T ss_pred HHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcC
Confidence 3445555 456789999999999999999997 678999998 766665543 4458889999988 555 499
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHH
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLE 326 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~ 326 (350)
+|++..|+++++.+....+++++.+.++ |||.+++...+..++.+.+ .. . ...++..|+.+.+.
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~-pGG~~li~~~~~~~d~p~~-------~~-------~-~f~~~~~EL~~~y~ 160 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATK-PGGYNLIVTFMETPDYPCP-------SP-------F-PFLLKPGELREYYA 160 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEE-EEEEEEEEEEB--SSS--S-------S----------S--B-TTHHHHHTT
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcC-CcEEEEEEEecccCCCCCC-------CC-------C-CcccCHHHHHHHhC
Confidence 9999999999999999999999999999 9999888665433221110 00 1 23345678888875
Q ss_pred hcCCceeEE
Q 018775 327 QGGFHRCKI 335 (350)
Q Consensus 327 ~aGf~~~~~ 335 (350)
||.+++.
T Consensus 161 --dW~il~y 167 (192)
T PF03848_consen 161 --DWEILKY 167 (192)
T ss_dssp --TSEEEEE
T ss_pred --CCeEEEE
Confidence 6888765
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-11 Score=104.61 Aligned_cols=133 Identities=14% Similarity=0.088 Sum_probs=101.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC------------------CCCCeEEEeccCCCC---
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP------------------VCEGIFHVGGDMFDA--- 241 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------------~~~~i~~~~~d~~~~--- 241 (350)
..++.+|||+|||.|..+..|+++ +.+++++|+ +..++.+. ...+|++..+|+++.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 345689999999999999999985 678999999 78777541 135799999999983
Q ss_pred -CCCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHH
Q 018775 242 -IPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQE 320 (350)
Q Consensus 242 -~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e 320 (350)
.+.||+|+-..++|+++.+.....++++.++|+ |||+++++....+..... .+ -...+.+|
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~-pgG~~~l~~~~~~~~~~~----------------gP-p~~~~~~e 174 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLP-AGCRGLLVTLDYPQEELA----------------GP-PFSVSDEE 174 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcC-CCCeEEEEEEEeCCccCC----------------CC-CCCCCHHH
Confidence 235899999999999999999999999999999 999877655554332210 01 12457899
Q ss_pred HHHHHHhcCCceeEEEE
Q 018775 321 WMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 321 ~~~ll~~aGf~~~~~~~ 337 (350)
+.+++.. +|.+..+..
T Consensus 175 l~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 175 VEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHhcC-CceEEEeee
Confidence 9999964 366655544
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.1e-12 Score=116.17 Aligned_cols=108 Identities=18% Similarity=0.299 Sum_probs=86.9
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---------CCCeEEEeccCCCCCC
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---------CEGIFHVGGDMFDAIP 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~~~p 243 (350)
.-+++.++ .....+|||+|||+|.++..+++++|..+++++|. +.+++.+++ ..+++++..|..+..+
T Consensus 218 rllL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~ 295 (378)
T PRK15001 218 RFFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE 295 (378)
T ss_pred HHHHHhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence 44566666 34456999999999999999999999999999999 778877653 1378999999987443
Q ss_pred --CccEEEecchhcc---CChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 244 --KADAVFMKWILHD---WDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 244 --~~D~i~~~~vlh~---~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
.||+|+++--+|. +++..+.+++++++++|+ |||.|+++-
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lk-pGG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLK-INGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcc-cCCEEEEEE
Confidence 5999999755543 455667799999999999 999999873
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.6e-11 Score=95.02 Aligned_cols=100 Identities=22% Similarity=0.322 Sum_probs=79.3
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC--C--CCC
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD--A--IPK 244 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~--~--~p~ 244 (350)
+++.+. ..++.+|||+|||+|.++..+++++|+.+++++|. +.+++.+++ ..+++++.+|... + .+.
T Consensus 11 ~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 11 TLSKLR--LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence 344444 55677999999999999999999999999999999 788777653 3578898888764 1 235
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
||+|++....+ ...++++++++.|+ |||++++.
T Consensus 89 ~D~v~~~~~~~-----~~~~~l~~~~~~Lk-~gG~li~~ 121 (124)
T TIGR02469 89 PDRVFIGGSGG-----LLQEILEAIWRRLR-PGGRIVLN 121 (124)
T ss_pred CCEEEECCcch-----hHHHHHHHHHHHcC-CCCEEEEE
Confidence 99999876543 34588999999999 99999874
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.1e-11 Score=106.07 Aligned_cols=123 Identities=21% Similarity=0.311 Sum_probs=94.1
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC--CccEEEecch---
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP--KADAVFMKWI--- 253 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p--~~D~i~~~~v--- 253 (350)
...+|||+|||+|.++..+++.+|+.+++++|. +.+++.++. ..+++++.+|+.++.+ .||+|+++--
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 456999999999999999999999999999999 888887754 3469999999988543 4999998422
Q ss_pred ---hccCChH------------------HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCC
Q 018775 254 ---LHDWDDE------------------ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTG 312 (350)
Q Consensus 254 ---lh~~~~~------------------~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (350)
++.+... ....+++++.++|+ |||++++.. +
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~-~gG~~~~~~--------------------------~- 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLK-PGGWLLLEI--------------------------G- 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcc-cCCEEEEEE--------------------------C-
Confidence 2222211 12478999999999 999988621 0
Q ss_pred cccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 313 GKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 313 ~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
....+++.++|+++||+.++++.-
T Consensus 219 --~~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 219 --YDQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred --ccHHHHHHHHHHhCCCCceEEEeC
Confidence 012577889999999998887664
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.4e-11 Score=111.51 Aligned_cols=107 Identities=19% Similarity=0.237 Sum_probs=84.8
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCCC-CccE
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAIP-KADA 247 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~p-~~D~ 247 (350)
.+++.++ .....+|||+|||+|.++..+++++|+.+++++|. +.+++.++. .-..+++..|..+..+ .||+
T Consensus 187 lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDl 264 (342)
T PRK09489 187 LLLSTLT--PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDM 264 (342)
T ss_pred HHHHhcc--ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccE
Confidence 3455555 33456899999999999999999999999999999 788887764 2235678888877444 4999
Q ss_pred EEecchhccC---ChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 248 VFMKWILHDW---DDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 248 i~~~~vlh~~---~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
|+++..+|+. .......+++++.+.|+ |||.++|+.
T Consensus 265 IvsNPPFH~g~~~~~~~~~~~i~~a~~~Lk-pgG~L~iVa 303 (342)
T PRK09489 265 IISNPPFHDGIQTSLDAAQTLIRGAVRHLN-SGGELRIVA 303 (342)
T ss_pred EEECCCccCCccccHHHHHHHHHHHHHhcC-cCCEEEEEE
Confidence 9999888863 23456799999999999 999999854
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-11 Score=106.85 Aligned_cols=142 Identities=17% Similarity=0.099 Sum_probs=99.3
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CC-CeEEEeccCCC-CC---CCccEEEecchh
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CE-GIFHVGGDMFD-AI---PKADAVFMKWIL 254 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~-~i~~~~~d~~~-~~---p~~D~i~~~~vl 254 (350)
.+.+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ .. ++++...|+.+ +. ..||+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 47899999999999999988864 45899998 777776654 22 58888888776 32 249999999999
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh-Hhhhc-C----CcccCCHHHHHHHHHhc
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV-MFAHT-T----GGKERTEQEWMKLLEQG 328 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~-~~~~~-~----~~~~~s~~e~~~ll~~a 328 (350)
|+..+. ..+|++++++|+ |||.+++.......... ........ ..... . .....+.++|.++++++
T Consensus 123 ~~~~~~--~~~l~~~~~~L~-~gG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 194 (224)
T TIGR01983 123 EHVPDP--QAFIRACAQLLK-PGGILFFSTINRTPKSY-----LLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA 194 (224)
T ss_pred HhCCCH--HHHHHHHHHhcC-CCcEEEEEecCCCchHH-----HHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence 998765 478999999999 99999886543211000 00000000 00000 0 01234789999999999
Q ss_pred CCceeEEEE
Q 018775 329 GFHRCKIIS 337 (350)
Q Consensus 329 Gf~~~~~~~ 337 (350)
||+++++..
T Consensus 195 G~~i~~~~~ 203 (224)
T TIGR01983 195 GLRVKDVKG 203 (224)
T ss_pred CCeeeeeee
Confidence 999988764
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-10 Score=101.49 Aligned_cols=141 Identities=11% Similarity=0.139 Sum_probs=96.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hh----HhhhCCCCCCeEEEeccCCCC------CCCccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PH----VVATAPVCEGIFHVGGDMFDA------IPKADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~~i~~~~~d~~~~------~p~~D~i~~~ 251 (350)
+.++.+|||+|||+|.++..++... +.-+++.+|+ +. +++.++...+|.++.+|+..+ .+.+|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 6788999999999999999999875 4558999998 54 555555456789999998753 2349999886
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
.. . .++...++.++++.|| |||+|+|.......... .+ -..+=.+|. ++|+++||+
T Consensus 210 va-~---pdq~~il~~na~r~LK-pGG~~vI~ika~~id~g-----------------~~-pe~~f~~ev-~~L~~~GF~ 265 (293)
T PTZ00146 210 VA-Q---PDQARIVALNAQYFLK-NGGHFIISIKANCIDST-----------------AK-PEVVFASEV-QKLKKEGLK 265 (293)
T ss_pred CC-C---cchHHHHHHHHHHhcc-CCCEEEEEEeccccccC-----------------CC-HHHHHHHHH-HHHHHcCCc
Confidence 63 1 2244566779999999 99999993211111100 00 001001444 889999999
Q ss_pred eeEEEEcCC---ceeEEEEe
Q 018775 332 RCKIISMPA---LYSIIEAY 348 (350)
Q Consensus 332 ~~~~~~~~~---~~~vi~~~ 348 (350)
.++.+.++. .+.++.++
T Consensus 266 ~~e~v~L~Py~~~h~~v~~~ 285 (293)
T PTZ00146 266 PKEQLTLEPFERDHAVVIGV 285 (293)
T ss_pred eEEEEecCCccCCcEEEEEE
Confidence 999988853 34555544
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.3e-11 Score=99.95 Aligned_cols=142 Identities=16% Similarity=0.161 Sum_probs=93.7
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC---CCC--CccEEEecchhccCC
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD---AIP--KADAVFMKWILHDWD 258 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~p--~~D~i~~~~vlh~~~ 258 (350)
+++.+|||||||+|.++..+++. ...+++++|. +++++.++. .+++++.+|+.+ +++ .||+|+++.++||++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 35679999999999999888765 3567899999 888887753 458888888865 233 499999999999987
Q ss_pred hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcc-----c--ccc--hhhhhhHhhhcCCcccCCHHHHHHHHHhcC
Q 018775 259 DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIF-----G--DMG--LVFDLVMFAHTTGGKERTEQEWMKLLEQGG 329 (350)
Q Consensus 259 ~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~-----~--~~~--~~~~~~~~~~~~~~~~~s~~e~~~ll~~aG 329 (350)
+. ..+|+++.+.++ + +++.- +....... . ... ..+...... ..+....+.+++.++++++|
T Consensus 90 d~--~~~l~e~~r~~~-~---~ii~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ll~~~G 159 (194)
T TIGR02081 90 NP--EEILDEMLRVGR-H---AIVSF---PNFGYWRVRWSILTKGRMPVTGELPYDWYN-TPNIHFCTIADFEDLCGELN 159 (194)
T ss_pred CH--HHHHHHHHHhCC-e---EEEEc---CChhHHHHHHHHHhCCccccCCCCCccccC-CCCcccCcHHHHHHHHHHCC
Confidence 64 467888877766 4 33321 11000000 0 000 000000000 01124568999999999999
Q ss_pred CceeEEEEc
Q 018775 330 FHRCKIISM 338 (350)
Q Consensus 330 f~~~~~~~~ 338 (350)
|++++....
T Consensus 160 f~v~~~~~~ 168 (194)
T TIGR02081 160 LRILDRAAF 168 (194)
T ss_pred CEEEEEEEe
Confidence 999887665
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-10 Score=103.98 Aligned_cols=136 Identities=19% Similarity=0.293 Sum_probs=100.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC--CccEEEecc--
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP--KADAVFMKW-- 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p--~~D~i~~~~-- 252 (350)
..+..+|||+|||+|..+..++..+|..+++++|+ +.+++.+++ ..+++++.+|++++.+ .||+|+++-
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 45678999999999999999999999999999999 787776654 3579999999988544 599999842
Q ss_pred ----hhccCC------------------hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhc
Q 018775 253 ----ILHDWD------------------DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHT 310 (350)
Q Consensus 253 ----vlh~~~------------------~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (350)
.++.+. -+....+++++.+.|+ |||.+++ +.
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk-~gG~l~~-e~------------------------- 238 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLK-PGGWLLL-EI------------------------- 238 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcc-cCCEEEE-EE-------------------------
Confidence 111111 1223578899999999 9999886 11
Q ss_pred CCcccCCHHHHHHHHHhcCCceeEEEE-cCCceeEEEEee
Q 018775 311 TGGKERTEQEWMKLLEQGGFHRCKIIS-MPALYSIIEAYP 349 (350)
Q Consensus 311 ~~~~~~s~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~ 349 (350)
+ ....+++.+++++.||..++++. +.+...++.+++
T Consensus 239 g---~~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~~ 275 (275)
T PRK09328 239 G---YDQGEAVRALLAAAGFADVETRKDLAGRDRVVLGRR 275 (275)
T ss_pred C---chHHHHHHHHHHhCCCceeEEecCCCCCceEEEEEC
Confidence 0 01246788999999999777754 455556666653
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-11 Score=101.95 Aligned_cols=98 Identities=26% Similarity=0.364 Sum_probs=79.2
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC--CccEEEecchhcc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP--KADAVFMKWILHD 256 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p--~~D~i~~~~vlh~ 256 (350)
...+|||+|||+|.++..+++++|+.+++.+|. +.+++.+++ .+.++++..|.++..+ .||+|+++-=+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 578999999999999999999999999999999 888887754 2239999999999554 4999999866665
Q ss_pred CCh---HHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 257 WDD---EACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 257 ~~~---~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
-.+ .-..++++++.+.|+ |||+++++-
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk-~~G~l~lv~ 140 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLK-PGGRLFLVI 140 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhcc-CCCEEEEEe
Confidence 332 246789999999999 999997643
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.6e-11 Score=96.73 Aligned_cols=140 Identities=16% Similarity=0.228 Sum_probs=97.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC---CCCC--ccEEEecchhccCC
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD---AIPK--ADAVFMKWILHDWD 258 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~p~--~D~i~~~~vlh~~~ 258 (350)
+++++|||+|||.|.+...|.+. .++++.++++ ++.+..+- ...++++++|+.+ .+|+ ||.|+++.+|.++.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence 57899999999999999888885 6899999998 55454443 3468899999998 3553 99999999999976
Q ss_pred hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhh-------------hcCCcccCCHHHHHHHH
Q 018775 259 DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFA-------------HTTGGKERTEQEWMKLL 325 (350)
Q Consensus 259 ~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~s~~e~~~ll 325 (350)
.++ ++|+++.++-+ +.+|.=+.... ....+.+...+ .+++-...|..+++++.
T Consensus 90 ~P~--~vL~EmlRVgr----~~IVsFPNFg~--------W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc 155 (193)
T PF07021_consen 90 RPD--EVLEEMLRVGR----RAIVSFPNFGH--------WRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLC 155 (193)
T ss_pred HHH--HHHHHHHHhcC----eEEEEecChHH--------HHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHH
Confidence 654 67888866644 55543221110 00111111000 12222344899999999
Q ss_pred HhcCCceeEEEEcCC
Q 018775 326 EQGGFHRCKIISMPA 340 (350)
Q Consensus 326 ~~aGf~~~~~~~~~~ 340 (350)
++.|+++++...+.+
T Consensus 156 ~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 156 RELGIRIEERVFLDG 170 (193)
T ss_pred HHCCCEEEEEEEEcC
Confidence 999999999888754
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-11 Score=104.33 Aligned_cols=98 Identities=17% Similarity=0.193 Sum_probs=77.5
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccC-CC-C--CC--CccEEEecc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDM-FD-A--IP--KADAVFMKW 252 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~-~~-~--~p--~~D~i~~~~ 252 (350)
+..+|||||||+|..+..+++.+|+.+++++|. +++++.+++ ..+++++.+|+ .. + ++ .||+|++.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 578999999999999999999999999999999 888887754 35799999998 43 3 43 399999865
Q ss_pred hhccC------ChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 253 ILHDW------DDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 253 vlh~~------~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
..... .......+|++++++|+ |||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lk-pgG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLK-PGGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcC-CCCEEEEEc
Confidence 43211 11123578999999999 999999754
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-10 Score=101.87 Aligned_cols=120 Identities=20% Similarity=0.314 Sum_probs=87.2
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCCCccEEEecchhcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIPKADAVFMKWILHD 256 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p~~D~i~~~~vlh~ 256 (350)
.++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ .+++.+..+|. .||+|+++..
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~--- 188 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANIL--- 188 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCc---
Confidence 4678999999999999988776544 36999999 888887764 13344333322 5999988533
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEE
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII 336 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~ 336 (350)
.+....+++++.++|+ |||++++..... ...+++.+.+++.||+++++.
T Consensus 189 --~~~~~~l~~~~~~~Lk-pgG~lilsgi~~----------------------------~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 189 --ANPLLELAPDLARLLK-PGGRLILSGILE----------------------------EQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred --HHHHHHHHHHHHHhcC-CCcEEEEEECcH----------------------------hhHHHHHHHHHHCCCEEEEEE
Confidence 2335678999999999 999999753211 025778899999999999887
Q ss_pred EcCCceeE
Q 018775 337 SMPALYSI 344 (350)
Q Consensus 337 ~~~~~~~v 344 (350)
..++-..+
T Consensus 238 ~~~~W~~~ 245 (250)
T PRK00517 238 ERGEWVAL 245 (250)
T ss_pred EeCCEEEE
Confidence 76654444
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-10 Score=101.84 Aligned_cols=121 Identities=19% Similarity=0.333 Sum_probs=90.6
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCC--CccEEEecc---
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIP--KADAVFMKW--- 252 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p--~~D~i~~~~--- 252 (350)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|++++.+ .||+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457999999999999999999999999999999 888887764 3579999999987554 499999851
Q ss_pred ----------hhccCCh----------HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCC
Q 018775 253 ----------ILHDWDD----------EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTG 312 (350)
Q Consensus 253 ----------vlh~~~~----------~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (350)
.+++.+. +....+++++.+.|+ |||++++ |.
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~-~gG~l~~-e~--------------------------- 251 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLN-ENGVLVV-EV--------------------------- 251 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcC-CCCEEEE-EE---------------------------
Confidence 1122111 123678999999999 9999874 21
Q ss_pred cccCCHHHHHHHHHhcCCceeEEEE
Q 018775 313 GKERTEQEWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 313 ~~~~s~~e~~~ll~~aGf~~~~~~~ 337 (350)
+. +.++..+++.+.||.......
T Consensus 252 g~--~~~~v~~~~~~~~~~~~~~~~ 274 (284)
T TIGR03533 252 GN--SMEALEEAYPDVPFTWLEFEN 274 (284)
T ss_pred Cc--CHHHHHHHHHhCCCceeeecC
Confidence 11 235677778888887655443
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.1e-10 Score=99.10 Aligned_cols=142 Identities=17% Similarity=0.208 Sum_probs=104.5
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC-Cc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP-KA 245 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p-~~ 245 (350)
+-+++.++ .....+|||+|||.|.+++.+++.+|+.+++.+|. ..+++.+++ ..+..+...|..++.+ .|
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 45677777 55555999999999999999999999999999998 777777765 2233577788888655 59
Q ss_pred cEEEecchhcc---CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH
Q 018775 246 DAVFMKWILHD---WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM 322 (350)
Q Consensus 246 D~i~~~~vlh~---~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~ 322 (350)
|.|+++-=+|. ....-..++++.+++.|+ +||.|.|+-. + ...-..-++
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~-~gGeL~iVan-----~----------------------~l~y~~~L~ 277 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLK-PGGELWIVAN-----R----------------------HLPYEKKLK 277 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhc-cCCEEEEEEc-----C----------------------CCChHHHHH
Confidence 99999887775 223334589999999999 9999998654 1 111122233
Q ss_pred HHHHhcCCceeEEEEcCCceeEEEEeeC
Q 018775 323 KLLEQGGFHRCKIISMPALYSIIEAYPQ 350 (350)
Q Consensus 323 ~ll~~aGf~~~~~~~~~~~~~vi~~~~~ 350 (350)
+. |..+++..-.+.+.|+.++|.
T Consensus 278 ~~-----Fg~v~~la~~~gf~Vl~a~k~ 300 (300)
T COG2813 278 EL-----FGNVEVLAKNGGFKVLRAKKA 300 (300)
T ss_pred Hh-----cCCEEEEEeCCCEEEEEEecC
Confidence 33 455677777777888888774
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.3e-10 Score=101.23 Aligned_cols=132 Identities=16% Similarity=0.224 Sum_probs=97.6
Q ss_pred ceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCC--CccEEEec------
Q 018775 188 QSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIP--KADAVFMK------ 251 (350)
Q Consensus 188 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p--~~D~i~~~------ 251 (350)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.+++ .++++++.+|++++.+ .||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6999999999999999999999999999999 888877764 3569999999998654 49999985
Q ss_pred -------chhccCCh----------HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcc
Q 018775 252 -------WILHDWDD----------EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGK 314 (350)
Q Consensus 252 -------~vlh~~~~----------~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (350)
.+++|-|. .....+++++.+.|+ |||.+++ |...
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~-~gG~l~~-e~g~--------------------------- 246 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLK-PNGFLVC-EIGN--------------------------- 246 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhcc-CCCEEEE-EECc---------------------------
Confidence 23333221 245678999999999 9998764 2110
Q ss_pred cCCHHHHHHHHH-hcCCceeEEEE-cCCceeEEEEee
Q 018775 315 ERTEQEWMKLLE-QGGFHRCKIIS-MPALYSIIEAYP 349 (350)
Q Consensus 315 ~~s~~e~~~ll~-~aGf~~~~~~~-~~~~~~vi~~~~ 349 (350)
...+...+++. +.||..++++. +.+...++.+++
T Consensus 247 -~q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~~~ 282 (284)
T TIGR00536 247 -WQQKSLKELLRIKFTWYDVENGRDLNGKERVVLGFY 282 (284)
T ss_pred -cHHHHHHHHHHhcCCCceeEEecCCCCCceEEEEEe
Confidence 01456667777 46898777755 355555666654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.8e-11 Score=100.28 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=77.0
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCC--
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIP-- 243 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p-- 243 (350)
.+++.+. ..++.+|||||||+|..+..+++..+ ..+++++|. +++++.+++ .++++++.+|..+..+
T Consensus 63 ~~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~ 140 (205)
T PRK13944 63 MMCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH 140 (205)
T ss_pred HHHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence 3445555 56778999999999999999988764 568999999 888876654 2469999999987332
Q ss_pred -CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 244 -KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
+||+|++...+++++ +++.+.|+ |||+|++.
T Consensus 141 ~~fD~Ii~~~~~~~~~--------~~l~~~L~-~gG~lvi~ 172 (205)
T PRK13944 141 APFDAIIVTAAASTIP--------SALVRQLK-DGGVLVIP 172 (205)
T ss_pred CCccEEEEccCcchhh--------HHHHHhcC-cCcEEEEE
Confidence 599999998887654 35778899 99999874
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.9e-10 Score=94.58 Aligned_cols=134 Identities=19% Similarity=0.271 Sum_probs=96.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCC-eEEEeccCCCCCC--CccEEEecch
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEG-IFHVGGDMFDAIP--KADAVFMKWI 253 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~-i~~~~~d~~~~~p--~~D~i~~~~v 253 (350)
.++.+|||+|||+|.++..+++. +.+++++|. +++++.+++ .++ +.++.+|+.++++ .||+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45779999999999999999987 578999999 888877643 222 8899999988544 4999998644
Q ss_pred hccCC-------------------hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcc
Q 018775 254 LHDWD-------------------DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGK 314 (350)
Q Consensus 254 lh~~~-------------------~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (350)
+...+ ......+++++.++|+ |||.+++..... .
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk-~gG~~~~~~~~~----------------------~---- 152 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLK-PGGRILLLQSSL----------------------T---- 152 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcC-CCeEEEEEEccc----------------------C----
Confidence 32211 2234578999999999 999988753100 1
Q ss_pred cCCHHHHHHHHHhcCCceeEEEEcC--C-ceeEEEEee
Q 018775 315 ERTEQEWMKLLEQGGFHRCKIISMP--A-LYSIIEAYP 349 (350)
Q Consensus 315 ~~s~~e~~~ll~~aGf~~~~~~~~~--~-~~~vi~~~~ 349 (350)
..+++.++++++||++..+.... . ...+++++|
T Consensus 153 --~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T PRK14968 153 --GEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELVK 188 (188)
T ss_pred --CHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEeC
Confidence 14678889999999988765442 2 233555544
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.5e-11 Score=98.83 Aligned_cols=130 Identities=17% Similarity=0.209 Sum_probs=88.2
Q ss_pred EEecc-hhHhhhCCC---------CCCeEEEeccCCC-CCCC--ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceE
Q 018775 214 INFDL-PHVVATAPV---------CEGIFHVGGDMFD-AIPK--ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKL 280 (350)
Q Consensus 214 ~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~-~~p~--~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~l 280 (350)
+++|. ++|++.|++ ..+|+++.+|+.+ |+++ ||+|++.+++|++++. .++|++++++|+ |||++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLk-pGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLK-PGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcC-cCeEE
Confidence 36788 888887642 2469999999998 7653 9999999999998764 588999999999 99999
Q ss_pred EEEeeeecCCCCCccccc----------chh----hhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcCCc-eeEE
Q 018775 281 VLVEIVVQEDGNNIFGDM----------GLV----FDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPAL-YSII 345 (350)
Q Consensus 281 li~e~~~~~~~~~~~~~~----------~~~----~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~~-~~vi 345 (350)
++.|...++......... ..+ .....+...- ....+.+++.++|+++||+.++.+..... ..+.
T Consensus 78 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si-~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~ 156 (160)
T PLN02232 78 SILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSI-NGYLTGEELETLALEAGFSSACHYEISGGFMGNL 156 (160)
T ss_pred EEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHH-HHCcCHHHHHHHHHHcCCCcceEEECcchHhHee
Confidence 999987654321100000 000 0000000000 12347899999999999999988877543 3344
Q ss_pred EE
Q 018775 346 EA 347 (350)
Q Consensus 346 ~~ 347 (350)
.+
T Consensus 157 ~~ 158 (160)
T PLN02232 157 VA 158 (160)
T ss_pred Ee
Confidence 43
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.8e-10 Score=92.32 Aligned_cols=99 Identities=22% Similarity=0.277 Sum_probs=82.0
Q ss_pred HHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC---CCCCcc
Q 018775 177 VSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD---AIPKAD 246 (350)
Q Consensus 177 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~---~~p~~D 246 (350)
+.++. ..++.+++|||||+|..++.++..+|..+++.+|. +++++..++ .++++++.+|.-+ +.|.+|
T Consensus 27 ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 27 LSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 44455 78899999999999999999999999999999998 777665443 6899999999987 344699
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
.|+....-. ...+|+.+...|+ |||+|++.-
T Consensus 105 aiFIGGg~~------i~~ile~~~~~l~-~ggrlV~na 135 (187)
T COG2242 105 AIFIGGGGN------IEEILEAAWERLK-PGGRLVANA 135 (187)
T ss_pred EEEECCCCC------HHHHHHHHHHHcC-cCCeEEEEe
Confidence 999977532 4578999999999 999998643
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.1e-10 Score=102.73 Aligned_cols=134 Identities=17% Similarity=0.211 Sum_probs=98.4
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC---CccEEEecchhc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP---KADAVFMKWILH 255 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p---~~D~i~~~~vlh 255 (350)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+++ ..+ .||+|+++---.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 456999999999999999999999999999999 889887764 4579999999987 332 499999953110
Q ss_pred c-----C------------------ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCC
Q 018775 256 D-----W------------------DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTG 312 (350)
Q Consensus 256 ~-----~------------------~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (350)
. . +.+-...+++.+.+.|+ |||.+++ |.-.
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lk-pgG~lil-EiG~------------------------- 383 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLA-EGGFLLL-EHGF------------------------- 383 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcC-CCcEEEE-EECc-------------------------
Confidence 0 0 00113477788888999 9998763 2111
Q ss_pred cccCCHHHHHHHHHhcCCceeEEEE-cCCceeEEEEee
Q 018775 313 GKERTEQEWMKLLEQGGFHRCKIIS-MPALYSIIEAYP 349 (350)
Q Consensus 313 ~~~~s~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~ 349 (350)
...+.+.+++++.||..++++. ..+...++.+++
T Consensus 384 ---~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~ 418 (423)
T PRK14966 384 ---DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKY 418 (423)
T ss_pred ---cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEE
Confidence 1257888899999999888766 456666766664
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.2e-10 Score=97.78 Aligned_cols=137 Identities=14% Similarity=0.152 Sum_probs=104.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-C--CC--CccEEEe
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-A--IP--KADAVFM 250 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~--~p--~~D~i~~ 250 (350)
.....+|||+|||+|..+..++++.++++++++++ +.+.+.|++ .+||++++.|+.+ . .+ .||+|+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 34589999999999999999999999999999999 888888875 6899999999997 2 22 3999999
Q ss_pred cchhccCCh----------------HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcc
Q 018775 251 KWILHDWDD----------------EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGK 314 (350)
Q Consensus 251 ~~vlh~~~~----------------~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (350)
+-=.+.-+. -...++++.+.+.|| |||++.++-. .
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk-~~G~l~~V~r---~------------------------- 172 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLK-PGGRLAFVHR---P------------------------- 172 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHcc-CCCEEEEEec---H-------------------------
Confidence 643332221 135688999999999 9999986431 1
Q ss_pred cCCHHHHHHHHHhcCCceeEEEEcC---C---ceeEEEEeeC
Q 018775 315 ERTEQEWMKLLEQGGFHRCKIISMP---A---LYSIIEAYPQ 350 (350)
Q Consensus 315 ~~s~~e~~~ll~~aGf~~~~~~~~~---~---~~~vi~~~~~ 350 (350)
-...+|.+++.+.+|...++..+. + ..-+++++|+
T Consensus 173 -erl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~ 213 (248)
T COG4123 173 -ERLAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIKG 213 (248)
T ss_pred -HHHHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEecC
Confidence 125788889999999887775552 2 2447777764
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.8e-10 Score=100.27 Aligned_cols=95 Identities=19% Similarity=0.351 Sum_probs=76.1
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCC--CccEEEecc----
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIP--KADAVFMKW---- 252 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p--~~D~i~~~~---- 252 (350)
..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+++..+ .||+|+++-
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 36899999999999999999999999999999 888887764 3579999999987544 499999851
Q ss_pred ---------hhccCCh----------HHHHHHHHHHHhhCCCCCceEEE
Q 018775 253 ---------ILHDWDD----------EACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 253 ---------vlh~~~~----------~~~~~~L~~~~~~L~~pgG~lli 282 (350)
.+++.|. +....+++++.+.|+ |||++++
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~-pgG~l~~ 261 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLT-EDGVLVV 261 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcC-CCCEEEE
Confidence 1122221 224688999999999 9999875
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.2e-09 Score=93.39 Aligned_cols=155 Identities=17% Similarity=0.225 Sum_probs=115.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCC--CcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC------CCCccEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPH--IKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA------IPKADAV 248 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~------~p~~D~i 248 (350)
....+||||.||+|.+....+..+|. .++...|. +..++..++ .+-++|.++|.++. .|.++++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46889999999999999999999997 68888898 766666543 45569999999982 2458999
Q ss_pred EecchhccCChHH-HHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCc-----ccCCHHHHH
Q 018775 249 FMKWILHDWDDEA-CVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGG-----KERTEQEWM 322 (350)
Q Consensus 249 ~~~~vlh~~~~~~-~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~s~~e~~ 322 (350)
+.+.....++|++ +...|+-+++++. |||.++-...-..+... +....+..+-. | +.||..|+.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~-pgG~lIyTgQPwHPQle--------~IAr~LtsHr~-g~~WvMRrRsq~EmD 283 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALE-PGGYLIYTGQPWHPQLE--------MIARVLTSHRD-GKAWVMRRRSQAEMD 283 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhC-CCcEEEEcCCCCCcchH--------HHHHHHhcccC-CCceEEEecCHHHHH
Confidence 9999999999987 4457999999999 99999865533333221 11111111111 2 457999999
Q ss_pred HHHHhcCCceeEEEEc-CCceeEEEEee
Q 018775 323 KLLEQGGFHRCKIISM-PALYSIIEAYP 349 (350)
Q Consensus 323 ~ll~~aGf~~~~~~~~-~~~~~vi~~~~ 349 (350)
++++++||+.++..-- -+-+.|..|+|
T Consensus 284 ~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 284 QLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHcCCchhhheeccCCceEEEeecC
Confidence 9999999997766543 35688888765
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.5e-10 Score=102.25 Aligned_cols=89 Identities=15% Similarity=0.215 Sum_probs=73.2
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCC---cEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCC--CccEEEecchhccC
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHI---KGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIP--KADAVFMKWILHDW 257 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~ 257 (350)
...+|||||||+|.++..+++.++.. +++++|+ +.+++.|++ ..++++..+|..+ |++ .||+|++....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~--- 161 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP--- 161 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC---
Confidence 45789999999999999999887743 6899999 889988765 4678999999988 765 39999975431
Q ss_pred ChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 258 DDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 258 ~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
..+++++++|+ |||+++++.
T Consensus 162 ------~~~~e~~rvLk-pgG~li~~~ 181 (272)
T PRK11088 162 ------CKAEELARVVK-PGGIVITVT 181 (272)
T ss_pred ------CCHHHHHhhcc-CCCEEEEEe
Confidence 23678999999 999999875
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.4e-10 Score=97.37 Aligned_cols=99 Identities=14% Similarity=0.169 Sum_probs=77.8
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC---
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI--- 242 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~--- 242 (350)
..+++.++ ..++.+|||||||+|..+..+++.. ++.+++++|. +++++.+++ .++++++.+|.....
T Consensus 66 ~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~ 143 (212)
T PRK13942 66 AIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN 143 (212)
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence 44555666 6788999999999999999888874 4578999999 888887764 357999999998732
Q ss_pred CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 243 PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 243 p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
.+||+|++....++++ +.+.+.|+ |||++++.
T Consensus 144 ~~fD~I~~~~~~~~~~--------~~l~~~Lk-pgG~lvi~ 175 (212)
T PRK13942 144 APYDRIYVTAAGPDIP--------KPLIEQLK-DGGIMVIP 175 (212)
T ss_pred CCcCEEEECCCcccch--------HHHHHhhC-CCcEEEEE
Confidence 2599999987665533 35677899 99999884
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-10 Score=98.96 Aligned_cols=97 Identities=19% Similarity=0.341 Sum_probs=76.3
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C---CC--CccEEEecc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A---IP--KADAVFMKW 252 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~---~p--~~D~i~~~~ 252 (350)
...+|||||||+|.++..+++++|+.+++++|+ +.+++.+++ ..+++++.+|+.+ + .+ .+|.|++.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 467999999999999999999999999999999 888877653 3589999999975 2 33 388888764
Q ss_pred hhccCChHH-------HHHHHHHHHhhCCCCCceEEEEe
Q 018775 253 ILHDWDDEA-------CVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 253 vlh~~~~~~-------~~~~L~~~~~~L~~pgG~lli~e 284 (350)
-.+ |+... ...++++++++|+ |||.|++..
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~Lk-pgG~l~~~t 132 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLK-KGGVIHFKT 132 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhC-CCCEEEEEe
Confidence 322 32211 1468999999999 999998755
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.1e-10 Score=94.50 Aligned_cols=97 Identities=22% Similarity=0.283 Sum_probs=76.6
Q ss_pred HhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-C-CC
Q 018775 178 SHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-I-PK 244 (350)
Q Consensus 178 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~-p~ 244 (350)
..++ ..++.+|||+|||+|.++..+++.. +..+++++|. +.+++.+++ .++++++.+|..+ + . +.
T Consensus 34 ~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 34 SKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 3445 6788999999999999999998764 6678999999 888886653 3578999999876 2 2 35
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
||+|++.. +..+...+++.+.+.|+ |||++++
T Consensus 112 ~D~V~~~~-----~~~~~~~~l~~~~~~Lk-pgG~lv~ 143 (198)
T PRK00377 112 FDRIFIGG-----GSEKLKEIISASWEIIK-KGGRIVI 143 (198)
T ss_pred CCEEEECC-----CcccHHHHHHHHHHHcC-CCcEEEE
Confidence 99999853 12345678999999999 9999985
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1e-09 Score=94.16 Aligned_cols=96 Identities=21% Similarity=0.257 Sum_probs=74.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecchhHhhhCCCCCCeEEEeccCCCC---------CC--CccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDLPHVVATAPVCEGIFHVGGDMFDA---------IP--KADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~---------~p--~~D~i~~~ 251 (350)
++++.+|||||||+|.++..+++.. +..+++++|+.++. ...+++++.+|+.++ .+ .+|+|++.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~ 124 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSD 124 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecC
Confidence 4567899999999999999999886 45689999984432 234589999999883 32 49999997
Q ss_pred chhccCChHH---------HHHHHHHHHhhCCCCCceEEEEe
Q 018775 252 WILHDWDDEA---------CVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 252 ~vlh~~~~~~---------~~~~L~~~~~~L~~pgG~lli~e 284 (350)
...|..+.+. ...+|+.++++|+ |||++++..
T Consensus 125 ~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lk-pGG~~vi~~ 165 (209)
T PRK11188 125 MAPNMSGTPAVDIPRAMYLVELALDMCRDVLA-PGGSFVVKV 165 (209)
T ss_pred CCCccCCChHHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEE
Confidence 7666543321 2468999999999 999999854
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-09 Score=96.04 Aligned_cols=123 Identities=13% Similarity=0.113 Sum_probs=91.0
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCC-CccEEEecchhccCChHH
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIP-KADAVFMKWILHDWDDEA 261 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh~~~~~~ 261 (350)
...+|||+|||+|.++..++++.+..+++++|+ +.+++.+++ ..+++++.+|+.+ ..+ .||+|+++--+++.+..+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence 356999999999999999988877789999999 899988775 4578999999998 323 499999987776654332
Q ss_pred ------------------HHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHH
Q 018775 262 ------------------CVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMK 323 (350)
Q Consensus 262 ------------------~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ 323 (350)
..++++.....|+ |+|.+++. ....+. + ....+.+++++
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~-p~G~~~~~---yss~~~-------------y------~~sl~~~~y~~ 200 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIV-PTGSAGFA---YSGRPY-------------Y------DGTMKSNKYLK 200 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheec-CCceEEEE---Eecccc-------------c------cccCCHHHHHH
Confidence 1356677778888 88876654 111110 0 11224799999
Q ss_pred HHHhcCCc
Q 018775 324 LLEQGGFH 331 (350)
Q Consensus 324 ll~~aGf~ 331 (350)
+++++||.
T Consensus 201 ~l~~~g~~ 208 (279)
T PHA03411 201 WSKQTGLV 208 (279)
T ss_pred HHHhcCcE
Confidence 99999985
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.2e-10 Score=96.16 Aligned_cols=99 Identities=12% Similarity=0.160 Sum_probs=77.2
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC---
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI--- 242 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~--- 242 (350)
..+++.++ ..++.+|||||||+|.++..+++..+ +.+++++|. +++++.+++ .++++++.+|..+..
T Consensus 67 ~~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~ 144 (215)
T TIGR00080 67 AMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPL 144 (215)
T ss_pred HHHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCccc
Confidence 34555555 67889999999999999999998854 467999998 888887764 357999999998732
Q ss_pred CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 243 PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 243 p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
.+||+|++.....+. .+.+.+.|+ |||++++.
T Consensus 145 ~~fD~Ii~~~~~~~~--------~~~~~~~L~-~gG~lv~~ 176 (215)
T TIGR00080 145 APYDRIYVTAAGPKI--------PEALIDQLK-EGGILVMP 176 (215)
T ss_pred CCCCEEEEcCCcccc--------cHHHHHhcC-cCcEEEEE
Confidence 259999987655443 446788899 99999874
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.4e-10 Score=89.20 Aligned_cols=123 Identities=21% Similarity=0.215 Sum_probs=94.0
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC-C-C-CccEEEecchhc
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA-I-P-KADAVFMKWILH 255 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~-~-p-~~D~i~~~~vlh 255 (350)
..+|||+|||.|.++..|++..-....+++|. +.+++.|+. .+.|+|.+.|+.+| + + .||+|+=..++.
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 34999999999999999999743445788888 777776653 56699999999994 2 3 388887655544
Q ss_pred cC------ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcC
Q 018775 256 DW------DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGG 329 (350)
Q Consensus 256 ~~------~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aG 329 (350)
.+ +.......+..+.+.|+ |||.++|.. + -+|.+|+.+.++.-|
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~-~~gifvItS-------------------------C----N~T~dELv~~f~~~~ 197 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLS-PGGIFVITS-------------------------C----NFTKDELVEEFENFN 197 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccC-CCcEEEEEe-------------------------c----CccHHHHHHHHhcCC
Confidence 33 22333567888999999 999998732 2 236899999999999
Q ss_pred CceeEEEEcC
Q 018775 330 FHRCKIISMP 339 (350)
Q Consensus 330 f~~~~~~~~~ 339 (350)
|.....+|.|
T Consensus 198 f~~~~tvp~p 207 (227)
T KOG1271|consen 198 FEYLSTVPTP 207 (227)
T ss_pred eEEEEeeccc
Confidence 9998888876
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-09 Score=97.88 Aligned_cols=118 Identities=21% Similarity=0.215 Sum_probs=84.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCC-CCccEEEecchhc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAI-PKADAVFMKWILH 255 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~-p~~D~i~~~~vlh 255 (350)
.++.+|||||||+|.++..+++. ...+++++|+ +.+++.+++ ..++.+...+..... ..||+|+++...+
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE 236 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence 35689999999999999887764 4458999999 888887764 345677766644322 3599999865433
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEE
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKI 335 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~ 335 (350)
....++++++++|+ |||++++..... ...+++.+.+++. |+.+++
T Consensus 237 -----~l~~ll~~~~~~Lk-pgG~li~sgi~~----------------------------~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 237 -----VIKELYPQFSRLVK-PGGWLILSGILE----------------------------TQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred -----HHHHHHHHHHHHcC-CCcEEEEEeCcH----------------------------hHHHHHHHHHHcc-CceeeE
Confidence 34678999999999 999998754211 0146667777765 877766
Q ss_pred EEc
Q 018775 336 ISM 338 (350)
Q Consensus 336 ~~~ 338 (350)
...
T Consensus 282 ~~~ 284 (288)
T TIGR00406 282 RQR 284 (288)
T ss_pred ecc
Confidence 543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-09 Score=91.89 Aligned_cols=101 Identities=12% Similarity=0.066 Sum_probs=86.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------------------CCCeEEEeccCCC-CC-
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------------------CEGIFHVGGDMFD-AI- 242 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~i~~~~~d~~~-~~- 242 (350)
..++.+||+.|||.|.-+..|+.. +.+++++|+ +..++.+.+ ..+|++.++|+++ +.
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~ 118 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence 345689999999999999999997 567999999 777776411 4589999999999 42
Q ss_pred ----CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 243 ----PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 243 ----p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
..||+|+=..+|++++++...+..+++.++|+ |||+++++....
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~-pgg~llll~~~~ 166 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCS-NNTQILLLVMEH 166 (226)
T ss_pred ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhC-CCcEEEEEEEec
Confidence 24999999999999999999999999999999 999999987644
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.6e-10 Score=94.51 Aligned_cols=133 Identities=17% Similarity=0.188 Sum_probs=100.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC---C---------------CCCeEEEeccCCC-CCC
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP---V---------------CEGIFHVGGDMFD-AIP 243 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~---------------~~~i~~~~~d~~~-~~p 243 (350)
..+..+||..|||.|.-+..|+++ +.+++++|+ +.+++.+. . ..+|++.++|+++ +..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 567789999999999999999997 568999999 88887651 0 4578999999999 322
Q ss_pred ---CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHH
Q 018775 244 ---KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQE 320 (350)
Q Consensus 244 ---~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e 320 (350)
.||+|+=..+|+.++++...+..+++.++|+ |||+++++....+..... .+ -...+.++
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~-p~g~~lLi~l~~~~~~~~----------------GP-Pf~v~~~e 174 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLK-PGGRGLLITLEYPQGEME----------------GP-PFSVTEEE 174 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEE-EEEEEEEEEEES-CSCSS----------------SS-S----HHH
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhC-CCCcEEEEEEEcCCcCCC----------------Cc-CCCCCHHH
Confidence 4999999999999999999999999999999 999966655443332210 01 12336899
Q ss_pred HHHHHHhcCCceeEEEE
Q 018775 321 WMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 321 ~~~ll~~aGf~~~~~~~ 337 (350)
+.++|. .+|++.....
T Consensus 175 v~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 175 VRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHT-TTEEEEEEEE
T ss_pred HHHHhc-CCcEEEEEec
Confidence 999998 7888776644
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.8e-09 Score=104.47 Aligned_cols=132 Identities=18% Similarity=0.313 Sum_probs=96.7
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCC--CccEEEec--c-
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIP--KADAVFMK--W- 252 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p--~~D~i~~~--~- 252 (350)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+++..+ .||+|+++ +
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 356899999999999999999999999999999 888887764 3589999999987543 49999983 1
Q ss_pred -----------hhccCCh----------HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcC
Q 018775 253 -----------ILHDWDD----------EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTT 311 (350)
Q Consensus 253 -----------vlh~~~~----------~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (350)
++.+.|. +....+++++.+.|+ |||.+++ |.-.
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~-~gG~l~l-Eig~------------------------ 271 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLK-PNGKIIL-EIGF------------------------ 271 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhcc-CCCEEEE-EECC------------------------
Confidence 1111110 123567889999999 9999875 3110
Q ss_pred CcccCCHHHHHHHHHhcCCceeEEEE-cCCceeEEEE
Q 018775 312 GGKERTEQEWMKLLEQGGFHRCKIIS-MPALYSIIEA 347 (350)
Q Consensus 312 ~~~~~s~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~ 347 (350)
...+.+.+++.+.||..++++. +.+...++.+
T Consensus 272 ----~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~ 304 (506)
T PRK01544 272 ----KQEEAVTQIFLDHGYNIESVYKDLQGHSRVILI 304 (506)
T ss_pred ----chHHHHHHHHHhcCCCceEEEecCCCCceEEEe
Confidence 0256788888999998887765 4454445444
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=5e-09 Score=91.00 Aligned_cols=102 Identities=15% Similarity=0.110 Sum_probs=74.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCCC--CccEEEecchhc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAIP--KADAVFMKWILH 255 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~p--~~D~i~~~~vlh 255 (350)
..++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|+++--.+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 456789999999999999998875 3348899999 788876553 2358889999987433 499999863111
Q ss_pred cCCh-------------------HHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 256 DWDD-------------------EACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 256 ~~~~-------------------~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
.-+. .....+++++++.|+ |||++++.....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk-~gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLA-PGGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcC-CCcEEEEEEecc
Confidence 1000 114568899999999 999999865444
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-09 Score=91.97 Aligned_cols=101 Identities=23% Similarity=0.302 Sum_probs=77.8
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC---CC-CC
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD---AI-PK 244 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~---~~-p~ 244 (350)
+++.++ ..++.+|||+|||+|.++..+++..|+.+++++|+ +.+++.+++ .++++++.+|..+ .. +.
T Consensus 32 l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (196)
T PRK07402 32 LISQLR--LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA 109 (196)
T ss_pred HHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence 344455 56788999999999999999998888899999999 888887654 3579999998865 22 23
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
+|.+++.. ......+++++++.|+ |||++++...
T Consensus 110 ~d~v~~~~------~~~~~~~l~~~~~~Lk-pgG~li~~~~ 143 (196)
T PRK07402 110 PDRVCIEG------GRPIKEILQAVWQYLK-PGGRLVATAS 143 (196)
T ss_pred CCEEEEEC------CcCHHHHHHHHHHhcC-CCeEEEEEee
Confidence 67665421 2234688999999999 9999998653
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=100.58 Aligned_cols=107 Identities=16% Similarity=0.284 Sum_probs=80.8
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC---CCC--
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD---AIP-- 243 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~---~~p-- 243 (350)
+++.+. ...+..+||||||+|.++..+++++|+..++++|+ +.+++.+.+ ..++.++.+|+.. .++
T Consensus 114 ~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 114 FLDFIS--KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHhc--CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 444444 34567999999999999999999999999999999 777766543 3579999999854 344
Q ss_pred CccEEEecchhccCChHH-----HHHHHHHHHhhCCCCCceEEEEeee
Q 018775 244 KADAVFMKWILHDWDDEA-----CVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~-----~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
.+|.|++++-. .|+... ...+|+.++++|+ |||.+.+....
T Consensus 192 s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvLk-pGG~l~l~TD~ 237 (390)
T PRK14121 192 SVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVLK-PGGTLELRTDS 237 (390)
T ss_pred ceeEEEEeCCC-CccccchhhccHHHHHHHHHHHcC-CCcEEEEEEEC
Confidence 39999875432 233221 1478999999999 99999986543
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.9e-10 Score=98.87 Aligned_cols=97 Identities=20% Similarity=0.304 Sum_probs=77.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC---CCC-CccEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD---AIP-KADAVFMKW 252 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~---~~p-~~D~i~~~~ 252 (350)
+++.+|||||||+|.++..+++.+|+.+++++|+ |++++.+++ .++++++.+|..+ ..+ .||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 4567999999999999999999999999999999 999987764 3689999999865 233 599999752
Q ss_pred hhcc--CChH-HHHHHHHHHHhhCCCCCceEEEE
Q 018775 253 ILHD--WDDE-ACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 253 vlh~--~~~~-~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
.+. .+.. ....+++++++.|+ |||.+++.
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~-pgGvlvin 176 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALS-SDGIFVVN 176 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcC-CCcEEEEE
Confidence 221 1211 13589999999999 99999884
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-09 Score=81.37 Aligned_cols=92 Identities=23% Similarity=0.334 Sum_probs=76.3
Q ss_pred eEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC------CCCCeEEEeccCCCCC----CCccEEEecchhccC
Q 018775 189 SLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP------VCEGIFHVGGDMFDAI----PKADAVFMKWILHDW 257 (350)
Q Consensus 189 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~i~~~~~d~~~~~----p~~D~i~~~~vlh~~ 257 (350)
+|+|+|||.|.++..+++ .+..+++++|. +..++.++ ...++++..+|+.+.. +++|+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 67889999998 66666554 1567999999999832 249999999999875
Q ss_pred ChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 258 DDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 258 ~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
.+....+++++.+.++ |||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~-~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLK-PGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcC-CCCEEEEE
Confidence 4456789999999999 99999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.3e-10 Score=87.31 Aligned_cols=96 Identities=20% Similarity=0.257 Sum_probs=75.6
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-C--CC--CccEEEecch
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-A--IP--KADAVFMKWI 253 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~--~p--~~D~i~~~~v 253 (350)
+.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. ..+++++.+|+.+ . .+ .||+|+++--
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 4689999999999999999998 789999999 888776654 4789999999987 3 33 4999999754
Q ss_pred hccCC------hHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 254 LHDWD------DEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 254 lh~~~------~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
.+... .+....+++++.+.|+ |||.++++-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~-~gG~~~~~~ 115 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLK-PGGVLVFIT 115 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcC-CCeEEEEEe
Confidence 44321 1234688999999999 999998764
|
... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.6e-09 Score=91.06 Aligned_cols=128 Identities=20% Similarity=0.289 Sum_probs=90.8
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---CCCeE----EEeccCCC-CC-CC
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---CEGIF----HVGGDMFD-AI-PK 244 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~----~~~~d~~~-~~-p~ 244 (350)
.+++.+. .++.+|||+|||+|-++++.++-. ..+++++|+ |.+++.+++ .+.+. ....+..+ +. .+
T Consensus 154 ~~Le~~~---~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~ 229 (300)
T COG2264 154 EALEKLL---KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGP 229 (300)
T ss_pred HHHHHhh---cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCc
Confidence 3444444 589999999999999999988864 347899999 888887765 33343 33333333 23 25
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKL 324 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~l 324 (350)
||+|+++ +|- +-...+...+++.++ |||++++.-... ...+...+.
T Consensus 230 ~DvIVAN-ILA----~vl~~La~~~~~~lk-pgg~lIlSGIl~----------------------------~q~~~V~~a 275 (300)
T COG2264 230 FDVIVAN-ILA----EVLVELAPDIKRLLK-PGGRLILSGILE----------------------------DQAESVAEA 275 (300)
T ss_pred ccEEEeh-hhH----HHHHHHHHHHHHHcC-CCceEEEEeehH----------------------------hHHHHHHHH
Confidence 9999974 343 345688999999999 999998743111 125777888
Q ss_pred HHhcCCceeEEEEcCC
Q 018775 325 LEQGGFHRCKIISMPA 340 (350)
Q Consensus 325 l~~aGf~~~~~~~~~~ 340 (350)
++++||.++++..-..
T Consensus 276 ~~~~gf~v~~~~~~~e 291 (300)
T COG2264 276 YEQAGFEVVEVLEREE 291 (300)
T ss_pred HHhCCCeEeEEEecCC
Confidence 9999999998877543
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-08 Score=90.08 Aligned_cols=122 Identities=17% Similarity=0.190 Sum_probs=88.8
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---CCCeEEEeccCCCCC-----CCccEEEecc--h-
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---CEGIFHVGGDMFDAI-----PKADAVFMKW--I- 253 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~~~-----p~~D~i~~~~--v- 253 (350)
+..+|||+|||+|.++..+++..|..+++++|. +.+++.+++ ...++++.+|+++.. ..||+|+++- +
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 346899999999999999999999999999999 889887775 234688999988732 2499999852 1
Q ss_pred ---hccCChH------------------HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCC
Q 018775 254 ---LHDWDDE------------------ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTG 312 (350)
Q Consensus 254 ---lh~~~~~------------------~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (350)
++..+++ -...+++.+.+.|+ |||++++.- . .
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~-~gG~l~l~~-~--~----------------------- 218 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLA-PGGHLLVET-S--E----------------------- 218 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcC-CCCEEEEEE-C--c-----------------------
Confidence 1111111 13478888999999 999988531 0 0
Q ss_pred cccCCHHHHHHHHHhcCCceeEEEE
Q 018775 313 GKERTEQEWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 313 ~~~~s~~e~~~ll~~aGf~~~~~~~ 337 (350)
. ..+++.+++++.||+...+.+
T Consensus 219 ~---~~~~v~~~l~~~g~~~~~~~~ 240 (251)
T TIGR03704 219 R---QAPLAVEAFARAGLIARVASS 240 (251)
T ss_pred c---hHHHHHHHHHHCCCCceeeEc
Confidence 0 145677888999998665444
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-09 Score=90.37 Aligned_cols=151 Identities=16% Similarity=0.241 Sum_probs=97.3
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--------------------------
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------------------------- 227 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------------------- 227 (350)
..++.+...+..+..+|||||-+|.++..+++.|....+.++|+ +..++.|++
T Consensus 47 ~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~ 126 (288)
T KOG2899|consen 47 PRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGP 126 (288)
T ss_pred hhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccc
Confidence 34444443456789999999999999999999998889999999 777776653
Q ss_pred ----------------------CCCeEEEeccCCC-CCCCccEEEec----chhccCChHHHHHHHHHHHhhCCCCCceE
Q 018775 228 ----------------------CEGIFHVGGDMFD-AIPKADAVFMK----WILHDWDDEACVKILKNCRQAIPDKSGKL 280 (350)
Q Consensus 228 ----------------------~~~i~~~~~d~~~-~~p~~D~i~~~----~vlh~~~~~~~~~~L~~~~~~L~~pgG~l 280 (350)
..++.+..-|+.. ..|.||+|+|- ||=-+|.|+-...+++++++.|. |||.|
T Consensus 127 is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~-pgGiL 205 (288)
T KOG2899|consen 127 ISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLH-PGGIL 205 (288)
T ss_pred ccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhC-cCcEE
Confidence 0112222334443 34569999883 44446889999999999999999 99998
Q ss_pred EEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhc--CCcee
Q 018775 281 VLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQG--GFHRC 333 (350)
Q Consensus 281 li~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~a--Gf~~~ 333 (350)
++ |+ .+-..+........-..+. .. .-...++.+..++.+. ||+.+
T Consensus 206 vv-EP----QpWksY~kaar~~e~~~~n-y~-~i~lkp~~f~~~l~q~~vgle~~ 253 (288)
T KOG2899|consen 206 VV-EP----QPWKSYKKAARRSEKLAAN-YF-KIFLKPEDFEDWLNQIVVGLESV 253 (288)
T ss_pred EE-cC----CchHHHHHHHHHHHHhhcC-cc-ceecCHHHHHhhhhhhhhheeee
Confidence 76 21 1111111111111111111 11 2344688888888887 45443
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.8e-08 Score=83.89 Aligned_cols=159 Identities=14% Similarity=0.185 Sum_probs=96.3
Q ss_pred hhhccCcchHHH----HHHHHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhh
Q 018775 149 DFASQSPQFNNL----FNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVAT 224 (350)
Q Consensus 149 ~~~~~~~~~~~~----~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 224 (350)
+.+.++|+.-.. |.+.+..|-....+.+++.+. ..++...|.|+|||.+.++..+.+ ..++.-+|+-..
T Consensus 32 ~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~-~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~--- 104 (219)
T PF05148_consen 32 KLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLK-KRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP--- 104 (219)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHC-TS-TTS-EEEES-TT-HHHHH--S------EEEEESS-S---
T ss_pred HHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH-hcCCCEEEEECCCchHHHHHhccc---CceEEEeeccCC---
Confidence 334445544333 444444454455677777776 234568999999999999966542 357888887221
Q ss_pred CCCCCCeEEEeccCCC-CCCC--ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchh
Q 018775 225 APVCEGIFHVGGDMFD-AIPK--ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLV 301 (350)
Q Consensus 225 a~~~~~i~~~~~d~~~-~~p~--~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~ 301 (350)
.+ .++..|+.+ |.++ .|+++++-.|-. .+...+|+++.|+|| |||.|.|.|...
T Consensus 105 ---n~--~Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK-~~G~L~IAEV~S-------------- 161 (219)
T PF05148_consen 105 ---NP--RVTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLK-PGGILKIAEVKS-------------- 161 (219)
T ss_dssp ---ST--TEEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEE-EEEEEEEEEEGG--------------
T ss_pred ---CC--CEEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheec-cCcEEEEEEecc--------------
Confidence 12 367799987 8764 999998877754 335689999999999 999999988433
Q ss_pred hhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 302 FDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 302 ~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
+.-+.+++.+.+++.||+....-.....+.+.+-+|
T Consensus 162 ------------Rf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 162 ------------RFENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp ------------G-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE
T ss_pred ------------cCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEE
Confidence 111478889999999999888655555566666554
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.6e-09 Score=88.57 Aligned_cols=104 Identities=20% Similarity=0.287 Sum_probs=86.6
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHH-HCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC-CC
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVK-SYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA-IP 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~-~p 243 (350)
..++...+ ..++.+|+|.|.|+|.++..|+. ..|.-+++.+|. ++..+.|++ .+++++..+|+.+. .+
T Consensus 84 ~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 84 GYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 45666666 88999999999999999999997 468789999998 887777764 57799999999983 33
Q ss_pred -CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 244 -KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
++|+|++ +++++. .+|.+++++|+ |||.+++.-+..
T Consensus 162 ~~vDav~L-----Dmp~PW--~~le~~~~~Lk-pgg~~~~y~P~v 198 (256)
T COG2519 162 EDVDAVFL-----DLPDPW--NVLEHVSDALK-PGGVVVVYSPTV 198 (256)
T ss_pred cccCEEEE-----cCCChH--HHHHHHHHHhC-CCcEEEEEcCCH
Confidence 5999998 777775 67999999999 999999866544
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=91.58 Aligned_cols=126 Identities=21% Similarity=0.189 Sum_probs=88.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCCCccEEEecchhc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIPKADAVFMKWILH 255 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p~~D~i~~~~vlh 255 (350)
.++.+|||||||+|-+++..++... .+++++|+ |.+++.+++ .+++.+. ...+ ....||+|+++- +
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~~~~~dlvvANI-~- 234 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLVEGKFDLVVANI-L- 234 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTCCS-EEEEEEES---
T ss_pred cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--EecccccccCCEEEECC-C-
Confidence 4567999999999999998877643 47899999 888877764 4566553 1111 224599999743 2
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEE
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKI 335 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~ 335 (350)
.+-...++..+.++|+ |||.+++.-.... ..+++.+.+++ ||..++.
T Consensus 235 ---~~vL~~l~~~~~~~l~-~~G~lIlSGIl~~----------------------------~~~~v~~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 235 ---ADVLLELAPDIASLLK-PGGYLILSGILEE----------------------------QEDEVIEAYKQ-GFELVEE 281 (295)
T ss_dssp ---HHHHHHHHHHCHHHEE-EEEEEEEEEEEGG----------------------------GHHHHHHHHHT-TEEEEEE
T ss_pred ---HHHHHHHHHHHHHhhC-CCCEEEEccccHH----------------------------HHHHHHHHHHC-CCEEEEE
Confidence 3356788899999999 9999997443221 25777888877 9999888
Q ss_pred EEcCCceeEEEEee
Q 018775 336 ISMPALYSIIEAYP 349 (350)
Q Consensus 336 ~~~~~~~~vi~~~~ 349 (350)
...++ ...+.++|
T Consensus 282 ~~~~~-W~~l~~~K 294 (295)
T PF06325_consen 282 REEGE-WVALVFKK 294 (295)
T ss_dssp EEETT-EEEEEEEE
T ss_pred EEECC-EEEEEEEe
Confidence 77554 55555555
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.6e-09 Score=89.99 Aligned_cols=97 Identities=11% Similarity=0.123 Sum_probs=74.0
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC---CC
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI---PK 244 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---p~ 244 (350)
.++..+. ..++.+|||||||+|..+..+++... +++++|. +++++.+++ ..+++++.+|..+.. .+
T Consensus 69 ~l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 144 (212)
T PRK00312 69 RMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAP 144 (212)
T ss_pred HHHHhcC--CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCC
Confidence 3444555 67789999999999999987777643 7888998 888776654 346999999987743 24
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
||+|++...++++ .+.+.+.|+ |||++++.-
T Consensus 145 fD~I~~~~~~~~~--------~~~l~~~L~-~gG~lv~~~ 175 (212)
T PRK00312 145 FDRILVTAAAPEI--------PRALLEQLK-EGGILVAPV 175 (212)
T ss_pred cCEEEEccCchhh--------hHHHHHhcC-CCcEEEEEE
Confidence 9999998766543 346788999 999998754
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.5e-09 Score=87.82 Aligned_cols=95 Identities=21% Similarity=0.291 Sum_probs=70.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecchhHhhhCCCCCCeEEEeccCCCC---------CC--CccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDLPHVVATAPVCEGIFHVGGDMFDA---------IP--KADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~---------~p--~~D~i~~~ 251 (350)
..++.+|||+|||+|.++..+++++ +..+++++|+.+.. ...+++++.+|+.++ .+ .+|+|++.
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 4678899999999999999999886 56789999994322 234688898998762 23 49999985
Q ss_pred chhcc---CC------hHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 252 WILHD---WD------DEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 252 ~vlh~---~~------~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
...|. |. .+....+|++++++|+ |||++++.
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lvi~ 145 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLK-PKGNFVVK 145 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHcc-CCCEEEEE
Confidence 43221 11 1223678999999999 99999874
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-08 Score=91.13 Aligned_cols=98 Identities=15% Similarity=0.097 Sum_probs=74.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------------CCCeEEEeccCCC--C-CC-Ccc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------------CEGIFHVGGDMFD--A-IP-KAD 246 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~i~~~~~d~~~--~-~p-~~D 246 (350)
..+.+||+||||.|..+..+++..+..+++.+|+ +++++.|+. .+|++++.+|..+ . .+ .||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4567999999999999998888655678999999 888887762 4799999999887 2 22 499
Q ss_pred EEEecchhc---cCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 247 AVFMKWILH---DWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 247 ~i~~~~vlh---~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
+|++-..-. ....--..++++.+++.|+ |||.+++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~Lk-PgGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLT-EDGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcC-CCcEEEEe
Confidence 999863110 0111123578999999999 99998764
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.6e-08 Score=90.05 Aligned_cols=97 Identities=14% Similarity=0.143 Sum_probs=77.2
Q ss_pred CcceEEEecCCchH--HHHH--HHHHCC----CCcEEEecc-hhHhhhCCC-----------------------------
Q 018775 186 SIQSLADVGGGTGG--ALAE--IVKSYP----HIKGINFDL-PHVVATAPV----------------------------- 227 (350)
Q Consensus 186 ~~~~vLDvG~G~G~--~~~~--l~~~~p----~~~~~~~D~-~~~~~~a~~----------------------------- 227 (350)
+..+|.-.||++|. ++++ +.+..+ ++++++.|+ +.+++.|+.
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 35899999999994 3333 334332 467899999 888776643
Q ss_pred --------CCCeEEEeccCCC-CCC---CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 228 --------CEGIFHVGGDMFD-AIP---KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 228 --------~~~i~~~~~d~~~-~~p---~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
..+|+|..+|..+ +.| .||+|+|.++|.|++++...+++++++++|+ |||.|++-
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~-pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLK-PDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhC-CCcEEEEe
Confidence 1567889999998 443 4999999999999999999999999999999 99998873
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.4e-09 Score=92.19 Aligned_cols=141 Identities=22% Similarity=0.322 Sum_probs=84.8
Q ss_pred CcceEEEecCCc--hHHHHHHHH-HCCCCcEEEecc-hhHhhhCCC----CCC--eEEEeccCCCC---C--C---C-cc
Q 018775 186 SIQSLADVGGGT--GGALAEIVK-SYPHIKGINFDL-PHVVATAPV----CEG--IFHVGGDMFDA---I--P---K-AD 246 (350)
Q Consensus 186 ~~~~vLDvG~G~--G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~----~~~--i~~~~~d~~~~---~--p---~-~D 246 (350)
+...+||||||. -.....+++ ..|+.+++.+|. |-++.+++. ..+ ..++.+|+.+| + | . .|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 788999999993 344555655 489999999999 888887764 344 89999999984 1 2 1 22
Q ss_pred -----EEEecchhccCCh-HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHH
Q 018775 247 -----AVFMKWILHDWDD-EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQE 320 (350)
Q Consensus 247 -----~i~~~~vlh~~~~-~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e 320 (350)
.+++..+||+++| ++...+++.+++.|. ||+.|.|.....+.... ......+.+-....+ ...||.+|
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~la-pGS~L~ish~t~d~~p~----~~~~~~~~~~~~~~~-~~~Rs~~e 221 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALA-PGSYLAISHATDDGAPE----RAEALEAVYAQAGSP-GRPRSREE 221 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS--TT-EEEEEEEB-TTSHH----HHHHHHHHHHHCCS-----B-HHH
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCC-CCceEEEEecCCCCCHH----HHHHHHHHHHcCCCC-ceecCHHH
Confidence 7888999999987 678899999999999 99999998876543221 112223333333334 67889999
Q ss_pred HHHHHHhcCCceeE
Q 018775 321 WMKLLEQGGFHRCK 334 (350)
Q Consensus 321 ~~~ll~~aGf~~~~ 334 (350)
+.++|. ||..++
T Consensus 222 i~~~f~--g~elve 233 (267)
T PF04672_consen 222 IAAFFD--GLELVE 233 (267)
T ss_dssp HHHCCT--TSEE-T
T ss_pred HHHHcC--CCccCC
Confidence 999996 887654
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.5e-09 Score=88.51 Aligned_cols=147 Identities=13% Similarity=0.109 Sum_probs=100.8
Q ss_pred hHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCe-EEEec---cCCC--CCCC
Q 018775 172 VMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGI-FHVGG---DMFD--AIPK 244 (350)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i-~~~~~---d~~~--~~p~ 244 (350)
...+++...+ ..+..++||+|||||.++..|...- -+.+++|+ .+|+++|.+..-. ++.+. +|.. ...+
T Consensus 113 ~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er 188 (287)
T COG4976 113 LLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQER 188 (287)
T ss_pred HHHHHHHhcc--CCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCc
Confidence 3445555565 4558999999999999998887653 25788999 8999998862111 11222 2443 2335
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKL 324 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~l 324 (350)
||+|+...||-++.. ...++--+...|+ |||.+.+.-...+..... ... ... -...+.+-...+
T Consensus 189 ~DLi~AaDVl~YlG~--Le~~~~~aa~~L~-~gGlfaFSvE~l~~~~~f-----~l~-ps~-------RyAH~~~YVr~~ 252 (287)
T COG4976 189 FDLIVAADVLPYLGA--LEGLFAGAAGLLA-PGGLFAFSVETLPDDGGF-----VLG-PSQ-------RYAHSESYVRAL 252 (287)
T ss_pred ccchhhhhHHHhhcc--hhhHHHHHHHhcC-CCceEEEEecccCCCCCe-----ecc-hhh-------hhccchHHHHHH
Confidence 999999999999776 4578999999999 999998855444443210 000 000 111246778899
Q ss_pred HHhcCCceeEEEEc
Q 018775 325 LEQGGFHRCKIISM 338 (350)
Q Consensus 325 l~~aGf~~~~~~~~ 338 (350)
++..||.++++.++
T Consensus 253 l~~~Gl~~i~~~~t 266 (287)
T COG4976 253 LAASGLEVIAIEDT 266 (287)
T ss_pred HHhcCceEEEeecc
Confidence 99999999998765
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.1e-08 Score=86.71 Aligned_cols=130 Identities=23% Similarity=0.335 Sum_probs=95.2
Q ss_pred eEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----C-CCeEEEeccCCCCCC-CccEEEec--chhcc--
Q 018775 189 SLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----C-EGIFHVGGDMFDAIP-KADAVFMK--WILHD-- 256 (350)
Q Consensus 189 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~-~~i~~~~~d~~~~~p-~~D~i~~~--~vlh~-- 256 (350)
+|||+|||+|..++.++.+.|++++++.|+ +.+++.|++ . .++.++.+|.+++.+ .||+|+++ ++-..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999999 888887764 2 556677779998665 59999985 33322
Q ss_pred -CC------------------hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCC
Q 018775 257 -WD------------------DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERT 317 (350)
Q Consensus 257 -~~------------------~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 317 (350)
.. -+-...++.++.+.|+ |||.+++ |.-. -.
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~-~~g~l~l-e~g~----------------------------~q 242 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILK-PGGVLIL-EIGL----------------------------TQ 242 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcC-CCcEEEE-EECC----------------------------Cc
Confidence 10 1235578888899999 9877664 2110 12
Q ss_pred HHHHHHHHHhcC-CceeEEEEc-CCceeEEEEe
Q 018775 318 EQEWMKLLEQGG-FHRCKIISM-PALYSIIEAY 348 (350)
Q Consensus 318 ~~e~~~ll~~aG-f~~~~~~~~-~~~~~vi~~~ 348 (350)
.+...+++.+.| |..+.+..- .+...++.++
T Consensus 243 ~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~ 275 (280)
T COG2890 243 GEAVKALFEDTGFFEIVETLKDLFGRDRVVLAK 275 (280)
T ss_pred HHHHHHHHHhcCCceEEEEEecCCCceEEEEEE
Confidence 678889999999 666666554 4445555554
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-08 Score=94.36 Aligned_cols=128 Identities=22% Similarity=0.175 Sum_probs=90.0
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC--
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP-- 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p-- 243 (350)
..++.... .+++.+|||+|||+|.++...+.. +.+++++|+ +.+++.++. ...+.+..+|+.+ +.+
T Consensus 172 ~~~~~l~~--~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~ 247 (329)
T TIGR01177 172 RAMVNLAR--VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSE 247 (329)
T ss_pred HHHHHHhC--CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccC
Confidence 33444444 567889999999999999886653 678999999 888776553 2348899999998 553
Q ss_pred CccEEEecch------hc-cCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccC
Q 018775 244 KADAVFMKWI------LH-DWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKER 316 (350)
Q Consensus 244 ~~D~i~~~~v------lh-~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (350)
.||+|++.-- .. +...+-...+|++++++|+ |||++++.-+ .
T Consensus 248 ~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk-~gG~lv~~~~---~--------------------------- 296 (329)
T TIGR01177 248 SVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLK-SEGWIVYAVP---T--------------------------- 296 (329)
T ss_pred CCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHcc-CCcEEEEEEc---C---------------------------
Confidence 4999998421 11 1111234689999999999 9999986431 1
Q ss_pred CHHHHHHHHHhcCCceeEEEEc
Q 018775 317 TEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 317 s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
..+|.++++++|| ++..+..
T Consensus 297 -~~~~~~~~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 297 -RIDLESLAEDAFR-VVKRFEV 316 (329)
T ss_pred -CCCHHHHHhhcCc-chheeee
Confidence 1244567899999 7776664
|
This family is found exclusively in the Archaea. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.4e-09 Score=93.87 Aligned_cols=97 Identities=23% Similarity=0.265 Sum_probs=74.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----------CCCeEEEeccCCC--C--CCCccEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----------CEGIFHVGGDMFD--A--IPKADAV 248 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~--~--~p~~D~i 248 (350)
+++.+||+||||.|.++..+++..+..+++++|+ +.+++.+++ .+|++++.+|..+ . ...||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4578999999999999999997655568999999 888887764 4689999999876 2 2249999
Q ss_pred EecchhccCChHH--HHHHHHHHHhhCCCCCceEEE
Q 018775 249 FMKWILHDWDDEA--CVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 249 ~~~~vlh~~~~~~--~~~~L~~~~~~L~~pgG~lli 282 (350)
++-..-+.-+... ..++++.+++.|+ |||.+++
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~-~gGvlv~ 189 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALK-EDGIFVA 189 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcC-CCcEEEE
Confidence 9854333222221 3578999999999 9999875
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.2e-09 Score=88.80 Aligned_cols=98 Identities=17% Similarity=0.277 Sum_probs=70.4
Q ss_pred CCcceEEEecCCchHH--HHH--HHHH----CC-CCcEEEecc-hhHhhhCCC---------------------------
Q 018775 185 DSIQSLADVGGGTGGA--LAE--IVKS----YP-HIKGINFDL-PHVVATAPV--------------------------- 227 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~--~~~--l~~~----~p-~~~~~~~D~-~~~~~~a~~--------------------------- 227 (350)
.+..+|.-.||++|.= +++ +... .+ ++++++.|+ +.+++.|+.
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 3678999999999943 333 3331 12 467899999 888887753
Q ss_pred -------CCCeEEEeccCCC-CCC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 228 -------CEGIFHVGGDMFD-AIP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 228 -------~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
..+|+|...|..+ +.+ .||+|+|.+||-+++++...++++++++.|+ |||.|++-
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~-pgG~L~lG 174 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLK-PGGYLFLG 174 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEE-EEEEEEE-
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcC-CCCEEEEe
Confidence 3689999999999 322 4999999999999999999999999999999 99999983
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.6e-08 Score=85.78 Aligned_cols=147 Identities=18% Similarity=0.259 Sum_probs=92.7
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCCCC-CccEEEecchhccCChHHHH
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDAIP-KADAVFMKWILHDWDDEACV 263 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~p-~~D~i~~~~vlh~~~~~~~~ 263 (350)
...++||||+|.|..+..++..+.++.+ .+. +.|....++ ..++++..|-....+ .||+|.|.|+|---.++ .
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~a--TE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P--~ 168 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYA--TEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP--L 168 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEe--ecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccCCH--H
Confidence 4678999999999999999998887444 455 777776664 334555444344222 59999999999764443 5
Q ss_pred HHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcC
Q 018775 264 KILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMP 339 (350)
Q Consensus 264 ~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~ 339 (350)
.+|+.++++|+ |+|++++.-...-.+-.+ ........-...+...+...+-..+.+.+.|+.+||++++...+|
T Consensus 169 ~LL~~i~~~l~-p~G~lilAvVlP~~pyVE-~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~P 242 (265)
T PF05219_consen 169 TLLRDIRRALK-PNGRLILAVVLPFRPYVE-FGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLP 242 (265)
T ss_pred HHHHHHHHHhC-CCCEEEEEEEecccccEE-cCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccC
Confidence 89999999999 999988754322111100 000000000001111111222234555689999999999987776
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1e-07 Score=81.28 Aligned_cols=158 Identities=15% Similarity=0.207 Sum_probs=104.9
Q ss_pred hhhhccCcchHHHHHHHHhh----hhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhh
Q 018775 148 WDFASQSPQFNNLFNDAMAC----TAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVA 223 (350)
Q Consensus 148 ~~~~~~~~~~~~~~~~~m~~----~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 223 (350)
++.+.++|.....|...... |-......+++.+. ..+....|.|+|||-+.++.. -.-.+..+|+-.
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik-~r~~~~vIaD~GCGEakiA~~-----~~~kV~SfDL~a--- 209 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIK-RRPKNIVIADFGCGEAKIASS-----ERHKVHSFDLVA--- 209 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHH-hCcCceEEEecccchhhhhhc-----cccceeeeeeec---
Confidence 44555666555555444332 22233556666665 235678999999999988761 122566677632
Q ss_pred hCCCCCCeEEEeccCCC-CCCC--ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccch
Q 018775 224 TAPVCEGIFHVGGDMFD-AIPK--ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGL 300 (350)
Q Consensus 224 ~a~~~~~i~~~~~d~~~-~~p~--~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~ 300 (350)
.+-.++..|+.. |.++ .|+++++-.|-. .+...++++++++|+ |||.+.|.|.-.
T Consensus 210 -----~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk-~gG~l~IAEv~S------------- 267 (325)
T KOG3045|consen 210 -----VNERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILK-PGGLLYIAEVKS------------- 267 (325)
T ss_pred -----CCCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhc-cCceEEEEehhh-------------
Confidence 234567889998 7663 999988766653 346689999999999 999999988322
Q ss_pred hhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 301 VFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 301 ~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
+.-+...+.+.|...||.+..+......+.+.+..|
T Consensus 268 -------------Rf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 268 -------------RFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred -------------hcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence 222345588889999999877665555555555443
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.1e-08 Score=83.01 Aligned_cols=100 Identities=13% Similarity=0.188 Sum_probs=78.8
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC--
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP-- 243 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p-- 243 (350)
...+++.+. .+++.+|||||||+|..+.-|++--. +++.+++ ++..+.|++ ..+|.++++|-..-.|
T Consensus 61 vA~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 61 VARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 345666666 88999999999999999998888644 7888888 888887765 4569999999999433
Q ss_pred -CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 244 -KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
+||.|+.....-..|+ .+.+-|+ |||++++-.-
T Consensus 137 aPyD~I~Vtaaa~~vP~--------~Ll~QL~-~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEVPE--------ALLDQLK-PGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCCCH--------HHHHhcc-cCCEEEEEEc
Confidence 5999999776665554 3566789 9999998654
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-08 Score=87.94 Aligned_cols=126 Identities=14% Similarity=0.283 Sum_probs=92.1
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CC--
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AI-- 242 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~-- 242 (350)
.++..++ ..++.+|||.|.|+|.++..|++. .|.-++..+|. ++..+.|++ .++|++..+|+.+ .+
T Consensus 31 ~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 31 YILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 4555666 889999999999999999999975 68889999998 777777664 5789999999976 33
Q ss_pred ---CCccEEEecchhccCChHHHHHHHHHHHhhC-CCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCH
Q 018775 243 ---PKADAVFMKWILHDWDDEACVKILKNCRQAI-PDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTE 318 (350)
Q Consensus 243 ---p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L-~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 318 (350)
..+|.|++ ++|++. ..+.++.++| + |||++.+.-+.... .
T Consensus 109 ~~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~-~gG~i~~fsP~ieQ----------------------------v 152 (247)
T PF08704_consen 109 ELESDFDAVFL-----DLPDPW--EAIPHAKRALKK-PGGRICCFSPCIEQ----------------------------V 152 (247)
T ss_dssp T-TTSEEEEEE-----ESSSGG--GGHHHHHHHE-E-EEEEEEEEESSHHH----------------------------H
T ss_pred cccCcccEEEE-----eCCCHH--HHHHHHHHHHhc-CCceEEEECCCHHH----------------------------H
Confidence 24899988 777775 5699999999 8 99999875433311 3
Q ss_pred HHHHHHHHhcCCceeEEEEc
Q 018775 319 QEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 319 ~e~~~ll~~aGf~~~~~~~~ 338 (350)
....+.|++.||..+++..+
T Consensus 153 ~~~~~~L~~~gf~~i~~~Ev 172 (247)
T PF08704_consen 153 QKTVEALREHGFTDIETVEV 172 (247)
T ss_dssp HHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHCCCeeeEEEEE
Confidence 44456678889988877554
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-08 Score=90.89 Aligned_cols=99 Identities=15% Similarity=0.245 Sum_probs=74.7
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC---C
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI---P 243 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---p 243 (350)
.+++.++ .+++.+|||||||+|.++..+++..+. ..++++|. +++++.+++ .+++.++.+|..+.. .
T Consensus 71 ~ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~ 148 (322)
T PRK13943 71 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFA 148 (322)
T ss_pred HHHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccC
Confidence 3444455 567789999999999999999988753 46889998 888776654 357899999987632 3
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+||+|++...+++. ...+.+.|+ |||++++..
T Consensus 149 ~fD~Ii~~~g~~~i--------p~~~~~~Lk-pgG~Lvv~~ 180 (322)
T PRK13943 149 PYDVIFVTVGVDEV--------PETWFTQLK-EGGRVIVPI 180 (322)
T ss_pred CccEEEECCchHHh--------HHHHHHhcC-CCCEEEEEe
Confidence 59999987655542 234677899 999988844
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.6e-08 Score=84.72 Aligned_cols=96 Identities=18% Similarity=0.245 Sum_probs=81.0
Q ss_pred CcceEEEecCCch----HHHHHHHHHCC-----CCcEEEecc-hhHhhhCCC----------------------------
Q 018775 186 SIQSLADVGGGTG----GALAEIVKSYP-----HIKGINFDL-PHVVATAPV---------------------------- 227 (350)
Q Consensus 186 ~~~~vLDvG~G~G----~~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~---------------------------- 227 (350)
+..+|.-.||++| .+++.+.+.++ .+++++.|+ ..+++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 5789999999999 34555666665 478899999 888887753
Q ss_pred -------CCCeEEEeccCCC-C-CCC-ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 228 -------CEGIFHVGGDMFD-A-IPK-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 228 -------~~~i~~~~~d~~~-~-~p~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
...|.|..+|..+ + .++ ||+|+|.+||-+++.+.-.++++++++.|+ |||.|++
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~-~gG~Lfl 239 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLK-PGGLLFL 239 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhC-CCCEEEE
Confidence 2468999999998 4 444 999999999999999988999999999999 9999998
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-08 Score=82.89 Aligned_cols=101 Identities=14% Similarity=0.279 Sum_probs=70.6
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCCC--c
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIPK--A 245 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p~--~ 245 (350)
..+++.++ ..++.+|||||||+|.++..++++ ..+++++|. +.+++.+++ ..+++++.+|+.+ +.+. +
T Consensus 3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~ 78 (169)
T smart00650 3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQP 78 (169)
T ss_pred HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCC
Confidence 34556666 667789999999999999999987 468999998 777776654 3589999999998 5553 8
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
|+|+++ ..++...+....++++. .+. ++|.+++
T Consensus 79 d~vi~n-~Py~~~~~~i~~~l~~~--~~~-~~~~l~~ 111 (169)
T smart00650 79 YKVVGN-LPYNISTPILFKLLEEP--PAF-RDAVLMV 111 (169)
T ss_pred CEEEEC-CCcccHHHHHHHHHhcC--CCc-ceEEEEE
Confidence 888764 45554444333443322 134 5555544
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.4e-08 Score=89.31 Aligned_cols=97 Identities=16% Similarity=0.128 Sum_probs=72.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC---CC--CCccEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD---AI--PKADAV 248 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~~--p~~D~i 248 (350)
+++.+||+||||.|.++..+++..+..+++.+|+ +.+++.+++ .+|++++.+|..+ .. ..||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 5678999999999999999987533457889998 778887654 3689999999754 23 249999
Q ss_pred EecchhccCChH--HHHHHHHHHHhhCCCCCceEEE
Q 018775 249 FMKWILHDWDDE--ACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 249 ~~~~vlh~~~~~--~~~~~L~~~~~~L~~pgG~lli 282 (350)
++-..-+.-+.. -...+++.+++.|+ |||.+++
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~-pgGvlv~ 204 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALR-PGGVVCT 204 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcC-CCcEEEE
Confidence 984332221211 13578999999999 9999865
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-08 Score=86.60 Aligned_cols=101 Identities=15% Similarity=0.231 Sum_probs=74.3
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC-
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP- 243 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p- 243 (350)
...+++.++ .+++.+|||||||+|.++.-++... +.-+++.+|. +...+.|++ ..+|+++.+|.....+
T Consensus 61 ~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 61 VARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE 138 (209)
T ss_dssp HHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred HHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc
Confidence 345667777 8899999999999999999988864 4446788898 888887765 4589999999887433
Q ss_pred --CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 244 --KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 244 --~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+||.|++.......|. .+.+.|+ +||+|++.-
T Consensus 139 ~apfD~I~v~~a~~~ip~--------~l~~qL~-~gGrLV~pi 172 (209)
T PF01135_consen 139 EAPFDRIIVTAAVPEIPE--------ALLEQLK-PGGRLVAPI 172 (209)
T ss_dssp G-SEEEEEESSBBSS--H--------HHHHTEE-EEEEEEEEE
T ss_pred CCCcCEEEEeeccchHHH--------HHHHhcC-CCcEEEEEE
Confidence 4999999877765443 3566689 999999843
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.3e-08 Score=88.34 Aligned_cols=98 Identities=19% Similarity=0.195 Sum_probs=74.2
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC--C--CCCccEEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD--A--IPKADAVF 249 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~--~--~p~~D~i~ 249 (350)
+.+.+||+||||+|.++..+++..+..+++++|+ +++++.+++ ..+++++.+|..+ . ...||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3456999999999999999988766678999998 788776653 3578888888765 1 23599999
Q ss_pred ecchhccCChHH--HHHHHHHHHhhCCCCCceEEEE
Q 018775 250 MKWILHDWDDEA--CVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 250 ~~~vlh~~~~~~--~~~~L~~~~~~L~~pgG~lli~ 283 (350)
+...-..-+... ..++++++++.|+ |||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~-pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALN-EDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhC-CCcEEEEc
Confidence 865432222222 3578999999999 99999874
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.5e-08 Score=94.20 Aligned_cols=97 Identities=24% Similarity=0.322 Sum_probs=74.2
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhCCC-------------CCCeEEEeccCCC---CCC-Cc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATAPV-------------CEGIFHVGGDMFD---AIP-KA 245 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------------~~~i~~~~~d~~~---~~p-~~ 245 (350)
+++.+|||||||+|..+..+++ +|. .+++.+|+ +++++.+++ .+|++++.+|..+ ..+ .|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4578999999999999999987 455 79999999 899887764 2689999999887 223 59
Q ss_pred cEEEecchhccCChH---HHHHHHHHHHhhCCCCCceEEEE
Q 018775 246 DAVFMKWILHDWDDE---ACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 246 D~i~~~~vlh~~~~~---~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
|+|++...-...+.. -..++++++++.|+ |||.+++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~-pgG~lv~~ 414 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLA-PDGLLVVQ 414 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcC-CCeEEEEe
Confidence 999986432221111 12468999999999 99998864
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.9e-08 Score=83.13 Aligned_cols=96 Identities=20% Similarity=0.249 Sum_probs=70.0
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEec-------cCCCCC--C-CccEEEecchh
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGG-------DMFDAI--P-KADAVFMKWIL 254 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~-------d~~~~~--p-~~D~i~~~~vl 254 (350)
....++|||||+|..++.++..+. ++++.|. +.|++.+++..++++... +..+-. + +.|+|++...+
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence 344999999999988888888765 5777888 999999988555554322 122211 2 39999999999
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
|-++-+ .+.+.++++||+|||.+.+....
T Consensus 111 HWFdle---~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 111 HWFDLE---RFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred HhhchH---HHHHHHHHHcCCCCCEEEEEEcc
Confidence 976654 67999999999556677765443
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=90.65 Aligned_cols=111 Identities=14% Similarity=0.180 Sum_probs=81.4
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCC---C-C
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDA---I-P 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~---~-p 243 (350)
......++ ..++.+|||+|||+|..+..+++..++.+++++|. +.+++.+++ ..+++++.+|..+. . +
T Consensus 234 ~~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~ 311 (427)
T PRK10901 234 QLAATLLA--PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDG 311 (427)
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhccc
Confidence 33444555 56788999999999999999999987789999999 888877754 23478999999862 2 2
Q ss_pred -CccEEEe----cc--hhcc-------CChHH-------HHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 244 -KADAVFM----KW--ILHD-------WDDEA-------CVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 244 -~~D~i~~----~~--vlh~-------~~~~~-------~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
.||.|++ +. ++.+ ...++ ..++|+++.+.|+ |||++++.....
T Consensus 312 ~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lk-pGG~lvystcs~ 375 (427)
T PRK10901 312 QPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLK-PGGTLLYATCSI 375 (427)
T ss_pred CCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCCC
Confidence 4999984 21 1211 11221 2478999999999 999999877544
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.1e-07 Score=95.98 Aligned_cols=122 Identities=20% Similarity=0.277 Sum_probs=88.7
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------------------CCCeEEEeccCCCCCC
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------------------CEGIFHVGGDMFDAIP 243 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------------~~~i~~~~~d~~~~~p 243 (350)
+.+|||||||+|..++.+++++|+.+++++|+ +.+++.|++ .+|++++.+|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999999899999999 888876632 1479999999998543
Q ss_pred ----CccEEEec--chhcc----CC--------------------------hH----HHHHHHHHHHhhCCCCCceEEEE
Q 018775 244 ----KADAVFMK--WILHD----WD--------------------------DE----ACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 244 ----~~D~i~~~--~vlh~----~~--------------------------~~----~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
.||+|+++ ++... ++ ++ -...++.++.+.|+ |||.+++
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~-pgG~l~l- 276 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIK-PMGIMIF- 276 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhcc-CCCEEEE-
Confidence 49999985 33211 00 01 12567778888899 9987763
Q ss_pred eeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH-HHHHhcCCceeEEEEc
Q 018775 284 EIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM-KLLEQGGFHRCKIISM 338 (350)
Q Consensus 284 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~-~ll~~aGf~~~~~~~~ 338 (350)
|.-. ...+.+. +++++.||+.++++..
T Consensus 277 EiG~----------------------------~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 277 NMGG----------------------------RPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred EECc----------------------------cHHHHHHHHHHHHCCCCeeEEeee
Confidence 3111 1245666 5888899998887664
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.7e-08 Score=87.81 Aligned_cols=151 Identities=19% Similarity=0.192 Sum_probs=96.3
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------------CCCeEEEeccCCCC-----C-
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------------CEGIFHVGGDMFDA-----I- 242 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~~i~~~~~d~~~~-----~- 242 (350)
++.+|||+|||-|.-+....... -..++++|+ +..++.|++ .-...++.+|.+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 78999999999998888777753 347899999 777766543 13456788888751 1
Q ss_pred -C--CccEEEecchhccC--ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCC-----------CCC---c---------
Q 018775 243 -P--KADAVFMKWILHDW--DDEACVKILKNCRQAIPDKSGKLVLVEIVVQED-----------GNN---I--------- 294 (350)
Q Consensus 243 -p--~~D~i~~~~vlh~~--~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~-----------~~~---~--------- 294 (350)
+ .||+|-|.+.||+. +.+.+..+|+++.+.|+ |||.++..-+....- ... +
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk-~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~ 219 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLK-PGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDS 219 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEE-EEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESC
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEecc
Confidence 2 49999999999994 56678889999999999 999999855322110 000 0
Q ss_pred ---ccccchhhhhhHhhhcCCccc--CCHHHHHHHHHhcCCceeEEEEc
Q 018775 295 ---FGDMGLVFDLVMFAHTTGGKE--RTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 295 ---~~~~~~~~~~~~~~~~~~~~~--~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
...++..+.+.+.....+-.+ -..+.+.+++++.|+..+.....
T Consensus 220 ~~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F 268 (331)
T PF03291_consen 220 DDFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNF 268 (331)
T ss_dssp CSS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEH
T ss_pred cCCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCCh
Confidence 001122222222222211222 26799999999999999887654
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.67 E-value=1e-07 Score=83.26 Aligned_cols=97 Identities=15% Similarity=0.173 Sum_probs=75.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC---------CCCc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA---------IPKA 245 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---------~p~~ 245 (350)
..+..+|||||||+|.-+..+++..+ +.+++.+|. ++.++.|++ .++|+++.+|..+. .++|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 44688999999999999999998764 679999999 887777654 57899999999762 1359
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
|+|++- -..+.-..++..+.+.|+ |||.+++-+..
T Consensus 146 D~VfiD-----a~k~~y~~~~~~~~~ll~-~GG~ii~dn~l 180 (234)
T PLN02781 146 DFAFVD-----ADKPNYVHFHEQLLKLVK-VGGIIAFDNTL 180 (234)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcC-CCeEEEEEcCC
Confidence 999873 223445678999999999 99987664433
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-07 Score=90.26 Aligned_cols=113 Identities=15% Similarity=0.193 Sum_probs=82.5
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CC--
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AI-- 242 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~-- 242 (350)
..+...++ ..++.+|||+|||+|..+..+++..+..+++++|. +++++.+++ ..++.+..+|... +.
T Consensus 228 ~~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~ 305 (426)
T TIGR00563 228 QWVATWLA--PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA 305 (426)
T ss_pred HHHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc
Confidence 34444555 56788999999999999999999887789999999 888776653 2234446777765 22
Q ss_pred --CCccEEEe------cchhccCCh-------HH-------HHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 243 --PKADAVFM------KWILHDWDD-------EA-------CVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 243 --p~~D~i~~------~~vlh~~~~-------~~-------~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
..||+|++ ..+++..++ ++ -.++|+++++.|+ |||+|+........
T Consensus 306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lk-pgG~lvystcs~~~ 373 (426)
T TIGR00563 306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLK-TGGTLVYATCSVLP 373 (426)
T ss_pred cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCCCCh
Confidence 24999985 245655443 11 2579999999999 99999998766644
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-07 Score=80.46 Aligned_cols=91 Identities=14% Similarity=0.110 Sum_probs=69.2
Q ss_pred cceEEEecCCchHHHHHHHHHC---CCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCC-CccEEEecchhccCC-
Q 018775 187 IQSLADVGGGTGGALAEIVKSY---PHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIP-KADAVFMKWILHDWD- 258 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh~~~- 258 (350)
+.+|||+|||+|.++..++++. +..+++++|+ +.+++.++. ..++.++..|+.. +.. .||+|+++-=.+...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 6799999999999999999874 4678999999 889888876 4568999999987 444 499999963332111
Q ss_pred -h--------HHHHHHHHHHHhhCCCCCc
Q 018775 259 -D--------EACVKILKNCRQAIPDKSG 278 (350)
Q Consensus 259 -~--------~~~~~~L~~~~~~L~~pgG 278 (350)
+ .-...+++++.++++ ||+
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~-~G~ 157 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIAR-QGT 157 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcC-CCE
Confidence 1 224468999999777 665
|
|
| >PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.5e-08 Score=64.03 Aligned_cols=49 Identities=49% Similarity=0.817 Sum_probs=41.8
Q ss_pred HHHHHHHhcChhhhhhhCC-CCCCHHHHHhhcC-CCCCCcccHHHHHHHhh
Q 018775 25 MALKSAVELRLADIMHSHG-SPITLPQLASRID-SSCPDIPYLARLMRMLV 73 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~-~~~t~~ela~~~~-~~~~~~~~l~~~L~~L~ 73 (350)
.+|++|++|||||.|.+.| +++|.+||+.+++ .+|..+..+.|+||.|+
T Consensus 1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 4799999999999998875 7999999999999 66656779999999985
|
It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A .... |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.1e-07 Score=89.09 Aligned_cols=104 Identities=15% Similarity=0.191 Sum_probs=77.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC-CccEEEec--
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP-KADAVFMK-- 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p-~~D~i~~~-- 251 (350)
..++.+|||+|||+|..+..+++..+ ..+++++|. +.+++.+++ ..+|+++.+|..+ +.+ .||+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 45678999999999999999888653 458999999 888877654 2468999999987 322 49999861
Q ss_pred ----chh-------ccCChHHH-------HHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 252 ----WIL-------HDWDDEAC-------VKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 252 ----~vl-------h~~~~~~~-------~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
.++ .+++.++. .++|+++.+.|+ |||+++.......
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk-pgG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLK-PGGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCCCC
Confidence 111 12233322 368999999999 9999998775554
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.9e-07 Score=74.36 Aligned_cols=122 Identities=20% Similarity=0.218 Sum_probs=90.8
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCCCCeEEEeccCCC-CCC-----CccEEEecchhccCCh
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFD-AIP-----KADAVFMKWILHDWDD 259 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~~p-----~~D~i~~~~vlh~~~~ 259 (350)
...++|||||=+....+. ..+-..++-+|+.+ ..-.+...||++ |.| .||+|.++-||.+.|+
T Consensus 51 ~~lrlLEVGals~~N~~s---~~~~fdvt~IDLns--------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~ 119 (219)
T PF11968_consen 51 PKLRLLEVGALSTDNACS---TSGWFDVTRIDLNS--------QHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPD 119 (219)
T ss_pred ccceEEeecccCCCCccc---ccCceeeEEeecCC--------CCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCC
Confidence 347999999975554433 24455688888732 123357889998 776 2999999999999996
Q ss_pred H-HHHHHHHHHHhhCCCCCce-----EEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCcee
Q 018775 260 E-ACVKILKNCRQAIPDKSGK-----LVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRC 333 (350)
Q Consensus 260 ~-~~~~~L~~~~~~L~~pgG~-----lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~ 333 (350)
+ +.-++++++++.|+ |+|. |+|+-+... ..+ .+-.+.+.|.++++.-||..+
T Consensus 120 p~~RG~Ml~r~~~fL~-~~g~~~~~~LFlVlP~~C--------------------v~N-SRy~~~~~l~~im~~LGf~~~ 177 (219)
T PF11968_consen 120 PKQRGEMLRRAHKFLK-PPGLSLFPSLFLVLPLPC--------------------VTN-SRYMTEERLREIMESLGFTRV 177 (219)
T ss_pred HHHHHHHHHHHHHHhC-CCCccCcceEEEEeCchH--------------------hhc-ccccCHHHHHHHHHhCCcEEE
Confidence 5 57799999999999 9999 776532211 123 566678999999999999999
Q ss_pred EEEEcCC
Q 018775 334 KIISMPA 340 (350)
Q Consensus 334 ~~~~~~~ 340 (350)
+.+..+-
T Consensus 178 ~~~~~~K 184 (219)
T PF11968_consen 178 KYKKSKK 184 (219)
T ss_pred EEEecCe
Confidence 9877654
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=3e-07 Score=88.18 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=78.8
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCC---CC-
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDA---IP- 243 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~---~p- 243 (350)
+...+. ..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++ ..+|+++.+|+.+. ++
T Consensus 242 v~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~ 319 (444)
T PRK14902 242 VAPALD--PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAE 319 (444)
T ss_pred HHHHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcc
Confidence 333444 5667899999999999999999876 6779999999 887776653 24599999999762 33
Q ss_pred CccEEEecc------hhcc-------CChHH-------HHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 244 KADAVFMKW------ILHD-------WDDEA-------CVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 244 ~~D~i~~~~------vlh~-------~~~~~-------~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
.||+|++.- ++.+ ++..+ ...+|+++.+.|+ |||+|+......
T Consensus 320 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk-pGG~lvystcs~ 382 (444)
T PRK14902 320 KFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLK-KGGILVYSTCTI 382 (444)
T ss_pred cCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEcCCC
Confidence 499998731 1111 11112 2468999999999 999998655433
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.9e-07 Score=82.06 Aligned_cols=96 Identities=21% Similarity=0.307 Sum_probs=75.2
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------------CCCeEEEeccCCC-C----C----
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------------CEGIFHVGGDMFD-A----I---- 242 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~i~~~~~d~~~-~----~---- 242 (350)
++...++|+|||-|.-++..-++.- -.++++|+ +-.++.++. .-.+.|+++|.+. . +
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 5788999999999998888776532 36889999 555666654 2246789998886 1 2
Q ss_pred CCccEEEecchhcc-C-ChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 243 PKADAVFMKWILHD-W-DDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 243 p~~D~i~~~~vlh~-~-~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
|.||+|-|.+++|+ | +.+.+.-+|+++.+.|+ |||.++-
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~Lk-pGG~FIg 235 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLK-PGGVFIG 235 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcC-CCcEEEE
Confidence 23999999999998 3 45568899999999999 9999874
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.5e-07 Score=87.34 Aligned_cols=109 Identities=15% Similarity=0.126 Sum_probs=80.7
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C----C
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A----I 242 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~----~ 242 (350)
+...++ ..++.+|||+|||+|..+..+++... ..+++++|. +++++.+++ ..+|+++.+|..+ + .
T Consensus 244 ~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~ 321 (434)
T PRK14901 244 VAPLLD--PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQ 321 (434)
T ss_pred HHHHhC--CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccccc
Confidence 334455 56788999999999999999998753 468999998 888876654 3468999999886 3 1
Q ss_pred C--CccEEEec------chhccCCh-------HH-------HHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 243 P--KADAVFMK------WILHDWDD-------EA-------CVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 243 p--~~D~i~~~------~vlh~~~~-------~~-------~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
+ .||.|++- .++++.++ ++ -.++|+++.+.|+ |||+|+......
T Consensus 322 ~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk-pgG~lvystcsi 387 (434)
T PRK14901 322 WRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLK-PGGTLVYATCTL 387 (434)
T ss_pred ccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCCC
Confidence 1 49999972 34544332 11 2588999999999 999998766444
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.1e-07 Score=75.61 Aligned_cols=101 Identities=17% Similarity=0.164 Sum_probs=67.8
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC---------CCCeEEEeccCCCCC------C-CccE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV---------CEGIFHVGGDMFDAI------P-KADA 247 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~i~~~~~d~~~~~------p-~~D~ 247 (350)
...+.+|||+|||+|..++.+++..+..+++..|.+++++..+. ..++++...|..++. + .||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 45688999999999999999998867778999998556654332 467888888765521 2 4999
Q ss_pred EEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 248 VFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 248 i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
|+.+.++++ ++....+++.+.++|+ |+|.+++....+
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~-~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLK-PNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBT-T-TTEEEEEE-S
T ss_pred EEEecccch--HHHHHHHHHHHHHHhC-CCCEEEEEeCEe
Confidence 999999997 6677899999999999 999977766554
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-07 Score=77.96 Aligned_cols=97 Identities=21% Similarity=0.381 Sum_probs=69.0
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCC----CC--CccEEEecch
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDA----IP--KADAVFMKWI 253 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~----~p--~~D~i~~~~v 253 (350)
...+||||||.|.++..+++.+|+..++++|. ...+..+.. ..++.++++|...- ++ +.|-|.+.+
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F- 96 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF- 96 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC-
Confidence 34999999999999999999999999999998 666554432 68899999998871 23 366555421
Q ss_pred hccCChH-------HHHHHHHHHHhhCCCCCceEEEEee
Q 018775 254 LHDWDDE-------ACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 254 lh~~~~~-------~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
---|+.. -...+|+.+.++|+ |||.|.+...
T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~-~gG~l~~~TD 134 (195)
T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLK-PGGELYFATD 134 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEE-EEEEEEEEES
T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcC-CCCEEEEEeC
Confidence 1112211 12478999999999 9999987553
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-06 Score=70.26 Aligned_cols=114 Identities=21% Similarity=0.246 Sum_probs=91.6
Q ss_pred hhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-C----
Q 018775 170 KIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-A---- 241 (350)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~---- 241 (350)
...++.+.+..+ ...+.-|||+|.|+|.++.+++++ .++-..+.++. ++-.....+ .+.+.++.||.+. .
T Consensus 34 s~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~ 111 (194)
T COG3963 34 SILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLG 111 (194)
T ss_pred HHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHh
Confidence 334555666666 678889999999999999998886 46667777777 777666655 6677799999887 3
Q ss_pred -CC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 242 -IP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 242 -~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
.+ .||.|++.-=+-.+|.....++|+++...|+ +||.++.....
T Consensus 112 e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~-~gg~lvqftYg 158 (194)
T COG3963 112 EHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLP-AGGPLVQFTYG 158 (194)
T ss_pred hcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcC-CCCeEEEEEec
Confidence 22 3999999988888999999999999999999 99999887655
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.2e-07 Score=79.85 Aligned_cols=104 Identities=15% Similarity=0.224 Sum_probs=75.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C--CCCccEEEec-
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A--IPKADAVFMK- 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~p~~D~i~~~- 251 (350)
..++.+|||+|||+|..+..+++... ...++.+|. +..++.+++ ..+|+++..|... + .+.||+|++-
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 45778999999999999999998764 358999999 887776653 3468899998765 2 2359999862
Q ss_pred -----chhcc-------CChHHH-------HHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 252 -----WILHD-------WDDEAC-------VKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 252 -----~vlh~-------~~~~~~-------~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
.++.. |..++. .++|+++.+.|+ |||+|+.......
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk-pgG~lvYstcs~~ 203 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALK-PGGVLVYSTCSLE 203 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCCCC
Confidence 12221 222222 469999999999 9999987655443
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.4e-07 Score=85.72 Aligned_cols=105 Identities=14% Similarity=0.152 Sum_probs=77.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C-C-C-CccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A-I-P-KADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~-~-p-~~D~i~~~ 251 (350)
..++.+|||+|||+|..+..++... +..+++.+|+ +..++.+++ ..+++++.+|..+ + . + .||.|++-
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 5678899999999999999999875 4678999999 888877654 2458899999876 3 2 2 49999861
Q ss_pred ------chhcc-------CChHH-------HHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 252 ------WILHD-------WDDEA-------CVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 252 ------~vlh~-------~~~~~-------~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
.++.. ++.++ -.++|+++.+.|+ |||.++........
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk-pGG~LvYsTCs~~~ 371 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLE-KGGILLYSTCTVTK 371 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEECCCCh
Confidence 22221 22111 2578999999999 99998876665543
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.9e-07 Score=78.17 Aligned_cols=110 Identities=15% Similarity=0.233 Sum_probs=67.9
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---------------CCCeEEEeccC
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---------------CEGIFHVGGDM 238 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~i~~~~~d~ 238 (350)
.+++.+. +.+...++|||||.|......+..++--+++|+++ +...+.+.. ..++++..+|+
T Consensus 33 ~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 33 KILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 3445555 67789999999999999988887766555999998 665543321 46788999999
Q ss_pred CC-CC-----CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCC
Q 018775 239 FD-AI-----PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQED 290 (350)
Q Consensus 239 ~~-~~-----p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~ 290 (350)
.+ +. .++|+|++++++. +++...-|++....|| ||.+++-.....+..
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~F---~~~l~~~L~~~~~~lk-~G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTCF---DPDLNLALAELLLELK-PGARIISTKPFCPRR 164 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS--TT-EEEESS-SS-TT
T ss_pred cccHhHhhhhcCCCEEEEecccc---CHHHHHHHHHHHhcCC-CCCEEEECCCcCCCC
Confidence 98 32 3589999998875 3445566677888899 998887655555443
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.3e-07 Score=79.14 Aligned_cols=82 Identities=16% Similarity=0.242 Sum_probs=63.4
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCCCcc
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIPKAD 246 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p~~D 246 (350)
...+++.++ ..++.+|||||||+|.++..++++. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++.+|
T Consensus 18 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d 93 (258)
T PRK14896 18 VDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFN 93 (258)
T ss_pred HHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhce
Confidence 345555555 6678899999999999999999983 47899998 778776654 3679999999998 777899
Q ss_pred EEEecchhccCCh
Q 018775 247 AVFMKWILHDWDD 259 (350)
Q Consensus 247 ~i~~~~vlh~~~~ 259 (350)
.|+++ ..++++.
T Consensus 94 ~Vv~N-lPy~i~s 105 (258)
T PRK14896 94 KVVSN-LPYQISS 105 (258)
T ss_pred EEEEc-CCcccCc
Confidence 88774 4444443
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.7e-07 Score=78.83 Aligned_cols=91 Identities=12% Similarity=0.199 Sum_probs=65.4
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCCCcc
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIPKAD 246 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p~~D 246 (350)
...+++.++ ..++.+|||||||+|.++..++++.+ .++++|. +.+++.++. ..+++++.+|+.+ +.+.+|
T Consensus 18 ~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d 93 (253)
T TIGR00755 18 IQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP 93 (253)
T ss_pred HHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence 345556565 66788999999999999999999876 4888888 777776654 4689999999998 665566
Q ss_pred --EEEecchhccCChHHHHHHHHHHHh
Q 018775 247 --AVFMKWILHDWDDEACVKILKNCRQ 271 (350)
Q Consensus 247 --~i~~~~vlh~~~~~~~~~~L~~~~~ 271 (350)
.++.++.-++++. .++.++..
T Consensus 94 ~~~~vvsNlPy~i~~----~il~~ll~ 116 (253)
T TIGR00755 94 KQLKVVSNLPYNISS----PLIFKLLE 116 (253)
T ss_pred CcceEEEcCChhhHH----HHHHHHhc
Confidence 3444455555443 44555554
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-06 Score=79.62 Aligned_cols=144 Identities=19% Similarity=0.217 Sum_probs=89.6
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--------CCCeEEEe----ccCCCCC--C--CccEE
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--------CEGIFHVG----GDMFDAI--P--KADAV 248 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~----~d~~~~~--p--~~D~i 248 (350)
...++||||||+|.....++.+.++.+++++|+ +.+++.|+. .++|++.. .+++... + .||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 568999999999999888888888999999999 888887764 35777754 2333321 2 49999
Q ss_pred EecchhccCChHH---HHHHHHHHH----------------hhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhh
Q 018775 249 FMKWILHDWDDEA---CVKILKNCR----------------QAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAH 309 (350)
Q Consensus 249 ~~~~vlh~~~~~~---~~~~L~~~~----------------~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (350)
+|+-=+|.-..+. ...-.+++. +.+. +||.+-++..+..+... ..........
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~-~GGe~~fi~~mi~eS~~-------~~~~~gwfts 265 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWC-EGGEVAFIKRMIEESKA-------FAKQVLWFTS 265 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheee-CCcEeeeehHhhHHHHH-------HHhhCcEEEE
Confidence 9986655422221 112233332 2233 45554444443333210 0000000001
Q ss_pred cCCcccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 310 TTGGKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 310 ~~~~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
+- ++.-+...+.+.|++.|...+++..+
T Consensus 266 mv-~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 266 LV-SKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred Ee-eccCCHHHHHHHHHHcCCceEEEEEE
Confidence 11 45558999999999999988888887
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.6e-07 Score=78.99 Aligned_cols=80 Identities=10% Similarity=0.149 Sum_probs=60.8
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---CCCeEEEeccCCC-CCCCc--c
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---CEGIFHVGGDMFD-AIPKA--D 246 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~p~~--D 246 (350)
..+++.++ ..++.+|||||||+|.++..++++.+ +++++|. +.+++.+++ ..+++++.+|+.+ +.+.+ |
T Consensus 32 ~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 32 DKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred HHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcc
Confidence 44555555 56778999999999999999999875 7899998 888887764 3689999999998 65543 5
Q ss_pred EEEecchhccCC
Q 018775 247 AVFMKWILHDWD 258 (350)
Q Consensus 247 ~i~~~~vlh~~~ 258 (350)
+|++ +.-++.+
T Consensus 108 ~vv~-NlPY~is 118 (272)
T PRK00274 108 KVVA-NLPYNIT 118 (272)
T ss_pred eEEE-eCCccch
Confidence 5554 4444444
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.6e-07 Score=73.78 Aligned_cols=98 Identities=18% Similarity=0.185 Sum_probs=73.0
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHH--CCCCcEEEecc-hhHhhhCCC----------------CCCeEEEec
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKS--YPHIKGINFDL-PHVVATAPV----------------CEGIFHVGG 236 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~----------------~~~i~~~~~ 236 (350)
+++.+++.+.++.++||||+|+|.++..++.- -+....+++|. |+.++..++ ..++.++.|
T Consensus 72 ~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvG 151 (237)
T KOG1661|consen 72 ALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVG 151 (237)
T ss_pred HHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeC
Confidence 34444445678999999999999999887753 23444488888 888876543 457889999
Q ss_pred cCCCC---CCCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 237 DMFDA---IPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 237 d~~~~---~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
|..+- ..+||.|.+.. .+.++.+++-+-|+ |||+++|
T Consensus 152 Dgr~g~~e~a~YDaIhvGA--------aa~~~pq~l~dqL~-~gGrlli 191 (237)
T KOG1661|consen 152 DGRKGYAEQAPYDAIHVGA--------AASELPQELLDQLK-PGGRLLI 191 (237)
T ss_pred CccccCCccCCcceEEEcc--------CccccHHHHHHhhc-cCCeEEE
Confidence 99983 33599999863 23456778888899 9999987
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1e-06 Score=83.79 Aligned_cols=128 Identities=18% Similarity=0.256 Sum_probs=80.3
Q ss_pred ChhhhhccCcchHHHHHHHHhhhhhhhHHHHHHhcccC--CCCcceEEEecCCchHHHHHHHHHC----CCCcEEEecc-
Q 018775 146 EIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDG--FDSIQSLADVGGGTGGALAEIVKSY----PHIKGINFDL- 218 (350)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~D~- 218 (350)
..|+.+++|+..-..|.+++.. .+.+..... ......|+|||||+|-++...+++. ...+++.++-
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn 223 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKN 223 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESS
T ss_pred ccHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 3467777777766666665533 222222200 0135789999999999987766653 3568888886
Q ss_pred hhHhhhC------CC-CCCeEEEeccCCC-CCC-CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEE
Q 018775 219 PHVVATA------PV-CEGIFHVGGDMFD-AIP-KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLV 281 (350)
Q Consensus 219 ~~~~~~a------~~-~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~ll 281 (350)
+.++... .. .++|+++.+|+.+ ..| .+|+|++...-.....+-..+.|....+.|+ |||.++
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLk-p~Gi~I 294 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLK-PDGIMI 294 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEE-EEEEEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcC-CCCEEe
Confidence 5443322 11 6899999999999 666 4999998665443333445677999999999 998776
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-06 Score=77.32 Aligned_cols=97 Identities=14% Similarity=0.113 Sum_probs=75.8
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-C------CCc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-I------PKA 245 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~------p~~ 245 (350)
..+..+|||||+++|..+..++...| +.+++.+|. ++..+.|++ .++|+++.||..+ + . ++|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45689999999999999999998765 567889998 777776654 5799999999876 2 1 259
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
|+|+. +-+...-...++.+.+.|+ |||.+++=+..
T Consensus 196 D~VFI-----Da~K~~Y~~y~e~~l~lL~-~GGvIV~DNvL 230 (278)
T PLN02476 196 DFAFV-----DADKRMYQDYFELLLQLVR-VGGVIVMDNVL 230 (278)
T ss_pred CEEEE-----CCCHHHHHHHHHHHHHhcC-CCcEEEEecCc
Confidence 99987 3234456788999999999 99987663333
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1e-06 Score=73.60 Aligned_cols=93 Identities=16% Similarity=0.165 Sum_probs=69.7
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCC--eEEEeccCCC--CCCC--ccEEEecchhc---
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEG--IFHVGGDMFD--AIPK--ADAVFMKWILH--- 255 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~--i~~~~~d~~~--~~p~--~D~i~~~~vlh--- 255 (350)
...-|||||||+|.-+..|... +...+++|+ |+|++.|.+ .. =.++-+|+-+ |+++ ||.+|+...+.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~-~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLc 126 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE-RELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLC 126 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeec
Confidence 3789999999999988877764 578899999 999999875 22 2467788887 4443 99776643331
Q ss_pred ------cCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 256 ------DWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 256 ------~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
|.|......++..++.+|+ +|++-++
T Consensus 127 nA~~s~~~P~~Rl~~FF~tLy~~l~-rg~raV~ 158 (270)
T KOG1541|consen 127 NADKSLHVPKKRLLRFFGTLYSCLK-RGARAVL 158 (270)
T ss_pred ccCccccChHHHHHHHhhhhhhhhc-cCceeEE
Confidence 1244456678888999999 9999775
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.34 E-value=3e-07 Score=78.22 Aligned_cols=94 Identities=16% Similarity=0.223 Sum_probs=73.6
Q ss_pred CCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-------CCCcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-------IPKAD 246 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-------~p~~D 246 (350)
.+..+||+||+++|.-+..+++..| +.+++.+|. ++..+.|++ .++|+++.+|..+ + ..+||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 4578999999999999999999886 589999998 777776654 5799999999875 1 12599
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+|++-. ...+-...+..+.+.|+ |||.+++=+
T Consensus 124 ~VFiDa-----~K~~y~~y~~~~~~ll~-~ggvii~DN 155 (205)
T PF01596_consen 124 FVFIDA-----DKRNYLEYFEKALPLLR-PGGVIIADN 155 (205)
T ss_dssp EEEEES-----TGGGHHHHHHHHHHHEE-EEEEEEEET
T ss_pred EEEEcc-----cccchhhHHHHHhhhcc-CCeEEEEcc
Confidence 999833 34446678999999999 998877643
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.7e-06 Score=79.10 Aligned_cols=96 Identities=15% Similarity=0.131 Sum_probs=72.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC--C-C-CCccEEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD--A-I-PKADAVF 249 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~--~-~-p~~D~i~ 249 (350)
+...+||.||||.|..+..+++..+..+++.+|+ +.+++.+++ .+|++++.+|..+ . . ..||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3568999999999999999998766678999999 888887764 4789999999887 2 2 2499999
Q ss_pred ecchhccCC--hH---HHHHHHH-HHHhhCCCCCceEEE
Q 018775 250 MKWILHDWD--DE---ACVKILK-NCRQAIPDKSGKLVL 282 (350)
Q Consensus 250 ~~~vlh~~~--~~---~~~~~L~-~~~~~L~~pgG~lli 282 (350)
+--. ..+. .. -..++++ .+++.|+ |||.+++
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~-p~Gvlv~ 218 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLN-PGGIFVT 218 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcC-CCcEEEE
Confidence 8521 1110 00 0246787 8999999 9998765
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-06 Score=83.08 Aligned_cols=100 Identities=7% Similarity=0.073 Sum_probs=70.3
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCC----
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDA---- 241 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~---- 241 (350)
...+++.+. ..++.+|||+|||+|.++..+++.. .+++++|. +++++.|++ ..+++++.+|+.+.
T Consensus 286 ~~~vl~~l~--~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~ 361 (443)
T PRK13168 286 VARALEWLD--PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQ 361 (443)
T ss_pred HHHHHHHhc--CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhh
Confidence 344444444 4567899999999999999999875 58999999 888887764 34699999998752
Q ss_pred -CC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 242 -IP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 242 -~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
++ .||+|++. -|......+++.+.+ ++ |++.+++.
T Consensus 362 ~~~~~~fD~Vi~d-----PPr~g~~~~~~~l~~-~~-~~~ivyvS 399 (443)
T PRK13168 362 PWALGGFDKVLLD-----PPRAGAAEVMQALAK-LG-PKRIVYVS 399 (443)
T ss_pred hhhcCCCCEEEEC-----cCCcChHHHHHHHHh-cC-CCeEEEEE
Confidence 21 39999872 222223345555555 57 87776653
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.1e-06 Score=73.17 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=78.8
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEe-ccCCC--C---CCCccEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVG-GDMFD--A---IPKADAV 248 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~-~d~~~--~---~p~~D~i 248 (350)
..+..+||+||.+.|.-++.++...| +.+.+.+|+ ++..+.|++ .++|+++. +|..+ . .++||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56789999999999999999999998 888999999 888888775 67788888 57776 2 2459999
Q ss_pred EecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 249 FMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 249 ~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
+. +-...+-...+..+.+.|+ |||.+++ |.+...
T Consensus 137 FI-----DadK~~yp~~le~~~~lLr-~GGliv~-DNvl~~ 170 (219)
T COG4122 137 FI-----DADKADYPEYLERALPLLR-PGGLIVA-DNVLFG 170 (219)
T ss_pred EE-----eCChhhCHHHHHHHHHHhC-CCcEEEE-eecccC
Confidence 97 3234445688999999999 9987765 444433
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.7e-06 Score=76.47 Aligned_cols=95 Identities=17% Similarity=0.172 Sum_probs=72.2
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCC-CCCC-ccEEEecchhcc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFD-AIPK-ADAVFMKWILHD 256 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~p~-~D~i~~~~vlh~ 256 (350)
.+..|||||||+|-++.-.+++.. -++..++-.+|.+.|++ .+||++++|.+++ ..|+ .|+|+..-.-.-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~m 255 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYM 255 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCc-ceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhh
Confidence 367999999999999987777643 46777777888887765 7899999999999 7886 999998543333
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
+-.+.-.+.--.+++.|+ |.|+++-
T Consensus 256 L~NERMLEsYl~Ark~l~-P~GkMfP 280 (517)
T KOG1500|consen 256 LVNERMLESYLHARKWLK-PNGKMFP 280 (517)
T ss_pred hhhHHHHHHHHHHHhhcC-CCCcccC
Confidence 324433344446789999 9999874
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.6e-06 Score=76.69 Aligned_cols=88 Identities=18% Similarity=0.305 Sum_probs=66.8
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCCC
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIPK 244 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p~ 244 (350)
..+++... ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+.
T Consensus 26 ~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 26 DKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 45555555 6678899999999999999999874 46888888 778776653 3689999999998 6777
Q ss_pred ccEEEecchhccCChHHHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKIL 266 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L 266 (350)
+|+|++ +.-++++.+-...+|
T Consensus 102 ~d~Vva-NlPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCVA-NVPYQISSPLVFKLL 122 (294)
T ss_pred cCEEEe-cCCcccCcHHHHHHH
Confidence 897775 566666665544444
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.9e-06 Score=63.69 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=69.2
Q ss_pred HHHhcccCCCCcceEEEecCCchH-HHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCCCC----CccEEE
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGG-ALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDAIP----KADAVF 249 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~p----~~D~i~ 249 (350)
+.+.++ ...+.+|||||||+|. ++..|.+. +..++++|. +..++.+++ ..+.++..|++++-+ ++|+|.
T Consensus 8 l~~~~~--~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 8 IAENYE--KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred HHHhcc--cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEE
Confidence 444444 3346899999999996 77777764 578999999 888887763 457899999999533 499998
Q ss_pred ecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 250 MKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 250 ~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
..+ |+.+.+.-+.++.+... .-++|.
T Consensus 83 sir-----pp~el~~~~~~la~~~~---~~~~i~ 108 (134)
T PRK04148 83 SIR-----PPRDLQPFILELAKKIN---VPLIIK 108 (134)
T ss_pred EeC-----CCHHHHHHHHHHHHHcC---CCEEEE
Confidence 855 55666666777777655 455543
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.9e-06 Score=77.53 Aligned_cols=96 Identities=16% Similarity=0.074 Sum_probs=68.8
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------C-CCeEEEeccCCCC---C----CCccEEE
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------C-EGIFHVGGDMFDA---I----PKADAVF 249 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~~i~~~~~d~~~~---~----p~~D~i~ 249 (350)
++.+|||+|||+|.++...+.. ...+++.+|. +.+++.+++ . .+++++.+|+++. . ..||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 5789999999999998876643 3458999999 888887664 2 4789999999872 1 2499999
Q ss_pred ecchhccCCh--------HHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 250 MKWILHDWDD--------EACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 250 ~~~vlh~~~~--------~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+.-=- .... .....+++.+.+.|+ |||.|+...
T Consensus 299 lDPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk-~gG~lv~~s 339 (396)
T PRK15128 299 MDPPK-FVENKSQLMGACRGYKDINMLAIQLLN-PGGILLTFS 339 (396)
T ss_pred ECCCC-CCCChHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEEe
Confidence 85111 1011 123456677889999 999988643
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=4e-06 Score=71.06 Aligned_cols=92 Identities=10% Similarity=0.068 Sum_probs=62.5
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC---C-CccEEEecchh
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI---P-KADAVFMKWIL 254 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---p-~~D~i~~~~vl 254 (350)
.+.+|||+|||+|.+++.++.+.. .+++++|. +.+++.+++ ..+++++.+|+.+.. . .||+|++.-=.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 457999999999999987666543 58999998 777776554 347999999988622 2 49999985332
Q ss_pred ccCChHHHHHHHHHHHh--hCCCCCceEEE
Q 018775 255 HDWDDEACVKILKNCRQ--AIPDKSGKLVL 282 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~--~L~~pgG~lli 282 (350)
+. .-...+++.+.. .++ |++.+++
T Consensus 132 ~~---g~~~~~l~~l~~~~~l~-~~~iv~v 157 (199)
T PRK10909 132 RK---GLLEETINLLEDNGWLA-DEALIYV 157 (199)
T ss_pred CC---ChHHHHHHHHHHCCCcC-CCcEEEE
Confidence 21 112234444444 478 8775554
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=5e-06 Score=73.99 Aligned_cols=96 Identities=21% Similarity=0.303 Sum_probs=76.7
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC---CCC-CccEEEe
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD---AIP-KADAVFM 250 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~~p-~~D~i~~ 250 (350)
...+||-||+|.|.++..+++..+--+++.+|+ +.+++.+++ ..|++++.+|..+ ..+ .||+|++
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 346999999999999999999988889999999 999998775 3899999999887 344 4999998
Q ss_pred cchhccCChH---HHHHHHHHHHhhCCCCCceEEEE
Q 018775 251 KWILHDWDDE---ACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 251 ~~vlh~~~~~---~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
-..=. ..+. -...+++.++++|+ |+|.++..
T Consensus 156 D~tdp-~gp~~~Lft~eFy~~~~~~L~-~~Gi~v~q 189 (282)
T COG0421 156 DSTDP-VGPAEALFTEEFYEGCRRALK-EDGIFVAQ 189 (282)
T ss_pred cCCCC-CCcccccCCHHHHHHHHHhcC-CCcEEEEe
Confidence 43222 1110 12578999999999 99998875
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=1e-05 Score=74.06 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=52.1
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C--C-CCccEEEec
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A--I-PKADAVFMK 251 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~-p~~D~i~~~ 251 (350)
++.+|||+|||+|.++..+++. ..+++++|. +.+++.+++ ..+++++.+|+.+ . . ..||+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 4589999999999999999984 468999999 888887764 3479999999976 2 2 249999974
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.21 E-value=2e-06 Score=75.15 Aligned_cols=160 Identities=16% Similarity=0.109 Sum_probs=89.7
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHH-HHHHHCCCCcEEEecc-hhHhhhCC----C--------------------
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALA-EIVKSYPHIKGINFDL-PHVVATAP----V-------------------- 227 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~-~l~~~~p~~~~~~~D~-~~~~~~a~----~-------------------- 227 (350)
+.+.+.+..+..++.++||||||.--+.. ..++.+. .++..|. +.-.+..+ +
T Consensus 44 ~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~--~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~ 121 (256)
T PF01234_consen 44 KNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFE--EIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKR 121 (256)
T ss_dssp HHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEE--EEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSS
T ss_pred HHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhc--ceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCc
Confidence 34445555334567899999999854432 1222222 3555565 33222110 0
Q ss_pred ----------CCCeE-EEeccCCC--CC------CC-ccEEEecchhccCC--hHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 228 ----------CEGIF-HVGGDMFD--AI------PK-ADAVFMKWILHDWD--DEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 228 ----------~~~i~-~~~~d~~~--~~------p~-~D~i~~~~vlh~~~--~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
...|+ ++..|+.+ |+ |+ ||++++..+|.... .++-...++++.++|| |||.|++...
T Consensus 122 ~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLk-pGG~Lil~~~ 200 (256)
T PF01234_consen 122 EKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLK-PGGHLILAGV 200 (256)
T ss_dssp SGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEE-EEEEEEEEEE
T ss_pred chhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcC-CCcEEEEEEE
Confidence 12244 67788887 22 33 99999999998754 4467789999999999 9999998775
Q ss_pred eecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEc---CC--ceeEEEEee
Q 018775 286 VVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISM---PA--LYSIIEAYP 349 (350)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~---~~--~~~vi~~~~ 349 (350)
.-...- ...-. .++ .-..+.+.+++.++++||.+.+...- .. ....+.|+|
T Consensus 201 l~~t~Y---------~vG~~---~F~-~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 201 LGSTYY---------MVGGH---KFP-CLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK 256 (256)
T ss_dssp SS-SEE---------EETTE---EEE----B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred cCceeE---------EECCE---ecc-cccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence 432210 00000 011 12236899999999999999888751 11 234566665
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.3e-06 Score=84.47 Aligned_cols=96 Identities=14% Similarity=0.134 Sum_probs=71.5
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------C-CCeEEEeccCCCC---CC-CccEEEec-
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------C-EGIFHVGGDMFDA---IP-KADAVFMK- 251 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~~i~~~~~d~~~~---~p-~~D~i~~~- 251 (350)
.+.+|||+|||+|.++..+++.. ..+++.+|. +.+++.+++ . ++++++.+|+++. .+ .||+|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 46899999999999999999863 346999999 888887764 2 5899999998762 22 59999983
Q ss_pred -chhc-----c-C-ChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 252 -WILH-----D-W-DDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 252 -~vlh-----~-~-~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
..-. . + ....-..+++.+.+.|+ |||.+++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~-~gG~l~~~ 655 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLR-PGGTLYFS 655 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcC-CCCEEEEE
Confidence 1110 0 0 02234578899999999 99988753
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.6e-06 Score=73.31 Aligned_cols=97 Identities=19% Similarity=0.182 Sum_probs=78.6
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-CCC--CccEEEecchhccCChH-
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-AIP--KADAVFMKWILHDWDDE- 260 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~~~~- 260 (350)
.+..++|+|||.|-+... +|.+..++.|+ ...+..+++.+.......|+.+ |.+ .+|.++...++||++..
T Consensus 45 ~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred CcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence 489999999999987632 47788999999 7777777765544667788888 655 49999999999999755
Q ss_pred HHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 261 ACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 261 ~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
....+++++.+.++ |||..+|.-...
T Consensus 121 RR~~~l~e~~r~lr-pgg~~lvyvwa~ 146 (293)
T KOG1331|consen 121 RRERALEELLRVLR-PGGNALVYVWAL 146 (293)
T ss_pred HHHHHHHHHHHHhc-CCCceEEEEehh
Confidence 46689999999999 999988865443
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.2e-06 Score=72.95 Aligned_cols=102 Identities=21% Similarity=0.282 Sum_probs=73.7
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCC-cEEEecc-hhHhhhCCC----CCCeE--EEeccCCC---CCCCccEEEecchh
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHI-KGINFDL-PHVVATAPV----CEGIF--HVGGDMFD---AIPKADAVFMKWIL 254 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~----~~~i~--~~~~d~~~---~~p~~D~i~~~~vl 254 (350)
.+.+|||+|+|.|..+-+....++.. +++.+|. +.+.+.++. ..... ....++.. ++++.|+|+++++|
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L 112 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL 112 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence 46799999999999888777777643 5788898 777776543 11111 11122221 34457999999999
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCC
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQED 290 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~ 290 (350)
..++++....+++++.+.+. + .|+|+|+-.+..
T Consensus 113 ~EL~~~~r~~lv~~LW~~~~-~--~LVlVEpGt~~G 145 (274)
T PF09243_consen 113 NELPSAARAELVRSLWNKTA-P--VLVLVEPGTPAG 145 (274)
T ss_pred hcCCchHHHHHHHHHHHhcc-C--cEEEEcCCChHH
Confidence 99999888899999999888 5 999999765543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.15 E-value=7e-06 Score=71.84 Aligned_cols=97 Identities=13% Similarity=0.109 Sum_probs=74.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--CC--------CC
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--AI--------PK 244 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~~--------p~ 244 (350)
..+..+||+||+++|.-+..+++.. ++.+++.+|. ++..+.|++ .++|+++.||..+ +. .+
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 3467899999999999999999876 4678999998 777666654 6899999998876 21 35
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
||+|++-. ....-...++.+.+.|+ |||.|++ |.++
T Consensus 157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~-~GGviv~-DNvl 192 (247)
T PLN02589 157 FDFIFVDA-----DKDNYINYHKRLIDLVK-VGGVIGY-DNTL 192 (247)
T ss_pred ccEEEecC-----CHHHhHHHHHHHHHhcC-CCeEEEE-cCCC
Confidence 99999732 23345678888999999 9988665 4443
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.3e-06 Score=75.04 Aligned_cols=96 Identities=19% Similarity=0.154 Sum_probs=71.7
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCC-CCC--CccEEEecchh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFD-AIP--KADAVFMKWIL 254 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~p--~~D~i~~~~vl 254 (350)
-.+..|||||||+|-++.--+++. ..++.++|-.++++.+.+ .+.|+++.|.+++ .+| ..|+|++.|.-
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 357899999999999999888876 568888888777776654 6779999999988 555 59999987766
Q ss_pred ccCC-hHHHHHHHHHHHhhCCCCCceEEE
Q 018775 255 HDWD-DEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 255 h~~~-~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
+.+- ..-...+|-.=-+.|+ |||.++=
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~-~~G~i~P 165 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLK-EGGLIYP 165 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccC-CCceEcc
Confidence 5532 2223344444456789 9998763
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.1e-05 Score=69.64 Aligned_cols=96 Identities=20% Similarity=0.335 Sum_probs=70.0
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CC-CeEEEeccCCC--C-C-C--CccEEEecch
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CE-GIFHVGGDMFD--A-I-P--KADAVFMKWI 253 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~-~i~~~~~d~~~--~-~-p--~~D~i~~~~v 253 (350)
...+||||||.|.+...+++++|+..++++++ ...+..+.+ .- ++.++++|... + + + +.|-|.+++
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F- 127 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF- 127 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC-
Confidence 46899999999999999999999999999998 555544432 33 89999999887 2 2 2 356555421
Q ss_pred hccCChHH-------HHHHHHHHHhhCCCCCceEEEEe
Q 018775 254 LHDWDDEA-------CVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 254 lh~~~~~~-------~~~~L~~~~~~L~~pgG~lli~e 284 (350)
---|+-.. ...+|+.+.+.|+ |||.|.+..
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk-~gG~l~~aT 164 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLK-PGGVLHFAT 164 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcc-CCCEEEEEe
Confidence 11132111 2378999999999 999998755
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.2e-05 Score=64.70 Aligned_cols=143 Identities=17% Similarity=0.110 Sum_probs=82.5
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhh-hCCCCCCeE-EEeccCCC-C---C----C
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVA-TAPVCEGIF-HVGGDMFD-A---I----P 243 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-~a~~~~~i~-~~~~d~~~-~---~----p 243 (350)
.+++.++ ....+.+|||+|||+|.++..+++. +..+++++|. +.++. ..+...++. +...|+.. . + +
T Consensus 65 ~~l~~~~-~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~ 142 (228)
T TIGR00478 65 EALEEFN-IDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFA 142 (228)
T ss_pred HHHHhcC-CCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCce
Confidence 4445444 1235779999999999999999986 3457999999 54554 455555554 33334442 1 1 2
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEE-EeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL-VEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM 322 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~ 322 (350)
.+|+.+.+.. .+|..+.+.|+ | |.+++ +.+-..-... .......+.|-.. ...-.+++.
T Consensus 143 ~~DvsfiS~~----------~~l~~i~~~l~-~-~~~~~L~KPqFE~~~~-~~~~~giv~~~~~-------~~~~~~~~~ 202 (228)
T TIGR00478 143 TFDVSFISLI----------SILPELDLLLN-P-NDLTLLFKPQFEAGRE-KKNKKGVVRDKEA-------IALALHKVI 202 (228)
T ss_pred eeeEEEeehH----------hHHHHHHHHhC-c-CeEEEEcChHhhhcHh-hcCcCCeecCHHH-------HHHHHHHHH
Confidence 3676666543 34888999999 9 65554 3222211110 0000011111100 111356777
Q ss_pred HHHHhcCCceeEEEEcC
Q 018775 323 KLLEQGGFHRCKIISMP 339 (350)
Q Consensus 323 ~ll~~aGf~~~~~~~~~ 339 (350)
..+.+.||++..+.+.|
T Consensus 203 ~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 203 DKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHcCCCeEeeEEECC
Confidence 78888999998887754
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.5e-06 Score=69.58 Aligned_cols=141 Identities=16% Similarity=0.175 Sum_probs=92.6
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCC--C--CeEEEeccCCC-CCC--CccEEEecchhcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVC--E--GIFHVGGDMFD-AIP--KADAVFMKWILHD 256 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~--~i~~~~~d~~~-~~p--~~D~i~~~~vlh~ 256 (350)
+....++|||||.|.....+..+. --+.+..|. -.|++.++.. + .+++..+|-+. ++. ++|+|+.+..+|-
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 456799999999999999999875 336777887 7788877652 3 34456677766 665 3999999999985
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCccc------CCHHHHHHHHHhcCC
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKE------RTEQEWMKLLEQGGF 330 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~s~~e~~~ll~~aGf 330 (350)
.+ +...-+.+++.+|| |+|.++- .+...+.- + .......+.-+-..+ |.. -...++-.+|..|||
T Consensus 150 ~N--dLPg~m~~ck~~lK-PDg~Fia--smlggdTL--y-ELR~slqLAelER~G-GiSphiSPf~qvrDiG~LL~rAGF 220 (325)
T KOG2940|consen 150 TN--DLPGSMIQCKLALK-PDGLFIA--SMLGGDTL--Y-ELRCSLQLAELEREG-GISPHISPFTQVRDIGNLLTRAGF 220 (325)
T ss_pred hc--cCchHHHHHHHhcC-CCccchh--HHhccccH--H-HHHHHhhHHHHHhcc-CCCCCcChhhhhhhhhhHHhhcCc
Confidence 33 35677899999999 9997763 22211110 0 001111111121222 221 145788999999999
Q ss_pred ceeEE
Q 018775 331 HRCKI 335 (350)
Q Consensus 331 ~~~~~ 335 (350)
....+
T Consensus 221 ~m~tv 225 (325)
T KOG2940|consen 221 SMLTV 225 (325)
T ss_pred cccee
Confidence 87665
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00017 Score=58.70 Aligned_cols=121 Identities=17% Similarity=0.305 Sum_probs=81.2
Q ss_pred cceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCC--CCCccEEEec--chhc
Q 018775 187 IQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDA--IPKADAVFMK--WILH 255 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~--~p~~D~i~~~--~vlh 255 (350)
..-++|||||+|..+..|++. .|+..+...|+ |++++.-.+ ..++..+..|+.+. ..+.|+++++ ++.-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 688999999999999998876 57888899999 887775432 44577888888873 2348888775 2222
Q ss_pred c------------CC-----hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCH
Q 018775 256 D------------WD-----DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTE 318 (350)
Q Consensus 256 ~------------~~-----~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 318 (350)
. |. .+-..++|..+-+.|. |.|.++++-. +.-..
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLS-p~Gv~Ylv~~----------------------------~~N~p 174 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILS-PRGVFYLVAL----------------------------RANKP 174 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcC-cCceEEeeeh----------------------------hhcCH
Confidence 1 11 1113355556666666 7777665321 11136
Q ss_pred HHHHHHHHhcCCceeEEE
Q 018775 319 QEWMKLLEQGGFHRCKII 336 (350)
Q Consensus 319 ~e~~~ll~~aGf~~~~~~ 336 (350)
+|+.+++++-||......
T Consensus 175 ~ei~k~l~~~g~~~~~~~ 192 (209)
T KOG3191|consen 175 KEILKILEKKGYGVRIAM 192 (209)
T ss_pred HHHHHHHhhcccceeEEE
Confidence 888889999999876553
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.8e-05 Score=69.58 Aligned_cols=88 Identities=11% Similarity=0.109 Sum_probs=68.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCCC-CCCccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFDA-IPKADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~~-~p~~D~i~~~ 251 (350)
.+.+.+||=||||-|..++++++. |. +++.+|+ +.+++.+++ ..|++++.. +.+. ...||+|+.-
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvD 146 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICL 146 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEc
Confidence 356899999999999999999996 54 8999999 888887765 678888762 3332 2359999975
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
.. .+ ..+.+.++++|+ |||.++.
T Consensus 147 s~----~~---~~fy~~~~~~L~-~~Gi~v~ 169 (262)
T PRK00536 147 QE----PD---IHKIDGLKRMLK-EDGVFIS 169 (262)
T ss_pred CC----CC---hHHHHHHHHhcC-CCcEEEE
Confidence 32 12 367899999999 9999876
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.04 E-value=8.8e-06 Score=71.52 Aligned_cols=100 Identities=22% Similarity=0.276 Sum_probs=74.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC---C-CC-CccE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD---A-IP-KADA 247 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~-~p-~~D~ 247 (350)
.+.+.+||=||+|.|..+..+++..+..+++.+|+ |.+++.+++ .+|++++.+|... . .. .||+
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 34689999999999999999988766678999999 888887764 4799999999875 2 33 5999
Q ss_pred EEecchhccCChHH--HHHHHHHHHhhCCCCCceEEEEe
Q 018775 248 VFMKWILHDWDDEA--CVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 248 i~~~~vlh~~~~~~--~~~~L~~~~~~L~~pgG~lli~e 284 (350)
|+.-..=-..+... ...+++.+++.|+ |||.+++..
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~-~~Gv~v~~~ 191 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLK-PDGVLVLQA 191 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEE-EEEEEEEEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcC-CCcEEEEEc
Confidence 99832211111111 3578999999999 999988754
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.8e-05 Score=64.72 Aligned_cols=125 Identities=22% Similarity=0.278 Sum_probs=89.2
Q ss_pred EEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCC--C-ccEEEecchhccCC
Q 018775 190 LADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIP--K-ADAVFMKWILHDWD 258 (350)
Q Consensus 190 vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p--~-~D~i~~~~vlh~~~ 258 (350)
|.||||-+|.+.+.|+++..--+++..|+ +..++.|++ .++|++..+|-++.++ + .|+|+.+.+ +
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999988888999998 777776654 6899999999888543 3 788877653 4
Q ss_pred hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 259 DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 259 ~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
-....++|.+....++ ...+|++ . +......++++|.+.||.+++=..+
T Consensus 77 G~lI~~ILe~~~~~~~-~~~~lIL-q-----------------------------P~~~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 77 GELIIEILEAGPEKLS-SAKRLIL-Q-----------------------------PNTHAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp HHHHHHHHHHTGGGGT-T--EEEE-E-----------------------------ESS-HHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHhhHHHhc-cCCeEEE-e-----------------------------CCCChHHHHHHHHHCCCEEEEeEEE
Confidence 5667889998888877 5555554 1 1112688899999999998875554
Q ss_pred ---CCceeEEEEee
Q 018775 339 ---PALYSIIEAYP 349 (350)
Q Consensus 339 ---~~~~~vi~~~~ 349 (350)
+-++-+|.+.+
T Consensus 126 ~e~~~~YeIi~~~~ 139 (205)
T PF04816_consen 126 EENGRFYEIIVAER 139 (205)
T ss_dssp EETTEEEEEEEEEE
T ss_pred eECCEEEEEEEEEe
Confidence 33566777765
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.1e-06 Score=80.42 Aligned_cols=99 Identities=22% Similarity=0.273 Sum_probs=68.2
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEe---cc-hhHhhhCCCCCCeEEEeccC-CC--CCCC--ccEEEecchhc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINF---DL-PHVVATAPVCEGIFHVGGDM-FD--AIPK--ADAVFMKWILH 255 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~i~~~~~d~-~~--~~p~--~D~i~~~~vlh 255 (350)
.....+||||||+|.++..|..+ ++....+ |. +..++.|.+ ..|..+-+-+ .+ |+|+ ||+|.|+.++.
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfale-RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALE-RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred CceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhh-cCcchhhhhhccccccCCccchhhhhcccccc
Confidence 44678999999999999999987 3333222 22 233444432 1133332322 12 6774 99999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
.|...+- .+|-++-|+|+ |||.++...+-..
T Consensus 193 ~W~~~~g-~~l~evdRvLR-pGGyfv~S~ppv~ 223 (506)
T PF03141_consen 193 PWHPNDG-FLLFEVDRVLR-PGGYFVLSGPPVY 223 (506)
T ss_pred cchhccc-ceeehhhhhhc-cCceEEecCCccc
Confidence 9988763 58889999999 9999987655444
|
; GO: 0008168 methyltransferase activity |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.1e-05 Score=68.88 Aligned_cols=104 Identities=10% Similarity=0.189 Sum_probs=76.8
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHC----CCCcEEEecc-hhHhhhCCC------CCCeEE--EeccCCC
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY----PHIKGINFDL-PHVVATAPV------CEGIFH--VGGDMFD 240 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~~~~~~a~~------~~~i~~--~~~d~~~ 240 (350)
..+...++ ++..++|+|||+|.=+..|++.. ...+++.+|+ .+.++.+.. ...+++ +.+|+.+
T Consensus 68 ~~Ia~~i~----~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 68 SDIAASIP----SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred HHHHHhcC----CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 34444444 56689999999998877776654 3467999998 566654432 345665 7888876
Q ss_pred C---CC------CccEE-EecchhccCChHHHHHHHHHHHh-hCCCCCceEEE
Q 018775 241 A---IP------KADAV-FMKWILHDWDDEACVKILKNCRQ-AIPDKSGKLVL 282 (350)
Q Consensus 241 ~---~p------~~D~i-~~~~vlh~~~~~~~~~~L~~~~~-~L~~pgG~lli 282 (350)
+ .+ ...++ ++..++.+++++++..+|+++++ .|+ ||+.|+|
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~-~~d~lLi 195 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALS-PSDSFLI 195 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCC-CCCEEEE
Confidence 2 21 14555 45689999999999999999999 999 9999888
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=5e-05 Score=65.74 Aligned_cols=96 Identities=18% Similarity=0.195 Sum_probs=69.2
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC----CCC----CccEEE
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD----AIP----KADAVF 249 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~----~~p----~~D~i~ 249 (350)
.+..+||+|||+|..+..++...|..+++.+|. +.++..|.+ .+++.+++.++.. +.+ .+|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 456899999999999999999999999999998 666655543 7889988665544 322 389988
Q ss_pred ec--chhccC----------------------ChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 250 MK--WILHDW----------------------DDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 250 ~~--~vlh~~----------------------~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
++ ++.++= .-+....++.-+.+.|+ |||.+.+
T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq-~gg~~~l 283 (328)
T KOG2904|consen 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQ-PGGFEQL 283 (328)
T ss_pred cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcc-cCCeEEE
Confidence 85 444430 01123455666778889 9887765
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.5e-05 Score=65.34 Aligned_cols=116 Identities=17% Similarity=0.069 Sum_probs=78.6
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCCCCccEEEecchhccCC
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAIPKADAVFMKWILHDWD 258 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~p~~D~i~~~~vlh~~~ 258 (350)
-.+.+|+|+|||||.+++..+-..| .+++++|+ |++++.+++ ..++.|+..|+.+.-..+|.++++-=+--+-
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~ 122 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQR 122 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCcccc
Confidence 3578999999999999988777654 47888998 898888775 5689999999998555688887742221111
Q ss_pred -hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEE
Q 018775 259 -DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKI 335 (350)
Q Consensus 259 -~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~ 335 (350)
..| ..+|.++.++-+ .++- . .+.-+.+-+.+..++.|+++...
T Consensus 123 rhaD-r~Fl~~Ale~s~----vVYs--------------------------i---H~a~~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 123 RHAD-RPFLLKALEISD----VVYS--------------------------I---HKAGSRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred ccCC-HHHHHHHHHhhh----eEEE--------------------------e---eccccHHHHHHHHHhcCCeEEEE
Confidence 111 345555555533 1110 0 11225788889999999887665
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.9e-05 Score=76.65 Aligned_cols=98 Identities=16% Similarity=0.283 Sum_probs=70.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC-C-----CCCeEEEeccCCC---CCC--CccEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP-V-----CEGIFHVGGDMFD---AIP--KADAVFMKW 252 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-~-----~~~i~~~~~d~~~---~~p--~~D~i~~~~ 252 (350)
.....+||||||.|.++..+++++|+..++++|. ...+..+. + -.++.++++|+.. .+| +.|.|++.+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F 425 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF 425 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence 3578999999999999999999999999999998 44333322 1 4577888887643 344 277766532
Q ss_pred hhccCChHH-------HHHHHHHHHhhCCCCCceEEEEe
Q 018775 253 ILHDWDDEA-------CVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 253 vlh~~~~~~-------~~~~L~~~~~~L~~pgG~lli~e 284 (350)
---|+... ...+|+.++++|+ |||.|.+..
T Consensus 426 -PDPWpKkrh~krRl~~~~fl~~~~~~Lk-~gG~i~~~T 462 (506)
T PRK01544 426 -PDPWIKNKQKKKRIFNKERLKILQDKLK-DNGNLVFAS 462 (506)
T ss_pred -CCCCCCCCCccccccCHHHHHHHHHhcC-CCCEEEEEc
Confidence 11132111 2478999999999 999998744
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.5e-05 Score=65.26 Aligned_cols=88 Identities=17% Similarity=0.193 Sum_probs=66.9
Q ss_pred eEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CC-CCccEEEecchhccCCh
Q 018775 189 SLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AI-PKADAVFMKWILHDWDD 259 (350)
Q Consensus 189 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~-p~~D~i~~~~vlh~~~~ 259 (350)
+++|||+|.|.-++-|+=.+|+.+++.+|. ..-+...+. -.+++++++.+++ .. ..||+|++..+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~---- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP---- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence 899999999999999999999999999996 432222221 4579999998888 33 3599999977653
Q ss_pred HHHHHHHHHHHhhCCCCCceEEEE
Q 018775 260 EACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 260 ~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
...+++-+...++ +||+++..
T Consensus 127 --l~~l~~~~~~~l~-~~G~~l~~ 147 (184)
T PF02527_consen 127 --LDKLLELARPLLK-PGGRLLAY 147 (184)
T ss_dssp --HHHHHHHHGGGEE-EEEEEEEE
T ss_pred --HHHHHHHHHHhcC-CCCEEEEE
Confidence 3467888889999 99999864
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.2e-05 Score=67.82 Aligned_cols=74 Identities=19% Similarity=0.390 Sum_probs=60.1
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP 243 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p 243 (350)
...+++.-+ .++...||+||.|||.++..|+++.. +++.+++ |.++...++ +.+.+++.||+++ +.|
T Consensus 47 ~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P 122 (315)
T KOG0820|consen 47 IDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP 122 (315)
T ss_pred HHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence 455666666 78899999999999999999999854 5666666 777665543 5789999999999 889
Q ss_pred CccEEEe
Q 018775 244 KADAVFM 250 (350)
Q Consensus 244 ~~D~i~~ 250 (350)
.||+++.
T Consensus 123 ~fd~cVs 129 (315)
T KOG0820|consen 123 RFDGCVS 129 (315)
T ss_pred ccceeec
Confidence 9999887
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.5e-05 Score=76.23 Aligned_cols=90 Identities=11% Similarity=0.176 Sum_probs=64.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCC-----C-C-CccEEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDA-----I-P-KADAVF 249 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~-----~-p-~~D~i~ 249 (350)
..+..+|||+|||+|.++..+++.. .+++++|. +++++.+++ ..+++++.+|+.+. . . .||+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 4567899999999999999999874 37899999 888887764 35799999998651 1 1 389998
Q ss_pred ecchhccCChHH-HHHHHHHHHhhCCCCCceEEE
Q 018775 250 MKWILHDWDDEA-CVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 250 ~~~vlh~~~~~~-~~~~L~~~~~~L~~pgG~lli 282 (350)
+.- |..- ...+++.+.+ ++ |++.+++
T Consensus 368 ~dP-----Pr~G~~~~~l~~l~~-l~-~~~ivyv 394 (431)
T TIGR00479 368 LDP-----PRKGCAAEVLRTIIE-LK-PERIVYV 394 (431)
T ss_pred ECc-----CCCCCCHHHHHHHHh-cC-CCEEEEE
Confidence 721 1111 2355665554 78 8876655
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00013 Score=62.02 Aligned_cols=119 Identities=20% Similarity=0.212 Sum_probs=84.6
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhh---CCC---CCCeEEEeccCCC-C-CCC-ccEEEecchhcc
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVAT---APV---CEGIFHVGGDMFD-A-IPK-ADAVFMKWILHD 256 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~~---~~~i~~~~~d~~~-~-~p~-~D~i~~~~vlh~ 256 (350)
..+++|||+|.|.-++-++=.+|+.+++.+|. ..-+.. +.. -++++++++.+++ . .+. ||+|++..+-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 68999999999999999998899999999995 333322 222 5679999998887 3 345 99999876543
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEE
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII 336 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~ 336 (350)
...++.=+...++ +||.+++.-. .. ++. -..+.+.....-|+.+.++.
T Consensus 147 -----L~~l~e~~~pllk-~~g~~~~~k~---------------------~~----~~~-e~~e~~~a~~~~~~~~~~~~ 194 (215)
T COG0357 147 -----LNVLLELCLPLLK-VGGGFLAYKG---------------------LA----GKD-ELPEAEKAILPLGGQVEKVF 194 (215)
T ss_pred -----hHHHHHHHHHhcc-cCCcchhhhH---------------------Hh----hhh-hHHHHHHHHHhhcCcEEEEE
Confidence 2345666777788 9887653110 00 000 14666677788899998887
Q ss_pred Ec
Q 018775 337 SM 338 (350)
Q Consensus 337 ~~ 338 (350)
..
T Consensus 195 ~~ 196 (215)
T COG0357 195 SL 196 (215)
T ss_pred Ee
Confidence 75
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=9.7e-05 Score=62.51 Aligned_cols=127 Identities=19% Similarity=0.229 Sum_probs=88.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--------CCCeEEEeccCCC---CCC--CccEEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--------CEGIFHVGGDMFD---AIP--KADAVF 249 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~---~~p--~~D~i~ 249 (350)
.+.+.+|||...|-|.++++.+++.. ..++.++- |.+++.|.- ..+|+++.||..+ +++ +||+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 45689999999999999999888753 25555555 889887764 3478999999987 455 399987
Q ss_pred ecchhccCC------hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHH
Q 018775 250 MKWILHDWD------DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMK 323 (350)
Q Consensus 250 ~~~vlh~~~------~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ 323 (350)
|+-| .=-..++-++++++|+ |||+++=. +-.+... . . |.. -.....+
T Consensus 211 -----HDPPRfS~AgeLYseefY~El~RiLk-rgGrlFHY--vG~Pg~r--------y---------r-G~d-~~~gVa~ 263 (287)
T COG2521 211 -----HDPPRFSLAGELYSEEFYRELYRILK-RGGRLFHY--VGNPGKR--------Y---------R-GLD-LPKGVAE 263 (287)
T ss_pred -----eCCCccchhhhHhHHHHHHHHHHHcC-cCCcEEEE--eCCCCcc--------c---------c-cCC-hhHHHHH
Confidence 3311 1124578999999999 99998732 2211110 0 0 111 2466778
Q ss_pred HHHhcCCceeEEEEc
Q 018775 324 LLEQGGFHRCKIISM 338 (350)
Q Consensus 324 ll~~aGf~~~~~~~~ 338 (350)
.|+++||.+++....
T Consensus 264 RLr~vGF~~v~~~~~ 278 (287)
T COG2521 264 RLRRVGFEVVKKVRE 278 (287)
T ss_pred HHHhcCceeeeeehh
Confidence 899999998876654
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.9e-05 Score=65.47 Aligned_cols=96 Identities=16% Similarity=0.094 Sum_probs=62.3
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-C--C-C-ccEEEe
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-I--P-K-ADAVFM 250 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~--p-~-~D~i~~ 250 (350)
.+.+|||++||+|.+++.++.+... +++.+|. +.+++.+++ .++++++.+|+++ . . . . +|+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4689999999999999999998653 7888898 777765543 3578999999965 1 1 1 2 677777
Q ss_pred cchhccCChHHHHHHHHHH--HhhCCCCCceEEEEeeee
Q 018775 251 KWILHDWDDEACVKILKNC--RQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 251 ~~vlh~~~~~~~~~~L~~~--~~~L~~pgG~lli~e~~~ 287 (350)
---... .....++..+ ...|+ ++| +++.|...
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~-~~~-iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILE-DTV-LIVVEEDR 161 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCC-CCe-EEEEEecC
Confidence 322211 1122334433 34567 666 45555443
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.4e-05 Score=72.24 Aligned_cols=89 Identities=11% Similarity=0.063 Sum_probs=62.3
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C--C-CCccEEEecchh
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A--I-PKADAVFMKWIL 254 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~-p~~D~i~~~~vl 254 (350)
++.+|||+|||+|.++..++.. ..+++++|. +.+++.+++ .++++++.+|+.+ . . ..||+|++.-
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DP-- 308 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNP-- 308 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECC--
Confidence 4579999999999999999864 468999998 888887664 3479999999876 2 1 3499998831
Q ss_pred ccCChH-HHHHHHHHHHhhCCCCCceEEEE
Q 018775 255 HDWDDE-ACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 255 h~~~~~-~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
|.. -...+++.+. .++ |++.+++.
T Consensus 309 ---Pr~G~~~~~l~~l~-~~~-p~~ivyvs 333 (374)
T TIGR02085 309 ---PRRGIGKELCDYLS-QMA-PKFILYSS 333 (374)
T ss_pred ---CCCCCcHHHHHHHH-hcC-CCeEEEEE
Confidence 111 0124445454 368 88766653
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.1e-05 Score=64.07 Aligned_cols=94 Identities=19% Similarity=0.136 Sum_probs=69.2
Q ss_pred CcceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---------CCCeEEEeccCCCC-----CCCccEEE
Q 018775 186 SIQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPV---------CEGIFHVGGDMFDA-----IPKADAVF 249 (350)
Q Consensus 186 ~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~~-----~p~~D~i~ 249 (350)
.+.+||++||| +|..+..++..-|...+.+.|- +..++..++ ..++.++..+.... +..||.|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 46899999999 5555666677778888888887 666665543 34555555555542 12499999
Q ss_pred ecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 250 MKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 250 ~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
+..++.. ++-...+.+.++..|+ |.|+-++
T Consensus 109 aADClFf--dE~h~sLvdtIk~lL~-p~g~Al~ 138 (201)
T KOG3201|consen 109 AADCLFF--DEHHESLVDTIKSLLR-PSGRALL 138 (201)
T ss_pred eccchhH--HHHHHHHHHHHHHHhC-cccceeE
Confidence 9988876 6667789999999999 9998655
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.9e-05 Score=64.83 Aligned_cols=91 Identities=12% Similarity=0.267 Sum_probs=64.5
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC----CCCeEEEeccCCC-CCCC---
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV----CEGIFHVGGDMFD-AIPK--- 244 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~~~i~~~~~d~~~-~~p~--- 244 (350)
.+.+++... ..++..|+|||+|.|.++..|+++...+.++-+| +..++..++ .++++++.+|+.+ +++.
T Consensus 19 ~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD-~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~ 95 (259)
T COG0030 19 IDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAARVTAIEID-RRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQ 95 (259)
T ss_pred HHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeC-HHHHHHHHHhcccccceEEEeCchhcCcchhhcC
Confidence 456666666 5668999999999999999999987654444444 555554443 6889999999999 8874
Q ss_pred ccEEEecchhccCChHHHHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILK 267 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~ 267 (350)
++. +.++.-++++.+-..+++.
T Consensus 96 ~~~-vVaNlPY~Isspii~kll~ 117 (259)
T COG0030 96 PYK-VVANLPYNISSPILFKLLE 117 (259)
T ss_pred CCE-EEEcCCCcccHHHHHHHHh
Confidence 344 4456677766654444444
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.1e-05 Score=68.03 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=63.1
Q ss_pred hHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-C--C
Q 018775 172 VMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-A--I 242 (350)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~--~ 242 (350)
+..++++.+. ..++..+||.+||.|..+..+++.+| +.+++++|. +++++.+++ .++++++.+|+.+ . .
T Consensus 7 ll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 7 LLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred cHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHH
Confidence 4566777776 56778999999999999999999986 789999999 999888765 3589999999886 1 1
Q ss_pred ----CCccEEEec
Q 018775 243 ----PKADAVFMK 251 (350)
Q Consensus 243 ----p~~D~i~~~ 251 (350)
+.+|.|++-
T Consensus 85 ~~~~~~vDgIl~D 97 (296)
T PRK00050 85 AEGLGKVDGILLD 97 (296)
T ss_pred HcCCCccCEEEEC
Confidence 148888773
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00062 Score=60.09 Aligned_cols=135 Identities=16% Similarity=0.123 Sum_probs=90.4
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhH-------hhh---C----------------------C-----
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHV-------VAT---A----------------------P----- 226 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~-------~~~---a----------------------~----- 226 (350)
....+||-=|||.|+++..+++.. ..+.+.+. -.| +.. . +
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~G--~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKLG--YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhcc--ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 457899999999999999999983 34444443 111 110 0 0
Q ss_pred ---------CCCCeEEEeccCCC--CCC----CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCC
Q 018775 227 ---------VCEGIFHVGGDMFD--AIP----KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDG 291 (350)
Q Consensus 227 ---------~~~~i~~~~~d~~~--~~p----~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~ 291 (350)
...+++...|||.+ +.+ .||+|+..+++-- .+.+.+.|+.++++|| |||..+=+-+..-.-.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLk-pgG~WIN~GPLlyh~~ 209 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLK-PGGYWINFGPLLYHFE 209 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhc-cCCEEEecCCccccCC
Confidence 03578889999998 333 4999999877753 5568899999999999 9996553332222111
Q ss_pred CCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEE
Q 018775 292 NNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~ 337 (350)
. .. ......-+.+.+|+.++.++.||++++-..
T Consensus 210 ~-----------~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 210 P-----------MS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred C-----------CC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0 00 000012567899999999999999987654
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00052 Score=59.49 Aligned_cols=99 Identities=18% Similarity=0.263 Sum_probs=73.3
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p 243 (350)
..++..++ ..++.+||+-|.|+|.++.++++. .|.-+...+|. ..-.+.|.+ .+++++.+.|+-. .++
T Consensus 95 a~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 95 AMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 34566677 889999999999999999999997 47778888887 444444433 7899999999988 343
Q ss_pred ----CccEEEecchhccCChHHHHHHHHHHHhhCCCCC-ceEEE
Q 018775 244 ----KADAVFMKWILHDWDDEACVKILKNCRQAIPDKS-GKLVL 282 (350)
Q Consensus 244 ----~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pg-G~lli 282 (350)
.+|.|++ ++|.+. ..+-.++.+|+ .+ |+|+-
T Consensus 173 ~ks~~aDaVFL-----DlPaPw--~AiPha~~~lk-~~g~r~cs 208 (314)
T KOG2915|consen 173 IKSLKADAVFL-----DLPAPW--EAIPHAAKILK-DEGGRLCS 208 (314)
T ss_pred ccccccceEEE-----cCCChh--hhhhhhHHHhh-hcCceEEe
Confidence 2999987 566553 33666777888 55 46654
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=2.2e-05 Score=65.01 Aligned_cols=146 Identities=14% Similarity=0.185 Sum_probs=84.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEE-eccCCCCCCCccEEEecchhccCChHHH
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHV-GGDMFDAIPKADAVFMKWILHDWDDEAC 262 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~-~~d~~~~~p~~D~i~~~~vlh~~~~~~~ 262 (350)
+.+.++||+|+|.|..+..++..+.. +...++ ..|..+.++.. ..+. .-+-.+.--.+|+|.|.++|.---+ .
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~kk~-ynVl~~~ew~~t~~k~dli~clNlLDRc~~--p 185 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKKKN-YNVLTEIEWLQTDVKLDLILCLNLLDRCFD--P 185 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhhcC-CceeeehhhhhcCceeehHHHHHHHHhhcC--h
Confidence 34689999999999999998887654 333344 56666665411 1111 1122221114999999999864222 3
Q ss_pred HHHHHHHHhhCCCC-CceEEEEeeeecCCCCC-cccccchhhhhhHhhhcCCcccC--CHHHHHHHHHhcCCceeEEEEc
Q 018775 263 VKILKNCRQAIPDK-SGKLVLVEIVVQEDGNN-IFGDMGLVFDLVMFAHTTGGKER--TEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 263 ~~~L~~~~~~L~~p-gG~lli~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
-++|+.++.+|+ | +|++++.=...-..-.+ +......--| ..+. .+ |+.+ ....+-++|+++||.+.....+
T Consensus 186 ~kLL~Di~~vl~-psngrvivaLVLP~~hYVE~N~~g~~~rPd-n~Le-~~-Gr~~ee~v~~~~e~lr~~g~~veawTrl 261 (288)
T KOG3987|consen 186 FKLLEDIHLVLA-PSNGRVIVALVLPYMHYVETNTSGLPLRPD-NLLE-NN-GRSFEEEVARFMELLRNCGYRVEAWTRL 261 (288)
T ss_pred HHHHHHHHHHhc-cCCCcEEEEEEecccceeecCCCCCcCCch-HHHH-hc-CccHHHHHHHHHHHHHhcCchhhhhhcC
Confidence 588999999999 8 89887643222111110 0000001011 1111 22 3322 2345678899999998776555
Q ss_pred C
Q 018775 339 P 339 (350)
Q Consensus 339 ~ 339 (350)
|
T Consensus 262 P 262 (288)
T KOG3987|consen 262 P 262 (288)
T ss_pred C
Confidence 4
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00022 Score=63.08 Aligned_cols=96 Identities=21% Similarity=0.292 Sum_probs=57.4
Q ss_pred CcceEEEecCCchHH-HHHHHHH-CCCCcEEEecc-hhHhhhCCC--------CCCeEEEeccCCC-C--CCCccEEEec
Q 018775 186 SIQSLADVGGGTGGA-LAEIVKS-YPHIKGINFDL-PHVVATAPV--------CEGIFHVGGDMFD-A--IPKADAVFMK 251 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~-~~~l~~~-~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~-~--~p~~D~i~~~ 251 (350)
.+.+|+=||||.=-+ ++.+++. .++..++++|+ +++++.+++ ..+++|+.+|... + ..+||+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 357999999996544 4556654 46788999999 887776653 6899999999876 3 4569999887
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
...- ...++-.++|.++.+.++ ||.++++-
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~-~ga~l~~R 229 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMA-PGARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS--TTSEEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCC-CCcEEEEe
Confidence 6554 233445789999999999 99988763
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0001 Score=68.95 Aligned_cols=90 Identities=17% Similarity=0.048 Sum_probs=69.5
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC--C-CCCccEEEecchhcc
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD--A-IPKADAVFMKWILHD 256 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~--~-~p~~D~i~~~~vlh~ 256 (350)
..+|||++||+|.+++.++...+..++++.|. +..++.+++ .+.+++..+|... . .+.||+|++.-.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 46899999999999999998876568999999 888887654 3456688899866 2 235999998431
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
.. ...++..+.+.++ |||.+.+.
T Consensus 135 -Gs--~~~~l~~al~~~~-~~gilyvS 157 (382)
T PRK04338 135 -GS--PAPFLDSAIRSVK-RGGLLCVT 157 (382)
T ss_pred -CC--cHHHHHHHHHHhc-CCCEEEEE
Confidence 11 2357788778889 99999997
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=7.2e-05 Score=61.85 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=68.3
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------------CCCeEEEeccCCCCCCC-ccE---
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------------CEGIFHVGGDMFDAIPK-ADA--- 247 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~i~~~~~d~~~~~p~-~D~--- 247 (350)
....+.|||||-|.++..|+..||+.-+.++++ -.+.+..++ ..++.+...+.+.-.|+ |.-
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 457899999999999999999999999999987 555543322 35677777776663343 221
Q ss_pred ---EEecchhccCChHH-----HHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 248 ---VFMKWILHDWDDEA-----CVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 248 ---i~~~~vlh~~~~~~-----~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
.++.---|.+.... ...++.+..-+|+ +||.++.+..+.
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~-~gg~~ytitDv~ 186 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLR-EGGILYTITDVK 186 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhh-cCceEEEEeeHH
Confidence 22222233322111 2367888889999 999999876544
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00075 Score=55.58 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=84.9
Q ss_pred CCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecchhHhhhC-----------CC--CCCeEEEeccCCC-CCC-CccE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDLPHVVATA-----------PV--CEGIFHVGGDMFD-AIP-KADA 247 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a-----------~~--~~~i~~~~~d~~~-~~p-~~D~ 247 (350)
++++.+|+|+=.|.|.++.-+... .|.-.++.+-..+....+ ++ ..+++.+..+... ..| +.|+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~ 125 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL 125 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence 889999999999999999887764 233333332212221111 11 2344444444444 323 3777
Q ss_pred EEecchhccC-----ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH
Q 018775 248 VFMKWILHDW-----DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM 322 (350)
Q Consensus 248 i~~~~vlh~~-----~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~ 322 (350)
++....-|++ +...+.++-+.++++|| |||.++|.|......... .+-..+ ...+..-..
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LK-PGGv~~V~dH~a~pG~~~--------~dt~~~------~ri~~a~V~ 190 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALK-PGGVYLVEDHRADPGSGL--------SDTITL------HRIDPAVVI 190 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcC-CCcEEEEEeccccCCCCh--------hhhhhh------cccChHHHH
Confidence 7775443332 34457789999999999 999999999877664432 111111 122467777
Q ss_pred HHHHhcCCceeEEE
Q 018775 323 KLLEQGGFHRCKII 336 (350)
Q Consensus 323 ~ll~~aGf~~~~~~ 336 (350)
+..+.+||+...-.
T Consensus 191 a~veaaGFkl~aeS 204 (238)
T COG4798 191 AEVEAAGFKLEAES 204 (238)
T ss_pred HHHHhhcceeeeee
Confidence 88899999876543
|
|
| >PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=97.60 E-value=3.4e-05 Score=50.28 Aligned_cols=47 Identities=26% Similarity=0.481 Sum_probs=40.6
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+.|++.|...++++|+.|||+++|+ +...+.|+|..|+..|++++++
T Consensus 6 l~iL~~l~~~~~~~t~~eia~~~gl---~~stv~r~L~tL~~~g~v~~dp 52 (52)
T PF09339_consen 6 LRILEALAESGGPLTLSEIARALGL---PKSTVHRLLQTLVEEGYVERDP 52 (52)
T ss_dssp HHHHHCHHCTBSCEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEECS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCcCeecCc
Confidence 4577888776677899999999999 8899999999999999999873
|
One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.57 E-value=4.9e-05 Score=64.29 Aligned_cols=90 Identities=21% Similarity=0.208 Sum_probs=65.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC-CccEEEecch
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP-KADAVFMKWI 253 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p-~~D~i~~~~v 253 (350)
..++..|+|+-||.|.+++.+++..+...++..|+ |..++.+++ .++|..+.+|..+ ... .+|-|++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l- 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL- 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE---
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC-
Confidence 35689999999999999999999777788999999 888776553 6789999999988 323 499888854
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceE
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKL 280 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~l 280 (350)
| +.+..+|..+.+.++ +||.+
T Consensus 178 ----p-~~~~~fl~~~~~~~~-~~g~i 198 (200)
T PF02475_consen 178 ----P-ESSLEFLDAALSLLK-EGGII 198 (200)
T ss_dssp ----T-SSGGGGHHHHHHHEE-EEEEE
T ss_pred ----h-HHHHHHHHHHHHHhc-CCcEE
Confidence 2 123467888999999 88765
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00085 Score=56.45 Aligned_cols=106 Identities=19% Similarity=0.227 Sum_probs=73.7
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecchhHhhhCCCCCCeEEEeccCCCC-C--------
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDLPHVVATAPVCEGIFHVGGDMFDA-I-------- 242 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~-~-------- 242 (350)
..++.+.+. .+.++.+|+|+|+..|+.+..+++.. ++..++++|+.++-... .|.++.+|++.+ .
T Consensus 33 L~el~~k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~----~V~~iq~d~~~~~~~~~l~~~l 107 (205)
T COG0293 33 LLELNEKFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIP----GVIFLQGDITDEDTLEKLLEAL 107 (205)
T ss_pred HHHHHHhcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCC----CceEEeeeccCccHHHHHHHHc
Confidence 345666664 57889999999999999999888864 45568999985554333 399999999983 2
Q ss_pred C--CccEEEec---chhccCC------hHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 243 P--KADAVFMK---WILHDWD------DEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 243 p--~~D~i~~~---~vlh~~~------~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+ ++|+|++- ++=-++. ..-+...+.-+..+|+ |||.+++-.
T Consensus 108 ~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~-~~G~fv~K~ 159 (205)
T COG0293 108 GGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLK-PGGSFVAKV 159 (205)
T ss_pred CCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeC-CCCeEEEEE
Confidence 2 26999852 2211221 1224456667778999 999998744
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0018 Score=57.39 Aligned_cols=138 Identities=11% Similarity=0.152 Sum_probs=91.1
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEec---------------c-------hhHhh---------hCC--------
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFD---------------L-------PHVVA---------TAP-------- 226 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D---------------~-------~~~~~---------~a~-------- 226 (350)
...+||-=|||.|.++..|+..++.+++--+. . |-+.. +.+
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 36899999999999999999988766542100 0 00000 000
Q ss_pred ------CCCCeEEEeccCCC--CCC----CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCc
Q 018775 227 ------VCEGIFHVGGDMFD--AIP----KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNI 294 (350)
Q Consensus 227 ------~~~~i~~~~~d~~~--~~p----~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~ 294 (350)
..+..+.-+|||.+ +.+ .||+|+.++++-- ...+.+.|+.++..|+ |||..+=+.+..-.-....
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT--a~NileYi~tI~~iLk-~GGvWiNlGPLlYHF~d~~ 306 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT--AHNILEYIDTIYKILK-PGGVWINLGPLLYHFEDTH 306 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec--hHHHHHHHHHHHHhcc-CCcEEEeccceeeeccCCC
Confidence 02345557799998 333 3999988876653 4567899999999999 9999876555443322110
Q ss_pred ccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 295 FGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
+. ..-. +-+.+.+++..+.+.-||++++-..+
T Consensus 307 --------g~---~~~~-siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 307 --------GV---ENEM-SIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred --------CC---cccc-cccccHHHHHHHHHhcCcEEEEeeee
Confidence 00 0011 45668999999999999999876644
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.48 E-value=9.1e-05 Score=68.76 Aligned_cols=51 Identities=10% Similarity=0.156 Sum_probs=42.8
Q ss_pred ceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC
Q 018775 188 QSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD 240 (350)
Q Consensus 188 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~ 240 (350)
.+|||++||+|.++..+++... +++++|. +++++.+++ .++++++.+|..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999988763 7999998 888887765 3468999998865
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00075 Score=64.71 Aligned_cols=102 Identities=16% Similarity=0.200 Sum_probs=72.1
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhCCC------CCCeEEEeccCCC---CCC-CccEEEe-
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATAPV------CEGIFHVGGDMFD---AIP-KADAVFM- 250 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~---~~p-~~D~i~~- 250 (350)
..++.+|||+++|.|.=+..++....+ ..++..|+ +.-++.+++ ..++.+...|... .++ .||.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 467889999999999999999998654 47788887 555544432 3567788888765 234 3999994
Q ss_pred ---c--chhc-------cCChHHH-------HHHHHHHHhhCCCCCceEEEEeee
Q 018775 251 ---K--WILH-------DWDDEAC-------VKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 251 ---~--~vlh-------~~~~~~~-------~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
+ .++. .|+.+++ .++|+++.+.|+ |||+|+-....
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lk-pGG~LVYSTCT 244 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALK-PGGTLVYSTCT 244 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcC-CCcEEEEECCC
Confidence 3 2222 2333322 589999999999 99998655543
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00026 Score=59.32 Aligned_cols=104 Identities=16% Similarity=0.180 Sum_probs=62.7
Q ss_pred HHHHHhcccC-CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecchhHhhhCCCCCCeEEEeccCCCC---------C
Q 018775 174 KALVSHYKDG-FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDLPHVVATAPVCEGIFHVGGDMFDA---------I 242 (350)
Q Consensus 174 ~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~---------~ 242 (350)
.++.+.++.. ..+..+|||+||++|.++..++++. +..+++++|+..... ...+.++.+|+.++ .
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~----~~~~~~i~~d~~~~~~~~~i~~~~ 85 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP----LQNVSFIQGDITNPENIKDIRKLL 85 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccccc----ccceeeeecccchhhHHHhhhhhc
Confidence 3455555511 2246999999999999999999987 678999999843311 13344445554431 1
Q ss_pred ----CCccEEEecch---hcc------CChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 243 ----PKADAVFMKWI---LHD------WDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 243 ----p~~D~i~~~~v---lh~------~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
..+|+|++--. -.+ ...+-+...|.-+.+.|+ |||.+++
T Consensus 86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~-~gG~~v~ 137 (181)
T PF01728_consen 86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLK-PGGTFVI 137 (181)
T ss_dssp GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHC-TTEEEEE
T ss_pred cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhc-CCCEEEE
Confidence 24899988431 111 011223445555667789 9998876
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0013 Score=55.04 Aligned_cols=100 Identities=16% Similarity=0.110 Sum_probs=74.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-----CCCeEEEeccCCC---CCCC--ccEEEecchh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-----CEGIFHVGGDMFD---AIPK--ADAVFMKWIL 254 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~i~~~~~d~~~---~~p~--~D~i~~~~vl 254 (350)
.++.+||.||=|-|-....+.++-|..+.++---|.+.++.+. ..+|....|-..+ .+|+ ||-|..--.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 5789999999999999988888888877776655999888775 5677777764443 4453 9988774332
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
.+ -++...+-+.+.++|| |+|++-...-..
T Consensus 180 e~--yEdl~~~hqh~~rLLk-P~gv~SyfNg~~ 209 (271)
T KOG1709|consen 180 EL--YEDLRHFHQHVVRLLK-PEGVFSYFNGLG 209 (271)
T ss_pred hH--HHHHHHHHHHHhhhcC-CCceEEEecCcc
Confidence 22 3567888999999999 999886654433
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00044 Score=61.52 Aligned_cols=95 Identities=13% Similarity=0.233 Sum_probs=67.0
Q ss_pred hHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCCC-
Q 018775 172 VMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIPK- 244 (350)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p~- 244 (350)
.++.+++.++ ..++..|+|||+|.|.++..|++.. .++++++. +..++..++ ..+++++.+|+.+ +.+.
T Consensus 18 ~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 18 IADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH
T ss_pred HHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh
Confidence 3456777777 6689999999999999999999987 57777877 666665543 6899999999998 5443
Q ss_pred ---ccEEEecchhccCChHHHHHHHHHHHhhCC
Q 018775 245 ---ADAVFMKWILHDWDDEACVKILKNCRQAIP 274 (350)
Q Consensus 245 ---~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~ 274 (350)
-.+.+.++.-++.+ ..++.++...-+
T Consensus 94 ~~~~~~~vv~NlPy~is----~~il~~ll~~~~ 122 (262)
T PF00398_consen 94 LKNQPLLVVGNLPYNIS----SPILRKLLELYR 122 (262)
T ss_dssp CSSSEEEEEEEETGTGH----HHHHHHHHHHGG
T ss_pred hcCCceEEEEEecccch----HHHHHHHhhccc
Confidence 33445555555433 356666666444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.001 Score=60.03 Aligned_cols=92 Identities=27% Similarity=0.395 Sum_probs=72.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------------CCCeEEEeccCCCC---C-CCc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------------CEGIFHVGGDMFDA---I-PKA 245 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------------~~~i~~~~~d~~~~---~-p~~ 245 (350)
++..+||=+|||.|..+.++.+ +| -.+++.+|+ |.|++.++. ..|++++..|.++- - ..|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 5678999999999999999887 68 558899999 999998873 57999999999982 1 249
Q ss_pred cEEEecchhccCChHH--------HHHHHHHHHhhCCCCCceEEEE
Q 018775 246 DAVFMKWILHDWDDEA--------CVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~--------~~~~L~~~~~~L~~pgG~lli~ 283 (350)
|+++. +++|+. ..++-+-+++.|+ ++|.+++.
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~-e~Gl~VvQ 406 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLA-ETGLMVVQ 406 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcC-cCceEEEe
Confidence 98886 344332 2466778889999 99998873
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00015 Score=67.50 Aligned_cols=51 Identities=12% Similarity=0.187 Sum_probs=42.4
Q ss_pred ceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC
Q 018775 188 QSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD 240 (350)
Q Consensus 188 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~ 240 (350)
.+|||++||+|.++..+++... +++++|. +.+++.+++ .++++++.+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999988754 7899998 888877764 3478999998865
|
|
| >smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0004 Score=47.96 Aligned_cols=59 Identities=22% Similarity=0.345 Sum_probs=48.0
Q ss_pred HhcChhhhhhhCCC-CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 31 VELRLADIMHSHGS-PITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 31 ~~lglfd~L~~~~~-~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
.+-.|++.|...++ ++|+.|||+.+|+ +...+++.|..|...|+|.+.+.. ++.|+++.
T Consensus 7 ~~~~IL~~L~~~g~~~~ta~eLa~~lgl---~~~~v~r~L~~L~~~G~V~~~~~~----~~~W~i~~ 66 (68)
T smart00550 7 LEEKILEFLENSGDETSTALQLAKNLGL---PKKEVNRVLYSLEKKGKVCKQGGT----PPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCC----CCceEeec
Confidence 45567888887643 2999999999999 788999999999999999997531 46787664
|
Helix-turn-helix-containing domain. Also known as Zab. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00072 Score=56.48 Aligned_cols=92 Identities=18% Similarity=0.167 Sum_probs=62.8
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCc---------EEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC--
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIK---------GINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP-- 243 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p-- 243 (350)
.+++..|+|-=||+|.+.++-+...++.. +++.|+ +.+++.++. ...|.+...|+.+ +.+
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 56778999999999999998877766666 889998 888876654 5678999999998 633
Q ss_pred CccEEEecc--hhccCCh-HH----HHHHHHHHHhhCCCCC
Q 018775 244 KADAVFMKW--ILHDWDD-EA----CVKILKNCRQAIPDKS 277 (350)
Q Consensus 244 ~~D~i~~~~--vlh~~~~-~~----~~~~L~~~~~~L~~pg 277 (350)
.+|+|++.- -.- .+. .+ -..+++++.++++ |.
T Consensus 106 ~~d~IvtnPPyG~r-~~~~~~~~~ly~~~~~~~~~~l~-~~ 144 (179)
T PF01170_consen 106 SVDAIVTNPPYGRR-LGSKKDLEKLYRQFLRELKRVLK-PR 144 (179)
T ss_dssp BSCEEEEE--STTS-HCHHHHHHHHHHHHHHHHHCHST-TC
T ss_pred CCCEEEECcchhhh-ccCHHHHHHHHHHHHHHHHHHCC-CC
Confidence 489999842 111 111 11 2366888999999 73
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00023 Score=63.75 Aligned_cols=101 Identities=22% Similarity=0.335 Sum_probs=64.2
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCc-EEEecchhHhh----hCCC---CCCeEEEeccCCC---CCCCccEEEecchhc
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIK-GINFDLPHVVA----TAPV---CEGIFHVGGDMFD---AIPKADAVFMKWILH 255 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~----~a~~---~~~i~~~~~d~~~---~~p~~D~i~~~~vlh 255 (350)
..+|||||.|.|.-+-++-.-+|+++ +++++....+. .... ..+......|+.. ++|..|.|.+..++|
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 46699999999988888777788875 45555422222 1111 2222333444444 456556555554444
Q ss_pred cC----ChHHHHHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 256 DW----DDEACVKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 256 ~~----~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
-+ ........++++...+. |||.|+|+|.--+
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~-~gg~lVivErGtp 229 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLA-PGGHLVIVERGTP 229 (484)
T ss_pred hhccccCcchHHHHHHHHHHhcc-CCCeEEEEeCCCc
Confidence 43 33445568999999999 9999999996544
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.012 Score=49.02 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=96.8
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-h----hHhhhCCCCCCeEEEeccCCCCC------CCccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-P----HVVATAPVCEGIFHVGGDMFDAI------PKADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~i~~~~~d~~~~~------p~~D~i~~~~ 252 (350)
++++.+||=+|..+|.+..++..--++-.+.+++. | +.+..+++..+|--+-+|...|. +..|+|..
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~-- 151 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQ-- 151 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEE--
Confidence 78999999999999999999998777666677765 4 34455555667777778888864 34888876
Q ss_pred hhccCC-hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 253 ILHDWD-DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 253 vlh~~~-~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
+.. ++++.-+..|+..-|+ +||.++++=-...-+... ...--..+-.+.|++.||+
T Consensus 152 ---DVAQp~Qa~I~~~Na~~FLk-~~G~~~i~iKArSIdvT~-------------------dp~~vf~~ev~kL~~~~f~ 208 (231)
T COG1889 152 ---DVAQPNQAEILADNAEFFLK-KGGYVVIAIKARSIDVTA-------------------DPEEVFKDEVEKLEEGGFE 208 (231)
T ss_pred ---ecCCchHHHHHHHHHHHhcc-cCCeEEEEEEeecccccC-------------------CHHHHHHHHHHHHHhcCce
Confidence 333 3456667789999999 999888755444433221 0000122223567888999
Q ss_pred eeEEEEcCC---ceeEEEEee
Q 018775 332 RCKIISMPA---LYSIIEAYP 349 (350)
Q Consensus 332 ~~~~~~~~~---~~~vi~~~~ 349 (350)
+.++..+.. .+.+|.+++
T Consensus 209 i~e~~~LePye~DH~~i~~~~ 229 (231)
T COG1889 209 ILEVVDLEPYEKDHALIVAKY 229 (231)
T ss_pred eeEEeccCCcccceEEEEEee
Confidence 999988844 366666654
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0024 Score=52.81 Aligned_cols=102 Identities=10% Similarity=0.172 Sum_probs=67.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCCCCccEEEecchhccC
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAIPKADAVFMKWILHDW 257 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~p~~D~i~~~~vlh~~ 257 (350)
.-.+++|||+|.|+|..++.-++... ..++..|+ |......+- .-.|.++..|..-+.+.+|+++.+.++++
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~- 154 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYN- 154 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecC-
Confidence 55789999999999999988777642 23444455 544443332 45677888887774456999999999987
Q ss_pred ChHHHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 258 DDEACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 258 ~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
......++. ..+.++..|-.++|.++.++.
T Consensus 155 -~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 155 -HTEADRLIP-WKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred -chHHHHHHH-HHHHHHhCCCEEEEeCCCCCC
Confidence 444556677 555554155566655554443
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0038 Score=53.06 Aligned_cols=141 Identities=15% Similarity=0.199 Sum_probs=89.9
Q ss_pred CCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-h----hHhhhCCCCCCeEEEeccCCCCC------CCccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-P----HVVATAPVCEGIFHVGGDMFDAI------PKADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~----~~~~~a~~~~~i~~~~~d~~~~~------p~~D~i~~~ 251 (350)
+.++.+||-+|.++|.+...+..- .|+-.+..++. | +.++.+++..+|--+-.|...|. +..|+|++-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 778999999999999999998874 45667777776 5 34445555667777778888752 348988862
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
+-+ ++++.-++.++...|| +||.+++.=-...-+... ...-...+=.+.|++.||+
T Consensus 151 -VaQ---p~Qa~I~~~Na~~fLk-~gG~~~i~iKa~siD~t~-------------------~p~~vf~~e~~~L~~~~~~ 206 (229)
T PF01269_consen 151 -VAQ---PDQARIAALNARHFLK-PGGHLIISIKARSIDSTA-------------------DPEEVFAEEVKKLKEEGFK 206 (229)
T ss_dssp --SS---TTHHHHHHHHHHHHEE-EEEEEEEEEEHHHH-SSS-------------------SHHHHHHHHHHHHHCTTCE
T ss_pred -CCC---hHHHHHHHHHHHhhcc-CCcEEEEEEecCcccCcC-------------------CHHHHHHHHHHHHHHcCCC
Confidence 222 3566778889999999 999999854332211110 0000122234567889999
Q ss_pred eeEEEEcCCc---eeEEEEe
Q 018775 332 RCKIISMPAL---YSIIEAY 348 (350)
Q Consensus 332 ~~~~~~~~~~---~~vi~~~ 348 (350)
..+...+..+ +.++.++
T Consensus 207 ~~e~i~LePy~~dH~~vv~~ 226 (229)
T PF01269_consen 207 PLEQITLEPYERDHAMVVGR 226 (229)
T ss_dssp EEEEEE-TTTSTTEEEEEEE
T ss_pred hheEeccCCCCCCcEEEEEE
Confidence 9999888543 5565554
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00048 Score=63.63 Aligned_cols=104 Identities=16% Similarity=0.108 Sum_probs=79.8
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCCC--ccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIPK--ADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p~--~D~i~~~~ 252 (350)
..+...++|+|||.|.....+.. +.....++++. +.-+..+.. .+...++.+|+.+ ++++ ||.+.+..
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred CcccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 34566899999999999987665 45667888887 444333322 4555568889998 6764 99999999
Q ss_pred hhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCC
Q 018775 253 ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDG 291 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~ 291 (350)
+..|.++. ..++++++++++ |||.+++.|.+.....
T Consensus 187 ~~~~~~~~--~~~y~Ei~rv~k-pGG~~i~~e~i~~~~~ 222 (364)
T KOG1269|consen 187 VVCHAPDL--EKVYAEIYRVLK-PGGLFIVKEWIKTAKL 222 (364)
T ss_pred ecccCCcH--HHHHHHHhcccC-CCceEEeHHHHHhhhc
Confidence 99987765 478999999999 9999999888776543
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0029 Score=50.86 Aligned_cols=96 Identities=24% Similarity=0.319 Sum_probs=64.7
Q ss_pred EEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhCCC-C--CC---eEEEeccCCC---CCC---CccEEEecchhc
Q 018775 190 LADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATAPV-C--EG---IFHVGGDMFD---AIP---KADAVFMKWILH 255 (350)
Q Consensus 190 vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-~--~~---i~~~~~d~~~---~~p---~~D~i~~~~vlh 255 (350)
++|+|||+|... .+....+. ..++++|. +.++..++. . .. +.+..+|... ++. .+|++......|
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999977 33333333 36777887 666665332 1 11 5777777664 333 489994444444
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCC
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQED 290 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~ 290 (350)
+.. ....++++.+.++ |+|.+++........
T Consensus 131 ~~~---~~~~~~~~~~~l~-~~g~~~~~~~~~~~~ 161 (257)
T COG0500 131 LLP---PAKALRELLRVLK-PGGRLVLSDLLRDGL 161 (257)
T ss_pred cCC---HHHHHHHHHHhcC-CCcEEEEEeccCCCC
Confidence 433 5678999999999 999999887765543
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0027 Score=56.27 Aligned_cols=145 Identities=16% Similarity=0.121 Sum_probs=95.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC---------CCCeEEEeccCCCCC------CC-----
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV---------CEGIFHVGGDMFDAI------PK----- 244 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~i~~~~~d~~~~~------p~----- 244 (350)
.+...|+.+|||-=....++... +++++.-+|.|++++.-++ ..+..++..|+.... .+
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34567999999987777776432 3578888898988763322 568889999987321 11
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhh-cC-Cc--ccCCHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAH-TT-GG--KERTEQE 320 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~--~~~s~~e 320 (350)
.-++++..++.+++.+++.++|+.+.+... ||+.++ .|.+.+..... .. ........... .. .. ...+.++
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~-~gs~l~-~d~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSA-PGSRLA-FDYVRPLDGEW-RA--GMRAPVYHAARGVDGSGLVFGIDRAD 233 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCC-CCcEEE-EEeccccchhH-HH--HHHHHHHHhhhcccccccccCCChhh
Confidence 348888999999999999999999999988 877655 56555421110 00 00000000000 00 00 1236799
Q ss_pred HHHHHHhcCCceeEE
Q 018775 321 WMKLLEQGGFHRCKI 335 (350)
Q Consensus 321 ~~~ll~~aGf~~~~~ 335 (350)
+.++|++.||+....
T Consensus 234 ~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 234 VAEWLAERGWRASEH 248 (260)
T ss_pred HHHHHHHCCCeeecC
Confidence 999999999998765
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00077 Score=55.19 Aligned_cols=95 Identities=19% Similarity=0.195 Sum_probs=71.7
Q ss_pred ceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCCCccEEEecchhccCCh
Q 018775 188 QSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIPKADAVFMKWILHDWDD 259 (350)
Q Consensus 188 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p~~D~i~~~~vlh~~~~ 259 (350)
..+.|+|.|+|-++.-.++. .-+++.++. |.....+.+ .++++++.+|..+ ++..+|+|+|...=-.+-+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 58899999999998755554 346777777 776666654 5789999999999 8878999998543222234
Q ss_pred HHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 260 EACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 260 ~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
++-+.+++.+.+.|+ -.++++-.+.
T Consensus 112 E~qVpV~n~vleFLr-~d~tiiPq~v 136 (252)
T COG4076 112 EKQVPVINAVLEFLR-YDPTIIPQEV 136 (252)
T ss_pred ccccHHHHHHHHHhh-cCCccccHHH
Confidence 555788999999999 8888875443
|
|
| >smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00066 Score=49.77 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=47.6
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhc
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHIS 98 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s 98 (350)
+.|++.|...++++|+.|||+.+|+ +...+.|.|+.|+..|++.+... ++.|++++..
T Consensus 8 ~~Il~~l~~~~~~~t~~~ia~~l~i---~~~tv~r~l~~L~~~g~l~~~~~-----~~~y~l~~~~ 65 (91)
T smart00346 8 LAVLRALAEEPGGLTLAELAERLGL---SKSTAHRLLNTLQELGYVEQDGQ-----NGRYRLGPKV 65 (91)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeeecCC-----CCceeecHHH
Confidence 4567777664358999999999999 88999999999999999999742 4678877643
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00094 Score=61.03 Aligned_cols=100 Identities=20% Similarity=0.308 Sum_probs=67.3
Q ss_pred CCCcceEEEecCCchHHHHHHHHH-------CCCCcEEEecc-hhHhhhCC------C--CCCeEEEeccCCC-C-CC--
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKS-------YPHIKGINFDL-PHVVATAP------V--CEGIFHVGGDMFD-A-IP-- 243 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~------~--~~~i~~~~~d~~~-~-~p-- 243 (350)
..++.+|+|-.||+|.++.++.+. .+..+++++|. +.++..++ . .....+..+|.+. + ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 556789999999999999888774 47788999998 76665443 1 3345688899887 2 32
Q ss_pred -CccEEEec--chhccCCh-----------------HHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 244 -KADAVFMK--WILHDWDD-----------------EACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 244 -~~D~i~~~--~vlh~~~~-----------------~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
.||+|+++ +....|.. ..-..++.++.+.|+ +||++.++-
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk-~~G~~~~Il 183 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLK-PGGRAAIIL 183 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcc-cccceeEEe
Confidence 49999985 33331211 111258899999999 999977543
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.013 Score=49.69 Aligned_cols=118 Identities=17% Similarity=0.179 Sum_probs=86.8
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCC---CccEEEecchh
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIP---KADAVFMKWIL 254 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p---~~D~i~~~~vl 254 (350)
.+.++.||||-++.+.+.|++.++..+++..|. +...+.|.+ .+++++..+|-+.++. ..|+++...
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAG-- 93 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAG-- 93 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeC--
Confidence 455699999999999999999999999999997 655554432 7899999999988542 388887655
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeE
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCK 334 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~ 334 (350)
++-.-...+|.+-.+-|+ .=-++++ .+ --...+++++|.+.+|.++.
T Consensus 94 --MGG~lI~~ILee~~~~l~-~~~rlIL-----QP-------------------------n~~~~~LR~~L~~~~~~I~~ 140 (226)
T COG2384 94 --MGGTLIREILEEGKEKLK-GVERLIL-----QP-------------------------NIHTYELREWLSANSYEIKA 140 (226)
T ss_pred --CcHHHHHHHHHHhhhhhc-CcceEEE-----CC-------------------------CCCHHHHHHHHHhCCceeee
Confidence 445667788888888887 3223332 11 11267788889999998766
Q ss_pred EEEc
Q 018775 335 IISM 338 (350)
Q Consensus 335 ~~~~ 338 (350)
=.-+
T Consensus 141 E~il 144 (226)
T COG2384 141 ETIL 144 (226)
T ss_pred eeee
Confidence 5444
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0014 Score=52.49 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=55.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHH----CCCCcEEEecc-hhHhhhCCC---------CCCeEEEeccCCC-C-CCCccE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKS----YPHIKGINFDL-PHVVATAPV---------CEGIFHVGGDMFD-A-IPKADA 247 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~-~-~p~~D~ 247 (350)
..+..+|+|+|||.|.++..|+.. .++.+++++|. +..++.+.. ..++++..++... . ....++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 467899999999999999999982 27899999998 666665543 3566777776655 2 234778
Q ss_pred EEecchhccCCh
Q 018775 248 VFMKWILHDWDD 259 (350)
Q Consensus 248 i~~~~vlh~~~~ 259 (350)
++.-+.--++++
T Consensus 103 ~vgLHaCG~Ls~ 114 (141)
T PF13679_consen 103 LVGLHACGDLSD 114 (141)
T ss_pred EEEeecccchHH
Confidence 887666655554
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.003 Score=57.27 Aligned_cols=85 Identities=13% Similarity=0.112 Sum_probs=65.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCCCCeEEEeccCCCCC--C-CccEEEecchhccCChH
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAI--P-KADAVFMKWILHDWDDE 260 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~--p-~~D~i~~~~vlh~~~~~ 260 (350)
+.++.++|||||++|.++..++++ +.+++.+|...+........+|++..+|.+... + ++|+++|--+-. +
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~---P- 282 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK---P- 282 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC---H-
Confidence 457899999999999999999997 559999998666666666889999999998832 2 499999855433 2
Q ss_pred HHHHHHHHHHhhCCCCC
Q 018775 261 ACVKILKNCRQAIPDKS 277 (350)
Q Consensus 261 ~~~~~L~~~~~~L~~pg 277 (350)
..+.+-+.+.+. .|
T Consensus 283 --~rva~lm~~Wl~-~g 296 (357)
T PRK11760 283 --ARVAELMAQWLV-NG 296 (357)
T ss_pred --HHHHHHHHHHHh-cC
Confidence 245666666776 54
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00092 Score=52.40 Aligned_cols=67 Identities=18% Similarity=0.126 Sum_probs=50.2
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCCC--C-ccEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAIP--K-ADAVFMKW 252 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~p--~-~D~i~~~~ 252 (350)
-.+..++|+|||.|-+++... .+.+-.++++|+ |+.++.+.. .-.+.+.+.|+.++.+ . ||..+.+-
T Consensus 47 iEgkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred ccCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence 358899999999999994332 234457899999 999998765 4567888899988433 2 88887753
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.013 Score=50.30 Aligned_cols=149 Identities=15% Similarity=0.133 Sum_probs=89.9
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc--hhHhhhCCCCCCeEEEec-cCCCC----CC-Ccc
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL--PHVVATAPVCEGIFHVGG-DMFDA----IP-KAD 246 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~~i~~~~~-d~~~~----~p-~~D 246 (350)
..++.|+ ....+..+||||+.||.|+..++++.. -.++++|. .+..-..+...||..+.. |+..- +. ..|
T Consensus 69 ~ale~F~-l~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 69 KALEEFE-LDVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred HHHHhcC-cCCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCC
Confidence 3455555 235689999999999999999998743 36777775 445555666777776654 44331 22 367
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEE-eeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHH
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV-EIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLL 325 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll 325 (350)
++++- .+--....+|-.+...++ |++-++.. -+-....... ......+.+-. ....-.+++.+++
T Consensus 147 ~~v~D-----vSFISL~~iLp~l~~l~~-~~~~~v~LvKPQFEagr~~-v~kkGvv~d~~-------~~~~v~~~i~~~~ 212 (245)
T COG1189 147 LIVID-----VSFISLKLILPALLLLLK-DGGDLVLLVKPQFEAGREQ-VGKKGVVRDPK-------LHAEVLSKIENFA 212 (245)
T ss_pred eEEEE-----eehhhHHHHHHHHHHhcC-CCceEEEEecchhhhhhhh-cCcCceecCcc-------hHHHHHHHHHHHH
Confidence 77762 222235678999999999 98876652 2211111110 00000111110 1222467888999
Q ss_pred HhcCCceeEEEEcC
Q 018775 326 EQGGFHRCKIISMP 339 (350)
Q Consensus 326 ~~aGf~~~~~~~~~ 339 (350)
.+.||++..+.+.+
T Consensus 213 ~~~g~~~~gl~~Sp 226 (245)
T COG1189 213 KELGFQVKGLIKSP 226 (245)
T ss_pred hhcCcEEeeeEccC
Confidence 99999999887653
|
|
| >PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00056 Score=46.13 Aligned_cols=55 Identities=22% Similarity=0.395 Sum_probs=46.6
Q ss_pred HHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 24 SMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 24 ~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+.+|.--.++.|+..|... +|.|+.|||+.+|+ +...+.+-|+.|...|+|+...
T Consensus 4 ~~aL~~p~R~~Il~~L~~~-~~~t~~ela~~l~~---~~~t~s~hL~~L~~aGli~~~~ 58 (61)
T PF12840_consen 4 FKALSDPTRLRILRLLASN-GPMTVSELAEELGI---SQSTVSYHLKKLEEAGLIEVER 58 (61)
T ss_dssp HHHHTSHHHHHHHHHHHHC-STBEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhCCHHHHHHHHHHhcC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence 4556666788888999333 79999999999999 8899999999999999999876
|
... |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0015 Score=58.26 Aligned_cols=100 Identities=18% Similarity=0.290 Sum_probs=74.6
Q ss_pred cceEEEecCCchHHHHHHHHHC--------------------CCCcEEEecc-h--hHhhhCCC----------------
Q 018775 187 IQSLADVGGGTGGALAEIVKSY--------------------PHIKGINFDL-P--HVVATAPV---------------- 227 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~--------------------p~~~~~~~D~-~--~~~~~a~~---------------- 227 (350)
..+||-||||.|.-..+++..+ +.++++.+|+ + .+++....
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4799999999998777766654 2257888887 3 45443221
Q ss_pred -------CCCeEEEeccCCC-CC---------CCccEEEecchhccC---ChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 228 -------CEGIFHVGGDMFD-AI---------PKADAVFMKWILHDW---DDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 228 -------~~~i~~~~~d~~~-~~---------p~~D~i~~~~vlh~~---~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
.-.++|.+.|+.+ .. |..|+|.+.++++.+ +..+..++|.++-+.++ ||..|+|+|..-
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~-~GslLLVvDSpG 245 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICP-PGSLLLVVDSPG 245 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcC-CCcEEEEEcCCC
Confidence 2358899999998 32 237899888777653 56678899999999999 999999998544
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.00044 Score=56.31 Aligned_cols=61 Identities=26% Similarity=0.514 Sum_probs=45.0
Q ss_pred eEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC---CC--C-ccEEEec
Q 018775 189 SLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA---IP--K-ADAVFMK 251 (350)
Q Consensus 189 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~p--~-~D~i~~~ 251 (350)
.|+|+-||.|..++.+++.+. +++.+|+ |..++.++. .++|.++.+|+++. +. . +|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 699999999999999999865 5777887 777776653 57999999999982 22 2 7999873
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0031 Score=62.00 Aligned_cols=66 Identities=15% Similarity=0.129 Sum_probs=46.3
Q ss_pred CcceEEEecCCchHHHHHHHHHCCC--------CcEEEecc-hhHhhhCCC------CCCeEEEeccCCCC--------C
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPH--------IKGINFDL-PHVVATAPV------CEGIFHVGGDMFDA--------I 242 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~--------~ 242 (350)
...+|||.|||+|.++..++...+. ..++++|+ +..++.++. ...+.+...|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4679999999999999999886642 46788898 777665542 12355566665431 1
Q ss_pred CCccEEEec
Q 018775 243 PKADAVFMK 251 (350)
Q Consensus 243 p~~D~i~~~ 251 (350)
+.||+|+.+
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 349999995
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.014 Score=51.93 Aligned_cols=147 Identities=16% Similarity=0.211 Sum_probs=101.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC--CCCcEEEecchhHhhhCC----C------------------------CCCeEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY--PHIKGINFDLPHVVATAP----V------------------------CEGIFH 233 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~----~------------------------~~~i~~ 233 (350)
..+...|+.+|||.-.+...|...+ +.++++-+|.|++++.-- + +.+..+
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 3478999999999999999999987 888999999977654211 0 234445
Q ss_pred EeccCCC--CC----------CC-ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccch
Q 018775 234 VGGDMFD--AI----------PK-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGL 300 (350)
Q Consensus 234 ~~~d~~~--~~----------p~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~ 300 (350)
+..|..+ .+ .+ .-+++...+|-++++++...+++-+.+..+ .+.+++.|.+.+.++. +.
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~--~a~fv~YEQi~~~D~F------g~ 236 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFE--NAHFVNYEQINPNDRF------GK 236 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCC--cccEEEEeccCCCChH------HH
Confidence 5555553 10 01 446677899999999999999999988876 6788999998865542 22
Q ss_pred hhhhhHhhh-cC-Cc--ccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 301 VFDLVMFAH-TT-GG--KERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 301 ~~~~~~~~~-~~-~~--~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
++--+.... ++ +| ...|.+..++-+.++||..+.+..+
T Consensus 237 vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 237 VMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred HHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 211111100 00 01 1237888899999999999887654
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0021 Score=55.66 Aligned_cols=130 Identities=17% Similarity=0.122 Sum_probs=79.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCCC--CccEEEecchhc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAIP--KADAVFMKWILH 255 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~p--~~D~i~~~~vlh 255 (350)
.....+|+|||||.--++.-.....|+.+++++|+ ...++.... ....++...|.....| .+||.++.-++|
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLP 182 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHH
Confidence 34589999999999999988888888899999999 777776553 5677888889998433 499999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccC-CHHHHHHHHHhcCCceeE
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKER-TEQEWMKLLEQGGFHRCK 334 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~e~~~ll~~aGf~~~~ 334 (350)
.+...+. ..--++-+.++ .-.++|..+...-.... . |... -..++.+++.+-|+.+-+
T Consensus 183 ~le~q~~-g~g~~ll~~~~--~~~~vVSfPtrSL~gR~-----------------~-gm~~~y~~~fe~~~~~~~~~~~~ 241 (251)
T PF07091_consen 183 CLERQRR-GAGLELLDALR--SPHVVVSFPTRSLGGRN-----------------K-GMEQTYSAWFEALAAERGWIVDR 241 (251)
T ss_dssp HHHHHST-THHHHHHHHSC--ESEEEEEEES------------------------T-THHHCHHHHHHHHCCTTCEEEEE
T ss_pred HHHHHhc-chHHHHHHHhC--CCeEEEeccccccccCc-----------------c-ccccCHHHHHHHhcccCCceeee
Confidence 8765543 22233444444 23555554444332210 0 2221 245667777777877443
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0076 Score=49.51 Aligned_cols=102 Identities=23% Similarity=0.330 Sum_probs=65.1
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecchhHhhhCCCCCCeEEEec-cCCCC---------CC
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDLPHVVATAPVCEGIFHVGG-DMFDA---------IP 243 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~i~~~~~-d~~~~---------~p 243 (350)
++-+++. .+.+..+|||+||..|..+.-..++. |+--+.++|+-++.. ...++++.+ |+.+| .|
T Consensus 59 EindKy~-~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 59 EINDKYR-FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred eehhhcc-ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCCHHHHHHHHHhCC
Confidence 3444454 35789999999999999998877764 999999999743321 223445555 55553 24
Q ss_pred C--ccEEEecc--------hhccC-ChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 244 K--ADAVFMKW--------ILHDW-DDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 244 ~--~D~i~~~~--------vlh~~-~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
. .|+|++-. ++.|. ..+-|..+|.-....+. |+|.+++
T Consensus 134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~-p~g~fvc 182 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLI-PNGSFVC 182 (232)
T ss_pred CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcC-CCcEEEE
Confidence 3 78887622 22221 12234455666667778 9999886
|
|
| >COG1414 IclR Transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0017 Score=57.16 Aligned_cols=59 Identities=20% Similarity=0.321 Sum_probs=49.0
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
+.|++.|...+.++++.|||+++|+ +...+.|+|..|+..||+++++. +++|++++..-
T Consensus 7 l~iL~~l~~~~~~l~l~ela~~~gl---pksT~~RlL~tL~~~G~v~~d~~-----~g~Y~Lg~~~~ 65 (246)
T COG1414 7 LAILDLLAEGPGGLSLAELAERLGL---PKSTVHRLLQTLVELGYVEQDPE-----DGRYRLGPRLL 65 (246)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEcCC-----CCcEeehHHHH
Confidence 4567777763345679999999999 88999999999999999999984 46899988654
|
|
| >PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0022 Score=46.15 Aligned_cols=48 Identities=17% Similarity=0.430 Sum_probs=39.2
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHIS 98 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s 98 (350)
+++|.+|||+++++ ++..++++++.|...|+++...+ ++|.|.++...
T Consensus 24 ~~~s~~eiA~~~~i---~~~~l~kil~~L~~~Gli~s~~G----~~GGy~L~~~~ 71 (83)
T PF02082_consen 24 KPVSSKEIAERLGI---SPSYLRKILQKLKKAGLIESSRG----RGGGYRLARPP 71 (83)
T ss_dssp C-BEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEETS----TTSEEEESS-C
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHhhCCeeEecCC----CCCceeecCCH
Confidence 46999999999999 89999999999999999998752 25789877543
|
(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C. |
| >PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0016 Score=41.36 Aligned_cols=44 Identities=18% Similarity=0.413 Sum_probs=38.7
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceee
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAV 80 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 80 (350)
++.+...|.+ +|.++.||++.+|+ +...+.+.|+.|...|++.+
T Consensus 4 R~~Il~~L~~--~~~~~~el~~~l~~---s~~~vs~hL~~L~~~glV~~ 47 (47)
T PF01022_consen 4 RLRILKLLSE--GPLTVSELAEELGL---SQSTVSHHLKKLREAGLVEK 47 (47)
T ss_dssp HHHHHHHHTT--SSEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHh--CCCchhhHHHhccc---cchHHHHHHHHHHHCcCeeC
Confidence 4567778887 79999999999999 89999999999999999974
|
One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B .... |
| >PRK11569 transcriptional repressor IclR; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0027 Score=56.91 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=48.9
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKW 100 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~ 100 (350)
+.|++.|.+...++|+.|||+.+|+ +...+.|+|..|+..||+.+++. .++|++.+....
T Consensus 31 l~IL~~l~~~~~~~~lseia~~lgl---pksTv~RlL~tL~~~G~l~~~~~-----~~~Y~lG~~l~~ 90 (274)
T PRK11569 31 LKLLEWIAESNGSVALTELAQQAGL---PNSTTHRLLTTMQQQGFVRQVGE-----LGHWAIGAHAFI 90 (274)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-----CCeEecCHHHHH
Confidence 4456666554478999999999999 88999999999999999998753 488998876543
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0011 Score=50.14 Aligned_cols=90 Identities=19% Similarity=0.235 Sum_probs=39.8
Q ss_pred EEecCCchHHHHHHHHHCCCC---cEEEecc-h---hHhhhCCC---CCCeEEEeccCCCC---C--CCccEEEecchhc
Q 018775 191 ADVGGGTGGALAEIVKSYPHI---KGINFDL-P---HVVATAPV---CEGIFHVGGDMFDA---I--PKADAVFMKWILH 255 (350)
Q Consensus 191 LDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~---~~~i~~~~~d~~~~---~--p~~D~i~~~~vlh 255 (350)
||||+..|..+..+++..+.. +++.+|. + ..-+..++ .++++++.+|..+- + +++|+++.=. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999988876544 5889998 5 23333332 57899999998762 2 2589888732 22
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
. .+....-++.+.+.|+ |||.+++-|
T Consensus 80 ~--~~~~~~dl~~~~~~l~-~ggviv~dD 105 (106)
T PF13578_consen 80 S--YEAVLRDLENALPRLA-PGGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEE-EEEEEEEE-
T ss_pred C--HHHHHHHHHHHHHHcC-CCeEEEEeC
Confidence 2 3456677999999999 999888754
|
|
| >PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.00082 Score=46.40 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=41.1
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..++..|-.. ++.|++|||+.+|+ +...+.+.|+-|...|++++.+
T Consensus 9 ~E~~vy~~Ll~~-~~~t~~eIa~~l~i---~~~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 9 NEAKVYLALLKN-GPATAEEIAEELGI---SRSTVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp HHHHHHHHHHHH-CHEEHHHHHHHHTS---SHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc
Confidence 345566666433 79999999999999 8999999999999999999997
|
TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0032 Score=50.31 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=42.6
Q ss_pred eEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC
Q 018775 189 SLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD 240 (350)
Q Consensus 189 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~ 240 (350)
.|+|||||.|.++..+++.+|..+++.+|. |.+.+.+++ ..++++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999989999998 777776654 2457777776665
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0028 Score=55.88 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=48.8
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
+.|++.+.....|+|+.|||+++|+ +...+.|+|..|+..||+++++ ++|++.+....+
T Consensus 12 l~IL~~l~~~~~~~~l~eia~~lgl---pksT~~RlL~tL~~~G~l~~~~-------~~Y~lG~~~~~l 70 (248)
T TIGR02431 12 LAVIEAFGAERPRLTLTDVAEATGL---TRAAARRFLLTLVELGYVTSDG-------RLFWLTPRVLRL 70 (248)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCC-------CEEEecHHHHHH
Confidence 4567777654478999999999999 8899999999999999999864 789988765433
|
Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.016 Score=58.90 Aligned_cols=112 Identities=18% Similarity=0.071 Sum_probs=71.4
Q ss_pred hHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHH------------C------------------------------C
Q 018775 172 VMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS------------Y------------------------------P 209 (350)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~------------~------------------------------p 209 (350)
++..++..-.| ..++..++|-.||+|.++++.+.. | .
T Consensus 177 lAaa~l~~a~w-~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 177 LAAAILLRSGW-PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHcCC-CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 34455554442 145789999999999999886542 1 1
Q ss_pred CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC----CccEEEecc-hhccCC-hHHHHHHHHHHHhh--
Q 018775 210 HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP----KADAVFMKW-ILHDWD-DEACVKILKNCRQA-- 272 (350)
Q Consensus 210 ~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p----~~D~i~~~~-vlh~~~-~~~~~~~L~~~~~~-- 272 (350)
..+++++|+ +.+++.++. .++|.+..+|+.+ +.+ .+|+|+++- .-.-+. ..+...+.+.+.+.
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 236899999 888887764 4679999999987 332 399999861 111122 23334444443333
Q ss_pred -CCCCCceEEEEee
Q 018775 273 -IPDKSGKLVLVEI 285 (350)
Q Consensus 273 -L~~pgG~lli~e~ 285 (350)
.. ||+++.++..
T Consensus 336 ~~~-~g~~~~llt~ 348 (702)
T PRK11783 336 QQF-GGWNAALFSS 348 (702)
T ss_pred HhC-CCCeEEEEeC
Confidence 34 7888877553
|
|
| >PRK10163 DNA-binding transcriptional repressor AllR; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0032 Score=56.29 Aligned_cols=59 Identities=8% Similarity=0.161 Sum_probs=48.3
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
+.|++.|...+.++|+.|||+++|+ +...+.|+|..|+..|||.+++. .++|++.....
T Consensus 28 l~IL~~~~~~~~~~tl~eIa~~lgl---pkStv~RlL~tL~~~G~l~~~~~-----~~~Y~lG~~l~ 86 (271)
T PRK10163 28 IAILQYLEKSGGSSSVSDISLNLDL---PLSTTFRLLKVLQAADFVYQDSQ-----LGWWHIGLGVF 86 (271)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-----CCeEEecHHHH
Confidence 4456666554468999999999999 88999999999999999999753 47899887543
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0065 Score=55.49 Aligned_cols=98 Identities=19% Similarity=0.169 Sum_probs=78.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--CC-CCccEEEecch
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--AI-PKADAVFMKWI 253 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~~-p~~D~i~~~~v 253 (350)
..+.+|||.=+|.|.+++.+++... .+++.+|+ |..++.+++ .++|+.+.||..+ +. +.+|-|++...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 3589999999999999999998743 34999999 988887654 5679999999998 33 45999998663
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCC
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQED 290 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~ 290 (350)
- .+.+++..+.+.++ +||.+...+....+.
T Consensus 266 ~------~a~~fl~~A~~~~k-~~g~iHyy~~~~e~~ 295 (341)
T COG2520 266 K------SAHEFLPLALELLK-DGGIIHYYEFVPEDD 295 (341)
T ss_pred C------cchhhHHHHHHHhh-cCcEEEEEeccchhh
Confidence 3 23577889999999 999998888776554
|
|
| >cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.012 Score=40.23 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=39.4
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
.++|..+||+.+|+ +...+.+.|+.|...|++...+ .+.|.+++
T Consensus 24 ~~~s~~ela~~~g~---s~~tv~r~l~~L~~~g~i~~~~------~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGL---TRETVSRTLKELEEEGLISRRG------RGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC------CCeEEeCC
Confidence 68999999999999 8899999999999999999986 36787653
|
|
| >PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0042 Score=42.66 Aligned_cols=60 Identities=18% Similarity=0.361 Sum_probs=40.3
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChh
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHI 97 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~ 97 (350)
++..|....++++..+|++.+++ +...+.+.++.|...|+|++.....+.-...|++|+.
T Consensus 8 vL~~l~~~~~~~t~~~l~~~~~~---~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~ 67 (68)
T PF13463_consen 8 VLRALAHSDGPMTQSDLAERLGI---SKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPA 67 (68)
T ss_dssp HHHHHT--TS-BEHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HH
T ss_pred HHHHHHccCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCC
Confidence 34444411279999999999999 8899999999999999998875321111235788765
|
|
| >PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0036 Score=39.83 Aligned_cols=45 Identities=18% Similarity=0.364 Sum_probs=37.8
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCcee
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFA 79 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~ 79 (350)
.+..|+..|.++ +++|..|||+.+|+ +...+.+.|+-|...|+++
T Consensus 4 ~~~~Il~~l~~~-~~~t~~ela~~~~i---s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 4 TQRKILNYLREN-PRITQKELAEKLGI---SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHC-TTS-HHHHHHHHTS----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCcCcC
Confidence 355678888886 58999999999999 8999999999999999985
|
... |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.022 Score=51.43 Aligned_cols=150 Identities=12% Similarity=0.023 Sum_probs=93.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC---------CCCeEEEeccCCC-CCC------Ccc--
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV---------CEGIFHVGGDMFD-AIP------KAD-- 246 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~i~~~~~d~~~-~~p------~~D-- 246 (350)
.+...|+-+|||-=.-+-++-.- +.+++.-+|.|++++.-++ ..++++++.|+++ +.+ +||
T Consensus 91 ~g~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 91 AGIRQVVILGAGLDTRAYRLDWP-KGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred hcccEEEEeccccccceeecCCC-CCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 34789999999954444333221 2477888888999885432 3489999999995 433 244
Q ss_pred ---EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCc--ccccchhhhhhHhhhcCCcccCCHHHH
Q 018775 247 ---AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNI--FGDMGLVFDLVMFAHTTGGKERTEQEW 321 (350)
Q Consensus 247 ---~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~e~ 321 (350)
++++..++-+++.+...++|+++...+. ||..++............. ...............-..-......++
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~-~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~ 248 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSA-PGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDPAEI 248 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCC-CCceEEEeccccHHHHhcccchhhhhhccccccccccceeccCCHHHH
Confidence 8889999999999999999999999999 8877765443111111000 000000000000000000011247899
Q ss_pred HHHHHhcCCceeEEE
Q 018775 322 MKLLEQGGFHRCKII 336 (350)
Q Consensus 322 ~~ll~~aGf~~~~~~ 336 (350)
..++.+.||......
T Consensus 249 ~~~l~~~g~~~~~~~ 263 (297)
T COG3315 249 ETWLAERGWRSTLNR 263 (297)
T ss_pred HHHHHhcCEEEEecC
Confidence 999999999988763
|
|
| >PRK09834 DNA-binding transcriptional activator MhpR; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0046 Score=55.07 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=49.5
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
+.|++.|...++++|..|||+.+|+ +...+.|+|+.|+..||++++.. ++.|++++....+
T Consensus 14 l~iL~~l~~~~~~ls~~eia~~lgl---~kstv~RlL~tL~~~g~v~~~~~-----~~~Y~Lg~~~~~l 74 (263)
T PRK09834 14 LMVLRALNRLDGGATVGLLAELTGL---HRTTVRRLLETLQEEGYVRRSAS-----DDSFRLTLKVRQL 74 (263)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEecC-----CCcEEEcHHHHHH
Confidence 4566666554357999999999999 88999999999999999999753 4789998765443
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.006 Score=56.90 Aligned_cols=97 Identities=14% Similarity=0.124 Sum_probs=72.5
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--------CCCeEEEeccCCCCC----C---CccEEE
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--------CEGIFHVGGDMFDAI----P---KADAVF 249 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~~~----p---~~D~i~ 249 (350)
.+.+|||+=|=||.++...+.... .++|.+|. ..+++.+++ ..++.++.+|.++-+ . .||+|+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 389999999999999988777532 28999998 777777764 567899999999821 1 499999
Q ss_pred ec-chhcc-----CC-hHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 250 MK-WILHD-----WD-DEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 250 ~~-~vlh~-----~~-~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+- -.+-. |+ ..+-..++..+.+.|+ |||.+++..
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~-pgG~l~~~s 336 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLA-PGGTLVTSS 336 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcC-CCCEEEEEe
Confidence 81 00000 21 2345688999999999 999998754
|
|
| >PRK15090 DNA-binding transcriptional regulator KdgR; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0047 Score=54.83 Aligned_cols=58 Identities=14% Similarity=0.198 Sum_probs=47.8
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
+.|++.|... +++|+.|||+++|+ +...+.|+|+.|+..||+.++.. +++|++.+...
T Consensus 17 l~IL~~l~~~-~~l~l~eia~~lgl---~kstv~Rll~tL~~~G~l~~~~~-----~~~Y~lG~~~~ 74 (257)
T PRK15090 17 FGILQALGEE-REIGITELSQRVMM---SKSTVYRFLQTMKTLGYVAQEGE-----SEKYSLTLKLF 74 (257)
T ss_pred HHHHHHhhcC-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-----CCcEEecHHHH
Confidence 4455666554 58999999999999 88999999999999999999753 47899987654
|
|
| >smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0073 Score=38.14 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=36.9
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecC
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMT 95 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t 95 (350)
-++|..+||+.+++ +...+.+.|+.|...|++.... +.|.++
T Consensus 7 ~~~s~~~la~~l~~---s~~tv~~~l~~L~~~g~l~~~~-------~~~~i~ 48 (48)
T smart00419 7 LPLTRQEIAELLGL---TRETVSRTLKRLEKEGLISREG-------GRIVIL 48 (48)
T ss_pred eccCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeC-------CEEEEC
Confidence 47899999999999 8899999999999999999875 667643
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0034 Score=52.55 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=63.4
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC---C----CCccEEEe
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA---I----PKADAVFM 250 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~----p~~D~i~~ 250 (350)
.+.+|||+=||+|.++++.+.+.. .+++.+|. +..+...++ .++++++.+|.... . ..||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 589999999999999999888753 36788887 666665543 45789999997651 1 24999998
Q ss_pred cchhccCChHHHHHHHHHHH--hhCCCCCceEEEEeeeec
Q 018775 251 KWILHDWDDEACVKILKNCR--QAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 251 ~~vlh~~~~~~~~~~L~~~~--~~L~~pgG~lli~e~~~~ 288 (350)
--=. .... ....++..+. ..|+ ++|. +|+|....
T Consensus 121 DPPY-~~~~-~~~~~l~~l~~~~~l~-~~~~-ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPY-AKGL-YYEELLELLAENNLLN-EDGL-IIIEHSKK 156 (183)
T ss_dssp --ST-TSCH-HHHHHHHHHHHTTSEE-EEEE-EEEEEETT
T ss_pred CCCc-ccch-HHHHHHHHHHHCCCCC-CCEE-EEEEecCC
Confidence 3211 1111 1255677666 7788 7765 45565554
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0057 Score=43.32 Aligned_cols=56 Identities=16% Similarity=0.312 Sum_probs=42.6
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++..+.. ++.+..+|+..+++ +...+.+.|+.|...|++... ++.|.+|+.+..+.
T Consensus 11 IL~~l~~--~~~~~t~i~~~~~L---~~~~~~~yL~~L~~~gLI~~~-------~~~Y~lTekG~~~l 66 (77)
T PF14947_consen 11 ILKILSK--GGAKKTEIMYKANL---NYSTLKKYLKELEEKGLIKKK-------DGKYRLTEKGKEFL 66 (77)
T ss_dssp HHHHH-T--T-B-HHHHHTTST-----HHHHHHHHHHHHHTTSEEEE-------TTEEEE-HHHHHHH
T ss_pred HHHHHHc--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCcCeeCC-------CCEEEECccHHHHH
Confidence 4455543 79999999999999 899999999999999999775 48999999987444
|
|
| >PRK10857 DNA-binding transcriptional regulator IscR; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.01 Score=48.68 Aligned_cols=47 Identities=19% Similarity=0.388 Sum_probs=40.4
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHI 97 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~ 97 (350)
+++|+++||+++++ ++..+.++|..|...|||....+ ++|.|.+...
T Consensus 24 ~~vs~~eIA~~~~i---p~~~l~kIl~~L~~aGLv~s~rG----~~GGy~Lar~ 70 (164)
T PRK10857 24 GPVPLADISERQGI---SLSYLEQLFSRLRKNGLVSSVRG----PGGGYLLGKD 70 (164)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCCC----CCCCeeccCC
Confidence 68999999999999 89999999999999999998642 2577887643
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.027 Score=48.00 Aligned_cols=100 Identities=12% Similarity=0.167 Sum_probs=72.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhC-------CCCCCeEEEeccCCCCC---------CCc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATA-------PVCEGIFHVGGDMFDAI---------PKA 245 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a-------~~~~~i~~~~~d~~~~~---------p~~ 245 (350)
+-+.++++|||.=+|.-+..++.+.|. -+++.+|. +...+.+ .-...|+++.++..+.+ ..|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 446899999999999999999988765 57788887 5554443 33788999999887621 138
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
|.++. -+|-+ .-.....++-++++ +||.|++-....+.
T Consensus 151 DfaFv----DadK~-nY~~y~e~~l~Llr-~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 151 DFAFV----DADKD-NYSNYYERLLRLLR-VGGVIVVDNVLWPG 188 (237)
T ss_pred eEEEE----ccchH-HHHHHHHHHHhhcc-cccEEEEeccccCC
Confidence 98876 22322 34478899999999 99987764444444
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0093 Score=55.65 Aligned_cols=91 Identities=15% Similarity=0.119 Sum_probs=69.8
Q ss_pred cceEEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhCCC------CCCeEEEeccCCCC--C--CCccEEEecchh
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATAPV------CEGIFHVGGDMFDA--I--PKADAVFMKWIL 254 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~--~--p~~D~i~~~~vl 254 (350)
..+|||+-||+|..+++.+.+.++ -+++..|+ +..++.+++ ..++++..+|...- . ..||+|.+-- .
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 468999999999999999998644 46888898 888876654 23578899988862 1 3499998843 2
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
. . ...++..+.+.++ +||.|.+.-
T Consensus 124 -G--s--~~~fld~al~~~~-~~glL~vTa 147 (374)
T TIGR00308 124 -G--T--PAPFVDSAIQASA-ERGLLLVTA 147 (374)
T ss_pred -C--C--cHHHHHHHHHhcc-cCCEEEEEe
Confidence 1 1 1367889999999 999999974
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.23 Score=46.38 Aligned_cols=103 Identities=21% Similarity=0.308 Sum_probs=63.3
Q ss_pred CcceEEEecCCchHHHHHHH--------HH-------CCCCcEEEecchh-----HhhhCC---------------CCCC
Q 018775 186 SIQSLADVGGGTGGALAEIV--------KS-------YPHIKGINFDLPH-----VVATAP---------------VCEG 230 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~--------~~-------~p~~~~~~~D~~~-----~~~~a~---------------~~~~ 230 (350)
+..+|+|+|||+|..+..+. ++ -|..++..-|+|. ...... ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 46799999999997764432 22 2467777777752 111110 0111
Q ss_pred ---eEEEeccCCC-CCCC--ccEEEecchhccCCh--H----------------------------------HHHHHHHH
Q 018775 231 ---IFHVGGDMFD-AIPK--ADAVFMKWILHDWDD--E----------------------------------ACVKILKN 268 (350)
Q Consensus 231 ---i~~~~~d~~~-~~p~--~D~i~~~~vlh~~~~--~----------------------------------~~~~~L~~ 268 (350)
+.-++|.|.. -+|+ -+++++++.||-++. + |...+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3345678887 4664 889999999986541 0 12234444
Q ss_pred HHhhCCCCCceEEEEeeeecC
Q 018775 269 CRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 269 ~~~~L~~pgG~lli~e~~~~~ 289 (350)
=.+=|. |||++++.-.-+++
T Consensus 223 Ra~ELv-pGG~mvl~~~Gr~~ 242 (386)
T PLN02668 223 RAQEMK-RGGAMFLVCLGRTS 242 (386)
T ss_pred HHHHhc-cCcEEEEEEecCCC
Confidence 445578 99999997766654
|
|
| >PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0028 Score=45.26 Aligned_cols=65 Identities=18% Similarity=0.325 Sum_probs=48.8
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCC-CCCeEecChhch
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGG-DETLYKMTHISK 99 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~-~~~~~~~t~~s~ 99 (350)
+++++...|... ++++..+|.+.+|+ +...+.+.|+.|...|+|+....-.+. |...|++|+.++
T Consensus 1 vRl~Il~~L~~~-~~~~f~~L~~~l~l---t~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr 66 (80)
T PF13601_consen 1 VRLAILALLYAN-EEATFSELKEELGL---TDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGR 66 (80)
T ss_dssp HHHHHHHHHHHH-SEEEHHHHHHHTT-----HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHH
T ss_pred CHHHHHHHHhhc-CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHH
Confidence 466777788764 69999999999999 889999999999999999987642211 223588888876
|
|
| >PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0097 Score=39.95 Aligned_cols=46 Identities=11% Similarity=0.245 Sum_probs=36.7
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+.+.|....+|++..|||+.+|+ +...++++|..|+..|.+.+..
T Consensus 4 ~Il~~i~~~~~p~~T~eiA~~~gl---s~~~aR~yL~~Le~eG~V~~~~ 49 (62)
T PF04703_consen 4 KILEYIKEQNGPLKTREIADALGL---SIYQARYYLEKLEKEGKVERSP 49 (62)
T ss_dssp CHHHHHHHHTS-EEHHHHHHHHTS----HHHHHHHHHHHHHCTSEEEES
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 345555541279999999999999 8999999999999999999864
|
|
| >PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0098 Score=39.38 Aligned_cols=45 Identities=11% Similarity=0.301 Sum_probs=40.4
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+++.|... +.+|+++||+.+|+ ++.-++|=|..|...|++.+..
T Consensus 4 ~Il~~l~~~-~~~s~~ela~~~~V---S~~TiRRDl~~L~~~g~i~r~~ 48 (57)
T PF08220_consen 4 QILELLKEK-GKVSVKELAEEFGV---SEMTIRRDLNKLEKQGLIKRTH 48 (57)
T ss_pred HHHHHHHHc-CCEEHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEc
Confidence 356677765 79999999999999 8899999999999999999997
|
This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular |
| >PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.0077 Score=41.18 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=45.5
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCC--CcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCP--DIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~--~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
|++.|.+.++|++..+|++.++...- ++..+++.|++|...|++.+.+ .+.+.+|+.+.
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~~g------~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRKVG------RQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCccccC------CcccccCHHHH
Confidence 45667666689999999998865221 3589999999999999888776 45667887654
|
|
| >PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0054 Score=42.42 Aligned_cols=44 Identities=18% Similarity=0.352 Sum_probs=37.1
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
|.+.|.+. +.+|..|||.++++ ++..++.+|+.|+..|+|++..
T Consensus 5 i~~~l~~~-~~~S~~eLa~~~~~---s~~~ve~mL~~l~~kG~I~~~~ 48 (69)
T PF09012_consen 5 IRDYLRER-GRVSLAELAREFGI---SPEAVEAMLEQLIRKGYIRKVD 48 (69)
T ss_dssp HHHHHHHS--SEEHHHHHHHTT-----HHHHHHHHHHHHCCTSCEEEE
T ss_pred HHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEec
Confidence 45667665 79999999999999 8999999999999999999986
|
FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A. |
| >PRK10141 DNA-binding transcriptional repressor ArsR; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0095 Score=45.73 Aligned_cols=58 Identities=14% Similarity=0.280 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 21 FADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 21 ~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
...+++|.--.++.++..|... ++.++.||++.+++ ++..+.+.|+.|...|+|....
T Consensus 7 ~~~fkaLadptRl~IL~~L~~~-~~~~v~ela~~l~l---sqstvS~HL~~L~~AGLV~~~r 64 (117)
T PRK10141 7 LQLFKILSDETRLGIVLLLRES-GELCVCDLCTALDQ---SQPKISRHLALLRESGLLLDRK 64 (117)
T ss_pred HHHHHHhCCHHHHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEE
Confidence 3456777777889999999753 68999999999999 8899999999999999998876
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.019 Score=54.63 Aligned_cols=99 Identities=16% Similarity=0.174 Sum_probs=68.1
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC--C-C
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD--A-I 242 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~--~-~ 242 (350)
.....+.+. ..+..+|+|+=||.|.++..|+++ ..+++++++ +++++.|++ -++++|+.++.++ + .
T Consensus 282 ~~~a~~~~~--~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~ 357 (432)
T COG2265 282 YETALEWLE--LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAW 357 (432)
T ss_pred HHHHHHHHh--hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhc
Confidence 344444444 567789999999999999999965 457888998 888887765 4559999999988 2 2
Q ss_pred C---CccEEEecchhccCChHHHH-HHHHHHHhhCCCCCceEEE
Q 018775 243 P---KADAVFMKWILHDWDDEACV-KILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 243 p---~~D~i~~~~vlh~~~~~~~~-~~L~~~~~~L~~pgG~lli 282 (350)
. .+|+|+. +-|..=+. .+++.+.+. + |-..++|
T Consensus 358 ~~~~~~d~Vvv-----DPPR~G~~~~~lk~l~~~-~-p~~IvYV 394 (432)
T COG2265 358 WEGYKPDVVVV-----DPPRAGADREVLKQLAKL-K-PKRIVYV 394 (432)
T ss_pred cccCCCCEEEE-----CCCCCCCCHHHHHHHHhc-C-CCcEEEE
Confidence 1 3799887 33322223 455555554 4 5555554
|
|
| >COG3355 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.012 Score=45.47 Aligned_cols=48 Identities=15% Similarity=0.326 Sum_probs=40.4
Q ss_pred hcChhhhhh-hCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeeccc
Q 018775 32 ELRLADIMH-SHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQS 83 (350)
Q Consensus 32 ~lglfd~L~-~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 83 (350)
+..+|.+|- .+ +|.|+++||+.++. +...+.|-|+-|...|++.++..
T Consensus 29 Dv~v~~~LL~~~-~~~tvdelae~lnr---~rStv~rsl~~L~~~GlV~Rek~ 77 (126)
T COG3355 29 DVEVYKALLEEN-GPLTVDELAEILNR---SRSTVYRSLQNLLEAGLVEREKV 77 (126)
T ss_pred HHHHHHHHHhhc-CCcCHHHHHHHHCc---cHHHHHHHHHHHHHcCCeeeeee
Confidence 344555554 33 89999999999999 88999999999999999999874
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.099 Score=47.67 Aligned_cols=98 Identities=20% Similarity=0.212 Sum_probs=72.0
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEec-cCCC-CCCC--ccEEEec-
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGG-DMFD-AIPK--ADAVFMK- 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~-d~~~-~~p~--~D~i~~~- 251 (350)
..++..|||==||||.++++..-- ++++++.|+ ..+++-++. -....+... |+.. |+++ +|.|++-
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 567889999999999999887654 788999999 788887765 133444444 8888 7775 9999871
Q ss_pred -----chhccCC-hHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 252 -----WILHDWD-DEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 252 -----~vlh~~~-~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
....-.. ++-..++|..+.++|+ +||++++.-
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk-~gG~~vf~~ 310 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLK-PGGRIVFAA 310 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhh-cCcEEEEec
Confidence 1111111 2335688999999999 999988644
|
|
| >TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.037 Score=42.64 Aligned_cols=69 Identities=19% Similarity=0.261 Sum_probs=52.2
Q ss_pred HHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 30 AVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 30 ~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
..++.++..|... +++|..+||+.+++ +...+.+.++-|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 28 ~~q~~iL~~l~~~-~~~t~~ela~~~~~---~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~ 96 (118)
T TIGR02337 28 EQQWRILRILAEQ-GSMEFTQLANQACI---LRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALY 96 (118)
T ss_pred HHHHHHHHHHHHc-CCcCHHHHHHHhCC---CchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHH
Confidence 4445677778765 69999999999999 788999999999999999997522111012588888777544
|
This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.035 Score=52.76 Aligned_cols=131 Identities=16% Similarity=0.223 Sum_probs=85.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hh----HhhhCCCCCCeEEEeccCCCCC---CC-ccEEEecchh
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PH----VVATAPVCEGIFHVGGDMFDAI---PK-ADAVFMKWIL 254 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~----~~~~a~~~~~i~~~~~d~~~~~---p~-~D~i~~~~vl 254 (350)
......|+|..+|.|.|+.+|... | +.+++. |. .+...-+ ..+-=+.+|.-+++ |. ||++...+++
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIyd-RGLIG~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYD-RGLIGVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhh-cccchhccchhhccCCCCcchhheehhhhh
Confidence 456789999999999999999763 3 444433 32 1111111 01111334555544 43 9999999999
Q ss_pred ccCChH-HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCcee
Q 018775 255 HDWDDE-ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRC 333 (350)
Q Consensus 255 h~~~~~-~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~ 333 (350)
..+.+. +...+|-++-|+|+ |||.++|-|..- ..+++++++..-.|+..
T Consensus 438 s~~~~rC~~~~illEmDRILR-P~G~~iiRD~~~-----------------------------vl~~v~~i~~~lrW~~~ 487 (506)
T PF03141_consen 438 SLYKDRCEMEDILLEMDRILR-PGGWVIIRDTVD-----------------------------VLEKVKKIAKSLRWEVR 487 (506)
T ss_pred hhhcccccHHHHHHHhHhhcC-CCceEEEeccHH-----------------------------HHHHHHHHHHhCcceEE
Confidence 887544 56788999999999 999999854211 14666777777777755
Q ss_pred EEEEcCC---ceeEEEEee
Q 018775 334 KIISMPA---LYSIIEAYP 349 (350)
Q Consensus 334 ~~~~~~~---~~~vi~~~~ 349 (350)
....-.+ ...++.|+|
T Consensus 488 ~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 488 IHDTEDGPDGPEKILICQK 506 (506)
T ss_pred EEecCCCCCCCceEEEEEC
Confidence 4444333 467888876
|
; GO: 0008168 methyltransferase activity |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.083 Score=45.54 Aligned_cols=99 Identities=17% Similarity=0.296 Sum_probs=73.9
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCC----CcEEEecc-hhHhhhC-----CCCC--CeEEEeccCCCC---CCC--c-
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPH----IKGINFDL-PHVVATA-----PVCE--GIFHVGGDMFDA---IPK--A- 245 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~----~~~~~~D~-~~~~~~a-----~~~~--~i~~~~~d~~~~---~p~--~- 245 (350)
..+...++|+|+|+..=+..|...+.. .+++-+|. ..+++.- ++.. .+.-+++|+..+ .|. -
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~R 155 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRR 155 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeE
Confidence 345889999999999888888877655 78898998 5554421 2233 344567888763 332 2
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
=.++....|-++++.++..+|.+++.+|+ ||-.+++-
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~-pGd~~LlG 192 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALR-PGDYFLLG 192 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCC-CcceEEEe
Confidence 23456788999999999999999999999 99999883
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.059 Score=46.99 Aligned_cols=98 Identities=17% Similarity=0.170 Sum_probs=63.8
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC------------CCCeEEEeccCCCC------CCC-cc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV------------CEGIFHVGGDMFDA------IPK-AD 246 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------~~~i~~~~~d~~~~------~p~-~D 246 (350)
...+||++|+|+|..++..+. .....++.-|.+..++..+. ...+.+...+-..+ .|. +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 467899999999966655554 45678888887665554331 23555555444331 234 89
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
+|+.+.++++ +.....++.-++..|. .++.+++.-...
T Consensus 165 lilasDvvy~--~~~~e~Lv~tla~ll~-~~~~i~l~~~lr 202 (248)
T KOG2793|consen 165 LILASDVVYE--EESFEGLVKTLAFLLA-KDGTIFLAYPLR 202 (248)
T ss_pred EEEEeeeeec--CCcchhHHHHHHHHHh-cCCeEEEEEecc
Confidence 9999999987 3334567777888888 777555443333
|
|
| >smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.025 Score=41.85 Aligned_cols=67 Identities=19% Similarity=0.360 Sum_probs=49.1
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.++..|... ++.+..+||+.+++ +...+.+.|+-|+..|+|.+.....+.....|.+|+.+..+.
T Consensus 12 ~~~il~~l~~~-~~~~~~~la~~~~~---s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~ 78 (101)
T smart00347 12 QFLVLRILYEE-GPLSVSELAKRLGV---SPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELI 78 (101)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCC---CchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHH
Confidence 45566677654 58999999999999 788999999999999999987521111123577777665443
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.4 Score=41.50 Aligned_cols=121 Identities=16% Similarity=0.086 Sum_probs=66.6
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCCCC-----ccEEEecchh
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAIPK-----ADAVFMKWIL 254 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~p~-----~D~i~~~~vl 254 (350)
.+++||=|| -.=.++++++...+..+++++|+ +..++..++ .-.|+.+..|+.+++|+ ||+++.--
T Consensus 44 ~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDP-- 120 (243)
T PF01861_consen 44 EGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDP-- 120 (243)
T ss_dssp TT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCC--
Confidence 478999998 44455666776677789999999 666665543 44599999999998763 99999832
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCH---HHHHHHHHhcCCc
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTE---QEWMKLLEQGGFH 331 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~e~~~ll~~aGf~ 331 (350)
-+..+-..-++.+..++|+.+|+..++ -... +..|. -++++.+.+.||.
T Consensus 121 -PyT~~G~~LFlsRgi~~Lk~~g~~gy~-~~~~--------------------------~~~s~~~~~~~Q~~l~~~gl~ 172 (243)
T PF01861_consen 121 -PYTPEGLKLFLSRGIEALKGEGCAGYF-GFTH--------------------------KEASPDKWLEVQRFLLEMGLV 172 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEE-EE-T--------------------------TT--HHHHHHHHHHHHTS--E
T ss_pred -CCCHHHHHHHHHHHHHHhCCCCceEEE-EEec--------------------------CcCcHHHHHHHHHHHHHCCcC
Confidence 122345678899999999944444332 1111 11122 3456777788888
Q ss_pred eeEEEE
Q 018775 332 RCKIIS 337 (350)
Q Consensus 332 ~~~~~~ 337 (350)
+..++|
T Consensus 173 i~dii~ 178 (243)
T PF01861_consen 173 ITDIIP 178 (243)
T ss_dssp EEEEEE
T ss_pred HHHHHh
Confidence 777766
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.037 Score=49.98 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=61.3
Q ss_pred hHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-C--C
Q 018775 172 VMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-A--I 242 (350)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~--~ 242 (350)
+..++++.+. ..++..++|.=+|.|..+..++++.|+.+++++|. +.+++.+++ .+|++++++++.+ . .
T Consensus 8 ll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l 85 (305)
T TIGR00006 8 LLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHL 85 (305)
T ss_pred hHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHH
Confidence 3456777776 56778999999999999999999988899999999 888887764 4589999988875 2 1
Q ss_pred -----CCccEEEe
Q 018775 243 -----PKADAVFM 250 (350)
Q Consensus 243 -----p~~D~i~~ 250 (350)
..+|.|++
T Consensus 86 ~~~~~~~vDgIl~ 98 (305)
T TIGR00006 86 DELLVTKIDGILV 98 (305)
T ss_pred HhcCCCcccEEEE
Confidence 23677766
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.022 Score=42.46 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=26.6
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL 218 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~ 218 (350)
.+...++|||||.|.+.--|.+. +.++.++|.
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 46789999999999999888876 567888884
|
; GO: 0008168 methyltransferase activity |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.0052 Score=48.83 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=43.2
Q ss_pred eEEEeccCCC-CCC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 231 IFHVGGDMFD-AIP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 231 i~~~~~d~~~-~~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
+.+++....+ ++. +.|+|.+.+|+.|+.-++-...++.+++.|| |||+|-|.-+
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lr-p~G~LriAvP 87 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLR-PGGKLRIAVP 87 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-cCcEEEEEcC
Confidence 4444443333 443 3999999999999999999999999999999 9999988543
|
|
| >COG1959 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.02 Score=46.21 Aligned_cols=49 Identities=16% Similarity=0.381 Sum_probs=42.0
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
++.|+++||++.|+ ++..|+++|..|...|+|+-..+ ++|.|+++....
T Consensus 24 ~~~s~~~IA~~~~i---s~~~L~kil~~L~kaGlV~S~rG----~~GGy~Lar~~~ 72 (150)
T COG1959 24 GPVSSAEIAERQGI---SPSYLEKILSKLRKAGLVKSVRG----KGGGYRLARPPE 72 (150)
T ss_pred CcccHHHHHHHhCc---CHHHHHHHHHHHHHcCCEEeecC----CCCCccCCCChH
Confidence 38999999999999 89999999999999999998873 258898775443
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.15 Score=47.13 Aligned_cols=105 Identities=19% Similarity=0.165 Sum_probs=70.5
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCC---------------------------------------cEE
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHI---------------------------------------KGI 214 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~---------------------------------------~~~ 214 (350)
..++..-. +.+...++|==||+|.++++.+...+++ .++
T Consensus 181 aAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 181 AAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 33444344 4566899999999999999987766532 267
Q ss_pred Eecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC--CccEEEec--chhccCChHHHH-----HHHHHHHhhCCCC
Q 018775 215 NFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP--KADAVFMK--WILHDWDDEACV-----KILKNCRQAIPDK 276 (350)
Q Consensus 215 ~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p--~~D~i~~~--~vlh~~~~~~~~-----~~L~~~~~~L~~p 276 (350)
++|+ +.+++.|+. .+.|+|..+|+.. ..| .+|+|+++ +-.- +.++..+ .+.+.+++.++ -
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR-lg~~~~v~~LY~~fg~~lk~~~~-~ 336 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER-LGSEALVAKLYREFGRTLKRLLA-G 336 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchh-cCChhhHHHHHHHHHHHHHHHhc-C
Confidence 9998 888887764 6889999999997 444 69999985 2221 2233222 34455666666 5
Q ss_pred CceEEE
Q 018775 277 SGKLVL 282 (350)
Q Consensus 277 gG~lli 282 (350)
.++.++
T Consensus 337 ws~~v~ 342 (381)
T COG0116 337 WSRYVF 342 (381)
T ss_pred CceEEE
Confidence 556555
|
|
| >PRK03902 manganese transport transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.029 Score=44.83 Aligned_cols=50 Identities=8% Similarity=0.061 Sum_probs=43.8
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.++.+||+.+++ ++..+.+.|+.|...|+|.+.. .+.|++|+.+..+.
T Consensus 21 ~~~~~~ela~~l~v---s~~svs~~l~~L~~~Gli~~~~------~~~i~LT~~G~~~a 70 (142)
T PRK03902 21 GYARVSDIAEALSV---HPSSVTKMVQKLDKDEYLIYEK------YRGLVLTPKGKKIG 70 (142)
T ss_pred CCcCHHHHHHHhCC---ChhHHHHHHHHHHHCCCEEEec------CceEEECHHHHHHH
Confidence 78999999999999 7899999999999999999765 47799999886443
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.025 Score=50.71 Aligned_cols=95 Identities=15% Similarity=0.193 Sum_probs=68.0
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--------CCCeEEEeccCCCC------CCCccEEEe
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--------CEGIFHVGGDMFDA------IPKADAVFM 250 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~~------~p~~D~i~~ 250 (350)
.+.+|||+=|=||.++...+.. ...+++.+|. ..+++.+++ ..+++++..|+++- ...||+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4789999999999999986664 2347899998 777776654 46899999999872 125999998
Q ss_pred ---cchhccCC-hHHHHHHHHHHHhhCCCCCceEEE
Q 018775 251 ---KWILHDWD-DEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 251 ---~~vlh~~~-~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
.+.=..+. ..+-..+++++.++|+ |||.|+.
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~-~gG~l~~ 236 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLK-PGGLLLT 236 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEE-EEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcC-CCCEEEE
Confidence 11111111 2345678999999999 9999875
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.044 Score=43.26 Aligned_cols=104 Identities=14% Similarity=0.213 Sum_probs=67.1
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCCCc
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIPKA 245 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p~~ 245 (350)
++++.+. .++..+.+|+|+|.|....+.++.. -...+++++ |..+...+- ..+..|...|+++ ++.+|
T Consensus 63 nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 63 NVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHcc--CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 3444455 4566899999999999998877764 456788888 665554432 6788999999999 77765
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
.-++.+.+=.- ...+-.+++.-++ .|.+++---+-+
T Consensus 140 ~~vviFgaes~-----m~dLe~KL~~E~p-~nt~vvacRFPL 175 (199)
T KOG4058|consen 140 RNVVIFGAESV-----MPDLEDKLRTELP-ANTRVVACRFPL 175 (199)
T ss_pred ceEEEeehHHH-----HhhhHHHHHhhCc-CCCeEEEEecCC
Confidence 43333221111 1223446676777 777776544333
|
|
| >PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.013 Score=39.34 Aligned_cols=47 Identities=21% Similarity=0.408 Sum_probs=38.7
Q ss_pred hcChhhhhhhCCCC--CCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSP--ITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~--~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
++.++-.|... ++ +|+.|||+.+++ ++..+.+.++.|+..|+|++..
T Consensus 7 q~~vL~~l~~~-~~~~~t~~~la~~l~~---~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 7 QFRVLMALARH-PGEELTQSELAERLGI---SKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp HHHHHHHHHHS-TTSGEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHC-CCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC
Confidence 34455566654 34 899999999999 8899999999999999999986
|
... |
| >PHA00738 putative HTH transcription regulator | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.026 Score=42.00 Aligned_cols=48 Identities=6% Similarity=0.221 Sum_probs=42.9
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..+++.|... +++++.+|++.+++ ....+.+.|+.|...|+|....
T Consensus 13 tRr~IL~lL~~~-e~~~V~eLae~l~l---SQptVS~HLKvLreAGLV~srK 60 (108)
T PHA00738 13 LRRKILELIAEN-YILSASLISHTLLL---SYTTVLRHLKILNEQGYIELYK 60 (108)
T ss_pred HHHHHHHHHHHc-CCccHHHHHHhhCC---CHHHHHHHHHHHHHCCceEEEE
Confidence 567788888763 47999999999999 8999999999999999999887
|
|
| >TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.027 Score=44.66 Aligned_cols=48 Identities=21% Similarity=0.418 Sum_probs=40.1
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHIS 98 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s 98 (350)
++.|.++||+.+++ ++..++++|..|...|++....+ ..|.|.++...
T Consensus 24 ~~~s~~~ia~~~~i---p~~~l~kil~~L~~~glv~s~~G----~~Ggy~l~~~~ 71 (135)
T TIGR02010 24 GPVTLADISERQGI---SLSYLEQLFAKLRKAGLVKSVRG----PGGGYQLGRPA 71 (135)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEeC----CCCCEeccCCH
Confidence 58999999999999 89999999999999999987542 14678866533
|
This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. |
| >PRK11920 rirA iron-responsive transcriptional regulator; Reviewed | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.036 Score=44.90 Aligned_cols=48 Identities=13% Similarity=0.243 Sum_probs=41.5
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHIS 98 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s 98 (350)
+++|.++||++.++ ++..|+++|..|...|||.-..+ ..|+|+++...
T Consensus 23 ~~~s~~eIA~~~~i---s~~~L~kIl~~L~~aGlv~S~rG----~~GGy~La~~p 70 (153)
T PRK11920 23 KLSRIPEIARAYGV---SELFLFKILQPLVEAGLVETVRG----RNGGVRLGRPA 70 (153)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeecC----CCCCeeecCCH
Confidence 57899999999999 89999999999999999998873 25789876543
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.11 Score=43.12 Aligned_cols=95 Identities=13% Similarity=0.031 Sum_probs=62.0
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C----CCCccEEEec
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A----IPKADAVFMK 251 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~----~p~~D~i~~~ 251 (350)
.+.++||+=+|+|.++++-+.+.. .+++.+|. ..++...++ ..++.++..|... . .++||+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 589999999999999999888864 36777776 555544432 5788888888884 1 1239999983
Q ss_pred chhc-cCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 252 WILH-DWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 252 ~vlh-~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
-=.+ .+-+....-++-.-...|+ |+|.+++
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~-~~~~iv~ 152 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLK-PGALIVV 152 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcC-CCcEEEE
Confidence 3222 1112222222223557799 9887665
|
|
| >PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.012 Score=39.05 Aligned_cols=46 Identities=22% Similarity=0.425 Sum_probs=38.3
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+.++..|.+. +++|..+||+.+++ +...+.++++.|+..|++++..
T Consensus 6 ~~iL~~l~~~-~~~~~~~la~~~~~---~~~~~t~~i~~L~~~g~I~r~~ 51 (59)
T PF01047_consen 6 FRILRILYEN-GGITQSELAEKLGI---SRSTVTRIIKRLEKKGLIERER 51 (59)
T ss_dssp HHHHHHHHHH-SSEEHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEecc
Confidence 3444555554 68999999999999 8999999999999999999986
|
This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A .... |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.26 Score=46.86 Aligned_cols=96 Identities=23% Similarity=0.241 Sum_probs=71.9
Q ss_pred ceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhC-----CCCCCeEEEeccCCC-CCC--CccEEEecchhccC
Q 018775 188 QSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATA-----PVCEGIFHVGGDMFD-AIP--KADAVFMKWILHDW 257 (350)
Q Consensus 188 ~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a-----~~~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~ 257 (350)
.+++-+|||.-.++..+-+. |. .++-+|. +.+++.. +....+.+...|+.+ .++ +||+++....++++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccc
Confidence 49999999999998887775 34 3555566 4444433 235678888999998 665 49999999999985
Q ss_pred C-hH-------HHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 258 D-DE-------ACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 258 ~-~~-------~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
- ++ .+...+.++.++++ |||+.+.+-..
T Consensus 128 ~~de~a~~~~~~v~~~~~eVsrvl~-~~gk~~svtl~ 163 (482)
T KOG2352|consen 128 FEDEDALLNTAHVSNMLDEVSRVLA-PGGKYISVTLV 163 (482)
T ss_pred cCCchhhhhhHHhhHHHhhHHHHhc-cCCEEEEEEee
Confidence 2 22 23456889999999 99999887773
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.072 Score=49.02 Aligned_cols=110 Identities=17% Similarity=0.261 Sum_probs=75.7
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc---hhHhhhCC-------------CCCCeEEEeccC
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL---PHVVATAP-------------VCEGIFHVGGDM 238 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~-------------~~~~i~~~~~d~ 238 (350)
.+.+.+. ..+.....|+|+|.|.....++.....-.-+|+.+ |.-+...+ +...++.+++++
T Consensus 183 si~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf 260 (419)
T KOG3924|consen 183 SIVDELK--LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF 260 (419)
T ss_pred HHHHHhc--cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence 3445555 67889999999999999887776443333344433 33222211 156788999999
Q ss_pred CCC------CCCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCC
Q 018775 239 FDA------IPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQED 290 (350)
Q Consensus 239 ~~~------~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~ 290 (350)
..+ .+.+++|+.+++..+ + +..-=+.++..-++ +|-+++-.+...+.+
T Consensus 261 ~~~~~v~eI~~eatvi~vNN~~Fd--p-~L~lr~~eil~~ck-~gtrIiS~~~L~~r~ 314 (419)
T KOG3924|consen 261 LDPKRVTEIQTEATVIFVNNVAFD--P-ELKLRSKEILQKCK-DGTRIISSKPLVPRP 314 (419)
T ss_pred CCHHHHHHHhhcceEEEEecccCC--H-HHHHhhHHHHhhCC-CcceEeccccccccc
Confidence 984 245999999998874 3 33333558888889 999999888887743
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.27 Score=45.78 Aligned_cols=105 Identities=16% Similarity=0.227 Sum_probs=72.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCC--CcEEEecc-hhHhhhCC----C--CCCeEEEeccCCC-C--CC---CccEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPH--IKGINFDL-PHVVATAP----V--CEGIFHVGGDMFD-A--IP---KADAV 248 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~----~--~~~i~~~~~d~~~-~--~p---~~D~i 248 (350)
..++.+|||..++.|.=+..+++..++ ..++.+|. +.-++..+ + ..++.++..|... + .+ .||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 677899999999999999999998766 45588887 54444332 2 3446777777654 1 22 28988
Q ss_pred Ee------cchh-------ccCChHH-------HHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 249 FM------KWIL-------HDWDDEA-------CVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 249 ~~------~~vl-------h~~~~~~-------~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
++ ..++ ..+...+ -.++|+.+.+.|| |||+|+-....+..
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk-~GG~LVYSTCS~~~ 293 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLK-PGGVLVYSTCSLTP 293 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEccCCch
Confidence 87 2344 2233332 2378999999999 99999876655544
|
|
| >TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator) | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.036 Score=43.60 Aligned_cols=48 Identities=21% Similarity=0.458 Sum_probs=39.7
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHIS 98 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s 98 (350)
++.|.++||+.+++ ++..++++|+.|...|++....+. ++.|.++...
T Consensus 24 ~~~s~~eia~~~~i---~~~~v~~il~~L~~~gli~~~~g~----~ggy~l~~~~ 71 (132)
T TIGR00738 24 GPVSVKEIAERQGI---SRSYLEKILRTLRRAGLVESVRGP----GGGYRLARPP 71 (132)
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEeccCC----CCCccCCCCH
Confidence 59999999999999 899999999999999999876311 3578766443
|
This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency. |
| >TIGR00122 birA_repr_reg BirA biotin operon repressor domain | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.047 Score=37.61 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=43.7
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhc
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHIS 98 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s 98 (350)
+.++..|.+ ++.+.++||+.+|+ +...+++-++.|.+.|+..... +.+|++....
T Consensus 3 ~~il~~L~~--~~~~~~eLa~~l~v---S~~tv~~~l~~L~~~g~~i~~~------~~g~~l~~~~ 57 (69)
T TIGR00122 3 LRLLALLAD--NPFSGEKLGEALGM---SRTAVNKHIQTLREWGVDVLTV------GKGYRLPPPI 57 (69)
T ss_pred HHHHHHHHc--CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec------CCceEecCcc
Confidence 456777876 68999999999999 8899999999999999965544 2566665433
|
This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value. |
| >PRK11512 DNA-binding transcriptional repressor MarR; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.25 Score=39.46 Aligned_cols=67 Identities=19% Similarity=0.224 Sum_probs=48.2
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.++..|... +++|..+||+.+++ ++..+.+.++.|+..|+|.+.....+.-.-...+|+.+..+.
T Consensus 42 q~~vL~~l~~~-~~~t~~eLa~~l~i---~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~~~ 108 (144)
T PRK11512 42 QFKVLCSIRCA-ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAIC 108 (144)
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHHHH
Confidence 34557777654 68999999999999 889999999999999999998521110011356666665443
|
|
| >PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.058 Score=34.95 Aligned_cols=43 Identities=28% Similarity=0.312 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHh
Q 018775 23 DSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRML 72 (350)
Q Consensus 23 ~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L 72 (350)
.-.+|.+|.+.|.||. + -..|.+|||+.+|+ ++..+...||-.
T Consensus 5 Q~e~L~~A~~~GYfd~-P---R~~tl~elA~~lgi---s~st~~~~LRra 47 (53)
T PF04967_consen 5 QREILKAAYELGYFDV-P---RRITLEELAEELGI---SKSTVSEHLRRA 47 (53)
T ss_pred HHHHHHHHHHcCCCCC-C---CcCCHHHHHHHhCC---CHHHHHHHHHHH
Confidence 4578999999999996 2 47899999999999 677777777654
|
This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator. |
| >TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.047 Score=46.53 Aligned_cols=66 Identities=12% Similarity=0.172 Sum_probs=49.1
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeeccc-CCCC-CCCeEecChhchhhh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQS-SDGG-DETLYKMTHISKWLL 102 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~-~~~~-~~~~~~~t~~s~~l~ 102 (350)
..|+..|... +++|..+||+.+++ ++..+++.|+.|...|+|.+... ...+ +...|++|+.+..+.
T Consensus 4 ~~IL~~L~~~-~~~t~~eLA~~lgi---s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~ 71 (203)
T TIGR02702 4 EDILSYLLKQ-GQATAAALAEALAI---SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQF 71 (203)
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhc
Confidence 3466667554 68999999999999 88999999999999999998731 1111 122478887776444
|
All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus. |
| >PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.053 Score=35.40 Aligned_cols=40 Identities=20% Similarity=0.303 Sum_probs=32.7
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCC
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKG 76 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g 76 (350)
.++..|..+.+++|.++||+.+++ +.+.+++-+..|...|
T Consensus 4 ~il~~L~~~~~~it~~eLa~~l~v---S~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 4 QILKLLLESKEPITAKELAEELGV---SRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHHTTTSBEHHHHHHHCTS----HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcCHHHHHHHhCC---CHHHHHHHHHHHHHCC
Confidence 355566333367999999999999 8999999999999999
|
The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A .... |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.062 Score=48.52 Aligned_cols=67 Identities=18% Similarity=0.272 Sum_probs=50.9
Q ss_pred hHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC
Q 018775 172 VMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD 240 (350)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~ 240 (350)
+..++++.+. ..++..++|.=-|.|+.+..+++++|+.+++++|. |.+++.+++ .+|+.++..+|.+
T Consensus 8 ll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 8 LLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp THHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred cHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 4566777776 67788999999999999999999999999999999 888877654 5789998888764
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.06 Score=34.48 Aligned_cols=44 Identities=11% Similarity=0.270 Sum_probs=37.8
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+++.|... ++.+..+|++.+++ +...+++.|..|...|++.+..
T Consensus 5 il~~l~~~-~~~s~~~l~~~l~~---s~~tv~~~l~~L~~~g~i~~~~ 48 (53)
T smart00420 5 ILELLAQQ-GKVSVEELAELLGV---SEMTIRRDLNKLEEQGLLTRVH 48 (53)
T ss_pred HHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEee
Confidence 44555544 68999999999999 8899999999999999999876
|
|
| >COG1321 TroR Mn-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.065 Score=43.38 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=45.4
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+++...+||+.+++ .+..+..+++-|...|++.... .+.+.+|+.+....
T Consensus 23 ~~~~~~diA~~L~V---sp~sVt~ml~rL~~~GlV~~~~------y~gi~LT~~G~~~a 72 (154)
T COG1321 23 GFARTKDIAERLKV---SPPSVTEMLKRLERLGLVEYEP------YGGVTLTEKGREKA 72 (154)
T ss_pred CcccHHHHHHHhCC---CcHHHHHHHHHHHHCCCeEEec------CCCeEEChhhHHHH
Confidence 79999999999999 7788999999999999999987 58899998887554
|
|
| >TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.042 Score=43.18 Aligned_cols=46 Identities=17% Similarity=0.406 Sum_probs=38.2
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
++.|+.|||+++++ ++..+.+.|+.|...|++....+. .+.|.+..
T Consensus 24 ~~~s~~eia~~l~i---s~~~v~~~l~~L~~~Gli~~~~g~----~ggy~l~~ 69 (130)
T TIGR02944 24 QPYSAAEIAEQTGL---NAPTVSKILKQLSLAGIVTSKRGV----EGGYTLAR 69 (130)
T ss_pred CCccHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEecCCC----CCChhhcC
Confidence 68999999999999 899999999999999999875311 35676543
|
The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role. |
| >PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.043 Score=40.12 Aligned_cols=63 Identities=17% Similarity=0.277 Sum_probs=47.0
Q ss_pred hhhhhhhCCCCCCHHHHHhhc-CCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 35 LADIMHSHGSPITLPQLASRI-DSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
|+..|.. ++....||.+.+ ++ ++..|.+-|+.|+..|++.+.......+.-.|++|+.+..+.
T Consensus 10 IL~~l~~--g~~rf~el~~~l~~i---s~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 10 ILRALFQ--GPMRFSELQRRLPGI---SPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELL 73 (90)
T ss_dssp HHHHHTT--SSEEHHHHHHHSTTS----HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHH
T ss_pred HHHHHHh--CCCcHHHHHHhcchh---HHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHH
Confidence 4455555 799999999999 88 889999999999999999997532111123599999887665
|
The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D. |
| >PRK11050 manganese transport regulator MntR; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.07 Score=43.22 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=47.0
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
|...+... ++.+..+||+.+++ +...+.++|+.|...|+|.+.. ...+.+|+.+..+.
T Consensus 42 I~~~l~~~-~~~t~~eLA~~l~i---s~stVsr~l~~Le~~GlI~r~~------~~~v~LT~~G~~l~ 99 (152)
T PRK11050 42 IADLIAEV-GEARQVDIAARLGV---SQPTVAKMLKRLARDGLVEMRP------YRGVFLTPEGEKLA 99 (152)
T ss_pred HHHHHHhc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec------CCceEECchHHHHH
Confidence 44555543 68999999999999 8899999999999999999875 35688887776443
|
|
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.099 Score=43.76 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=61.2
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC---------CCCeEEEeccCCC-CC----------CC-
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV---------CEGIFHVGGDMFD-AI----------PK- 244 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~i~~~~~d~~~-~~----------p~- 244 (350)
+...|+-+|||-=....++....++++++-+|+|++++.-++ ..+.+++..|+.+ .. ++
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 345999999999999999998878899999999988775443 1235689999997 21 11
Q ss_pred ccEEEecchhccCChHHHHHHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNC 269 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~ 269 (350)
.-++++..++.+++.+++..+|+.+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 4488889999999999999998876
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.14 Score=34.44 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=31.2
Q ss_pred CCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 46 ITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 46 ~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.|..+||+.+++ +...+++.|..|...|++....
T Consensus 26 ~~~~~la~~~~i---s~~~v~~~l~~L~~~G~i~~~~ 59 (66)
T cd07377 26 PSERELAEELGV---SRTTVREALRELEAEGLVERRP 59 (66)
T ss_pred CCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC
Confidence 359999999999 8899999999999999998775
|
This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is |
| >COG4742 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.081 Score=46.32 Aligned_cols=67 Identities=13% Similarity=0.287 Sum_probs=58.3
Q ss_pred HHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 24 SMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 24 ~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
-.++...-+.+++-.|.+ ||.|.+||-..+++ +...+..=|+-|...|++.+++ +.|++|+.+..++
T Consensus 7 ~~if~SekRk~lLllL~e--gPkti~EI~~~l~v---s~~ai~pqiKkL~~~~LV~~~~-------~~Y~LS~~G~iiv 73 (260)
T COG4742 7 DLLFLSEKRKDLLLLLKE--GPKTIEEIKNELNV---SSSAILPQIKKLKDKGLVVQEG-------DRYSLSSLGKIIV 73 (260)
T ss_pred HHHHccHHHHHHHHHHHh--CCCCHHHHHHHhCC---CcHHHHHHHHHHhhCCCEEecC-------CEEEecchHHHHH
Confidence 345666778889999987 89999999999999 7788999999999999999996 8999998777555
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.38 Score=44.37 Aligned_cols=148 Identities=20% Similarity=0.256 Sum_probs=76.8
Q ss_pred CCCcceEEEecCCchHHHHHHHHH--------C--------CCCcEEEecchh-----HhhhCCC-------CCC--eEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKS--------Y--------PHIKGINFDLPH-----VVATAPV-------CEG--IFH 233 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~--------~--------p~~~~~~~D~~~-----~~~~a~~-------~~~--i~~ 233 (350)
.++..+|+|+||.+|..+..+... + |.+++..-|+|. ....... ... +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 467889999999999988765441 1 235667777752 1111100 122 344
Q ss_pred EeccCCC-CCCC--ccEEEecchhccCC-------h------------------------------HHHHHHHHHHHhhC
Q 018775 234 VGGDMFD-AIPK--ADAVFMKWILHDWD-------D------------------------------EACVKILKNCRQAI 273 (350)
Q Consensus 234 ~~~d~~~-~~p~--~D~i~~~~vlh~~~-------~------------------------------~~~~~~L~~~~~~L 273 (350)
++|.|.. -+|+ .|++++++.||-++ + ++...+|+.=++=|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 6788888 4664 89999999998653 1 11223344333446
Q ss_pred CCCCceEEEEeeeecCCCCCcccc--c-----chhhhhhHhhhcCC---------cccCCHHHHHHHHHhcC-Cce
Q 018775 274 PDKSGKLVLVEIVVQEDGNNIFGD--M-----GLVFDLVMFAHTTG---------GKERTEQEWMKLLEQGG-FHR 332 (350)
Q Consensus 274 ~~pgG~lli~e~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~---------~~~~s~~e~~~ll~~aG-f~~ 332 (350)
+ |||++++.-...++........ . ..+.++.-.+.... -..++.+|+++.+++.| |++
T Consensus 174 v-~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I 248 (334)
T PF03492_consen 174 V-PGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEI 248 (334)
T ss_dssp E-EEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEE
T ss_pred c-cCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEE
Confidence 8 9999999888777732221100 0 01222211111110 12358999999999987 444
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.066 Score=45.64 Aligned_cols=58 Identities=17% Similarity=0.444 Sum_probs=47.1
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChh
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHI 97 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~ 97 (350)
++.++..|.+. ++.+..+||+.+++ ++..+.+.|+.|...|++.+.+.- ...|++|+.
T Consensus 145 ~~~IL~~l~~~-g~~s~~eia~~l~i---s~stv~r~L~~Le~~GlI~r~~~r----~~~~~lT~~ 202 (203)
T TIGR01884 145 ELKVLEVLKAE-GEKSVKNIAKKLGK---SLSTISRHLRELEKKGLVEQKGRK----GKRYSLTKL 202 (203)
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEcCC----ccEEEeCCC
Confidence 45667777664 58999999999999 888999999999999999998510 356887764
|
Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity. |
| >PRK11014 transcriptional repressor NsrR; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.077 Score=42.36 Aligned_cols=61 Identities=8% Similarity=0.184 Sum_probs=46.1
Q ss_pred HHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 25 MALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
.+|+..+.++.+. . +.+.+.++||+.+|+ +...+++.|..|...|++...... +|+|.++.
T Consensus 9 YAl~~~i~la~~~---~-g~~~s~~~ia~~~~i---s~~~vrk~l~~L~~~Glv~s~~G~----~GG~~l~~ 69 (141)
T PRK11014 9 YGLRALIYMASLP---E-GRMTSISEVTEVYGV---SRNHMVKIINQLSRAGYVTAVRGK----NGGIRLGK 69 (141)
T ss_pred HHHHHHHHHhcCC---C-CCccCHHHHHHHHCc---CHHHHHHHHHHHHhCCEEEEecCC----CCCeeecC
Confidence 3455555555432 2 257899999999999 889999999999999999988632 46787664
|
|
| >COG2345 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.054 Score=46.13 Aligned_cols=65 Identities=18% Similarity=0.374 Sum_probs=49.5
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccC-CCC-CCCeEecChhchhhh
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSS-DGG-DETLYKMTHISKWLL 102 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-~~~-~~~~~~~t~~s~~l~ 102 (350)
.|...|... +|+|+.|||+++|+ ++..+++.|+.|++.|+++..... +-| |.-.|++|..+....
T Consensus 15 ~il~lL~~~-g~~sa~elA~~Lgi---s~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~~f 81 (218)
T COG2345 15 RILELLKKS-GPVSADELAEELGI---SPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGREQF 81 (218)
T ss_pred HHHHHHhcc-CCccHHHHHHHhCC---CHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchhhc
Confidence 345566654 79999999999999 889999999999999999987322 112 234688888766433
|
|
| >smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.1 Score=34.41 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=32.9
Q ss_pred CCC-CHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPI-TLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
..+ |..+||+.+++ +...+++.|+.|...|++....
T Consensus 18 ~~l~s~~~la~~~~v---s~~tv~~~l~~L~~~g~i~~~~ 54 (60)
T smart00345 18 DKLPSERELAAQLGV---SRTTVREALSRLEAEGLVQRRP 54 (60)
T ss_pred CcCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 456 89999999999 8899999999999999998876
|
|
| >COG4190 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.076 Score=40.85 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=47.5
Q ss_pred HHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 24 SMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 24 ~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+.+-+=-.+.|++.+.+. +|.|+.|+|+.+|- +..++.|-|+.|+..|++..++
T Consensus 58 la~vLsp~nleLl~~Ia~~-~P~Si~ElAe~vgR---dv~nvhr~Ls~l~~~GlI~fe~ 112 (144)
T COG4190 58 LARVLSPRNLELLELIAQE-EPASINELAELVGR---DVKNVHRTLSTLADLGLIFFEE 112 (144)
T ss_pred HHHHhChhHHHHHHHHHhc-CcccHHHHHHHhCc---chHHHHHHHHHHHhcCeEEEec
Confidence 3344445567888999886 79999999999999 8999999999999999999987
|
|
| >PRK06266 transcription initiation factor E subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.11 Score=43.14 Aligned_cols=45 Identities=7% Similarity=0.143 Sum_probs=40.4
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeec
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVH 81 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 81 (350)
..|+++|... +++|.++||+.+|+ +...+++.|..|...|++...
T Consensus 25 ~~Vl~~L~~~-g~~tdeeLA~~Lgi---~~~~VRk~L~~L~e~gLv~~~ 69 (178)
T PRK06266 25 FEVLKALIKK-GEVTDEEIAEQTGI---KLNTVRKILYKLYDARLADYK 69 (178)
T ss_pred hHHHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEe
Confidence 4488888775 69999999999999 899999999999999999944
|
|
| >PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.057 Score=36.74 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=31.9
Q ss_pred CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 43 GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 43 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
|-|-|+.|||+.+|+. ++..+.+.|++|+..|+|.+..
T Consensus 23 G~~Pt~rEIa~~~g~~--S~~tv~~~L~~Le~kG~I~r~~ 60 (65)
T PF01726_consen 23 GYPPTVREIAEALGLK--STSTVQRHLKALERKGYIRRDP 60 (65)
T ss_dssp SS---HHHHHHHHTSS--SHHHHHHHHHHHHHTTSEEEGC
T ss_pred CCCCCHHHHHHHhCCC--ChHHHHHHHHHHHHCcCccCCC
Confidence 4577999999999994 5899999999999999999986
|
The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.061 Score=51.17 Aligned_cols=56 Identities=21% Similarity=0.259 Sum_probs=45.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCC
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDA 241 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~ 241 (350)
++.+..++|+-||||.++.++++.. .+++++++ |+.++.|+. -.+.+|++|-.++.
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeeecchhhc
Confidence 7778999999999999999998864 46888887 888887765 46789999955553
|
|
| >PRK03573 transcriptional regulator SlyA; Provisional | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.52 Score=37.60 Aligned_cols=66 Identities=21% Similarity=0.229 Sum_probs=46.9
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++..|...+++.|..+||+.+++ ++..+.+.++.|+..|+|++.....+.-.-...+|+.+..+.
T Consensus 35 ~vL~~l~~~~~~~t~~eLa~~l~~---~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 100 (144)
T PRK03573 35 VTLHNIHQLPPEQSQIQLAKAIGI---EQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLI 100 (144)
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHH
Confidence 356666543346899999999999 889999999999999999998521110011356776666444
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.022 Score=42.77 Aligned_cols=87 Identities=13% Similarity=0.241 Sum_probs=44.4
Q ss_pred ccEEEecchh----ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHH
Q 018775 245 ADAVFMKWIL----HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQE 320 (350)
Q Consensus 245 ~D~i~~~~vl----h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e 320 (350)
||+|+|..|- =++.|+-...+++++++.|+ |||.+++=-.-... +........ .+..... .-...+++
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~-pGG~lilEpQ~w~s-----Y~~~~~~~~-~~~~n~~-~i~lrP~~ 73 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLR-PGGILILEPQPWKS-----YKKAKRLSE-EIRENYK-SIKLRPDQ 73 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEE---HHH-----HHTTTTS-H-HHHHHHH-H----GGG
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhC-CCCEEEEeCCCcHH-----HHHHhhhhH-HHHhHHh-ceEEChHH
Confidence 8999886542 23578889999999999999 99998762111111 100000000 0101111 12234567
Q ss_pred HHHHHHh--cCCceeEEEEcC
Q 018775 321 WMKLLEQ--GGFHRCKIISMP 339 (350)
Q Consensus 321 ~~~ll~~--aGf~~~~~~~~~ 339 (350)
+.+.|.+ .||..++....+
T Consensus 74 F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 74 FEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp HHHHHTSTTT---EEEEE---
T ss_pred HHHHHHhcccceEEEEEcccC
Confidence 8887877 699988765543
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.059 Score=50.11 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=42.3
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDM 238 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~ 238 (350)
...+++.++ ..+. +|||+=||+|.++..|++... ++++++. +++++.|+. -++++|+.++.
T Consensus 186 ~~~~~~~l~--~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 186 YEQALEWLD--LSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHCT--T-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHhh--cCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 344455555 3344 899999999999999998754 6888898 888887764 46789987654
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG4189 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.098 Score=44.42 Aligned_cols=56 Identities=16% Similarity=0.347 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 23 DSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 23 ~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.-++|.+.++..+++.|... +|+.+.|||+++|+ +..-+..-+..|+..|+++-+.
T Consensus 16 v~kalaS~vRv~Il~lL~~k-~plNvneiAe~lgL---pqst~s~~ik~Le~aGlirT~t 71 (308)
T COG4189 16 VLKALASKVRVAILQLLHRK-GPLNVNEIAEALGL---PQSTMSANIKVLEKAGLIRTET 71 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCC---chhhhhhhHHHHHhcCceeeee
Confidence 45788899999999999987 79999999999999 7888999999999999998653
|
|
| >smart00344 HTH_ASNC helix_turn_helix ASNC type | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.087 Score=39.79 Aligned_cols=48 Identities=13% Similarity=0.286 Sum_probs=41.7
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..++..|... ++.|..+||+.+|+ ++..+++.++.|...|++.+..
T Consensus 4 ~D~~il~~L~~~-~~~~~~~la~~l~~---s~~tv~~~l~~L~~~g~i~~~~ 51 (108)
T smart00344 4 IDRKILEELQKD-ARISLAELAKKVGL---SPSTVHNRVKRLEEEGVIKGYT 51 (108)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeceE
Confidence 456778888775 68999999999999 8899999999999999999543
|
AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli |
| >PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.11 Score=34.75 Aligned_cols=37 Identities=22% Similarity=0.522 Sum_probs=33.8
Q ss_pred CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 43 GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 43 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+++++..+||+.+|+ .+..+...++-|...|++..+.
T Consensus 20 ~~~v~~~~iA~~L~v---s~~tvt~ml~~L~~~GlV~~~~ 56 (60)
T PF01325_consen 20 GGPVRTKDIAERLGV---SPPTVTEMLKRLAEKGLVEYEP 56 (60)
T ss_dssp TSSBBHHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET
T ss_pred CCCccHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEecC
Confidence 379999999999999 8899999999999999999885
|
The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A .... |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=93.21 E-value=1.2 Score=36.69 Aligned_cols=118 Identities=14% Similarity=0.205 Sum_probs=72.4
Q ss_pred ecCCchHHHHHHHHHCC---CCcEEEecc-hhHhhhCCC---------CCCeEEE-eccCCC---CC--C--CccEEEec
Q 018775 193 VGGGTGGALAEIVKSYP---HIKGINFDL-PHVVATAPV---------CEGIFHV-GGDMFD---AI--P--KADAVFMK 251 (350)
Q Consensus 193 vG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a~~---------~~~i~~~-~~d~~~---~~--p--~~D~i~~~ 251 (350)
||=|.=.++..|++++. ++.+|.+|. .++.+.-.. ...+++. .-|..+ .. . .||.|+.+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 56677778888888877 455677776 444443331 2334433 345554 12 1 39999885
Q ss_pred chhccCC-------------hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCH
Q 018775 252 WILHDWD-------------DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTE 318 (350)
Q Consensus 252 ~vlh~~~-------------~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 318 (350)
+ -|. . .+-...+++.+.++|+ ++|.+.|.-... ..++.
T Consensus 83 F-PH~-G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~-~~G~IhVTl~~~--------------------------~py~~ 133 (166)
T PF10354_consen 83 F-PHV-GGGSEDGKRNIRLNRELLRGFFKSASQLLK-PDGEIHVTLKDG--------------------------QPYDS 133 (166)
T ss_pred C-CCC-CCCccchhHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCCC--------------------------CCCcc
Confidence 3 222 2 2234578889999999 999998743211 11222
Q ss_pred HHHHHHHHhcCCceeEEEEcC
Q 018775 319 QEWMKLLEQGGFHRCKIISMP 339 (350)
Q Consensus 319 ~e~~~ll~~aGf~~~~~~~~~ 339 (350)
=.+.++.+++||..++..+..
T Consensus 134 W~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 134 WNIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred ccHHHHHHhcCCEEEEEecCC
Confidence 234467788999999988864
|
|
| >cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.15 Score=35.10 Aligned_cols=56 Identities=21% Similarity=0.460 Sum_probs=42.6
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
..++..+.. ++.+..||++.+++ +...+.+.|+.|.+.|++...... ....|++++
T Consensus 10 ~~il~~l~~--~~~~~~ei~~~~~i---~~~~i~~~l~~L~~~g~i~~~~~~---~~~~~~~~~ 65 (78)
T cd00090 10 LRILRLLLE--GPLTVSELAERLGL---SQSTVSRHLKKLEEAGLVESRREG---RRVYYSLTD 65 (78)
T ss_pred HHHHHHHHH--CCcCHHHHHHHHCc---CHhHHHHHHHHHHHCCCeEEEEec---cEEEEEeCC
Confidence 345666655 35999999999999 889999999999999999987521 124566664
|
ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions. |
| >smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.2 Score=33.37 Aligned_cols=42 Identities=10% Similarity=0.218 Sum_probs=36.2
Q ss_pred hhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 36 ADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 36 fd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..|.. ++.|..+|++.+++ +...+.+.|+.|...|++....
T Consensus 3 l~~l~~--~~~~~~~i~~~l~i---s~~~v~~~l~~L~~~g~i~~~~ 44 (66)
T smart00418 3 LKLLAE--GELCVCELAEILGL---SQSTVSHHLKKLREAGLVESRR 44 (66)
T ss_pred HHHhhc--CCccHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeeee
Confidence 444543 69999999999999 7889999999999999999765
|
|
| >cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.14 Score=39.26 Aligned_cols=51 Identities=12% Similarity=0.277 Sum_probs=40.0
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCC--CCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDS--SCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~--~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..|++.|...+++.|++||.+.+.- +..+...+.|.|+.|+..|++.+..
T Consensus 3 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~ 55 (116)
T cd07153 3 RLAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIE 55 (116)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEE
Confidence 34567777664478999999999831 1117789999999999999999975
|
Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions. |
| >smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.17 Score=37.27 Aligned_cols=46 Identities=15% Similarity=0.315 Sum_probs=39.9
Q ss_pred HHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 48 LPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 48 ~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+.+||+.+++ +...+.+.|+.|...|+|.+.. +..|.+|+.+..+.
T Consensus 2 ~~ela~~l~i---s~stvs~~l~~L~~~glI~r~~------~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNV---SPPTVTQMLKKLEKDGLVEYEP------YRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCC---ChHHHHHHHHHHHHCCCEEEcC------CCceEechhHHHHH
Confidence 5689999999 8899999999999999999997 46788888776543
|
iron dependent repressor |
| >TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.19 Score=38.09 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=46.6
Q ss_pred HhcChhhhhh--h-CCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCC---eEecChhchhh
Q 018775 31 VELRLADIMH--S-HGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDET---LYKMTHISKWL 101 (350)
Q Consensus 31 ~~lglfd~L~--~-~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~---~~~~t~~s~~l 101 (350)
.++.++..|. . .++++|..+||+.+++ +...+.+.++.|+..|+|.+..... +. .+.+|+.+..+
T Consensus 26 ~q~~vL~~l~~~~~~~~~~t~~eL~~~l~~---~~stvs~~i~~Le~kg~I~r~~~~~---D~R~~~i~lT~~G~~~ 96 (109)
T TIGR01889 26 EELLILYYLGKLENNEGKLTLKEIIKEILI---KQSALVKIIKKLSKKGYLSKERSED---DERKVIISINKEQRSK 96 (109)
T ss_pred HHHHHHHHHHhhhccCCcCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeccCCcc---cCCeEEEEECHHHHHH
Confidence 3444555554 1 1268999999999999 8899999999999999999875311 22 25566665533
|
This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047. |
| >PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2 | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.42 Score=35.12 Aligned_cols=81 Identities=16% Similarity=0.244 Sum_probs=52.0
Q ss_pred hhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhh--hHhhhcCCcccC-------CHHHHHH
Q 018775 253 ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDL--VMFAHTTGGKER-------TEQEWMK 323 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------s~~e~~~ 323 (350)
+|-|++.++..++|+++....+ +++++.= .. . ..++.+ .....++ +..+ .++++.+
T Consensus 4 vLIHYp~~d~~~~l~~La~~t~---~~~ifTf-AP-~---------T~~L~~m~~iG~lFP-~~dRsp~i~~~~e~~l~~ 68 (97)
T PF07109_consen 4 VLIHYPAEDAAQMLAHLASRTR---GSLIFTF-AP-R---------TPLLALMHAIGKLFP-RPDRSPRIYPHREEDLRR 68 (97)
T ss_pred eEeccCHHHHHHHHHHHHHhcc---CcEEEEE-CC-C---------CHHHHHHHHHhccCC-CCCCCCcEEEeCHHHHHH
Confidence 4557899999999999999866 6766521 11 1 112222 1222344 3333 6799999
Q ss_pred HHHhcCCceeEEEEcCCc--ee-EEEEe
Q 018775 324 LLEQGGFHRCKIISMPAL--YS-IIEAY 348 (350)
Q Consensus 324 ll~~aGf~~~~~~~~~~~--~~-vi~~~ 348 (350)
.++++||++.+...+... ++ ++|++
T Consensus 69 ~l~~~g~~~~r~~ris~gFY~S~llE~~ 96 (97)
T PF07109_consen 69 ALAAAGWRIGRTERISSGFYISQLLEAV 96 (97)
T ss_pred HHHhCCCeeeecccccCcChHHHHhhcc
Confidence 999999999998777432 22 55554
|
1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.86 Score=43.78 Aligned_cols=127 Identities=17% Similarity=0.302 Sum_probs=83.5
Q ss_pred hhhhhccCcchHHHHHHHHhhhhhhhHHHHHHhcccC-CCCcceEEEecCCchHHHHHHHHH----CCCCcEEEecc-hh
Q 018775 147 IWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDG-FDSIQSLADVGGGTGGALAEIVKS----YPHIKGINFDL-PH 220 (350)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~ 220 (350)
-|+.+++|+-.-..|.++. ...+.+..+.+ .+....|+-+|+|-|-+..+..+. ...++.++++- |.
T Consensus 334 TYetFEkD~VKY~~Yq~Ai-------~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPN 406 (649)
T KOG0822|consen 334 TYETFEKDPVKYDQYQQAI-------LKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPN 406 (649)
T ss_pred hhhhhhccchHHHHHHHHH-------HHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcc
Confidence 3566677776544444443 34455554422 123678889999999887765552 34566777776 77
Q ss_pred HhhhCCC------CCCeEEEeccCCC-CCC--CccEEEecchhccCChHH-HHHHHHHHHhhCCCCCceEEE
Q 018775 221 VVATAPV------CEGIFHVGGDMFD-AIP--KADAVFMKWILHDWDDEA-CVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 221 ~~~~a~~------~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~~~~~-~~~~L~~~~~~L~~pgG~lli 282 (350)
++-..+. .++|+++..|+.+ ..| .+|++++. .|--+.|++ ..+-|.-+.+.|+ |+|.-+=
T Consensus 407 AivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLk-pdgIsIP 476 (649)
T KOG0822|consen 407 AIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLK-PDGISIP 476 (649)
T ss_pred hhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcC-CCceEcc
Confidence 6655443 7899999999999 544 38988753 333444443 4467899999999 9976553
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.34 Score=41.01 Aligned_cols=99 Identities=18% Similarity=0.243 Sum_probs=54.3
Q ss_pred CcceEEEecCCchHHHHH---HHHHC-CCCcEEEecc--hhHhhhCCC----CCCeEEEeccCCCC-----C------CC
Q 018775 186 SIQSLADVGGGTGGALAE---IVKSY-PHIKGINFDL--PHVVATAPV----CEGIFHVGGDMFDA-----I------PK 244 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~---l~~~~-p~~~~~~~D~--~~~~~~a~~----~~~i~~~~~d~~~~-----~------p~ 244 (350)
++..|+++|--.|.-+.. +++.+ ++.+++++|+ +..-..+.+ ..||+++.||..++ . +.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 368999999877766654 44555 7889999998 222223333 48999999998863 1 11
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
..+|+. ..=|. .+.+.+.|+.....++ ||+.++|-|....
T Consensus 112 ~vlVil-Ds~H~--~~hvl~eL~~y~plv~-~G~Y~IVeDt~~~ 151 (206)
T PF04989_consen 112 PVLVIL-DSSHT--HEHVLAELEAYAPLVS-PGSYLIVEDTIIE 151 (206)
T ss_dssp SEEEEE-SS------SSHHHHHHHHHHT---TT-EEEETSHHHH
T ss_pred ceEEEE-CCCcc--HHHHHHHHHHhCccCC-CCCEEEEEecccc
Confidence 334443 22232 2236678999999999 9999888665543
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.22 Score=43.41 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=48.0
Q ss_pred HHHHhcccCCCCcc--eEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---------------CCCeEEEec
Q 018775 175 ALVSHYKDGFDSIQ--SLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---------------CEGIFHVGG 236 (350)
Q Consensus 175 ~~~~~~~~~~~~~~--~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~i~~~~~ 236 (350)
.+++... ++++. +|||.=+|.|..++.++.. +++++.++. |.+....+. ..|++++.+
T Consensus 77 ~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 77 AVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred HHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 3445554 55555 9999999999999999987 566888887 544332221 146777777
Q ss_pred cCCC---CCC-CccEEEe
Q 018775 237 DMFD---AIP-KADAVFM 250 (350)
Q Consensus 237 d~~~---~~p-~~D~i~~ 250 (350)
|..+ ..+ .||+|++
T Consensus 153 da~~~L~~~~~~fDVVYl 170 (250)
T PRK10742 153 SSLTALTDITPRPQVVYL 170 (250)
T ss_pred cHHHHHhhCCCCCcEEEE
Confidence 7665 122 3777765
|
|
| >TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.21 Score=36.83 Aligned_cols=44 Identities=11% Similarity=0.108 Sum_probs=38.3
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecC
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMT 95 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t 95 (350)
.++|..|||+.+|+ +...+.|.|+.|+..|+|.+.+. .+.|..+
T Consensus 46 ~~is~~eLa~~~g~---sr~tVsr~L~~Le~~GlI~r~~~-----~~~~~~n 89 (95)
T TIGR01610 46 DRVTATVIAELTGL---SRTHVSDAIKSLARRRIIFRQGM-----MGIVGVN 89 (95)
T ss_pred CccCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeecC-----CceeecC
Confidence 69999999999999 88999999999999999998763 3566655
|
This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.26 Score=44.32 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=40.8
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--------CCCeEEEec----cCCCCC--C--CccEE
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--------CEGIFHVGG----DMFDAI--P--KADAV 248 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~----d~~~~~--p--~~D~i 248 (350)
...++||||+|....=--|..+..++++++.|+ +..++.|++ .++|+++.. +++... + .||..
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred cceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 367999999997755333333334899999999 888887764 578988754 344422 1 39999
Q ss_pred Eecchhcc
Q 018775 249 FMKWILHD 256 (350)
Q Consensus 249 ~~~~vlh~ 256 (350)
+|+-=+|.
T Consensus 182 mCNPPFy~ 189 (299)
T PF05971_consen 182 MCNPPFYS 189 (299)
T ss_dssp EE-----S
T ss_pred ecCCcccc
Confidence 99877775
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.24 Score=35.90 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=49.4
Q ss_pred HHHhcChhhhhhhC-CCCCCHHHHHhhcCCCCCCcccHHHHH----------HHhhcCCce-eecccCCCCCCCeEecCh
Q 018775 29 SAVELRLADIMHSH-GSPITLPQLASRIDSSCPDIPYLARLM----------RMLVRKGIF-AVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 29 ~~~~lglfd~L~~~-~~~~t~~ela~~~~~~~~~~~~l~~~L----------~~L~~~g~l-~~~~~~~~~~~~~~~~t~ 96 (350)
.=++-.++..|... +.+.++.|||+.+++ ++.++..-| +.|+.+|++ .+....+ ...|++|+
T Consensus 8 S~~R~~vl~~L~~~yp~~~~~~eIar~v~~---~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~g---~k~Y~lT~ 81 (90)
T PF07381_consen 8 SKVRKKVLEYLCSIYPEPAYPSEIARSVGS---DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEKGG---FKYYRLTE 81 (90)
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHHCC---CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeecCC---eeEEEeCh
Confidence 44667788888765 478999999999999 788888777 569999999 3332110 24699998
Q ss_pred hchhh
Q 018775 97 ISKWL 101 (350)
Q Consensus 97 ~s~~l 101 (350)
.+..+
T Consensus 82 ~G~~~ 86 (90)
T PF07381_consen 82 KGKRI 86 (90)
T ss_pred hhhhH
Confidence 77643
|
The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.26 Score=44.36 Aligned_cols=103 Identities=16% Similarity=0.171 Sum_probs=70.9
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCC----CCC-ccEEEe
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDA----IPK-ADAVFM 250 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~----~p~-~D~i~~ 250 (350)
..++.+|||..++.|.=+..+++... ...++..|. +.-+...+. ...+.....|..+. .+. ||.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 56788999999999999999999876 567888887 655444332 45677777776652 223 898887
Q ss_pred ------cchhccCCh-------HH-------HHHHHHHHHhhC----CCCCceEEEEeeee
Q 018775 251 ------KWILHDWDD-------EA-------CVKILKNCRQAI----PDKSGKLVLVEIVV 287 (350)
Q Consensus 251 ------~~vlh~~~~-------~~-------~~~~L~~~~~~L----~~pgG~lli~e~~~ 287 (350)
..++..-++ ++ -.++|+++.+.+ + |||+++-.....
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k-~gG~lvYsTCS~ 222 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFK-PGGRLVYSTCSL 222 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBE-EEEEEEEEESHH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhccccc-CCCeEEEEeccH
Confidence 222332221 11 137899999999 9 999998655443
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.11 Score=29.72 Aligned_cols=31 Identities=23% Similarity=0.476 Sum_probs=26.0
Q ss_pred CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCce
Q 018775 45 PITLPQLASRIDSSCPDIPYLARLMRMLVRKGIF 78 (350)
Q Consensus 45 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l 78 (350)
|+|-+|||+.+|+ ..+-+.|.|..|...|++
T Consensus 2 ~mtr~diA~~lG~---t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL---TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC---cHHHHHHHHHHHHHcCCC
Confidence 5788999999999 889999999999999875
|
These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B .... |
| >PF14394 DUF4423: Domain of unknown function (DUF4423) | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.23 Score=40.97 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=41.2
Q ss_pred CCHHHHHhhc--CCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchh
Q 018775 46 ITLPQLASRI--DSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKW 100 (350)
Q Consensus 46 ~t~~ela~~~--~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~ 100 (350)
.++++||+++ ++ +..-++.-|+.|..+|++++++ +|+|..|..+-.
T Consensus 40 ~d~~~iak~l~p~i---s~~ev~~sL~~L~~~gli~k~~------~g~y~~t~~~l~ 87 (171)
T PF14394_consen 40 PDPEWIAKRLRPKI---SAEEVRDSLEFLEKLGLIKKDG------DGKYVQTDKSLT 87 (171)
T ss_pred CCHHHHHHHhcCCC---CHHHHHHHHHHHHHCCCeEECC------CCcEEEecceee
Confidence 3999999999 99 8899999999999999999998 679998876544
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.34 Score=43.06 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=67.1
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCC-cEEEecc-hhHhhhCCC----------CCCeEEEeccCCC---C--CCCcc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHI-KGINFDL-PHVVATAPV----------CEGIFHVGGDMFD---A--IPKAD 246 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~--~p~~D 246 (350)
..+...||=||+|-|.+....+++ +.+ .+..+|+ ..+++.-++ ..+|.++-||-+. . ..+||
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 457899999999999999988886 444 4567777 555554332 6789999998775 2 33599
Q ss_pred EEEecchhccCChH--HHHHHHHHHHhhCCCCCceEEEEe
Q 018775 247 AVFMKWILHDWDDE--ACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 247 ~i~~~~vlh~~~~~--~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
||+.-.-=-..+.. --..+..-+.++|| |+|.++...
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk-~dgv~~~q~ 236 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALK-GDGVVCTQG 236 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhC-CCcEEEEec
Confidence 99872210000000 01245667889999 999998865
|
|
| >PRK06474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.2 Score=41.69 Aligned_cols=73 Identities=18% Similarity=0.291 Sum_probs=53.6
Q ss_pred HHHHHHHHhcChhhhhhhCCCCCCHHHHHhhc-CCCCCCcccHHHHHHHhhcCCceeecccCC--CCCCCeEecChhch
Q 018775 24 SMALKSAVELRLADIMHSHGSPITLPQLASRI-DSSCPDIPYLARLMRMLVRKGIFAVHQSSD--GGDETLYKMTHISK 99 (350)
Q Consensus 24 ~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~--~~~~~~~~~t~~s~ 99 (350)
..+|.--.++.|++.|...+++.|+.+|++.+ ++ +...+.|.|+.|+..|+|.+..... ++....|+++...-
T Consensus 5 ~~~La~p~R~~Il~~L~~~~~~~ta~el~~~l~~i---s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~~ 80 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRNKEGLTPLELVKILKDV---PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEEDA 80 (178)
T ss_pred HHhhCCHHHHHHHHHHHhCCCCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEecccee
Confidence 45666677888899887653359999999999 67 7788999999999999999865311 11123577776543
|
|
| >PRK15431 ferrous iron transport protein FeoC; Provisional | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.24 Score=34.65 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=38.3
Q ss_pred hhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 36 ADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 36 fd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
=|.|... +-.++.+||..++. ++..++.+|..++++|-+++..
T Consensus 8 Rd~l~~~-gr~s~~~Ls~~~~~---p~~~VeaMLe~l~~kGkverv~ 50 (78)
T PRK15431 8 RDLLALR-GRMEAAQISQTLNT---PQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_pred HHHHHHc-CcccHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec
Confidence 3556665 79999999999999 8999999999999999999885
|
|
| >PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.28 Score=42.05 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=46.1
Q ss_pred hhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 36 ADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 36 fd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
...+.+. ..+|..+||+.+++ +...+.+.|+.|...|++++.... ....+++|+.+..+.
T Consensus 13 lg~l~~~-~~IS~~eLA~~L~i---S~~Tvsr~Lk~LEe~GlI~R~~~~---r~~~v~LTekG~~ll 72 (217)
T PRK14165 13 LGAVNNT-VKISSSEFANHTGT---SSKTAARILKQLEDEGYITRTIVP---RGQLITITEKGLDVL 72 (217)
T ss_pred HhccCCC-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEEcC---CceEEEECHHHHHHH
Confidence 3345442 57899999999999 889999999999999999987521 135688888776444
|
|
| >PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.28 Score=37.61 Aligned_cols=51 Identities=24% Similarity=0.443 Sum_probs=45.2
Q ss_pred HHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 28 KSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 28 ~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..++..|.+.+.++ |.+|+.+++..+|+ +-..++++++.|++.|-|...+
T Consensus 10 r~eLk~rIvElVRe~-GRiTi~ql~~~TGa---sR~Tvk~~lreLVa~G~l~~~G 60 (127)
T PF06163_consen 10 REELKARIVELVREH-GRITIKQLVAKTGA---SRNTVKRYLRELVARGDLYRHG 60 (127)
T ss_pred HHHHHHHHHHHHHHc-CCccHHHHHHHHCC---CHHHHHHHHHHHHHcCCeEeCC
Confidence 345667788888876 79999999999999 8899999999999999999987
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.82 Score=41.93 Aligned_cols=93 Identities=20% Similarity=0.199 Sum_probs=65.2
Q ss_pred CCCcceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEecc---CCCCCCC-ccEEEecchhccC
Q 018775 184 FDSIQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGD---MFDAIPK-ADAVFMKWILHDW 257 (350)
Q Consensus 184 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d---~~~~~p~-~D~i~~~~vlh~~ 257 (350)
..++.+|+=+|.| .|..+..++++.- .+++.+|. ++-.+.|++-..-.++... ..+..+. +|+|+..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 6778888888866 6788888999765 89999999 7777777763233333322 2222222 999887443 2
Q ss_pred ChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 258 DDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 258 ~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
..+....+.|+ +||+++++-...
T Consensus 240 ------~~~~~~l~~l~-~~G~~v~vG~~~ 262 (339)
T COG1064 240 ------ATLEPSLKALR-RGGTLVLVGLPG 262 (339)
T ss_pred ------hhHHHHHHHHh-cCCEEEEECCCC
Confidence 34677888899 999999987663
|
|
| >COG1497 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.22 Score=42.70 Aligned_cols=59 Identities=15% Similarity=0.378 Sum_probs=48.1
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch-hhh
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK-WLL 102 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~-~l~ 102 (350)
++-.|....+-+...|||+.+|+ .++.+...++-|...|++++.+ .+.|..|..+. ++.
T Consensus 15 IL~ei~~~qp~v~q~eIA~~lgi---T~QaVsehiK~Lv~eG~i~~~g------R~~Y~iTkkG~e~l~ 74 (260)
T COG1497 15 ILSEIAVRQPRVKQKEIAKKLGI---TLQAVSEHIKELVKEGLIEKEG------RGEYEITKKGAEWLL 74 (260)
T ss_pred HHHHHHHhCCCCCHHHHHHHcCC---CHHHHHHHHHHHHhccceeecC------CeeEEEehhHHHHHH
Confidence 33444333267899999999999 8899999999999999999987 57999999886 443
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.7 Score=39.56 Aligned_cols=93 Identities=24% Similarity=0.346 Sum_probs=64.3
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCC---------CcEEEecchhHhhhCCCCCCeEEEeccCCCC---------CC--
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPH---------IKGINFDLPHVVATAPVCEGIFHVGGDMFDA---------IP-- 243 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~---------~p-- 243 (350)
+.+..|++|+....|..+..|.++.-. -.++.+|+..|.- -+.|.-+++|+.++ +.
T Consensus 39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----I~GV~qlq~DIT~~stae~Ii~hfgge 114 (294)
T KOG1099|consen 39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----IEGVIQLQGDITSASTAEAIIEHFGGE 114 (294)
T ss_pred HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----cCceEEeecccCCHhHHHHHHHHhCCC
Confidence 567889999999999999988886411 1277788755433 24566778888873 12
Q ss_pred CccEEEec-----chhccCChH----HHHHHHHHHHhhCCCCCceEE
Q 018775 244 KADAVFMK-----WILHDWDDE----ACVKILKNCRQAIPDKSGKLV 281 (350)
Q Consensus 244 ~~D~i~~~-----~vlh~~~~~----~~~~~L~~~~~~L~~pgG~ll 281 (350)
.+|+|+|- --+|+++.- -....|.-...+|+ |||.++
T Consensus 115 kAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk-~Gg~FV 160 (294)
T KOG1099|consen 115 KADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLK-PGGSFV 160 (294)
T ss_pred CccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheec-CCCeee
Confidence 38999993 457776532 23344555667899 999986
|
|
| >COG3432 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.11 Score=37.90 Aligned_cols=53 Identities=19% Similarity=0.360 Sum_probs=43.0
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+++.+--|+-.+++ +-.....+++.|+..|++...+.. ....|.+|+.+.-+.
T Consensus 30 ~~~~~Tri~y~aNl---ny~~~~~yi~~L~~~Gli~~~~~~---~~~~y~lT~KG~~fl 82 (95)
T COG3432 30 GGIGITRIIYGANL---NYKRAQKYIEMLVEKGLIIKQDNG---RRKVYELTEKGKRFL 82 (95)
T ss_pred CCCCceeeeeecCc---CHHHHHHHHHHHHhCCCEEeccCC---ccceEEEChhHHHHH
Confidence 78999999999999 889999999999999977666520 012699999987554
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.86 Score=42.74 Aligned_cols=111 Identities=19% Similarity=0.217 Sum_probs=63.0
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHH----HHHHC---CCCcEEEecchh-----HhhhCC--------C-CCCeE
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAE----IVKSY---PHIKGINFDLPH-----VVATAP--------V-CEGIF 232 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~----l~~~~---p~~~~~~~D~~~-----~~~~a~--------~-~~~i~ 232 (350)
..|++.+. -....+|+|+|.|.|.-=.. |+.+- |.+++|+++.|. .++... . .-..+
T Consensus 100 qaIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fe 177 (374)
T PF03514_consen 100 QAILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFE 177 (374)
T ss_pred HHHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEE
Confidence 45677776 56788999999999954433 44432 677889998732 122111 1 22344
Q ss_pred EEec--cCCCCC--------C-CccEEEecchhccCChH------HHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 233 HVGG--DMFDAI--------P-KADAVFMKWILHDWDDE------ACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 233 ~~~~--d~~~~~--------p-~~D~i~~~~vlh~~~~~------~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
|... +-.++. + ++=+|-+...||++.++ ....+|+.++ .|+ |. .++++|...+.
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~-P~-vvv~~E~ea~~ 248 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLN-PK-VVVLVEQEADH 248 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcC-CC-EEEEEeecCCC
Confidence 4432 211111 1 13344466778988632 2445777666 567 76 55666665544
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.52 Score=42.12 Aligned_cols=68 Identities=21% Similarity=0.268 Sum_probs=57.0
Q ss_pred hhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCc-EEEecc-hhHhhhCCC-----CCCeEEEeccCCC
Q 018775 171 IVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIK-GINFDL-PHVVATAPV-----CEGIFHVGGDMFD 240 (350)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~ 240 (350)
.+....++.+. ..+....+|.-=|.|..+..+++++|... .+++|. |.+++.+++ .+|+++++.+|..
T Consensus 10 VLl~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 10 VLLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred hHHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 34566777777 67789999999999999999999998665 999999 999998875 5699999987765
|
|
| >TIGR00373 conserved hypothetical protein TIGR00373 | Back alignment and domain information |
|---|
Probab=91.50 E-value=0.22 Score=40.57 Aligned_cols=46 Identities=7% Similarity=0.035 Sum_probs=39.6
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
..|+++|... +++|-++||+.+|+ +..-++++|..|...|++....
T Consensus 17 v~Vl~aL~~~-~~~tdEeLa~~Lgi---~~~~VRk~L~~L~e~~Lv~~~r 62 (158)
T TIGR00373 17 GLVLFSLGIK-GEFTDEEISLELGI---KLNEVRKALYALYDAGLADYKR 62 (158)
T ss_pred HHHHHHHhcc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCceeee
Confidence 4577877754 69999999999999 8899999999999999996543
|
This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain. |
| >COG2512 Predicted membrane-associated trancriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.16 Score=44.78 Aligned_cols=49 Identities=20% Similarity=0.425 Sum_probs=43.6
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeeccc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQS 83 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 83 (350)
+..+.+.|.++||-++-+||.+++|+ ++..+.|.|+-|+..|++++.+.
T Consensus 197 e~~il~~i~~~GGri~Q~eL~r~lgl---sktTvsR~L~~LEk~GlIe~~K~ 245 (258)
T COG2512 197 EKEILDLIRERGGRITQAELRRALGL---SKTTVSRILRRLEKRGLIEKEKK 245 (258)
T ss_pred HHHHHHHHHHhCCEEeHHHHHHhhCC---ChHHHHHHHHHHHhCCceEEEEe
Confidence 35677888877778999999999999 88999999999999999999873
|
|
| >PHA02943 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.26 E-value=0.32 Score=38.56 Aligned_cols=44 Identities=9% Similarity=0.184 Sum_probs=38.8
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+++.|.. |+.|..|||+++|+ +...++-.|..|+..|.+.+..
T Consensus 15 eILE~Lk~--G~~TtseIAkaLGl---S~~qa~~~LyvLErEG~VkrV~ 58 (165)
T PHA02943 15 KTLRLLAD--GCKTTSRIANKLGV---SHSMARNALYQLAKEGMVLKVE 58 (165)
T ss_pred HHHHHHhc--CCccHHHHHHHHCC---CHHHHHHHHHHHHHcCceEEEe
Confidence 45667743 78999999999999 8889999999999999999986
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.92 E-value=0.11 Score=43.93 Aligned_cols=53 Identities=26% Similarity=0.374 Sum_probs=43.0
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD 240 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~ 240 (350)
....|+|.-||.|+-++.++.++|. ++.+|+ |.-+..|+. .+||+|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 5678999999999999999998875 556666 666665553 6799999999997
|
|
| >COG1378 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=90.91 E-value=0.39 Score=42.18 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=49.7
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
.|..++-.|-.. |+.|+.|||+.+|+ +...+..+|+.|...|+++..++. +..|+.-+-...+
T Consensus 17 yEa~vY~aLl~~-g~~tA~eis~~sgv---P~~kvY~vl~sLe~kG~v~~~~g~----P~~y~av~p~~~i 79 (247)
T COG1378 17 YEAKVYLALLCL-GEATAKEISEASGV---PRPKVYDVLRSLEKKGLVEVIEGR----PKKYRAVPPEELI 79 (247)
T ss_pred HHHHHHHHHHHh-CCccHHHHHHHcCC---CchhHHHHHHHHHHCCCEEeeCCC----CceEEeCCHHHHH
Confidence 445556666554 79999999999999 889999999999999999998532 5778876555433
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.78 E-value=1.3 Score=38.27 Aligned_cols=95 Identities=13% Similarity=0.161 Sum_probs=65.1
Q ss_pred CCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-----hhHhhhCCCCCCeEEEeccCCCCCC------CccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-----PHVVATAPVCEGIFHVGGDMFDAIP------KADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-----~~~~~~a~~~~~i~~~~~d~~~~~p------~~D~i~~~ 251 (350)
++++.+||-+|+++|....++..- .|+--+..++. .+.+..|++..+|--+.-|...|.. -.|+|+.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa- 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA- 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec-
Confidence 578999999999999998877653 45555555554 2455666665556666677777643 2677665
Q ss_pred chhccCChH-HHHHHHHHHHhhCCCCCceEEEEe
Q 018775 252 WILHDWDDE-ACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 252 ~vlh~~~~~-~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+.+.+ ++.-+.-++...|+ +||.++|.=
T Consensus 233 ----Dvaqpdq~RivaLNA~~FLk-~gGhfvisi 261 (317)
T KOG1596|consen 233 ----DVAQPDQARIVALNAQYFLK-NGGHFVISI 261 (317)
T ss_pred ----cCCCchhhhhhhhhhhhhhc-cCCeEEEEE
Confidence 44433 34445558999999 999998854
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=90.67 E-value=0.31 Score=38.58 Aligned_cols=104 Identities=17% Similarity=0.233 Sum_probs=64.5
Q ss_pred cEEEecc-hhHhhhCCC-------CCCeEEEeccCCC---CCC--CccEEEecchhccCC---------hHHHHHHHHHH
Q 018775 212 KGINFDL-PHVVATAPV-------CEGIFHVGGDMFD---AIP--KADAVFMKWILHDWD---------DEACVKILKNC 269 (350)
Q Consensus 212 ~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~---~~p--~~D~i~~~~vlh~~~---------~~~~~~~L~~~ 269 (350)
++.++|+ +++++..++ .+|++++..+-.. -.+ +.|+++++. -++| .+.....|+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 4678999 788776654 4689998765554 233 488887742 2232 33456789999
Q ss_pred HhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 270 RQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 270 ~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
.+.|+ |||.+.|+-..-.+.+.. ......+|.+-|.+.-|.+.+...+
T Consensus 79 l~lL~-~gG~i~iv~Y~GH~gG~e--------------------E~~av~~~~~~L~~~~~~V~~~~~~ 126 (140)
T PF06962_consen 79 LELLK-PGGIITIVVYPGHPGGKE--------------------ESEAVEEFLASLDQKEFNVLKYQFI 126 (140)
T ss_dssp HHHEE-EEEEEEEEE--STCHHHH--------------------HHHHHHHHHHTS-TTTEEEEEEEES
T ss_pred HHhhc-cCCEEEEEEeCCCCCCHH--------------------HHHHHHHHHHhCCcceEEEEEEEcc
Confidence 99999 999999866544332110 0112466666667778888888776
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.4 Score=44.89 Aligned_cols=61 Identities=8% Similarity=0.054 Sum_probs=52.7
Q ss_pred CCCeEEEeccCCC---CCC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 228 CEGIFHVGGDMFD---AIP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 228 ~~~i~~~~~d~~~---~~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
.++|+++.+++.+ ..| ++|.+++...+..+++++..+.++++.+.++ |||+++.-....+.
T Consensus 274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~-pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTAR-PGARVLWRSAAVPP 339 (380)
T ss_pred CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhC-CCCEEEEeeCCCCC
Confidence 5899999998887 233 4999999999999999999999999999999 99999986655544
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.36 Score=33.67 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=44.1
Q ss_pred HHHHHHhcChh-----hhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecC
Q 018775 26 ALKSAVELRLA-----DIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMT 95 (350)
Q Consensus 26 ~l~~~~~lglf-----d~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t 95 (350)
++..+-+.|.. ..+. -++|.++||..+|+ +...+.+.|+.|...|++...+ +.+...
T Consensus 7 Ll~l~~~~~~~~~~~~~~~~---~~lt~~~iA~~~g~---sr~tv~r~l~~l~~~g~I~~~~-------~~i~I~ 68 (76)
T PF13545_consen 7 LLELAERFGRRQDGDGIRIP---LPLTQEEIADMLGV---SRETVSRILKRLKDEGIIEVKR-------GKIIIL 68 (76)
T ss_dssp HHHHHHHHEEEEETTEEEEE---EESSHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET-------TEEEES
T ss_pred HHHHHHHHCCCCCCCCceEE---ecCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEcC-------CEEEEC
Confidence 44555555553 1233 58999999999999 8899999999999999999886 566554
|
... |
| >PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress | Back alignment and domain information |
|---|
Probab=90.24 E-value=0.43 Score=33.46 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=39.2
Q ss_pred CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeec-ccCCCCCCCeEecChhc
Q 018775 43 GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVH-QSSDGGDETLYKMTHIS 98 (350)
Q Consensus 43 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~-~~~~~~~~~~~~~t~~s 98 (350)
+.|+...+||+.+++ ++.-++.-+..|.++|+|+.. ++ .+.|.-|..+
T Consensus 21 ~~PVgSk~ia~~l~~---s~aTIRN~M~~Le~lGlve~~p~~-----s~GriPT~~a 69 (78)
T PF03444_consen 21 GEPVGSKTIAEELGR---SPATIRNEMADLEELGLVESQPHP-----SGGRIPTDKA 69 (78)
T ss_pred CCCcCHHHHHHHHCC---ChHHHHHHHHHHHHCCCccCCCCC-----CCCCCcCHHH
Confidence 379999999999999 789999999999999999864 32 3566666544
|
Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent |
| >PRK10870 transcriptional repressor MprA; Provisional | Back alignment and domain information |
|---|
Probab=90.09 E-value=0.54 Score=39.02 Aligned_cols=67 Identities=15% Similarity=0.170 Sum_probs=48.0
Q ss_pred cChhhhhhhC-CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 33 LRLADIMHSH-GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 33 lglfd~L~~~-~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+.++-.|... ++++|..+||+.+++ +...+.++++-|+..|+|++.....+.-.-..++|+.+..+.
T Consensus 58 ~~iL~~L~~~~~~~it~~eLa~~l~l---~~~tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~~~ 125 (176)
T PRK10870 58 FMALITLESQENHSIQPSELSCALGS---SRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFL 125 (176)
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 4455556432 257899999999999 889999999999999999998632110012466777776554
|
|
| >COG1733 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=89.92 E-value=1.3 Score=34.26 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcC-CCCCCcccHHHHHHHhhcCCceeecccCCCC
Q 018775 9 RGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRID-SSCPDIPYLARLMRMLVRKGIFAVHQSSDGG 87 (350)
Q Consensus 9 ~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~-~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~ 87 (350)
-+....++.+.+-|...+|....+ |+.-..||.+.++ + ++.-|.+-|+.|+..|++.+..-....
T Consensus 11 c~~~~~l~~ig~kW~~lIl~~L~~-----------g~~RF~eL~r~i~~I---s~k~Ls~~Lk~Le~~Glv~R~~~~~~P 76 (120)
T COG1733 11 CPVEEALEVIGGKWTLLILRDLFD-----------GPKRFNELRRSIGGI---SPKMLSRRLKELEEDGLVERVVYPEEP 76 (120)
T ss_pred CCHHHHHHHHcCccHHHHHHHHhc-----------CCCcHHHHHHHcccc---CHHHHHHHHHHHHHCCCEEeeecCCCC
Confidence 356777777778777777765432 5889999999998 8 889999999999999999998632111
Q ss_pred CCCeEecChhchhhh
Q 018775 88 DETLYKMTHISKWLL 102 (350)
Q Consensus 88 ~~~~~~~t~~s~~l~ 102 (350)
+.-.|++|+.+.-+.
T Consensus 77 prveY~LT~~G~~L~ 91 (120)
T COG1733 77 PRVEYRLTEKGRDLL 91 (120)
T ss_pred ceeEEEEhhhHHHHH
Confidence 134688888776554
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=89.87 E-value=0.43 Score=37.11 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=40.8
Q ss_pred HHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcCCce
Q 018775 263 VKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALY 342 (350)
Q Consensus 263 ~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~~~ 342 (350)
..+++++++.++ |||++.-. + +...+++.|.++||.+.++...++-.
T Consensus 70 ~e~~~~l~~~~~-~~~~l~Ty--------------------------s------~a~~Vr~~L~~aGF~v~~~~g~g~Kr 116 (124)
T PF05430_consen 70 EELFKKLARLSK-PGGTLATY--------------------------S------SAGAVRRALQQAGFEVEKVPGFGRKR 116 (124)
T ss_dssp HHHHHHHHHHEE-EEEEEEES----------------------------------BHHHHHHHHHCTEEEEEEE-STTSS
T ss_pred HHHHHHHHHHhC-CCcEEEEe--------------------------e------chHHHHHHHHHcCCEEEEcCCCCCcc
Confidence 368999999999 99887620 1 12457788999999988877777777
Q ss_pred eEEEEee
Q 018775 343 SIIEAYP 349 (350)
Q Consensus 343 ~vi~~~~ 349 (350)
.++.|.|
T Consensus 117 ~~~~a~~ 123 (124)
T PF05430_consen 117 EMLRAVK 123 (124)
T ss_dssp EEEEEEC
T ss_pred hheEEEc
Confidence 8888776
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >PRK13777 transcriptional regulator Hpr; Provisional | Back alignment and domain information |
|---|
Probab=89.83 E-value=0.65 Score=38.82 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=48.2
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+.++..|... +++|..+||+.+++ +...+.++++-|+..|+|.+.....+.-.-...+|+.+..+.
T Consensus 48 ~~iL~~L~~~-~~itq~eLa~~l~l---~~sTvtr~l~rLE~kGlI~R~~~~~DrR~~~I~LTekG~~l~ 113 (185)
T PRK13777 48 HHILWIAYHL-KGASISEIAKFGVM---HVSTAFNFSKKLEERGYLTFSKKEDDKRNTYIELTEKGEELL 113 (185)
T ss_pred HHHHHHHHhC-CCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 4566777665 68999999999999 778899999999999999987421110011356777666444
|
|
| >PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function | Back alignment and domain information |
|---|
Probab=89.82 E-value=0.44 Score=34.77 Aligned_cols=47 Identities=13% Similarity=0.254 Sum_probs=41.4
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+.|+..|... +|=.+.-||..+++ +...++..|+.|..+|+|++.+
T Consensus 9 ~~~IL~hl~~~-~~Dy~k~ia~~l~~---~~~~v~~~l~~Le~~GLler~~ 55 (92)
T PF10007_consen 9 DLKILQHLKKA-GPDYAKSIARRLKI---PLEEVREALEKLEEMGLLERVE 55 (92)
T ss_pred HHHHHHHHHHH-CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEec
Confidence 45667777765 68899999999999 8999999999999999999997
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=89.79 E-value=0.54 Score=47.77 Aligned_cols=96 Identities=20% Similarity=0.206 Sum_probs=59.6
Q ss_pred CCcceEEEecCCchHHHHHHHHHC-------C-----CCcEEEecc-h---hHhhhCC----------------------
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSY-------P-----HIKGINFDL-P---HVVATAP---------------------- 226 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~~~~a~---------------------- 226 (350)
+..-+|+|+|=|+|.......+.+ | .++++.++. | +.+..+.
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 345899999999998766655433 3 357777774 3 1111110
Q ss_pred C-------CC--CeEEEeccCCCC---CC-CccEEEec-chhccCChHHHHHHHHHHHhhCCCCCceEE
Q 018775 227 V-------CE--GIFHVGGDMFDA---IP-KADAVFMK-WILHDWDDEACVKILKNCRQAIPDKSGKLV 281 (350)
Q Consensus 227 ~-------~~--~i~~~~~d~~~~---~p-~~D~i~~~-~vlh~~~~~~~~~~L~~~~~~L~~pgG~ll 281 (350)
. .. ++++..||+.+- +. .+|++++- +.-..-|+--...+++++++.++ |||++.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~-~~~~~~ 203 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLAR-PGATLA 203 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhC-CCCEEE
Confidence 0 12 344566887762 22 38998873 33322233334578999999999 999887
|
|
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=89.54 E-value=0.37 Score=46.97 Aligned_cols=65 Identities=22% Similarity=0.262 Sum_probs=52.2
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhhc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLH 103 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~~ 103 (350)
.+..++..|... +++|..+||+.+++ +...+.+.++.|.+.|++.+.... ...|.+|+.++.+..
T Consensus 7 ~e~~vL~~L~~~-~~~s~~eLA~~l~l---~~~tVt~~i~~Le~kGlV~~~~~~----~~~i~LTeeG~~~~~ 71 (489)
T PRK04172 7 NEKKVLKALKEL-KEATLEELAEKLGL---PPEAVMRAAEWLEEKGLVKVEERV----EEVYVLTEEGKKYAE 71 (489)
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCCEEEEeee----EEEEEECHHHHHHHH
Confidence 445566677654 68999999999999 889999999999999999987521 246999999984443
|
|
| >PRK13509 transcriptional repressor UlaR; Provisional | Back alignment and domain information |
|---|
Probab=89.29 E-value=0.47 Score=41.88 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=40.9
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
..+.+.|.+. +.++++|||+.+|+ ++.-++|-|+.|.+.|++.+..
T Consensus 8 ~~Il~~l~~~-~~~~~~ela~~l~v---S~~TirRdL~~Le~~g~i~r~~ 53 (251)
T PRK13509 8 QILLELLAQL-GFVTVEKVIERLGI---SPATARRDINKLDESGKLKKVR 53 (251)
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 3467778775 79999999999999 8899999999999999999986
|
|
| >PRK11179 DNA-binding transcriptional regulator AsnC; Provisional | Back alignment and domain information |
|---|
Probab=89.14 E-value=0.46 Score=38.43 Aligned_cols=48 Identities=8% Similarity=0.159 Sum_probs=42.9
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..|++.|..+ +..|..+||+.+|+ ++..+.+=++.|...|++....
T Consensus 10 ~D~~Il~~Lq~d-~R~s~~eiA~~lgl---S~~tV~~Ri~rL~~~GvI~~~~ 57 (153)
T PRK11179 10 LDRGILEALMEN-ARTPYAELAKQFGV---SPGTIHVRVEKMKQAGIITGTR 57 (153)
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeEE
Confidence 567888999886 79999999999999 8899999999999999998653
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=89.12 E-value=1.2 Score=39.94 Aligned_cols=123 Identities=15% Similarity=0.060 Sum_probs=71.6
Q ss_pred eEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-C----CCCccEEEecchhccCCh---
Q 018775 189 SLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-A----IPKADAVFMKWILHDWDD--- 259 (350)
Q Consensus 189 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~----~p~~D~i~~~~vlh~~~~--- 259 (350)
+++|+-||.|.+...+.+..- -.+..+|. +.+++..+....-.+..+|+.+ . .+++|+++...-...++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~-~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~ag~ 80 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGF-EIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIAGK 80 (275)
T ss_pred cEEEEccCcchHHHHHHHcCC-EEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhhHHhh
Confidence 689999999999988887642 13466787 6666655431111256677776 2 345999998654443321
Q ss_pred -----HHHHHHHHHHH---hhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 260 -----EACVKILKNCR---QAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 260 -----~~~~~~L~~~~---~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
+....++.++. +.++ | +++++|.+..-.. . .......+|.+.|++.||.
T Consensus 81 ~~~~~d~r~~L~~~~~~~i~~~~-P--~~~v~ENV~g~~~------------------~--~~~~~~~~i~~~l~~~GY~ 137 (275)
T cd00315 81 RKGFEDTRGTLFFEIIRILKEKK-P--KYFLLENVKGLLT------------------H--DNGNTLKVILNTLEELGYN 137 (275)
T ss_pred cCCCCCchHHHHHHHHHHHHhcC-C--CEEEEEcCcchhc------------------c--CchHHHHHHHHHHHhCCcE
Confidence 11122333333 3334 4 5666675542211 0 1122467888999999998
Q ss_pred eeEE
Q 018775 332 RCKI 335 (350)
Q Consensus 332 ~~~~ 335 (350)
+...
T Consensus 138 ~~~~ 141 (275)
T cd00315 138 VYWK 141 (275)
T ss_pred EEEE
Confidence 6443
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PRK11169 leucine-responsive transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=89.07 E-value=0.46 Score=38.95 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=43.2
Q ss_pred HHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeec
Q 018775 30 AVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVH 81 (350)
Q Consensus 30 ~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 81 (350)
-.+..|+..|.++ +.+|..+||+++|+ ++..+.+=++.|...|++...
T Consensus 14 ~~D~~IL~~Lq~d-~R~s~~eiA~~lgl---S~~tv~~Ri~rL~~~GvI~~~ 61 (164)
T PRK11169 14 RIDRNILNELQKD-GRISNVELSKRVGL---SPTPCLERVRRLERQGFIQGY 61 (164)
T ss_pred HHHHHHHHHhccC-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEE
Confidence 3678889999876 79999999999999 889999999999999999864
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=88.96 E-value=3.6 Score=38.72 Aligned_cols=99 Identities=20% Similarity=0.208 Sum_probs=62.2
Q ss_pred CCCcceEEEecCCc-hHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEe---cc-CCC---CC---CCccEEEec
Q 018775 184 FDSIQSLADVGGGT-GGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVG---GD-MFD---AI---PKADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~---~d-~~~---~~---p~~D~i~~~ 251 (350)
..++.+||.+|||. |..+..+++.....++++++. ++..+.+++...+.++. .+ +.+ .. ..+|+++-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 55678999999997 889999999875435777776 66666665421122221 11 111 11 137887663
Q ss_pred c---------------hhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 252 W---------------ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 252 ~---------------vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
- +|+-.++. ...++++.+.++ |+|++++...
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~-~~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVR-KGGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhc-cCCEEEEEcC
Confidence 2 11111222 356889999999 9999998754
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >COG1846 MarR Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=88.87 E-value=0.69 Score=35.28 Aligned_cols=71 Identities=21% Similarity=0.303 Sum_probs=50.5
Q ss_pred HHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 28 KSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 28 ~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
-+..++.++..|... ++.+..+||+.+++ +...+.++++.|+..|++.+.....+.-.-.+.+|+.+..+.
T Consensus 20 lt~~q~~~L~~l~~~-~~~~~~~la~~l~i---~~~~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~ 90 (126)
T COG1846 20 LTPPQYQVLLALYEA-GGITVKELAERLGL---DRSTVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELL 90 (126)
T ss_pred CCHHHHHHHHHHHHh-CCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeecCCccccceeeEEECccHHHHH
Confidence 344566677777764 35544999999999 889999999999999999998632110012467777666444
|
|
| >COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.67 E-value=0.54 Score=39.78 Aligned_cols=45 Identities=18% Similarity=0.278 Sum_probs=36.9
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
|.+.+...+.+.|.+|+|+.+|+ +.--.||.|.+|++.|+++.+-
T Consensus 163 i~~~~~~~~~~~Taeela~~~gi---SRvTaRRYLeyl~~~~~l~a~i 207 (224)
T COG4565 163 VREALKEPDQELTAEELAQALGI---SRVTARRYLEYLVSNGILEAEI 207 (224)
T ss_pred HHHHHhCcCCccCHHHHHHHhCc---cHHHHHHHHHHHHhcCeeeEEe
Confidence 33444422279999999999999 8889999999999999999764
|
|
| >PRK10906 DNA-binding transcriptional repressor GlpR; Provisional | Back alignment and domain information |
|---|
Probab=88.65 E-value=0.45 Score=42.03 Aligned_cols=47 Identities=9% Similarity=0.159 Sum_probs=41.4
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
...+.+.|.+. +.+++.|||+.+++ ++.-++|-|..|...|++.+..
T Consensus 7 ~~~Il~~l~~~-~~~~~~ela~~l~v---S~~TiRRdL~~Le~~g~l~r~~ 53 (252)
T PRK10906 7 HDAIIELVKQQ-GYVSTEELVEHFSV---SPQTIRRDLNDLAEQNKILRHH 53 (252)
T ss_pred HHHHHHHHHHc-CCEeHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 34567778775 68999999999999 8899999999999999999986
|
|
| >PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=88.54 E-value=1.1 Score=30.12 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=31.9
Q ss_pred CCC-CHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPI-TLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
..+ |..+||+.+|+ +..-+++-|+.|.+.|++....
T Consensus 22 ~~lps~~~la~~~~v---sr~tvr~al~~L~~~g~i~~~~ 58 (64)
T PF00392_consen 22 DRLPSERELAERYGV---SRTTVREALRRLEAEGLIERRP 58 (64)
T ss_dssp SBE--HHHHHHHHTS----HHHHHHHHHHHHHTTSEEEET
T ss_pred CEeCCHHHHHHHhcc---CCcHHHHHHHHHHHCCcEEEEC
Confidence 577 99999999999 8899999999999999999886
|
The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A .... |
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
Probab=88.41 E-value=0.52 Score=45.24 Aligned_cols=69 Identities=13% Similarity=0.089 Sum_probs=56.4
Q ss_pred HHhcChhhhhhhCCCC-CCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch-hhhcCCC
Q 018775 30 AVELRLADIMHSHGSP-ITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK-WLLHDSE 106 (350)
Q Consensus 30 ~~~lglfd~L~~~~~~-~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~-~l~~~~~ 106 (350)
+.+..|+..|... ++ .+.++||+.+|+ +...+.+.+..|.+.|+++..... ...|.+|+.+. ++..+.|
T Consensus 3 ~~e~~iL~~l~~~-~~~~~~~~la~~~g~---~~~~v~~~~~~L~~kg~v~~~~~~----~~~~~LT~eG~~~l~~G~P 73 (492)
T PLN02853 3 MAEEALLGALSNN-EEISDSGQFAASHGL---DHNEVVGVIKSLHGFRYVDAQDIK----RETWVLTEEGKKYAAEGSP 73 (492)
T ss_pred hHHHHHHHHHHhc-CCCCCHHHHHHHcCC---CHHHHHHHHHHHHhCCCEEEEEEE----EEEEEECHHHHHHHHcCCH
Confidence 4567778888764 44 799999999999 889999999999999999877532 46899999998 6666655
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=88.07 E-value=2.6 Score=41.19 Aligned_cols=95 Identities=15% Similarity=0.148 Sum_probs=61.0
Q ss_pred CCcceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccC--------------CCC-------
Q 018775 185 DSIQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDM--------------FDA------- 241 (350)
Q Consensus 185 ~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~--------------~~~------- 241 (350)
.++.+|+=+||| .|..++..++... .+++++|. ++..+.++.. ..++..-|. .++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 468999999999 5667777777764 58999998 8877777651 112111111 001
Q ss_pred -----CCCccEEEecchhccCChHHHHHH-HHHHHhhCCCCCceEEEEee
Q 018775 242 -----IPKADAVFMKWILHDWDDEACVKI-LKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 242 -----~p~~D~i~~~~vlh~~~~~~~~~~-L~~~~~~L~~pgG~lli~e~ 285 (350)
...+|+++..--. +......+ .+++.+.++ |||+++.+-.
T Consensus 241 ~~~~~~~gaDVVIetag~---pg~~aP~lit~~~v~~mk-pGgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTALI---PGKPAPKLITAEMVASMK-PGSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCCC---CcccCcchHHHHHHHhcC-CCCEEEEEcc
Confidence 1348999875432 22112234 599999999 9999887643
|
|
| >COG1522 Lrp Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=88.05 E-value=0.58 Score=37.66 Aligned_cols=48 Identities=17% Similarity=0.318 Sum_probs=43.1
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..++..|..+ ++.|..+||+++|+ ++..+.+-++-|...|++....
T Consensus 9 ~D~~IL~~L~~d-~r~~~~eia~~lgl---S~~~v~~Ri~~L~~~GiI~~~~ 56 (154)
T COG1522 9 IDRRILRLLQED-ARISNAELAERVGL---SPSTVLRRIKRLEEEGVIKGYT 56 (154)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCceeeEE
Confidence 466788888876 79999999999999 8899999999999999999886
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.74 E-value=1.1 Score=39.41 Aligned_cols=202 Identities=12% Similarity=0.099 Sum_probs=106.1
Q ss_pred CHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhhcCCCCChHHHH----HHhcC-chh
Q 018775 47 TLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLHDSELSLAPMI----LVENN-QWL 121 (350)
Q Consensus 47 t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~~~~~~~~~~~~----~~~~~-~~~ 121 (350)
+.-.|+....+ +-+.+..+++.|...|++..++ +...+|+.+..++..- .+...- ..+.. ...
T Consensus 36 d~wkIvd~s~~---plp~v~~i~~~l~~egiv~~~~-------g~v~~TekG~E~~e~~--gi~~~~~~~C~~CeGrgi~ 103 (354)
T COG1568 36 DFWKIVDYSDL---PLPLVASILEILEDEGIVKIEE-------GGVELTEKGEELAEEL--GIKKKYDYTCECCEGRGIS 103 (354)
T ss_pred chHhhhhhccC---CchHHHHHHHHHHhcCcEEEec-------CcEeehhhhHHHHHHh--CCCccccccccCcCCcccc
Confidence 78888888888 8899999999999999999997 5589999998776422 111100 00000 000
Q ss_pred hhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHHHHhhhhhhh--HHHHHHhcccCCCCcceEEEecCCchH
Q 018775 122 LEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIV--MKALVSHYKDGFDSIQSLADVGGGTGG 199 (350)
Q Consensus 122 ~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~--~~~~~~~~~~~~~~~~~vLDvG~G~G~ 199 (350)
...+..|-+.++. +....|.....|.+....-.... +.-+-+.- --.+..|+-+| ---.
T Consensus 104 l~~f~dll~kf~e---------------iaK~RP~p~~~yDQgfvTpEttv~Rv~lm~~RG---DL~gK~I~vvG-DDDL 164 (354)
T COG1568 104 LQAFKDLLEKFRE---------------IAKDRPEPLHQYDQGFVTPETTVSRVALMYSRG---DLEGKEIFVVG-DDDL 164 (354)
T ss_pred chhHHHHHHHHHH---------------HHhcCCCcchhcccccccccceeeeeeeecccc---CcCCCeEEEEc-Cchh
Confidence 0012222221111 11111111111111110000000 00000011 12467899898 5555
Q ss_pred HHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCCC-----ccEEEecchhccCChHHHHHHHH
Q 018775 200 ALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIPK-----ADAVFMKWILHDWDDEACVKILK 267 (350)
Q Consensus 200 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p~-----~D~i~~~~vlh~~~~~~~~~~L~ 267 (350)
++++++-..---++.++|+ +..++...+ .++++.+..|..+|+|+ ||+++.--.= .-+....+|.
T Consensus 165 tsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPpe---Ti~alk~Flg 241 (354)
T COG1568 165 TSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPPE---TIKALKLFLG 241 (354)
T ss_pred hHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCchh---hHHHHHHHHh
Confidence 6666554432336778888 544443322 56799999999999883 9999862100 0122445666
Q ss_pred HHHhhCCCCC--ceEEE
Q 018775 268 NCRQAIPDKS--GKLVL 282 (350)
Q Consensus 268 ~~~~~L~~pg--G~lli 282 (350)
+=...|+++| |.+.+
T Consensus 242 RGI~tLkg~~~aGyfgi 258 (354)
T COG1568 242 RGIATLKGEGCAGYFGI 258 (354)
T ss_pred ccHHHhcCCCccceEee
Confidence 6677787333 44443
|
|
| >PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle | Back alignment and domain information |
|---|
Probab=87.71 E-value=0.22 Score=34.54 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=35.8
Q ss_pred hhhhhhhCCCCCCHHHHHhhc---CCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 35 LADIMHSHGSPITLPQLASRI---DSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~---~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+|...+. +.+++.++|+.+ +... ..+++..+++.|++.|++++..
T Consensus 16 ~~~~~~~--~~i~l~~ia~~l~~~~~k~-~~RRlYDI~NVLealgli~K~~ 63 (71)
T PF02319_consen 16 LFESSPD--KSISLNEIADKLISENVKT-QRRRLYDIINVLEALGLIEKQS 63 (71)
T ss_dssp HHHHCCC--TEEEHHHHHHHCHHHCCHH-HCHHHHHHHHHHHHCTSEEEEE
T ss_pred HHHHCCC--CcccHHHHHHHHccccccc-ccchhhHHHHHHHHhCceeecC
Confidence 3444444 689999999999 7611 4589999999999999999975
|
Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B. |
| >PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species | Back alignment and domain information |
|---|
Probab=87.44 E-value=0.94 Score=35.74 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=34.8
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeeccc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQS 83 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 83 (350)
|++|.+|||...|+ ..+.+-.-|-++++.|-|.+..-
T Consensus 5 Ga~T~eELA~~FGv---ttRkvaStLa~~ta~Grl~Rv~q 41 (155)
T PF07789_consen 5 GAKTAEELAGKFGV---TTRKVASTLAMVTATGRLIRVNQ 41 (155)
T ss_pred CcccHHHHHHHhCc---chhhhHHHHHHHHhcceeEEecC
Confidence 79999999999999 88999999999999999999863
|
The region in question is approximately 150 amino acid residues long. |
| >PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=87.39 E-value=0.79 Score=43.65 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=38.5
Q ss_pred CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecC
Q 018775 43 GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMT 95 (350)
Q Consensus 43 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t 95 (350)
+.|.|.++|++++++ +++.++++|+.|...|++.+.+ ++.|...
T Consensus 308 g~~~t~~~La~~l~~---~~~~v~~iL~~L~~agLI~~~~------~g~~~l~ 351 (412)
T PRK04214 308 GKALDVDEIRRLEPM---GYDELGELLCELARIGLLRRGE------RGQWVLA 351 (412)
T ss_pred CCCCCHHHHHHHhCC---CHHHHHHHHHHHHhCCCeEecC------CCceEec
Confidence 379999999999999 8899999999999999999765 4667644
|
|
| >TIGR02147 Fsuc_second hypothetical protein, TIGR02147 | Back alignment and domain information |
|---|
Probab=87.22 E-value=0.97 Score=40.26 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=40.1
Q ss_pred CCCCHHHHHhhcC--CCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 44 SPITLPQLASRID--SSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 44 ~~~t~~ela~~~~--~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
+..++++||++++ + +..-++.-|+.|..+|++++++ +|.|..|..+-
T Consensus 136 ~~~~~~~ia~~l~p~i---s~~ev~~sL~~L~~~glikk~~------~g~y~~t~~~l 184 (271)
T TIGR02147 136 FADDPEELAKRCFPKI---SAEQVKESLDLLERLGLIKKNE------DGFYKQTDKAV 184 (271)
T ss_pred CCCCHHHHHHHhCCCC---CHHHHHHHHHHHHHCCCeeECC------CCcEEeeccee
Confidence 3448999999998 6 7888999999999999999998 68898887653
|
This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized. |
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.13 E-value=0.68 Score=43.41 Aligned_cols=89 Identities=15% Similarity=0.067 Sum_probs=56.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-C-CCC--ccEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-A-IPK--ADAVFMKW 252 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~-~p~--~D~i~~~~ 252 (350)
.+...|||||.|||.++.-.+++..+ .++.++. -.|.+.|++ +++|+++..--.+ . .|. +|+++..-
T Consensus 65 ~gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~ 143 (636)
T KOG1501|consen 65 IGKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVRED 143 (636)
T ss_pred CceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhh
Confidence 35678999999999999888888755 4777776 677776654 6788887654443 2 222 77666544
Q ss_pred hhccCChHHHHHHHHHHHhhCC
Q 018775 253 ILHDWDDEACVKILKNCRQAIP 274 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~~L~ 274 (350)
+.-.+--+-+..-++++.+.|-
T Consensus 144 fdtEligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 144 FDTELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhhhhccccchhHHHHHHHhc
Confidence 4333322323345666666553
|
|
| >PF13730 HTH_36: Helix-turn-helix domain | Back alignment and domain information |
|---|
Probab=86.92 E-value=0.59 Score=30.33 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=27.5
Q ss_pred CHHHHHhhcCCCCCCcccHHHHHHHhhcCCce
Q 018775 47 TLPQLASRIDSSCPDIPYLARLMRMLVRKGIF 78 (350)
Q Consensus 47 t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l 78 (350)
|.+.||+.+|+ +.+.+.+.++.|+..|++
T Consensus 27 S~~~la~~~g~---s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDLGV---SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHHCc---CHHHHHHHHHHHHHCcCC
Confidence 89999999999 889999999999999986
|
|
| >TIGR00498 lexA SOS regulatory protein LexA | Back alignment and domain information |
|---|
Probab=86.64 E-value=0.88 Score=38.51 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=33.3
Q ss_pred CCCCHHHHHhhcCCCCCC-cccHHHHHHHhhcCCceeecc
Q 018775 44 SPITLPQLASRIDSSCPD-IPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~-~~~l~~~L~~L~~~g~l~~~~ 82 (350)
-+.|..|||+.+|+ + ...+.+.|+.|...|++.++.
T Consensus 24 ~~~~~~ela~~~~~---~s~~tv~~~l~~L~~~g~i~~~~ 60 (199)
T TIGR00498 24 YPPSIREIARAVGL---RSPSAAEEHLKALERKGYIERDP 60 (199)
T ss_pred CCCcHHHHHHHhCC---CChHHHHHHHHHHHHCCCEecCC
Confidence 56889999999999 6 889999999999999999986
|
LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA. |
| >PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus | Back alignment and domain information |
|---|
Probab=86.63 E-value=1.1 Score=30.79 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=38.4
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+...|+. +..|.+||-+.+|+ +...+-..|..|...|++.+.-
T Consensus 9 ~IL~~ls~--~c~TLeeL~ekTgi---~k~~LlV~LsrL~k~GiI~Rkw 52 (72)
T PF05584_consen 9 KILIILSK--RCCTLEELEEKTGI---SKNTLLVYLSRLAKRGIIERKW 52 (72)
T ss_pred HHHHHHHh--ccCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeeee
Confidence 35556666 69999999999999 8899999999999999999874
|
|
| >PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks | Back alignment and domain information |
|---|
Probab=86.53 E-value=0.72 Score=32.32 Aligned_cols=49 Identities=16% Similarity=0.231 Sum_probs=41.7
Q ss_pred HhcChhhhhhhCC-CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHG-SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..+++.+..+. .+++..+|++.+|. +++.+-..++.|...|++.+..
T Consensus 3 ~~~~~Le~I~rsR~~Gi~q~~L~~~~~~---D~r~i~~~~k~L~~~gLI~k~~ 52 (75)
T PF04182_consen 3 IQYCLLERIARSRYNGITQSDLSKLLGI---DPRSIFYRLKKLEKKGLIVKQS 52 (75)
T ss_pred hHHHHHHHHHhcCCCCEehhHHHHHhCC---CchHHHHHHHHHHHCCCEEEEE
Confidence 4455667776533 78899999999999 9999999999999999999986
|
This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms. |
| >PRK09802 DNA-binding transcriptional regulator AgaR; Provisional | Back alignment and domain information |
|---|
Probab=86.51 E-value=0.8 Score=40.85 Aligned_cols=47 Identities=9% Similarity=0.152 Sum_probs=42.0
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
...+.+.|... +.+++.|||+.+++ ++.-++|=|..|...|++.+..
T Consensus 19 ~~~Il~~L~~~-~~vtv~eLa~~l~V---S~~TIRRDL~~Le~~G~l~r~~ 65 (269)
T PRK09802 19 REQIIQRLRQQ-GSVQVNDLSALYGV---STVTIRNDLAFLEKQGIAVRAY 65 (269)
T ss_pred HHHHHHHHHHc-CCEeHHHHHHHHCC---CHHHHHHHHHHHHhCCCeEEEe
Confidence 45577888775 68999999999999 8899999999999999999987
|
|
| >PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional | Back alignment and domain information |
|---|
Probab=86.37 E-value=0.91 Score=43.77 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=55.5
Q ss_pred HHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch-hhhcCCC
Q 018775 30 AVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK-WLLHDSE 106 (350)
Q Consensus 30 ~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~-~l~~~~~ 106 (350)
..+..|+..|....+..+.++||+.+|+ +...+.+.+..|.+.|+++.+... ...|.+|+.+. ++..+.|
T Consensus 6 ~~e~~iL~~l~~~~~~~~~~~la~~~~~---~~~~v~~~~~~L~~kg~v~~~~~~----~~~~~LT~eG~~~~~~G~P 76 (494)
T PTZ00326 6 LEENTILSKLESENEIVNSLALAESLNI---DHQKVVGAIKSLESANYITTEMKK----SNTWTLTEEGEDYLKNGSP 76 (494)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHcCC---CHHHHHHHHHHHHhCCCEEEEEEE----EEEEEECHHHHHHHHcCCH
Confidence 3455667777652257899999999999 889999999999999999887632 46899999998 6666555
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.32 E-value=0.72 Score=40.84 Aligned_cols=95 Identities=12% Similarity=-0.022 Sum_probs=53.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------------CCCeEEEec---cCCC-CCC
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------------CEGIFHVGG---DMFD-AIP 243 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~~i~~~~~---d~~~-~~p 243 (350)
-.+.+|||+|||+|-..+....... ..+...|. .++++...- ..-...... |-.- -..
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred ecCceeEecCCcccccchhhhhhcc-ceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 4578999999999999888777642 55666665 444432211 111111112 1111 112
Q ss_pred --CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 244 --KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 244 --~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
.||+|.++-+++..+...... +-.....++ ++|.+++
T Consensus 194 ~~~ydlIlsSetiy~~~~~~~~~-~~~r~~l~~-~D~~~~~ 232 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSIDSLAVLY-LLHRPCLLK-TDGVFYV 232 (282)
T ss_pred ccchhhhhhhhhhhCcchhhhhH-hhhhhhcCC-ccchhhh
Confidence 489999888888755443322 333444556 7776654
|
|
| >PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional | Back alignment and domain information |
|---|
Probab=86.04 E-value=0.74 Score=40.77 Aligned_cols=47 Identities=11% Similarity=0.186 Sum_probs=41.8
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..+.+.|.+. +.+++.|||+.+++ ++.-+||=|+.|+..|++.+..
T Consensus 7 ~~~Il~~L~~~-~~v~v~eLa~~l~V---S~~TIRRDL~~Le~~g~l~r~~ 53 (256)
T PRK10434 7 QAAILEYLQKQ-GKTSVEELAQYFDT---TGTTIRKDLVILEHAGTVIRTY 53 (256)
T ss_pred HHHHHHHHHHc-CCEEHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEE
Confidence 34567888875 69999999999999 8899999999999999999986
|
|
| >PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication | Back alignment and domain information |
|---|
Probab=85.98 E-value=0.99 Score=37.01 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=40.2
Q ss_pred CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 45 PITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 45 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
-+|..+||+.+|+ +.+.+.|.+..|...+++.+.. .|.|.++|.-.
T Consensus 75 ~~t~~~ia~~l~i---S~~Tv~r~ik~L~e~~iI~k~~------~G~Y~iNP~~~ 120 (165)
T PF05732_consen 75 VATQKEIAEKLGI---SKPTVSRAIKELEEKNIIKKIR------NGAYMINPNFF 120 (165)
T ss_pred EeeHHHHHHHhCC---CHHHHHHHHHHHHhCCcEEEcc------CCeEEECcHHh
Confidence 3589999999999 7899999999999999999987 58899887543
|
; GO: 0006260 DNA replication, 0006276 plasmid maintenance |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=85.90 E-value=1 Score=39.86 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=48.9
Q ss_pred HHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCCCCCccEEEecchhccCChHHHHHHHHHHHhhCCCCCc
Q 018775 200 ALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSG 278 (350)
Q Consensus 200 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG 278 (350)
++.+|.++.++.+++++|. +..++.+.+..-+.-...+ .+....+|+|+++ .|......+++++...++ +|.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvla-----vP~~~~~~~l~~~~~~~~-~~~ 73 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLA-----VPVSAIEDVLEEIAPYLK-PGA 73 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE------S-HHHHHHHHHHHHCGS--TTS
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEc-----CCHHHHHHHHHHhhhhcC-CCc
Confidence 3567888888999999998 7777777543333322222 2234458999874 456667888999999888 876
Q ss_pred eEE
Q 018775 279 KLV 281 (350)
Q Consensus 279 ~ll 281 (350)
.+.
T Consensus 74 iv~ 76 (258)
T PF02153_consen 74 IVT 76 (258)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK10411 DNA-binding transcriptional activator FucR; Provisional | Back alignment and domain information |
|---|
Probab=85.79 E-value=1.2 Score=38.93 Aligned_cols=45 Identities=18% Similarity=0.323 Sum_probs=39.7
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+.+.|.+. +.++.+|||+.+++ ++.-++|-|..|...|.+.+..
T Consensus 8 ~Il~~l~~~-~~~~~~eLa~~l~V---S~~TiRRdL~~L~~~~~l~r~~ 52 (240)
T PRK10411 8 AIVDLLLNH-TSLTTEALAEQLNV---SKETIRRDLNELQTQGKILRNH 52 (240)
T ss_pred HHHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 466777665 79999999999999 8899999999999999998865
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=85.79 E-value=3 Score=38.71 Aligned_cols=94 Identities=20% Similarity=0.140 Sum_probs=66.0
Q ss_pred cceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---CCCeEEEecc-CC----C-CCC-CccEEEecchh
Q 018775 187 IQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPV---CEGIFHVGGD-MF----D-AIP-KADAVFMKWIL 254 (350)
Q Consensus 187 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d-~~----~-~~p-~~D~i~~~~vl 254 (350)
..+|+=+||| .|.++..+++.+.-.++++.|. +.-++.|++ .+.+.....+ .. + .-. .+|+++=.--
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 3399999999 6788888888888889999998 888888865 1222222221 10 1 112 4898876443
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
....+..+.++++ |||++.++-.....
T Consensus 248 -------~~~~~~~ai~~~r-~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 -------SPPALDQALEALR-PGGTVVVVGVYGGE 274 (350)
T ss_pred -------CHHHHHHHHHHhc-CCCEEEEEeccCCc
Confidence 1246889999999 99999998776655
|
|
| >COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.10 E-value=1 Score=39.86 Aligned_cols=46 Identities=11% Similarity=0.242 Sum_probs=41.6
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
-.+++.|.+. |.++++|||+.+++ ++.-+||=|+.|+..|++.+..
T Consensus 8 ~~Il~~l~~~-g~v~v~eLa~~~~V---S~~TIRRDL~~Le~~g~l~R~h 53 (253)
T COG1349 8 QKILELLKEK-GKVSVEELAELFGV---SEMTIRRDLNELEEQGLLLRVH 53 (253)
T ss_pred HHHHHHHHHc-CcEEHHHHHHHhCC---CHHHHHHhHHHHHHCCcEEEEe
Confidence 3467788776 79999999999999 8999999999999999999986
|
|
| >PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors | Back alignment and domain information |
|---|
Probab=84.80 E-value=0.5 Score=35.49 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=33.4
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
-|++.|... +.++-++||+.+|+ +..-++++|..|...|++....
T Consensus 17 ~Il~~L~~~-~~l~de~la~~~~l---~~~~vRkiL~~L~~~~lv~~~~ 61 (105)
T PF02002_consen 17 RILDALLRK-GELTDEDLAKKLGL---KPKEVRKILYKLYEDGLVSYRR 61 (105)
T ss_dssp HHHHHHHHH---B-HHHHHHTT-S----HHHHHHHHHHHHHHSS-EEEE
T ss_pred HHHHHHHHc-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCeEEEE
Confidence 357777654 68999999999999 8899999999999999997654
|
Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A. |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=84.55 E-value=2.1 Score=37.67 Aligned_cols=35 Identities=14% Similarity=0.369 Sum_probs=25.7
Q ss_pred cceEEEecCCchHHHHHHHHHCC--------CCcEEEecc-hhH
Q 018775 187 IQSLADVGGGTGGALAEIVKSYP--------HIKGINFDL-PHV 221 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p--------~~~~~~~D~-~~~ 221 (350)
..+|+|+|+|.|.++..+++... .++++.++. |..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L 62 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYL 62 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHH
Confidence 58999999999999999888543 357888887 443
|
; PDB: 4F3N_A 1ZKD_B. |
| >PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term | Back alignment and domain information |
|---|
Probab=84.30 E-value=1.3 Score=33.99 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=34.0
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.++|++|||+.+.+ ++++++.+|+.|.+.|.|.-..
T Consensus 18 ~~vtl~elA~~l~c---S~Rn~r~lLkkm~~~gWi~W~p 53 (115)
T PF12793_consen 18 VEVTLDELAELLFC---SRRNARTLLKKMQEEGWITWQP 53 (115)
T ss_pred cceeHHHHHHHhCC---CHHHHHHHHHHHHHCCCeeeeC
Confidence 57899999999999 8899999999999999999986
|
|
| >PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4 | Back alignment and domain information |
|---|
Probab=83.88 E-value=0.92 Score=31.70 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=24.4
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhh
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLV 73 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~ 73 (350)
++..|.. |.|+|.++||..+|+ +.+.++..|..+-
T Consensus 29 LLr~LA~-G~PVt~~~LA~a~g~---~~e~v~~~L~~~p 63 (77)
T PF12324_consen 29 LLRLLAK-GQPVTVEQLAAALGW---PVEEVRAALAAMP 63 (77)
T ss_dssp HHHHHTT-TS-B-HHHHHHHHT-----HHHHHHHHHH-T
T ss_pred HHHHHHc-CCCcCHHHHHHHHCC---CHHHHHHHHHhCC
Confidence 6777877 589999999999999 7777777777664
|
99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A. |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.84 E-value=2.6 Score=38.78 Aligned_cols=63 Identities=21% Similarity=0.380 Sum_probs=40.0
Q ss_pred cchHHHHHHHHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHC----C----CCcEEEecc-hhHhh
Q 018775 155 PQFNNLFNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY----P----HIKGINFDL-PHVVA 223 (350)
Q Consensus 155 ~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p----~~~~~~~D~-~~~~~ 223 (350)
|+....|...++.+.. ...+.+. .+....++++|+|.|.++..+++.. | .+++.+++. ++..+
T Consensus 52 pels~lFGella~~~~----~~wq~~g--~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~ 123 (370)
T COG1565 52 PELSQLFGELLAEQFL----QLWQELG--RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRA 123 (370)
T ss_pred hhHHHHHHHHHHHHHH----HHHHHhc--CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHH
Confidence 4555556655544321 2222333 4557899999999999998888743 3 567888887 54433
|
|
| >PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional | Back alignment and domain information |
|---|
Probab=83.79 E-value=1.4 Score=40.29 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=43.5
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCc-eeecccCCCCCCCeEecChhc
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGI-FAVHQSSDGGDETLYKMTHIS 98 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~-l~~~~~~~~~~~~~~~~t~~s 98 (350)
..+++.|.+. .+.+.++||+.+|+ +...+.+.++.|...|+ +.... +..|++.+..
T Consensus 7 ~~il~~L~~~-~~~s~~~LA~~lgv---sr~tV~~~l~~L~~~G~~i~~~~------~~Gy~L~~~~ 63 (319)
T PRK11886 7 LQLLSLLADG-DFHSGEQLGEELGI---SRAAIWKHIQTLEEWGLDIFSVK------GKGYRLAEPL 63 (319)
T ss_pred HHHHHHHHcC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCceEEec------CCeEEecCcc
Confidence 4566677653 68999999999999 88999999999999999 54443 3468765543
|
|
| >PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins | Back alignment and domain information |
|---|
Probab=83.59 E-value=0.78 Score=35.31 Aligned_cols=55 Identities=9% Similarity=0.222 Sum_probs=41.9
Q ss_pred HHHhcChhhhhhhCCCCCCHHHHHhhcCC--CCCCcccHHHHHHHhhcCCceeeccc
Q 018775 29 SAVELRLADIMHSHGSPITLPQLASRIDS--SCPDIPYLARLMRMLVRKGIFAVHQS 83 (350)
Q Consensus 29 ~~~~lglfd~L~~~~~~~t~~ela~~~~~--~~~~~~~l~~~L~~L~~~g~l~~~~~ 83 (350)
+..+.-|++.|.+.+++.|++||.+.+.- +..+..-+.|.|+.|...|++.+...
T Consensus 7 T~~R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~~~ 63 (120)
T PF01475_consen 7 TPQRLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKIEF 63 (120)
T ss_dssp HHHHHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEEEc
Confidence 44566778888765579999999998842 11155679999999999999999864
|
These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B .... |
| >PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A) | Back alignment and domain information |
|---|
Probab=83.58 E-value=0.86 Score=33.98 Aligned_cols=48 Identities=6% Similarity=0.198 Sum_probs=37.3
Q ss_pred HhcChhhhhhh---CCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeec
Q 018775 31 VELRLADIMHS---HGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVH 81 (350)
Q Consensus 31 ~~lglfd~L~~---~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 81 (350)
+.-.||+.|.. ...++++++|++++++ ++..++..|+.|...|++--.
T Consensus 48 ~~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~---~~~~v~~al~~L~~eG~IYsT 98 (102)
T PF08784_consen 48 LQDKVLNFIKQQPNSEEGVHVDEIAQQLGM---SENEVRKALDFLSNEGHIYST 98 (102)
T ss_dssp HHHHHHHHHHC----TTTEEHHHHHHHSTS----HHHHHHHHHHHHHTTSEEES
T ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHhCc---CHHHHHHHHHHHHhCCeEecc
Confidence 34455555544 1268999999999999 899999999999999998765
|
RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A. |
| >PF02295 z-alpha: Adenosine deaminase z-alpha domain; InterPro: IPR000607 Double-stranded RNA-specific adenosine deaminase (3 | Back alignment and domain information |
|---|
Probab=83.47 E-value=0.51 Score=32.17 Aligned_cols=60 Identities=15% Similarity=0.223 Sum_probs=42.3
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
.+-.|++.|... ++.++-.+|...|++- +..-+.+.|..|...|.|.+++.+ +-.|++++
T Consensus 5 ~ee~Il~~L~~~-g~~~a~~ia~~~~L~~-~kk~VN~~LY~L~k~g~v~k~~~~----PP~W~l~~ 64 (66)
T PF02295_consen 5 LEEKILDFLKEL-GGSTATAIAKALGLSV-PKKEVNRVLYRLEKQGKVCKEGGT----PPKWSLTE 64 (66)
T ss_dssp HHHHHHHHHHHH-TSSEEEHHHHHHHHTS--HHHHHHHHHHHHHTTSEEEECSS----STEEEE-H
T ss_pred HHHHHHHHHHhc-CCccHHHHHHHhCcch-hHHHHHHHHHHHHHCCCEeeCCCC----CCceEecc
Confidence 455677777765 3666666766666510 478899999999999999998643 56787764
|
5 from EC) converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. DRADA has been found to modify adenosines in AU-rich regions more frequently, probably due to the relative ease of melting A/U base pairs compared to G/C base pairs. The protein functions to modify viral RNA genomes, and may be responsible for hypermutation of certain negative-stranded viruses. DRADA edits the mRNAs for the glutamate receptor subunits by site-selective adenosine deamination. The DRADA repeat is also found in viral E3 proteins, which contain a double-stranded RNA-binding domain.; GO: 0003723 RNA binding, 0003726 double-stranded RNA adenosine deaminase activity; PDB: 1OYI_A 3EYI_A 2L4M_A 2HEO_D 1J75_A 1SFU_B 3IRR_B 2ACJ_C 3F22_B 2L54_A .... |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=83.45 E-value=6.4 Score=33.59 Aligned_cols=100 Identities=16% Similarity=0.165 Sum_probs=61.1
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCC--cEEEecc-hhHhhhCCC---------------------------------
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHI--KGINFDL-PHVVATAPV--------------------------------- 227 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~--~~~~~D~-~~~~~~a~~--------------------------------- 227 (350)
-.++.++-|=.||.|.++.-+.--+++. .+.+.|+ +++++.|++
T Consensus 49 ~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl 128 (246)
T PF11599_consen 49 GKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEAL 128 (246)
T ss_dssp S-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred CCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 3568899999999999987766555442 4677787 777765532
Q ss_pred ---------------CCCeEEEeccCCCCC-------C-CccEEEec---chhccCC----hHHHHHHHHHHHhhCCCCC
Q 018775 228 ---------------CEGIFHVGGDMFDAI-------P-KADAVFMK---WILHDWD----DEACVKILKNCRQAIPDKS 277 (350)
Q Consensus 228 ---------------~~~i~~~~~d~~~~~-------p-~~D~i~~~---~vlh~~~----~~~~~~~L~~~~~~L~~pg 277 (350)
.....+.+.|++++. + ..|+|+.- .-+-+|. ..-...+|..++.+|. ++
T Consensus 129 ~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp-~~ 207 (246)
T PF11599_consen 129 ESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLP-ER 207 (246)
T ss_dssp HHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS--TT
T ss_pred HHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCC-CC
Confidence 123667788999832 1 26888762 3344464 3457799999999998 88
Q ss_pred ceEEEEe
Q 018775 278 GKLVLVE 284 (350)
Q Consensus 278 G~lli~e 284 (350)
+.+.|.+
T Consensus 208 sVV~v~~ 214 (246)
T PF11599_consen 208 SVVAVSD 214 (246)
T ss_dssp -EEEEEE
T ss_pred cEEEEec
Confidence 8877744
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PRK05638 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=83.39 E-value=1.6 Score=42.09 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=47.5
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcC--CCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 32 ELRLADIMHSHGSPITLPQLASRID--SSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~--~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
++.|+..|.+ ++++..||++.++ + +...+++.|+.|...|+|+..... +..-.|++|+.+..+
T Consensus 373 r~~IL~~L~~--~~~~~~el~~~l~~~~---s~~~v~~hL~~Le~~GLV~~~~~~--g~~~~Y~Lt~~g~~~ 437 (442)
T PRK05638 373 KLEILKILSE--REMYGYEIWKALGKPL---KYQAVYQHIKELEELGLIEEAYRK--GRRVYYKLTEKGRRL 437 (442)
T ss_pred HHHHHHHHhh--CCccHHHHHHHHcccC---CcchHHHHHHHHHHCCCEEEeecC--CCcEEEEECcHHHHH
Confidence 3556777776 6899999999998 6 778999999999999999864111 112358899877633
|
|
| >COG3413 Predicted DNA binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.27 E-value=1.9 Score=37.02 Aligned_cols=44 Identities=18% Similarity=0.204 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHh
Q 018775 22 ADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRML 72 (350)
Q Consensus 22 ~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L 72 (350)
..-.+|+.|.+.|-||. + ..++.++||+.+|+ .+..+...||..
T Consensus 159 rQ~~vL~~A~~~GYFd~-P---R~~~l~dLA~~lGI---Skst~~ehLRrA 202 (215)
T COG3413 159 RQLEVLRLAYKMGYFDY-P---RRVSLKDLAKELGI---SKSTLSEHLRRA 202 (215)
T ss_pred HHHHHHHHHHHcCCCCC-C---ccCCHHHHHHHhCC---CHHHHHHHHHHH
Confidence 35579999999999997 3 57899999999999 666666666644
|
|
| >PRK11639 zinc uptake transcriptional repressor; Provisional | Back alignment and domain information |
|---|
Probab=82.67 E-value=2.3 Score=34.97 Aligned_cols=54 Identities=15% Similarity=0.237 Sum_probs=42.7
Q ss_pred HHHhcChhhhhhhCCCCCCHHHHHhhcCC--CCCCcccHHHHHHHhhcCCceeecc
Q 018775 29 SAVELRLADIMHSHGSPITLPQLASRIDS--SCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 29 ~~~~lglfd~L~~~~~~~t~~ela~~~~~--~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+-.+.-|++.|...++++|+++|.+.+.- +..+..-++|.|+.|+..|+|.+..
T Consensus 25 T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~~ 80 (169)
T PRK11639 25 TPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKVE 80 (169)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEEe
Confidence 45667778888665579999999988842 1226678999999999999999986
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=82.47 E-value=8.2 Score=35.09 Aligned_cols=97 Identities=16% Similarity=0.125 Sum_probs=67.8
Q ss_pred CCCcceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-C-CCeEEEec-----cCCC----CCC--CccEE
Q 018775 184 FDSIQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPV-C-EGIFHVGG-----DMFD----AIP--KADAV 248 (350)
Q Consensus 184 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~-~~i~~~~~-----d~~~----~~p--~~D~i 248 (350)
.+.+.+||=+|+| +|..+...++.+-..++++.|+ ++-++.|++ . .-+..... ++.+ ... .+|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 6678999999999 7888888889998889999999 888888886 1 11111111 1111 011 27887
Q ss_pred EecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 249 FMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 249 ~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
+-...++ ..++.+..+++ +||+++++.+-.+.
T Consensus 247 ~dCsG~~--------~~~~aai~a~r-~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 247 FDCSGAE--------VTIRAAIKATR-SGGTVVLVGMGAEE 278 (354)
T ss_pred EEccCch--------HHHHHHHHHhc-cCCEEEEeccCCCc
Confidence 7766554 34667788899 99998887755544
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.38 E-value=6.9 Score=35.09 Aligned_cols=86 Identities=19% Similarity=0.111 Sum_probs=55.7
Q ss_pred ceEEEecCC--chHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEe-ccC-CCCCCCccEEEecchhccCChHHH
Q 018775 188 QSLADVGGG--TGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVG-GDM-FDAIPKADAVFMKWILHDWDDEAC 262 (350)
Q Consensus 188 ~~vLDvG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~-~d~-~~~~p~~D~i~~~~vlh~~~~~~~ 262 (350)
.+|+=+|.| -|.++..+.++.+...+++.|. ....+.+...+ +.... .+. ......+|+|+++ .|....
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg-v~d~~~~~~~~~~~~~aD~Viva-----vPi~~~ 77 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG-VIDELTVAGLAEAAAEADLVIVA-----VPIEAT 77 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC-cccccccchhhhhcccCCEEEEe-----ccHHHH
Confidence 456667766 4566677777777778889887 55666655321 22221 222 2244458999874 456667
Q ss_pred HHHHHHHHhhCCCCCceE
Q 018775 263 VKILKNCRQAIPDKSGKL 280 (350)
Q Consensus 263 ~~~L~~~~~~L~~pgG~l 280 (350)
..+++++...|+ ||..+
T Consensus 78 ~~~l~~l~~~l~-~g~iv 94 (279)
T COG0287 78 EEVLKELAPHLK-KGAIV 94 (279)
T ss_pred HHHHHHhcccCC-CCCEE
Confidence 889999999898 87544
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.35 E-value=3.1 Score=39.53 Aligned_cols=101 Identities=16% Similarity=0.052 Sum_probs=58.0
Q ss_pred cceEEEecCCchHHHHHHHH--HCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC---CCC---CccEEEe
Q 018775 187 IQSLADVGGGTGGALAEIVK--SYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD---AIP---KADAVFM 250 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~--~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~---~~p---~~D~i~~ 250 (350)
+..+.|+|.|.|.-.-.+.. ..-.-.++.+|. ..+...... ...+.+...-+.. |.+ .||++++
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence 56778888886654433333 222335677776 444443322 1122222212222 322 3999999
Q ss_pred cchhccCChHH-HHHHHH-HHHhhCCCCCceEEEEeeeec
Q 018775 251 KWILHDWDDEA-CVKILK-NCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 251 ~~vlh~~~~~~-~~~~L~-~~~~~L~~pgG~lli~e~~~~ 288 (350)
+++||+.+... ...+.+ ..+...+ +|+.++++|.-..
T Consensus 281 ah~l~~~~s~~~R~~v~~s~~r~~~r-~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 281 AHKLHELGSKFSRLDVPESLWRKTDR-SGYFLVIIEKGTT 319 (491)
T ss_pred eeeeeccCCchhhhhhhHHHHHhccC-CCceEEEEecCCc
Confidence 99999987543 334444 4455668 9999999986443
|
|
| >PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms | Back alignment and domain information |
|---|
Probab=82.18 E-value=1.1 Score=27.91 Aligned_cols=30 Identities=7% Similarity=0.282 Sum_probs=20.5
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHH
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMR 70 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~ 70 (350)
+.+.+. .+.|+.+||+.+|+ +..-+.|+|+
T Consensus 14 i~~l~~---~G~si~~IA~~~gv---sr~TvyR~l~ 43 (45)
T PF02796_consen 14 IKELYA---EGMSIAEIAKQFGV---SRSTVYRYLN 43 (45)
T ss_dssp HHHHHH---TT--HHHHHHHTTS----HHHHHHHHC
T ss_pred HHHHHH---CCCCHHHHHHHHCc---CHHHHHHHHh
Confidence 344444 35999999999999 7788888775
|
Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C .... |
| >PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C | Back alignment and domain information |
|---|
Probab=81.99 E-value=1 Score=28.45 Aligned_cols=40 Identities=10% Similarity=0.294 Sum_probs=23.2
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGI 77 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~ 77 (350)
+..+...+.+ +.|..+||+.+|+ +...+.+|++.....|+
T Consensus 7 R~~ii~l~~~---G~s~~~ia~~lgv---s~~Tv~~w~kr~~~~G~ 46 (50)
T PF13384_consen 7 RAQIIRLLRE---GWSIREIAKRLGV---SRSTVYRWIKRYREEGL 46 (50)
T ss_dssp ---HHHHHHH---T--HHHHHHHHTS----HHHHHHHHT-------
T ss_pred HHHHHHHHHC---CCCHHHHHHHHCc---CHHHHHHHHHHcccccc
Confidence 4455555553 8999999999999 89999999998776664
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=81.84 E-value=1.9 Score=37.41 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=43.5
Q ss_pred HHHHhcccCCCCc--ceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC-------C--------CCCeEEEec
Q 018775 175 ALVSHYKDGFDSI--QSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP-------V--------CEGIFHVGG 236 (350)
Q Consensus 175 ~~~~~~~~~~~~~--~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~--------~~~i~~~~~ 236 (350)
.+++... ++++ .+|||.-+|-|.-+.-++.. +.++++++. |-+....+ . ..||+++.+
T Consensus 64 ~l~kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 64 PLAKAVG--LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp HHHHHTT---BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred HHHHHhC--CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 3445554 4443 49999999999999988865 678999998 43322111 1 358999999
Q ss_pred cCCC--CCC--CccEEEecchh
Q 018775 237 DMFD--AIP--KADAVFMKWIL 254 (350)
Q Consensus 237 d~~~--~~p--~~D~i~~~~vl 254 (350)
|..+ ..+ ++|+|.+--++
T Consensus 140 d~~~~L~~~~~s~DVVY~DPMF 161 (234)
T PF04445_consen 140 DALEYLRQPDNSFDVVYFDPMF 161 (234)
T ss_dssp -CCCHCCCHSS--SEEEE--S-
T ss_pred CHHHHHhhcCCCCCEEEECCCC
Confidence 9888 332 49999884433
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B | Back alignment and domain information |
|---|
Probab=81.19 E-value=1.7 Score=26.58 Aligned_cols=37 Identities=11% Similarity=0.250 Sum_probs=25.6
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHH
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRM 71 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~ 71 (350)
++..|+..|..+ +..|..+||+.+|+ ++..+.+=++.
T Consensus 4 ~D~~Il~~Lq~d-~r~s~~~la~~lgl---S~~~v~~Ri~r 40 (42)
T PF13404_consen 4 LDRKILRLLQED-GRRSYAELAEELGL---SESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHH--TTS-HHHHHHHHTS----HHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCccHHHHHHHHCc---CHHHHHHHHHH
Confidence 456678888875 79999999999999 66655544443
|
... |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=81.08 E-value=4.2 Score=36.02 Aligned_cols=37 Identities=11% Similarity=0.217 Sum_probs=32.0
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-----CCCcEEEecchh
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-----PHIKGINFDLPH 220 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~~~ 220 (350)
+.+...++|+|||.|.++..+.+.. +...++.+|...
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 5678899999999999999999987 567899999743
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >TIGR01321 TrpR trp operon repressor, proteobacterial | Back alignment and domain information |
|---|
Probab=81.07 E-value=1.8 Score=31.60 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=34.1
Q ss_pred HHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhh
Q 018775 27 LKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLV 73 (350)
Q Consensus 27 l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~ 73 (350)
-..+.++||+..|-. +++|..|||+.+|+ +...+.|+=+.|.
T Consensus 39 ~~l~~R~~i~~~Ll~--~~~tQrEIa~~lGi---S~atIsR~sn~lk 80 (94)
T TIGR01321 39 EDLGDRIRIVNELLN--GNMSQREIASKLGV---SIATITRGSNNLK 80 (94)
T ss_pred HHHHHHHHHHHHHHh--CCCCHHHHHHHhCC---ChhhhhHHHhhcc
Confidence 345678999998876 79999999999999 7777777776665
|
This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis. |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.01 E-value=7.1 Score=35.45 Aligned_cols=90 Identities=16% Similarity=-0.003 Sum_probs=50.4
Q ss_pred cceEEEecCCc-hH-HHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCCCCCccEEEecchhccCChHHHH
Q 018775 187 IQSLADVGGGT-GG-ALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDAIPKADAVFMKWILHDWDDEACV 263 (350)
Q Consensus 187 ~~~vLDvG~G~-G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~p~~D~i~~~~vlh~~~~~~~~ 263 (350)
..+|.=||+|. |. ++..+.+.....+++++|. ++..+.+++..-......+..+....+|+|+..- +.....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiav-----p~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCV-----PVGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECC-----CHHHHH
Confidence 45788899885 32 3333444332246888888 6666655432111111112211234589888743 334455
Q ss_pred HHHHHHHhhCCCCCceEEE
Q 018775 264 KILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 264 ~~L~~~~~~L~~pgG~lli 282 (350)
.+++++...++ ||..++.
T Consensus 81 ~v~~~l~~~l~-~~~iv~d 98 (307)
T PRK07502 81 AVAAEIAPHLK-PGAIVTD 98 (307)
T ss_pred HHHHHHHhhCC-CCCEEEe
Confidence 67888888888 8875543
|
|
| >PF13518 HTH_28: Helix-turn-helix domain | Back alignment and domain information |
|---|
Probab=80.96 E-value=1.8 Score=27.44 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=26.8
Q ss_pred CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCc
Q 018775 45 PITLPQLASRIDSSCPDIPYLARLMRMLVRKGI 77 (350)
Q Consensus 45 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~ 77 (350)
+.|+.++|+.+|+ +...+.+|++.....|+
T Consensus 12 g~s~~~~a~~~gi---s~~tv~~w~~~y~~~G~ 41 (52)
T PF13518_consen 12 GESVREIAREFGI---SRSTVYRWIKRYREGGI 41 (52)
T ss_pred CCCHHHHHHHHCC---CHhHHHHHHHHHHhcCH
Confidence 3499999999999 88999999999988775
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=80.59 E-value=10 Score=34.93 Aligned_cols=94 Identities=16% Similarity=0.139 Sum_probs=56.2
Q ss_pred CCCcceEEEecCC-chHHHHHHHHH-CCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCCCCCccEEEecchhccCChH
Q 018775 184 FDSIQSLADVGGG-TGGALAEIVKS-YPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDAIPKADAVFMKWILHDWDDE 260 (350)
Q Consensus 184 ~~~~~~vLDvG~G-~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~p~~D~i~~~~vlh~~~~~ 260 (350)
..++.+||=+||| .|.++..++++ ....+++++|. ++-.+.++..... +...+.. ....+|+|+=.-- . .
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~-~~~~~~~-~~~g~d~viD~~G-~----~ 233 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADET-YLIDDIP-EDLAVDHAFECVG-G----R 233 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCce-eehhhhh-hccCCcEEEECCC-C----C
Confidence 3567889989976 55666677775 55567888887 6555655532211 1111111 1114788874221 1 0
Q ss_pred HHHHHHHHHHhhCCCCCceEEEEee
Q 018775 261 ACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 261 ~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
.....+....+.++ +||+++++-.
T Consensus 234 ~~~~~~~~~~~~l~-~~G~iv~~G~ 257 (341)
T cd08237 234 GSQSAINQIIDYIR-PQGTIGLMGV 257 (341)
T ss_pred ccHHHHHHHHHhCc-CCcEEEEEee
Confidence 01245788889999 9999998764
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=80.35 E-value=2 Score=34.75 Aligned_cols=100 Identities=10% Similarity=-0.041 Sum_probs=56.4
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-CCCeE-EEeccCCCCC----CCccEEEecchhccCC--
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-CEGIF-HVGGDMFDAI----PKADAVFMKWILHDWD-- 258 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-~~~i~-~~~~d~~~~~----p~~D~i~~~~vlh~~~-- 258 (350)
+.+.+-+|...=+.= .++-++...++..++... ++.-.+ .+|++ +.+.|+.++. ..||.+.+.+++.|..
T Consensus 2 ~~~g~V~GS~~PwvE-v~aL~~GA~~iltveyn~-L~i~~~~~dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh~GLG 79 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVE-VMALQHGAAKILTVEYNK-LEIQEEFRDRLSSILPVDFAKNWQKYAGSFDFAASFSSIEHFGLG 79 (177)
T ss_pred CceEEEEecCCchhh-HHHHHcCCceEEEEeecc-cccCcccccccccccHHHHHHHHHHhhccchhhheechhcccccc
Confidence 345666666543332 233333344555555311 111111 23333 3334554421 2499999999887752
Q ss_pred --------hHHHHHHHHHHHhhCCCCCceEEEEeeeecCC
Q 018775 259 --------DEACVKILKNCRQAIPDKSGKLVLVEIVVQED 290 (350)
Q Consensus 259 --------~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~ 290 (350)
.-+ ...+.+++.+|| |||.|++.-++-.+.
T Consensus 80 RYGDPidp~Gd-l~~m~~i~~vLK-~GG~L~l~vPvG~d~ 117 (177)
T PF03269_consen 80 RYGDPIDPIGD-LRAMAKIKCVLK-PGGLLFLGVPVGTDA 117 (177)
T ss_pred ccCCCCCcccc-HHHHHHHHHhhc-cCCeEEEEeecCCcc
Confidence 222 356788999999 999999988777654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 350 | ||||
| 1kyw_A | 365 | Crystal Structure Analysis Of Caffeic Acid5-Hydroxy | 9e-69 | ||
| 3reo_A | 368 | Monolignol O-Methyltransferase (Momt) Length = 368 | 3e-67 | ||
| 2qyo_A | 357 | Crystal Structure Of Isoflavone O-Methyltransferase | 6e-63 | ||
| 1fp2_A | 352 | Crystal Structure Analysis Of Isoflavone O-Methyltr | 6e-61 | ||
| 3p9c_A | 364 | Crystal Structure Of Perennial Ryegrass Lpomt1 Boun | 1e-59 | ||
| 1fpx_A | 352 | Crystal Structure Analysis Of Selenomethionine Subs | 5e-56 | ||
| 1zgj_A | 354 | Crystal Structure Of Isoflavanone 4'-O-Methyltransf | 4e-51 | ||
| 1zga_A | 357 | Crystal Structure Of Isoflavanone 4'-o-methyltransf | 5e-51 | ||
| 1zg3_A | 358 | Crystal Structure Of The Isoflavanone 4'-O-Methyltr | 5e-51 | ||
| 1fp1_D | 372 | Crystal Structure Analysis Of Chalcone O-Methyltran | 2e-48 | ||
| 1fpq_A | 372 | Crystal Structure Analysis Of Selenomethionine Subs | 1e-41 | ||
| 3gwz_A | 369 | Structure Of The Mitomycin 7-O-Methyltransferase Mm | 7e-21 | ||
| 3lst_A | 348 | Crystal Structure Of Calo1, Methyltransferase In Ca | 1e-19 | ||
| 1qzz_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 1e-18 | ||
| 2ip2_A | 334 | Structure Of The Pyocyanin Biosynthetic Protein Phz | 5e-17 | ||
| 1tw2_A | 360 | Crystal Structure Of Carminomycin-4-O-Methyltransfe | 7e-14 | ||
| 4a6d_A | 353 | Crystal Structure Of Human N-Acetylserotonin Methyl | 1e-13 | ||
| 1xds_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 4e-12 | ||
| 3i53_A | 332 | Crystal Structure Of An O-Methyltransferase (Ncsb1) | 1e-07 | ||
| 1x19_A | 359 | Crystal Structure Of Bchu Involved In Bacteriochlor | 2e-06 |
| >pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365 | Back alignment and structure |
|
| >pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368 | Back alignment and structure |
|
| >pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357 | Back alignment and structure |
|
| >pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364 | Back alignment and structure |
|
| >pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354 | Back alignment and structure |
|
| >pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357 | Back alignment and structure |
|
| >pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358 | Back alignment and structure |
|
| >pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369 | Back alignment and structure |
|
| >pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348 | Back alignment and structure |
|
| >pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374 | Back alignment and structure |
|
| >pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334 | Back alignment and structure |
|
| >pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360 | Back alignment and structure |
|
| >pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353 | Back alignment and structure |
|
| >pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adenosyl-L-Methionine (Sam) And 11-Deoxy- Beta-Rhodomycin (Dbra) Length = 374 | Back alignment and structure |
|
| >pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From Neocarzinostatin Biosynthesis In Complex With S-Adenosyl-L- Homocysteine (Sah) Length = 332 | Back alignment and structure |
|
| >pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll C Biosynthesis Length = 359 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 418 bits (1076), Expect = e-147
Identities = 132/358 (36%), Positives = 202/358 (56%), Gaps = 10/358 (2%)
Query: 1 MEVHEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSP---ITLPQLASRIDS 57
+ H QL A MALK+A+EL + +IM P I+ ++A+++ +
Sbjct: 12 IPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPT 71
Query: 58 SCPDIP-YLARLMRMLVRKGIFA--VHQSSDGGDETLYKMTHISKWLLHDSE-LSLAPMI 113
+ P+ P L R++R+L + + + G E LY + + K+L + + +SLAP +
Sbjct: 72 TNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFL 131
Query: 114 LVENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVM 173
L+ ++ LLEPW YL + EGGI F KA+G I+D+ + N +FN M+ + I M
Sbjct: 132 LLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITM 191
Query: 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFH 233
K ++ Y +GF+ + ++ DVGGGTG + IV YP I INFDLPHV+ AP G+ H
Sbjct: 192 KKILEMY-NGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEH 250
Query: 234 VGGDMFDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNN 293
+GGDMFD +PK DA+F+KWI HDW DE C+K+LKNC A+PD GK+++ E ++ +
Sbjct: 251 LGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDH-GKVIVAEYILPPSPDP 309
Query: 294 IFGD-MGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYPQ 350
+ + D +M A+ GGKERTE+E+ L GF K+ S ++E
Sbjct: 310 SIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLKT 367
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 415 bits (1068), Expect = e-146
Identities = 128/349 (36%), Positives = 198/349 (56%), Gaps = 11/349 (3%)
Query: 5 EELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPY 64
E+ + QA +++ ++AF DSM+LK AVE+ + +I+ +HG PI+L L S + I
Sbjct: 11 SEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGN 70
Query: 65 LARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQWLLEP 124
+ RLMR L G F + +E Y +T S+ L+ S+L LAPM+ + L
Sbjct: 71 VRRLMRYLAHNGFFEII----TKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGS 126
Query: 125 WHYLSQCVKEGGI-AFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDG 183
+H L + + E + F G WDF ++P++N FNDAMA +K++ AL
Sbjct: 127 YHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALR-DCDFV 185
Query: 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAIP 243
FD ++S+ DVGGGTG I +++P +K I FD P VV + +VGGDMF +IP
Sbjct: 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIP 245
Query: 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKS--GKLVLVEIVVQEDGN-NIFGDMGL 300
ADAV +K+ILH+W D+ C++ILK C++A+ + GK+ ++++V+ + + N + L
Sbjct: 246 NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKL 305
Query: 301 VFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349
+ D+ M GKER E+EW KL + GF KI + S+IE YP
Sbjct: 306 LMDVNMACL--NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 408 bits (1051), Expect = e-143
Identities = 85/350 (24%), Positives = 149/350 (42%), Gaps = 24/350 (6%)
Query: 5 EELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPY 64
+ L+ +++ + + AL++A + +AD + P T +LA+ + D
Sbjct: 17 MDRLQSALALYEEAMGYTYAAALRAAAAVGVADHLV--DGPRTPAELAAATGT---DADA 71
Query: 65 LARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQWLLEP 124
L R++R+L + + SDG + +T L DS + IL+ +
Sbjct: 72 LRRVLRLLAVRDVVR---ESDGR----FALTDKGAALRSDSPVPARAGILMFTDTMFWTM 124
Query: 125 WHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGF 184
H ++ + AF G + + + L+ + M + L F
Sbjct: 125 SHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAG--DF 182
Query: 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATA-----PVCEGIFHVGGDMF 239
+ ++ADVGGG GG L +++ +P ++G+ D VVA V V GD
Sbjct: 183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFL 242
Query: 240 DAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMG 299
+P AD +K ILH+W DE V+IL NCR+ +P G++++++ VV E +
Sbjct: 243 REVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAH-GRVLVIDAVVPEGND---AHQS 298
Query: 300 LVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349
D +M A G+ERT E L G +++ ++ SI P
Sbjct: 299 KEMDFMMLAA-RTGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 406 bits (1046), Expect = e-142
Identities = 123/354 (34%), Positives = 189/354 (53%), Gaps = 9/354 (2%)
Query: 2 EVHEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMH-SHGSPITLPQLASRIDSSCP 60
QL + M LK+A+EL L +I+ + G +T ++A+++ S+
Sbjct: 12 MAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAAN 71
Query: 61 --DIPYLARLMRMLVRKGIFA--VHQSSDGGDETLYKMTHISKWLLHDSE-LSLAPMILV 115
+ R++R+L + V + DG Y + K+L + + +S+A + L+
Sbjct: 72 PEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALM 131
Query: 116 ENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKA 175
++ L+E W+YL V +GGI F KA+G +++ P+FN +FN+ M + I+ K
Sbjct: 132 NQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKK 191
Query: 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVG 235
L+ Y GF+ + +L DVGGG G +A I YP IKG+NFDLPHV++ AP G+ HVG
Sbjct: 192 LLELY-HGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVG 250
Query: 236 GDMFDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDG-NNI 294
GDMF +P D + MKWILHDW D+ C +LKNC A+P GK+VLV+ ++ + N
Sbjct: 251 GDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAH-GKVVLVQCILPVNPEANP 309
Query: 295 FGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAY 348
D++M AH GG+ER E+E+ L GF K + A IE
Sbjct: 310 SSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFT 363
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 403 bits (1036), Expect = e-141
Identities = 132/357 (36%), Positives = 194/357 (54%), Gaps = 13/357 (3%)
Query: 4 HEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIP 63
EL Q +++ ++ F SMALKSA+EL +AD +H+HG P+TL +LAS + +
Sbjct: 4 ESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVN 63
Query: 64 YLARLMRMLVRKGIFAVH----QSSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQ 119
L R +R+L G FA + D +E Y +T SK L+ L+ ++ +
Sbjct: 64 ILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHP 123
Query: 120 WLLEPWHYLSQCVKEGG--IAFKKAHGCEIWDFASQSPQFNNL--FNDAMACTAKIVMKA 175
L+ W + E F+ A G WDF ++ + + L F DAMA +++
Sbjct: 124 SSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLV 183
Query: 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVG 235
L + F+ ++SL DVGGGTGG I + +PH+K FD P VV E + VG
Sbjct: 184 LQENK-RVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVG 242
Query: 236 GDMFDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKS--GKLVLVEIVVQEDGN- 292
GDMF +IP ADAV +KW+LHDW+DE +KILKN ++AI K GK+++++I + E +
Sbjct: 243 GDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDD 302
Query: 293 NIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349
++ L +DLVM GKERT+QEW KL+ GF KI + S+IE YP
Sbjct: 303 RGLTELQLDYDLVMLTM-FLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 397 bits (1021), Expect = e-138
Identities = 89/357 (24%), Positives = 151/357 (42%), Gaps = 27/357 (7%)
Query: 2 EVHEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPD 61
+ V ++ + A+ AVEL + +++ P T LA +
Sbjct: 30 PGTAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQEG--PRTATALAEATGA---H 84
Query: 62 IPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQWL 121
L RL+R+L G+F D G + L+ +S LL D +A + W
Sbjct: 85 EQTLRRLLRLLATVGVF-----DDLGHDDLFAQNALSAVLLPDPASPVATDARFQAAPWH 139
Query: 122 LEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYK 181
W L+ V+ G +F A+G W + P+ LFN AM + + + Y
Sbjct: 140 WRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD 199
Query: 182 DGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAP-------VCEGIFHV 234
F + D+GGG G +A ++ ++P ++G + P V A + + +
Sbjct: 200 --FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEIL 257
Query: 235 GGDMFDAIPK-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNN 293
GD F+ IP AD +K +LHDWDD+ V+IL+ A+ +L++++ ++ E
Sbjct: 258 PGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPD-SRLLVIDNLIDERPA- 315
Query: 294 IFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPA-LYSIIEAYP 349
L DL++ GG ER+E E+ LLE+ G + + A I+E
Sbjct: 316 ---ASTLFVDLLLLV-LVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 394 bits (1013), Expect = e-137
Identities = 110/357 (30%), Positives = 178/357 (49%), Gaps = 15/357 (4%)
Query: 4 HEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSP---ITLPQLASRID---S 57
+ L L +A++L L +I+ P ++ ++AS++
Sbjct: 18 EQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQ 77
Query: 58 SCPDIPYLARLMRMLVRKGIFAVH--QSSDGGDETLYKMTHISKWLLHDSEL-SLAPMIL 114
L R++R+L + DGG E +Y ++ + K+L+ D LA
Sbjct: 78 HSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTT 137
Query: 115 VENNQWLLEPWHYLSQCVKEGGI-AFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVM 173
LL+ W + V + I FK HG ++F + + N +FN +M M
Sbjct: 138 FLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEM 197
Query: 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFH 233
K ++ Y GF+ I +L DVGGG+G L I+ YP IKGINFDLP V+ AP GI H
Sbjct: 198 KRMLEIY-TGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEH 256
Query: 234 VGGDMFDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGN- 292
VGGDMF ++P+ DA+ +K + H+W DE C++ L NC +A+ GK+++VE ++ E+ N
Sbjct: 257 VGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPN-GKVIIVEFILPEEPNT 315
Query: 293 NIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII-SMPALYSIIEAY 348
+ + D +MF T GG+ERTE+++ KL + GF + ++ ++E Y
Sbjct: 316 SEESKLVSTLDNLMFI-TVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFY 371
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 380 bits (977), Expect = e-132
Identities = 88/354 (24%), Positives = 148/354 (41%), Gaps = 30/354 (8%)
Query: 4 HEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIP 63
+ L + Q++ S + A L LAD++ S + LA+ + S D
Sbjct: 2 NNSNLAAARNLIQVVTGEWKSRCVYVATRLGLADLIESG--IDSDETLAAAVGS---DAE 56
Query: 64 YLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQWLLE 123
+ RLMR+LV IF Y T S LL D E S M+L ++
Sbjct: 57 RIHRLMRLLVAFEIFQGD------TRDGYANTPTSH-LLRDVEGSFRDMVLFYGEEFH-A 108
Query: 124 PWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDG 183
W + + G F+ A G + + + + P F AM + + +
Sbjct: 109 AWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAMKASN-LAFHEIPRLLDFR 167
Query: 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAP-------VCEGIFHVGG 236
S DVGGG+G I+++ P +G+ D + A E + VGG
Sbjct: 168 GRS---FVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGG 224
Query: 237 DMFDAIP-KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIF 295
DM +P D + I+ D D+ A +++L NCR+A+ G++V++E +
Sbjct: 225 DMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGD-GRVVVIERTISASEP--- 280
Query: 296 GDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349
M +++D+ +F G+ RT +E + LL +GGF +I+ +P +I A
Sbjct: 281 SPMSVLWDVHLFM-ACAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 379 bits (976), Expect = e-132
Identities = 81/350 (23%), Positives = 145/350 (41%), Gaps = 31/350 (8%)
Query: 9 RGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARL 68
R + + A MA++ A LR+AD + + T ++AS + L RL
Sbjct: 4 RAAHIGLRALADLATPMAVRVAATLRVADHIAAG--HRTAAEIASAAGA---HADSLDRL 58
Query: 69 MRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLHDSELSLAPMILVEN-NQWLLEPWHY 127
+R LV G+F + +Y +T + L D + + + +
Sbjct: 59 LRHLVAVGLFTRD------GQGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVE 112
Query: 128 LSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGFDSI 187
L+ ++ G A+ +G W+ P + F+ M+ ++ + + Y + ++
Sbjct: 113 LAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD--WAAL 170
Query: 188 QSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAP-------VCEGIFHVGGDMFD 240
+ DVGGG+GG L+ ++ ++ + G DL + A + V G FD
Sbjct: 171 GHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFD 230
Query: 241 AIPK-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMG 299
+P A + +LHDWDD + V IL+ C +A G ++++E V ++ G
Sbjct: 231 PLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSG-GVVLVIEAVAGDEH------AG 283
Query: 300 LVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349
DL M + GGKER+ E +L Q G + + SI+E
Sbjct: 284 TGMDLRMLTY-FGGKERSLAELGELAAQAGLAVRAAHPISYV-SIVEMTA 331
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 380 bits (977), Expect = e-132
Identities = 78/358 (21%), Positives = 144/358 (40%), Gaps = 31/358 (8%)
Query: 6 ELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYL 65
+ + M +++A LRL D + T+ LA+R D+ L
Sbjct: 15 PQQIDALRTLIRLGSLHTPMVVRTAATLRLVDHIL--AGARTVKALAARTDT---RPEAL 69
Query: 66 ARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLHDSELSLAPMI-LVENNQWLLEP 124
RL+R LV G+ + T + + L D + L +
Sbjct: 70 LRLIRHLVAIGLLEED------APGEFVPTEVGELLADDHPAAQRAWHDLTQAVARADIS 123
Query: 125 WHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGF 184
+ L ++ G ++ +G ++ + P F+ +AC + A + Y +
Sbjct: 124 FTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAY--DW 181
Query: 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAP-------VCEGIFHVGGD 237
+++ + DVGGG GG A I + PH+ ++ V TA + + + V GD
Sbjct: 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGD 241
Query: 238 MFDAIP-KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFG 296
F+ +P KADA+ + ++L +W D V+IL C +A+ G++++ E + + F
Sbjct: 242 FFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPG-GRILIHERDDLHENS--FN 298
Query: 297 DMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII-----SMPALYSIIEAYP 349
+ DL M GG RT ++W L G ++ ++P S++ P
Sbjct: 299 EQFTELDLRMLVF-LGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 377 bits (971), Expect = e-131
Identities = 83/362 (22%), Positives = 141/362 (38%), Gaps = 28/362 (7%)
Query: 2 EVHEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPD 61
E E + + + + MAL+ A LRL D + TL LA R D+
Sbjct: 8 EPLEPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLL--AGADTLAGLADRTDT---H 62
Query: 62 IPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLHDSELSLAPMILVENN-QW 120
L+RL+R L G+ + T + L + +
Sbjct: 63 PQALSRLVRHLTVVGVL----EGGEKQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSH 118
Query: 121 LLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHY 180
+ L V+ G A+ +G W+ S + F+ M+C + +A Y
Sbjct: 119 ADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAY 178
Query: 181 KDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAP-------VCEGIFH 233
+ +++ + DVGGG GG LA I PH++G +L A + + +
Sbjct: 179 D--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTV 236
Query: 234 VGGDMFDAIPK-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGN 292
GD F +P AD V + ++L +W DE + IL+ C +A+ G+L++++ +G+
Sbjct: 237 AEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPG-GRLLVLDRAD-VEGD 294
Query: 293 NIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII-----SMPALYSIIEA 347
+ DL M GG+ RT E + L G ++P +SI+E
Sbjct: 295 GADRFFSTLLDLRMLTF-MGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEF 353
Query: 348 YP 349
Sbjct: 354 TA 355
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 328 bits (844), Expect = e-112
Identities = 63/358 (17%), Positives = 136/358 (37%), Gaps = 34/358 (9%)
Query: 4 HEELLRGQAEVWQLMFA-FADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDI 62
+ +LL +L+F + +K+A+EL L M P L LA+ S
Sbjct: 24 NNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMA--EGPKDLATLAADTGS---VP 78
Query: 63 PYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQWLL 122
P L L+ L + + + ++ + +T + ++ +
Sbjct: 79 PRLEMLLETLRQMRVINL-------EDGKWSLTEFADYMFSPTPKEPNLHQTPVAKAMAF 131
Query: 123 ---EPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSH 179
+ + LSQ V+ + + + N F + AK ++ L+
Sbjct: 132 LADDFYMGLSQAVRGQKNFK------GQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEE 185
Query: 180 YKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAP-------VCEGIF 232
K D ++ + DVGGG G A ++K +P + +LP + V + +
Sbjct: 186 AK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMR 243
Query: 233 HVGGDMF-DAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDG 291
+ D++ ++ P+ADAV IL+ +++ + K A+ G+L+++++V+ +
Sbjct: 244 GIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSG-GRLLILDMVIDDPE 302
Query: 292 NNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349
N F + + G + + + ++LE G+ ++ + P
Sbjct: 303 NPNFDYLSHYILGAGMPFSVLG-FKEQARYKEILESLGYKDVTMVRKYDHLLVQAVKP 359
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 315 bits (810), Expect = e-107
Identities = 67/349 (19%), Positives = 123/349 (35%), Gaps = 32/349 (9%)
Query: 11 QAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMR 70
A + + A+ S A+K+AVEL + + + LA + + + L
Sbjct: 7 PALFFNTVNAYQRSAAIKAAVELNVFTAISQG--IESSQSLAQKC-QTSERG--MRMLCD 61
Query: 71 MLVRKGIFAVHQSSDGGDETLYKMTHISKWLLH-DSELSLAPMILVENNQWLLEPWHYLS 129
LV G Y++T S L S+ + I + + ++ L+
Sbjct: 62 YLVIIGFMTK-------QAEGYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLT 114
Query: 130 QCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGFDSIQS 189
V +GG A + QF + MA A+++ + +
Sbjct: 115 AAVLKGGTAISSEGT--LSPEHPVWVQFAKAMSPMMANPAQLIAQL----VNENKIEPLK 168
Query: 190 LADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAP-------VCEGIFHVGGDMFDA- 241
+ D+ G + + P+ + D V+ A V + G F+
Sbjct: 169 VLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVD 228
Query: 242 -IPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGL 300
D V + LH +D C ++L+ + A+ + GK+++ + + D
Sbjct: 229 YGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVE-GKVIVFDFIPNSDRIT--PPDAA 285
Query: 301 VFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMP-ALYSIIEAY 348
F LVM A T G T E+ + GF ++ S+P +I AY
Sbjct: 286 AFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVAY 334
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 295 bits (756), Expect = 1e-98
Identities = 59/355 (16%), Positives = 133/355 (37%), Gaps = 39/355 (10%)
Query: 5 EELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPY 64
+ L ++ +L + S L AV +L D+ + T ++A+
Sbjct: 19 KAALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQT---GRTPAEVAASFGMV-EG--K 72
Query: 65 LARLMRMLVRKGIFAVHQSSDGGDETLYKMTHIS-KWLLHDSELSLAPMILVENNQWLLE 123
A L+ L G+ + ++ T ++ ++L S + P++ + QW +
Sbjct: 73 AAILLHALAALGLLTK-------EGDAFRNTALTERYLTTTSADYIGPIVEHQYLQW--D 123
Query: 124 PWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDG 183
W L + ++ K + + + + FNDAM ++ ++ +
Sbjct: 124 NWPRLGEILRSE-----KPLAFQQESRFAHDTRARDAFNDAMVRLSQPMVDVVSELG--V 176
Query: 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAP-------VCEGIFHVGG 236
F +++ D+ GG G LA++++ +P + G +DLP A + +
Sbjct: 177 FARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEK 236
Query: 237 DMFDAIP----KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGN 292
++ DA AD V + LH +D +++ + + G L+++ + + +D
Sbjct: 237 NLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPG-GALLILTMTMNDDRV 295
Query: 293 NIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEA 347
+ F L M +T G+ ++ G + Y+++
Sbjct: 296 T--PALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIG 346
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 294 bits (754), Expect = 3e-98
Identities = 61/364 (16%), Positives = 120/364 (32%), Gaps = 34/364 (9%)
Query: 1 MEVHEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCP 60
+ Q ++ F + ++ + ++ TL +++ R +
Sbjct: 6 TKEQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGLT-- 63
Query: 61 DIPY-LARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQ 119
Y L+ + G + +E Y + +LL+D +A + + N+
Sbjct: 64 --RYAAQVLLEASLTIGTILL-------EEDRYVLAKAGWFLLNDK---MARVNMEFNHD 111
Query: 120 WLLEPWHYLSQCVKEGGIAFKKAHGCE--IWDFASQSP-QFNNLFNDAMACTAKIVMKAL 176
+ +L + + G K G I++ SQ P Q + +
Sbjct: 112 VNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSFGKA 171
Query: 177 VSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAP-------VCE 229
+ + L D+GG TG + V+ ++ DLP + E
Sbjct: 172 LEIV--FSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSE 229
Query: 230 GIFHVGGDMFD---AIPK-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285
I G ++ D P DAV+M L + +E + IL Q+I K+ ++E
Sbjct: 230 RIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKD-SKVYIMET 288
Query: 286 VVQEDGNNIFGDMGLVFDLVMFAHTTG-GKERTEQEWMKLLEQGGFHRCKIISMPAL-YS 343
+ L A G K + ++ +E G +I L +S
Sbjct: 289 LWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHS 348
Query: 344 IIEA 347
I++
Sbjct: 349 ILQC 352
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 4e-06
Identities = 27/147 (18%), Positives = 47/147 (31%), Gaps = 21/147 (14%)
Query: 192 DVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVG----GDMFDAIP---K 244
D G G G ++ + + H++ A VG M A
Sbjct: 99 DCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNT 158
Query: 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDL 304
D + ++W D VK K+C+QA+ I +E N + D
Sbjct: 159 YDLIVIQWTAIYLTDADFVKFFKHCQQAL--TPNG----YIFFKE---NCSTGDRFLVDK 209
Query: 305 VMFAHTTGGKERTEQEWMKLLEQGGFH 331
+ T R++ + +L + G
Sbjct: 210 EDSSLT-----RSDIHYKRLFNESGVR 231
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 8e-05
Identities = 21/152 (13%), Positives = 52/152 (34%), Gaps = 28/152 (18%)
Query: 191 ADVGGGTGGALAEIVKSYP-HIKGINFDLPHVVATA-------PVCEGIFHVGGDMFDAI 242
D G G G ++ + ++ + A + + D
Sbjct: 84 LDCGAGIGRITKRLLLPLFREVDMVDIT-EDFLVQAKTYLGEEGKRVRNYFCC-GLQDFT 141
Query: 243 PKA---DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMG 299
P+ D ++++W++ D+ + L+ C+ ++ G +V+ + + QE G
Sbjct: 142 PEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPN-GIIVIKDNMAQE---------G 191
Query: 300 LVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331
++ D V + R +++ G
Sbjct: 192 VILDDVDSSVC-----RDLDVVRRIICSAGLS 218
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 3e-04
Identities = 45/335 (13%), Positives = 93/335 (27%), Gaps = 104/335 (31%)
Query: 29 SAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGD 88
+ + DI+ + D C D+ + + +L ++ I + S D
Sbjct: 12 GEHQYQYKDIL-----SVFEDAFVDNFD--CKDVQDMPK--SILSKEEIDHIIMSKDA-V 61
Query: 89 ETLYKMTHISKWLLHDSELSLAPMILVE----NNQWLLEPWHYLSQCVKEGGIAFKKAHG 144
++ W L + + + E N ++L+ P + + +
Sbjct: 62 SGTLRLF----WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT--EQRQPSMMTRM---- 111
Query: 145 CEIWDFASQSPQFNNLFNDAMACTAKIVMKA-LVSHYKDGFDSIQSLADVG----GGTG- 198
+ Q + L+ND V + + ++ +V G+G
Sbjct: 112 -----YIEQR---DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 199 GALA-EIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAIPKADAVFMKWIL--H 255
+A ++ SY ++F IF W+ +
Sbjct: 164 TWVALDVCLSYKVQCKMDF-------------KIF-------------------WLNLKN 191
Query: 256 DWDDEACVKILKN-CRQ------AIPDKSGKLVLVEIVVQEDGNNIFGDMG-----LVFD 303
E +++L+ Q + D S + L +Q + + LV
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 304 LVMFAHTTGGKERTEQEW-MKLLEQGGF-HRCKII 336
V K F CKI+
Sbjct: 252 NV---------------QNAKAWN--AFNLSCKIL 269
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 6e-04
Identities = 29/177 (16%), Positives = 51/177 (28%), Gaps = 27/177 (15%)
Query: 188 QSLADVGGGTGG---ALAEIVKSYPHIKGINFDLPHVVATA-------PVCEGIFHVGGD 237
+A V G AL + GI++D P + A + I D
Sbjct: 120 CVVASVPCGWMSELLALDYSACPGVQLVGIDYD-PEALDGATRLAAGHALAGQITLHRQD 178
Query: 238 M--FDAIPKADAVFMKWILHDW-DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNI 294
D D + + DD ++ + QA+ K G ++ + +
Sbjct: 179 AWKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQAL--KPGGALVTSFLTPPPALSP 236
Query: 295 FGDM--------GLVFDLVMFAHTTGGKE---RTEQEWMKLLEQGGFHRCKIISMPA 340
L ++F + RT + LE+ GF + A
Sbjct: 237 DSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDDRA 293
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 350 | |||
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 100.0 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 100.0 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 100.0 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 100.0 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 100.0 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 100.0 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 100.0 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 100.0 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 100.0 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 100.0 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 100.0 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 100.0 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 100.0 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 100.0 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 100.0 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 100.0 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.88 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.84 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.79 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.79 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.79 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.77 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.77 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.77 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.77 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.77 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.76 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.76 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.76 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.75 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.75 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.75 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.75 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.74 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.74 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.74 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.74 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.73 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.73 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.73 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.72 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.72 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.72 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.71 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.71 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.71 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.71 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.71 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.71 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.71 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.7 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.7 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.7 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.69 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.69 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.69 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.68 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.68 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.68 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.67 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.67 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.67 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.66 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.66 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.66 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.66 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.65 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.65 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.64 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.64 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.64 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.63 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.63 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.62 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.62 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.61 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.6 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.6 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.59 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.59 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.58 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.58 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.57 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.57 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.57 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.55 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.54 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.54 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.54 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.54 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.54 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.54 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.53 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.52 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.51 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.5 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.5 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.5 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.48 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.48 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.48 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.47 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.47 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.47 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.47 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.45 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.45 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.44 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.44 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.43 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.43 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.42 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.42 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.42 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.41 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.41 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.4 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.4 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.39 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.39 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.39 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.38 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.38 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.38 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.37 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.37 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.37 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.37 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.37 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.37 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.36 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.36 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.36 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.35 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.35 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.34 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.33 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.33 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.32 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.32 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.32 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.31 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.29 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.29 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.28 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.26 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.26 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.26 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.25 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.25 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.25 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.24 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.24 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.23 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.23 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.23 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.22 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.22 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.21 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.21 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.21 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.21 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.2 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.2 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.2 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.19 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.19 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.19 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.19 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.19 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.18 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.18 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.18 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.17 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.17 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.16 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.16 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.15 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.15 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.13 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.13 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.12 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.12 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.11 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.1 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.1 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.09 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.09 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.08 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.08 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.08 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.06 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.06 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.06 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.05 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.05 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.04 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.04 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.04 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.04 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.04 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.03 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.03 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.03 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.03 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.03 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.02 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.02 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.01 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.01 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.01 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.99 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.98 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.97 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.96 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.96 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.96 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.95 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.95 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.95 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.95 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.94 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.94 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.93 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.9 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.87 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.87 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.87 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.85 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.83 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.82 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.82 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.8 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.8 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.8 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.79 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.77 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.76 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.75 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.74 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.73 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.73 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.7 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.67 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.61 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.59 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.58 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.58 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.57 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.55 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.53 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.53 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.52 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.52 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.51 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.48 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.45 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.44 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.44 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.4 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.39 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.38 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.38 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.37 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.35 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.35 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.35 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.34 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.33 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.33 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.28 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 98.27 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.16 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.14 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.1 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.04 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.01 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.94 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.94 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.93 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.91 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.85 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.81 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.8 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.77 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 97.73 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.72 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.66 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.64 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.51 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.51 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.49 | |
| 2heo_A | 67 | Z-DNA binding protein 1; protein DLM1-Z-DNA comple | 97.45 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.42 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.36 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.33 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.3 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.29 | |
| 3b73_A | 111 | PHIH1 repressor-like protein; winged-helix-turn-he | 97.27 | |
| 1xmk_A | 79 | Double-stranded RNA-specific adenosine deaminase; | 97.18 | |
| 1y0u_A | 96 | Arsenical resistance operon repressor, putative; s | 97.11 | |
| 1qgp_A | 77 | Protein (double stranded RNA adenosine deaminase); | 96.98 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.93 | |
| 1qbj_A | 81 | Protein (double-stranded RNA specific adenosine D | 96.91 | |
| 3mq0_A | 275 | Transcriptional repressor of the blcabc operon; he | 96.83 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 96.81 | |
| 1oyi_A | 82 | Double-stranded RNA-binding protein; (alpha+beta) | 96.8 | |
| 3bdd_A | 142 | Regulatory protein MARR; putative multiple antibio | 96.72 | |
| 3ech_A | 142 | MEXR, multidrug resistance operon repressor; winge | 96.7 | |
| 3pqk_A | 102 | Biofilm growth-associated repressor; helix-turn-he | 96.69 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.66 | |
| 3jth_A | 98 | Transcription activator HLYU; transcription factor | 96.66 | |
| 2jt1_A | 77 | PEFI protein; solution structure, winged helix-tur | 96.63 | |
| 2oqg_A | 114 | Possible transcriptional regulator, ARSR family P; | 96.63 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 96.55 | |
| 1u2w_A | 122 | CADC repressor, cadmium efflux system accessory pr | 96.54 | |
| 2k02_A | 87 | Ferrous iron transport protein C; FEOC, iron-sulfu | 96.51 | |
| 1xn7_A | 78 | Hypothetical protein YHGG; alpha+beta, GFT structu | 96.51 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.5 | |
| 3r4k_A | 260 | Transcriptional regulator, ICLR family; DNA/RNA-bi | 96.46 | |
| 4a5n_A | 131 | Uncharacterized HTH-type transcriptional regulato; | 96.46 | |
| 3cuo_A | 99 | Uncharacterized HTH-type transcriptional regulato; | 96.44 | |
| 2hzt_A | 107 | Putative HTH-type transcriptional regulator YTCD; | 96.43 | |
| 1ub9_A | 100 | Hypothetical protein PH1061; helix-turn-helix moti | 96.43 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 96.42 | |
| 2xrn_A | 241 | HTH-type transcriptional regulator TTGV; DNA-bindi | 96.38 | |
| 2jsc_A | 118 | Transcriptional regulator RV1994C/MT2050; cadmium, | 96.36 | |
| 1mkm_A | 249 | ICLR transcriptional regulator; structural genomic | 96.35 | |
| 1r1u_A | 106 | CZRA, repressor protein; zinc, DNA binding, transc | 96.32 | |
| 1s3j_A | 155 | YUSO protein; structural genomics, MARR transcript | 96.29 | |
| 3fm5_A | 150 | Transcriptional regulator; MCSG, PF04017, PSI, MAR | 96.29 | |
| 2kko_A | 108 | Possible transcriptional regulatory protein (possi | 96.24 | |
| 1r7j_A | 95 | Conserved hypothetical protein SSO10A; winged heli | 96.23 | |
| 2o0y_A | 260 | Transcriptional regulator; ICLR-family, structural | 96.18 | |
| 2htj_A | 81 | P fimbrial regulatory protein KS71A; winged helix- | 96.17 | |
| 2g7u_A | 257 | Transcriptional regulator; ICLR family, structural | 96.16 | |
| 2nyx_A | 168 | Probable transcriptional regulatory protein, RV14; | 96.14 | |
| 3f6v_A | 151 | Possible transcriptional regulator, ARSR family pr | 96.13 | |
| 3g3z_A | 145 | NMB1585, transcriptional regulator, MARR family; t | 96.12 | |
| 3hsr_A | 140 | HTH-type transcriptional regulator SARZ; helix-tur | 96.08 | |
| 1on2_A | 142 | Transcriptional regulator MNTR; helix-turn-helix, | 96.06 | |
| 3df8_A | 111 | Possible HXLR family transcriptional factor; APC89 | 96.01 | |
| 3f6o_A | 118 | Probable transcriptional regulator, ARSR family pr | 95.96 | |
| 2y75_A | 129 | HTH-type transcriptional regulator CYMR; DNA bindi | 95.94 | |
| 2hr3_A | 147 | Probable transcriptional regulator; MCSG, structur | 95.91 | |
| 2ia2_A | 265 | Putative transcriptional regulator; SAD, PSI-2, st | 95.88 | |
| 1z7u_A | 112 | Hypothetical protein EF0647; winged-helix-turn-hel | 95.87 | |
| 2qww_A | 154 | Transcriptional regulator, MARR family; YP_013417. | 95.86 | |
| 3k0l_A | 162 | Repressor protein; helix-turn-helix, structural ge | 95.84 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 95.81 | |
| 2gxg_A | 146 | 146AA long hypothetical transcriptional regulator; | 95.8 | |
| 1r1t_A | 122 | Transcriptional repressor SMTB; zinc, transcriptio | 95.79 | |
| 3k69_A | 162 | Putative transcription regulator; putative transcr | 95.77 | |
| 3e6m_A | 161 | MARR family transcriptional regulator; APC88769, s | 95.75 | |
| 2lnb_A | 80 | Z-DNA-binding protein 1; structural genomics, nort | 95.75 | |
| 1yyv_A | 131 | Putative transcriptional regulator; reductive meth | 95.74 | |
| 2fsw_A | 107 | PG_0823 protein; alpha-beta structure, helix-turn- | 95.72 | |
| 3oop_A | 143 | LIN2960 protein; protein structure initiative, PSI | 95.71 | |
| 2wte_A | 244 | CSA3; antiviral protein, viral resistance, winged | 95.7 | |
| 4hbl_A | 149 | Transcriptional regulator, MARR family; HTH, trans | 95.67 | |
| 3f3x_A | 144 | Transcriptional regulator, MARR family, putative; | 95.64 | |
| 3s2w_A | 159 | Transcriptional regulator, MARR family; structural | 95.62 | |
| 2f2e_A | 146 | PA1607; transcription factor, helix-TRUN-helix, AP | 95.61 | |
| 2bv6_A | 142 | MGRA, HTH-type transcriptional regulator MGRA; mul | 95.58 | |
| 3lwf_A | 159 | LIN1550 protein, putative transcriptional regulato | 95.56 | |
| 2nnn_A | 140 | Probable transcriptional regulator; structural gen | 95.52 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 95.52 | |
| 3bja_A | 139 | Transcriptional regulator, MARR family, putative; | 95.52 | |
| 2fu4_A | 83 | Ferric uptake regulation protein; DNA binding doma | 95.51 | |
| 3cdh_A | 155 | Transcriptional regulator, MARR family; helix-turn | 95.47 | |
| 3t8r_A | 143 | Staphylococcus aureus CYMR; transcriptional regula | 95.45 | |
| 1tbx_A | 99 | ORF F-93, hypothetical 11.0 kDa protein; sulfolobu | 95.44 | |
| 3kp7_A | 151 | Transcriptional regulator TCAR; multiple drug resi | 95.44 | |
| 2rdp_A | 150 | Putative transcriptional regulator MARR; PFAM PF01 | 95.41 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.37 | |
| 2x4h_A | 139 | Hypothetical protein SSO2273; transcription; 2.30A | 95.36 | |
| 3nrv_A | 148 | Putative transcriptional regulator (MARR/EMRR FAM; | 95.28 | |
| 3r0a_A | 123 | Putative transcriptional regulator; structural gen | 95.25 | |
| 3boq_A | 160 | Transcriptional regulator, MARR family; MARR famil | 95.24 | |
| 2fa5_A | 162 | Transcriptional regulator MARR/EMRR family; multip | 95.17 | |
| 3bj6_A | 152 | Transcriptional regulator, MARR family; helix-turn | 95.14 | |
| 3eco_A | 139 | MEPR; mutlidrug efflux pump regulator winged helix | 95.13 | |
| 1ylf_A | 149 | RRF2 family protein; structural genomics, transcri | 95.12 | |
| 3cjn_A | 162 | Transcriptional regulator, MARR family; silicibact | 95.11 | |
| 2fbh_A | 146 | Transcriptional regulator PA3341; MARR, transcript | 95.07 | |
| 1lj9_A | 144 | Transcriptional regulator SLYA; HTH DNA binding pr | 94.97 | |
| 1jgs_A | 138 | Multiple antibiotic resistance protein MARR; trans | 94.92 | |
| 3deu_A | 166 | Transcriptional regulator SLYA; MARR, WING-helix, | 94.91 | |
| 3tgn_A | 146 | ADC operon repressor ADCR; helix-turn-helix, trans | 94.83 | |
| 2eth_A | 154 | Transcriptional regulator, putative, MAR family; M | 94.82 | |
| 3bro_A | 141 | Transcriptional regulator; helix_TURN_helix, multi | 94.79 | |
| 2h09_A | 155 | Transcriptional regulator MNTR; transcription regu | 94.78 | |
| 2pg4_A | 95 | Uncharacterized protein; structural genomics, join | 94.77 | |
| 1xd7_A | 145 | YWNA; structural genomics, protein structure initi | 94.71 | |
| 4aik_A | 151 | Transcriptional regulator SLYA; transcription, tra | 94.69 | |
| 2pex_A | 153 | Transcriptional regulator OHRR; transcription regu | 94.68 | |
| 2lkp_A | 119 | Transcriptional regulator, ARSR family; symmetric | 94.63 | |
| 3hrs_A | 214 | Metalloregulator SCAR; DTXR/MNTR family member, tr | 94.62 | |
| 3bpv_A | 138 | Transcriptional regulator; MARR, DNA binding, tran | 94.59 | |
| 1z91_A | 147 | Organic hydroperoxide resistance transcriptional; | 94.55 | |
| 3jw4_A | 148 | Transcriptional regulator, MARR/EMRR family; DNA-b | 94.53 | |
| 2qvo_A | 95 | Uncharacterized protein AF_1382; PSI, structural g | 94.41 | |
| 2zkz_A | 99 | Transcriptional repressor PAGR; protein-DNA, HTH m | 94.41 | |
| 1sfx_A | 109 | Conserved hypothetical protein AF2008; structural | 94.3 | |
| 2a61_A | 145 | Transcriptional regulator TM0710; APC4350, MCSG, m | 94.27 | |
| 1sfu_A | 75 | 34L protein; protein/Z-DNA complex, DNA binding pr | 94.21 | |
| 1bja_A | 95 | Transcription regulatory protein MOTA; activation | 93.98 | |
| 3u2r_A | 168 | Regulatory protein MARR; structural genomics, PSI- | 93.96 | |
| 2fbk_A | 181 | Transcriptional regulator, MARR family; winged-hel | 93.96 | |
| 2fbi_A | 142 | Probable transcriptional regulator; MARR, APC5816, | 93.92 | |
| 2frh_A | 127 | SARA, staphylococcal accessory regulator A; winged | 93.88 | |
| 2p4w_A | 202 | Transcriptional regulatory protein ARSR family; ar | 93.81 | |
| 3i71_A | 68 | Ethanolamine utilization protein EUTK; helix-turn- | 93.73 | |
| 2o03_A | 131 | Probable zinc uptake regulation protein FURB; DNA- | 93.7 | |
| 2cfx_A | 144 | HTH-type transcriptional regulator LRPC; transcrip | 93.66 | |
| 1p6r_A | 82 | Penicillinase repressor; transcription regulation, | 93.6 | |
| 2xvc_A | 59 | ESCRT-III, SSO0910; cell cycle, cell division, cyt | 93.59 | |
| 3nqo_A | 189 | MARR-family transcriptional regulator; structural | 93.5 | |
| 2w25_A | 150 | Probable transcriptional regulatory protein; trans | 93.5 | |
| 2k4b_A | 99 | Transcriptional regulator; DNA binding protein, wi | 93.46 | |
| 2qlz_A | 232 | Transcription factor PF0095; 2.50A {Pyrococcus fur | 93.44 | |
| 1uly_A | 192 | Hypothetical protein PH1932; helix-turn-helix, str | 93.2 | |
| 2pn6_A | 150 | ST1022, 150AA long hypothetical transcriptional re | 93.13 | |
| 2p5v_A | 162 | Transcriptional regulator, LRP/ASNC family; NMB057 | 93.11 | |
| 1q1h_A | 110 | TFE, transcription factor E, TFE; TFIIE, transcrip | 93.1 | |
| 2dk5_A | 91 | DNA-directed RNA polymerase III 39 kDa polypeptide | 92.82 | |
| 1v4r_A | 102 | Transcriptional repressor; helix-turn-helix, winge | 92.76 | |
| 1okr_A | 123 | MECI, methicillin resistance regulatory protein ME | 92.71 | |
| 2ia0_A | 171 | Putative HTH-type transcriptional regulator PF086; | 92.65 | |
| 2d1h_A | 109 | ST1889, 109AA long hypothetical transcriptional re | 92.57 | |
| 2dbb_A | 151 | Putative HTH-type transcriptional regulator PH006; | 92.5 | |
| 1j5y_A | 187 | Transcriptional regulator, biotin repressor famil; | 92.44 | |
| 2obp_A | 96 | Putative DNA-binding protein; structural genomics, | 92.4 | |
| 2fe3_A | 145 | Peroxide operon regulator; oxidative stress regula | 92.39 | |
| 2cg4_A | 152 | Regulatory protein ASNC; DNA binding, FFRP, LRP fa | 92.34 | |
| 2fxa_A | 207 | Protease production regulatory protein HPR; protea | 92.31 | |
| 3i4p_A | 162 | Transcriptional regulator, ASNC family; PSI, struc | 92.29 | |
| 3u1d_A | 151 | Uncharacterized protein; GNTR-superfamily, structu | 92.24 | |
| 4b8x_A | 147 | SCO5413, possible MARR-transcriptional regulator; | 92.22 | |
| 2esh_A | 118 | Conserved hypothetical protein TM0937; APC5794, st | 92.13 | |
| 2cyy_A | 151 | Putative HTH-type transcriptional regulator PH151; | 92.02 | |
| 2e1c_A | 171 | Putative HTH-type transcriptional regulator PH151; | 91.9 | |
| 3k2z_A | 196 | LEXA repressor; winged helix-turn-helix, SOS syste | 91.82 | |
| 1ku9_A | 152 | Hypothetical protein MJ223; putative transcription | 91.77 | |
| 1i1g_A | 141 | Transcriptional regulator LRPA; helix-turn-helix, | 91.77 | |
| 2xig_A | 150 | Ferric uptake regulation protein; hpfur, transcrip | 91.75 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 91.07 | |
| 1fx7_A | 230 | Iron-dependent repressor IDER; DTXR, iron-dependen | 91.04 | |
| 3mwm_A | 139 | ZUR, putative metal uptake regulation protein; FUR | 90.83 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 90.76 | |
| 4fx0_A | 148 | Probable transcriptional repressor protein; helix- | 90.66 | |
| 1mzb_A | 136 | Ferric uptake regulation protein; ferric uptake re | 90.57 | |
| 2qlz_A | 232 | Transcription factor PF0095; 2.50A {Pyrococcus fur | 90.55 | |
| 4g6q_A | 182 | Putative uncharacterized protein; structural genom | 90.52 | |
| 2g9w_A | 138 | Conserved hypothetical protein; DNA-binding domain | 90.44 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 90.34 | |
| 1p4x_A | 250 | Staphylococcal accessory regulator A homologue; wi | 90.04 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 89.94 | |
| 2vn2_A | 128 | DNAD, chromosome replication initiation protein; D | 89.64 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 89.61 | |
| 3cta_A | 230 | Riboflavin kinase; structural genomics, transferas | 89.59 | |
| 4esf_A | 117 | PADR-like transcriptional regulator; PADR family, | 89.32 | |
| 3elk_A | 117 | Putative transcriptional regulator TA0346; structu | 89.26 | |
| 2o0m_A | 345 | Transcriptional regulator, SORC family; structural | 89.12 | |
| 1sd4_A | 126 | Penicillinase repressor; BLAI, MECI, methicillin, | 89.07 | |
| 2pjp_A | 121 | Selenocysteine-specific elongation factor; SELB, p | 88.72 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 88.65 | |
| 3f8b_A | 116 | Transcriptional regulator, PADR-like family; winge | 88.57 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 88.32 | |
| 2qq9_A | 226 | Diphtheria toxin repressor; regulator, DTXR, helix | 88.28 | |
| 1cf7_A | 76 | Protein (transcription factor E2F-4); E2F, winged- | 88.25 | |
| 2w57_A | 150 | Ferric uptake regulation protein; gene regulation, | 88.13 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 87.93 | |
| 2b0l_A | 102 | GTP-sensing transcriptional pleiotropic repressor; | 87.91 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 87.78 | |
| 1xma_A | 145 | Predicted transcriptional regulator; southea colla | 87.75 | |
| 2p8t_A | 200 | Hypothetical protein PH0730; pyrococcus horikoshii | 87.18 | |
| 1bia_A | 321 | BIRA bifunctional protein; transcription regulatio | 86.73 | |
| 3tqn_A | 113 | Transcriptional regulator, GNTR family; regulatory | 86.72 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 86.62 | |
| 3l7w_A | 108 | Putative uncharacterized protein SMU.1704; PADR, t | 86.42 | |
| 1yg2_A | 179 | Gene activator APHA; virulence factor, winged heli | 86.03 | |
| 2ek5_A | 129 | Predicted transcriptional regulators; helix-turn-h | 86.01 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 86.01 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 85.98 | |
| 3maj_A | 382 | DNA processing chain A; MCSG, PSI-2, structural ge | 85.55 | |
| 1jhg_A | 101 | Trp operon repressor; complex (regulatory protein- | 85.23 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 85.08 | |
| 1hsj_A | 487 | Fusion protein consisting of staphylococcus access | 84.92 | |
| 3rkx_A | 323 | Biotin-[acetyl-COA-carboxylase] ligase; biotin pro | 84.87 | |
| 1p4x_A | 250 | Staphylococcal accessory regulator A homologue; wi | 84.6 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 83.5 | |
| 3hhh_A | 116 | Transcriptional regulator, PADR family; PF03551, s | 83.18 | |
| 3by6_A | 126 | Predicted transcriptional regulator; structural ge | 82.81 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 82.72 | |
| 3eyy_A | 145 | Putative iron uptake regulatory protein; NUR, nick | 82.63 | |
| 2vxz_A | 165 | Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Py | 82.54 | |
| 1z6r_A | 406 | MLC protein; transcriptional repressor, ROK family | 82.48 | |
| 2hoe_A | 380 | N-acetylglucosamine kinase; TM1224, structural gen | 82.24 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 81.94 |
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-57 Score=418.75 Aligned_cols=334 Identities=24% Similarity=0.383 Sum_probs=297.8
Q ss_pred CcchHHhhhHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceee
Q 018775 1 MEVHEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAV 80 (350)
Q Consensus 1 ~~~~~~~~~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 80 (350)
|.++++ ++...|++++.||+.+++|++|+++||||.|.+.++|+|++|||+++|+ ++..++|||++|++.|++++
T Consensus 1 M~~~e~--~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~---~~~~l~rlLr~L~~~gll~~ 75 (353)
T 4a6d_A 1 MGSSED--QAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRA---SAHGTELLLDICVSLKLLKV 75 (353)
T ss_dssp CCTTSC--HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEE
T ss_pred CCChhH--HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCc---CHHHHHHHHHHHHHCCCEEE
Confidence 566554 7888999999999999999999999999999875579999999999999 89999999999999999987
Q ss_pred cccCCCCCCCeEecChhch-hhhcCCCCChHHHHHHhcCchhhhhhhhhhHhHhcCchhhhhhcC---CChhhhhccCcc
Q 018775 81 HQSSDGGDETLYKMTHISK-WLLHDSELSLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHG---CEIWDFASQSPQ 156 (350)
Q Consensus 81 ~~~~~~~~~~~~~~t~~s~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g---~~~~~~~~~~~~ 156 (350)
...++ +++|++|+.+. ++..+++.++..++.+.. ...++.|.+|.++++++.+++...+| .++|+++.++++
T Consensus 76 ~~~~~---~~~y~~t~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~ 151 (353)
T 4a6d_A 76 ETRGG---KAFYRNTELSSDYLTTVSPTSQCSMLKYMG-RTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEG 151 (353)
T ss_dssp EEETT---EEEEEECHHHHHHHSTTSTTCCHHHHHHHH-HTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHH
T ss_pred eccCc---cceeeCCHHHHHHhhcCCchHHHHHHHHhC-HHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHH
Confidence 54210 35799999887 677778888888887763 45788999999999999888888777 368999999999
Q ss_pred hHHHHHHHHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC------CCC
Q 018775 157 FNNLFNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV------CEG 230 (350)
Q Consensus 157 ~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ 230 (350)
....|.++|..........+++.++ +.+..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+|
T Consensus 152 ~~~~f~~aM~~~~~~~~~~~~~~~~--~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~r 229 (353)
T 4a6d_A 152 ERLQFMQALQEVWSVNGRSVLTAFD--LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQ 229 (353)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHSSC--GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC--cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCc
Confidence 9999999999988888888999998 78889999999999999999999999999999999999887653 589
Q ss_pred eEEEeccCCC-CCCCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhh
Q 018775 231 IFHVGGDMFD-AIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAH 309 (350)
Q Consensus 231 i~~~~~d~~~-~~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (350)
|+++.+|+++ +.|++|+|++.++||+|+|+++.++|++++++|+ |||+|+|+|.+.++....+ .....+|+.|+..
T Consensus 230 v~~~~gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~-pgg~lli~e~~~~~~~~~~--~~~~~~dl~ml~~ 306 (353)
T 4a6d_A 230 IDFQEGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCK-PGGGILVIESLLDEDRRGP--LLTQLYSLNMLVQ 306 (353)
T ss_dssp EEEEESCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCC-TTCEEEEEECCCCTTSCCC--HHHHHHHHHHHHS
T ss_pred eeeecCccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCC-CCCEEEEEEeeeCCCCCCC--HHHHHHHHHHHHh
Confidence 9999999998 5677999999999999999999999999999999 9999999999998765442 2446789999988
Q ss_pred cCCcccCCHHHHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 310 TTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 310 ~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
++ |++||.+||+++|+++||+.+++++.++.+++|+|+|
T Consensus 307 ~~-g~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 307 TE-GQERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp SS-CCCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred CC-CcCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 87 9999999999999999999999999999999999998
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-53 Score=393.88 Aligned_cols=344 Identities=35% Similarity=0.630 Sum_probs=298.0
Q ss_pred hHHhhhHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCC-CCCCHHHHHhhcCC--CCCCcccHHHHHHHhhcCCceee
Q 018775 4 HEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHG-SPITLPQLASRIDS--SCPDIPYLARLMRMLVRKGIFAV 80 (350)
Q Consensus 4 ~~~~~~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~-~~~t~~ela~~~~~--~~~~~~~l~~~L~~L~~~g~l~~ 80 (350)
..+..+++..+++++.|++.+++|++|+++||||.|.+.+ +|+|++|||+++|+ +|..+..++||||+|++.|+|++
T Consensus 14 ~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~ 93 (364)
T 3p9c_A 14 ASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTC 93 (364)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEE
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEE
Confidence 4567889999999999999999999999999999998753 59999999999997 44334499999999999999999
Q ss_pred cccCC-CC-CCCeEecChhchhhhcCC-CCChHHHHHHhcCchhhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcch
Q 018775 81 HQSSD-GG-DETLYKMTHISKWLLHDS-ELSLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQF 157 (350)
Q Consensus 81 ~~~~~-~~-~~~~~~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~ 157 (350)
+..++ .+ .+++|++|+.+++|..++ +.++++++.+..++.+++.|.+|.++++++.+|++..+|.++|+|+.++++.
T Consensus 94 ~~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~~~~~~ 173 (364)
T 3p9c_A 94 LVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRF 173 (364)
T ss_dssp EEEECSSSCEEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHTTCHHH
T ss_pred eccccCCCCcCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHHhCHHH
Confidence 72100 00 026899999999887654 5689988887666678899999999999998999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCCCCeEEEecc
Q 018775 158 NNLFNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGD 237 (350)
Q Consensus 158 ~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d 237 (350)
.+.|+++|..........+++.++ .+.+..+|||||||+|.++..+++++|+++++++|+|++++.+++..+|+++.+|
T Consensus 174 ~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D 252 (364)
T 3p9c_A 174 NRVFNEGMKNHSIIITKKLLELYH-GFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGD 252 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECC
T ss_pred HHHHHHHHHHhhHHHHHHHHHhcc-cccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCC
Confidence 999999999888877788888886 3567899999999999999999999999999999999999999988899999999
Q ss_pred CCCCCCCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcc-cccchhhhhhHhhhcCCcccC
Q 018775 238 MFDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIF-GDMGLVFDLVMFAHTTGGKER 316 (350)
Q Consensus 238 ~~~~~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 316 (350)
+++++|..|+|++.++||+|+++++.++|++++++|+ |||+|+|.|.+.++...... ......+++.|+....+++.|
T Consensus 253 ~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~r 331 (364)
T 3p9c_A 253 MFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALP-AHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRER 331 (364)
T ss_dssp TTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSC-TTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred cCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcC-CCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccC
Confidence 9997776799999999999999999999999999999 99999999999877544311 112245788887543338999
Q ss_pred CHHHHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 317 TEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 317 s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
+.++|.++|+++||+.++++++++..++|+++|
T Consensus 332 t~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 332 YEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp BHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 999999999999999999999999999999997
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-52 Score=386.45 Aligned_cols=343 Identities=37% Similarity=0.669 Sum_probs=295.3
Q ss_pred HhhhHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhC---CCCCCHHHHHhhcC-CCCCCcccHHHHHHHhhcCCceeec
Q 018775 6 ELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSH---GSPITLPQLASRID-SSCPDIPYLARLMRMLVRKGIFAVH 81 (350)
Q Consensus 6 ~~~~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~---~~~~t~~ela~~~~-~~~~~~~~l~~~L~~L~~~g~l~~~ 81 (350)
+..+.+..+++++.|++.+++|++|+++||||.|.+. ++|+|++|||+++| .+|.++..++||||+|++.|+|++.
T Consensus 17 ~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 96 (368)
T 3reo_A 17 SDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYT 96 (368)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEEe
Confidence 5778899999999999999999999999999999873 24799999999998 4333345999999999999999996
Q ss_pred ccCC-CCC-CCeEecChhchhhhcCC-CCChHHHHHHhcCchhhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchH
Q 018775 82 QSSD-GGD-ETLYKMTHISKWLLHDS-ELSLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFN 158 (350)
Q Consensus 82 ~~~~-~~~-~~~~~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 158 (350)
.... .+. +++|++|+.++.|..++ +.++++++.+..++.+++.|.+|.++++++.+|++..+|.++|+|+.++++..
T Consensus 97 ~~~~~~g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~ 176 (368)
T 3reo_A 97 LRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRIN 176 (368)
T ss_dssp EEECTTSCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHHHHTTCHHHH
T ss_pred cccCCCCcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHHHHhhCHHHH
Confidence 2000 000 16899999999777553 67899888877666788899999999999989999999999999999999999
Q ss_pred HHHHHHHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCCCCeEEEeccC
Q 018775 159 NLFNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDM 238 (350)
Q Consensus 159 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~ 238 (350)
+.|.++|..........+++.++ .+.+..+|||||||+|.++..+++++|+++++++|+|++++.+++..+|+++.+|+
T Consensus 177 ~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~ 255 (368)
T 3reo_A 177 KVFNKGMSSNSTITMKKILEMYN-GFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDM 255 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCT
T ss_pred HHHHHHHHhhhhhHHHHHHHhcc-cccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCC
Confidence 99999999888877788888776 25678999999999999999999999999999999999999998888999999999
Q ss_pred CCCCCCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCc-ccccchhhhhhHhhhcCCcccCC
Q 018775 239 FDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNI-FGDMGLVFDLVMFAHTTGGKERT 317 (350)
Q Consensus 239 ~~~~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s 317 (350)
++++|..|+|++.++||+|+++++.++|++++++|+ |||+|+|.|.+.++....+ .......+++.|+....+++.|+
T Consensus 256 ~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt 334 (368)
T 3reo_A 256 FDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALP-DHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERT 334 (368)
T ss_dssp TTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSC-TTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCC
T ss_pred CCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcC-CCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCC
Confidence 997776799999999999999999999999999999 9999999999987754432 11123467787876543389999
Q ss_pred HHHHHHHHHhcCCceeEEEEcCCceeEEEEeeC
Q 018775 318 EQEWMKLLEQGGFHRCKIISMPALYSIIEAYPQ 350 (350)
Q Consensus 318 ~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~~ 350 (350)
.++|.++|+++||+.+++++.++..++|+++|.
T Consensus 335 ~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k~ 367 (368)
T 3reo_A 335 EKEFQALAMASGFRGFKVASCAFNTYVMEFLKT 367 (368)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEeC
Confidence 999999999999999999999999999999984
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-52 Score=382.26 Aligned_cols=326 Identities=25% Similarity=0.434 Sum_probs=292.8
Q ss_pred HhhhHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCC
Q 018775 6 ELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSD 85 (350)
Q Consensus 6 ~~~~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 85 (350)
...++...+++++.|++.+++|++++++||||.|.+ +|+|++|||+++|+ +++.++|||++|++.|+|++ +
T Consensus 18 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~g~---~~~~l~rlLr~l~~~g~l~~-~--- 88 (348)
T 3lst_A 18 DRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD--GPRTPAELAAATGT---DADALRRVLRLLAVRDVVRE-S--- 88 (348)
T ss_dssp CHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT--SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEE-E---
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCCEEe-c---
Confidence 456788899999999999999999999999999986 79999999999999 89999999999999999999 4
Q ss_pred CCCCCeEecChhchhhhcCCCCChHHHHHHhcCchhhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHHHH
Q 018775 86 GGDETLYKMTHISKWLLHDSELSLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAM 165 (350)
Q Consensus 86 ~~~~~~~~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 165 (350)
+++|++|+.+..+.++++.++..++.+..+...++.|.+|+++++++.++++..+|.++|+++.++++....|.+.|
T Consensus 89 ---~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m 165 (348)
T 3lst_A 89 ---DGRFALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGM 165 (348)
T ss_dssp ---TTEEEECTTTGGGSTTSSSCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHHHHHHH
T ss_pred ---CCEEecCHHHHHHhcCCCccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHHHHHHH
Confidence 58999999999888777778888887765665789999999999999888998899999999999999999999999
Q ss_pred hhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-----CCCeEEEeccCCC
Q 018775 166 ACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-----CEGIFHVGGDMFD 240 (350)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~i~~~~~d~~~ 240 (350)
..........+++.++ +.+..+|||||||+|.++..+++++|+.+++++|+++++...+. .++|+++.+|+++
T Consensus 166 ~~~~~~~~~~~~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 243 (348)
T 3lst_A 166 ETVSAAEHLILARAGD--FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLR 243 (348)
T ss_dssp HHHHHTTHHHHHHHSC--CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTT
T ss_pred HHhhhhhHHHHHHhCC--ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCC
Confidence 9988888888999998 78899999999999999999999999999999999877763321 5689999999998
Q ss_pred CCCCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHH
Q 018775 241 AIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQE 320 (350)
Q Consensus 241 ~~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e 320 (350)
++|+||+|++.++||+|+++++.++|++++++|+ |||+|+|.|...++.... .....+++.++...+ ++.++.++
T Consensus 244 ~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lk-pgG~l~i~e~~~~~~~~~---~~~~~~d~~~~~~~~-~~~~t~~e 318 (348)
T 3lst_A 244 EVPHADVHVLKRILHNWGDEDSVRILTNCRRVMP-AHGRVLVIDAVVPEGNDA---HQSKEMDFMMLAART-GQERTAAE 318 (348)
T ss_dssp CCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCC-TTCEEEEEECCBCSSSSC---CHHHHHHHHHHHTTS-CCCCBHHH
T ss_pred CCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcC-CCCEEEEEEeccCCCCCc---chhhhcChhhhhcCC-CcCCCHHH
Confidence 7779999999999999999999999999999999 999999999988776432 234567788877666 89999999
Q ss_pred HHHHHHhcCCceeEEEEcCCceeEEEEeeC
Q 018775 321 WMKLLEQGGFHRCKIISMPALYSIIEAYPQ 350 (350)
Q Consensus 321 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~~~ 350 (350)
|.++|+++||+++++++.++..++|+++|.
T Consensus 319 ~~~ll~~aGf~~~~~~~~~~~~~vie~~pa 348 (348)
T 3lst_A 319 LEPLFTAAGLRLDRVVGTSSVMSIAVGVPA 348 (348)
T ss_dssp HHHHHHHTTEEEEEEEECSSSCEEEEEEEC
T ss_pred HHHHHHHCCCceEEEEECCCCcEEEEEEeC
Confidence 999999999999999997788999999984
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-51 Score=378.48 Aligned_cols=324 Identities=26% Similarity=0.487 Sum_probs=293.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCC
Q 018775 8 LRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGG 87 (350)
Q Consensus 8 ~~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~ 87 (350)
.....++++++.|++.+++|++++++||||.|.+ +|+|++|||+++|+ +++.++|||++|++.|++++.+
T Consensus 36 ~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~--g~~t~~eLA~~~g~---~~~~l~rlLr~L~~~g~l~~~~----- 105 (369)
T 3gwz_A 36 AAAEETVNDILQGAWKARAIHVAVELGVPELLQE--GPRTATALAEATGA---HEQTLRRLLRLLATVGVFDDLG----- 105 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSSEECS-----
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCCEEEeC-----
Confidence 3667889999999999999999999999999986 79999999999999 8999999999999999999976
Q ss_pred CCCe-EecChhchhhhcCCCCChHHHHHHhcCchhhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHHHHh
Q 018775 88 DETL-YKMTHISKWLLHDSELSLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMA 166 (350)
Q Consensus 88 ~~~~-~~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~ 166 (350)
+++ |.+|+.++.|.++++.++..++.+..++..++.|.+|.++++++.++|...+|.++|+|+.++++....|.+.|.
T Consensus 106 -~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 184 (369)
T 3gwz_A 106 -HDDLFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMG 184 (369)
T ss_dssp -STTEEECCHHHHTTSCCTTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHH
T ss_pred -CCceEecCHHHHHHhcCCchhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHHHHHHHH
Confidence 578 999999998887777778888887666556789999999999999889988999999999999999999999999
Q ss_pred hhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCC
Q 018775 167 CTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMF 239 (350)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~ 239 (350)
.........+++.++ +.+..+|||||||+|.++..+++++|+.+++++|++.+++.+++ .++|+++.+|++
T Consensus 185 ~~~~~~~~~l~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~ 262 (369)
T 3gwz_A 185 SVSLTEAGQVAAAYD--FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFF 262 (369)
T ss_dssp HHHHHHHHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHHhhhHHHHHHhCC--CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCC
Confidence 888887888999888 77889999999999999999999999999999999888887764 478999999999
Q ss_pred CCCC-CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCH
Q 018775 240 DAIP-KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTE 318 (350)
Q Consensus 240 ~~~p-~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 318 (350)
+++| .||+|++.++||+|+++++.++|++++++|+ |||+|+|.|.+.++.... . ...+++.|+...+ ++.++.
T Consensus 263 ~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~-pgG~l~i~e~~~~~~~~~---~-~~~~d~~~~~~~~-g~~~t~ 336 (369)
T 3gwz_A 263 ETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMK-PDSRLLVIDNLIDERPAA---S-TLFVDLLLLVLVG-GAERSE 336 (369)
T ss_dssp TCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCC-TTCEEEEEEEBCCSSCCH---H-HHHHHHHHHHHHS-CCCBCH
T ss_pred CCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcC-CCCEEEEEEeccCCCCCC---c-hhHhhHHHHhhcC-CccCCH
Confidence 8777 6999999999999999999999999999999 999999999998776432 1 4567888877766 899999
Q ss_pred HHHHHHHHhcCCceeEEEE-cCCceeEEEEeeC
Q 018775 319 QEWMKLLEQGGFHRCKIIS-MPALYSIIEAYPQ 350 (350)
Q Consensus 319 ~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~~ 350 (350)
++|.++|+++||+++++++ .++..++|+++|.
T Consensus 337 ~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~a 369 (369)
T 3gwz_A 337 SEFAALLEKSGLRVERSLPCGAGPVRIVEIRRA 369 (369)
T ss_dssp HHHHHHHHTTTEEEEEEEECSSSSEEEEEEEEC
T ss_pred HHHHHHHHHCCCeEEEEEECCCCCcEEEEEEeC
Confidence 9999999999999999999 5788999999983
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-51 Score=377.50 Aligned_cols=342 Identities=38% Similarity=0.680 Sum_probs=296.6
Q ss_pred hHHhhhHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeec--
Q 018775 4 HEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVH-- 81 (350)
Q Consensus 4 ~~~~~~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~-- 81 (350)
+++++++...+++++.|++.+++|++++++|||+.|...++|+|++|||+++|++|.+++.++|||++|++.|+|.+.
T Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~~~ 83 (358)
T 1zg3_A 4 ESELYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKTIV 83 (358)
T ss_dssp TSCCTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEecc
Confidence 467889999999999999999999999999999999873349999999999999766788999999999999999987
Q ss_pred ---ccCCCCCCCeEecChhchhhhcCCCCChHHHHHHhcCchhhhhhhhhhHhHhcC--chhhhhhcCCChhhhhccCcc
Q 018775 82 ---QSSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQWLLEPWHYLSQCVKEG--GIAFKKAHGCEIWDFASQSPQ 156 (350)
Q Consensus 82 ---~~~~~~~~~~~~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~~~~~~~~g~~~~~~~~~~~~ 156 (350)
+.++ ..+++|++|+.+++|.++++.++++++.+..++..++.|.+|+++++++ .++|+..+|.++|+++.++|+
T Consensus 84 ~~~~~~g-~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~ 162 (358)
T 1zg3_A 84 KGKEGDE-EEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSE 162 (358)
T ss_dssp CCSSSSC-CCEEEEEECHHHHTTCTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGG
T ss_pred cccccCC-CCCCEEeCCHHHHHHhCCCCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChh
Confidence 2000 0026899999999998888778999988876666788999999999998 688888889999999999999
Q ss_pred hHH--HHHHHHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCCCCeEEE
Q 018775 157 FNN--LFNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHV 234 (350)
Q Consensus 157 ~~~--~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~ 234 (350)
... .|+..|........ .+++.+++.+.+..+|||||||+|.++..+++++|+++++++|++.+++.+++..+++++
T Consensus 163 ~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~ 241 (358)
T 1zg3_A 163 SSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFV 241 (358)
T ss_dssp HHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEE
T ss_pred hhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEE
Confidence 999 99999988777665 777777212567789999999999999999999999999999999999998876679999
Q ss_pred eccCCCCCCCccEEEecchhccCChHHHHHHHHHHHhhCCCC---CceEEEEeeeecCCCCCc-ccccchhhhhhHhhhc
Q 018775 235 GGDMFDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDK---SGKLVLVEIVVQEDGNNI-FGDMGLVFDLVMFAHT 310 (350)
Q Consensus 235 ~~d~~~~~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~p---gG~lli~e~~~~~~~~~~-~~~~~~~~~~~~~~~~ 310 (350)
.+|+++++|.||+|++.++||+|+++++.++|++++++|+ | ||+|+|.|...++....+ .......+++.|+...
T Consensus 242 ~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~-p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 320 (358)
T 1zg3_A 242 GGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAIS-HKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMF 320 (358)
T ss_dssp ECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTG-GGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred eCccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCC-CCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccC
Confidence 9999998778999999999999999999999999999999 9 999999999987654321 0113456777777655
Q ss_pred CCcccCCHHHHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 311 TGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 311 ~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
+ ++.++.++|.++|+++||+++++++.++..++|+++|
T Consensus 321 ~-g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 321 L-GKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp S-CCCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred C-CCCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 5 8899999999999999999999999988899999987
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-50 Score=376.04 Aligned_cols=337 Identities=37% Similarity=0.691 Sum_probs=295.6
Q ss_pred chHHhhhHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeec-
Q 018775 3 VHEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVH- 81 (350)
Q Consensus 3 ~~~~~~~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~- 81 (350)
.++++.++...+++++.|++.+++|++++++|||+.|...++|+|++|||+++|++|.+++.++|||++|++.|+|++.
T Consensus 9 ~~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~~ 88 (352)
T 1fp2_A 9 KPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIIT 88 (352)
T ss_dssp CSTHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEec
Confidence 4568899999999999999999999999999999999864359999999999999665688999999999999999998
Q ss_pred -ccCCCCCCCeEecChhchhhhcCCCCChHHHHHHhcCchhhhhhhhhhHhHh-cCchhhhhhcCCChhhhhccCcchHH
Q 018775 82 -QSSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQWLLEPWHYLSQCVK-EGGIAFKKAHGCEIWDFASQSPQFNN 159 (350)
Q Consensus 82 -~~~~~~~~~~~~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~~~~~~g~~~~~~~~~~~~~~~ 159 (350)
+ +++|++|+.+.+|.++++.++++++.+..++..++.|.+|+++++ ++.++++..+|.++|+++.++++...
T Consensus 89 ~~------~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 162 (352)
T 1fp2_A 89 KE------EESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNT 162 (352)
T ss_dssp SS------SEEEEECHHHHTTSTTSSSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHH
T ss_pred CC------CCeEeCCHHHHHHhCCCCccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHHH
Confidence 3 489999999999988887789999887766667889999999999 78888988889999999999999999
Q ss_pred HHHHHHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCCCCeEEEeccCC
Q 018775 160 LFNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMF 239 (350)
Q Consensus 160 ~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~ 239 (350)
.|...|.......... ++.+++.+.+..+|||||||+|.++..+++++|+.+++++|++.+++.+++..+++++.+|++
T Consensus 163 ~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~ 241 (352)
T 1fp2_A 163 SFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMF 241 (352)
T ss_dssp HHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTT
T ss_pred HHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEecccc
Confidence 9999999877766666 777721266789999999999999999999999999999999999999987667999999999
Q ss_pred CCCCCccEEEecchhccCChHHHHHHHHHHHhhCCCC---CceEEEEeeeecCCCCCc-ccccchhhhhhHhhhcCCccc
Q 018775 240 DAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDK---SGKLVLVEIVVQEDGNNI-FGDMGLVFDLVMFAHTTGGKE 315 (350)
Q Consensus 240 ~~~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~p---gG~lli~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 315 (350)
+++|+||+|++.++||||+++++.++|++++++|+ | ||+|+|.|...++....+ .......+++.|+. .+ ++.
T Consensus 242 ~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~-p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~-g~~ 318 (352)
T 1fp2_A 242 TSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVT-NDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-LN-GKE 318 (352)
T ss_dssp TCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHS-GGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-GT-CCC
T ss_pred CCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCC-CCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-cc-CCC
Confidence 88778999999999999999999999999999999 9 999999999987654321 01123456776766 55 788
Q ss_pred CCHHHHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 316 RTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 316 ~s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
++.++|.++|+++||+++++++.++..++|+++|
T Consensus 319 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 319 RNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp EEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 9999999999999999999999888889999987
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-51 Score=374.86 Aligned_cols=319 Identities=25% Similarity=0.392 Sum_probs=283.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCC
Q 018775 10 GQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDE 89 (350)
Q Consensus 10 ~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~ 89 (350)
+...+++++.|++.+++|++++++||||.|.+ +|+|++|||+++|+ +++.++|||++|++.|++.+++ +
T Consensus 5 ~~~~l~~~~~g~~~~~~l~~a~~lglf~~l~~--g~~t~~elA~~~~~---~~~~l~rlLr~l~~~gl~~~~~------~ 73 (332)
T 3i53_A 5 AAHIGLRALADLATPMAVRVAATLRVADHIAA--GHRTAAEIASAAGA---HADSLDRLLRHLVAVGLFTRDG------Q 73 (332)
T ss_dssp CCSSCHHHHTCCHHHHHHHHHHHHTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT------T
T ss_pred cHHHHHHHHHhhHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCcEEecC------C
Confidence 34568899999999999999999999999986 79999999999999 8999999999999999999986 5
Q ss_pred CeEecChhchhhhcCCCCChHHHHHHhcCchhh-hhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHHHHhhh
Q 018775 90 TLYKMTHISKWLLHDSELSLAPMILVENNQWLL-EPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACT 168 (350)
Q Consensus 90 ~~~~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~ 168 (350)
++|.+|+.++.+..+++.++..++.+..+...+ +.|.+|+++++++.++|...+|.++|+++.++++....|...|...
T Consensus 74 ~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~ 153 (332)
T 3i53_A 74 GVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHH 153 (332)
T ss_dssp SBEEECTTGGGGSTTCTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CeEEcCHhHHHHhcCCchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHh
Confidence 899999999988777777788888765433345 7899999999999988988899899999999999999999999988
Q ss_pred hhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCCC
Q 018775 169 AKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFDA 241 (350)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~~ 241 (350)
.......+++.++ +.+..+|||||||+|.++..+++++|+.+++++|+|.+++.+++ .++|+++.+|++++
T Consensus 154 ~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 231 (332)
T 3i53_A 154 LELDYTGIAAKYD--WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDP 231 (332)
T ss_dssp HHHHHTTGGGSSC--CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred HHhhHHHHHHhCC--CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCC
Confidence 7766677777777 67789999999999999999999999999999999988887764 47899999999987
Q ss_pred CC-CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHH
Q 018775 242 IP-KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQE 320 (350)
Q Consensus 242 ~p-~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e 320 (350)
+| +||+|++.++||+|+++++.++|++++++|+ |||+|+|.|...++. . ....+++.|+...+ ++.++.++
T Consensus 232 ~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~-~-----~~~~~d~~~~~~~~-~~~~t~~e 303 (332)
T 3i53_A 232 LPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAG-SGGVVLVIEAVAGDE-H-----AGTGMDLRMLTYFG-GKERSLAE 303 (332)
T ss_dssp CCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHT-TTCEEEEEECCCC---------CCHHHHHHHHHHHS-CCCCCHHH
T ss_pred CCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcC-CCCEEEEEeecCCCC-C-----ccHHHHHHHHhhCC-CCCCCHHH
Confidence 77 6999999999999999999999999999999 999999999988775 2 12467888877766 89999999
Q ss_pred HHHHHHhcCCceeEEEEcCCceeEEEEeeC
Q 018775 321 WMKLLEQGGFHRCKIISMPALYSIIEAYPQ 350 (350)
Q Consensus 321 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~~~ 350 (350)
|.++|+++||+++++++.++ .++|+++|.
T Consensus 304 ~~~ll~~aGf~~~~~~~~~~-~~vie~r~~ 332 (332)
T 3i53_A 304 LGELAAQAGLAVRAAHPISY-VSIVEMTAL 332 (332)
T ss_dssp HHHHHHHTTEEEEEEEECSS-SEEEEEEEC
T ss_pred HHHHHHHCCCEEEEEEECCC-cEEEEEeeC
Confidence 99999999999999999988 999999974
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-49 Score=364.56 Aligned_cols=319 Identities=27% Similarity=0.445 Sum_probs=286.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCC
Q 018775 9 RGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGD 88 (350)
Q Consensus 9 ~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~ 88 (350)
.+...+++++.|++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|++.+.+
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~--~~~t~~ela~~~~~---~~~~l~r~Lr~L~~~g~l~~~~------ 75 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES--GIDSDETLAAAVGS---DAERIHRLMRLLVAFEIFQGDT------ 75 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhCCceEecC------
Confidence 677899999999999999999999999999976 79999999999999 8999999999999999999986
Q ss_pred CCeEecChhchhhhcCCCCChHHHHHHhcCchhhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHHHHhhh
Q 018775 89 ETLYKMTHISKWLLHDSELSLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACT 168 (350)
Q Consensus 89 ~~~~~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~ 168 (350)
++.|++|+.+..+. +++.++..++.+..+... +.|.+|+++++++.++++..+|.++|+++.++++....|...| ..
T Consensus 76 ~~~y~~t~~s~~l~-~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~ 152 (334)
T 2ip2_A 76 RDGYANTPTSHLLR-DVEGSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KA 152 (334)
T ss_dssp TTEEEECHHHHTTS-SSTTCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GG
T ss_pred CCeEecCHHHHHHh-CCCccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHHH-HH
Confidence 58999999999888 777788888887765544 8999999999999889988889999999999999999999999 87
Q ss_pred hhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCCC
Q 018775 169 AKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFDA 241 (350)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~~ 241 (350)
.......+++.++ +.+ .+|||||||+|.++..+++++|+.+++++|++.+++.+++ .++|+++.+|++++
T Consensus 153 ~~~~~~~~~~~~~--~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 229 (334)
T 2ip2_A 153 SNLAFHEIPRLLD--FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQE 229 (334)
T ss_dssp GHHHHHHHHHHSC--CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTC
T ss_pred HHHHHHHHHHhCC--CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCC
Confidence 7777788888887 666 9999999999999999999999999999999888877764 46899999999987
Q ss_pred CCC-ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHH
Q 018775 242 IPK-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQE 320 (350)
Q Consensus 242 ~p~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e 320 (350)
+|. ||+|++.+++|+|+++++..+|++++++|+ |||+++|.|...++.... .....+++.|+...+ ++.++.++
T Consensus 230 ~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~t~~e 304 (334)
T 2ip2_A 230 VPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMA-GDGRVVVIERTISASEPS---PMSVLWDVHLFMACA-GRHRTTEE 304 (334)
T ss_dssp CCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSC-TTCEEEEEECCBCSSSCC---HHHHHHHHHHHHHHS-CCCCBHHH
T ss_pred CCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcC-CCCEEEEEEeccCCCCCc---chhHHhhhHhHhhCC-CcCCCHHH
Confidence 665 999999999999999999999999999999 999999999988765432 234567777776666 88999999
Q ss_pred HHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 321 WMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 321 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
|.++++++||+++++++.++..++|+++|
T Consensus 305 ~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 305 VVDLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp HHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred HHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 99999999999999999988899999997
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-49 Score=369.28 Aligned_cols=340 Identities=31% Similarity=0.583 Sum_probs=278.9
Q ss_pred hHHhhhHHHHHH--HHHHhHHHHHHHHHHHhcChhhhhhhCCC-C---CCHHHHHhhcCC---CCCCcccHHHHHHHhhc
Q 018775 4 HEELLRGQAEVW--QLMFAFADSMALKSAVELRLADIMHSHGS-P---ITLPQLASRIDS---SCPDIPYLARLMRMLVR 74 (350)
Q Consensus 4 ~~~~~~~~~~l~--~~~~g~~~~~~l~~~~~lglfd~L~~~~~-~---~t~~ela~~~~~---~~~~~~~l~~~L~~L~~ 74 (350)
.++.++++..++ +++.|++.+++|++++++|||+.|.+. + | +|++|||+++|+ +|.+++.++|||++|++
T Consensus 16 ~~~~~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~-g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~ 94 (372)
T 1fp1_D 16 TSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKA-TPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLAS 94 (372)
T ss_dssp ---CCHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTC-SSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhc-CCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhh
Confidence 456778889999 999999999999999999999999864 3 6 999999999999 76678999999999999
Q ss_pred CCceeec----ccCCCCCCCeEecChhchhhhcCCC-CChHHHHHHhcCchhhhhhhhhhHhHhcC-chhhhhhcCCChh
Q 018775 75 KGIFAVH----QSSDGGDETLYKMTHISKWLLHDSE-LSLAPMILVENNQWLLEPWHYLSQCVKEG-GIAFKKAHGCEIW 148 (350)
Q Consensus 75 ~g~l~~~----~~~~~~~~~~~~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~~-~~~~~~~~g~~~~ 148 (350)
.|+|++. +. + ..+++|++|+.+.+|.++++ .++++++.+..++.+++.|.+|+++++++ .+|++..+|.++|
T Consensus 95 ~gll~~~~~~~~~-g-~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~ 172 (372)
T 1fp1_D 95 YSVLTSTTRTIED-G-GAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKY 172 (372)
T ss_dssp TTSEEEEEEECTT-S-CEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC-------------
T ss_pred CCceEecccccCC-C-CcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHH
Confidence 9999987 20 0 00158999999998888876 67888888776666788999999999998 7889888898999
Q ss_pred hhhccCcchHHHHHHHHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCC
Q 018775 149 DFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVC 228 (350)
Q Consensus 149 ~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~ 228 (350)
+++.++++....|+..|..........+++.++ .+.+..+|||||||+|.++..+++++|+++++++|++.+++.+++.
T Consensus 173 ~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~ 251 (372)
T 1fp1_D 173 EFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPL 251 (372)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCC
T ss_pred HHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhh-ccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhc
Confidence 999999999999999998887777778888875 3567899999999999999999999999999999999999999876
Q ss_pred CCeEEEeccCCCCCCCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcc-cccchhhhhhHh
Q 018775 229 EGIFHVGGDMFDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIF-GDMGLVFDLVMF 307 (350)
Q Consensus 229 ~~i~~~~~d~~~~~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~-~~~~~~~~~~~~ 307 (350)
.+++++.+|+++++|.||+|++.++||||+++++..+|++++++|+ |||+|+|.|...++....+. ......+++.|+
T Consensus 252 ~~v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~ 330 (372)
T 1fp1_D 252 SGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALS-PNGKVIIVEFILPEEPNTSEESKLVSTLDNLMF 330 (372)
T ss_dssp TTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHH
T ss_pred CCCEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcC-CCCEEEEEEeccCCCCccchHHHHHHHhhHHHH
Confidence 7899999999997777999999999999999999999999999999 99999999999877543211 002345677666
Q ss_pred hhcCCcccCCHHHHHHHHHhcCCceeEEEEc-CCceeEEEEee
Q 018775 308 AHTTGGKERTEQEWMKLLEQGGFHRCKIISM-PALYSIIEAYP 349 (350)
Q Consensus 308 ~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~~ 349 (350)
...+ ++.++.++|.++|+++||+++++++. ++..+||+++|
T Consensus 331 ~~~~-~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 331 ITVG-GRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp HHHS-CCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred hccC-CccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 5445 78899999999999999999999984 55359999987
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-47 Score=355.14 Aligned_cols=327 Identities=17% Similarity=0.188 Sum_probs=265.4
Q ss_pred chHHhhhHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 3 VHEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 3 ~~~~~~~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+.++++++..+++++.|++.+++|++++++||||.|.+.++|+|++|||+++|+ +++.++|||++|++.|+|++++
T Consensus 8 ~~~~~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~---~~~~l~rlLr~l~~~g~l~~~~ 84 (363)
T 3dp7_A 8 EQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKREGYTLQEISGRTGL---TRYAAQVLLEASLTIGTILLEE 84 (363)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCBCHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEET
T ss_pred CchhHHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcCCCCCHHHHHHHhCc---CHHHHHHHHHHHhhCCCeEecC
Confidence 3567888999999999999999999999999999999874479999999999999 8999999999999999998864
Q ss_pred cCCCCCCCeEecChhchhhhcCCCCChHHHHHHhcCchhhhhhhhhhHhHhcCchhhhhhcC--CChhhhhccCcchHHH
Q 018775 83 SSDGGDETLYKMTHISKWLLHDSELSLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHG--CEIWDFASQSPQFNNL 160 (350)
Q Consensus 83 ~~~~~~~~~~~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g--~~~~~~~~~~~~~~~~ 160 (350)
++|++|+.+.+|.++++. ..++.+. ....++.|.+|+++++++.+++...+| .++|+++.++++....
T Consensus 85 -------~~y~~t~~s~~L~~~~~~--~~~~~~~-~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 154 (363)
T 3dp7_A 85 -------DRYVLAKAGWFLLNDKMA--RVNMEFN-HDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQK 154 (363)
T ss_dssp -------TEEEECHHHHHHHHCHHH--HHHHHHH-HHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHHH
T ss_pred -------CEEecccchHHhhCCCcc--cchheee-cHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHHH
Confidence 899999999988876632 2223332 345788999999999999877777787 5899999999886653
Q ss_pred ----HHHHHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CC
Q 018775 161 ----FNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CE 229 (350)
Q Consensus 161 ----~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~ 229 (350)
|+..|.... ...+++.+. ..+..+|||||||+|.++..+++++|+.+++++|+|.+++.+++ .+
T Consensus 155 ~~~~f~~~~~~~~---~~~~l~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~ 229 (363)
T 3dp7_A 155 SWFGFDHFYSDQS---FGKALEIVF--SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSE 229 (363)
T ss_dssp HHHHHHHHTTCCC---CHHHHHHHG--GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGG
T ss_pred HHHHHHHHhhhhh---HHHHHHHhc--ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCccc
Confidence 555554332 123344443 35678999999999999999999999999999999988887764 35
Q ss_pred CeEEEeccCCCC---CC-CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCccc--ccchhhh
Q 018775 230 GIFHVGGDMFDA---IP-KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFG--DMGLVFD 303 (350)
Q Consensus 230 ~i~~~~~d~~~~---~p-~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~--~~~~~~~ 303 (350)
+|+++.+|++++ +| +||+|++.++||+|+++++.++|++++++|+ |||+|+|.|.+.++....... ......+
T Consensus 230 ~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~ 308 (363)
T 3dp7_A 230 RIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIG-KDSKVYIMETLWDRQRYETASYCLTQISLY 308 (363)
T ss_dssp GEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCC-TTCEEEEEECCTTSCSSHHHHHHHHHHHHH
T ss_pred ceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcC-CCcEEEEEeeccCCccccchhhHHHHhhhh
Confidence 899999999984 66 5999999999999999999999999999999 999999999888765432100 0001122
Q ss_pred hhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcC-CceeEEEEee
Q 018775 304 LVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMP-ALYSIIEAYP 349 (350)
Q Consensus 304 ~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 349 (350)
+.++...+ ++.++.++|.++|+++||+++++++.. ...++|+++|
T Consensus 309 ~~~~~~~~-~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 309 FTAMANGN-SKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp HHHSSCSS-CCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred HHhhhCCC-CcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 22333333 778899999999999999999999764 4589999987
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-46 Score=349.53 Aligned_cols=326 Identities=24% Similarity=0.394 Sum_probs=280.8
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCC
Q 018775 7 LLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDG 86 (350)
Q Consensus 7 ~~~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~ 86 (350)
..+....+++++.|++.+++|++++++|||+.|.. +|+|++|||+++|+ +++.++|||++|++.|++.+.+
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~eLA~~~g~---~~~~l~r~Lr~L~~~Gll~~~~---- 83 (374)
T 1qzz_A 13 TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDT---HPQALSRLVRHLTVVGVLEGGE---- 83 (374)
T ss_dssp CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEECCC----
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHhhCCCEEEeC----
Confidence 34567789999999999999999999999999975 79999999999999 8999999999999999999965
Q ss_pred CCCC--eEecChhchhhhcCCCCChHHHHHHhcCchhh-hhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHH
Q 018775 87 GDET--LYKMTHISKWLLHDSELSLAPMILVENNQWLL-EPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFND 163 (350)
Q Consensus 87 ~~~~--~~~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 163 (350)
++ .|++|+.+.++.++++.++..++.+..+...+ ..|.+|.+.++++.+++...+|.++|++...+++....|..
T Consensus 84 --~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~ 161 (374)
T 1qzz_A 84 --KQGRPLRPTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDA 161 (374)
T ss_dssp --C-CCCCEECTTGGGGSTTCTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHH
T ss_pred --CCCeEEEEChHHHhhcCCCcccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHHHHH
Confidence 46 89999999999888877888888766433455 78999999999998888888899999999999999999999
Q ss_pred HHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEec
Q 018775 164 AMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGG 236 (350)
Q Consensus 164 ~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~ 236 (350)
.|..........+++.++ +.+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ .++|+++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~--~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~ 239 (374)
T 1qzz_A 162 LMSCDEDLAYEAPADAYD--WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEG 239 (374)
T ss_dssp TCGGGSTTTTHHHHHTSC--CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred HHHHhhHhHHHHHHHhCC--CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeC
Confidence 998777766778888887 77889999999999999999999999999999999888887764 358999999
Q ss_pred cCCCCCCC-ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee--eecCCCCCcccccchhhhhhHhhhcCCc
Q 018775 237 DMFDAIPK-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI--VVQEDGNNIFGDMGLVFDLVMFAHTTGG 313 (350)
Q Consensus 237 d~~~~~p~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (350)
|+++++|. ||+|++.+++|+|+++++..+|++++++|+ |||+++|.|. ..++.... .....+++.++...+ +
T Consensus 240 d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~---~~~~~~~~~~~~~~~-~ 314 (374)
T 1qzz_A 240 DFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALE-PGGRLLVLDRADVEGDGADR---FFSTLLDLRMLTFMG-G 314 (374)
T ss_dssp CTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEECCH-------H---HHHHHHHHHHHHHHS-C
T ss_pred CCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcC-CCcEEEEEechhhcCCCCCc---chhhhcchHHHHhCC-C
Confidence 99986665 999999999999999988899999999999 9999999998 76543221 123456777766566 8
Q ss_pred ccCCHHHHHHHHHhcCCceeEEEEcCCce-----eEEEEeeC
Q 018775 314 KERTEQEWMKLLEQGGFHRCKIISMPALY-----SIIEAYPQ 350 (350)
Q Consensus 314 ~~~s~~e~~~ll~~aGf~~~~~~~~~~~~-----~vi~~~~~ 350 (350)
+.++.++|.++|+++||+++++.+.++.. ++|+++|.
T Consensus 315 ~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~~ 356 (374)
T 1qzz_A 315 RVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTAV 356 (374)
T ss_dssp CCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEEC
T ss_pred cCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEEC
Confidence 89999999999999999999999988777 99999873
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-46 Score=344.37 Aligned_cols=323 Identities=24% Similarity=0.424 Sum_probs=282.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCC
Q 018775 10 GQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDE 89 (350)
Q Consensus 10 ~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~ 89 (350)
...++++++.|++.+++|.+++++|||+.|.+ +|.|++|||+++|+ ++..++|+|++|++.|+|.+.+ +
T Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~---~~~~l~r~L~~L~~~g~~~~~~------~ 87 (360)
T 1tw3_A 19 DALRTLIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDT---RPEALLRLIRHLVAIGLLEEDA------P 87 (360)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE------T
T ss_pred chHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEecC------C
Confidence 36788999999999999999999999999975 79999999999999 8999999999999999999976 5
Q ss_pred CeEecChhchhhhcCCCCChHHHHHHhcCch-hhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHHHHhhh
Q 018775 90 TLYKMTHISKWLLHDSELSLAPMILVENNQW-LLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACT 168 (350)
Q Consensus 90 ~~~~~t~~s~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~ 168 (350)
++|++|+.+.++.++++.++..++.+..... .+..|.+|.+.++++.++++..+|.++|++...+++....|...|...
T Consensus 88 g~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~ 167 (360)
T 1tw3_A 88 GEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACD 167 (360)
T ss_dssp TEEEECTTGGGGSTTSTTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTT
T ss_pred CeEEeCHHHHHHhcCCchhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHHHHHHH
Confidence 8999999999999888778888876654333 567899999999999888888889999999998999999999999887
Q ss_pred hhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCCC
Q 018775 169 AKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFDA 241 (350)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~~ 241 (350)
.......+++.++ +.+..+|||||||+|.++..+++.+|+++++++|++.+++.+++ .++++++.+|++++
T Consensus 168 ~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 245 (360)
T 1tw3_A 168 QDVAFDAPAAAYD--WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEP 245 (360)
T ss_dssp TTTTTHHHHHHSC--CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred HHHhHHHHHHhCC--CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCC
Confidence 7777778888888 77889999999999999999999999999999999888877654 35899999999986
Q ss_pred CCC-ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeee-ecCCCCCcccccchhhhhhHhhhcCCcccCCHH
Q 018775 242 IPK-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV-VQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQ 319 (350)
Q Consensus 242 ~p~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 319 (350)
+|. ||+|++.+++|+|+++++..+|++++++|+ |||++++.|.. .++.... .....+++.++...+ ++.++.+
T Consensus 246 ~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~t~~ 320 (360)
T 1tw3_A 246 LPRKADAIILSFVLLNWPDHDAVRILTRCAEALE-PGGRILIHERDDLHENSFN---EQFTELDLRMLVFLG-GALRTRE 320 (360)
T ss_dssp CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEE-EEEEEEEEECCBCGGGCCS---HHHHHHHHHHHHHHS-CCCCBHH
T ss_pred CCCCccEEEEcccccCCCHHHHHHHHHHHHHhcC-CCcEEEEEEEeccCCCCCc---chhhhccHHHhhhcC-CcCCCHH
Confidence 665 999999999999999998999999999999 99999999988 6544321 123456777766555 8899999
Q ss_pred HHHHHHHhcCCceeEEEEcCCc-----eeEEEEeeC
Q 018775 320 EWMKLLEQGGFHRCKIISMPAL-----YSIIEAYPQ 350 (350)
Q Consensus 320 e~~~ll~~aGf~~~~~~~~~~~-----~~vi~~~~~ 350 (350)
+|.++|+++||+++++.+.++. .++|+++|.
T Consensus 321 e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 321 KWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp HHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEEC
T ss_pred HHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEeC
Confidence 9999999999999999988765 789999873
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-45 Score=334.37 Aligned_cols=316 Identities=20% Similarity=0.250 Sum_probs=275.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCC
Q 018775 11 QAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDET 90 (350)
Q Consensus 11 ~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~ 90 (350)
...+++++.|++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|+|+++ ++
T Consensus 7 ~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~--~~~t~~ela~~~~~---~~~~l~r~L~~L~~~g~l~~~-------~~ 74 (335)
T 2r3s_A 7 PALFFNTVNAYQRSAAIKAAVELNVFTAISQ--GIESSQSLAQKCQT---SERGMRMLCDYLVIIGFMTKQ-------AE 74 (335)
T ss_dssp SHHHHHHHTTHHHHHHHHHHHHTTHHHHHTT--SEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE-------TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHhCC---CchHHHHHHHHHHhcCCeEec-------CC
Confidence 3679999999999999999999999999996 79999999999999 899999999999999999985 48
Q ss_pred eEecChhc-hhhhcCCCCChHHHHHHhcCchhhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHHHHhhhh
Q 018775 91 LYKMTHIS-KWLLHDSELSLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTA 169 (350)
Q Consensus 91 ~~~~t~~s-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~ 169 (350)
+|++|+.+ .++.++++.+++.++.+..++..++.|.+|+++++++.++++ . |+++.++++....|...|....
T Consensus 75 ~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~ 148 (335)
T 2r3s_A 75 GYRLTSDSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAKAMSPMM 148 (335)
T ss_dssp EEEECHHHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHHHSGGGG
T ss_pred EEecCHHHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHHHHHHHH
Confidence 99999999 688887777888888877554578899999999999876554 2 7888888888899999998887
Q ss_pred hhhHHHHHHhcccCC--CCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCC
Q 018775 170 KIVMKALVSHYKDGF--DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFD 240 (350)
Q Consensus 170 ~~~~~~~~~~~~~~~--~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~ 240 (350)
......+++.++ . .+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++ .++++++.+|+++
T Consensus 149 ~~~~~~~~~~~~--~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 226 (335)
T 2r3s_A 149 ANPAQLIAQLVN--ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFE 226 (335)
T ss_dssp HHHHHHHHHHHT--C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTT
T ss_pred hhhHHHHHHhcc--cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEeccccc
Confidence 777778888888 5 7889999999999999999999999999999999888877764 3579999999998
Q ss_pred -CCCC-ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCH
Q 018775 241 -AIPK-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTE 318 (350)
Q Consensus 241 -~~p~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 318 (350)
+.++ ||+|++.+++|+|+++++.++|++++++|+ |||++++.|...++....+ .....+++.|+...++++.++.
T Consensus 227 ~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~t~ 303 (335)
T 2r3s_A 227 VDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALA-VEGKVIVFDFIPNSDRITP--PDAAAFSLVMLATTPNGDAYTF 303 (335)
T ss_dssp SCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEECCCCTTSSCS--HHHHHHHHHHHHHSSSCCCCCH
T ss_pred CCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCC-CCcEEEEEeecCCCCcCCc--hHHHHHHHHHHeeCCCCCcCCH
Confidence 6665 999999999999999999999999999999 9999999998887643321 2345667777776634889999
Q ss_pred HHHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 319 QEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 319 ~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
++|.++++++||+.+++++.++..++|++++
T Consensus 304 ~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 334 (335)
T 2r3s_A 304 AEYESMFSNAGFSHSQLHSLPTTQQQVIVAY 334 (335)
T ss_dssp HHHHHHHHHTTCSEEEEECCTTSSSEEEEEE
T ss_pred HHHHHHHHHCCCCeeeEEECCCCceeEEEec
Confidence 9999999999999999999988888888864
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=335.01 Aligned_cols=314 Identities=19% Similarity=0.317 Sum_probs=269.8
Q ss_pred hHHhhhHHHHHHHHHH-hHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 4 HEELLRGQAEVWQLMF-AFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 4 ~~~~~~~~~~l~~~~~-g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+++.++..++++++. |++.+++|++++++|||+.|.+ +|.|++|||+++|+ +++.++|||++|++.|+|++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~--~~~t~~eLA~~~g~---~~~~l~rlLr~L~~~gll~~~~ 98 (359)
T 1x19_A 24 NNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE--GPKDLATLAADTGS---VPPRLEMLLETLRQMRVINLED 98 (359)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred ccccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC--CCCCHHHHHHHhCc---ChHHHHHHHHHHHhCCCeEeeC
Confidence 4567888899999996 9999999999999999999986 79999999999999 8999999999999999999986
Q ss_pred cCCCCCCCeEecChh-chhhhcCCC---CChHHHHHHhcCchhhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcc--
Q 018775 83 SSDGGDETLYKMTHI-SKWLLHDSE---LSLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQ-- 156 (350)
Q Consensus 83 ~~~~~~~~~~~~t~~-s~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~-- 156 (350)
++|++|+. +.++.++++ .++++++.+. ....++.|.+|+++++++.+ |+++.++++
T Consensus 99 -------~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~----------~~~~~~~p~~~ 160 (359)
T 1x19_A 99 -------GKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN----------FKGQVPYPPVT 160 (359)
T ss_dssp -------TEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC----------CCCSSCSSCCS
T ss_pred -------CeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC----------CcccccCchhh
Confidence 69999996 458887777 6888888765 34578899999999998753 667777888
Q ss_pred -hHHHHHHHHhhhhh-hhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------
Q 018775 157 -FNNLFNDAMACTAK-IVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV------- 227 (350)
Q Consensus 157 -~~~~~~~~m~~~~~-~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------- 227 (350)
....|...|..... .....+++.++ +.+..+|||||||+|.++..+++++|+.+++++|++.+++.+++
T Consensus 161 ~~~~~f~~~m~~~~~~~~~~~l~~~~~--~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~ 238 (359)
T 1x19_A 161 REDNLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGV 238 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHCC--CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccchhHHHHHHhcC--CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCC
Confidence 88899999998877 77788888888 77889999999999999999999999999999999888887763
Q ss_pred CCCeEEEeccCCC-CCCCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhH
Q 018775 228 CEGIFHVGGDMFD-AIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVM 306 (350)
Q Consensus 228 ~~~i~~~~~d~~~-~~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~ 306 (350)
.++++++.+|+++ +++++|+|++.+++|+|+++++.++|++++++|+ |||+++|.|...++... + .....+ .+
T Consensus 239 ~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~-~--~~~~~~--~~ 312 (359)
T 1x19_A 239 ADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMR-SGGRLLILDMVIDDPEN-P--NFDYLS--HY 312 (359)
T ss_dssp TTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCC-TTCEEEEEEECCCCTTS-C--CHHHHH--HH
T ss_pred CCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcC-CCCEEEEEecccCCCCC-c--hHHHHH--HH
Confidence 4679999999998 6777899999999999999989999999999999 99999999998876521 1 112222 33
Q ss_pred hhhcCCccc----CCHHHHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 307 FAHTTGGKE----RTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 307 ~~~~~~~~~----~s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
+...++++. ++.++|.++|+++||+++++.+.+ ..++|+++|
T Consensus 313 ~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 313 ILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp GGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred HHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 332332566 899999999999999999999988 788999987
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-44 Score=331.72 Aligned_cols=314 Identities=18% Similarity=0.280 Sum_probs=263.0
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCC
Q 018775 7 LLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDG 86 (350)
Q Consensus 7 ~~~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~ 86 (350)
.++....+++++.|++.+++|++++++|||+.|. +|+|++|||+++|+ +++.++|||++|++.|++++++
T Consensus 21 ~l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~---~~~t~~elA~~~~~---~~~~l~rlLr~L~~~gll~~~~---- 90 (352)
T 3mcz_A 21 ALTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQ---TGRTPAEVAASFGM---VEGKAAILLHALAALGLLTKEG---- 90 (352)
T ss_dssp CCCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTT---SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET----
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhC---CCCCHHHHHHHhCc---ChHHHHHHHHHHHHCCCeEecC----
Confidence 3444555999999999999999999999999997 49999999999999 8999999999999999999986
Q ss_pred CCCCeEecChhch-hhhcCCCCChHHHHHHhcCchhhhhhhhhhHhHhcCchh-hhhhcCCChhhhhccCcchHHHHHHH
Q 018775 87 GDETLYKMTHISK-WLLHDSELSLAPMILVENNQWLLEPWHYLSQCVKEGGIA-FKKAHGCEIWDFASQSPQFNNLFNDA 164 (350)
Q Consensus 87 ~~~~~~~~t~~s~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~ 164 (350)
++|.+|+.+. ++.++++.+++.++.+. ...++.|.+|+++++++.+. |+.. .++..+++....|..+
T Consensus 91 ---~~y~~t~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~------~~~~~~~~~~~~f~~~ 159 (352)
T 3mcz_A 91 ---DAFRNTALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQE------SRFAHDTRARDAFNDA 159 (352)
T ss_dssp ---TEEEECHHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHH------HHTTTCHHHHHHHHHH
T ss_pred ---CeeecCHHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccc------cccccCHHHHHHHHHH
Confidence 7899999997 66677777888887654 34678999999999988632 2221 2345678888889999
Q ss_pred HhhhhhhhHHHHHHhcccCCCC-cceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEec
Q 018775 165 MACTAKIVMKALVSHYKDGFDS-IQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGG 236 (350)
Q Consensus 165 m~~~~~~~~~~~~~~~~~~~~~-~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~ 236 (350)
|...... ...+++.++ +.+ ..+|||||||+|.++..+++++|+.+++++|++++++.+++ .++++++.+
T Consensus 160 m~~~~~~-~~~~l~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~ 236 (352)
T 3mcz_A 160 MVRLSQP-MVDVVSELG--VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEK 236 (352)
T ss_dssp HHHHHHH-HHHHHHTCG--GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEEC
T ss_pred HHhhhhh-HHHHHHhCC--CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeC
Confidence 8873332 346788888 556 89999999999999999999999999999999888877654 368999999
Q ss_pred cCCC-C--CCC-ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCC
Q 018775 237 DMFD-A--IPK-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTG 312 (350)
Q Consensus 237 d~~~-~--~p~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (350)
|+++ + .+. ||+|++.++||+|+++++..+|++++++|+ |||+|+|.|...++....+ .....+++.|+....+
T Consensus 237 d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~--~~~~~~~~~~~~~~~~ 313 (352)
T 3mcz_A 237 NLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVK-PGGALLILTMTMNDDRVTP--ALSADFSLHMMVNTNH 313 (352)
T ss_dssp CTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEE-EEEEEEEEEECCCTTSSSS--HHHHHHHHHHHHHSTT
T ss_pred CcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcC-CCCEEEEEEeccCCCCCCC--chHHHhhHHHHhhCCC
Confidence 9998 4 554 999999999999999999999999999999 9999999999988765432 2345678888766645
Q ss_pred cccCCHHHHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 313 GKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 313 ~~~~s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
++.++.++|.++|+++||++++.. .+...++.++|
T Consensus 314 ~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 314 GELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp CCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred CCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEec
Confidence 889999999999999999999843 35588888887
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-22 Score=177.40 Aligned_cols=165 Identities=18% Similarity=0.163 Sum_probs=124.0
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC--CCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCCCccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY--PHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIPKADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p~~D~i~~~~ 252 (350)
.+++.+|||||||+|.++..+++++ |+++++++|+ +.+++.|++ ..+|+++++|+.+ ++++||+|++.+
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 3678999999999999999999975 6789999999 899988764 4689999999998 788899999999
Q ss_pred hhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcC-------------CcccCCHH
Q 018775 253 ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTT-------------GGKERTEQ 319 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~s~~ 319 (350)
+||++++++...+|++++++|+ |||+|++.|..................++....... .-...+.+
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~Lk-pGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~~ 226 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLN-PGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVE 226 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCHH
T ss_pred eeeecCchhHhHHHHHHHHHcC-CCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCHH
Confidence 9999999888899999999999 999999999877654321000000000110000000 01235789
Q ss_pred HHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 320 EWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 320 e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
++.++|+++||+.++++--...+..+.|+|
T Consensus 227 ~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K 256 (261)
T 4gek_A 227 THKARLHKAGFEHSELWFQCFNFGSLVALK 256 (261)
T ss_dssp HHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence 999999999999999865333445556666
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-20 Score=162.27 Aligned_cols=165 Identities=17% Similarity=0.194 Sum_probs=126.8
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCC-CccEEEecchhcc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIP-KADAVFMKWILHD 256 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh~ 256 (350)
..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++||
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 121 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHH 121 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGG
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCcccc
Confidence 35678999999999999999999999999999999 888877654 3489999999998 554 5999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh---------H---hhhcCCcccCCHHHHHHH
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV---------M---FAHTTGGKERTEQEWMKL 324 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~---------~---~~~~~~~~~~s~~e~~~l 324 (350)
+++++...+|++++++|+ |||++++.+...+............+.... . .........++.+++.++
T Consensus 122 ~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 200 (234)
T 3dtn_A 122 LEDEDKKELYKRSYSILK-ESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNW 200 (234)
T ss_dssp SCHHHHHHHHHHHHHHEE-EEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcC-CCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHH
Confidence 999888889999999999 999999999877654211000000000000 0 000111345688999999
Q ss_pred HHhcCCceeEEEEcCCceeEEEEee
Q 018775 325 LEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 325 l~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
|+++||+.++++.....++++...|
T Consensus 201 l~~aGF~~v~~~~~~~~~~~~~~~~ 225 (234)
T 3dtn_A 201 LKEAGFRDVSCIYKYYQFAVMFGRK 225 (234)
T ss_dssp HHHTTCEEEEEEEEETTEEEEEEEC
T ss_pred HHHcCCCceeeeeeecceeEEEEEe
Confidence 9999999999988877788777765
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-19 Score=155.58 Aligned_cols=161 Identities=12% Similarity=0.068 Sum_probs=118.1
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC--CccEEEecchhcc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP--KADAVFMKWILHD 256 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~ 256 (350)
++.+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++|+
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 478999999999999999999876 8999999 888887764 3789999999988 554 4999999999877
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhh---cC-----------------CcccC
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAH---TT-----------------GGKER 316 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----------------~~~~~ 316 (350)
+..++...++++++++|+ |||++++.+...+.................+... .. +...+
T Consensus 116 ~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 194 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLK-PSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVW 194 (227)
T ss_dssp CCHHHHHHHHHHHHHHEE-EEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-----CCEEEEECC
T ss_pred CCHHHHHHHHHHHHHHcC-CCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEeccchhhheeehhhh
Confidence 777788899999999999 9999999887543221100000000000000000 00 00111
Q ss_pred CHHHHHHHHHhcCCceeEEEEcCCceeEEEEeeC
Q 018775 317 TEQEWMKLLEQGGFHRCKIISMPALYSIIEAYPQ 350 (350)
Q Consensus 317 s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~~ 350 (350)
+ .+|.++|+++||+.+++..++...++|+.+|.
T Consensus 195 ~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~~ 227 (227)
T 1ve3_A 195 G-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNPK 227 (227)
T ss_dssp C-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEEC
T ss_pred c-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCCC
Confidence 2 48999999999999999999888889999884
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-18 Score=148.24 Aligned_cols=163 Identities=15% Similarity=0.216 Sum_probs=122.2
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--CCCeEEEeccCCC-CCC-CccEEEe
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--CEGIFHVGGDMFD-AIP-KADAVFM 250 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~~p-~~D~i~~ 250 (350)
+++.+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++
T Consensus 37 ~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 112 (220)
T 3hnr_A 37 ILEDVV--NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS 112 (220)
T ss_dssp HHHHHH--HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred HHHHhh--ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence 344444 456789999999999999999987 678999999 888887765 2489999999998 554 5999999
Q ss_pred cchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh--------HhhhcCCcccCCHHHHH
Q 018775 251 KWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV--------MFAHTTGGKERTEQEWM 322 (350)
Q Consensus 251 ~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~~e~~ 322 (350)
..++||+++++...+|++++++|+ |||.+++.+......... ....... ...... ...++.++|.
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 185 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLN-KGGKIVFADTIFADQDAY-----DKTVEAAKQRGFHQLANDLQT-EYYTRIPVMQ 185 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSC-TTCEEEEEEECBSSHHHH-----HHHHHHHHHTTCHHHHHHHHH-SCCCBHHHHH
T ss_pred CcchhcCChHHHHHHHHHHHHhcC-CCCEEEEEeccccChHHH-----HHHHHHHHhCCCccchhhcch-hhcCCHHHHH
Confidence 999999999887789999999999 999999998665442211 0000000 000000 1334789999
Q ss_pred HHHHhcCCceeEEEEcCCceeEEEEeeC
Q 018775 323 KLLEQGGFHRCKIISMPALYSIIEAYPQ 350 (350)
Q Consensus 323 ~ll~~aGf~~~~~~~~~~~~~vi~~~~~ 350 (350)
++|+++||+++.+. .....+++.+.|.
T Consensus 186 ~~l~~aGf~v~~~~-~~~~~w~~~~~~~ 212 (220)
T 3hnr_A 186 TIFENNGFHVTFTR-LNHFVWVMEATKQ 212 (220)
T ss_dssp HHHHHTTEEEEEEE-CSSSEEEEEEEEC
T ss_pred HHHHHCCCEEEEee-ccceEEEEeehhh
Confidence 99999999866554 4577888888763
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=149.58 Aligned_cols=155 Identities=17% Similarity=0.220 Sum_probs=126.4
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC-
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP- 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p- 243 (350)
..+++.++ ..++.+|||||||+|.++..+++.+ |..+++++|. +.+++.+++ ..+++++.+|+.+ +++
T Consensus 27 ~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 27 EKVLKEFG--LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHHT--CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred HHHHHHhC--CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence 34555555 6778899999999999999999986 8889999999 888887764 2479999999988 554
Q ss_pred -CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH
Q 018775 244 -KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM 322 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~ 322 (350)
.||+|++..++||+++. ..+|++++++|+ |||++++.+.........+ .....++.++|.
T Consensus 105 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~~~ 165 (219)
T 3dh0_A 105 NTVDFIFMAFTFHELSEP--LKFLEELKRVAK-PFAYLAIIDWKKEERDKGP----------------PPEEVYSEWEVG 165 (219)
T ss_dssp SCEEEEEEESCGGGCSSH--HHHHHHHHHHEE-EEEEEEEEEECSSCCSSSC----------------CGGGSCCHHHHH
T ss_pred CCeeEEEeehhhhhcCCH--HHHHHHHHHHhC-CCeEEEEEEecccccccCC----------------chhcccCHHHHH
Confidence 39999999999998764 578999999999 9999999987665542210 002345789999
Q ss_pred HHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 323 KLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 323 ~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
++++++||+++++...+.....+.++|
T Consensus 166 ~~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 166 LILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp HHHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred HHHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 999999999999999888777777776
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.8e-18 Score=144.65 Aligned_cols=161 Identities=18% Similarity=0.145 Sum_probs=113.9
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--CCCeEEEeccCCCCCC--CccEEEecchhccCC
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--CEGIFHVGGDMFDAIP--KADAVFMKWILHDWD 258 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~~~p--~~D~i~~~~vlh~~~ 258 (350)
..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++..++||++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~ 121 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLAHVP 121 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEEESCGGGSC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEEechhhcCC
Confidence 456679999999999999999998 568999999 888888775 3689999999988533 499999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCC------cccCCHHHHHHHHHhcCCce
Q 018775 259 DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTG------GKERTEQEWMKLLEQGGFHR 332 (350)
Q Consensus 259 ~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~s~~e~~~ll~~aGf~~ 332 (350)
+++...+|++++++|+ |||++++.+...+......... .............+ ....+.++|.++++++||++
T Consensus 122 ~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v 199 (218)
T 3ou2_A 122 DDRFEAFWESVRSAVA-PGGVVEFVDVTDHERRLEQQDD-SEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSC 199 (218)
T ss_dssp HHHHHHHHHHHHHHEE-EEEEEEEEEECCCC-------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHHHcC-CCeEEEEEeCCCCccccchhhh-cccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEE
Confidence 9888899999999999 9999999987764322110000 00000000000010 12358999999999999995
Q ss_pred eEEEEcCCceeEEEEee
Q 018775 333 CKIISMPALYSIIEAYP 349 (350)
Q Consensus 333 ~~~~~~~~~~~vi~~~~ 349 (350)
.. ......+....++|
T Consensus 200 ~~-~~~~~~~~~~~~~~ 215 (218)
T 3ou2_A 200 SV-DEVHPGFLYATCRP 215 (218)
T ss_dssp EE-EEEETTEEEEEEEE
T ss_pred Ee-eeccccceEeecCC
Confidence 54 44443333333433
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.2e-18 Score=151.26 Aligned_cols=155 Identities=18% Similarity=0.287 Sum_probs=123.1
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCC--Cc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIP--KA 245 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p--~~ 245 (350)
..+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .|
T Consensus 45 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 45 KKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 44555665 6778899999999999999999987 679999999 888887764 2689999999998 665 49
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHH
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLL 325 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll 325 (350)
|+|++..++||+++++...+|++++++|+ |||++++.+...+..... ...+...... .+ ...++.++|.+++
T Consensus 122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~-----~~~~~~~~~~-~~-~~~~~~~~~~~~l 193 (266)
T 3ujc_A 122 DLIYSRDAILALSLENKNKLFQKCYKWLK-PTGTLLITDYCATEKENW-----DDEFKEYVKQ-RK-YTLITVEEYADIL 193 (266)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEEESCGGGC-----CHHHHHHHHH-HT-CCCCCHHHHHHHH
T ss_pred EEEeHHHHHHhcChHHHHHHHHHHHHHcC-CCCEEEEEEeccCCcccc-----hHHHHHHHhc-CC-CCCCCHHHHHHHH
Confidence 99999999999988888999999999999 999999999877652211 1111111111 12 3466899999999
Q ss_pred HhcCCceeEEEEcC
Q 018775 326 EQGGFHRCKIISMP 339 (350)
Q Consensus 326 ~~aGf~~~~~~~~~ 339 (350)
+++||+++++....
T Consensus 194 ~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 194 TACNFKNVVSKDLS 207 (266)
T ss_dssp HHTTCEEEEEEECH
T ss_pred HHcCCeEEEEEeCC
Confidence 99999999987754
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.9e-18 Score=150.36 Aligned_cols=157 Identities=14% Similarity=0.157 Sum_probs=122.3
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP 243 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p 243 (350)
...+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +++
T Consensus 50 ~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 126 (273)
T 3bus_A 50 TDEMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE 126 (273)
T ss_dssp HHHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCC
Confidence 355666676 6788999999999999999999987 689999999 888877653 4589999999998 665
Q ss_pred --CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHH
Q 018775 244 --KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEW 321 (350)
Q Consensus 244 --~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~ 321 (350)
.||+|++..++||+++. ..+|++++++|+ |||++++.+.......... .....+.... ..++...++.++|
T Consensus 127 ~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~ 199 (273)
T 3bus_A 127 DASFDAVWALESLHHMPDR--GRALREMARVLR-PGGTVAIADFVLLAPVEGA---KKEAVDAFRA-GGGVLSLGGIDEY 199 (273)
T ss_dssp TTCEEEEEEESCTTTSSCH--HHHHHHHHTTEE-EEEEEEEEEEEESSCCCHH---HHHHHHHHHH-HHTCCCCCCHHHH
T ss_pred CCCccEEEEechhhhCCCH--HHHHHHHHHHcC-CCeEEEEEEeeccCCCChh---HHHHHHHHHh-hcCccCCCCHHHH
Confidence 49999999999998775 578999999999 9999999998776533210 0111111111 1222567799999
Q ss_pred HHHHHhcCCceeEEEEcC
Q 018775 322 MKLLEQGGFHRCKIISMP 339 (350)
Q Consensus 322 ~~ll~~aGf~~~~~~~~~ 339 (350)
.++++++||+++++..++
T Consensus 200 ~~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 200 ESDVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHHHTTCEEEEEEECH
T ss_pred HHHHHHcCCeEEEEEECc
Confidence 999999999999887763
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-19 Score=153.26 Aligned_cols=169 Identities=17% Similarity=0.218 Sum_probs=121.3
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP 243 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p 243 (350)
...+++.++ ..+. +|||||||+|.++..+++. ++.+++++|+ +.+++.+++ ..+++++.+|+.+ +++
T Consensus 33 ~~~~~~~~~--~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 108 (219)
T 3dlc_A 33 AENIINRFG--ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIE 108 (219)
T ss_dssp HHHHHHHHC--CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSC
T ss_pred HHHHHHhcC--CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCC
Confidence 344555555 4455 9999999999999999998 8889999999 888887764 3589999999998 665
Q ss_pred --CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccc-cc-hhhhhhHhhhcCCcccCCHH
Q 018775 244 --KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGD-MG-LVFDLVMFAHTTGGKERTEQ 319 (350)
Q Consensus 244 --~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~s~~ 319 (350)
.||+|++..++||+++. ..+|++++++|+ |||++++.+...+......... .. ....+....... ...++.+
T Consensus 109 ~~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 184 (219)
T 3dlc_A 109 DNYADLIVSRGSVFFWEDV--ATAFREIYRILK-SGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKN-ISQENVE 184 (219)
T ss_dssp TTCEEEEEEESCGGGCSCH--HHHHHHHHHHEE-EEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHH-SSHHHHH
T ss_pred cccccEEEECchHhhccCH--HHHHHHHHHhCC-CCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhc-cccCCHH
Confidence 39999999999998654 578999999999 9999999874443211000000 00 000000000001 2334789
Q ss_pred HHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 320 EWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 320 e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
+|.++|+++||+++++........++..+|
T Consensus 185 ~~~~~l~~aGf~~v~~~~~~~~~~~~~~k~ 214 (219)
T 3dlc_A 185 RFQNVLDEIGISSYEIILGDEGFWIIISKT 214 (219)
T ss_dssp HHHHHHHHHTCSSEEEEEETTEEEEEEBCC
T ss_pred HHHHHHHHcCCCeEEEEecCCceEEEEecc
Confidence 999999999999999998877776665544
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=9e-18 Score=150.37 Aligned_cols=161 Identities=12% Similarity=0.169 Sum_probs=122.5
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCCC
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIPK 244 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p~ 244 (350)
..+++.++ ..++.+|||||||+|.++..++++++ .+++++|+ +.+++.+++ ..+++++.+|+.+ + ..
T Consensus 54 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~ 129 (287)
T 1kpg_A 54 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-EP 129 (287)
T ss_dssp HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-CC
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-CC
Confidence 44566666 67788999999999999999997764 49999999 888887654 3589999999976 4 56
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCC-----ccc-ccchhhhhhHhhhcCCcccCCH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNN-----IFG-DMGLVFDLVMFAHTTGGKERTE 318 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~s~ 318 (350)
||+|++..++||+++++...+|++++++|+ |||++++.+......... +.. ......+.......+++..++.
T Consensus 130 fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 208 (287)
T 1kpg_A 130 VDRIVSIGAFEHFGHERYDAFFSLAHRLLP-ADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSI 208 (287)
T ss_dssp CSEEEEESCGGGTCTTTHHHHHHHHHHHSC-TTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCH
T ss_pred eeEEEEeCchhhcChHHHHHHHHHHHHhcC-CCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCH
Confidence 999999999999987777899999999999 999999999877543210 000 0001111111223343667799
Q ss_pred HHHHHHHHhcCCceeEEEEcC
Q 018775 319 QEWMKLLEQGGFHRCKIISMP 339 (350)
Q Consensus 319 ~e~~~ll~~aGf~~~~~~~~~ 339 (350)
++|.++++++||+++++...+
T Consensus 209 ~~~~~~l~~aGf~~~~~~~~~ 229 (287)
T 1kpg_A 209 PMVQECASANGFTVTRVQSLQ 229 (287)
T ss_dssp HHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHhCCcEEEEEEeCc
Confidence 999999999999999987753
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.76 E-value=9.2e-18 Score=151.07 Aligned_cols=153 Identities=14% Similarity=0.209 Sum_probs=119.5
Q ss_pred HHHHHhc----ccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-
Q 018775 174 KALVSHY----KDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD- 240 (350)
Q Consensus 174 ~~~~~~~----~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~- 240 (350)
..+++.+ . ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ ..+++++.+|+.+
T Consensus 68 ~~l~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 144 (297)
T 2o57_A 68 EWLASELAMTGV--LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI 144 (297)
T ss_dssp HHHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred HHHHHHhhhccC--CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC
Confidence 4455555 4 6678899999999999999999986 468999999 888887754 3689999999998
Q ss_pred CCC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCH
Q 018775 241 AIP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTE 318 (350)
Q Consensus 241 ~~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 318 (350)
+++ .||+|++..++||+++ ...+|++++++|+ |||++++.+......... .....+...... ....+.
T Consensus 145 ~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~ 214 (297)
T 2o57_A 145 PCEDNSYDFIWSQDAFLHSPD--KLKVFQECARVLK-PRGVMAITDPMKEDGIDK-----SSIQPILDRIKL--HDMGSL 214 (297)
T ss_dssp SSCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEE-EEEEEEEEEEEECTTCCG-----GGGHHHHHHHTC--SSCCCH
T ss_pred CCCCCCEeEEEecchhhhcCC--HHHHHHHHHHHcC-CCeEEEEEEeccCCCCch-----HHHHHHHHHhcC--CCCCCH
Confidence 665 3999999999999987 4688999999999 999999999887654321 111111111111 235589
Q ss_pred HHHHHHHHhcCCceeEEEEcC
Q 018775 319 QEWMKLLEQGGFHRCKIISMP 339 (350)
Q Consensus 319 ~e~~~ll~~aGf~~~~~~~~~ 339 (350)
++|.++++++||+++++..++
T Consensus 215 ~~~~~~l~~aGf~~~~~~~~~ 235 (297)
T 2o57_A 215 GLYRSLAKECGLVTLRTFSRP 235 (297)
T ss_dssp HHHHHHHHHTTEEEEEEEECH
T ss_pred HHHHHHHHHCCCeEEEEEECc
Confidence 999999999999999987753
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-18 Score=152.40 Aligned_cols=162 Identities=16% Similarity=0.144 Sum_probs=118.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCC-CccEEEecc-hhccCCh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIP-KADAVFMKW-ILHDWDD 259 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p-~~D~i~~~~-vlh~~~~ 259 (350)
+++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++||+++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCC
Confidence 456899999999999999999885 47999999 888888875 4589999999998 554 499999998 9999865
Q ss_pred -HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCccc---------------------ccchhhhhhHhhhcCC-----
Q 018775 260 -EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFG---------------------DMGLVFDLVMFAHTTG----- 312 (350)
Q Consensus 260 -~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~----- 312 (350)
++...+|++++++|+ |||++++.+...+........ .....+++.+....++
T Consensus 127 ~~~~~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (263)
T 3pfg_A 127 QAELDAALERFAAHVL-PDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITH 205 (263)
T ss_dssp HHHHHHHHHHHHHTEE-EEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEE
T ss_pred HHHHHHHHHHHHHhcC-CCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEE
Confidence 567799999999999 999999865433332211000 0000001111110010
Q ss_pred ------cccCCHHHHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 313 ------GKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 313 ------~~~~s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
.+.++.++|.++|+++||+++++........++.++|
T Consensus 206 ~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K 248 (263)
T 3pfg_A 206 HEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP 248 (263)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence 2345899999999999999999877777777788877
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=151.45 Aligned_cols=154 Identities=18% Similarity=0.332 Sum_probs=117.1
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC-
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP- 243 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p- 243 (350)
...+++.++ ..++.+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ +++
T Consensus 26 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~ 101 (260)
T 1vl5_A 26 LAKLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD 101 (260)
T ss_dssp HHHHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred HHHHHHHhC--CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC
Confidence 345556665 66789999999999999999999875 8999999 888887764 2579999999998 765
Q ss_pred -CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh-HhhhcCCcccCCHHHH
Q 018775 244 -KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV-MFAHTTGGKERTEQEW 321 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~ 321 (350)
.||+|++..++||+++. ..+|++++++|+ |||++++.+...+.... ...++... ......+...++.++|
T Consensus 102 ~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lk-pgG~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (260)
T 1vl5_A 102 ERFHIVTCRIAAHHFPNP--ASFVSEAYRVLK-KGGQLLLVDNSAPENDA-----FDVFYNYVEKERDYSHHRAWKKSDW 173 (260)
T ss_dssp TCEEEEEEESCGGGCSCH--HHHHHHHHHHEE-EEEEEEEEEEEBCSSHH-----HHHHHHHHHHHHCTTCCCCCBHHHH
T ss_pred CCEEEEEEhhhhHhcCCH--HHHHHHHHHHcC-CCCEEEEEEcCCCCCHH-----HHHHHHHHHHhcCccccCCCCHHHH
Confidence 49999999999999876 478999999999 99999999877654311 11111111 1111111355689999
Q ss_pred HHHHHhcCCceeEEEEc
Q 018775 322 MKLLEQGGFHRCKIISM 338 (350)
Q Consensus 322 ~~ll~~aGf~~~~~~~~ 338 (350)
.++|+++||+++.+...
T Consensus 174 ~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 174 LKMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHHTCEEEEEEEE
T ss_pred HHHHHHCCCeEEEEEEe
Confidence 99999999998887654
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-17 Score=149.23 Aligned_cols=163 Identities=10% Similarity=0.104 Sum_probs=123.7
Q ss_pred HhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEec
Q 018775 165 MACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGG 236 (350)
Q Consensus 165 m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~ 236 (350)
+..........+++.++ ...++.+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ .++++++.+
T Consensus 97 ~~~~~~~~~~~l~~~l~-~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 174 (312)
T 3vc1_A 97 LHRLESAQAEFLMDHLG-QAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVC 174 (312)
T ss_dssp HHHHHHHHHHHHHTTSC-CCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred hhhHHHHHHHHHHHHhc-cCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEEC
Confidence 33334334455666654 24678899999999999999999985 578999999 888887764 358999999
Q ss_pred cCCC-CCC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCc
Q 018775 237 DMFD-AIP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGG 313 (350)
Q Consensus 237 d~~~-~~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (350)
|+.+ +++ .||+|++..++||++ ...+|++++++|+ |||++++.+......... ............. .
T Consensus 175 d~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~----~~~~~~~~~~~~~--~ 244 (312)
T 3vc1_A 175 NMLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLK-VGGRYVTITGCWNPRYGQ----PSKWVSQINAHFE--C 244 (312)
T ss_dssp CTTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEE-EEEEEEEEEEEECTTTCS----CCHHHHHHHHHHT--C
T ss_pred ChhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcC-CCcEEEEEEccccccccc----hhHHHHHHHhhhc--C
Confidence 9998 655 499999999999984 5689999999999 999999999887664321 1111222211112 2
Q ss_pred ccCCHHHHHHHHHhcCCceeEEEEcC
Q 018775 314 KERTEQEWMKLLEQGGFHRCKIISMP 339 (350)
Q Consensus 314 ~~~s~~e~~~ll~~aGf~~~~~~~~~ 339 (350)
..++.++|.++++++||+++++..++
T Consensus 245 ~~~s~~~~~~~l~~aGf~~~~~~~~~ 270 (312)
T 3vc1_A 245 NIHSRREYLRAMADNRLVPHTIVDLT 270 (312)
T ss_dssp CCCBHHHHHHHHHTTTEEEEEEEECH
T ss_pred CCCCHHHHHHHHHHCCCEEEEEEeCC
Confidence 36689999999999999999988753
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.7e-18 Score=150.84 Aligned_cols=149 Identities=17% Similarity=0.257 Sum_probs=117.9
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCC--Cc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIP--KA 245 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p--~~ 245 (350)
..+++.+. ..++.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .|
T Consensus 83 ~~~l~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 159 (254)
T 1xtp_A 83 RNFIASLP--GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY 159 (254)
T ss_dssp HHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred HHHHHhhc--ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCe
Confidence 44555565 5678999999999999999999886 457999998 888887764 2679999999987 554 49
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHH
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLL 325 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll 325 (350)
|+|++.+++||+++++...+|++++++|+ |||++++.+........ ..+. ... ...++.++|.++|
T Consensus 160 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~--------~~~~----~~~-~~~~~~~~~~~~l 225 (254)
T 1xtp_A 160 DLIVIQWTAIYLTDADFVKFFKHCQQALT-PNGYIFFKENCSTGDRF--------LVDK----EDS-SLTRSDIHYKRLF 225 (254)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEBC--CCE--------EEET----TTT-EEEBCHHHHHHHH
T ss_pred EEEEEcchhhhCCHHHHHHHHHHHHHhcC-CCeEEEEEecCCCcccc--------eecc----cCC-cccCCHHHHHHHH
Confidence 99999999999998888999999999999 99999998865433211 0110 111 3456899999999
Q ss_pred HhcCCceeEEEEcC
Q 018775 326 EQGGFHRCKIISMP 339 (350)
Q Consensus 326 ~~aGf~~~~~~~~~ 339 (350)
+++||+++++....
T Consensus 226 ~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 226 NESGVRVVKEAFQE 239 (254)
T ss_dssp HHHTCCEEEEEECT
T ss_pred HHCCCEEEEeeecC
Confidence 99999999987754
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=146.98 Aligned_cols=152 Identities=13% Similarity=0.095 Sum_probs=117.0
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC-
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP- 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p- 243 (350)
..+++.+. ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+ +.+
T Consensus 26 ~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 26 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 34455555 6778999999999999999999987 678999999 888887754 3589999999998 443
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHH
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMK 323 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ 323 (350)
.||+|++..++||+++. ..+|++++++|+ |||++++.+.......... ..... ... ......++.++|.+
T Consensus 103 ~fD~V~~~~~~~~~~~~--~~~l~~~~r~Lk-pgG~l~~~~~~~~~~~~~~-----~~~~~-~~~-~~~~~~~~~~~~~~ 172 (256)
T 1nkv_A 103 KCDVAACVGATWIAGGF--AGAEELLAQSLK-PGGIMLIGEPYWRQLPATE-----EIAQA-CGV-SSTSDFLTLPGLVG 172 (256)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEE-EEEEEEEEEEEETTCCSSH-----HHHHT-TTC-SCGGGSCCHHHHHH
T ss_pred CCCEEEECCChHhcCCH--HHHHHHHHHHcC-CCeEEEEecCcccCCCChH-----HHHHH-Hhc-ccccccCCHHHHHH
Confidence 49999999999998754 578999999999 9999999998765543210 01100 000 11124568999999
Q ss_pred HHHhcCCceeEEEEc
Q 018775 324 LLEQGGFHRCKIISM 338 (350)
Q Consensus 324 ll~~aGf~~~~~~~~ 338 (350)
+|+++||+++++...
T Consensus 173 ~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 173 AFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHTTTBCCCEEEEC
T ss_pred HHHHCCCeeEEEEeC
Confidence 999999999887654
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=150.85 Aligned_cols=163 Identities=14% Similarity=0.152 Sum_probs=124.9
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCCCc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIPKA 245 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p~~ 245 (350)
..+++.+. ..++.+|||||||+|.++..+++.++ .+++++|+ +.+++.+++ .++++++.+|+.+....|
T Consensus 62 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~f 138 (302)
T 3hem_A 62 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 138 (302)
T ss_dssp HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCc
Confidence 45666666 67889999999999999999999876 79999999 888887764 348999999997652359
Q ss_pred cEEEecchhccCCh-------HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCccccc------chhhhhhHhhhcCC
Q 018775 246 DAVFMKWILHDWDD-------EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDM------GLVFDLVMFAHTTG 312 (350)
Q Consensus 246 D~i~~~~vlh~~~~-------~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 312 (350)
|+|++..++||+++ ++...++++++++|+ |||++++.+...+.......... ....++.....+++
T Consensus 139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 217 (302)
T 3hem_A 139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTP-DDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPG 217 (302)
T ss_dssp SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSC-TTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTT
T ss_pred cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcC-CCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCC
Confidence 99999999999944 567799999999999 99999998887664321100000 00112222223444
Q ss_pred cccCCHHHHHHHHHhcCCceeEEEEcCC
Q 018775 313 GKERTEQEWMKLLEQGGFHRCKIISMPA 340 (350)
Q Consensus 313 ~~~~s~~e~~~ll~~aGf~~~~~~~~~~ 340 (350)
+..++.+++.++++++||+++++..++.
T Consensus 218 ~~~~s~~~~~~~l~~aGf~~~~~~~~~~ 245 (302)
T 3hem_A 218 GRLPRISQVDYYSSNAGWKVERYHRIGA 245 (302)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred CCCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence 6778999999999999999999887653
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.6e-18 Score=143.79 Aligned_cols=146 Identities=16% Similarity=0.100 Sum_probs=117.0
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCC--CccEEEecchhccCChHH
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIP--KADAVFMKWILHDWDDEA 261 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~~~~~ 261 (350)
+.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++||++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 789999999999999999987 568999999 888888876 5689999999988 554 499999999999998777
Q ss_pred HHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcCC-
Q 018775 262 CVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPA- 340 (350)
Q Consensus 262 ~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~- 340 (350)
...+|++++++|+ |||++++.....+.... + .. .... ...++.++|.++|+++||+++++...+.
T Consensus 120 ~~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~--~---~~-------~~~~-~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 185 (203)
T 3h2b_A 120 LPDALVALRMAVE-DGGGLLMSFFSGPSLEP--M---YH-------PVAT-AYRWPLPELAQALETAGFQVTSSHWDPRF 185 (203)
T ss_dssp HHHHHHHHHHTEE-EEEEEEEEEECCSSCEE--E---CC-------SSSC-EEECCHHHHHHHHHHTTEEEEEEEECTTS
T ss_pred HHHHHHHHHHHcC-CCcEEEEEEccCCchhh--h---hc-------hhhh-hccCCHHHHHHHHHHCCCcEEEEEecCCC
Confidence 8899999999999 99999998765543110 0 00 0011 3456899999999999999999988754
Q ss_pred ceeEEEEe
Q 018775 341 LYSIIEAY 348 (350)
Q Consensus 341 ~~~vi~~~ 348 (350)
++..+...
T Consensus 186 p~~~l~~~ 193 (203)
T 3h2b_A 186 PHAYLTAE 193 (203)
T ss_dssp SEEEEEEE
T ss_pred cchhhhhh
Confidence 45555443
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-17 Score=142.11 Aligned_cols=141 Identities=20% Similarity=0.269 Sum_probs=111.0
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC---CCC--CccEEEecchhccC
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD---AIP--KADAVFMKWILHDW 257 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~p--~~D~i~~~~vlh~~ 257 (350)
+.++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.+ +++ .||+|++..++||+
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~ 114 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHL 114 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGS
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhC
Confidence 456789999999999999999987 557899999 8899888754 8999999876 444 49999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEE
Q 018775 258 DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 258 ~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~ 337 (350)
++++...+|++++++|+ |||++++....... .....+.. ....+...++.+++.++++++||+++++..
T Consensus 115 ~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~--------~~~~~~~~--~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 183 (240)
T 3dli_A 115 DPERLFELLSLCYSKMK-YSSYIVIESPNPTS--------LYSLINFY--IDPTHKKPVHPETLKFILEYLGFRDVKIEF 183 (240)
T ss_dssp CGGGHHHHHHHHHHHBC-TTCCEEEEEECTTS--------HHHHHHHT--TSTTCCSCCCHHHHHHHHHHHTCEEEEEEE
T ss_pred CcHHHHHHHHHHHHHcC-CCcEEEEEeCCcch--------hHHHHHHh--cCccccccCCHHHHHHHHHHCCCeEEEEEE
Confidence 98888899999999999 99999987654211 11111111 111223556899999999999999998876
Q ss_pred cC
Q 018775 338 MP 339 (350)
Q Consensus 338 ~~ 339 (350)
..
T Consensus 184 ~~ 185 (240)
T 3dli_A 184 FE 185 (240)
T ss_dssp EC
T ss_pred ec
Confidence 54
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.2e-17 Score=148.27 Aligned_cols=163 Identities=14% Similarity=0.185 Sum_probs=123.3
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIPK 244 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p~ 244 (350)
...+++.++ ..++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++++.+|+.+....
T Consensus 79 ~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 155 (318)
T 2fk8_A 79 VDLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEP 155 (318)
T ss_dssp HHHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCC
T ss_pred HHHHHHhcC--CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCC
Confidence 345666666 6778899999999999999999886 569999999 888887764 25799999998762246
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccc------cchhhhhhHhhhcCCcccCCH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGD------MGLVFDLVMFAHTTGGKERTE 318 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~s~ 318 (350)
||+|++..++||+++++...+|++++++|+ |||++++.+...+......... .....++......+++..++.
T Consensus 156 fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 234 (318)
T 2fk8_A 156 VDRIVSIEAFEHFGHENYDDFFKRCFNIMP-ADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPST 234 (318)
T ss_dssp CSEEEEESCGGGTCGGGHHHHHHHHHHHSC-TTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCH
T ss_pred cCEEEEeChHHhcCHHHHHHHHHHHHHhcC-CCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCH
Confidence 999999999999987778899999999999 9999999888765522100000 000111211122333567799
Q ss_pred HHHHHHHHhcCCceeEEEEcC
Q 018775 319 QEWMKLLEQGGFHRCKIISMP 339 (350)
Q Consensus 319 ~e~~~ll~~aGf~~~~~~~~~ 339 (350)
+++.++++++||+++++..++
T Consensus 235 ~~~~~~l~~aGf~~~~~~~~~ 255 (318)
T 2fk8_A 235 EMMVEHGEKAGFTVPEPLSLR 255 (318)
T ss_dssp HHHHHHHHHTTCBCCCCEECH
T ss_pred HHHHHHHHhCCCEEEEEEecc
Confidence 999999999999999887653
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.6e-18 Score=152.70 Aligned_cols=165 Identities=17% Similarity=0.120 Sum_probs=121.3
Q ss_pred CCCcceEEEecCCchHHHHHHH-HHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC-CccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIV-KSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP-KADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p-~~D~i~~~~ 252 (350)
..++.+|||||||+|.++..++ ..+|+.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 4678899999999999999996 6688999999999 888887764 3569999999998 554 499999999
Q ss_pred hhccCChHH-HHHHHHHHHhhCCCCCceEEEEeeeecCCCCCccc----ccc----hhhhhhHhhhcCC--cccCCHHHH
Q 018775 253 ILHDWDDEA-CVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFG----DMG----LVFDLVMFAHTTG--GKERTEQEW 321 (350)
Q Consensus 253 vlh~~~~~~-~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~--~~~~s~~e~ 321 (350)
++||+++.+ ...++++++++|+ |||++++.+...+........ ... ......+...... ...++.+++
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALK-PGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT 274 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEE-EEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcC-CCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH
Confidence 999997554 4579999999999 999999988665543322110 000 0000011111110 134689999
Q ss_pred HHHHHhcCCceeEEEEcC-CceeEEEEee
Q 018775 322 MKLLEQGGFHRCKIISMP-ALYSIIEAYP 349 (350)
Q Consensus 322 ~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 349 (350)
.++|+++||+++++.... .....+.++|
T Consensus 275 ~~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 275 RAQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp HHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred HHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 999999999999998764 3455677766
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=144.85 Aligned_cols=163 Identities=17% Similarity=0.144 Sum_probs=118.7
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCC-CccEEEe-cchhccCCh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIP-KADAVFM-KWILHDWDD 259 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p-~~D~i~~-~~vlh~~~~ 259 (350)
.++.+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++ ..++||+++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 4678999999999999999999876 8999999 888888775 4679999999988 554 4999995 559999854
Q ss_pred -HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccc---------------------cchhhhhhHhhhcCCc----
Q 018775 260 -EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGD---------------------MGLVFDLVMFAHTTGG---- 313 (350)
Q Consensus 260 -~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~---- 313 (350)
++...+|++++++|+ |||++++.+...++........ ......+.+.....++
T Consensus 117 ~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (239)
T 3bxo_A 117 TEELGAAVASFAEHLE-PGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRH 195 (239)
T ss_dssp HHHHHHHHHHHHHTEE-EEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEE
T ss_pred HHHHHHHHHHHHHhcC-CCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceE
Confidence 577899999999999 9999998766554432110000 0000011111111101
Q ss_pred -------ccCCHHHHHHHHHhcCCceeEEEEcCCceeEEEEeeC
Q 018775 314 -------KERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYPQ 350 (350)
Q Consensus 314 -------~~~s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~~ 350 (350)
+.++.++|.++|+++||+++.+....+...++.|+|.
T Consensus 196 ~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K~ 239 (239)
T 3bxo_A 196 FSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVPA 239 (239)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEEC
T ss_pred EEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEecC
Confidence 3468999999999999977766555566789999873
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=145.12 Aligned_cols=153 Identities=16% Similarity=0.272 Sum_probs=116.9
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC--
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP-- 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p-- 243 (350)
..+++.++ ..++.+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..+++++.+|+.+ +++
T Consensus 11 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 86 (239)
T 1xxl_A 11 GLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD 86 (239)
T ss_dssp HHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred chHHHHhC--cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCC
Confidence 44555566 77889999999999999999998865 8999999 888887764 2579999999987 655
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhh-hHhhhcCCcccCCHHHHH
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDL-VMFAHTTGGKERTEQEWM 322 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~e~~ 322 (350)
.||+|++..++||+++. ..+|++++++|+ |||++++.+...+.... ...+... .......+...++.++|.
T Consensus 87 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (239)
T 1xxl_A 87 SFDIITCRYAAHHFSDV--RKAVREVARVLK-QDGRFLLVDHYAPEDPV-----LDEFVNHLNRLRDPSHVRESSLSEWQ 158 (239)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHHEE-EEEEEEEEEECBCSSHH-----HHHHHHHHHHHHCTTCCCCCBHHHHH
T ss_pred cEEEEEECCchhhccCH--HHHHHHHHHHcC-CCcEEEEEEcCCCCChh-----HHHHHHHHHHhccccccCCCCHHHHH
Confidence 39999999999999865 578999999999 99999999877654311 1111111 111111113556899999
Q ss_pred HHHHhcCCceeEEEEc
Q 018775 323 KLLEQGGFHRCKIISM 338 (350)
Q Consensus 323 ~ll~~aGf~~~~~~~~ 338 (350)
++|+++||+++++...
T Consensus 159 ~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 159 AMFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHHTTEEEEEEEEE
T ss_pred HHHHHCCCcEEEEEee
Confidence 9999999998887654
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4e-17 Score=143.64 Aligned_cols=143 Identities=15% Similarity=0.200 Sum_probs=113.9
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC--CccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP--KADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p--~~D~i~~~~ 252 (350)
..++.+|||||||+|.++..+++.++. +++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG 122 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecC
Confidence 567789999999999999999999876 9999999 888887654 4579999999987 655 499999999
Q ss_pred hhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCce
Q 018775 253 ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHR 332 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~ 332 (350)
++||++ ...+|++++++|+ |||++++.+......... ......... .. ....+.++|.++++++||++
T Consensus 123 ~l~~~~---~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~-----~~~~~~~~~-~~--~~~~~~~~~~~~l~~aGf~~ 190 (257)
T 3f4k_A 123 AIYNIG---FERGMNEWSKYLK-KGGFIAVSEASWFTSERP-----AEIEDFWMD-AY--PEISVIPTCIDKMERAGYTP 190 (257)
T ss_dssp CSCCCC---HHHHHHHHHTTEE-EEEEEEEEEEEESSSCCC-----HHHHHHHHH-HC--TTCCBHHHHHHHHHHTTEEE
T ss_pred hHhhcC---HHHHHHHHHHHcC-CCcEEEEEEeeccCCCCh-----HHHHHHHHH-hC--CCCCCHHHHHHHHHHCCCeE
Confidence 999983 3578999999999 999999999875554322 111122111 12 23568999999999999999
Q ss_pred eEEEEcC
Q 018775 333 CKIISMP 339 (350)
Q Consensus 333 ~~~~~~~ 339 (350)
+++...+
T Consensus 191 v~~~~~~ 197 (257)
T 3f4k_A 191 TAHFILP 197 (257)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9988765
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.9e-17 Score=144.06 Aligned_cols=143 Identities=17% Similarity=0.200 Sum_probs=114.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC--CccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP--KADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p--~~D~i~~~~ 252 (350)
..++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|++..
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEG 122 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcC
Confidence 567899999999999999999998 7889999999 888887764 3679999999988 654 499999999
Q ss_pred hhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCce
Q 018775 253 ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHR 332 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~ 332 (350)
++|+++ ...+|++++++|+ |||++++.+......... ........ ... ....+.+++.++++++||++
T Consensus 123 ~~~~~~---~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~-----~~~~~~~~-~~~--~~~~~~~~~~~~l~~aGf~~ 190 (267)
T 3kkz_A 123 AIYNIG---FERGLNEWRKYLK-KGGYLAVSECSWFTDERP-----AEINDFWM-DAY--PEIDTIPNQVAKIHKAGYLP 190 (267)
T ss_dssp CGGGTC---HHHHHHHHGGGEE-EEEEEEEEEEEESSSCCC-----HHHHHHHH-HHC--TTCEEHHHHHHHHHHTTEEE
T ss_pred CceecC---HHHHHHHHHHHcC-CCCEEEEEEeeecCCCCh-----HHHHHHHH-HhC--CCCCCHHHHHHHHHHCCCEE
Confidence 999983 3578999999999 999999999876544322 11111111 112 24558999999999999999
Q ss_pred eEEEEcC
Q 018775 333 CKIISMP 339 (350)
Q Consensus 333 ~~~~~~~ 339 (350)
+++..++
T Consensus 191 v~~~~~~ 197 (267)
T 3kkz_A 191 VATFILP 197 (267)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9998876
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-17 Score=147.52 Aligned_cols=171 Identities=13% Similarity=0.165 Sum_probs=120.3
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----C----CCeEEEeccCCC-C
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----C----EGIFHVGGDMFD-A 241 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~----~~i~~~~~d~~~-~ 241 (350)
...+++.++ . ...+|||||||+|.++..+++. +.+++++|+ +.+++.+++ . .+++++.+|+.+ +
T Consensus 72 ~~~~~~~~~--~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 146 (299)
T 3g2m_A 72 AREFATRTG--P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA 146 (299)
T ss_dssp HHHHHHHHC--C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred HHHHHHhhC--C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence 344555555 2 3449999999999999999987 568999999 888888765 1 689999999998 5
Q ss_pred CC-CccEEEe-cchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccc-------h------------
Q 018775 242 IP-KADAVFM-KWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMG-------L------------ 300 (350)
Q Consensus 242 ~p-~~D~i~~-~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~-------~------------ 300 (350)
.+ .||+|++ ..++|++++++...+|++++++|+ |||+|++.....+........... .
T Consensus 147 ~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 225 (299)
T 3g2m_A 147 LDKRFGTVVISSGSINELDEADRRGLYASVREHLE-PGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAE 225 (299)
T ss_dssp CSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEE-EEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEE
T ss_pred cCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcC-CCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccc
Confidence 55 4998886 477888888788999999999999 999999977655432110000000 0
Q ss_pred -hhhhhHhh----------hcCCcccCCHHHHHHHHHhcCCceeEEEEcCC------ceeEEEEee
Q 018775 301 -VFDLVMFA----------HTTGGKERTEQEWMKLLEQGGFHRCKIISMPA------LYSIIEAYP 349 (350)
Q Consensus 301 -~~~~~~~~----------~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~------~~~vi~~~~ 349 (350)
...+.+.. .....+.++.++|.++|+++||+++++.+.+. ...++++.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~~ 291 (299)
T 3g2m_A 226 EIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAVM 291 (299)
T ss_dssp EEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEEC
T ss_pred cEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehhh
Confidence 00000000 00001245999999999999999999988752 235777654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-17 Score=146.67 Aligned_cols=151 Identities=15% Similarity=0.280 Sum_probs=114.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC--CccEEEecch
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP--KADAVFMKWI 253 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p--~~D~i~~~~v 253 (350)
+.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56789999999999999999999999999999999 888887754 3579999999998 554 4999999999
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCccc-ccchhhhh-h-HhhhcCCcccCCHHHHHHHHHhcCC
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFG-DMGLVFDL-V-MFAHTTGGKERTEQEWMKLLEQGGF 330 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~-~~~~~~~~-~-~~~~~~~~~~~s~~e~~~ll~~aGf 330 (350)
+||+++.. .+|++++++|+ |||.+++.+.........+.. .....+.. . .....+ +..++..++.++|+++||
T Consensus 115 l~~~~~~~--~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~aGf 190 (276)
T 3mgg_A 115 LEHLQSPE--EALKSLKKVLK-PGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMK-GNSLVGRQIYPLLQESGF 190 (276)
T ss_dssp GGGCSCHH--HHHHHHHHHEE-EEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTT-CCTTGGGGHHHHHHHTTC
T ss_pred hhhcCCHH--HHHHHHHHHcC-CCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHCCC
Confidence 99998764 78999999999 999999988654322100000 00111111 1 111222 455677899999999999
Q ss_pred ceeEEEEc
Q 018775 331 HRCKIISM 338 (350)
Q Consensus 331 ~~~~~~~~ 338 (350)
+++++.+.
T Consensus 191 ~~v~~~~~ 198 (276)
T 3mgg_A 191 EKIRVEPR 198 (276)
T ss_dssp EEEEEEEE
T ss_pred CeEEEeeE
Confidence 99988754
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-17 Score=139.44 Aligned_cols=134 Identities=9% Similarity=0.047 Sum_probs=106.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------------------CCCeEEEeccCCC-CCC
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------------------CEGIFHVGGDMFD-AIP 243 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~i~~~~~d~~~-~~p 243 (350)
..++.+|||+|||+|..+..|+++ +.+++++|+ +.+++.+++ ..+++++++|+.+ +.+
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~ 97 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 97 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence 567889999999999999999997 568999999 889887753 2479999999998 543
Q ss_pred ---CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHH
Q 018775 244 ---KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQE 320 (350)
Q Consensus 244 ---~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e 320 (350)
.||+|++..++|++++++...++++++++|+ |||+++++....+.... ..+ ....+.++
T Consensus 98 ~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lk-pgG~~~l~~~~~~~~~~----------------~~~-~~~~~~~e 159 (203)
T 1pjz_A 98 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMP-QACSGLLITLEYDQALL----------------EGP-PFSVPQTW 159 (203)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSC-SEEEEEEEEESSCSSSS----------------SSC-CCCCCHHH
T ss_pred cCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcC-CCcEEEEEEEecCcccc----------------CCC-CCCCCHHH
Confidence 4999999999999998888889999999999 99996655433321100 001 12347899
Q ss_pred HHHHHHhcCCceeEEEEc
Q 018775 321 WMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 321 ~~~ll~~aGf~~~~~~~~ 338 (350)
+.+++++ ||+++.+...
T Consensus 160 l~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 160 LHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp HHHTSCS-SEEEEEEEES
T ss_pred HHHHhcC-CcEEEEeccc
Confidence 9999999 9998877664
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.5e-17 Score=142.21 Aligned_cols=132 Identities=16% Similarity=0.184 Sum_probs=108.7
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC-CccEEEecchhcc
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP-KADAVFMKWILHD 256 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh~ 256 (350)
..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 35999999999999999876 5678999999 888887764 2469999999998 333 4999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEE
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII 336 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~ 336 (350)
+++++...+|++++++|+ |||++++.+......... . ....+.++|.++|+++||+++++.
T Consensus 145 ~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~-----------------~-~~~~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLK-PDGELITLMYPITDHVGG-----------------P-PYKVDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp SCGGGHHHHHHHHHHHEE-EEEEEEEEECCCSCCCSC-----------------S-SCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCC-CCcEEEEEEecccccCCC-----------------C-CccCCHHHHHHHHHHcCCeEEEEE
Confidence 998888899999999999 999999977655432211 0 123578999999999999999988
Q ss_pred EcC
Q 018775 337 SMP 339 (350)
Q Consensus 337 ~~~ 339 (350)
..+
T Consensus 206 ~~~ 208 (235)
T 3lcc_A 206 ENP 208 (235)
T ss_dssp ECT
T ss_pred ecC
Confidence 764
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-16 Score=146.01 Aligned_cols=214 Identities=10% Similarity=0.007 Sum_probs=140.8
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch-hhhcCCCCChHHH
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK-WLLHDSELSLAPM 112 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~-~l~~~~~~~~~~~ 112 (350)
++|..| . +|.|.+|||+.+++ +++.+++||++|.+.|+++..+ + |++|+.+. ++...+.......
T Consensus 47 ~ll~~L-~--~~~t~~eLa~~~g~---~~~~v~~~L~~l~~~gll~~~~-------~-~~lt~~~~~~l~~~~~~~~~~~ 112 (373)
T 2qm3_A 47 NVLSAV-L--ASDDIWRIVDLSEE---PLPLVVAILESLNELGYVTFED-------G-VKLTEKGEELVAEYGIGKRYDF 112 (373)
T ss_dssp HHHHHH-H--HCSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECSS-------S-SEECHHHHHHHHHHTCCCCCC-
T ss_pred HHHHHh-c--CCCCHHHHHHHhCC---ChHHHHHHHHHHhhCCcEEECC-------C-EEECHHHHHHHHhcCccccccc
Confidence 789999 4 69999999999999 8999999999999999998864 5 99999776 4443221111111
Q ss_pred HH-Hhc-----CchhhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHHHHhhhhhhhHHHHHHhcccCCCC
Q 018775 113 IL-VEN-----NQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGFDS 186 (350)
Q Consensus 113 ~~-~~~-----~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 186 (350)
+. ... ...+...|..+.+.++....+.. .|+.....+.. .....+ .... .. ..+
T Consensus 113 ~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~l---------~~~~-~~--~~~ 172 (373)
T 2qm3_A 113 TCPHCQGKTVDLQAFADLLEQFREIVKDRPEPLH------EFDQAYVTPET--TVARVI---------LMHT-RG--DLE 172 (373)
T ss_dssp -----------CGGGHHHHHHHHHHHTTCCCCCG------GGTCCCBCHHH--HHHHHH---------HHHH-TT--CST
T ss_pred cchhhcCCCcchhhhHHHHHHHHHHHhcCCccch------hcCCeecCHHH--HHHHHH---------HHhh-cC--CCC
Confidence 10 000 01112234555555554321111 11110011111 111111 0011 11 235
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC-----CccEEEecchh
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP-----KADAVFMKWIL 254 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p-----~~D~i~~~~vl 254 (350)
+.+||||| |+|.++..+++..|+.+++++|+ +.+++.+++ ..+++++.+|+.+++| .||+|++...+
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~ 251 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPE 251 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCS
T ss_pred CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCC
Confidence 68999999 99999999999988889999999 899888765 2389999999988432 49999998766
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
+.. ....++++++++|+ |||++++++..
T Consensus 252 ~~~---~~~~~l~~~~~~Lk-pgG~~~~~~~~ 279 (373)
T 2qm3_A 252 TLE---AIRAFVGRGIATLK-GPRCAGYFGIT 279 (373)
T ss_dssp SHH---HHHHHHHHHHHTBC-STTCEEEEEEC
T ss_pred chH---HHHHHHHHHHHHcc-cCCeEEEEEEe
Confidence 543 24789999999999 99987665543
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-17 Score=135.92 Aligned_cols=142 Identities=12% Similarity=0.157 Sum_probs=114.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCCCccEEEecchhccCChH
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIPKADAVFMKWILHDWDDE 260 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p~~D~i~~~~vlh~~~~~ 260 (350)
..++.+|||||||+|.++..+++... +++++|+ +.+++.+++ ..++++..+| .. +...||+|++..++||+++.
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d-~~~~~~~~D~v~~~~~l~~~~~~ 91 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP-KEIPDNSVDFILFANSFHDMDDK 91 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG-GGSCTTCEEEEEEESCSTTCSCH
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC-CCCCCCceEEEEEccchhcccCH
Confidence 66788999999999999999999874 8999999 888887765 5789999999 32 22359999999999998754
Q ss_pred HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcCC
Q 018775 261 ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPA 340 (350)
Q Consensus 261 ~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~ 340 (350)
..++++++++|+ |||++++.+.........+ .....++.++|.++++ ||+++++...+.
T Consensus 92 --~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~ 150 (170)
T 3i9f_A 92 --QHVISEVKRILK-DDGRVIIIDWRKENTGIGP----------------PLSIRMDEKDYMGWFS--NFVVEKRFNPTP 150 (170)
T ss_dssp --HHHHHHHHHHEE-EEEEEEEEEECSSCCSSSS----------------CGGGCCCHHHHHHHTT--TEEEEEEECSST
T ss_pred --HHHHHHHHHhcC-CCCEEEEEEcCccccccCc----------------hHhhhcCHHHHHHHHh--CcEEEEccCCCC
Confidence 588999999999 9999999987665433211 0023357999999999 999999999987
Q ss_pred ceeEEEEee
Q 018775 341 LYSIIEAYP 349 (350)
Q Consensus 341 ~~~vi~~~~ 349 (350)
....+.+.+
T Consensus 151 ~~~~l~~~~ 159 (170)
T 3i9f_A 151 YHFGLVLKR 159 (170)
T ss_dssp TEEEEEEEE
T ss_pred ceEEEEEec
Confidence 777666654
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.71 E-value=7.5e-17 Score=138.50 Aligned_cols=144 Identities=15% Similarity=0.069 Sum_probs=105.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------C----CCeEEEeccCCC-CCC--CccEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------C----EGIFHVGGDMFD-AIP--KADAV 248 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~----~~i~~~~~d~~~-~~p--~~D~i 248 (350)
..++.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ . .+++++.+|+.. +.+ .||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V 106 (219)
T 3jwg_A 27 SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAA 106 (219)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEE
Confidence 34678999999999999999999988899999999 888887764 1 289999999976 432 49999
Q ss_pred EecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH----HH
Q 018775 249 FMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM----KL 324 (350)
Q Consensus 249 ~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~----~l 324 (350)
++..++||+++++...+|++++++|+ |||.+++........... ......... ..+...++.+++. ++
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~~i~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~l~~~~~~l 178 (219)
T 3jwg_A 107 TVIEVIEHLDENRLQAFEKVLFEFTR-PQTVIVSTPNKEYNFHYG------NLFEGNLRH-RDHRFEWTRKEFQTWAVKV 178 (219)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTC-CSEEEEEEEBGGGGGCCC------CT-----GG-GCCTTSBCHHHHHHHHHHH
T ss_pred EEHHHHHhCCHHHHHHHHHHHHHhhC-CCEEEEEccchhhhhhhc------ccCcccccc-cCceeeecHHHHHHHHHHH
Confidence 99999999999888899999999999 999655443321111100 000001111 1113445788888 88
Q ss_pred HHhcCCceeEE
Q 018775 325 LEQGGFHRCKI 335 (350)
Q Consensus 325 l~~aGf~~~~~ 335 (350)
++++||++...
T Consensus 179 ~~~~Gf~v~~~ 189 (219)
T 3jwg_A 179 AEKYGYSVRFL 189 (219)
T ss_dssp HHHHTEEEEEE
T ss_pred HHHCCcEEEEE
Confidence 99999976543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=142.26 Aligned_cols=141 Identities=17% Similarity=0.236 Sum_probs=111.2
Q ss_pred CCcceEEEecCCc---hHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCCC------------C--
Q 018775 185 DSIQSLADVGGGT---GGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFDA------------I-- 242 (350)
Q Consensus 185 ~~~~~vLDvG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~------------~-- 242 (350)
.+..+|||||||+ |.++..+.+.+|+.+++++|+ |.+++.+++ ..+++++.+|+.++ +
T Consensus 76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~ 155 (274)
T 2qe6_A 76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDF 155 (274)
T ss_dssp TCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred cCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCC
Confidence 3458999999999 998888888899999999999 899888764 46899999999762 2
Q ss_pred CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH
Q 018775 243 PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM 322 (350)
Q Consensus 243 p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~ 322 (350)
..||+|++..+|||+++++...+|++++++|+ |||+|++.+...+. .. ......+.......+ ...++.+++.
T Consensus 156 ~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~-pGG~l~i~~~~~~~--~~---~~~~~~~~~~~~~~~-~~~~s~~ei~ 228 (274)
T 2qe6_A 156 SRPAAIMLVGMLHYLSPDVVDRVVGAYRDALA-PGSYLFMTSLVDTG--LP---AQQKLARITRENLGE-GWARTPEEIE 228 (274)
T ss_dssp TSCCEEEETTTGGGSCTTTHHHHHHHHHHHSC-TTCEEEEEEEBCSS--CH---HHHHHHHHHHHHHSC-CCCBCHHHHH
T ss_pred CCCEEEEEechhhhCCcHHHHHHHHHHHHhCC-CCcEEEEEEecCcc--hH---HHHHHHHHHHhcCCC-CccCCHHHHH
Confidence 35999999999999998878899999999999 99999999876532 11 011222322222233 5678999999
Q ss_pred HHHHhcCCceeE
Q 018775 323 KLLEQGGFHRCK 334 (350)
Q Consensus 323 ~ll~~aGf~~~~ 334 (350)
++| .||++++
T Consensus 229 ~~l--~G~~l~~ 238 (274)
T 2qe6_A 229 RQF--GDFELVE 238 (274)
T ss_dssp HTT--TTCEECT
T ss_pred HHh--CCCeEcc
Confidence 999 5998775
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.71 E-value=7e-17 Score=140.71 Aligned_cols=142 Identities=13% Similarity=0.199 Sum_probs=109.8
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---CCCeEEEeccCCC-CCC--CccEEEecchhccC
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---CEGIFHVGGDMFD-AIP--KADAVFMKWILHDW 257 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~ 257 (350)
+++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++.+++||+
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 46789999999999999999997 568999999 888887765 5789999999998 654 49999999999998
Q ss_pred ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEE
Q 018775 258 DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 258 ~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~ 337 (350)
++. ..+|++++++|+ |||++++.+......... ..+......... ...++.+++.++++++||++++...
T Consensus 130 ~~~--~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~l~~~Gf~~~~~~~ 199 (242)
T 3l8d_A 130 EEP--LRALNEIKRVLK-SDGYACIAILGPTAKPRE------NSYPRLYGKDVV-CNTMMPWEFEQLVKEQGFKVVDGIG 199 (242)
T ss_dssp SCH--HHHHHHHHHHEE-EEEEEEEEEECTTCGGGG------GGGGGGGTCCCS-SCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred cCH--HHHHHHHHHHhC-CCeEEEEEEcCCcchhhh------hhhhhhcccccc-ccCCCHHHHHHHHHHcCCEEEEeec
Confidence 765 478999999999 999999987543322110 111111111111 3456899999999999999999875
Q ss_pred c
Q 018775 338 M 338 (350)
Q Consensus 338 ~ 338 (350)
+
T Consensus 200 ~ 200 (242)
T 3l8d_A 200 V 200 (242)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-17 Score=143.54 Aligned_cols=138 Identities=14% Similarity=0.214 Sum_probs=112.5
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC--CccEEEecchhc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP--KADAVFMKWILH 255 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh 255 (350)
++.+|||||||+|.++..+++.+ ..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 57899999999999999999876 568999999 888887764 2358999999887 444 499999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEE
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKI 335 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~ 335 (350)
|+++++...+|++++++|+ |||++++.+....... .++. ..+...++.++|.++|+++||+++++
T Consensus 158 ~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~---------~~~~-----~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLR-PNGIIVIKDNMAQEGV---------ILDD-----VDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEE-EEEEEEEEEEEBSSSE---------EEET-----TTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred hCCHHHHHHHHHHHHHhcC-CCeEEEEEEccCCCcc---------eecc-----cCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 9999888899999999999 9999999988765410 0110 11134458999999999999999999
Q ss_pred EEcC
Q 018775 336 ISMP 339 (350)
Q Consensus 336 ~~~~ 339 (350)
....
T Consensus 223 ~~~~ 226 (241)
T 2ex4_A 223 ERQE 226 (241)
T ss_dssp EECC
T ss_pred eecC
Confidence 8764
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.70 E-value=9.6e-17 Score=149.62 Aligned_cols=144 Identities=17% Similarity=0.291 Sum_probs=113.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCCC--------------CCeEEEeccCCC-------C
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPVC--------------EGIFHVGGDMFD-------A 241 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--------------~~i~~~~~d~~~-------~ 241 (350)
.++.+|||||||+|.++..+++.+ |+.+++++|+ +.+++.+++. .+++++.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 467899999999999999999986 7889999999 8888877641 689999999987 4
Q ss_pred CC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHH
Q 018775 242 IP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQ 319 (350)
Q Consensus 242 ~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 319 (350)
++ .||+|++..++|++++. ..+|++++++|+ |||+|++.+......... ............. +..++.+
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~ 232 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLR-DGGELYFSDVYADRRLSE-----AAQQDPILYGECL-GGALYLE 232 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEE-EEEEEEEEEEEESSCCCH-----HHHHCHHHHHTTC-TTCCBHH
T ss_pred CCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcC-CCCEEEEEEeccccccCH-----hHhhhHHHhhccc-ccCCCHH
Confidence 44 39999999999998875 588999999999 999999998877653321 1111222222222 4567899
Q ss_pred HHHHHHHhcCCceeEEEE
Q 018775 320 EWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 320 e~~~ll~~aGf~~~~~~~ 337 (350)
+|.++|+++||+.+++..
T Consensus 233 ~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 233 DFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHCCCceEEEEe
Confidence 999999999999887654
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.3e-17 Score=142.09 Aligned_cols=157 Identities=18% Similarity=0.164 Sum_probs=111.6
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---CCCeEEEeccCCC-CCC--CccE
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---CEGIFHVGGDMFD-AIP--KADA 247 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~p--~~D~ 247 (350)
.+.+.++ ..++.+|||||||+|.++..+++..+. +++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+
T Consensus 35 ~l~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 35 ELKKMLP--DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp HHHTTCC--CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHhhh--ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence 3455555 457899999999999999999998654 8999999 888887765 4689999999987 654 4999
Q ss_pred EEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecC------------CCCCcccccchhhhh-----hHh-hh
Q 018775 248 VFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQE------------DGNNIFGDMGLVFDL-----VMF-AH 309 (350)
Q Consensus 248 i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~------------~~~~~~~~~~~~~~~-----~~~-~~ 309 (350)
|++..++||+++ ...+|++++++|+ |||++++....... ............++- ... ..
T Consensus 112 v~~~~~l~~~~~--~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (253)
T 3g5l_A 112 VLSSLALHYIAS--FDDICKKVYINLK-SSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGED 188 (253)
T ss_dssp EEEESCGGGCSC--HHHHHHHHHHHEE-EEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEE
T ss_pred EEEchhhhhhhh--HHHHHHHHHHHcC-CCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeecccc
Confidence 999999999865 4688999999999 99999986533210 000000000000000 000 00
Q ss_pred cCCcccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 310 TTGGKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 310 ~~~~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
.. ...++.++|.++|+++||+++++...
T Consensus 189 ~~-~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 189 VQ-KYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp EE-EECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred Cc-cEecCHHHHHHHHHHcCCeeeeeecC
Confidence 01 12348999999999999999998754
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.1e-17 Score=137.47 Aligned_cols=138 Identities=14% Similarity=0.077 Sum_probs=109.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-CCC-CccEEEecchhccCChH
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-AIP-KADAVFMKWILHDWDDE 260 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh~~~~~ 260 (350)
+.++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++..+++++.+|+.+ +.+ .||+|++..++||++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 346789999999999999999987 568999999 8888888754467888899887 533 49999999999999988
Q ss_pred HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcC-CceeEEEEc
Q 018775 261 ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGG-FHRCKIISM 338 (350)
Q Consensus 261 ~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aG-f~~~~~~~~ 338 (350)
+...+|++++++|+ |||++++............ . ......++.++|.++|+++| |+++++...
T Consensus 119 ~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~-------~-------~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~ 182 (211)
T 3e23_A 119 ELADVLKLIWRALK-PGGLFYASYKSGEGEGRDK-------L-------ARYYNYPSEEWLRARYAEAGTWASVAVESS 182 (211)
T ss_dssp HHHHHHHHHHHHEE-EEEEEEEEEECCSSCEECT-------T-------SCEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred HHHHHHHHHHHhcC-CCcEEEEEEcCCCcccccc-------c-------chhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence 88899999999999 9999998754333211100 0 00023458999999999999 999998764
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.69 E-value=5e-16 Score=137.15 Aligned_cols=151 Identities=17% Similarity=0.234 Sum_probs=114.3
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-CCC--CccEEE
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-AIP--KADAVF 249 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~p--~~D~i~ 249 (350)
..+.+.++ ..++.+|||||||+|.++..+++ ++.+++++|+ +.+++.++...+++++.+|+.+ +++ .||+|+
T Consensus 24 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~ 99 (261)
T 3ege_A 24 NAIINLLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVI 99 (261)
T ss_dssp HHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEE
T ss_pred HHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEE
Confidence 34455555 56789999999999999999997 6789999999 8999998876699999999988 665 499999
Q ss_pred ecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcC
Q 018775 250 MKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGG 329 (350)
Q Consensus 250 ~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aG 329 (350)
+.+++||+++. ..+|++++++|+ ||++++.+...+...... ....+... ..... ...++.+++. +|+++|
T Consensus 100 ~~~~l~~~~~~--~~~l~~~~~~Lk--gG~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~-~~~~~~~~~~-~l~~aG 169 (261)
T 3ege_A 100 SILAIHHFSHL--EKSFQEMQRIIR--DGTIVLLTFDIRLAQRIW---LYDYFPFL-WEDAL-RFLPLDEQIN-LLQENT 169 (261)
T ss_dssp EESCGGGCSSH--HHHHHHHHHHBC--SSCEEEEEECGGGCCCCG---GGGTCHHH-HHHHH-TSCCHHHHHH-HHHHHH
T ss_pred EcchHhhccCH--HHHHHHHHHHhC--CcEEEEEEcCCchhHHHH---HHHHHHHH-hhhhh-hhCCCHHHHH-HHHHcC
Confidence 99999998664 588999999999 899999887654332210 00111111 11111 2344678888 999999
Q ss_pred CceeEEEEc
Q 018775 330 FHRCKIISM 338 (350)
Q Consensus 330 f~~~~~~~~ 338 (350)
|+.+++...
T Consensus 170 F~~v~~~~~ 178 (261)
T 3ege_A 170 KRRVEAIPF 178 (261)
T ss_dssp CSEEEEEEC
T ss_pred CCceeEEEe
Confidence 999988765
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=142.53 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=111.9
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCCC-ccEEEecchh
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIPK-ADAVFMKWIL 254 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p~-~D~i~~~~vl 254 (350)
..++.+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.++ ||+|++..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l 99 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 99 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence 567899999999999999999999984 89999999 888877654 3489999999998 5554 9999999999
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeec--------CCCCC-cccccchhhhhhH--hhhcCCcccCCHHHHHH
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQ--------EDGNN-IFGDMGLVFDLVM--FAHTTGGKERTEQEWMK 323 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~--------~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~s~~e~~~ 323 (350)
|++++. ..++++++++|+ |||++++.++... ++... .......+..+.. ....+ ....+.+++.+
T Consensus 100 ~~~~~~--~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ 175 (284)
T 3gu3_A 100 LHMTTP--ETMLQKMIHSVK-KGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNG-KDGNIGMKIPI 175 (284)
T ss_dssp GGCSSH--HHHHHHHHHTEE-EEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTC-CCTTGGGTHHH
T ss_pred hcCCCH--HHHHHHHHHHcC-CCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhc-ccccHHHHHHH
Confidence 999876 488999999999 9999999887611 11100 0000111111111 11122 34456778999
Q ss_pred HHHhcCCceeEEEEc
Q 018775 324 LLEQGGFHRCKIISM 338 (350)
Q Consensus 324 ll~~aGf~~~~~~~~ 338 (350)
+|+++||+.+++...
T Consensus 176 ~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 176 YLSELGVKNIECRVS 190 (284)
T ss_dssp HHHHTTCEEEEEEEC
T ss_pred HHHHcCCCeEEEEEc
Confidence 999999999987543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-16 Score=136.40 Aligned_cols=157 Identities=18% Similarity=0.165 Sum_probs=110.8
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---CCCeEEEeccCCC-CCC--CccE
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---CEGIFHVGGDMFD-AIP--KADA 247 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~p--~~D~ 247 (350)
.+...++ ..++.+|||||||+|.++..+++... .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+
T Consensus 34 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 110 (243)
T 3bkw_A 34 ALRAMLP--EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDL 110 (243)
T ss_dssp HHHHHSC--CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHhcc--ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceE
Confidence 3444455 45688999999999999999998732 38999999 888887764 3479999999988 554 4999
Q ss_pred EEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecC--CCCCcc--cc-------cchhh-----hhhHhh-hc
Q 018775 248 VFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQE--DGNNIF--GD-------MGLVF-----DLVMFA-HT 310 (350)
Q Consensus 248 i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~--~~~~~~--~~-------~~~~~-----~~~~~~-~~ 310 (350)
|++..++||+++ ...+|++++++|+ |||++++....... ...... .. ....+ ...... ..
T Consensus 111 v~~~~~l~~~~~--~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (243)
T 3bkw_A 111 AYSSLALHYVED--VARLFRTVHQALS-PGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGV 187 (243)
T ss_dssp EEEESCGGGCSC--HHHHHHHHHHHEE-EEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSC
T ss_pred EEEeccccccch--HHHHHHHHHHhcC-cCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCce
Confidence 999999999875 4588999999999 99999997743211 000000 00 00000 000000 11
Q ss_pred CCcccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 311 TGGKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 311 ~~~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
. ...++.++|.++|+++||+++++...
T Consensus 188 ~-~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 188 V-KHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp C-EEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred E-EEeccHHHHHHHHHHcCCEeeeeccC
Confidence 1 23468999999999999999998764
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=136.70 Aligned_cols=143 Identities=13% Similarity=0.018 Sum_probs=104.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------C----CCeEEEeccCCC-CCC--CccEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------C----EGIFHVGGDMFD-AIP--KADAV 248 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~----~~i~~~~~d~~~-~~p--~~D~i 248 (350)
..++.+|||||||+|.++..+++.++..+++++|+ +.+++.+++ . .+++++.+|+.. +.+ .||+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 35678999999999999999999988889999999 888887754 1 279999999976 433 59999
Q ss_pred EecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH----HH
Q 018775 249 FMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM----KL 324 (350)
Q Consensus 249 ~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~----~l 324 (350)
++..++||+++++...+|++++++|+ |||.+++........... ........ ...+...++.+++. ++
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 178 (217)
T 3jwh_A 107 TVIEVIEHLDLSRLGAFERVLFEFAQ-PKIVIVTTPNIEYNVKFA------NLPAGKLR-HKDHRFEWTRSQFQNWANKI 178 (217)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTC-CSEEEEEEEBHHHHHHTC------------------CCSCBCHHHHHHHHHHH
T ss_pred eeHHHHHcCCHHHHHHHHHHHHHHcC-CCEEEEEccCcccchhhc------cccccccc-ccccccccCHHHHHHHHHHH
Confidence 99999999999888899999999999 999766654321100000 00000000 01113445888888 99
Q ss_pred HHhcCCceeE
Q 018775 325 LEQGGFHRCK 334 (350)
Q Consensus 325 l~~aGf~~~~ 334 (350)
++++||++..
T Consensus 179 ~~~~Gf~v~~ 188 (217)
T 3jwh_A 179 TERFAYNVQF 188 (217)
T ss_dssp HHHSSEEEEE
T ss_pred HHHcCceEEE
Confidence 9999998654
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-16 Score=138.55 Aligned_cols=147 Identities=15% Similarity=0.153 Sum_probs=107.6
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--CCCeEEEeccCCCCCC--CccEEEecchhccCCh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--CEGIFHVGGDMFDAIP--KADAVFMKWILHDWDD 259 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~~~p--~~D~i~~~~vlh~~~~ 259 (350)
.++.+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++.++|||+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 3567899999999999999998866 6899999 888887765 2289999999987433 4999999999999987
Q ss_pred HHHHHHHHHHH-hhCCCCCceEEEEeeeecCCCC------CcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCce
Q 018775 260 EACVKILKNCR-QAIPDKSGKLVLVEIVVQEDGN------NIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHR 332 (350)
Q Consensus 260 ~~~~~~L~~~~-~~L~~pgG~lli~e~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~ 332 (350)
. ..+|++++ ++|+ |||++++.++....... ........+..... ...+...++.+++.++|+++||++
T Consensus 119 ~--~~~l~~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~Gf~~ 193 (250)
T 2p7i_A 119 P--VALLKRINDDWLA-EGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEF--AHGHRCTYALDTLERDASRAGLQV 193 (250)
T ss_dssp H--HHHHHHHHHTTEE-EEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHH--HTTCCCCCCHHHHHHHHHHTTCEE
T ss_pred H--HHHHHHHHHHhcC-CCCEEEEEcCChHHHHHHHHHHcCccccchhcccccc--cccccccCCHHHHHHHHHHCCCeE
Confidence 6 58899999 9999 99999998754322100 00000000000000 112245679999999999999999
Q ss_pred eEEEEc
Q 018775 333 CKIISM 338 (350)
Q Consensus 333 ~~~~~~ 338 (350)
+++...
T Consensus 194 ~~~~~~ 199 (250)
T 2p7i_A 194 TYRSGI 199 (250)
T ss_dssp EEEEEE
T ss_pred EEEeee
Confidence 988653
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-16 Score=135.93 Aligned_cols=149 Identities=16% Similarity=0.126 Sum_probs=109.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----------CCCeEEEeccCCC-CCC--CccEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----------CEGIFHVGGDMFD-AIP--KADAV 248 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~-~~p--~~D~i 248 (350)
++++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 346789999999999999999987 668999999 888776653 2368999999998 554 49999
Q ss_pred EecchhccCChH-HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcC--------------Cc
Q 018775 249 FMKWILHDWDDE-ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTT--------------GG 313 (350)
Q Consensus 249 ~~~~vlh~~~~~-~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~ 313 (350)
++..++|++++. +...+|++++++|+ |||++++.+......... . .......+......+ ..
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLK-PGAYLYLVEFGQNWHLKL-Y-RKRYLHDFPITKEEGSFLARDPETGETEFIA 182 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEE-EEEEEEEEEEBCCTTSHH-H-HHHHHHHHHHHCSTTEEEEECTTTCCEEEEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcC-CCeEEEEEECCcchhHHH-H-HHHhhhhccchhhhcceEecccccCCcceee
Confidence 999999999764 46689999999999 999999998765432210 0 000000000000000 01
Q ss_pred ccCCHHHHHHHHHhcCCceeEEEE
Q 018775 314 KERTEQEWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 314 ~~~s~~e~~~ll~~aGf~~~~~~~ 337 (350)
..++.++|.++|+++||+++++..
T Consensus 183 ~~~~~~~l~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 183 HHFTEKELVFLLTDCRFEIDYFRV 206 (235)
T ss_dssp ECBCHHHHHHHHHTTTEEEEEEEE
T ss_pred EeCCHHHHHHHHHHcCCEEEEEEe
Confidence 356899999999999999998864
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-16 Score=136.68 Aligned_cols=162 Identities=15% Similarity=0.110 Sum_probs=113.7
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC-CccEEEecc-hhcc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP-KADAVFMKW-ILHD 256 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p-~~D~i~~~~-vlh~ 256 (350)
++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++||
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 6789999999999999999987 468999999 888887765 2279999999987 554 499999998 9999
Q ss_pred CCh-HHHHHHHHHHHhhCCCCCceEEEEeeeecCC----CCCcc----cccc-----------hhhhhhHhhhcC-----
Q 018775 257 WDD-EACVKILKNCRQAIPDKSGKLVLVEIVVQED----GNNIF----GDMG-----------LVFDLVMFAHTT----- 311 (350)
Q Consensus 257 ~~~-~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~----~~~~~----~~~~-----------~~~~~~~~~~~~----- 311 (350)
+++ ++...+|++++++|+ |||++++........ ....+ .... ....+.++...+
T Consensus 115 ~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLK-EGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKR 193 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEE-EEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEE
T ss_pred cCCHHHHHHHHHHHHHhcC-CCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCcccc
Confidence 853 677899999999999 999999733221100 00000 0000 000000000001
Q ss_pred -----CcccCCHHHHHHHHHhcCCceeEEEEc--------CCceeEEEEeeC
Q 018775 312 -----GGKERTEQEWMKLLEQGGFHRCKIISM--------PALYSIIEAYPQ 350 (350)
Q Consensus 312 -----~~~~~s~~e~~~ll~~aGf~~~~~~~~--------~~~~~vi~~~~~ 350 (350)
+.+.++.++|.++|+++||+++++... .....++.|+|.
T Consensus 194 ~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK~ 245 (246)
T 1y8c_A 194 FDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLG 245 (246)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEEC
T ss_pred cEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEec
Confidence 013458999999999999999999754 224557888873
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.7e-16 Score=130.64 Aligned_cols=140 Identities=14% Similarity=0.100 Sum_probs=110.3
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC-Ccc
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP-KAD 246 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p-~~D 246 (350)
+++.++ ..++.+|||||||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .||
T Consensus 24 l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 99 (199)
T 2xvm_A 24 VLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYD 99 (199)
T ss_dssp HHHHTT--TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEE
T ss_pred HHHHhh--ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCce
Confidence 344444 456779999999999999999987 568999999 888887764 2379999999988 544 499
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHH
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLE 326 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~ 326 (350)
+|++..++||+++++...++++++++|+ |||++++.+.........+ .+....++.+++.++|+
T Consensus 100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~ 163 (199)
T 2xvm_A 100 FILSTVVLMFLEAKTIPGLIANMQRCTK-PGGYNLIVAAMDTADYPCT---------------VGFPFAFKEGELRRYYE 163 (199)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHTEE-EEEEEEEEEEBCCSSSCCC---------------SCCSCCBCTTHHHHHTT
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcC-CCeEEEEEEeeccCCcCCC---------------CCCCCccCHHHHHHHhc
Confidence 9999999999998788899999999999 9999999887665432110 01123457899999998
Q ss_pred hcCCceeEEEE
Q 018775 327 QGGFHRCKIIS 337 (350)
Q Consensus 327 ~aGf~~~~~~~ 337 (350)
+ |++++...
T Consensus 164 ~--f~~~~~~~ 172 (199)
T 2xvm_A 164 G--WERVKYNE 172 (199)
T ss_dssp T--SEEEEEEC
T ss_pred C--CeEEEecc
Confidence 7 99888754
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.66 E-value=8e-16 Score=129.05 Aligned_cols=136 Identities=16% Similarity=0.150 Sum_probs=111.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCC--CccEEEec-chhccCC
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIP--KADAVFMK-WILHDWD 258 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p--~~D~i~~~-~vlh~~~ 258 (350)
+++.+|||||||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+ +.+ .||+|++. .++|+++
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~ 122 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLA 122 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSC
T ss_pred cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcC
Confidence 56789999999999999999987 568999999 888887765 4579999999998 554 49999998 8999998
Q ss_pred hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 259 DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 259 ~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
+++...+|++++++|+ |||++++.... ...++.+++.++++++||+++++...
T Consensus 123 ~~~~~~~l~~~~~~l~-~~G~l~~~~~~--------------------------~~~~~~~~~~~~l~~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 123 EDGREPALANIHRALG-ADGRAVIGFGA--------------------------GRGWVFGDFLEVAERVGLELENAFES 175 (195)
T ss_dssp HHHHHHHHHHHHHHEE-EEEEEEEEEET--------------------------TSSCCHHHHHHHHHHHTEEEEEEESS
T ss_pred hHHHHHHHHHHHHHhC-CCCEEEEEeCC--------------------------CCCcCHHHHHHHHHHcCCEEeeeecc
Confidence 8888899999999999 99999985421 12246899999999999999988654
Q ss_pred --------CCceeEEEEee
Q 018775 339 --------PALYSIIEAYP 349 (350)
Q Consensus 339 --------~~~~~vi~~~~ 349 (350)
.....++.++|
T Consensus 176 ~~~~~~~~~~~~~~~v~~k 194 (195)
T 3cgg_A 176 WDLKPFVQGSEFLVAVFTK 194 (195)
T ss_dssp TTCCBCCTTCSEEEEEEEE
T ss_pred cccCcCCCCCcEEEEEEec
Confidence 23355677766
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-16 Score=140.23 Aligned_cols=153 Identities=16% Similarity=0.150 Sum_probs=112.4
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCC-CccEEEe
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIP-KADAVFM 250 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p-~~D~i~~ 250 (350)
.+++.+. ..++.+|||||||+|.++..+++ ++.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++
T Consensus 48 ~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 123 (279)
T 3ccf_A 48 DLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFS 123 (279)
T ss_dssp HHHHHHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEE
T ss_pred HHHHHhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEE
Confidence 4455555 56788999999999999999998 7789999999 888887765 4679999999998 555 4999999
Q ss_pred cchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhh------hcCCcccCCHHHHHHH
Q 018775 251 KWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFA------HTTGGKERTEQEWMKL 324 (350)
Q Consensus 251 ~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~s~~e~~~l 324 (350)
..++|++++. ..+|++++++|+ |||++++......... .. ...+....... .......++.++|.++
T Consensus 124 ~~~l~~~~d~--~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (279)
T 3ccf_A 124 NAMLHWVKEP--EAAIASIHQALK-SGGRFVAEFGGKGNIK--YI--LEALYNALETLGIHNPQALNPWYFPSIGEYVNI 196 (279)
T ss_dssp ESCGGGCSCH--HHHHHHHHHHEE-EEEEEEEEEECTTTTH--HH--HHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHH
T ss_pred cchhhhCcCH--HHHHHHHHHhcC-CCcEEEEEecCCcchH--HH--HHHHHHHHHhcCCccccCcCceeCCCHHHHHHH
Confidence 9999998865 478999999999 9999998664322210 00 00111110000 0000234589999999
Q ss_pred HHhcCCceeEEEEc
Q 018775 325 LEQGGFHRCKIISM 338 (350)
Q Consensus 325 l~~aGf~~~~~~~~ 338 (350)
|+++||+++++...
T Consensus 197 l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 197 LEKQGFDVTYAALF 210 (279)
T ss_dssp HHHHTEEEEEEEEE
T ss_pred HHHcCCEEEEEEEe
Confidence 99999999887654
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.1e-16 Score=137.94 Aligned_cols=160 Identities=11% Similarity=0.105 Sum_probs=114.8
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hh------HhhhCCC-------CCCeEEEecc-
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PH------VVATAPV-------CEGIFHVGGD- 237 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~------~~~~a~~-------~~~i~~~~~d- 237 (350)
..+++.++ ..++.+|||||||+|.++..+++.+ |+.+++++|+ +. +++.+++ ..+++++.+|
T Consensus 33 ~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~ 110 (275)
T 3bkx_A 33 LAIAEAWQ--VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN 110 (275)
T ss_dssp HHHHHHHT--CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence 34566666 6788999999999999999999985 7789999999 54 6766653 2689999998
Q ss_pred CCC---CCC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCccccc-chhhhhhHhhh--
Q 018775 238 MFD---AIP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDM-GLVFDLVMFAH-- 309 (350)
Q Consensus 238 ~~~---~~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~-~~~~~~~~~~~-- 309 (350)
+.. +++ .||+|++..++||+++.+ .+++.++.+++ |||++++.+...+.......... ..+....+...
T Consensus 111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~-~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (275)
T 3bkx_A 111 LSDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAA-VCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAP 187 (275)
T ss_dssp TTTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTT-TCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSC
T ss_pred hhhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhC-CCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccc
Confidence 443 333 499999999999998875 47888888888 89999999988765432110000 00000001000
Q ss_pred --cC-CcccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 310 --TT-GGKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 310 --~~-~~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
.. ....++.++|.++++++||+++++..+
T Consensus 188 ~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 188 SDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp CTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred cccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 01 013568999999999999999988765
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.9e-16 Score=136.19 Aligned_cols=148 Identities=11% Similarity=0.090 Sum_probs=110.7
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCC-CccEEEe
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIP-KADAVFM 250 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p-~~D~i~~ 250 (350)
.+++.+. ..++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++
T Consensus 24 ~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 101 (259)
T 2p35_A 24 DLLAQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYA 101 (259)
T ss_dssp HHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEE
T ss_pred HHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEE
Confidence 4555565 56788999999999999999999999999999999 888888765 5689999999988 522 4999999
Q ss_pred cchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhH----hhhc-----CCcccCCHHHH
Q 018775 251 KWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVM----FAHT-----TGGKERTEQEW 321 (350)
Q Consensus 251 ~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~----~~~~-----~~~~~~s~~e~ 321 (350)
..++|++++. ..+|++++++|+ |||++++.......... ...+..+.. .... .+...++.++|
T Consensus 102 ~~~l~~~~~~--~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (259)
T 2p35_A 102 NAVFQWVPDH--LAVLSQLMDQLE-SGGVLAVQMPDNLQEPT-----HIAMHETADGGPWKDAFSGGGLRRKPLPPPSDY 173 (259)
T ss_dssp ESCGGGSTTH--HHHHHHHGGGEE-EEEEEEEEEECCTTSHH-----HHHHHHHHHHSTTGGGC-------CCCCCHHHH
T ss_pred eCchhhCCCH--HHHHHHHHHhcC-CCeEEEEEeCCCCCcHH-----HHHHHHHhcCcchHHHhccccccccCCCCHHHH
Confidence 9999998654 578999999999 99999998753221100 000111100 0000 11345689999
Q ss_pred HHHHHhcCCce
Q 018775 322 MKLLEQGGFHR 332 (350)
Q Consensus 322 ~~ll~~aGf~~ 332 (350)
.++|+++||.+
T Consensus 174 ~~~l~~aGf~v 184 (259)
T 2p35_A 174 FNALSPKSSRV 184 (259)
T ss_dssp HHHHGGGEEEE
T ss_pred HHHHHhcCCce
Confidence 99999999974
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.4e-17 Score=145.26 Aligned_cols=146 Identities=14% Similarity=0.197 Sum_probs=106.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCC-----------------------------------
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVC----------------------------------- 228 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------------------------- 228 (350)
.++.+|||||||+|.++..+++.++..+++++|+ +.+++.|++.
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 3578999999999999999999999999999999 8888766430
Q ss_pred -----------------------------CCeEEEeccCCCCC--------CCccEEEecchhccC----ChHHHHHHHH
Q 018775 229 -----------------------------EGIFHVGGDMFDAI--------PKADAVFMKWILHDW----DDEACVKILK 267 (350)
Q Consensus 229 -----------------------------~~i~~~~~d~~~~~--------p~~D~i~~~~vlh~~----~~~~~~~~L~ 267 (350)
.+|+|+.+|+.... +.||+|++..+++++ +++....+++
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~ 204 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFR 204 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHH
Confidence 58999999998622 249999999999665 6678889999
Q ss_pred HHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHh--cCCceeEEEEc
Q 018775 268 NCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQ--GGFHRCKIISM 338 (350)
Q Consensus 268 ~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~--aGf~~~~~~~~ 338 (350)
+++++|+ |||+|++.......... ......... .... ......+++.++|.+ +||+.++++..
T Consensus 205 ~~~~~Lk-pGG~lil~~~~~~~y~~-----~~~~~~~~~-~~~~-~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 205 RIYRHLR-PGGILVLEPQPWSSYGK-----RKTLTETIY-KNYY-RIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHHEE-EEEEEEEECCCHHHHHT-----TTTSCHHHH-HHHH-HCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHHhC-CCcEEEEecCCchhhhh-----hhcccHHHH-hhhh-cEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 9999999 99999885332221100 000000000 0111 223347899999999 99998887654
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.3e-16 Score=134.23 Aligned_cols=161 Identities=18% Similarity=0.263 Sum_probs=112.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC-CccEEEecc-hhc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP-KADAVFMKW-ILH 255 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p-~~D~i~~~~-vlh 255 (350)
.++.+|||||||+|.++..+++. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.. ++|
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLN 108 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGG
T ss_pred CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchh
Confidence 34689999999999999998886 68999999 888887764 3579999999987 554 499999986 999
Q ss_pred cC-ChHHHHHHHHHHHhhCCCCCceEEEEeeeecC---CCCC-cc----c-------------ccchhhhhhHhhhcCC-
Q 018775 256 DW-DDEACVKILKNCRQAIPDKSGKLVLVEIVVQE---DGNN-IF----G-------------DMGLVFDLVMFAHTTG- 312 (350)
Q Consensus 256 ~~-~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~---~~~~-~~----~-------------~~~~~~~~~~~~~~~~- 312 (350)
|+ +.++...+|++++++|+ |||++++.-..... .... .+ . .......+.+....++
T Consensus 109 ~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (243)
T 3d2l_A 109 YLQTEADVKQTFDSAARLLT-DGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIEGEDG 187 (243)
T ss_dssp GCCSHHHHHHHHHHHHHHEE-EEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEEEEEEEEECTTS
T ss_pred hcCCHHHHHHHHHHHHHhcC-CCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEEEEEEEEEEcCCC
Confidence 98 45677899999999999 99999873221100 0000 00 0 0000000111100010
Q ss_pred ----------cccCCHHHHHHHHHhcCCceeEEEEc--------CCceeEEEEee
Q 018775 313 ----------GKERTEQEWMKLLEQGGFHRCKIISM--------PALYSIIEAYP 349 (350)
Q Consensus 313 ----------~~~~s~~e~~~ll~~aGf~~~~~~~~--------~~~~~vi~~~~ 349 (350)
.+.++.+++.++|+++||+++++... .....++.|+|
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~va~K 242 (243)
T 3d2l_A 188 RYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEK 242 (243)
T ss_dssp CEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTSSSCCCTTCSEEEEEEEE
T ss_pred ceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcccCCCCCCceEEEEEEEe
Confidence 13469999999999999999999764 12355888887
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.5e-16 Score=133.90 Aligned_cols=149 Identities=17% Similarity=0.101 Sum_probs=109.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---CCCeEEEeccCCC-CCC-------CccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---CEGIFHVGGDMFD-AIP-------KADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~p-------~~D~i~~~ 251 (350)
..++.+|||||||+|.++..+++.++ +++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 45678999999999999999999987 7999999 888887754 4589999999998 332 28999999
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCc-c----cccchhhhhhHhhhcCCcccCCHHHHHHHHH
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNI-F----GDMGLVFDLVMFAHTTGGKERTEQEWMKLLE 326 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~ 326 (350)
.++|++++++...+|++++++|+ |||++++.+...++..... . ..........+..... ...++.+++.++|
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~- 208 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLG-KQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIR-PGIFTAEDIELYF- 208 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHT-TTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCC-CCCCCHHHHHHHC-
T ss_pred chhhcCCHHHHHHHHHHHHHHcC-CCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCC-CCccCHHHHHHHh-
Confidence 99999998888899999999999 9999999987654311000 0 0000000001111111 1235899999999
Q ss_pred hcCCceeEEEEc
Q 018775 327 QGGFHRCKIISM 338 (350)
Q Consensus 327 ~aGf~~~~~~~~ 338 (350)
+||+++....+
T Consensus 209 -aGf~~~~~~~~ 219 (245)
T 3ggd_A 209 -PDFEILSQGEG 219 (245)
T ss_dssp -TTEEEEEEECC
T ss_pred -CCCEEEecccc
Confidence 99999886543
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-16 Score=135.49 Aligned_cols=165 Identities=16% Similarity=0.148 Sum_probs=114.8
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCC-----C-CC-cc
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDA-----I-PK-AD 246 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-----~-p~-~D 246 (350)
.+++.+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.+..+|+.+. . .. ||
T Consensus 43 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD 118 (227)
T 3e8s_A 43 AILLAIL--GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYD 118 (227)
T ss_dssp HHHHHHH--HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred HHHHHhh--cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCcc
Confidence 3444444 445689999999999999999987 568999999 88998887667788888876651 1 23 99
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcC-----CcccCCHHHH
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTT-----GGKERTEQEW 321 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~~e~ 321 (350)
+|++..++| .++ ...+|++++++|+ |||++++.+..........+.. .+.......... ....++.++|
T Consensus 119 ~v~~~~~l~-~~~--~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (227)
T 3e8s_A 119 LICANFALL-HQD--IIELLSAMRTLLV-PGGALVIQTLHPWSVADGDYQD--GWREESFAGFAGDWQPMPWYFRTLASW 192 (227)
T ss_dssp EEEEESCCC-SSC--CHHHHHHHHHTEE-EEEEEEEEECCTTTTCTTCCSC--EEEEECCTTSSSCCCCEEEEECCHHHH
T ss_pred EEEECchhh-hhh--HHHHHHHHHHHhC-CCeEEEEEecCccccCcccccc--ccchhhhhccccCcccceEEEecHHHH
Confidence 999999999 444 3578999999999 9999999886654433211100 000000000000 0234589999
Q ss_pred HHHHHhcCCceeEEEEc--CC----ceeEEEEee
Q 018775 322 MKLLEQGGFHRCKIISM--PA----LYSIIEAYP 349 (350)
Q Consensus 322 ~~ll~~aGf~~~~~~~~--~~----~~~vi~~~~ 349 (350)
.++|+++||+++++... +. ...++.++|
T Consensus 193 ~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~va~k 226 (227)
T 3e8s_A 193 LNALDMAGLRLVSLQEPQHPQSAVPQSLLMVAER 226 (227)
T ss_dssp HHHHHHTTEEEEEEECCCCTTCSSCSCEEEEEEE
T ss_pred HHHHHHcCCeEEEEecCCCCCCCCceeEEEEeec
Confidence 99999999999998763 11 134666665
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.8e-16 Score=138.97 Aligned_cols=156 Identities=16% Similarity=0.165 Sum_probs=113.3
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-C-CC-
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-A-IP- 243 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~-~p- 243 (350)
.+++.++ .++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ + ++
T Consensus 60 ~~l~~~~---~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 60 RVLAEMG---PQKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHTC---SSCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHhcC---CCCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 3444454 34689999999999999999987 678999999 888887764 2689999999988 4 33
Q ss_pred -CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhh-------hcCCccc
Q 018775 244 -KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFA-------HTTGGKE 315 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 315 (350)
.||+|++..++||+++. ..+|++++++|+ |||++++.+........... ....+...... .......
T Consensus 135 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (285)
T 4htf_A 135 TPVDLILFHAVLEWVADP--RSVLQTLWSVLR-PGGVLSLMFYNAHGLLMHNM--VAGNFDYVQAGMPKKKKRTLSPDYP 209 (285)
T ss_dssp SCEEEEEEESCGGGCSCH--HHHHHHHHHTEE-EEEEEEEEEEBHHHHHHHHH--HTTCHHHHHTTCCCC----CCCSCC
T ss_pred CCceEEEECchhhcccCH--HHHHHHHHHHcC-CCeEEEEEEeCCchHHHHHH--HhcCHHHHhhhccccccccCCCCCC
Confidence 49999999999999875 578999999999 99999998765432110000 00000000000 0111245
Q ss_pred CCHHHHHHHHHhcCCceeEEEEcCC
Q 018775 316 RTEQEWMKLLEQGGFHRCKIISMPA 340 (350)
Q Consensus 316 ~s~~e~~~ll~~aGf~~~~~~~~~~ 340 (350)
++.+++.++|+++||+++++..+..
T Consensus 210 ~~~~~l~~~l~~aGf~v~~~~~~~~ 234 (285)
T 4htf_A 210 RDPTQVYLWLEEAGWQIMGKTGVRV 234 (285)
T ss_dssp BCHHHHHHHHHHTTCEEEEEEEESS
T ss_pred CCHHHHHHHHHHCCCceeeeeeEEE
Confidence 6899999999999999999887643
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=130.56 Aligned_cols=135 Identities=19% Similarity=0.244 Sum_probs=102.1
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-CCC--CccEEEecchhccCChHHH
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-AIP--KADAVFMKWILHDWDDEAC 262 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~~~~~~ 262 (350)
+.+|||||||+|.++..+++. +++|. +.+++.+++. +++++.+|+.+ +++ .||+|++..++|++++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~-- 118 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP-- 118 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH--
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH--
Confidence 789999999999999988764 88998 8888887744 79999999987 554 49999999999998765
Q ss_pred HHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh-H-hhhcCCcccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 263 VKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV-M-FAHTTGGKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 263 ~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
..+|++++++|+ |||.+++.+...... ....+... . .....+...++.++|.++|+++||+++++...
T Consensus 119 ~~~l~~~~~~L~-pgG~l~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 119 ERALKEAYRILK-KGGYLIVGIVDRESF-------LGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHHEE-EEEEEEEEEECSSSH-------HHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHcC-CCcEEEEEEeCCccH-------HHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 578999999999 999999977543211 00000000 0 00011134568999999999999999988664
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-16 Score=139.15 Aligned_cols=151 Identities=15% Similarity=0.025 Sum_probs=106.9
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----C------------------------------
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----C------------------------------ 228 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~------------------------------ 228 (350)
..++.+|||||||+|.++..++.... .+++++|+ +.+++.+++ .
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 45678999999999988776555432 26899999 888886542 0
Q ss_pred -CCeE-EEeccCCC--CC-----CCccEEEecchhccCC--hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccc
Q 018775 229 -EGIF-HVGGDMFD--AI-----PKADAVFMKWILHDWD--DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGD 297 (350)
Q Consensus 229 -~~i~-~~~~d~~~--~~-----p~~D~i~~~~vlh~~~--~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~ 297 (350)
.++. ++.+|+.+ ++ +.||+|+++.+||+.. .++...+|++++++|| |||+|++.+...... +
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LK-PGG~li~~~~~~~~~----~-- 204 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLK-PGGHLVTTVTLRLPS----Y-- 204 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEEESSCCE----E--
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcC-CCcEEEEEEeecCcc----c--
Confidence 1243 88999987 22 3599999999999853 3567789999999999 999999986532110 0
Q ss_pred cchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcC----------CceeEEEEee
Q 018775 298 MGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMP----------ALYSIIEAYP 349 (350)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~----------~~~~vi~~~~ 349 (350)
... ..... ...++.+++.++|+++||+++++...+ ....++.|+|
T Consensus 205 ---~~g---~~~~~-~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K 259 (263)
T 2a14_A 205 ---MVG---KREFS-CVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARK 259 (263)
T ss_dssp ---EET---TEEEE-CCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEE
T ss_pred ---eeC---CeEee-ccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEe
Confidence 000 00011 223589999999999999999887643 1345677877
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=8.3e-16 Score=135.66 Aligned_cols=151 Identities=15% Similarity=0.054 Sum_probs=110.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---CC------------------------------
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---CE------------------------------ 229 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~------------------------------ 229 (350)
..++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 35678999999999999998888765 58999999 888887753 11
Q ss_pred --Ce-EEEeccCCC-CC------CCccEEEecchhccCCh--HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccc
Q 018775 230 --GI-FHVGGDMFD-AI------PKADAVFMKWILHDWDD--EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGD 297 (350)
Q Consensus 230 --~i-~~~~~d~~~-~~------p~~D~i~~~~vlh~~~~--~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~ 297 (350)
++ +++.+|+.+ +. ..||+|++..++|+++. ++...+|++++++|+ |||+|++.+..... . +
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~~~~~~---~-~-- 205 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLK-PGGFLVMVDALKSS---Y-Y-- 205 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEEESSCC---E-E--
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCC-CCcEEEEEecCCCc---e-E--
Confidence 27 899999987 22 24999999999995433 367789999999999 99999998843221 0 0
Q ss_pred cchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcCC----------ceeEEEEee
Q 018775 298 MGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPA----------LYSIIEAYP 349 (350)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~----------~~~vi~~~~ 349 (350)
...+ .... ....+.+++.++|+++||+++++...+. ...++.|+|
T Consensus 206 --~~~~----~~~~-~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K 260 (265)
T 2i62_A 206 --MIGE----QKFS-SLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRK 260 (265)
T ss_dssp --EETT----EEEE-CCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEEC
T ss_pred --EcCC----cccc-ccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEecc
Confidence 0000 0001 2345789999999999999999876541 345677776
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-15 Score=131.93 Aligned_cols=132 Identities=8% Similarity=-0.061 Sum_probs=105.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----------------------CCCeEEEeccCCC
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----------------------CEGIFHVGGDMFD 240 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~~i~~~~~d~~~ 240 (350)
.++.+|||+|||+|..+..|++. +.+++++|+ +.+++.|++ ..+|+++++|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 46789999999999999999987 568999999 888887632 2579999999998
Q ss_pred -CC---CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccC
Q 018775 241 -AI---PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKER 316 (350)
Q Consensus 241 -~~---p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (350)
+. ..||+|++..++|++++++...++++++++|+ |||+++++....+..... .+ ....
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lk-pGG~l~l~~~~~~~~~~~----------------g~-~~~~ 206 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLR-KEFQYLVAVLSYDPTKHA----------------GP-PFYV 206 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEE-EEEEEEEEEEECCTTSCC----------------CS-SCCC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcC-CCeEEEEEEEecCCccCC----------------CC-CCCC
Confidence 43 35999999999999998888899999999999 999998766554321100 01 1235
Q ss_pred CHHHHHHHHHhcCCceeEEEE
Q 018775 317 TEQEWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 317 s~~e~~~ll~~aGf~~~~~~~ 337 (350)
+.+++.++|++ +|+++.+..
T Consensus 207 ~~~el~~~l~~-~f~v~~~~~ 226 (252)
T 2gb4_A 207 PSAELKRLFGT-KCSMQCLEE 226 (252)
T ss_dssp CHHHHHHHHTT-TEEEEEEEE
T ss_pred CHHHHHHHhhC-CeEEEEEec
Confidence 78999999988 599877654
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-15 Score=132.50 Aligned_cols=146 Identities=14% Similarity=0.082 Sum_probs=104.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC--CccEEEecchh
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP--KADAVFMKWIL 254 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p--~~D~i~~~~vl 254 (350)
..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 567889999999999999999987 568999999 888877653 4689999999987 654 39999999999
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcC---CcccCCHHHHHHHHHhcCCc
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTT---GGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~~e~~~ll~~aGf~ 331 (350)
|++++. ..++++++++|+ |||++++. ...++... .......+..+......+ ....++.+++.++|+++||+
T Consensus 115 ~~~~~~--~~~l~~~~~~L~-pgG~l~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 189 (263)
T 2yqz_A 115 HLVPDW--PKVLAEAIRVLK-PGGALLEG-WDQAEASP-EWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLK 189 (263)
T ss_dssp GGCTTH--HHHHHHHHHHEE-EEEEEEEE-EEEECCCH-HHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred hhcCCH--HHHHHHHHHHCC-CCcEEEEE-ecCCCccH-HHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCC
Confidence 998764 578999999999 99999987 22221110 000000111111111011 12345789999999999999
Q ss_pred eeEEE
Q 018775 332 RCKII 336 (350)
Q Consensus 332 ~~~~~ 336 (350)
++.+.
T Consensus 190 ~~~~~ 194 (263)
T 2yqz_A 190 PRTRE 194 (263)
T ss_dssp CEEEE
T ss_pred cceEE
Confidence 87653
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.5e-15 Score=128.53 Aligned_cols=148 Identities=18% Similarity=0.179 Sum_probs=108.6
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC---CCC--CccE
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD---AIP--KADA 247 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~---~~p--~~D~ 247 (350)
..+++.++ .++.+|||||||+|.++..+++. + .+++++|+ +.+++.+++. ..+++.+|+.+ +++ .||+
T Consensus 23 ~~l~~~~~---~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~fD~ 96 (230)
T 3cc8_A 23 PNLLKHIK---KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEK-LDHVVLGDIETMDMPYEEEQFDC 96 (230)
T ss_dssp HHHHTTCC---TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTT-SSEEEESCTTTCCCCSCTTCEEE
T ss_pred HHHHHHhc---cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHh-CCcEEEcchhhcCCCCCCCccCE
Confidence 34444443 46789999999999999999988 4 89999999 8888887742 24788899875 333 4999
Q ss_pred EEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhh---------hcCCcccCCH
Q 018775 248 VFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFA---------HTTGGKERTE 318 (350)
Q Consensus 248 i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~s~ 318 (350)
|++..++||+++. ..+|++++++|+ |||.+++..+...... ......... ...+...++.
T Consensus 97 v~~~~~l~~~~~~--~~~l~~~~~~L~-~gG~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (230)
T 3cc8_A 97 VIFGDVLEHLFDP--WAVIEKVKPYIK-QNGVILASIPNVSHIS--------VLAPLLAGNWTYTEYGLLDKTHIRFFTF 165 (230)
T ss_dssp EEEESCGGGSSCH--HHHHHHTGGGEE-EEEEEEEEEECTTSHH--------HHHHHHTTCCCCBSSSTTBTTCCCCCCH
T ss_pred EEECChhhhcCCH--HHHHHHHHHHcC-CCCEEEEEeCCcchHH--------HHHHHhcCCceeccCCCCCcceEEEecH
Confidence 9999999998876 488999999999 9999999765432110 000000000 0011245689
Q ss_pred HHHHHHHHhcCCceeEEEEc
Q 018775 319 QEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 319 ~e~~~ll~~aGf~~~~~~~~ 338 (350)
++|.++++++||+++++...
T Consensus 166 ~~~~~~l~~~Gf~~~~~~~~ 185 (230)
T 3cc8_A 166 NEMLRMFLKAGYSISKVDRV 185 (230)
T ss_dssp HHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHcCCeEEEEEec
Confidence 99999999999999988775
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.6e-15 Score=125.50 Aligned_cols=131 Identities=14% Similarity=0.146 Sum_probs=102.2
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCCCCeEEEeccCCC-CCC--CccEEEec
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFD-AIP--KADAVFMK 251 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~~p--~~D~i~~~ 251 (350)
.+++.+. ...++.+|||||||+|.++..+. .+++++|+.+. +++++.+|+.+ +++ .||+|++.
T Consensus 57 ~~~~~l~-~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~ 122 (215)
T 2zfu_A 57 RIARDLR-QRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFC 122 (215)
T ss_dssp HHHHHHH-TSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred HHHHHHh-ccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEe
Confidence 3444443 13467899999999999998773 57899998322 57789999988 654 39999999
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
.++|+ + +...+|++++++|+ |||++++.+... ...+.++|.++++++||+
T Consensus 123 ~~l~~-~--~~~~~l~~~~~~L~-~gG~l~i~~~~~--------------------------~~~~~~~~~~~l~~~Gf~ 172 (215)
T 2zfu_A 123 LSLMG-T--NIRDFLEEANRVLK-PGGLLKVAEVSS--------------------------RFEDVRTFLRAVTKLGFK 172 (215)
T ss_dssp SCCCS-S--CHHHHHHHHHHHEE-EEEEEEEEECGG--------------------------GCSCHHHHHHHHHHTTEE
T ss_pred hhccc-c--CHHHHHHHHHHhCC-CCeEEEEEEcCC--------------------------CCCCHHHHHHHHHHCCCE
Confidence 99984 3 34688999999999 999999986321 111689999999999999
Q ss_pred eeEEEEcCCceeEEEEee
Q 018775 332 RCKIISMPALYSIIEAYP 349 (350)
Q Consensus 332 ~~~~~~~~~~~~vi~~~~ 349 (350)
++++...++.+.++.++|
T Consensus 173 ~~~~~~~~~~~~~~~~~k 190 (215)
T 2zfu_A 173 IVSKDLTNSHFFLFDFQK 190 (215)
T ss_dssp EEEEECCSTTCEEEEEEE
T ss_pred EEEEecCCCeEEEEEEEe
Confidence 998777677778888877
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=8e-15 Score=131.98 Aligned_cols=140 Identities=16% Similarity=0.135 Sum_probs=103.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC--------CCCeEEEeccCCC-CC--------CCc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV--------CEGIFHVGGDMFD-AI--------PKA 245 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~-~~--------p~~ 245 (350)
.++.+|||||||+|..+..+++.+ +..+++++|+ +.+++.+++ ..+++++.+|+.+ ++ ..|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 578999999999999999999987 8899999999 888887754 4689999999998 43 249
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhh--hcCCccc--CCHHHH
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFA--HTTGGKE--RTEQEW 321 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~s~~e~ 321 (350)
|+|++..++|++ +...++++++++|+ |||.|++.+...+.....+ .....+.-.... ..+ ... ...+.+
T Consensus 115 D~V~~~~~l~~~---~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~w~~p~~~~~ 187 (299)
T 3g5t_A 115 DMITAVECAHWF---DFEKFQRSAYANLR-KDGTIAIWGYADPIFPDYP--EFDDLMIEVPYGKQGLG-PYWEQPGRSRL 187 (299)
T ss_dssp EEEEEESCGGGS---CHHHHHHHHHHHEE-EEEEEEEEEEEEEECTTCG--GGTTHHHHHHHCTTTTG-GGSCTTHHHHH
T ss_pred eEEeHhhHHHHh---CHHHHHHHHHHhcC-CCcEEEEEecCCccccCcH--HHHHHHHHhccCccccc-chhhchhhHHH
Confidence 999999999998 35689999999999 9999999665543222111 011111111110 011 111 346677
Q ss_pred HHHHHhcCCc
Q 018775 322 MKLLEQGGFH 331 (350)
Q Consensus 322 ~~ll~~aGf~ 331 (350)
.++++++||.
T Consensus 188 ~~~l~~~gfp 197 (299)
T 3g5t_A 188 RNMLKDSHLD 197 (299)
T ss_dssp HTTTTTCCCC
T ss_pred HHhhhccCCC
Confidence 9999999993
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.7e-15 Score=130.88 Aligned_cols=97 Identities=14% Similarity=0.140 Sum_probs=85.2
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-CCCC--ccEEEecchhccCChHH
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-AIPK--ADAVFMKWILHDWDDEA 261 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~p~--~D~i~~~~vlh~~~~~~ 261 (350)
...+|||||||+|.++..|++.+ .+++++|+ +.+++.+++..+|+++.+|+.+ ++++ ||+|++..++|+++.+
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~- 115 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD- 115 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH-
T ss_pred CCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH-
Confidence 46799999999999999999875 47899999 9999999988899999999998 7763 9999999999987643
Q ss_pred HHHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 262 CVKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 262 ~~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
+++++++++|| |||+|+++....+
T Consensus 116 --~~~~e~~rvLk-pgG~l~~~~~~~~ 139 (257)
T 4hg2_A 116 --RFWAELRRVAR-PGAVFAAVTYGLT 139 (257)
T ss_dssp --HHHHHHHHHEE-EEEEEEEEEECCC
T ss_pred --HHHHHHHHHcC-CCCEEEEEECCCC
Confidence 67999999999 9999999876543
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.2e-15 Score=132.33 Aligned_cols=153 Identities=12% Similarity=0.091 Sum_probs=109.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CC-C--CccEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AI-P--KADAVFMKW 252 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~-p--~~D~i~~~~ 252 (350)
.++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+ ++ + .||+|++..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 56789999999999999998876 4568999999 888887764 2479999999998 55 3 399999999
Q ss_pred hhcc--CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCC---------CCc----c------cc-cchhhhhhHhhhc
Q 018775 253 ILHD--WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDG---------NNI----F------GD-MGLVFDLVMFAHT 310 (350)
Q Consensus 253 vlh~--~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~---------~~~----~------~~-~~~~~~~~~~~~~ 310 (350)
++|+ .+.++...+|++++++|+ |||++++..+...... ... + .. ....+.+......
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 220 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLR-PGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSV 220 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEE-EEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSC
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcC-CCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhh
Confidence 9998 667778899999999999 9999999775432100 000 0 00 0000000000000
Q ss_pred C--CcccCCHHHHHHHHHhcCCceeEEEEcC
Q 018775 311 T--GGKERTEQEWMKLLEQGGFHRCKIISMP 339 (350)
Q Consensus 311 ~--~~~~~s~~e~~~ll~~aGf~~~~~~~~~ 339 (350)
. ....++.++|.++++++||+++++..++
T Consensus 221 ~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~ 251 (298)
T 1ri5_A 221 NNCIEYFVDFTRMVDGFKRLGLSLVERKGFI 251 (298)
T ss_dssp SSEEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred cCCcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence 0 0234589999999999999999987653
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=129.79 Aligned_cols=139 Identities=16% Similarity=0.080 Sum_probs=108.1
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC-CccE
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP-KADA 247 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p-~~D~ 247 (350)
+++.++ ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+
T Consensus 112 ~~~~~~--~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 187 (286)
T 3m70_A 112 VVDAAK--IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDF 187 (286)
T ss_dssp HHHHHH--HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEE
T ss_pred HHHHhh--ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccE
Confidence 344444 346889999999999999999987 568999999 888887764 2389999999998 444 4999
Q ss_pred EEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHh
Q 018775 248 VFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQ 327 (350)
Q Consensus 248 i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~ 327 (350)
|++..++||+++++...++++++++|+ |||.++++..........+ ... ...++.+++.++++.
T Consensus 188 i~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~--------------~~~-~~~~~~~~l~~~~~~ 251 (286)
T 3m70_A 188 IVSTVVFMFLNRERVPSIIKNMKEHTN-VGGYNLIVAAMSTDDVPCP--------------LPF-SFTFAENELKEYYKD 251 (286)
T ss_dssp EEECSSGGGSCGGGHHHHHHHHHHTEE-EEEEEEEEEEBCCSSSCCS--------------SCC-SCCBCTTHHHHHTTT
T ss_pred EEEccchhhCCHHHHHHHHHHHHHhcC-CCcEEEEEEecCCCCCCCC--------------CCc-cccCCHHHHHHHhcC
Confidence 999999999999888999999999999 9999888776554432210 001 234467888888865
Q ss_pred cCCceeEEE
Q 018775 328 GGFHRCKII 336 (350)
Q Consensus 328 aGf~~~~~~ 336 (350)
|+++...
T Consensus 252 --~~~~~~~ 258 (286)
T 3m70_A 252 --WEFLEYN 258 (286)
T ss_dssp --SEEEEEE
T ss_pred --CEEEEEE
Confidence 8887764
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.3e-15 Score=127.01 Aligned_cols=149 Identities=9% Similarity=-0.002 Sum_probs=108.1
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC--CccEEEecchh
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP--KADAVFMKWIL 254 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p--~~D~i~~~~vl 254 (350)
..++.+|||||||+|..+..++.. ++.+++++|. +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 456789999999999986555544 5679999999 888887764 3679999999988 654 39999999999
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCccccc-chhhhhhHhhhcC-CcccCCHHHHHHHHHhcCCce
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDM-GLVFDLVMFAHTT-GGKERTEQEWMKLLEQGGFHR 332 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~s~~e~~~ll~~aGf~~ 332 (350)
||++.++...++++++++|+ |||++++.+...++......... ...+.. .....+ ....++.+++.++|+++||..
T Consensus 100 ~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~g~~~ 177 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLK-PGGLACINFLTTKDERYNKGEKIGEGEFLQ-LERGEKVIHSYVSLEEADKYFKDMKVLF 177 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEETTSTTTTCSEEEETTEEEE-CC-CCCEEEEEECHHHHHHTTTTSEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcC-CCcEEEEEEecccchhccchhhhcccccee-ccCCCceeEEecCHHHHHHHHhhcCcee
Confidence 99987888899999999999 99999998887655332100000 000000 000000 024558999999999999876
Q ss_pred eEE
Q 018775 333 CKI 335 (350)
Q Consensus 333 ~~~ 335 (350)
.+.
T Consensus 178 ~~~ 180 (209)
T 2p8j_A 178 KED 180 (209)
T ss_dssp EEE
T ss_pred eee
Confidence 654
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=8.8e-15 Score=131.26 Aligned_cols=140 Identities=14% Similarity=0.097 Sum_probs=96.1
Q ss_pred CCcceEEEecCCchHHHHH----HHHHCCCCcE--EEecc-hhHhhhCCC-------CCCeEE--EeccCCC-C------
Q 018775 185 DSIQSLADVGGGTGGALAE----IVKSYPHIKG--INFDL-PHVVATAPV-------CEGIFH--VGGDMFD-A------ 241 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~----l~~~~p~~~~--~~~D~-~~~~~~a~~-------~~~i~~--~~~d~~~-~------ 241 (350)
.++.+|||||||+|.++.. ++.++|+.++ +++|. ++|++.+++ ..++++ ..++..+ +
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 4578999999999986654 4556688754 99999 888886653 134444 4555443 2
Q ss_pred CC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcC---CcccC
Q 018775 242 IP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTT---GGKER 316 (350)
Q Consensus 242 ~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 316 (350)
++ .||+|++.++|||+++. .+.|++++++|| |||++++.+.... . . ....+.- .....+ ....+
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lk-pgG~l~i~~~~~~--~--~---~~~~~~~-~~~~~~~~~~~~~~ 199 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLG-TNAKMLIIVVSGS--S--G---WDKLWKK-YGSRFPQDDLCQYI 199 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEE-EEEEEEEEEECTT--S--H---HHHHHHH-HGGGSCCCTTCCCC
T ss_pred cCCCceeEEEEeeeeeecCCH--HHHHHHHHHHcC-CCcEEEEEEecCC--c--c---HHHHHHH-HHHhccCCCcccCC
Confidence 22 49999999999999876 468999999999 9999999864321 1 0 0011111 111111 12456
Q ss_pred CHHHHHHHHHhcCCceeEE
Q 018775 317 TEQEWMKLLEQGGFHRCKI 335 (350)
Q Consensus 317 s~~e~~~ll~~aGf~~~~~ 335 (350)
+.++|.++|+++||+++..
T Consensus 200 ~~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 200 TSDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp CHHHHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHHHCCCceEEE
Confidence 8999999999999998764
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=136.94 Aligned_cols=151 Identities=13% Similarity=0.109 Sum_probs=108.4
Q ss_pred hHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCC-----C-CC--
Q 018775 172 VMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMF-----D-AI-- 242 (350)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~-----~-~~-- 242 (350)
.+..+++.+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+......+. . ++
T Consensus 95 ~~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~ 169 (416)
T 4e2x_A 95 LARDFLATEL--TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTE 169 (416)
T ss_dssp HHHHHHHTTT--CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCC
Confidence 3456667776 677899999999999999999986 458999999 8888888753 2333332222 1 22
Q ss_pred CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH
Q 018775 243 PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM 322 (350)
Q Consensus 243 p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~ 322 (350)
..||+|++.+++||+++. ..+|++++++|+ |||++++......... ....+... ...+...++.++|.
T Consensus 170 ~~fD~I~~~~vl~h~~d~--~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~--------~~~~~~~~-~~~~~~~~s~~~l~ 237 (416)
T 4e2x_A 170 GPANVIYAANTLCHIPYV--QSVLEGVDALLA-PDGVFVFEDPYLGDIV--------AKTSFDQI-FDEHFFLFSATSVQ 237 (416)
T ss_dssp CCEEEEEEESCGGGCTTH--HHHHHHHHHHEE-EEEEEEEEEECHHHHH--------HHTCGGGC-STTCCEECCHHHHH
T ss_pred CCEEEEEECChHHhcCCH--HHHHHHHHHHcC-CCeEEEEEeCChHHhh--------hhcchhhh-hhhhhhcCCHHHHH
Confidence 249999999999999854 688999999999 9999998654432110 00000000 01224557899999
Q ss_pred HHHHhcCCceeEEEEcC
Q 018775 323 KLLEQGGFHRCKIISMP 339 (350)
Q Consensus 323 ~ll~~aGf~~~~~~~~~ 339 (350)
++++++||+++++...+
T Consensus 238 ~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 238 GMAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHHTTEEEEEEEEEC
T ss_pred HHHHHcCCEEEEEEEcc
Confidence 99999999999998865
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.4e-14 Score=125.27 Aligned_cols=142 Identities=23% Similarity=0.265 Sum_probs=104.0
Q ss_pred CCcceEEEecCCc--hHHHHHHHH-HCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC-----C----Cc
Q 018775 185 DSIQSLADVGGGT--GGALAEIVK-SYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI-----P----KA 245 (350)
Q Consensus 185 ~~~~~vLDvG~G~--G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~-----p----~~ 245 (350)
.+..+|||||||+ +..+..+++ ..|+.+++++|. |.|++.++. ..+++|+.+|+.++. | .+
T Consensus 77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~ 156 (277)
T 3giw_A 77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTL 156 (277)
T ss_dssp SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccccc
Confidence 3568999999997 444555554 589999999999 999998875 247999999998731 1 25
Q ss_pred c-----EEEecchhccCChHH-HHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHH
Q 018775 246 D-----AVFMKWILHDWDDEA-CVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQ 319 (350)
Q Consensus 246 D-----~i~~~~vlh~~~~~~-~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 319 (350)
| +++++.+|||+++.+ ...+|++++++|+ |||+|++.+...+.... ....+.+.......+ ...||.+
T Consensus 157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~-PGG~Lvls~~~~d~~p~----~~~~~~~~~~~~g~p-~~~rs~~ 230 (277)
T 3giw_A 157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLP-SGSYLAMSIGTAEFAPQ----EVGRVAREYAARNMP-MRLRTHA 230 (277)
T ss_dssp CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSC-TTCEEEEEEECCTTSHH----HHHHHHHHHHHTTCC-CCCCCHH
T ss_pred CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCC-CCcEEEEEeccCCCCHH----HHHHHHHHHHhcCCC-CccCCHH
Confidence 5 688999999999876 5789999999999 99999998876542211 011222222222223 4568999
Q ss_pred HHHHHHHhcCCceeE
Q 018775 320 EWMKLLEQGGFHRCK 334 (350)
Q Consensus 320 e~~~ll~~aGf~~~~ 334 (350)
|+..+|. ||..++
T Consensus 231 ei~~~f~--Glelve 243 (277)
T 3giw_A 231 EAEEFFE--GLELVE 243 (277)
T ss_dssp HHHHTTT--TSEECT
T ss_pred HHHHHhC--CCcccC
Confidence 9999995 998655
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-14 Score=123.08 Aligned_cols=142 Identities=17% Similarity=0.228 Sum_probs=104.0
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhC----CCCCCeEEEeccCCCC-----C-CCccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATA----PVCEGIFHVGGDMFDA-----I-PKADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~~~i~~~~~d~~~~-----~-p~~D~i~~~~ 252 (350)
..++.+|||||||+|.++..+++.++..+++++|. +.+++.+ +...++.++.+|+.++ + ..||+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 56788999999999999999999988789999999 8777654 3357899999999862 2 2499998
Q ss_pred hhccCChH-HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 253 ILHDWDDE-ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 253 vlh~~~~~-~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
|++++. ....++++++++|+ |||++++. .........+ . ......+++. +|+++||+
T Consensus 149 --~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~-~~~~~~~~~~--------~---------~~~~~~~~l~-~l~~~Gf~ 206 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLK-KGGYGMIA-IKARSIDVTK--------D---------PKEIFKEQKE-ILEAGGFK 206 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEE-EEEEEEEE-EEGGGTCSSS--------C---------HHHHHHHHHH-HHHHHTEE
T ss_pred --EecCChhHHHHHHHHHHHhCC-CCcEEEEE-EecCCCCCCC--------C---------HHHhhHHHHH-HHHHCCCE
Confidence 555443 34567999999999 99999997 2211111100 0 0011137777 89999999
Q ss_pred eeEEEEcCCc---eeEEEEeeC
Q 018775 332 RCKIISMPAL---YSIIEAYPQ 350 (350)
Q Consensus 332 ~~~~~~~~~~---~~vi~~~~~ 350 (350)
.+++..+..+ +.++.++|.
T Consensus 207 ~~~~~~~~~~~~~~~~v~~~k~ 228 (230)
T 1fbn_A 207 IVDEVDIEPFEKDHVMFVGIWE 228 (230)
T ss_dssp EEEEEECTTTSTTEEEEEEEEC
T ss_pred EEEEEccCCCccceEEEEEEeC
Confidence 9999887654 677777763
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.54 E-value=6.4e-14 Score=122.68 Aligned_cols=104 Identities=20% Similarity=0.274 Sum_probs=85.0
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC-Ccc
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP-KAD 246 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p-~~D 246 (350)
.++.... ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||
T Consensus 32 ~~~~~~~--~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 107 (252)
T 1wzn_A 32 EIFKEDA--KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFD 107 (252)
T ss_dssp HHHHHTC--SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEE
T ss_pred HHHHHhc--ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCcc
Confidence 3344444 456789999999999999999986 568999999 888887764 3479999999988 554 499
Q ss_pred EEEec-chhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 247 AVFMK-WILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 247 ~i~~~-~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
+|++. ..+++++.++...+|++++++|+ |||.+++.
T Consensus 108 ~v~~~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~li~~ 144 (252)
T 1wzn_A 108 AVTMFFSTIMYFDEEDLRKLFSKVAEALK-PGGVFITD 144 (252)
T ss_dssp EEEECSSGGGGSCHHHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred EEEEcCCchhcCCHHHHHHHHHHHHHHcC-CCeEEEEe
Confidence 99986 56677777788899999999999 99998864
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.3e-14 Score=119.51 Aligned_cols=133 Identities=11% Similarity=0.022 Sum_probs=101.7
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC--CccEEEecchhcc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP--KADAVFMKWILHD 256 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~ 256 (350)
++ +|||||||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+ +++ .||+|++. ++|
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~ 104 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCH 104 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCC
T ss_pred CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhc
Confidence 45 9999999999999999886 568999999 888887765 2489999999998 554 49999985 345
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEE
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII 336 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~ 336 (350)
++.++...+|++++++|+ |||++++.+......... ... .... ...++.+++.++|+ ||+++++.
T Consensus 105 ~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~--------~~~---~~~~-~~~~~~~~l~~~l~--Gf~v~~~~ 169 (202)
T 2kw5_A 105 LPSSLRQQLYPKVYQGLK-PGGVFILEGFAPEQLQYN--------TGG---PKDL-DLLPKLETLQSELP--SLNWLIAN 169 (202)
T ss_dssp CCHHHHHHHHHHHHTTCC-SSEEEEEEEECTTTGGGT--------SCC---SSSG-GGCCCHHHHHHHCS--SSCEEEEE
T ss_pred CCHHHHHHHHHHHHHhcC-CCcEEEEEEeccccccCC--------CCC---CCcc-eeecCHHHHHHHhc--CceEEEEE
Confidence 677778899999999999 999999987654332100 000 0001 24568999999999 99998875
Q ss_pred Ec
Q 018775 337 SM 338 (350)
Q Consensus 337 ~~ 338 (350)
..
T Consensus 170 ~~ 171 (202)
T 2kw5_A 170 NL 171 (202)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=5.3e-15 Score=132.51 Aligned_cols=139 Identities=16% Similarity=0.093 Sum_probs=97.7
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--C---------------------------------
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--C--------------------------------- 228 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~--------------------------------- 228 (350)
.++.+|||||||+|.+.. ++...+..+++++|+ +.+++.+++ .
T Consensus 70 ~~~~~vLDiGcG~G~~~~-l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQL-LSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp SCCSEEEEETCTTCCGGG-TTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHH-HhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 367899999999999543 343334569999999 888876543 0
Q ss_pred -CCeEEEeccCCC--C-----CCC--ccEEEecchhccCChH--HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCccc
Q 018775 229 -EGIFHVGGDMFD--A-----IPK--ADAVFMKWILHDWDDE--ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFG 296 (350)
Q Consensus 229 -~~i~~~~~d~~~--~-----~p~--~D~i~~~~vlh~~~~~--~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~ 296 (350)
..++++.+|+.+ + +++ ||+|++..+||+++.+ +...+|++++++|+ |||+|++.+.....
T Consensus 149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lk-pGG~l~~~~~~~~~------- 220 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLR-PGGHLLLIGALEES------- 220 (289)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEEEESCC-------
T ss_pred hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcC-CCCEEEEEEecCcc-------
Confidence 014566678876 2 222 9999999999996533 67789999999999 99999998633211
Q ss_pred ccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 297 DMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
.....+ .... ...++.++|.++|+++||+++++...
T Consensus 221 -~~~~~~----~~~~-~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 221 -WYLAGE----ARLT-VVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp -EEEETT----EEEE-CCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred -eEEcCC----eeee-eccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 000000 0011 23458999999999999999887654
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=8.5e-15 Score=131.28 Aligned_cols=100 Identities=18% Similarity=0.101 Sum_probs=84.9
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC-C---CC--Ccc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD-A---IP--KAD 246 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~-~---~p--~~D 246 (350)
..++.+|||||||+|..+..+++.. .+++++|+ +.+++.+++ ..++.+..+|+.+ + ++ .||
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD 132 (293)
T 3thr_A 55 QHGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 132 (293)
T ss_dssp HTTCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeE
Confidence 3467899999999999999999984 48999999 888887743 2578899999887 5 44 499
Q ss_pred EEEec-chhccCCh-----HHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 247 AVFMK-WILHDWDD-----EACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 247 ~i~~~-~vlh~~~~-----~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
+|++. +++||+++ ++...+|++++++|+ |||++++....
T Consensus 133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~ 177 (293)
T 3thr_A 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVR-PGGLLVIDHRN 177 (293)
T ss_dssp EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEE-EEEEEEEEEEC
T ss_pred EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcC-CCeEEEEEeCC
Confidence 99998 99999988 677899999999999 99999987643
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-13 Score=117.43 Aligned_cols=124 Identities=16% Similarity=0.257 Sum_probs=99.6
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC---CC
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI---PK 244 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---p~ 244 (350)
.++..+. ..++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ .++++++.+|+.+.. +.
T Consensus 31 ~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (204)
T 3e05_A 31 VTLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD 108 (204)
T ss_dssp HHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred HHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence 3445555 67789999999999999999999999999999999 888887764 368999999997732 45
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKL 324 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~l 324 (350)
||+|++...++ +...++++++++|+ |||++++...... +.+++.++
T Consensus 109 ~D~i~~~~~~~-----~~~~~l~~~~~~Lk-pgG~l~~~~~~~~----------------------------~~~~~~~~ 154 (204)
T 3e05_A 109 PDRVFIGGSGG-----MLEEIIDAVDRRLK-SEGVIVLNAVTLD----------------------------TLTKAVEF 154 (204)
T ss_dssp CSEEEESCCTT-----CHHHHHHHHHHHCC-TTCEEEEEECBHH----------------------------HHHHHHHH
T ss_pred CCEEEECCCCc-----CHHHHHHHHHHhcC-CCeEEEEEecccc----------------------------cHHHHHHH
Confidence 99999988776 34578999999999 9999998542210 25778889
Q ss_pred HHhcCCceeEE
Q 018775 325 LEQGGFHRCKI 335 (350)
Q Consensus 325 l~~aGf~~~~~ 335 (350)
++++|| .+++
T Consensus 155 l~~~g~-~~~~ 164 (204)
T 3e05_A 155 LEDHGY-MVEV 164 (204)
T ss_dssp HHHTTC-EEEE
T ss_pred HHHCCC-ceeE
Confidence 999998 4443
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.8e-15 Score=126.30 Aligned_cols=100 Identities=14% Similarity=0.190 Sum_probs=85.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCC-CccEEEecchhcc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIP-KADAVFMKWILHD 256 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh~ 256 (350)
..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..++||
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 5678899999999999999999885 48999999 888877654 4589999999998 422 4999999999999
Q ss_pred CCh-HHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 257 WDD-EACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 257 ~~~-~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
+++ +....+|++++++|+ |||.+++....
T Consensus 127 ~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~ 156 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLA-PGGHLVFGSAR 156 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEE-EEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcC-CCCEEEEEecC
Confidence 986 456689999999999 99999986653
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.5e-14 Score=119.24 Aligned_cols=130 Identities=12% Similarity=0.103 Sum_probs=105.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC-CCccEEEecchhcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI-PKADAVFMKWILHD 256 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~-p~~D~i~~~~vlh~ 256 (350)
.++.+|||||||+|.++..+++ .+..+++++|+ +.+++.+++ ..+++++.+|+.+.. ..||+|++...+|+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 4678999999999999999776 46679999999 888887764 223999999998843 35999999887775
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEE
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII 336 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~ 336 (350)
...++++++++|+ |||++++.+.... +.+++.++++++||+.+++.
T Consensus 138 -----~~~~l~~~~~~L~-~gG~l~~~~~~~~----------------------------~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 138 -----LLDLIPQLDSHLN-EDGQVIFSGIDYL----------------------------QLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp -----HHHHGGGSGGGEE-EEEEEEEEEEEGG----------------------------GHHHHHHHHHHTTEEEEEEE
T ss_pred -----HHHHHHHHHHhcC-CCCEEEEEecCcc----------------------------cHHHHHHHHHHcCCceEEee
Confidence 4678999999999 9999998543321 26788899999999999988
Q ss_pred EcCCceeEEEEee
Q 018775 337 SMPALYSIIEAYP 349 (350)
Q Consensus 337 ~~~~~~~vi~~~~ 349 (350)
..+....++.-+|
T Consensus 184 ~~~~w~~~~~~~~ 196 (205)
T 3grz_A 184 RAGRWIGLAISRK 196 (205)
T ss_dssp EETTEEEEEEEEC
T ss_pred ccCCEEEEEEecc
Confidence 8777777766554
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-13 Score=121.44 Aligned_cols=135 Identities=18% Similarity=0.190 Sum_probs=107.7
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC--CCccEEEec----
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI--PKADAVFMK---- 251 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~--p~~D~i~~~---- 251 (350)
.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.++. ..||+|+++
T Consensus 108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~ 187 (276)
T 2b3t_A 108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 187 (276)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCC
Confidence 3567999999999999999999999999999999 888887764 247999999999854 259999997
Q ss_pred ---------chhccCCh----------HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCC
Q 018775 252 ---------WILHDWDD----------EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTG 312 (350)
Q Consensus 252 ---------~vlh~~~~----------~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (350)
.+++|.|. .....+++++++.|+ |||++++.. +
T Consensus 188 ~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lk-pgG~l~~~~--------------------------~- 239 (276)
T 2b3t_A 188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALV-SGGFLLLEH--------------------------G- 239 (276)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEE-EEEEEEEEC--------------------------C-
T ss_pred CccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcC-CCCEEEEEE--------------------------C-
Confidence 35554442 345789999999999 999998741 0
Q ss_pred cccCCHHHHHHHHHhcCCceeEEEE-cCCceeEEEEee
Q 018775 313 GKERTEQEWMKLLEQGGFHRCKIIS-MPALYSIIEAYP 349 (350)
Q Consensus 313 ~~~~s~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~ 349 (350)
..+.+++.++++++||+.++++. ..+...++.+++
T Consensus 240 --~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 240 --WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp --SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred --chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 11368899999999999888766 466677777765
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.7e-14 Score=121.64 Aligned_cols=136 Identities=15% Similarity=0.125 Sum_probs=91.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCC-------CCccEEEec
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAI-------PKADAVFMK 251 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~-------p~~D~i~~~ 251 (350)
.++.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+++ ..||+|+++
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n 108 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN 108 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence 5788999999999999999999999999999999 889988875 116889999988732 359999995
Q ss_pred chh------ccCChHHH------------------HHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHh
Q 018775 252 WIL------HDWDDEAC------------------VKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMF 307 (350)
Q Consensus 252 ~vl------h~~~~~~~------------------~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~ 307 (350)
... ++++.+.. ..++++++++|+ |||++++++..
T Consensus 109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~--------------------- 166 (215)
T 4dzr_A 109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLA-RGRAGVFLEVG--------------------- 166 (215)
T ss_dssp CCCCC------------------------CTTHHHHHHHTCCGGGBC-SSSEEEEEECT---------------------
T ss_pred CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhc-CCCeEEEEEEC---------------------
Confidence 333 33332222 688999999999 99996654421
Q ss_pred hhcCCcccCCHHHHHHHHH--hcCCceeEEEEc-CCceeEEEEee
Q 018775 308 AHTTGGKERTEQEWMKLLE--QGGFHRCKIISM-PALYSIIEAYP 349 (350)
Q Consensus 308 ~~~~~~~~~s~~e~~~ll~--~aGf~~~~~~~~-~~~~~vi~~~~ 349 (350)
....+++.++++ +.||..+++.+. .+...++.++|
T Consensus 167 -------~~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~ 204 (215)
T 4dzr_A 167 -------HNQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTR 204 (215)
T ss_dssp -------TSCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEE
T ss_pred -------CccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEE
Confidence 112577888899 999999888775 44556666665
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.3e-13 Score=111.09 Aligned_cols=128 Identities=18% Similarity=0.163 Sum_probs=100.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCCCC--CccEEEecchhccCChH-
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDAIP--KADAVFMKWILHDWDDE- 260 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~p--~~D~i~~~~vlh~~~~~- 260 (350)
.++.+|||||||+|.++..+++.. +++++|+ +.+++. ..+++++.+|+.++.+ .||+|+++..+|..++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCccc
Confidence 346699999999999999999986 8999999 888887 5679999999998654 49999998888865443
Q ss_pred ------HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeE
Q 018775 261 ------ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCK 334 (350)
Q Consensus 261 ------~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~ 334 (350)
+...+++++.+.+ |||++++.+... .+.+++.++++++||+.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l--pgG~l~~~~~~~----------------------------~~~~~l~~~l~~~gf~~~~ 145 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV--TVGMLYLLVIEA----------------------------NRPKEVLARLEERGYGTRI 145 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC--CSSEEEEEEEGG----------------------------GCHHHHHHHHHHTTCEEEE
T ss_pred cccCCcchHHHHHHHHhhC--CCCEEEEEEecC----------------------------CCHHHHHHHHHHCCCcEEE
Confidence 3457888888888 799998866211 1368889999999999988
Q ss_pred EEEc-CCceeEEEEe
Q 018775 335 IISM-PALYSIIEAY 348 (350)
Q Consensus 335 ~~~~-~~~~~vi~~~ 348 (350)
+... .+...++..+
T Consensus 146 ~~~~~~~~e~~~~~~ 160 (170)
T 3q87_B 146 LKVRKILGETVYIIK 160 (170)
T ss_dssp EEEEECSSSEEEEEE
T ss_pred EEeeccCCceEEEEE
Confidence 8765 3334444433
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.8e-14 Score=118.86 Aligned_cols=142 Identities=8% Similarity=0.027 Sum_probs=96.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhh----CCC------CCCeEEEeccCCC-CCCC-ccEEE-
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVAT----APV------CEGIFHVGGDMFD-AIPK-ADAVF- 249 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~------~~~i~~~~~d~~~-~~p~-~D~i~- 249 (350)
..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ ..+++++.+|+.+ +++. .|.|.
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~ 104 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV 104 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence 56788999999999999999999999999999999 776664 221 3489999999998 5541 25554
Q ss_pred --ecchhc--cCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcC-CcccCCHHHHHHH
Q 018775 250 --MKWILH--DWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTT-GGKERTEQEWMKL 324 (350)
Q Consensus 250 --~~~vlh--~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~l 324 (350)
....+| |+++. ..+|++++++|+ |||++++......-.... . ... ..+ ....+..+++.++
T Consensus 105 ~~~~~~~~~~~~~~~--~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~-----~---~~~---~~~~~~~~~~~~~l~~~ 170 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSS--PEMLRGMAAVCR-PGASFLVALNLHAWRPSV-----P---EVG---EHPEPTPDSADEWLAPR 170 (218)
T ss_dssp ESCCHHHHHHHHTSS--SHHHHHHHHTEE-EEEEEEEEEEGGGBTTBC-----G---GGT---TCCCCCHHHHHHHHHHH
T ss_pred EccchhhhhhhhccH--HHHHHHHHHHcC-CCcEEEEEeccccccccc-----c---ccc---cCCccchHHHHHHHHHH
Confidence 223332 44433 578999999999 999999833221111100 0 000 000 0111234568889
Q ss_pred HHhcCCceeEEEEcC
Q 018775 325 LEQGGFHRCKIISMP 339 (350)
Q Consensus 325 l~~aGf~~~~~~~~~ 339 (350)
++++||++.++..+.
T Consensus 171 l~~aGf~i~~~~~~~ 185 (218)
T 3mq2_A 171 YAEAGWKLADCRYLE 185 (218)
T ss_dssp HHHTTEEEEEEEEEC
T ss_pred HHHcCCCceeeeccc
Confidence 999999999887653
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.1e-14 Score=128.27 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=91.7
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---------------CCCeEEEecc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---------------CEGIFHVGGD 237 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~i~~~~~d 237 (350)
..+++.+. ..++.+|||||||+|.+++.++...+..+++++|+ +.+++.|+. ..+|+++.+|
T Consensus 163 ~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 163 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 34555565 77889999999999999999998887667999999 776665542 2689999999
Q ss_pred CCC-CC----CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCC
Q 018775 238 MFD-AI----PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGN 292 (350)
Q Consensus 238 ~~~-~~----p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~ 292 (350)
+.+ ++ +.+|+|+++++++ .++....|++++++|+ |||+|++.|.+.+.+..
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F---~pdl~~aL~Ei~RvLK-PGGrIVssE~f~p~d~~ 296 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAF---GPEVDHQLKERFANMK-EGGRIVSSKPFAPLNFR 296 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTC---CHHHHHHHHHHHTTSC-TTCEEEESSCSSCTTCC
T ss_pred ccCCccccccCCccEEEEccccc---CchHHHHHHHHHHcCC-CCcEEEEeecccCCCCC
Confidence 998 55 3599999988775 2455678899999999 99999999998887553
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.2e-14 Score=120.39 Aligned_cols=146 Identities=13% Similarity=0.088 Sum_probs=93.4
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hh-HhhhC---CC------CCCeEEEeccCCC-CCCCccEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PH-VVATA---PV------CEGIFHVGGDMFD-AIPKADAVFMKW 252 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~-~~~~a---~~------~~~i~~~~~d~~~-~~p~~D~i~~~~ 252 (350)
.++.+|||||||+|.++..++++.|+.+++++|+ ++ +++.| ++ ..+++++.+|+.+ +...+|+|.+..
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 5678999999999999999999899999999998 34 44443 43 3579999999887 322246665555
Q ss_pred hhccCChH------HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHH
Q 018775 253 ILHDWDDE------ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLE 326 (350)
Q Consensus 253 vlh~~~~~------~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~ 326 (350)
+.+.|+.. +...+|++++++|| |||++++...........++ ..... .... ......+++.++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~Lk-pGG~l~i~~~~~~~~~~~~~----~~~~~---~~~~-~~~~~~~el~~~l~ 173 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAK-KEAHFEFVTTYSDSYEEAEI----KKRGL---PLLS-KAYFLSEQYKAELS 173 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEE-EEEEEEEEECCCC---------------------CC-HHHHHSHHHHHHHH
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcC-CCcEEEEEEeccccchhchh----hhcCC---CCCC-hhhcchHHHHHHHH
Confidence 44444321 11368999999999 99999984433222110000 00000 0000 00111235999999
Q ss_pred hcCCceeEEEEcC
Q 018775 327 QGGFHRCKIISMP 339 (350)
Q Consensus 327 ~aGf~~~~~~~~~ 339 (350)
++||++..+...+
T Consensus 174 ~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 174 NSGFRIDDVKELD 186 (225)
T ss_dssp HHTCEEEEEEEEC
T ss_pred HcCCCeeeeeecC
Confidence 9999998887654
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-13 Score=114.02 Aligned_cols=141 Identities=16% Similarity=0.246 Sum_probs=108.6
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CC--CeEEEeccCCCCCC-
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CE--GIFHVGGDMFDAIP- 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~--~i~~~~~d~~~~~p- 243 (350)
..+++.+. ..++.+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ .. +++++.+|+.++.+
T Consensus 42 ~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~ 117 (194)
T 1dus_A 42 KILVENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD 117 (194)
T ss_dssp HHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred HHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccccc
Confidence 34455555 567889999999999999999987 679999999 888877664 22 49999999988543
Q ss_pred -CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH
Q 018775 244 -KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM 322 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~ 322 (350)
.||+|++...+|+ ..+....++++++++|+ |||++++...... ...++.
T Consensus 118 ~~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~~----------------------------~~~~~~ 167 (194)
T 1dus_A 118 RKYNKIITNPPIRA-GKEVLHRIIEEGKELLK-DNGEIWVVIQTKQ----------------------------GAKSLA 167 (194)
T ss_dssp SCEEEEEECCCSTT-CHHHHHHHHHHHHHHEE-EEEEEEEEEESTH----------------------------HHHHHH
T ss_pred CCceEEEECCCccc-chhHHHHHHHHHHHHcC-CCCEEEEEECCCC----------------------------ChHHHH
Confidence 4999999888774 45567789999999999 9999998653221 124566
Q ss_pred HHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 323 KLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 323 ~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
+.+++. |..+++......+.++.++|
T Consensus 168 ~~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 168 KYMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHHH-hcceEEEecCCcEEEEEEee
Confidence 777777 77777777777778887776
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-13 Score=112.82 Aligned_cols=122 Identities=22% Similarity=0.284 Sum_probs=94.6
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC--C--C
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA--I--P 243 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~--~--p 243 (350)
+++.+. ..++.+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ ..++ ++.+|..+. . +
T Consensus 17 ~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 17 AISALA--PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHC--CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 444455 56788999999999999999999999999999999 888887763 3378 888888663 2 3
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHH
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMK 323 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ 323 (350)
.||+|++...+|+ ..++++++++|+ |||++++.+...+ +...+.+
T Consensus 94 ~~D~i~~~~~~~~------~~~l~~~~~~L~-~gG~l~~~~~~~~----------------------------~~~~~~~ 138 (178)
T 3hm2_A 94 NPDVIFIGGGLTA------PGVFAAAWKRLP-VGGRLVANAVTVE----------------------------SEQMLWA 138 (178)
T ss_dssp CCSEEEECC-TTC------TTHHHHHHHTCC-TTCEEEEEECSHH----------------------------HHHHHHH
T ss_pred CCCEEEECCcccH------HHHHHHHHHhcC-CCCEEEEEeeccc----------------------------cHHHHHH
Confidence 5999999999987 467999999999 9999997553221 1456667
Q ss_pred HHHhcCCceeEE
Q 018775 324 LLEQGGFHRCKI 335 (350)
Q Consensus 324 ll~~aGf~~~~~ 335 (350)
++++.|+...++
T Consensus 139 ~~~~~~~~~~~~ 150 (178)
T 3hm2_A 139 LRKQFGGTISSF 150 (178)
T ss_dssp HHHHHCCEEEEE
T ss_pred HHHHcCCeeEEE
Confidence 778888776554
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.8e-14 Score=113.97 Aligned_cols=131 Identities=12% Similarity=0.033 Sum_probs=94.4
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC-CccEEEecchh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP-KADAVFMKWIL 254 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p-~~D~i~~~~vl 254 (350)
.+..+|||+|||+|.++..++...|+.+++++|+ +.+++.+++ ..++++ .|... +.+ +||+|++..+|
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~L 125 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKML 125 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETCH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhHH
Confidence 4688999999999999999999999999999999 899988764 225555 67665 333 49999999999
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcc-cCCHHHHHHHHHhcCCcee
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGK-ERTEQEWMKLLEQGGFHRC 333 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~e~~~ll~~aGf~~~ 333 (350)
|++ + +....+.++++.|+ |||.++-.+ +..-.+. .. |. ..-...|.+.+ ...+.++
T Consensus 126 HlL-~-~~~~al~~v~~~L~-pggvfISfp-tksl~Gr-----------------~~-gm~~~Y~~~~~~~~-~~~~~~~ 182 (200)
T 3fzg_A 126 PVL-K-QQDVNILDFLQLFH-TQNFVISFP-IKSLSGK-----------------EK-GMEENYQLWFESFT-KGWIKIL 182 (200)
T ss_dssp HHH-H-HTTCCHHHHHHTCE-EEEEEEEEE-CCCCC-------------------CT-TCCCCHHHHHHHHT-TTTSCEE
T ss_pred Hhh-h-hhHHHHHHHHHHhC-CCCEEEEeC-hHHhcCC-----------------Cc-chhhhHHHHHHHhc-cCcceee
Confidence 998 3 33456669999999 998887665 1111111 11 11 12256666666 5556667
Q ss_pred EEEEcCC
Q 018775 334 KIISMPA 340 (350)
Q Consensus 334 ~~~~~~~ 340 (350)
+...+++
T Consensus 183 ~~~~~~n 189 (200)
T 3fzg_A 183 DSKVIGN 189 (200)
T ss_dssp EEEEETT
T ss_pred eeeeeCc
Confidence 7666655
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-13 Score=121.26 Aligned_cols=151 Identities=15% Similarity=0.073 Sum_probs=105.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------------CCCeEEEeccCCC-C----C--C
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------------CEGIFHVGGDMFD-A----I--P 243 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~i~~~~~d~~~-~----~--p 243 (350)
.++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+ + + +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 46789999999999999999884 5779999999 888877654 1379999999987 4 3 2
Q ss_pred --CccEEEecchhccC--ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCC-------CCC----c-----cc------c
Q 018775 244 --KADAVFMKWILHDW--DDEACVKILKNCRQAIPDKSGKLVLVEIVVQED-------GNN----I-----FG------D 297 (350)
Q Consensus 244 --~~D~i~~~~vlh~~--~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~-------~~~----~-----~~------~ 297 (350)
.||+|++..++|+. +.++...+|++++++|+ |||.+++.....+.- ... . +. .
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 190 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLS-PGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPL 190 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEE-EEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCS
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhC-CCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCC
Confidence 49999999999986 44567799999999999 999999876532110 000 0 00 0
Q ss_pred cchhhhhhH-hh-hcCCcccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 298 MGLVFDLVM-FA-HTTGGKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 298 ~~~~~~~~~-~~-~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
......+.+ .. ... ....+.+++.+++++.||+++.....
T Consensus 191 ~~~~~~f~l~~~~~~~-~~~~~~~~~~~l~~~~G~~~v~~~~f 232 (313)
T 3bgv_A 191 FGCKYDFNLEGVVDVP-EFLVYFPLLNEMAKKYNMKLVYKKTF 232 (313)
T ss_dssp SCCEEEEEEC---CCE-EECCCHHHHHHHGGGGTEEEEEEEEH
T ss_pred ccceEEEEECCcccCc-ceEEcHHHHHHHHHHcCcEEEEecCH
Confidence 000000000 00 011 12357899999999999999988764
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-13 Score=115.72 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=95.2
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCC-cEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCC--CccEEEecchhccCCh
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHI-KGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIP--KADAVFMKWILHDWDD 259 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~~~ 259 (350)
++.+|||||||+|.++..+ +. +++++|. +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++||+++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 110 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVED 110 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSC
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCC
Confidence 6789999999999999877 44 8999999 888887765 3689999999988 655 3999999999999875
Q ss_pred HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh-Hhh--hcCCcccCCHHHHHHHHHhcC
Q 018775 260 EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV-MFA--HTTGGKERTEQEWMKLLEQGG 329 (350)
Q Consensus 260 ~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~s~~e~~~ll~~aG 329 (350)
. .++|++++++|+ |||++++.+...... ........ ... ...+...++.+++.++|+ |
T Consensus 111 ~--~~~l~~~~~~L~-pgG~l~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 111 V--ERVLLEARRVLR-PGGALVVGVLEALSP-------WAALYRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp H--HHHHHHHHHHEE-EEEEEEEEEECTTSH-------HHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred H--HHHHHHHHHHcC-CCCEEEEEecCCcCc-------HHHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 4 588999999999 999999987543221 00000000 000 001134579999999999 7
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-13 Score=121.38 Aligned_cols=151 Identities=10% Similarity=0.068 Sum_probs=100.8
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CC-------CeEEEeccCCC---------CCC
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CE-------GIFHVGGDMFD---------AIP 243 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~-------~i~~~~~d~~~---------~~p 243 (350)
++.+|||||||+|..+..+++. ...+++++|+ +.+++.|++ .. +++|...|+.. +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4789999999999877776664 3468999999 999998875 11 26787887721 223
Q ss_pred --CccEEEecchhccC-ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCC------------cc-cccchhh----h
Q 018775 244 --KADAVFMKWILHDW-DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNN------------IF-GDMGLVF----D 303 (350)
Q Consensus 244 --~~D~i~~~~vlh~~-~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~------------~~-~~~~~~~----~ 303 (350)
.||+|+|..++|+. +.++...+|++++++|+ |||++++.......-... .. ....... +
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lk-pGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 205 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTA-SGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADD 205 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEE-EEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETT
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcC-CCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccccc
Confidence 49999999999974 44456799999999999 999998876532211100 00 0000000 0
Q ss_pred ----hhHhhhcCC--cccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 304 ----LVMFAHTTG--GKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 304 ----~~~~~~~~~--~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
........+ -...+.+++.++++++||+++.....
T Consensus 206 ~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 206 RIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp EEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred ccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 000000000 12457899999999999999988664
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-14 Score=124.37 Aligned_cols=133 Identities=14% Similarity=0.083 Sum_probs=91.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC---CCC--CccEEEe---
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD---AIP--KADAVFM--- 250 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~---~~p--~~D~i~~--- 250 (350)
.++.+|||||||+|..+..+++..|. +++++|+ |.+++.|++ ..+++++.+|... +++ .||.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 56889999999999999999887664 7899999 999988764 5678888888654 344 3888864
Q ss_pred --cchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhc
Q 018775 251 --KWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQG 328 (350)
Q Consensus 251 --~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~a 328 (350)
...++|++ +...++++++++|| |||+|++.+......... ..++ . -.....+.+...|.++
T Consensus 138 ~~~~~~~~~~--~~~~~~~e~~rvLk-PGG~l~f~~~~~~~~~~~------~~~~-------~-~~~~~~~~~~~~L~ea 200 (236)
T 3orh_A 138 PLSEETWHTH--QFNFIKNHAFRLLK-PGGVLTYCNLTSWGELMK------SKYS-------D-ITIMFEETQVPALLEA 200 (236)
T ss_dssp CCBGGGTTTH--HHHHHHHTHHHHEE-EEEEEEECCHHHHHHHTT------TTCS-------C-HHHHHHHHTHHHHHHH
T ss_pred ecccchhhhc--chhhhhhhhhheeC-CCCEEEEEecCCchhhhh------hhhh-------h-hhhhhHHHHHHHHHHc
Confidence 45556544 45688999999999 999998754222110000 0000 0 0111245667788999
Q ss_pred CCceeEE
Q 018775 329 GFHRCKI 335 (350)
Q Consensus 329 Gf~~~~~ 335 (350)
||+++.+
T Consensus 201 GF~~~~i 207 (236)
T 3orh_A 201 GFRRENI 207 (236)
T ss_dssp TCCGGGE
T ss_pred CCeEEEE
Confidence 9986544
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-12 Score=111.37 Aligned_cols=137 Identities=15% Similarity=0.137 Sum_probs=97.0
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHh----hhCCCCCCeEEEeccCCCC-----CC-CccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVV----ATAPVCEGIFHVGGDMFDA-----IP-KADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~----~~a~~~~~i~~~~~d~~~~-----~p-~~D~i~~~~ 252 (350)
..++.+|||||||+|.++..+++..++.+++++|+ +.++ +.++...++.++.+|...+ ++ .||+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 56788999999999999999999887778999999 7644 4444346788999988763 22 49999986
Q ss_pred hhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH----HHHHhc
Q 018775 253 ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM----KLLEQG 328 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~----~ll~~a 328 (350)
+.+ ..+...++++++++|| |||++++.-...+.. ...+.+++. +.++++
T Consensus 134 ~~~---~~~~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~~ 186 (210)
T 1nt2_A 134 IAQ---KNQIEILKANAEFFLK-EKGEVVIMVKARSID-----------------------STAEPEEVFKSVLKEMEGD 186 (210)
T ss_dssp CCS---TTHHHHHHHHHHHHEE-EEEEEEEEEEHHHHC-----------------------TTSCHHHHHHHHHHHHHTT
T ss_pred ccC---hhHHHHHHHHHHHHhC-CCCEEEEEEecCCcc-----------------------ccCCHHHHHHHHHHHHHhh
Confidence 332 2344556999999999 999999873221100 001123321 237888
Q ss_pred CCceeEEEEcCC---ceeEEEEee
Q 018775 329 GFHRCKIISMPA---LYSIIEAYP 349 (350)
Q Consensus 329 Gf~~~~~~~~~~---~~~vi~~~~ 349 (350)
|++++...... .+.++.++|
T Consensus 187 -f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 187 -FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp -SEEEEEEECTTTCTTEEEEEEEE
T ss_pred -cEEeeeecCCCCCCCcEEEEEEc
Confidence 99999988733 567788775
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.6e-13 Score=131.13 Aligned_cols=101 Identities=15% Similarity=0.183 Sum_probs=87.0
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC------------CCCeEEEeccCCC-CCC--Ccc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV------------CEGIFHVGGDMFD-AIP--KAD 246 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------~~~i~~~~~d~~~-~~p--~~D 246 (350)
..++.+|||||||+|.++..|++.. |..+++++|+ +.+++.|++ ..+++++.+|+.+ +.+ .||
T Consensus 719 ~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFD 798 (950)
T 3htx_A 719 ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVD 798 (950)
T ss_dssp HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCC
T ss_pred ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCee
Confidence 3468899999999999999999987 5679999999 888887743 2579999999998 554 499
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
+|++..++||++++....++++++++|+ || .++|..+.
T Consensus 799 lVV~~eVLeHL~dp~l~~~L~eI~RvLK-PG-~LIISTPN 836 (950)
T 3htx_A 799 IGTCLEVIEHMEEDQACEFGEKVLSLFH-PK-LLIVSTPN 836 (950)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHTTC-CS-EEEEEECB
T ss_pred EEEEeCchhhCChHHHHHHHHHHHHHcC-CC-EEEEEecC
Confidence 9999999999999888899999999999 99 77766544
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.2e-13 Score=115.88 Aligned_cols=142 Identities=15% Similarity=0.173 Sum_probs=101.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCC----CCCCeEEEeccCCCC--CC----CccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAP----VCEGIFHVGGDMFDA--IP----KADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~----~~~~i~~~~~d~~~~--~p----~~D~i~~~ 251 (350)
++++.+|||+|||+|.++..+++. .|+-+++++|+ +.+++.++ +..++..+.+|...+ .+ .+|+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 789999999999999999999987 68899999999 88877654 356788898888763 11 38888753
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
+++. ++...+++++++.|| |||+++|.......+... + .. ...++-.+.|+++||+
T Consensus 155 --~~~~--~~~~~~l~~~~r~LK-pGG~lvI~ik~r~~d~~~-----------------p-~~-~~~~~ev~~L~~~GF~ 210 (233)
T 4df3_A 155 --VAQP--EQAAIVVRNARFFLR-DGGYMLMAIKARSIDVTT-----------------E-PS-EVYKREIKTLMDGGLE 210 (233)
T ss_dssp --CCCT--THHHHHHHHHHHHEE-EEEEEEEEEECCHHHHHT-----------------C-CC-HHHHHHHHHHHHTTCC
T ss_pred --ccCC--hhHHHHHHHHHHhcc-CCCEEEEEEecccCCCCC-----------------C-hH-HHHHHHHHHHHHCCCE
Confidence 2221 234578999999999 999999865332221100 0 00 0123345678999999
Q ss_pred eeEEEEcCC---ceeEEEEee
Q 018775 332 RCKIISMPA---LYSIIEAYP 349 (350)
Q Consensus 332 ~~~~~~~~~---~~~vi~~~~ 349 (350)
.++.+.+.. .+.++.++.
T Consensus 211 l~e~i~L~pf~~~H~lv~~~~ 231 (233)
T 4df3_A 211 IKDVVHLDPFDRDHAMIYAVM 231 (233)
T ss_dssp EEEEEECTTTSTTEEEEEECC
T ss_pred EEEEEccCCCCCceEEEEEEE
Confidence 999988754 366766653
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.6e-14 Score=121.52 Aligned_cols=100 Identities=13% Similarity=0.150 Sum_probs=78.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC---CCC--CccEEEe-cc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD---AIP--KADAVFM-KW 252 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~---~~p--~~D~i~~-~~ 252 (350)
.++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4678999999999999999966443 48999999 888887764 3679999999876 344 3999999 55
Q ss_pred h--hccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 253 I--LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 253 v--lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
. .+++.......++++++++|| |||+|++.+..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~Lk-pgG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLK-PGGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEE-EEEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcC-CCeEEEEEecC
Confidence 4 344445556688999999999 99999987644
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-13 Score=120.79 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=95.7
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC----C---CCeEEEeccCCCCCC--
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV----C---EGIFHVGGDMFDAIP-- 243 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~---~~i~~~~~d~~~~~p-- 243 (350)
.+++.++ ..++.+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ . .+++++.+|+.++++
T Consensus 101 ~~~~~~~--~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 178 (275)
T 1yb2_A 101 YIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ 178 (275)
T ss_dssp -----CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred HHHHHcC--CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCC
Confidence 4455555 677899999999999999999998 78899999999 888876653 2 579999999998554
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHH
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMK 323 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ 323 (350)
.||+|++ ++++. ..+|++++++|+ |||++++...... ..+++.+
T Consensus 179 ~fD~Vi~-----~~~~~--~~~l~~~~~~Lk-pgG~l~i~~~~~~----------------------------~~~~~~~ 222 (275)
T 1yb2_A 179 MYDAVIA-----DIPDP--WNHVQKIASMMK-PGSVATFYLPNFD----------------------------QSEKTVL 222 (275)
T ss_dssp CEEEEEE-----CCSCG--GGSHHHHHHTEE-EEEEEEEEESSHH----------------------------HHHHHHH
T ss_pred CccEEEE-----cCcCH--HHHHHHHHHHcC-CCCEEEEEeCCHH----------------------------HHHHHHH
Confidence 3999998 34443 378999999999 9999998652110 1456777
Q ss_pred HHHhcCCceeEEEE
Q 018775 324 LLEQGGFHRCKIIS 337 (350)
Q Consensus 324 ll~~aGf~~~~~~~ 337 (350)
.++++||..+++..
T Consensus 223 ~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 223 SLSASGMHHLETVE 236 (275)
T ss_dssp HSGGGTEEEEEEEE
T ss_pred HHHHCCCeEEEEEE
Confidence 78889998887765
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-13 Score=120.80 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=81.2
Q ss_pred CcceEEEecCCchH----HHHHHHHHCC----CCcEEEecc-hhHhhhCCCC----------------------------
Q 018775 186 SIQSLADVGGGTGG----ALAEIVKSYP----HIKGINFDL-PHVVATAPVC---------------------------- 228 (350)
Q Consensus 186 ~~~~vLDvG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 228 (350)
+..+|+|+|||+|. +++.|++..+ +.++++.|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 5566666644 468999999 8888876531
Q ss_pred ---------CCeEEEeccCCC-CCC---CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 229 ---------EGIFHVGGDMFD-AIP---KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 229 ---------~~i~~~~~d~~~-~~p---~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
.+|+|..+|+.+ +++ .||+|+|.++|++++++...+++++++++|+ |||.|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~-pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLK-PDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEE-EEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhC-CCcEEEE
Confidence 269999999998 554 4999999999999999888899999999999 9999987
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.5e-12 Score=108.98 Aligned_cols=120 Identities=17% Similarity=0.184 Sum_probs=93.6
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC---CCC
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA---IPK 244 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~p~ 244 (350)
++..+. ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+. .+.
T Consensus 47 ~l~~l~--~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 47 TLAALA--PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHC--CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred HHHhcC--CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence 344445 667889999999999999999987 779999999 888887764 23899999999882 346
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKL 324 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~l 324 (350)
||+|++...+ + .. ++++++++|+ |||++++..... .+..++.++
T Consensus 123 ~D~v~~~~~~----~--~~-~l~~~~~~Lk-pgG~lv~~~~~~----------------------------~~~~~~~~~ 166 (204)
T 3njr_A 123 PEAVFIGGGG----S--QA-LYDRLWEWLA-PGTRIVANAVTL----------------------------ESETLLTQL 166 (204)
T ss_dssp CSEEEECSCC----C--HH-HHHHHHHHSC-TTCEEEEEECSH----------------------------HHHHHHHHH
T ss_pred CCEEEECCcc----c--HH-HHHHHHHhcC-CCcEEEEEecCc----------------------------ccHHHHHHH
Confidence 9999987644 1 23 8999999999 999998744211 025677788
Q ss_pred HHhcCCceeEE
Q 018775 325 LEQGGFHRCKI 335 (350)
Q Consensus 325 l~~aGf~~~~~ 335 (350)
+++.||.+.++
T Consensus 167 l~~~g~~i~~i 177 (204)
T 3njr_A 167 HARHGGQLLRI 177 (204)
T ss_dssp HHHHCSEEEEE
T ss_pred HHhCCCcEEEE
Confidence 89999887775
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-13 Score=116.39 Aligned_cols=142 Identities=11% Similarity=0.105 Sum_probs=98.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhh----hCCCCCCeEEEeccCCCC--C----CCccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVA----TAPVCEGIFHVGGDMFDA--I----PKADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~----~a~~~~~i~~~~~d~~~~--~----p~~D~i~~~ 251 (350)
..++.+|||+|||+|.++..+++.+ |..+++++|+ +.+++ .++...+++++.+|+.++ . ..||+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5678899999999999999999986 7789999999 66443 343347899999999872 2 249999984
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
.. ..+....++++++++|+ |||++++.- ........ . .. ..+-..+ .++|+++||+
T Consensus 155 ~~----~~~~~~~~~~~~~~~Lk-pgG~l~i~~-~~~~~~~~------~--~~---------~~~~~~~-~~~l~~~Gf~ 210 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLR-NGGHFVISI-KANCIDST------A--SA---------EAVFASE-VKKMQQENMK 210 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEE-EEEEEEEEE-EHHHHCSS------S--CH---------HHHHHHH-HHTTGGGTEE
T ss_pred CC----CccHHHHHHHHHHHHcC-CCeEEEEEE-cccccccC------C--CH---------HHHHHHH-HHHHHHCCCc
Confidence 43 23344567999999999 999999832 21100000 0 00 0000123 5889999999
Q ss_pred eeEEEEcCCc---eeEEEEee
Q 018775 332 RCKIISMPAL---YSIIEAYP 349 (350)
Q Consensus 332 ~~~~~~~~~~---~~vi~~~~ 349 (350)
++++.++..+ +.++.+++
T Consensus 211 ~~~~~~~~~~~~~~~~v~~~~ 231 (233)
T 2ipx_A 211 PQEQLTLEPYERDHAVVVGVY 231 (233)
T ss_dssp EEEEEECTTTSSSEEEEEEEE
T ss_pred eEEEEecCCccCCcEEEEEEe
Confidence 9998776433 66666654
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-13 Score=115.16 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=84.6
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCC--CccEEEecchhcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIP--KADAVFMKWILHD 256 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~ 256 (350)
.++.+|||||||+|.++..+++..+. +++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..++|+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 56789999999999999999998654 8999999 888877654 3689999999988 655 4999999999887
Q ss_pred CC-------------hHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 257 WD-------------DEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 257 ~~-------------~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
+. .++...+|++++++|+ |||++++.+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~~~ 161 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLV-PGGRFISMTSA 161 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEE-EEEEEEEEESC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCc-CCCEEEEEeCC
Confidence 65 4466799999999999 99999997744
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=109.18 Aligned_cols=133 Identities=14% Similarity=0.134 Sum_probs=93.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C-C-C-CccEEEec-
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A-I-P-KADAVFMK- 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~-~-p-~~D~i~~~- 251 (350)
..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++..|... + . + .||+|++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 457889999999999999999987 779999999 889888765 2689999977665 1 2 3 39999876
Q ss_pred chhccC------ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHH
Q 018775 252 WILHDW------DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLL 325 (350)
Q Consensus 252 ~vlh~~------~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll 325 (350)
..+++- ..+....+|++++++|+ |||++++.......... .......+|.+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~--------------------~~~~~~~~~~~~l 156 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLE-VGGRLAIMIYYGHDGGD--------------------MEKDAVLEYVIGL 156 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEE-EEEEEEEEEC------C--------------------HHHHHHHHHHHHS
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcC-CCcEEEEEEeCCCCCCH--------------------HHHHHHHHHHHhC
Confidence 333320 23456688999999999 99999987644322111 0011245666666
Q ss_pred HhcCCceeEEEEcC
Q 018775 326 EQGGFHRCKIISMP 339 (350)
Q Consensus 326 ~~aGf~~~~~~~~~ 339 (350)
...+|.+.+.....
T Consensus 157 ~~~~~~~~~~~~~~ 170 (185)
T 3mti_A 157 DQRVFTAMLYQPLN 170 (185)
T ss_dssp CTTTEEEEEEEESS
T ss_pred CCceEEEEEehhhc
Confidence 77789988877763
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.40 E-value=3.8e-12 Score=109.50 Aligned_cols=142 Identities=15% Similarity=0.168 Sum_probs=97.3
Q ss_pred CCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHh----hhCCCCCCeEEEeccCCCCC------CCccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVV----ATAPVCEGIFHVGGDMFDAI------PKADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~----~~a~~~~~i~~~~~d~~~~~------p~~D~i~~~ 251 (350)
+.++.+|||+|||+|.++..+++. .|..+++++|+ +.++ +.+++..++.++.+|...+. +.||+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 678899999999999999999986 56789999999 7664 33333468999999998631 249999886
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
... + .....+++.+++.|+ |||+|++.......+.. . ......++..+.|+++||+
T Consensus 154 ~a~---~-~~~~il~~~~~~~Lk-pGG~lvisik~~~~d~t------------------~-~~~e~~~~~~~~L~~~gf~ 209 (232)
T 3id6_C 154 IAQ---P-DQTDIAIYNAKFFLK-VNGDMLLVIKARSIDVT------------------K-DPKEIYKTEVEKLENSNFE 209 (232)
T ss_dssp CCC---T-THHHHHHHHHHHHEE-EEEEEEEEEC-------------------------C-CSSSSTTHHHHHHHHTTEE
T ss_pred CCC---h-hHHHHHHHHHHHhCC-CCeEEEEEEccCCcccC------------------C-CHHHHHHHHHHHHHHCCCE
Confidence 433 2 233344566777999 99999987322211100 0 0111123344677889999
Q ss_pred eeEEEEcCC---ceeEEEEee
Q 018775 332 RCKIISMPA---LYSIIEAYP 349 (350)
Q Consensus 332 ~~~~~~~~~---~~~vi~~~~ 349 (350)
+++...+.. .+.++.+++
T Consensus 210 ~~~~~~l~p~~~~h~~v~~~~ 230 (232)
T 3id6_C 210 TIQIINLDPYDKDHAIVLSKY 230 (232)
T ss_dssp EEEEEECTTTCSSCEEEEEEE
T ss_pred EEEEeccCCCcCceEEEEEEe
Confidence 999998844 477888776
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=8.8e-13 Score=115.73 Aligned_cols=128 Identities=16% Similarity=0.165 Sum_probs=99.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCC--CCccEEEecchhcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAI--PKADAVFMKWILHD 256 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~--p~~D~i~~~~vlh~ 256 (350)
.++.+|||+|||+|.++..+++..+ +++++|+ +.+++.+++ ...+++..+|+.+++ ..||+|+++...|
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~- 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH-
Confidence 4678999999999999999888755 8999999 888887764 112899999987743 3599999865544
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEE
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII 336 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~ 336 (350)
....++++++++|+ |||++++.+.... +.+++.++++++||+++++.
T Consensus 196 ----~~~~~l~~~~~~Lk-pgG~lils~~~~~----------------------------~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 196 ----LHAALAPRYREALV-PGGRALLTGILKD----------------------------RAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp ----HHHHHHHHHHHHEE-EEEEEEEEEEEGG----------------------------GHHHHHHHHHHTTCEEEEEE
T ss_pred ----HHHHHHHHHHHHcC-CCCEEEEEeeccC----------------------------CHHHHHHHHHHCCCEEEEEe
Confidence 35688999999999 9999998653221 26889999999999999987
Q ss_pred EcCCceeEEEEee
Q 018775 337 SMPALYSIIEAYP 349 (350)
Q Consensus 337 ~~~~~~~vi~~~~ 349 (350)
..++- ..+.++|
T Consensus 243 ~~~~W-~~l~~~k 254 (254)
T 2nxc_A 243 AEGEW-VLLAYGR 254 (254)
T ss_dssp EETTE-EEEEEEC
T ss_pred ccCCe-EEEEEEC
Confidence 76553 3344443
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.39 E-value=4.3e-12 Score=109.30 Aligned_cols=142 Identities=11% Similarity=0.122 Sum_probs=100.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhC----CCCCCeEEEeccCCCC-----CC-CccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATA----PVCEGIFHVGGDMFDA-----IP-KADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a----~~~~~i~~~~~d~~~~-----~p-~~D~i~~~ 251 (350)
..++.+|||+|||+|.++..+++.. |..+++++|. +.+++.+ +...+++++.+|+.++ .+ .||+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 5578899999999999999999884 6679999999 7555543 3346899999999872 23 49999975
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
.. .......++++++++|+ |||++++. .........+ + ......+++.++ +++ |+
T Consensus 151 ~~----~~~~~~~~l~~~~~~Lk-pgG~l~~~-~~~~~~~~~~----------------~-~~~~~~~~l~~l-~~~-f~ 205 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLK-RGGYGMIA-VKSRSIDVTK----------------E-PEQVFREVEREL-SEY-FE 205 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEE-EEEEEEEE-EEGGGTCTTS----------------C-HHHHHHHHHHHH-HTT-SE
T ss_pred CC----CHhHHHHHHHHHHHhcC-CCCEEEEE-EecCCCCCCC----------------C-hhhhhHHHHHHH-Hhh-ce
Confidence 43 22334456999999999 99999987 2221111100 0 011125677777 777 99
Q ss_pred eeEEEEcCCc---eeEEEEeeC
Q 018775 332 RCKIISMPAL---YSIIEAYPQ 350 (350)
Q Consensus 332 ~~~~~~~~~~---~~vi~~~~~ 350 (350)
.++...++.. +.++.++|.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~ 227 (227)
T 1g8a_A 206 VIERLNLEPYEKDHALFVVRKT 227 (227)
T ss_dssp EEEEEECTTTSSSEEEEEEECC
T ss_pred eeeEeccCcccCCCEEEEEEeC
Confidence 9999888654 778887763
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.4e-12 Score=108.93 Aligned_cols=130 Identities=16% Similarity=0.117 Sum_probs=103.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCC---CccEEEecch
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIP---KADAVFMKWI 253 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p---~~D~i~~~~v 253 (350)
+++.+|+|||||+|.+++.+++..|..+++++|. +.+++.|++ .++|+++.+|.+++++ .||+|+...+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 4678999999999999999999999889999999 888887764 4689999999998554 4999987654
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCcee
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRC 333 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~ 333 (350)
. .+-...+|..+.+.|+ |+|++++.- . ...+..+++|.+.||.++
T Consensus 94 G----g~~i~~Il~~~~~~L~-~~~~lVlq~-~-----------------------------~~~~~vr~~L~~~Gf~i~ 138 (225)
T 3kr9_A 94 G----GRLIARILEEGLGKLA-NVERLILQP-N-----------------------------NREDDLRIWLQDHGFQIV 138 (225)
T ss_dssp C----HHHHHHHHHHTGGGCT-TCCEEEEEE-S-----------------------------SCHHHHHHHHHHTTEEEE
T ss_pred C----hHHHHHHHHHHHHHhC-CCCEEEEEC-C-----------------------------CCHHHHHHHHHHCCCEEE
Confidence 2 3446789999999999 999987621 1 126788899999999998
Q ss_pred EEEEc---CCceeEEEEee
Q 018775 334 KIISM---PALYSIIEAYP 349 (350)
Q Consensus 334 ~~~~~---~~~~~vi~~~~ 349 (350)
+-.-+ +-++.+|.+.+
T Consensus 139 ~e~lv~e~~~~Yeii~~~~ 157 (225)
T 3kr9_A 139 AESILEEAGKFYEILVVEA 157 (225)
T ss_dssp EEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEEe
Confidence 86543 33566777764
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.5e-12 Score=109.73 Aligned_cols=99 Identities=18% Similarity=0.266 Sum_probs=79.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C--CC--CccEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A--IP--KADAVFMKW 252 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~p--~~D~i~~~~ 252 (350)
.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ + ++ .||+|++..
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 3567999999999999999999999999999999 888887764 3689999999987 4 44 399999875
Q ss_pred hhccCChH------HHHHHHHHHHhhCCCCCceEEEEe
Q 018775 253 ILHDWDDE------ACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 253 vlh~~~~~------~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
..+..... ....++++++++|+ |||.+++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~ 156 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILP-ENGEIHFKT 156 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSC-TTCEEEEEE
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcC-CCcEEEEEe
Confidence 43221100 12478999999999 999998743
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-12 Score=108.05 Aligned_cols=118 Identities=22% Similarity=0.328 Sum_probs=93.1
Q ss_pred HHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCC---CCc
Q 018775 177 VSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAI---PKA 245 (350)
Q Consensus 177 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~---p~~ 245 (350)
++.+. ..++.+|||+|||+|.++..+++.. .+++++|. +.+++.+++ ..+++++.+|+.++. +.|
T Consensus 26 ~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 101 (192)
T 1l3i_A 26 MCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI 101 (192)
T ss_dssp HHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred HHhcC--CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCC
Confidence 33444 5678899999999999999999887 78999999 888877654 268999999987622 469
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHH
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLL 325 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll 325 (350)
|+|++..++++ ...++++++++|+ |||++++..... .+..++.+++
T Consensus 102 D~v~~~~~~~~-----~~~~l~~~~~~l~-~gG~l~~~~~~~----------------------------~~~~~~~~~l 147 (192)
T 1l3i_A 102 DIAVVGGSGGE-----LQEILRIIKDKLK-PGGRIIVTAILL----------------------------ETKFEAMECL 147 (192)
T ss_dssp EEEEESCCTTC-----HHHHHHHHHHTEE-EEEEEEEEECBH----------------------------HHHHHHHHHH
T ss_pred CEEEECCchHH-----HHHHHHHHHHhcC-CCcEEEEEecCc----------------------------chHHHHHHHH
Confidence 99999888765 3578999999999 999998854211 0246778889
Q ss_pred HhcCCce
Q 018775 326 EQGGFHR 332 (350)
Q Consensus 326 ~~aGf~~ 332 (350)
++.||.+
T Consensus 148 ~~~g~~~ 154 (192)
T 1l3i_A 148 RDLGFDV 154 (192)
T ss_dssp HHTTCCC
T ss_pred HHCCCce
Confidence 9999943
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.38 E-value=7.3e-13 Score=115.23 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=99.6
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CC-----CCccEEEec
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AI-----PKADAVFMK 251 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~-----p~~D~i~~~ 251 (350)
.++.+|||||||+|..+..++...|+.+++++|. +.+++.+++ ..+++++.+|+.+ +. ..||+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 4678999999999999999999889999999999 888887764 2469999999877 43 249999987
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
.+ . +...++++++++|+ |||++++..... .....+++.+.+++.||.
T Consensus 149 ~~----~--~~~~~l~~~~~~Lk-pgG~l~~~~g~~--------------------------~~~~~~~~~~~l~~~g~~ 195 (240)
T 1xdz_A 149 AV----A--RLSVLSELCLPLVK-KNGLFVALKAAS--------------------------AEEELNAGKKAITTLGGE 195 (240)
T ss_dssp CC----S--CHHHHHHHHGGGEE-EEEEEEEEECC---------------------------CHHHHHHHHHHHHHTTEE
T ss_pred cc----C--CHHHHHHHHHHhcC-CCCEEEEEeCCC--------------------------chHHHHHHHHHHHHcCCe
Confidence 63 2 24688999999999 999998752100 000145677889999999
Q ss_pred eeEEEEc--C---CceeEEEEee
Q 018775 332 RCKIISM--P---ALYSIIEAYP 349 (350)
Q Consensus 332 ~~~~~~~--~---~~~~vi~~~~ 349 (350)
++++... + +...++.++|
T Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~k 218 (240)
T 1xdz_A 196 LENIHSFKLPIEESDRNIMVIRK 218 (240)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEE
T ss_pred EeEEEEEecCCCCCceEEEEEEe
Confidence 8887553 3 3345555554
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.7e-13 Score=111.72 Aligned_cols=134 Identities=13% Similarity=0.148 Sum_probs=97.1
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-C-CC--CccEEEe
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-A-IP--KADAVFM 250 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~-~p--~~D~i~~ 250 (350)
..++.+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++ ..+++++.+|+.+ + .. .||+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4567899999999999999999985 6779999999 888887764 2689999999876 3 32 4999998
Q ss_pred cchhc-------cCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHH
Q 018775 251 KWILH-------DWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMK 323 (350)
Q Consensus 251 ~~vlh-------~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ 323 (350)
...+. ....++...+++++.++|+ |||++++.......... .......+|.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-~gG~l~~~~~~~~~~~~--------------------~~~~~~~~~~~ 158 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLV-TGGIITVVIYYGGDTGF--------------------EEKEKVLEFLK 158 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEE-EEEEEEEEECCBTTTBS--------------------HHHHHHHHHHT
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCc-CCCEEEEEEccCCCCcH--------------------HHHHHHHHHHH
Confidence 76441 1123345679999999999 99999987644322110 00111344555
Q ss_pred HHHhcCCceeEEEEc
Q 018775 324 LLEQGGFHRCKIISM 338 (350)
Q Consensus 324 ll~~aGf~~~~~~~~ 338 (350)
.+.+.+|++.+...+
T Consensus 159 ~l~~~~~~v~~~~~~ 173 (197)
T 3eey_A 159 GVDQKKFIVQRTDFI 173 (197)
T ss_dssp TSCTTTEEEEEEEET
T ss_pred hCCCCcEEEEEEEec
Confidence 556678888887665
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.37 E-value=5.3e-12 Score=107.91 Aligned_cols=130 Identities=16% Similarity=0.048 Sum_probs=104.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCC-C--CccEEEecch
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAI-P--KADAVFMKWI 253 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~-p--~~D~i~~~~v 253 (350)
+++.+|+|||||+|.+++.+++..|..+++++|+ +.+++.|++ .++|+++.+|.++.. + +||+|+...+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 4678999999999999999999988889999999 888887764 568999999999943 3 4999987664
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCcee
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRC 333 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~ 333 (350)
. .+-...+|.+..+.|+ ++|+|++.- .. ..+.++++|.+.||.++
T Consensus 100 G----g~lI~~IL~~~~~~l~-~~~~lIlqp------------------------~~------~~~~lr~~L~~~Gf~i~ 144 (230)
T 3lec_A 100 G----GRLIADILNNDIDKLQ-HVKTLVLQP------------------------NN------REDDLRKWLAANDFEIV 144 (230)
T ss_dssp C----HHHHHHHHHHTGGGGT-TCCEEEEEE------------------------SS------CHHHHHHHHHHTTEEEE
T ss_pred c----hHHHHHHHHHHHHHhC-cCCEEEEEC------------------------CC------ChHHHHHHHHHCCCEEE
Confidence 4 3457789999999999 999887622 01 26888999999999998
Q ss_pred EEEEc---CCceeEEEEee
Q 018775 334 KIISM---PALYSIIEAYP 349 (350)
Q Consensus 334 ~~~~~---~~~~~vi~~~~ 349 (350)
+-.-+ +-++.+|.+.+
T Consensus 145 ~E~lv~e~~~~Yeii~~~~ 163 (230)
T 3lec_A 145 AEDILTENDKRYEILVVKH 163 (230)
T ss_dssp EEEEEEC--CEEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEEe
Confidence 86544 34567887765
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.37 E-value=7.1e-14 Score=122.69 Aligned_cols=144 Identities=12% Similarity=0.050 Sum_probs=95.7
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC----CCC-----CccEE
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD----AIP-----KADAV 248 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~----~~p-----~~D~i 248 (350)
++.+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ .++++++.+|+.+ +++ .||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 567999999999999999999888899999999 888887764 3579999999543 333 49999
Q ss_pred EecchhccCCh-------------HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCccc
Q 018775 249 FMKWILHDWDD-------------EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKE 315 (350)
Q Consensus 249 ~~~~vlh~~~~-------------~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (350)
+++-..|.... +....++++++++|+ |||.+.+++.+..... .......+..... +..
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lk-pgG~l~~~~~~~~~~~-------~~l~~~g~~~~~~-~~~ 215 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMA-EGGELEFVKRIIHDSL-------QLKKRLRWYSCML-GKK 215 (254)
T ss_dssp EECCCCC-------------------------CTTTTHH-HHTHHHHHHHHHHHHH-------HHGGGBSCEEEEE-SST
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEe-cCCEEEEEHHHHHHHH-------hcccceEEEEECC-CCh
Confidence 99855554320 112356789999999 9999988764432200 0000000000011 233
Q ss_pred CCHHHHHHHHHhcCCceeEEEEc
Q 018775 316 RTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 316 ~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
.+.+++.++++++||+.+++..+
T Consensus 216 ~~~~~~~~~l~~~Gf~~v~~~~~ 238 (254)
T 2h00_A 216 CSLAPLKEELRIQGVPKVTYTEF 238 (254)
T ss_dssp TSHHHHHHHHHHTTCSEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCceEEEEE
Confidence 45688999999999999988776
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-12 Score=115.73 Aligned_cols=95 Identities=11% Similarity=0.185 Sum_probs=79.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCCCccEEEecchhc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIPKADAVFMKWILH 255 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p~~D~i~~~~vlh 255 (350)
..++.+|||||||+|.++..++.+.++.+++++|+ +++++.|++ .++|+++.+|..+ +..+||+|++....
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~~- 198 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAALA- 198 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTTC-
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCCc-
Confidence 67899999999999988776666778999999999 999998875 3789999999988 53459999986542
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+ +..+++++++++|+ |||+|++.+
T Consensus 199 --~--d~~~~l~el~r~Lk-PGG~Lvv~~ 222 (298)
T 3fpf_A 199 --E--PKRRVFRNIHRYVD-TETRIIYRT 222 (298)
T ss_dssp --S--CHHHHHHHHHHHCC-TTCEEEEEE
T ss_pred --c--CHHHHHHHHHHHcC-CCcEEEEEc
Confidence 2 34588999999999 999999865
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-12 Score=115.07 Aligned_cols=105 Identities=12% Similarity=0.097 Sum_probs=81.8
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--CCCeEEEeccCCC-CC------
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--CEGIFHVGGDMFD-AI------ 242 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~~------ 242 (350)
...+++.++ ..++.+|||||||+|.++..++++ ..+++++|+ +.+++.+++ ... ++..++.+ +.
T Consensus 34 ~~~il~~l~--l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~--~v~~~~~~~~~~~~~~~ 107 (261)
T 3iv6_A 34 RENDIFLEN--IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADR--CVTIDLLDITAEIPKEL 107 (261)
T ss_dssp HHHHHHTTT--CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSS--CCEEEECCTTSCCCGGG
T ss_pred HHHHHHhcC--CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhc--cceeeeeeccccccccc
Confidence 345556666 678899999999999999999987 468999999 889988765 111 23333332 11
Q ss_pred -CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 243 -PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 243 -p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
..||+|++..++||++.++...++++++++| |||++++...
T Consensus 108 ~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL--PGG~l~lS~~ 149 (261)
T 3iv6_A 108 AGHFDFVLNDRLINRFTTEEARRACLGMLSLV--GSGTVRASVK 149 (261)
T ss_dssp TTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH--TTSEEEEEEE
T ss_pred CCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC--cCcEEEEEec
Confidence 2599999999999999888889999999987 7999998654
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.1e-12 Score=110.32 Aligned_cols=128 Identities=15% Similarity=0.027 Sum_probs=95.8
Q ss_pred CCCcceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCC--CCCC--CccEEEecc
Q 018775 184 FDSIQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMF--DAIP--KADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~--~~~p--~~D~i~~~~ 252 (350)
.+++.+|||+||| +|.++..+++.. ..+++++|+ +.+++.+++ ..+++++.+|.. .+++ .||+|+++.
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4578999999999 999999999986 678999999 888887764 237999999964 3443 499999986
Q ss_pred hhccCChH-----------------HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCccc
Q 018775 253 ILHDWDDE-----------------ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKE 315 (350)
Q Consensus 253 vlh~~~~~-----------------~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (350)
..++.++. ....+++++.++|+ |||++++.-... .
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~---------------------------~ 183 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLN-PGGKVALYLPDK---------------------------E 183 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEE-EEEEEEEEEESC---------------------------H
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhC-CCeEEEEEeccc---------------------------H
Confidence 66554332 13689999999999 999999852110 0
Q ss_pred CCHHHHHHHHHhcCCceeEEEEcCC
Q 018775 316 RTEQEWMKLLEQGGFHRCKIISMPA 340 (350)
Q Consensus 316 ~s~~e~~~ll~~aGf~~~~~~~~~~ 340 (350)
...+++.+++++.||.+..+....+
T Consensus 184 ~~~~~~~~~l~~~g~~~~~~~~~~g 208 (230)
T 3evz_A 184 KLLNVIKERGIKLGYSVKDIKFKVG 208 (230)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred hHHHHHHHHHHHcCCceEEEEecCC
Confidence 1257888999999998777655444
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-12 Score=113.41 Aligned_cols=126 Identities=13% Similarity=0.188 Sum_probs=99.0
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCC-
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIP- 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p- 243 (350)
..++..++ ..++.+|||+|||+|.++..+++. .|..+++++|+ +.+++.+++ .++++++.+|+.+.++
T Consensus 83 ~~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 160 (255)
T 3mb5_A 83 ALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE 160 (255)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC
T ss_pred HHHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC
Confidence 34555565 678899999999999999999998 88999999999 888887764 4569999999998654
Q ss_pred -CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH
Q 018775 244 -KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM 322 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~ 322 (350)
.||+|++ +.++. ..++++++++|+ |||++++...... ..+++.
T Consensus 161 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~-~gG~l~~~~~~~~----------------------------~~~~~~ 204 (255)
T 3mb5_A 161 ENVDHVIL-----DLPQP--ERVVEHAAKALK-PGGFFVAYTPCSN----------------------------QVMRLH 204 (255)
T ss_dssp CSEEEEEE-----CSSCG--GGGHHHHHHHEE-EEEEEEEEESSHH----------------------------HHHHHH
T ss_pred CCcCEEEE-----CCCCH--HHHHHHHHHHcC-CCCEEEEEECCHH----------------------------HHHHHH
Confidence 3999997 33443 467999999999 9999998642110 146677
Q ss_pred HHHHhcC--CceeEEEE
Q 018775 323 KLLEQGG--FHRCKIIS 337 (350)
Q Consensus 323 ~ll~~aG--f~~~~~~~ 337 (350)
+.+++.| |..+++..
T Consensus 205 ~~l~~~g~~f~~~~~~e 221 (255)
T 3mb5_A 205 EKLREFKDYFMKPRTIN 221 (255)
T ss_dssp HHHHHTGGGBSCCEEEC
T ss_pred HHHHHcCCCccccEEEE
Confidence 8888999 88777643
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.7e-13 Score=115.99 Aligned_cols=114 Identities=10% Similarity=0.063 Sum_probs=90.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC--CCC---CccEEEecchhccC
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD--AIP---KADAVFMKWILHDW 257 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~--~~p---~~D~i~~~~vlh~~ 257 (350)
.++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .||+|++..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~----- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR----- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-----
Confidence 46789999999999999999998 568999999 888888765 5689999999965 444 499999871
Q ss_pred ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEE
Q 018775 258 DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 258 ~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~ 337 (350)
+...+|++++++|+ |||+++. . +...+.+++.++++++||..+++..
T Consensus 120 ---~~~~~l~~~~~~Lk-pgG~l~~---------------------------~--~~~~~~~~~~~~l~~~Gf~~~~~~~ 166 (226)
T 3m33_A 120 ---GPTSVILRLPELAA-PDAHFLY---------------------------V--GPRLNVPEVPERLAAVGWDIVAEDH 166 (226)
T ss_dssp ---CCSGGGGGHHHHEE-EEEEEEE---------------------------E--ESSSCCTHHHHHHHHTTCEEEEEEE
T ss_pred ---CHHHHHHHHHHHcC-CCcEEEE---------------------------e--CCcCCHHHHHHHHHHCCCeEEEEEe
Confidence 22467999999999 9999980 0 1122356788899999999887654
Q ss_pred c
Q 018775 338 M 338 (350)
Q Consensus 338 ~ 338 (350)
.
T Consensus 167 ~ 167 (226)
T 3m33_A 167 V 167 (226)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.3e-12 Score=111.05 Aligned_cols=135 Identities=13% Similarity=0.107 Sum_probs=101.5
Q ss_pred CC-CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-C--CC--CccEEE
Q 018775 184 FD-SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-A--IP--KADAVF 249 (350)
Q Consensus 184 ~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~--~p--~~D~i~ 249 (350)
.. ++.+|||+|||+|.++..++++.+. +++++|+ +.+++.+++ .++++++.+|+.+ + ++ .||+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 55 7889999999999999999998765 9999999 888887764 4579999999988 3 32 499999
Q ss_pred ecchhccC------------------ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcC
Q 018775 250 MKWILHDW------------------DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTT 311 (350)
Q Consensus 250 ~~~vlh~~------------------~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (350)
++-..+.. .......+++.+.++|+ |||+++++. +.
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~---~~---------------------- 178 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLK-QGGKANFVH---RP---------------------- 178 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEE-EEEEEEEEE---CT----------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHcc-CCcEEEEEE---cH----------------------
Confidence 96433221 11345679999999999 999999831 11
Q ss_pred CcccCCHHHHHHHHHhcCCceeEEEEc---C---CceeEEEEee
Q 018775 312 GGKERTEQEWMKLLEQGGFHRCKIISM---P---ALYSIIEAYP 349 (350)
Q Consensus 312 ~~~~~s~~e~~~ll~~aGf~~~~~~~~---~---~~~~vi~~~~ 349 (350)
....++.+.+++.||...++.++ + ....+++++|
T Consensus 179 ----~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~k 218 (259)
T 3lpm_A 179 ----ERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGIK 218 (259)
T ss_dssp ----TTHHHHHHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEEE
T ss_pred ----HHHHHHHHHHHHCCCceEEEEEeecCCCCCcEEEEEEEEe
Confidence 12567888899999998887665 1 2355777776
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=8.8e-13 Score=115.32 Aligned_cols=132 Identities=14% Similarity=0.043 Sum_probs=100.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CC-----CCccEEEec
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AI-----PKADAVFMK 251 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~-----p~~D~i~~~ 251 (350)
.++.+|||||||+|..+..++..+|+.+++++|. +.+++.+++ ..+|+++++|+.+ +. ..||+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4678999999999999999999999999999999 888887764 3459999999887 43 249999986
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
.+- +...+++.+.++|+ |||++++..... ......++.+.+++.||.
T Consensus 159 a~~------~~~~ll~~~~~~Lk-pgG~l~~~~g~~--------------------------~~~e~~~~~~~l~~~G~~ 205 (249)
T 3g89_A 159 AVA------PLCVLSELLLPFLE-VGGAAVAMKGPR--------------------------VEEELAPLPPALERLGGR 205 (249)
T ss_dssp SSC------CHHHHHHHHGGGEE-EEEEEEEEECSC--------------------------CHHHHTTHHHHHHHHTEE
T ss_pred CcC------CHHHHHHHHHHHcC-CCeEEEEEeCCC--------------------------cHHHHHHHHHHHHHcCCe
Confidence 542 23578999999999 999998754110 000134566778889999
Q ss_pred eeEEEEc--CC---ceeEEEEee
Q 018775 332 RCKIISM--PA---LYSIIEAYP 349 (350)
Q Consensus 332 ~~~~~~~--~~---~~~vi~~~~ 349 (350)
..++.+. ++ ...++...|
T Consensus 206 ~~~~~~~~~p~~~~~R~l~~~~k 228 (249)
T 3g89_A 206 LGEVLALQLPLSGEARHLVVLEK 228 (249)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEE
T ss_pred EEEEEEeeCCCCCCcEEEEEEEe
Confidence 9888764 32 345666655
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-12 Score=116.99 Aligned_cols=140 Identities=14% Similarity=0.097 Sum_probs=100.2
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC-C---CC-CccEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD-A---IP-KADAV 248 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~-~---~p-~~D~i 248 (350)
.++.+|||||||+|.++..+++..+..+++++|+ +.+++.+++ ..+++++.+|..+ . .+ .||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999998877889999999 888876653 3689999999887 2 12 49999
Q ss_pred EecchhccCChHHH--HHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHH
Q 018775 249 FMKWILHDWDDEAC--VKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLE 326 (350)
Q Consensus 249 ~~~~vlh~~~~~~~--~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~ 326 (350)
++....+..+.... .+++++++++|+ |||.+++.... . .. ......++.+.++
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~~~~----~---------~~-----------~~~~~~~~~~~l~ 228 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILK-PDGICCNQGES----I---------WL-----------DLELIEKMSRFIR 228 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEE-EEEEEEEEECC----T---------TT-----------CHHHHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcC-CCcEEEEecCC----c---------cc-----------chHHHHHHHHHHH
Confidence 99776665544332 588999999999 99999886311 0 00 0113678889999
Q ss_pred hcCCceeEEEEc--C----CceeEEEEee
Q 018775 327 QGGFHRCKIISM--P----ALYSIIEAYP 349 (350)
Q Consensus 327 ~aGf~~~~~~~~--~----~~~~vi~~~~ 349 (350)
++||..+++... | +....+.|.|
T Consensus 229 ~~GF~~v~~~~~~vP~yp~g~w~f~~as~ 257 (304)
T 3bwc_A 229 ETGFASVQYALMHVPTYPCGSIGTLVCSK 257 (304)
T ss_dssp HHTCSEEEEEECCCTTSTTSCCEEEEEES
T ss_pred hCCCCcEEEEEeecccccCcceEEEEEeC
Confidence 999999888764 3 2344555554
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-12 Score=107.24 Aligned_cols=114 Identities=15% Similarity=0.050 Sum_probs=87.9
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--CCCeEEEeccCCC-CC---C--CccEEEecchh
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--CEGIFHVGGDMFD-AI---P--KADAVFMKWIL 254 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~~---p--~~D~i~~~~vl 254 (350)
..++.+|||||||. +.+|. +.+++.+++ ..+++++.+|+.+ +. + .||+|++.+++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56889999999996 23787 888887765 3469999999987 54 4 39999999999
Q ss_pred ccC-ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCcee
Q 018775 255 HDW-DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRC 333 (350)
Q Consensus 255 h~~-~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~ 333 (350)
||+ ++. ..+|++++++|+ |||++++.+........ . ...++.++|.++|+++|| +.
T Consensus 74 ~~~~~~~--~~~l~~~~r~Lk-pgG~l~~~~~~~~~~~~------------------~-~~~~~~~~~~~~l~~aGf-i~ 130 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILR-PGGCLFLKEPVETAVDN------------------N-SKVKTASKLCSALTLSGL-VE 130 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEE-EEEEEEEEEEEESSSCS------------------S-SSSCCHHHHHHHHHHTTC-EE
T ss_pred hhcccCH--HHHHHHHHHHCC-CCEEEEEEccccccccc------------------c-cccCCHHHHHHHHHHCCC-cE
Confidence 998 554 578999999999 99999996654332110 1 234578999999999999 43
Q ss_pred EEEE
Q 018775 334 KIIS 337 (350)
Q Consensus 334 ~~~~ 337 (350)
+..
T Consensus 131 -~~~ 133 (176)
T 2ld4_A 131 -VKE 133 (176)
T ss_dssp -EEE
T ss_pred -eec
Confidence 444
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.33 E-value=5e-12 Score=110.90 Aligned_cols=126 Identities=18% Similarity=0.216 Sum_probs=97.6
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p 243 (350)
..++..++ ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ ..+++++.+|+.+ +++
T Consensus 86 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 163 (258)
T 2pwy_A 86 SAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE 163 (258)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred HHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence 34566666 678899999999999999999998 67889999998 888877654 2689999999988 465
Q ss_pred --CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHH
Q 018775 244 --KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEW 321 (350)
Q Consensus 244 --~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~ 321 (350)
.||+|++ ++++. ..++++++++|+ |||++++...... ...++
T Consensus 164 ~~~~D~v~~-----~~~~~--~~~l~~~~~~L~-~gG~l~~~~~~~~----------------------------~~~~~ 207 (258)
T 2pwy_A 164 EAAYDGVAL-----DLMEP--WKVLEKAALALK-PDRFLVAYLPNIT----------------------------QVLEL 207 (258)
T ss_dssp TTCEEEEEE-----ESSCG--GGGHHHHHHHEE-EEEEEEEEESCHH----------------------------HHHHH
T ss_pred CCCcCEEEE-----CCcCH--HHHHHHHHHhCC-CCCEEEEEeCCHH----------------------------HHHHH
Confidence 3999997 33443 367999999999 9999998662110 13566
Q ss_pred HHHHHhcCCceeEEEE
Q 018775 322 MKLLEQGGFHRCKIIS 337 (350)
Q Consensus 322 ~~ll~~aGf~~~~~~~ 337 (350)
.+.++++||..+++..
T Consensus 208 ~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 208 VRAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHHTTTTEEEEEEEE
T ss_pred HHHHHHCCCceEEEEE
Confidence 6778888998766543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-12 Score=120.20 Aligned_cols=109 Identities=17% Similarity=0.231 Sum_probs=88.6
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCCC-Ccc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAIP-KAD 246 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~p-~~D 246 (350)
..+++.++ .....+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ...++++.+|+.+..+ .||
T Consensus 186 ~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD 263 (343)
T 2pjd_A 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFD 263 (343)
T ss_dssp HHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEE
T ss_pred HHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCee
Confidence 44556664 34567999999999999999999999999999999 888887764 3346788999987333 599
Q ss_pred EEEecchhcc---CChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 247 AVFMKWILHD---WDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 247 ~i~~~~vlh~---~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
+|+++..+|+ ++.+....++++++++|+ |||.++++..
T Consensus 264 ~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~ 304 (343)
T 2pjd_A 264 MIISNPPFHDGMQTSLDAAQTLIRGAVRHLN-SGGELRIVAN 304 (343)
T ss_dssp EEEECCCCCSSSHHHHHHHHHHHHHHGGGEE-EEEEEEEEEE
T ss_pred EEEECCCcccCccCCHHHHHHHHHHHHHhCC-CCcEEEEEEc
Confidence 9999999986 245567899999999999 9999998764
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.5e-12 Score=119.04 Aligned_cols=107 Identities=18% Similarity=0.289 Sum_probs=86.5
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------C--CCeEEEeccCCCCCC-
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------C--EGIFHVGGDMFDAIP- 243 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~--~~i~~~~~d~~~~~p- 243 (350)
.+++.++ ...+.+|||+|||+|.++..+++.+|+.+++++|. +.+++.+++ . .+++++.+|+.++++
T Consensus 213 ~ll~~l~--~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~ 290 (375)
T 4dcm_A 213 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 290 (375)
T ss_dssp HHHHTCC--CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred HHHHhCc--ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence 4556666 45568999999999999999999999999999999 888887764 1 258889999999655
Q ss_pred -CccEEEecchhcc---CChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 244 -KADAVFMKWILHD---WDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 244 -~~D~i~~~~vlh~---~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
.||+|+++..+|+ ..+.....++++++++|+ |||+++++.
T Consensus 291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~iv~ 334 (375)
T 4dcm_A 291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLK-INGELYIVA 334 (375)
T ss_dssp TCEEEEEECCCC-------CCHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCC-CCcEEEEEE
Confidence 4999999988885 334455689999999999 999999854
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.9e-12 Score=108.60 Aligned_cols=126 Identities=17% Similarity=0.157 Sum_probs=94.4
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC--CCccEEEecchhcc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI--PKADAVFMKWILHD 256 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~--p~~D~i~~~~vlh~ 256 (350)
++.+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|+.+.. ..||+|++..+ ++
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~~ 143 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-AS 143 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-SS
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-CC
Confidence 367999999999999999999999999999999 888877654 235999999999833 25999997542 22
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEE
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII 336 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~ 336 (350)
...++++++++|+ |||.+++... . ...+++.+++. ||+.+++.
T Consensus 144 -----~~~~l~~~~~~L~-~gG~l~~~~~----------------------------~-~~~~~~~~~~~--g~~~~~~~ 186 (207)
T 1jsx_A 144 -----LNDMVSWCHHLPG-EQGRFYALKG----------------------------Q-MPEDEIALLPE--EYQVESVV 186 (207)
T ss_dssp -----HHHHHHHHTTSEE-EEEEEEEEES----------------------------S-CCHHHHHTSCT--TEEEEEEE
T ss_pred -----HHHHHHHHHHhcC-CCcEEEEEeC----------------------------C-CchHHHHHHhc--CCceeeee
Confidence 3578999999999 9999997521 0 12455555554 99988754
Q ss_pred --EcC---CceeEEEEee
Q 018775 337 --SMP---ALYSIIEAYP 349 (350)
Q Consensus 337 --~~~---~~~~vi~~~~ 349 (350)
..+ +...++.++|
T Consensus 187 ~~~~~~~~~~~~~~~~~k 204 (207)
T 1jsx_A 187 KLQVPALDGERHLVVIKA 204 (207)
T ss_dssp EEECC--CCEEEEEEEEE
T ss_pred eeccCCCCCceEEEEEEe
Confidence 222 3455666665
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.32 E-value=5.1e-12 Score=107.82 Aligned_cols=97 Identities=20% Similarity=0.331 Sum_probs=77.0
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C--CC--CccEEEecch
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A--IP--KADAVFMKWI 253 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~p--~~D~i~~~~v 253 (350)
+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ + ++ .+|.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 567999999999999999999999999999999 888887654 3579999999987 3 44 4999887543
Q ss_pred hccCChHH-------HHHHHHHHHhhCCCCCceEEEEe
Q 018775 254 LHDWDDEA-------CVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 254 lh~~~~~~-------~~~~L~~~~~~L~~pgG~lli~e 284 (350)
.. |+... ...+|++++++|+ |||.|++..
T Consensus 118 ~p-~~~~~~~~~rl~~~~~l~~~~~~Lk-pgG~l~~~t 153 (213)
T 2fca_A 118 DP-WPKKRHEKRRLTYSHFLKKYEEVMG-KGGSIHFKT 153 (213)
T ss_dssp CC-CCSGGGGGGSTTSHHHHHHHHHHHT-TSCEEEEEE
T ss_pred CC-CcCccccccccCcHHHHHHHHHHcC-CCCEEEEEe
Confidence 22 22110 2478999999999 999998754
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-11 Score=105.96 Aligned_cols=130 Identities=17% Similarity=0.123 Sum_probs=103.4
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCC-C--CccEEEecch
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAI-P--KADAVFMKWI 253 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~-p--~~D~i~~~~v 253 (350)
+++.+|||||||+|.+++.+++..|..+++++|+ +.+++.|++ .++|++..+|.++.. + .||+|++..+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 4678999999999999999999988889999999 888887764 468999999999843 3 3999987654
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCcee
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRC 333 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~ 333 (350)
. .+-...+|.+..+.|+ ++++|++.-. . ..+.++++|.+.||.++
T Consensus 100 G----g~lI~~IL~~~~~~L~-~~~~lIlq~~------------------------~------~~~~lr~~L~~~Gf~i~ 144 (244)
T 3gnl_A 100 G----GTLIRTILEEGAAKLA-GVTKLILQPN------------------------I------AAWQLREWSEQNNWLIT 144 (244)
T ss_dssp C----HHHHHHHHHHTGGGGT-TCCEEEEEES------------------------S------CHHHHHHHHHHHTEEEE
T ss_pred c----hHHHHHHHHHHHHHhC-CCCEEEEEcC------------------------C------ChHHHHHHHHHCCCEEE
Confidence 3 4557789999999999 9999886320 1 26888899999999987
Q ss_pred EEEEc---CCceeEEEEee
Q 018775 334 KIISM---PALYSIIEAYP 349 (350)
Q Consensus 334 ~~~~~---~~~~~vi~~~~ 349 (350)
+-..+ +-++.+|.+.+
T Consensus 145 ~E~lv~e~~k~Yeii~~~~ 163 (244)
T 3gnl_A 145 SEAILREDNKVYEIMVLAP 163 (244)
T ss_dssp EEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEEe
Confidence 65433 34566777765
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-11 Score=109.61 Aligned_cols=145 Identities=11% Similarity=0.071 Sum_probs=94.9
Q ss_pred HHHhcccCC-CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhh-CCCCCCeEEEe-ccCCC----CCC--Cc
Q 018775 176 LVSHYKDGF-DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVAT-APVCEGIFHVG-GDMFD----AIP--KA 245 (350)
Q Consensus 176 ~~~~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-a~~~~~i~~~~-~d~~~----~~p--~~ 245 (350)
+++.+. . ..+.+|||||||+|.++..+++. +..+++++|. +.|++. ++...++.... .|+.. .+| .|
T Consensus 76 ~l~~~~--~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~f 152 (291)
T 3hp7_A 76 ALAVFN--LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLP 152 (291)
T ss_dssp HHHHTT--CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCC
T ss_pred HHHhcC--CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCC
Confidence 444454 3 35679999999999999998886 4558999999 888876 33345554432 34322 133 39
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCC--cccccchhhhhhHhhhcCCcccCCHHHHHH
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNN--IFGDMGLVFDLVMFAHTTGGKERTEQEWMK 323 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ 323 (350)
|++++...+|++ ..+|++++++|+ |||+++++- .|.-... .......+.+... ..++.+++.+
T Consensus 153 D~v~~d~sf~sl-----~~vL~e~~rvLk-pGG~lv~lv--kPqfe~~~~~~~~~G~vrd~~~-------~~~~~~~v~~ 217 (291)
T 3hp7_A 153 SFASIDVSFISL-----NLILPALAKILV-DGGQVVALV--KPQFEAGREQIGKNGIVRESSI-------HEKVLETVTA 217 (291)
T ss_dssp SEEEECCSSSCG-----GGTHHHHHHHSC-TTCEEEEEE--CGGGTSCGGGCC-CCCCCCHHH-------HHHHHHHHHH
T ss_pred CEEEEEeeHhhH-----HHHHHHHHHHcC-cCCEEEEEE--CcccccChhhcCCCCccCCHHH-------HHHHHHHHHH
Confidence 999998888753 468999999999 999999862 2211100 0000001111110 1225789999
Q ss_pred HHHhcCCceeEEEEc
Q 018775 324 LLEQGGFHRCKIISM 338 (350)
Q Consensus 324 ll~~aGf~~~~~~~~ 338 (350)
+++++||.+..+...
T Consensus 218 ~~~~~Gf~v~~~~~s 232 (291)
T 3hp7_A 218 FAVDYGFSVKGLDFS 232 (291)
T ss_dssp HHHHTTEEEEEEEEC
T ss_pred HHHHCCCEEEEEEEC
Confidence 999999999888664
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.29 E-value=8.4e-12 Score=116.68 Aligned_cols=111 Identities=12% Similarity=0.184 Sum_probs=87.2
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhC-------CC--------CCCeEEEecc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATA-------PV--------CEGIFHVGGD 237 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~--------~~~i~~~~~d 237 (350)
..+++.+. ..++.+|||||||+|.++..+++.++..+++++|+ +.+++.| +. ..+++++.+|
T Consensus 232 ~~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD 309 (433)
T 1u2z_A 232 SDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 309 (433)
T ss_dssp HHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence 44555565 67889999999999999999999887778999999 7776665 32 2689999876
Q ss_pred CCC-C--C----CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCC
Q 018775 238 MFD-A--I----PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQED 290 (350)
Q Consensus 238 ~~~-~--~----p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~ 290 (350)
.+. + + ..||+|+++++++. ++....|+++.+.|+ |||+|++.+...+..
T Consensus 310 ~~~~~~~~~~~~~~FDvIvvn~~l~~---~d~~~~L~el~r~LK-pGG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 310 SFVDNNRVAELIPQCDVILVNNFLFD---EDLNKKVEKILQTAK-VGCKIISLKSLRSLT 365 (433)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTCC---HHHHHHHHHHHTTCC-TTCEEEESSCSSCTT
T ss_pred ccccccccccccCCCCEEEEeCcccc---ccHHHHHHHHHHhCC-CCeEEEEeeccCCcc
Confidence 543 2 2 35999999877742 456678999999999 999999988776654
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.28 E-value=5e-12 Score=116.08 Aligned_cols=105 Identities=15% Similarity=0.145 Sum_probs=85.7
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCC-CCC-Cc
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFD-AIP-KA 245 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~p-~~ 245 (350)
.+++.+. ..++.+|||||||+|.++..+++. +..+++++|..++++.+++ .++++++.+|+.+ +.+ .|
T Consensus 41 ~i~~~l~--~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~ 117 (348)
T 2y1w_A 41 AILQNHT--DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV 117 (348)
T ss_dssp HHHHTGG--GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred HHHhccc--cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCce
Confidence 4455555 456789999999999999988885 5568999998546665543 3789999999998 555 49
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
|+|++..+++|+..+.....+.++++.|+ |||.+++.
T Consensus 118 D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~ 154 (348)
T 2y1w_A 118 DIIISEPMGYMLFNERMLESYLHAKKYLK-PSGNMFPT 154 (348)
T ss_dssp EEEEECCCBTTBTTTSHHHHHHHGGGGEE-EEEEEESC
T ss_pred eEEEEeCchhcCChHHHHHHHHHHHhhcC-CCeEEEEe
Confidence 99999999998887777788999999999 99999854
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.3e-11 Score=99.62 Aligned_cols=119 Identities=18% Similarity=0.247 Sum_probs=91.5
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC--Ccc
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP--KAD 246 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p--~~D 246 (350)
+++.+. ..++.+|||+|||+|.++..+++ +..+++++|. +.+++.+++ ..+++++.+|+.++++ .||
T Consensus 27 ~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 102 (183)
T 2yxd_A 27 SIGKLN--LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN 102 (183)
T ss_dssp HHHHHC--CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred HHHHcC--CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence 344444 56778999999999999999998 7889999999 888887764 2579999999987444 599
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHH
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLE 326 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~ 326 (350)
+|++..+ + ....++++++++ |||++++...... +..++.+.++
T Consensus 103 ~i~~~~~-~-----~~~~~l~~~~~~---~gG~l~~~~~~~~----------------------------~~~~~~~~l~ 145 (183)
T 2yxd_A 103 KAFIGGT-K-----NIEKIIEILDKK---KINHIVANTIVLE----------------------------NAAKIINEFE 145 (183)
T ss_dssp EEEECSC-S-----CHHHHHHHHHHT---TCCEEEEEESCHH----------------------------HHHHHHHHHH
T ss_pred EEEECCc-c-----cHHHHHHHHhhC---CCCEEEEEecccc----------------------------cHHHHHHHHH
Confidence 9999887 2 245788999888 6899887652110 1466788899
Q ss_pred hcCCceeEE
Q 018775 327 QGGFHRCKI 335 (350)
Q Consensus 327 ~aGf~~~~~ 335 (350)
+.||.+..+
T Consensus 146 ~~g~~~~~~ 154 (183)
T 2yxd_A 146 SRGYNVDAV 154 (183)
T ss_dssp HTTCEEEEE
T ss_pred HcCCeEEEE
Confidence 999876554
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.2e-12 Score=119.93 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=87.4
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCC-CCC-
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFD-AIP- 243 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~p- 243 (350)
...+++.+. ..++.+|||||||+|.++..+++ .+..+++++|+.++++.|++ .++|+++.+|+.+ +.+
T Consensus 147 ~~~il~~l~--~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~ 223 (480)
T 3b3j_A 147 QRAILQNHT--DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPE 223 (480)
T ss_dssp HHHHHHTGG--GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS
T ss_pred HHHHHHhhh--hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCC
Confidence 345556555 45678999999999999998887 57779999999447766653 3789999999998 665
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
.||+|++..++|++..++....+.+++++|+ |||.+++
T Consensus 224 ~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lk-pgG~li~ 261 (480)
T 3b3j_A 224 QVDIIISEPMGYMLFNERMLESYLHAKKYLK-PSGNMFP 261 (480)
T ss_dssp CEEEEECCCCHHHHTCHHHHHHHHHGGGGEE-EEEEEES
T ss_pred CeEEEEEeCchHhcCcHHHHHHHHHHHHhcC-CCCEEEE
Confidence 4999999988888887777888999999999 9999985
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.5e-12 Score=112.27 Aligned_cols=98 Identities=17% Similarity=0.119 Sum_probs=78.7
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-CCC--CccEEEecchhccCChHH
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-AIP--KADAVFMKWILHDWDDEA 261 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~~~~~ 261 (350)
++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++...-.++.+|+.+ +++ .||+|++..+++|+.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~- 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN- 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence 6789999999999999999987 568999999 8888877651111288899987 654 49999998876666433
Q ss_pred HHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 262 CVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 262 ~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
...+|++++++|+ |||++++.....
T Consensus 131 ~~~~l~~~~~~Lk-pgG~l~~~~~~~ 155 (260)
T 2avn_A 131 KDKAFSEIRRVLV-PDGLLIATVDNF 155 (260)
T ss_dssp HHHHHHHHHHHEE-EEEEEEEEEEBH
T ss_pred HHHHHHHHHHHcC-CCeEEEEEeCCh
Confidence 5789999999999 999999876543
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-11 Score=107.62 Aligned_cols=100 Identities=18% Similarity=0.175 Sum_probs=81.3
Q ss_pred CCcceEEEecCCchHHHHHHHHH--CCCCcEEEecc-hhHhhhCCC---CC-------C---------------------
Q 018775 185 DSIQSLADVGGGTGGALAEIVKS--YPHIKGINFDL-PHVVATAPV---CE-------G--------------------- 230 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~---~~-------~--------------------- 230 (350)
.+..+|||+|||+|.++..+++. ++..+++++|+ +.+++.++. .. +
T Consensus 50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence 45789999999999999999998 77789999999 888887763 22 2
Q ss_pred ----eE-------------EEeccCCCCC-------C-CccEEEecchhccCCh-------HHHHHHHHHHHhhCCCCCc
Q 018775 231 ----IF-------------HVGGDMFDAI-------P-KADAVFMKWILHDWDD-------EACVKILKNCRQAIPDKSG 278 (350)
Q Consensus 231 ----i~-------------~~~~d~~~~~-------p-~~D~i~~~~vlh~~~~-------~~~~~~L~~~~~~L~~pgG 278 (350)
++ ++.+|++++. . .||+|+++..+++... +....++++++++|+ |||
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG 208 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALP-AHA 208 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSC-TTC
T ss_pred hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcC-CCc
Confidence 67 9999999843 3 5999999876655432 556789999999999 999
Q ss_pred eEEEEee
Q 018775 279 KLVLVEI 285 (350)
Q Consensus 279 ~lli~e~ 285 (350)
+++++..
T Consensus 209 ~l~~~~~ 215 (250)
T 1o9g_A 209 VIAVTDR 215 (250)
T ss_dssp EEEEEES
T ss_pred EEEEeCc
Confidence 9998543
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.6e-11 Score=106.87 Aligned_cols=120 Identities=13% Similarity=0.066 Sum_probs=94.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC-CccEEEecchh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP-KADAVFMKWIL 254 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p-~~D~i~~~~vl 254 (350)
.++.+|||+|||+|.++..+++..+. +++++|+ +.+++.+++ .++++++.+|+.+ ..+ .||+|++...
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p- 201 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV- 201 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC-
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc-
Confidence 46789999999999999999998776 8999999 888887764 4569999999998 333 4999998432
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeE
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCK 334 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~ 334 (350)
.....+++++.++|+ |||.+++.+....... .....+++.+.++++||+...
T Consensus 202 -----~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~----------------------~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 202 -----VRTHEFIPKALSIAK-DGAIIHYHNTVPEKLM----------------------PREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp -----SSGGGGHHHHHHHEE-EEEEEEEEEEEEGGGT----------------------TTTTHHHHHHHHHHTTCEEEE
T ss_pred -----hhHHHHHHHHHHHCC-CCeEEEEEEeeccccc----------------------cccHHHHHHHHHHHcCCeeEE
Confidence 122468999999999 9999998876542211 112367888999999998766
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-11 Score=109.94 Aligned_cols=126 Identities=19% Similarity=0.248 Sum_probs=96.7
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCC-
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIP- 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p- 243 (350)
..++..++ ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .++++++.+|+.+.++
T Consensus 102 ~~i~~~~~--~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 179 (277)
T 1o54_A 102 SFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 179 (277)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence 34555666 677889999999999999999998 67899999999 888887764 2589999999988544
Q ss_pred -CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH
Q 018775 244 -KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM 322 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~ 322 (350)
.||+|++ +.++. ..+++++.++|+ |||++++...... ..+++.
T Consensus 180 ~~~D~V~~-----~~~~~--~~~l~~~~~~L~-pgG~l~~~~~~~~----------------------------~~~~~~ 223 (277)
T 1o54_A 180 KDVDALFL-----DVPDP--WNYIDKCWEALK-GGGRFATVCPTTN----------------------------QVQETL 223 (277)
T ss_dssp CSEEEEEE-----CCSCG--GGTHHHHHHHEE-EEEEEEEEESSHH----------------------------HHHHHH
T ss_pred CccCEEEE-----CCcCH--HHHHHHHHHHcC-CCCEEEEEeCCHH----------------------------HHHHHH
Confidence 4999998 33433 367999999999 9999998662110 135566
Q ss_pred HHHHhcCCceeEEEE
Q 018775 323 KLLEQGGFHRCKIIS 337 (350)
Q Consensus 323 ~ll~~aGf~~~~~~~ 337 (350)
+.+++.||..+++..
T Consensus 224 ~~l~~~gf~~~~~~~ 238 (277)
T 1o54_A 224 KKLQELPFIRIEVWE 238 (277)
T ss_dssp HHHHHSSEEEEEEEC
T ss_pred HHHHHCCCceeEEEE
Confidence 677778888776643
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5e-12 Score=108.25 Aligned_cols=97 Identities=14% Similarity=0.227 Sum_probs=77.1
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC--C--CC--CccEEEecc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD--A--IP--KADAVFMKW 252 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~--~--~p--~~D~i~~~~ 252 (350)
...+|||||||+|.++..+++.+|+.+++++|. +.+++.+++ ..+++++.+|+.+ + ++ .+|.|++.+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 578999999999999999999999999999999 888877653 3579999999876 2 44 399998864
Q ss_pred hhccCChH-HH------HHHHHHHHhhCCCCCceEEEEe
Q 018775 253 ILHDWDDE-AC------VKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 253 vlh~~~~~-~~------~~~L~~~~~~L~~pgG~lli~e 284 (350)
... |+.. .. ..++++++++|+ |||.|++..
T Consensus 114 ~~p-~~~~~~~~rr~~~~~~l~~~~r~Lk-pGG~l~i~t 150 (218)
T 3dxy_A 114 PDP-WHKARHNKRRIVQVPFAELVKSKLQ-LGGVFHMAT 150 (218)
T ss_dssp CCC-CCSGGGGGGSSCSHHHHHHHHHHEE-EEEEEEEEE
T ss_pred CCC-ccchhhhhhhhhhHHHHHHHHHHcC-CCcEEEEEe
Confidence 433 2221 11 258999999999 999998865
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-11 Score=104.60 Aligned_cols=99 Identities=13% Similarity=0.096 Sum_probs=81.1
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC---CC
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI---PK 244 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---p~ 244 (350)
.+++.+. ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++.+|..+.. ..
T Consensus 68 ~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (210)
T 3lbf_A 68 RMTELLE--LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAP 143 (210)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCC
Confidence 3444555 677899999999999999999998 578999999 888887764 357999999998832 24
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
||+|++..++|++++ ++++.|+ |||++++.-..
T Consensus 144 ~D~i~~~~~~~~~~~--------~~~~~L~-pgG~lv~~~~~ 176 (210)
T 3lbf_A 144 FDAIIVTAAPPEIPT--------ALMTQLD-EGGILVLPVGE 176 (210)
T ss_dssp EEEEEESSBCSSCCT--------HHHHTEE-EEEEEEEEECS
T ss_pred ccEEEEccchhhhhH--------HHHHhcc-cCcEEEEEEcC
Confidence 999999999999875 4788999 99999986543
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-11 Score=104.85 Aligned_cols=100 Identities=12% Similarity=0.121 Sum_probs=82.0
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC---
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP--- 243 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p--- 243 (350)
.+++.+. ..++.+|||||||+|.++..+++.. |+.+++++|. +.+++.+++ ..+++++.+|+..+.+
T Consensus 68 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 145 (215)
T 2yxe_A 68 MMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLA 145 (215)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGC
T ss_pred HHHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCC
Confidence 3444454 5678899999999999999999987 6689999999 888887764 2569999999876443
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
+||+|++..++|++++ ++++.|+ |||++++...
T Consensus 146 ~fD~v~~~~~~~~~~~--------~~~~~L~-pgG~lv~~~~ 178 (215)
T 2yxe_A 146 PYDRIYTTAAGPKIPE--------PLIRQLK-DGGKLLMPVG 178 (215)
T ss_dssp CEEEEEESSBBSSCCH--------HHHHTEE-EEEEEEEEES
T ss_pred CeeEEEECCchHHHHH--------HHHHHcC-CCcEEEEEEC
Confidence 4999999999998773 7889999 9999998653
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.3e-11 Score=104.35 Aligned_cols=98 Identities=9% Similarity=0.071 Sum_probs=79.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC---C-----CCccE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA---I-----PKADA 247 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~-----p~~D~ 247 (350)
.++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++++++.+|..+. . ..||+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 4578999999999999999999988 789999999 888877653 46799999998762 1 34999
Q ss_pred EEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 248 VFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 248 i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
|++... ......+++++.++|+ |||.+++-+...+
T Consensus 137 v~~d~~-----~~~~~~~l~~~~~~L~-pgG~lv~~~~~~~ 171 (223)
T 3duw_A 137 IFIDAD-----KQNNPAYFEWALKLSR-PGTVIIGDNVVRE 171 (223)
T ss_dssp EEECSC-----GGGHHHHHHHHHHTCC-TTCEEEEESCSGG
T ss_pred EEEcCC-----cHHHHHHHHHHHHhcC-CCcEEEEeCCCcC
Confidence 997544 2345688999999999 9998887655443
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.9e-11 Score=101.01 Aligned_cols=100 Identities=13% Similarity=0.009 Sum_probs=80.7
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C--C--CCccEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A--I--PKADAVFMKW 252 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~--p~~D~i~~~~ 252 (350)
.++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+ . . ..||+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 45789999999999999988774 4568999999 888888765 2589999999987 2 3 2499999987
Q ss_pred hhccCChHHHHHHHHHHHh--hCCCCCceEEEEeeee
Q 018775 253 ILHDWDDEACVKILKNCRQ--AIPDKSGKLVLVEIVV 287 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~--~L~~pgG~lli~e~~~ 287 (350)
.+|+ ..++...+++++.+ +|+ |||.+++.....
T Consensus 122 p~~~-~~~~~~~~l~~~~~~~~L~-pgG~l~~~~~~~ 156 (189)
T 3p9n_A 122 PYNV-DSADVDAILAALGTNGWTR-EGTVAVVERATT 156 (189)
T ss_dssp CTTS-CHHHHHHHHHHHHHSSSCC-TTCEEEEEEETT
T ss_pred CCCc-chhhHHHHHHHHHhcCccC-CCeEEEEEecCC
Confidence 7664 33567789999999 999 999999865443
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.7e-11 Score=104.92 Aligned_cols=98 Identities=12% Similarity=0.158 Sum_probs=79.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-C---CCccEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-I---PKADAV 248 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~---p~~D~i 248 (350)
..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++|+++.+|+.+ + . ..||+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 34678999999999999999999988 889999999 888887764 4689999999876 2 2 159999
Q ss_pred EecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 249 FMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 249 ~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
++.. +......+++++.++|+ |||.|++.+...
T Consensus 141 ~~d~-----~~~~~~~~l~~~~~~Lk-pGG~lv~~~~~~ 173 (248)
T 3tfw_A 141 FIDA-----DKPNNPHYLRWALRYSR-PGTLIIGDNVVR 173 (248)
T ss_dssp EECS-----CGGGHHHHHHHHHHTCC-TTCEEEEECCSG
T ss_pred EECC-----chHHHHHHHHHHHHhcC-CCeEEEEeCCCc
Confidence 9854 23445678999999999 999888765544
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.22 E-value=9.5e-12 Score=107.45 Aligned_cols=155 Identities=14% Similarity=0.101 Sum_probs=91.6
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEE--------Ee-ccCCCCCCC
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFH--------VG-GDMFDAIPK 244 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~--------~~-~d~~~~~p~ 244 (350)
.++.+. ....+.+|||||||+|.++..+++.. ..+++++|+ +.+++.+.+ ..++.. .. .|+..+ .
T Consensus 28 ~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 103 (232)
T 3opn_A 28 ALKEFH-LEINGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQG--R 103 (232)
T ss_dssp HHHHTT-CCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSC--C
T ss_pred HHHHcC-CCCCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcC--C
Confidence 344444 12346799999999999999999873 348999999 888777543 233332 22 222221 1
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCC--cccccchhhhhhHhhhcCCcccCCHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNN--IFGDMGLVFDLVMFAHTTGGKERTEQEWM 322 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~e~~ 322 (350)
+|.+.+..++.++ ..+|++++++|+ |||++++.. .+..... .........+.. ....+.+++.
T Consensus 104 ~d~~~~D~v~~~l-----~~~l~~i~rvLk-pgG~lv~~~--~p~~e~~~~~~~~~G~~~d~~-------~~~~~~~~l~ 168 (232)
T 3opn_A 104 PSFTSIDVSFISL-----DLILPPLYEILE-KNGEVAALI--KPQFEAGREQVGKNGIIRDPK-------VHQMTIEKVL 168 (232)
T ss_dssp CSEEEECCSSSCG-----GGTHHHHHHHSC-TTCEEEEEE--CHHHHSCHHHHC-CCCCCCHH-------HHHHHHHHHH
T ss_pred CCEEEEEEEhhhH-----HHHHHHHHHhcc-CCCEEEEEE--CcccccCHHHhCcCCeecCcc-------hhHHHHHHHH
Confidence 3444444444332 468999999999 999999853 1110000 000000000000 0112678999
Q ss_pred HHHHhcCCceeEEEEcC------CceeEEEEee
Q 018775 323 KLLEQGGFHRCKIISMP------ALYSIIEAYP 349 (350)
Q Consensus 323 ~ll~~aGf~~~~~~~~~------~~~~vi~~~~ 349 (350)
++++++||+++.+...+ ....++.++|
T Consensus 169 ~~l~~aGf~v~~~~~~pi~g~~gn~e~l~~~~~ 201 (232)
T 3opn_A 169 KTATQLGFSVKGLTFSPIKGGAGNVEFLVHLLK 201 (232)
T ss_dssp HHHHHHTEEEEEEEECSSCBTTTBCCEEEEEEE
T ss_pred HHHHHCCCEEEEEEEccCCCCCCCHHHHHHHhh
Confidence 99999999998886543 2345666655
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.6e-11 Score=108.03 Aligned_cols=94 Identities=16% Similarity=0.235 Sum_probs=76.1
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCC-Cc---cEEEec--
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIP-KA---DAVFMK-- 251 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p-~~---D~i~~~-- 251 (350)
++.+|||+|||+|.++..+++. |+.+++++|+ +.+++.+++ .++++++.+|++++.+ .| |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 4679999999999999999999 9999999999 888887764 3479999999998543 48 999996
Q ss_pred ----------chhccCChH------HHHHHHHHHH-hhCCCCCceEEE
Q 018775 252 ----------WILHDWDDE------ACVKILKNCR-QAIPDKSGKLVL 282 (350)
Q Consensus 252 ----------~vlh~~~~~------~~~~~L~~~~-~~L~~pgG~lli 282 (350)
.+. |.+.. +...+++++. +.++ |||.+++
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~-pgG~l~~ 247 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDT-SGKIVLM 247 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCC-TTCEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCC-CCCEEEE
Confidence 233 22221 1227899999 9999 9999986
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.8e-11 Score=97.92 Aligned_cols=97 Identities=22% Similarity=0.275 Sum_probs=78.8
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecchhHhhhCCCCCCeEEEeccCCC-C--------CC--CccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDLPHVVATAPVCEGIFHVGGDMFD-A--------IP--KADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~--------~p--~~D~i~~~ 251 (350)
..++.+|||+|||+|.++..+++.+ |+.+++++|...+++. .+++++.+|+.+ + ++ .||+|++.
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~ 95 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPI----VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSD 95 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCC----TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcccccc----CcEEEEEcccccchhhhhhhccCCCCceeEEEEC
Confidence 3567899999999999999999984 7789999998444432 579999999988 4 54 49999999
Q ss_pred chhccCChHH---------HHHHHHHHHhhCCCCCceEEEEee
Q 018775 252 WILHDWDDEA---------CVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 252 ~vlh~~~~~~---------~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
..+|+.+... ...+++++.++|+ |||++++...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~ 137 (180)
T 1ej0_A 96 MAPNMSGTPAVDIPRAMYLVELALEMCRDVLA-PGGSFVVKVF 137 (180)
T ss_dssp CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred CCccccCCCccchHHHHHHHHHHHHHHHHHcC-CCcEEEEEEe
Confidence 8888765431 1588999999999 9999997653
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.1e-11 Score=109.29 Aligned_cols=98 Identities=12% Similarity=0.178 Sum_probs=78.9
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC---CCC--CccEEEecchh
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD---AIP--KADAVFMKWIL 254 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~---~~p--~~D~i~~~~vl 254 (350)
..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..|++++.+|..+ ..+ .||+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 45999999999999999999999999999999 899887764 4689999999876 233 49999986544
Q ss_pred ccCChHH--HHHHHHHHHhhCCCCCceEEEEee
Q 018775 255 HDWDDEA--CVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 255 h~~~~~~--~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
+...... ..+++++++++|+ |||.+++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~Lk-pgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLA-PGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcC-CCcEEEEEec
Confidence 4322222 2578999999999 9999987553
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.7e-11 Score=99.63 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=77.4
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCC--CCcEEEecchhHhhhCCCCCCeEEEeccCCC-C-----------
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYP--HIKGINFDLPHVVATAPVCEGIFHVGGDMFD-A----------- 241 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p--~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~----------- 241 (350)
+.+.+. .+.++.+|||||||+|.++..+++.+| +.+++++|+.++. ...+++++.+|+.+ +
T Consensus 13 ~~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----~~~~v~~~~~d~~~~~~~~~~~~~~i~ 87 (201)
T 2plw_A 13 LDNKYL-FLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----PIPNVYFIQGEIGKDNMNNIKNINYID 87 (201)
T ss_dssp HHHHHC-CCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----CCTTCEEEECCTTTTSSCCC-------
T ss_pred HHHHcC-CCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----CCCCceEEEccccchhhhhhccccccc
Confidence 444443 135678999999999999999999988 6899999984431 23579999999987 4
Q ss_pred --------------CC--CccEEEecchhccCC----hHH-----HHHHHHHHHhhCCCCCceEEEE
Q 018775 242 --------------IP--KADAVFMKWILHDWD----DEA-----CVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 242 --------------~p--~~D~i~~~~vlh~~~----~~~-----~~~~L~~~~~~L~~pgG~lli~ 283 (350)
++ .||+|++...+|+.. +.. ...++++++++|+ |||++++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lk-pgG~lv~~ 153 (201)
T 2plw_A 88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYIN-IGGTYIVK 153 (201)
T ss_dssp ----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred cccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHcc-CCCEEEEE
Confidence 34 499999987777532 111 1248999999999 99999873
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=4e-11 Score=103.93 Aligned_cols=94 Identities=17% Similarity=0.196 Sum_probs=77.4
Q ss_pred CcceEEEecCCchHHHHHHHHH----CCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCCC--C---C--CccEEEecc
Q 018775 186 SIQSLADVGGGTGGALAEIVKS----YPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFDA--I---P--KADAVFMKW 252 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~--~---p--~~D~i~~~~ 252 (350)
++.+|||||||+|..+..+++. .|+.+++++|+ +.+++.++. ..+|+++.+|..+. + + +||+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 3579999999999999999987 68899999999 888887764 56899999999873 1 2 499998765
Q ss_pred hhccCChHHHHHHHHHHHh-hCCCCCceEEEEee
Q 018775 253 ILHDWDDEACVKILKNCRQ-AIPDKSGKLVLVEI 285 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~-~L~~pgG~lli~e~ 285 (350)
. |. +...+|+++++ .|+ |||+|++.+.
T Consensus 161 ~-~~----~~~~~l~~~~r~~Lk-pGG~lv~~d~ 188 (236)
T 2bm8_A 161 A-HA----NTFNIMKWAVDHLLE-EGDYFIIEDM 188 (236)
T ss_dssp S-CS----SHHHHHHHHHHHTCC-TTCEEEECSC
T ss_pred c-hH----hHHHHHHHHHHhhCC-CCCEEEEEeC
Confidence 4 42 34578999997 999 9999998654
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-11 Score=107.25 Aligned_cols=99 Identities=16% Similarity=0.196 Sum_probs=77.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCCC--------CC-
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFDA--------IP- 243 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~~--------~p- 243 (350)
..++.+|||+|||+|.++..+++++|+.+++++|+ +.+++.+++ .++++++.+|+.+. ++
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45678999999999999999999999999999999 888776643 13699999999874 22
Q ss_pred -CccEEEecchhc----------------cCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 244 -KADAVFMKWILH----------------DWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 244 -~~D~i~~~~vlh----------------~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
.||+|+++--.+ |........+++.+.++|+ |||+++++
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~ 169 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMV-SGGQLSLI 169 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEE-EEEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcC-CCCEEEEE
Confidence 499999972221 2222235688999999999 99999874
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.8e-11 Score=111.21 Aligned_cols=97 Identities=11% Similarity=0.081 Sum_probs=81.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC--CccEEEecchhc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP--KADAVFMKWILH 255 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh 255 (350)
.++.+|||+|||+|.++..+++. +.+++++|. +.+++.+++ ...++++.+|+.+ ..+ .||+|+++..+|
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~ 309 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFH 309 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCC
T ss_pred CCCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchh
Confidence 35789999999999999999987 568999999 888887765 2358999999998 444 599999998888
Q ss_pred c---CChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 256 D---WDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 256 ~---~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+ ...+....++++++++|+ |||+++++.
T Consensus 310 ~~~~~~~~~~~~~l~~~~~~Lk-pGG~l~iv~ 340 (381)
T 3dmg_A 310 VGGAVILDVAQAFVNVAAARLR-PGGVFFLVS 340 (381)
T ss_dssp TTCSSCCHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred hcccccHHHHHHHHHHHHHhcC-cCcEEEEEE
Confidence 7 345667799999999999 999999863
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.2e-11 Score=111.85 Aligned_cols=96 Identities=18% Similarity=0.179 Sum_probs=77.6
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCC-CCC--CccEEEecchh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFD-AIP--KADAVFMKWIL 254 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~p--~~D~i~~~~vl 254 (350)
.++.+|||||||+|.++..+++. +..+++++|..++++.+++ .++|+++.+|+.+ ++| .||+|++..+.
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 45789999999999999999987 5669999999557776653 4679999999998 666 49999997654
Q ss_pred ccCC-hHHHHHHHHHHHhhCCCCCceEEE
Q 018775 255 HDWD-DEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 255 h~~~-~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
+++. ......+++++.++|+ |||.++.
T Consensus 144 ~~l~~~~~~~~~l~~~~r~Lk-pgG~li~ 171 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLA-PDGLIFP 171 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEE-EEEEEES
T ss_pred ccccCchhHHHHHHHHHHhCC-CCCEEcc
Confidence 4432 3345688999999999 9999874
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.9e-11 Score=105.16 Aligned_cols=99 Identities=14% Similarity=0.127 Sum_probs=80.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-C------CCcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-I------PKAD 246 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~------p~~D 246 (350)
.++.+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ .++|+++.+|..+ + . ..||
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 3567999999999999999999886 789999999 888777764 4689999999876 2 2 3599
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
+|++... ......+++++.++|+ |||.|++-+.....
T Consensus 139 ~V~~d~~-----~~~~~~~l~~~~~~Lk-pGG~lv~d~~~~~g 175 (242)
T 3r3h_A 139 FIFIDAD-----KTNYLNYYELALKLVT-PKGLIAIDNIFWDG 175 (242)
T ss_dssp EEEEESC-----GGGHHHHHHHHHHHEE-EEEEEEEECSSSSS
T ss_pred EEEEcCC-----hHHhHHHHHHHHHhcC-CCeEEEEECCccCC
Confidence 9988543 3345678999999999 99999987665544
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.7e-11 Score=105.92 Aligned_cols=97 Identities=9% Similarity=0.204 Sum_probs=79.2
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCC-----CCccEEEec
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAI-----PKADAVFMK 251 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~-----p~~D~i~~~ 251 (350)
.++.+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++ .++++++.+|+.+.. ..||+|++.
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 4578999999999999999999888999999999 888887764 358999999998732 249999975
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
.. ......+++++.++|+ |||.|++-+...
T Consensus 150 ~~-----~~~~~~~l~~~~~~Lk-pgG~lv~d~~~~ 179 (232)
T 3ntv_A 150 AA-----KAQSKKFFEIYTPLLK-HQGLVITDNVLY 179 (232)
T ss_dssp TT-----SSSHHHHHHHHGGGEE-EEEEEEEECTTG
T ss_pred Cc-----HHHHHHHHHHHHHhcC-CCeEEEEeeCCc
Confidence 43 2335678999999999 999998744433
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-11 Score=105.55 Aligned_cols=135 Identities=10% Similarity=0.010 Sum_probs=101.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC-CccEEEecchhcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP-KADAVFMKWILHD 256 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh~ 256 (350)
.+..+|||||||.|-++..+....|..+++++|+ +.+++.++. ..+.++...|+.. +.+ +||++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4578999999999999999999999999999999 888887764 4568899999998 433 4999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEE
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII 336 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~ 336 (350)
+.++.....+ ++.+.|+ |+|.++-.+.-.=.++. .. | ...-.+.|.+.+.+.|+.+.+ .
T Consensus 211 Le~q~kg~g~-~ll~aL~-~~~vvVSfp~ksl~Grs-------~g----m-------~~~Y~~~~e~~~~~~g~~~~~-~ 269 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVN-SPNIVVTFPTKSLGQRS-------KG----M-------FQNYSQSFESQARERSCRIQR-L 269 (281)
T ss_dssp HHHHSTTHHH-HHHHHSS-CSEEEEEEECC--------------C----H-------HHHHHHHHHHHHHHHTCCEEE-E
T ss_pred hhhhhhHHHH-HHHHHhC-CCCEEEeccchhhcCCC-------cc----h-------hhHHHHHHHHHHHhcCCceee-e
Confidence 9887766667 8999999 99887765531111100 00 1 111257889999999995544 4
Q ss_pred EcCC
Q 018775 337 SMPA 340 (350)
Q Consensus 337 ~~~~ 340 (350)
.+++
T Consensus 270 ~~~n 273 (281)
T 3lcv_B 270 EIGN 273 (281)
T ss_dssp EETT
T ss_pred eecC
Confidence 4443
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.19 E-value=3.8e-11 Score=103.53 Aligned_cols=99 Identities=15% Similarity=0.073 Sum_probs=80.8
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCCCCC---Cc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFDAIP---KA 245 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~~p---~~ 245 (350)
..+++.+. ..++.+|||||||+|.++..+++.. .+++++|. +.+++.+++ ..+++++.+|+.+..+ .|
T Consensus 60 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~f 135 (231)
T 1vbf_A 60 IFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPY 135 (231)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCE
T ss_pred HHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCc
Confidence 34455555 6678899999999999999999986 68999998 888887764 2289999999987332 49
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
|+|++..++|++++ +++++|+ |||++++...
T Consensus 136 D~v~~~~~~~~~~~--------~~~~~L~-pgG~l~~~~~ 166 (231)
T 1vbf_A 136 DRVVVWATAPTLLC--------KPYEQLK-EGGIMILPIG 166 (231)
T ss_dssp EEEEESSBBSSCCH--------HHHHTEE-EEEEEEEEEC
T ss_pred cEEEECCcHHHHHH--------HHHHHcC-CCcEEEEEEc
Confidence 99999999999764 5788999 9999998764
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=5.9e-11 Score=108.51 Aligned_cols=94 Identities=21% Similarity=0.265 Sum_probs=76.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCC-CCC--CccEEEecch
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFD-AIP--KADAVFMKWI 253 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~p--~~D~i~~~~v 253 (350)
..++.+|||||||+|.++..+++. +..+++++|..++++.+++ .++++++.+|+.+ ++| .||+|++..+
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 140 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 140 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCc
Confidence 456789999999999999999887 4468999999447776654 3789999999998 665 4999998763
Q ss_pred ---hccCChHHHHHHHHHHHhhCCCCCceEE
Q 018775 254 ---LHDWDDEACVKILKNCRQAIPDKSGKLV 281 (350)
Q Consensus 254 ---lh~~~~~~~~~~L~~~~~~L~~pgG~ll 281 (350)
+++ ......+|++++++|+ |||+++
T Consensus 141 ~~~l~~--~~~~~~~l~~~~~~Lk-pgG~li 168 (340)
T 2fyt_A 141 GYFLLF--ESMLDSVLYAKNKYLA-KGGSVY 168 (340)
T ss_dssp BTTBTT--TCHHHHHHHHHHHHEE-EEEEEE
T ss_pred hhhccC--HHHHHHHHHHHHhhcC-CCcEEE
Confidence 443 3345678999999999 999987
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.18 E-value=2.2e-11 Score=104.46 Aligned_cols=98 Identities=14% Similarity=0.239 Sum_probs=77.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC---CC------CCcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD---AI------PKAD 246 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~---~~------p~~D 246 (350)
.++.+|||||||+|..+..+++..+ +.+++++|+ +.+++.+++ .++|+++.+|+.+ .. ..||
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 3578999999999999999999864 789999999 888887764 3579999999754 12 3599
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
+|++....+++. ....+++.+ ++|+ |||.|++.+..
T Consensus 137 ~V~~d~~~~~~~--~~~~~~~~~-~~Lk-pgG~lv~~~~~ 172 (221)
T 3u81_A 137 MVFLDHWKDRYL--PDTLLLEKC-GLLR-KGTVLLADNVI 172 (221)
T ss_dssp EEEECSCGGGHH--HHHHHHHHT-TCCC-TTCEEEESCCC
T ss_pred EEEEcCCcccch--HHHHHHHhc-cccC-CCeEEEEeCCC
Confidence 999988777643 334678888 9999 99999874433
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.1e-11 Score=103.74 Aligned_cols=98 Identities=14% Similarity=0.225 Sum_probs=74.6
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC------------CCCCeEEEeccCCC--C--CC--Cc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP------------VCEGIFHVGGDMFD--A--IP--KA 245 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~~i~~~~~d~~~--~--~p--~~ 245 (350)
.+..+|||||||+|.++..+++.+|+..++++|+ +.+++.|+ ...+|+++.+|+.+ + ++ .+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4678999999999999999999999999999999 88876542 24679999999986 3 43 39
Q ss_pred cEEEecchhccCChH---H----HHHHHHHHHhhCCCCCceEEEEe
Q 018775 246 DAVFMKWILHDWDDE---A----CVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 246 D~i~~~~vlh~~~~~---~----~~~~L~~~~~~L~~pgG~lli~e 284 (350)
|.|++...-. |... . ...+|++++++|+ |||.|++..
T Consensus 125 D~v~~~~~dp-~~k~~h~krr~~~~~~l~~~~~~Lk-pGG~l~~~t 168 (235)
T 3ckk_A 125 TKMFFLFPDP-HFKRTKHKWRIISPTLLAEYAYVLR-VGGLVYTIT 168 (235)
T ss_dssp EEEEEESCC------------CCCHHHHHHHHHHEE-EEEEEEEEE
T ss_pred eEEEEeCCCc-hhhhhhhhhhhhhHHHHHHHHHHCC-CCCEEEEEe
Confidence 9988643221 1110 0 1368999999999 999999864
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.3e-11 Score=104.36 Aligned_cols=101 Identities=16% Similarity=0.180 Sum_probs=81.8
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC--
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP-- 243 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p-- 243 (350)
...+++.+. ..++.+|||||||+|.++..+++..+ .+++++|+ +.+++.+++ ..+++++.+|...+++
T Consensus 80 ~~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 156 (235)
T 1jg1_A 80 VAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPK 156 (235)
T ss_dssp HHHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCC
Confidence 344555555 67788999999999999999999987 89999998 888887764 2469999999855543
Q ss_pred -CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 244 -KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
+||+|++..+++++++ ++.+.|+ |||++++...
T Consensus 157 ~~fD~Ii~~~~~~~~~~--------~~~~~L~-pgG~lvi~~~ 190 (235)
T 1jg1_A 157 APYDVIIVTAGAPKIPE--------PLIEQLK-IGGKLIIPVG 190 (235)
T ss_dssp CCEEEEEECSBBSSCCH--------HHHHTEE-EEEEEEEEEC
T ss_pred CCccEEEECCcHHHHHH--------HHHHhcC-CCcEEEEEEe
Confidence 3999999999998764 5788999 9999998553
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.9e-11 Score=112.14 Aligned_cols=102 Identities=14% Similarity=0.123 Sum_probs=81.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCC-CCC-CccEEEecchh
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFD-AIP-KADAVFMKWIL 254 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~p-~~D~i~~~~vl 254 (350)
..++.+|||||||+|.++..++++. ..+++++|...+++.+++ .++|+++.+|+.+ +.+ .||+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 5678899999999999999999873 348999998766666653 4679999999998 555 49999997766
Q ss_pred ccCCh-HHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 255 HDWDD-EACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 255 h~~~~-~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
|+... .....++++++++|+ |||.+++.+...
T Consensus 140 ~~l~~e~~~~~~l~~~~~~Lk-pgG~li~~~~~~ 172 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLK-PTGVMYPSHARM 172 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEE-EEEEEESSEEEE
T ss_pred hcccchHHHHHHHHHHHhhCC-CCeEEEEecCeE
Confidence 66543 346678999999999 999998765443
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.16 E-value=6.2e-11 Score=101.61 Aligned_cols=95 Identities=12% Similarity=0.077 Sum_probs=76.2
Q ss_pred cceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------C-CCeEEEeccCCC---CC--CCccEEEec
Q 018775 187 IQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------C-EGIFHVGGDMFD---AI--PKADAVFMK 251 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~-~~i~~~~~d~~~---~~--p~~D~i~~~ 251 (350)
..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ . ++|+++.+|..+ .. ..||+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 45999999999999999999875 789999999 888887764 3 589999999876 23 249999885
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
... .....+++++.++|+ |||.|++-+...
T Consensus 137 ~~~-----~~~~~~l~~~~~~Lk-pGG~lv~dn~~~ 166 (221)
T 3dr5_A 137 VSP-----MDLKALVDAAWPLLR-RGGALVLADALL 166 (221)
T ss_dssp CCT-----TTHHHHHHHHHHHEE-EEEEEEETTTTG
T ss_pred CcH-----HHHHHHHHHHHHHcC-CCcEEEEeCCCC
Confidence 432 234568999999999 999998754443
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=4.8e-11 Score=108.09 Aligned_cols=100 Identities=15% Similarity=0.240 Sum_probs=81.8
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC---C
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI---P 243 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~---p 243 (350)
.+++.+. ..++.+|||||||+|.++..+++..+ +.+++++|+ +++++.+++ ..+++++.+|+.+.. .
T Consensus 66 ~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 66 LFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence 4445555 66788999999999999999999877 478999999 888887764 246999999998732 2
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
+||+|++..++|+++ +++.+.|+ |||++++...
T Consensus 144 ~fD~Iv~~~~~~~~~--------~~~~~~Lk-pgG~lvi~~~ 176 (317)
T 1dl5_A 144 PYDVIFVTVGVDEVP--------ETWFTQLK-EGGRVIVPIN 176 (317)
T ss_dssp CEEEEEECSBBSCCC--------HHHHHHEE-EEEEEEEEBC
T ss_pred CeEEEEEcCCHHHHH--------HHHHHhcC-CCcEEEEEEC
Confidence 499999999999877 46788999 9999999754
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.1e-11 Score=103.52 Aligned_cols=96 Identities=11% Similarity=0.188 Sum_probs=80.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-C---CCccEEEe
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-I---PKADAVFM 250 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~---p~~D~i~~ 250 (350)
.++.+|||||||+|..+..+++.+|+.+++++|. +.+++.+++ .++++++.+|+.+ + . ..||+|++
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 4577999999999999999999999999999999 888887764 3579999999987 2 1 24999999
Q ss_pred cchhccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 251 KWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 251 ~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
....+ +...+++++.++|+ |||++++.+..
T Consensus 133 ~~~~~-----~~~~~l~~~~~~L~-pgG~lv~~~~~ 162 (233)
T 2gpy_A 133 DAAKG-----QYRRFFDMYSPMVR-PGGLILSDNVL 162 (233)
T ss_dssp EGGGS-----CHHHHHHHHGGGEE-EEEEEEEETTT
T ss_pred CCCHH-----HHHHHHHHHHHHcC-CCeEEEEEcCC
Confidence 77654 34578999999999 99999886543
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.15 E-value=7.3e-11 Score=104.18 Aligned_cols=93 Identities=13% Similarity=0.184 Sum_probs=78.8
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCC--CccEEEecchhccCCh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIP--KADAVFMKWILHDWDD 259 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~~~ 259 (350)
.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++.+..+|+.+ +++ .||+|++..+.+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~---- 159 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC---- 159 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCChh----
Confidence 4678999999999999999999988889999999 888888765 5678999999987 554 499999866532
Q ss_pred HHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 260 EACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 260 ~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
.+++++++|+ |||++++.....
T Consensus 160 -----~l~~~~~~L~-pgG~l~~~~~~~ 181 (269)
T 1p91_A 160 -----KAEELARVVK-PGGWVITATPGP 181 (269)
T ss_dssp -----CHHHHHHHEE-EEEEEEEEEECT
T ss_pred -----hHHHHHHhcC-CCcEEEEEEcCH
Confidence 4889999999 999999987654
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.8e-11 Score=103.95 Aligned_cols=98 Identities=14% Similarity=0.097 Sum_probs=79.4
Q ss_pred CCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-C------CCcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-I------PKAD 246 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~------p~~D 246 (350)
.++.+|||||||+|..+..+++.+| +.+++++|. +.+++.+++ .++++++.+|..+ + . ..||
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 3567999999999999999999987 789999999 888877754 4679999999865 2 1 4599
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
+|++... ......++++++++|+ |||.|++.+...+
T Consensus 143 ~v~~~~~-----~~~~~~~l~~~~~~L~-pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 143 LIYIDAD-----KANTDLYYEESLKLLR-EGGLIAVDNVLRR 178 (225)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHHEE-EEEEEEEECSSGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHhcC-CCcEEEEeCCCcC
Confidence 9996442 3345678999999999 9999998665554
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=6.6e-11 Score=108.42 Aligned_cols=96 Identities=18% Similarity=0.152 Sum_probs=77.0
Q ss_pred CCcceEEEecCC------chHHHHHHHHH-CCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-CCC--------CccE
Q 018775 185 DSIQSLADVGGG------TGGALAEIVKS-YPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-AIP--------KADA 247 (350)
Q Consensus 185 ~~~~~vLDvG~G------~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~p--------~~D~ 247 (350)
.+..+||||||| +|..+..++++ +|+.+++++|+ +.+.. ...+|+++.+|+.+ +++ +||+
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~---~~~rI~fv~GDa~dlpf~~~l~~~d~sFDl 291 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV---DELRIRTIQGDQNDAEFLDRIARRYGPFDI 291 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG---CBTTEEEEECCTTCHHHHHHHHHHHCCEEE
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh---cCCCcEEEEecccccchhhhhhcccCCccE
Confidence 456899999999 77777777765 69999999999 66632 35789999999998 443 4999
Q ss_pred EEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 248 VFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 248 i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
|++.. .|++ .+....|++++++|| |||.+++.|...
T Consensus 292 Visdg-sH~~--~d~~~aL~el~rvLK-PGGvlVi~Dl~t 327 (419)
T 3sso_A 292 VIDDG-SHIN--AHVRTSFAALFPHVR-PGGLYVIEDMWT 327 (419)
T ss_dssp EEECS-CCCH--HHHHHHHHHHGGGEE-EEEEEEEECGGG
T ss_pred EEECC-cccc--hhHHHHHHHHHHhcC-CCeEEEEEeccc
Confidence 99864 5654 345688999999999 999999987653
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.12 E-value=3.7e-11 Score=109.74 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=79.6
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC-----------------CCCeEEE
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV-----------------CEGIFHV 234 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------------~~~i~~~ 234 (350)
..++..++ ..++.+|||||||+|.++..+++. .|+.+++++|+ +.+++.+++ ..+++++
T Consensus 95 ~~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~ 172 (336)
T 2b25_A 95 NMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 172 (336)
T ss_dssp HHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence 34455555 677899999999999999999998 57789999999 888776654 2589999
Q ss_pred eccCCCC---CC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 235 GGDMFDA---IP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 235 ~~d~~~~---~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
.+|+.+. ++ .||+|++.. +.+ ..++++++++|+ |||++++....
T Consensus 173 ~~d~~~~~~~~~~~~fD~V~~~~-----~~~--~~~l~~~~~~Lk-pgG~lv~~~~~ 221 (336)
T 2b25_A 173 HKDISGATEDIKSLTFDAVALDM-----LNP--HVTLPVFYPHLK-HGGVCAVYVVN 221 (336)
T ss_dssp ESCTTCCC-------EEEEEECS-----SST--TTTHHHHGGGEE-EEEEEEEEESS
T ss_pred ECChHHcccccCCCCeeEEEECC-----CCH--HHHHHHHHHhcC-CCcEEEEEeCC
Confidence 9999872 33 399999843 222 137899999999 99999987643
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-10 Score=101.93 Aligned_cols=102 Identities=16% Similarity=0.218 Sum_probs=81.5
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC---------CCCeEEEeccCCC-C
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV---------CEGIFHVGGDMFD-A 241 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~-~ 241 (350)
..++..++ ..++.+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ ..+++++.+|+.+ +
T Consensus 89 ~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 89 AQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 34555666 677889999999999999999986 57889999999 888776653 2579999999987 4
Q ss_pred CC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 242 IP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 242 ~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
++ .||+|++ +.++. ..+++++.++|+ |||++++...
T Consensus 167 ~~~~~~D~v~~-----~~~~~--~~~l~~~~~~L~-pgG~l~~~~~ 204 (280)
T 1i9g_A 167 LPDGSVDRAVL-----DMLAP--WEVLDAVSRLLV-AGGVLMVYVA 204 (280)
T ss_dssp CCTTCEEEEEE-----ESSCG--GGGHHHHHHHEE-EEEEEEEEES
T ss_pred CCCCceeEEEE-----CCcCH--HHHHHHHHHhCC-CCCEEEEEeC
Confidence 43 4999998 23333 267999999999 9999998764
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.10 E-value=8.9e-11 Score=106.82 Aligned_cols=96 Identities=20% Similarity=0.221 Sum_probs=75.8
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCC-CCC--CccEEEecchh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFD-AIP--KADAVFMKWIL 254 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~p--~~D~i~~~~vl 254 (350)
.++.+|||||||+|.++..+++. +..+++++|..++++.+++ .++|+++.+|+.+ +.| .||+|++..+.
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred cCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence 35689999999999999988886 4558999998557766553 4689999999998 665 49999997654
Q ss_pred ccCC-hHHHHHHHHHHHhhCCCCCceEEE
Q 018775 255 HDWD-DEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 255 h~~~-~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
+++. ......++++++++|+ |||+++.
T Consensus 116 ~~l~~~~~~~~~l~~~~~~Lk-pgG~li~ 143 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLV-EGGLIFP 143 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEE-EEEEEES
T ss_pred hhcccHHHHHHHHHHHHhhcC-CCeEEEE
Confidence 4432 3345678999999999 9999874
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.10 E-value=4.1e-11 Score=98.00 Aligned_cols=95 Identities=16% Similarity=0.036 Sum_probs=73.2
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCCC-------CccEEEecc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAIP-------KADAVFMKW 252 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~p-------~~D~i~~~~ 252 (350)
++.+|||+|||+|.++..+++..+. ++++|+ +.+++.+++ ..+++++.+|+.+..+ .||+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 5789999999999999999998765 999999 888887765 2279999999876211 599999987
Q ss_pred hhccCChHHHHHHHHHHH--hhCCCCCceEEEEeeee
Q 018775 253 ILHDWDDEACVKILKNCR--QAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~--~~L~~pgG~lli~e~~~ 287 (350)
.+|. ..+ .+++.+. ++|+ |||.+++.....
T Consensus 119 ~~~~-~~~---~~~~~~~~~~~L~-~gG~~~~~~~~~ 150 (171)
T 1ws6_A 119 PYAM-DLA---ALFGELLASGLVE-AGGLYVLQHPKD 150 (171)
T ss_dssp CTTS-CTT---HHHHHHHHHTCEE-EEEEEEEEEETT
T ss_pred CCch-hHH---HHHHHHHhhcccC-CCcEEEEEeCCc
Confidence 7662 222 3455555 9999 999998755443
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.09 E-value=7.3e-11 Score=102.91 Aligned_cols=94 Identities=15% Similarity=0.322 Sum_probs=73.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--------------CCCeEEEeccCCC--C--CC-
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--------------CEGIFHVGGDMFD--A--IP- 243 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~i~~~~~d~~~--~--~p- 243 (350)
..++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ + ++
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 34678999999999999999999999999999998 777765532 2579999999987 2 32
Q ss_pred -CccEEEecchhccCChHHH-----------HHHHHHHHhhCCCCCceEEEE
Q 018775 244 -KADAVFMKWILHDWDDEAC-----------VKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~-----------~~~L~~~~~~L~~pgG~lli~ 283 (350)
.+|.|++. ++++.. ..+++++.++|+ |||.|++.
T Consensus 127 ~~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~Lk-pgG~l~~~ 172 (246)
T 2vdv_E 127 GQLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLK-EGGVVYTI 172 (246)
T ss_dssp TCEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEE-EEEEEEEE
T ss_pred cccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcC-CCCEEEEE
Confidence 37777642 233211 378999999999 99999984
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-10 Score=103.59 Aligned_cols=103 Identities=12% Similarity=0.186 Sum_probs=79.1
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C-CC-CccEEEec-
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A-IP-KADAVFMK- 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~-~p-~~D~i~~~- 251 (350)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+++++.+|+.+ + .+ .||+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 56788999999999999999999875 478999999 888877654 3479999999987 3 23 49999983
Q ss_pred -----chhcc-------CChHH-------HHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 252 -----WILHD-------WDDEA-------CVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 252 -----~vlh~-------~~~~~-------~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
.++++ |+.++ ...+|+++.++|+ |||++++.....
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lk-pGG~lv~stcs~ 249 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLK-PGGILVYSTCSL 249 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEESCC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCC-CCCEEEEEeCCC
Confidence 23433 22222 1589999999999 999998866443
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-10 Score=95.97 Aligned_cols=98 Identities=13% Similarity=0.043 Sum_probs=76.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-C-CCccEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-I-PKADAVFMKW 252 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~-p~~D~i~~~~ 252 (350)
.++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+.+ + . ..||+|++..
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~ 108 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP 108 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECC
Confidence 45789999999999999999987 5679999999 888887764 2479999999887 2 2 3499999976
Q ss_pred hhccCChHHHHHHHHHHH--hhCCCCCceEEEEeeee
Q 018775 253 ILHDWDDEACVKILKNCR--QAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~--~~L~~pgG~lli~e~~~ 287 (350)
.+|. .....+++.+. ++|+ |||.+++.....
T Consensus 109 ~~~~---~~~~~~~~~l~~~~~L~-~gG~l~~~~~~~ 141 (177)
T 2esr_A 109 PYAK---ETIVATIEALAAKNLLS-EQVMVVCETDKT 141 (177)
T ss_dssp SSHH---HHHHHHHHHHHHTTCEE-EEEEEEEEEETT
T ss_pred CCCc---chHHHHHHHHHhCCCcC-CCcEEEEEECCc
Confidence 6542 23456677776 9999 999998865443
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-10 Score=96.49 Aligned_cols=97 Identities=19% Similarity=0.021 Sum_probs=75.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC-------CCCccEEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA-------IPKADAVF 249 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~-------~p~~D~i~ 249 (350)
.++.+|||+|||+|.++..+++ .+..+++++|+ +.+++.+++ .++++++.+|+.+. ...||+|+
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~ 121 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 121 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEE
Confidence 4678999999999999999887 45678999999 888887764 25799999999872 23599999
Q ss_pred ecchhccCChHHHHHHHHHH--HhhCCCCCceEEEEeee
Q 018775 250 MKWILHDWDDEACVKILKNC--RQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 250 ~~~vlh~~~~~~~~~~L~~~--~~~L~~pgG~lli~e~~ 286 (350)
+...+|.... ..+++.+ .++|+ |||.+++....
T Consensus 122 ~~~~~~~~~~---~~~~~~l~~~~~L~-~gG~l~~~~~~ 156 (187)
T 2fhp_A 122 LDPPYAKQEI---VSQLEKMLERQLLT-NEAVIVCETDK 156 (187)
T ss_dssp ECCCGGGCCH---HHHHHHHHHTTCEE-EEEEEEEEEET
T ss_pred ECCCCCchhH---HHHHHHHHHhcccC-CCCEEEEEeCC
Confidence 9877553223 3455666 88899 99999875433
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.6e-11 Score=100.99 Aligned_cols=96 Identities=19% Similarity=0.145 Sum_probs=77.3
Q ss_pred CcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--CCC-CccEEEecch
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--AIP-KADAVFMKWI 253 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~~p-~~D~i~~~~v 253 (350)
+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++ .++++++.+|..+ +.. +||+|++...
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 135 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDCD 135 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEETT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcCC
Confidence 467999999999999999999887 789999999 888887764 3579999999875 321 2999998632
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
......++++++++|+ |||.+++.+...
T Consensus 136 -----~~~~~~~l~~~~~~Lk-pgG~lv~~~~~~ 163 (210)
T 3c3p_A 136 -----VFNGADVLERMNRCLA-KNALLIAVNALR 163 (210)
T ss_dssp -----TSCHHHHHHHHGGGEE-EEEEEEEESSSS
T ss_pred -----hhhhHHHHHHHHHhcC-CCeEEEEECccc
Confidence 2234678999999999 999998755443
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-10 Score=100.44 Aligned_cols=97 Identities=15% Similarity=0.147 Sum_probs=78.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-C----------
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-I---------- 242 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~---------- 242 (350)
.++.+|||||||+|..+..+++.+| ..+++++|. +.+++.+++ .++++++.+|..+ + .
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 4578999999999999999999987 689999999 888877654 3569999999865 2 1
Q ss_pred -------CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 243 -------PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 243 -------p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
..||+|++.... +....+++++.++|+ |||++++.+...
T Consensus 139 ~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~-pgG~lv~~~~~~ 184 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLK-PGGLLIADNVLW 184 (239)
T ss_dssp TTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEE-EEEEEEEECSSG
T ss_pred ccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcC-CCeEEEEEcccc
Confidence 459999987443 345678999999999 999999865444
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.6e-10 Score=95.45 Aligned_cols=103 Identities=17% Similarity=0.255 Sum_probs=74.9
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCCCCeEEEeccCCCCC-----------
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAI----------- 242 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~----------- 242 (350)
.++.+.+. .+.++.+|||+|||+|.++..+++. ..+++++|+.++ ....+++++.+|+.+..
T Consensus 14 ~ei~~~~~-~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 86 (191)
T 3dou_A 14 EFLLDRYR-VVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALRE 86 (191)
T ss_dssp HHHHHHHC-CSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred HHHHHHcC-CCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhhc
Confidence 34555554 2467899999999999999999987 778999998432 12457999999998731
Q ss_pred ---CCccEEEecchhccC---------ChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 243 ---PKADAVFMKWILHDW---------DDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 243 ---p~~D~i~~~~vlh~~---------~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
..||+|++....... ..+....+++.+.++|+ |||+|++..
T Consensus 87 ~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lk-pGG~lv~k~ 139 (191)
T 3dou_A 87 EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLR-NGGNVLLKQ 139 (191)
T ss_dssp HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHcc-CCCEEEEEE
Confidence 369999985322111 01224578999999999 999998633
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=8.5e-10 Score=93.97 Aligned_cols=95 Identities=9% Similarity=-0.030 Sum_probs=79.4
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC-CccEEEecchhcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP-KADAVFMKWILHD 256 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh~ 256 (350)
..+.+|||||||+|-++..+. +..+++++|+ +.+++.++. ..+.++...|... +.| +||++++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 568899999999999998877 8899999999 888887765 5678899999998 555 4999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+.+.+....+ ++.+.|+ +++.++-.+
T Consensus 181 LE~q~~~~~~-~ll~aL~-~~~vvVsfP 206 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLN-TPRMAVSFP 206 (253)
T ss_dssp HHHHSTTHHH-HHHHHCB-CSEEEEEEE
T ss_pred hhhhchhhHH-HHHHHhc-CCCEEEEcC
Confidence 8777655555 8999999 987666544
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.7e-10 Score=98.68 Aligned_cols=96 Identities=14% Similarity=0.095 Sum_probs=71.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC--CC------CeEEE--eccCCC-CCCCccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV--CE------GIFHV--GGDMFD-AIPKADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--~~------~i~~~--~~d~~~-~~p~~D~i~~~~ 252 (350)
+.++.+|||||||+|.++..+++. .+++++|+.++...+++ .. ++.++ .+|+.+ +...||+|++..
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~ 148 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDV 148 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeC
Confidence 567889999999999999998886 68999999446444332 11 68889 999988 533599999976
Q ss_pred hhccCChHH-----HHHHHHHHHhhCCCCCc--eEEEEe
Q 018775 253 ILHDWDDEA-----CVKILKNCRQAIPDKSG--KLVLVE 284 (350)
Q Consensus 253 vlh~~~~~~-----~~~~L~~~~~~L~~pgG--~lli~e 284 (350)
. ++.+... ...+|+.++++|+ ||| .+++-.
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~Lk-pGG~~~fv~kv 185 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKV-KNPSADFVVKV 185 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHH-HCTTCEEEEEE
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhc-cCCCeEEEEEe
Confidence 6 4433221 1247999999999 999 888744
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.05 E-value=9.7e-11 Score=98.92 Aligned_cols=98 Identities=14% Similarity=0.096 Sum_probs=76.4
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------C--CCeEEEeccCCC-C-C---CC-ccEEEe
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------C--EGIFHVGGDMFD-A-I---PK-ADAVFM 250 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~--~~i~~~~~d~~~-~-~---p~-~D~i~~ 250 (350)
++.+|||+|||+|.++..++.+.. .+++++|+ +.+++.+++ . ++++++.+|+.+ . . .. ||+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 467999999999999998777643 58999999 888887764 2 589999999876 2 1 36 999999
Q ss_pred cchhccCChHHHHHHHHHH--HhhCCCCCceEEEEeeeec
Q 018775 251 KWILHDWDDEACVKILKNC--RQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 251 ~~vlh~~~~~~~~~~L~~~--~~~L~~pgG~lli~e~~~~ 288 (350)
...+| . .....+++.+ .++|+ |||.+++......
T Consensus 132 ~~~~~-~--~~~~~~l~~~~~~~~Lk-pgG~l~i~~~~~~ 167 (201)
T 2ift_A 132 DPPFH-F--NLAEQAISLLCENNWLK-PNALIYVETEKDK 167 (201)
T ss_dssp CCCSS-S--CHHHHHHHHHHHTTCEE-EEEEEEEEEESSS
T ss_pred CCCCC-C--ccHHHHHHHHHhcCccC-CCcEEEEEECCCC
Confidence 87755 2 3345778888 66799 9999988665443
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.9e-10 Score=102.41 Aligned_cols=103 Identities=18% Similarity=0.302 Sum_probs=77.4
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP 243 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p 243 (350)
...+++.++ ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +.+
T Consensus 17 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~ 92 (285)
T 1zq9_A 17 INSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP 92 (285)
T ss_dssp HHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred HHHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch
Confidence 345566666 6678899999999999999999984 47999998 888876653 1579999999998 777
Q ss_pred CccEEEecchhccCChHHHHHHHHH--------------H--HhhCCCCCceEE
Q 018775 244 KADAVFMKWILHDWDDEACVKILKN--------------C--RQAIPDKSGKLV 281 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~--------------~--~~~L~~pgG~ll 281 (350)
.||+|+++ ..++|..+....+|.. + +.+++ |||+++
T Consensus 93 ~fD~vv~n-lpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlk-PGg~~y 144 (285)
T 1zq9_A 93 FFDTCVAN-LPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAK-PGDKLY 144 (285)
T ss_dssp CCSEEEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCC-TTCTTC
T ss_pred hhcEEEEe-cCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcC-CCCccc
Confidence 89999884 3444555444455532 2 46899 999764
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-10 Score=99.53 Aligned_cols=92 Identities=16% Similarity=0.225 Sum_probs=76.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCC------CCcEEEecc-hhHhhhCCC-----------CCCeEEEeccCCCCCC--
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYP------HIKGINFDL-PHVVATAPV-----------CEGIFHVGGDMFDAIP-- 243 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p------~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~~~p-- 243 (350)
..++.+|||||||+|.++..+++..+ ..+++++|+ +.+++.+++ ..+++++.+|..++.+
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 45678999999999999999998654 368999998 888887764 2479999999987443
Q ss_pred -CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 244 -KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
.||+|++...+|++. +++.+.|+ |||++++.-
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~Lk-pgG~lvi~~ 194 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLA-SGGRLIVPV 194 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEE-EEEEEEEEE
T ss_pred CCccEEEECCchHHHH--------HHHHHHhc-CCCEEEEEE
Confidence 499999999998755 57889999 999998854
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.9e-10 Score=96.23 Aligned_cols=93 Identities=13% Similarity=0.120 Sum_probs=77.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-----CCCcEEEecc-hhHhhhCCC-----------CCCeEEEeccCCCCC----
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-----PHIKGINFDL-PHVVATAPV-----------CEGIFHVGGDMFDAI---- 242 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~~~---- 242 (350)
..++.+|||||||+|.++..+++.. |+.+++++|. +.+++.+++ ..+++++.+|..+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4567899999999999999999986 5679999999 888877654 257999999998743
Q ss_pred ---CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 243 ---PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 243 ---p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
..||+|++...+|++ ++++.+.|+ |||++++.-.
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~Lk-pgG~lv~~~~ 194 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLA-ENGKLIIPIE 194 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEE-EEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcC-CCcEEEEEEc
Confidence 249999999988864 467889999 9999998654
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-10 Score=100.57 Aligned_cols=97 Identities=13% Similarity=0.081 Sum_probs=78.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-C-------CCc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-I-------PKA 245 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~-------p~~ 245 (350)
.+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++ .++|+++.+|..+ + . ..|
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 3567999999999999999999987 789999999 888877664 3589999999875 2 2 359
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
|+|++... ......+++++.++|+ |||.|++-+...
T Consensus 158 D~V~~d~~-----~~~~~~~l~~~~~~Lk-pGG~lv~d~~~~ 193 (247)
T 1sui_A 158 DFIFVDAD-----KDNYLNYHKRLIDLVK-VGGVIGYDNTLW 193 (247)
T ss_dssp SEEEECSC-----STTHHHHHHHHHHHBC-TTCCEEEECTTG
T ss_pred EEEEEcCc-----hHHHHHHHHHHHHhCC-CCeEEEEecCCc
Confidence 99998543 2235678999999999 999998755443
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.4e-10 Score=99.71 Aligned_cols=97 Identities=13% Similarity=0.150 Sum_probs=78.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC---C------CCcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA---I------PKAD 246 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~---~------p~~D 246 (350)
.++.+|||||||+|..+..+++.+| +.+++++|. +.+++.+++ .++++++.+|+.+. . ..||
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 4578999999999999999999887 789999999 888877654 36899999998651 1 4599
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
+|++... ......+++++.++|+ |||.+++.+...
T Consensus 148 ~v~~d~~-----~~~~~~~l~~~~~~L~-pgG~lv~~~~~~ 182 (229)
T 2avd_A 148 VAVVDAD-----KENCSAYYERCLQLLR-PGGILAVLRVLW 182 (229)
T ss_dssp EEEECSC-----STTHHHHHHHHHHHEE-EEEEEEEECCSG
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcC-CCeEEEEECCCc
Confidence 9998532 3345678999999999 999998866544
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=4.8e-10 Score=100.64 Aligned_cols=95 Identities=13% Similarity=0.112 Sum_probs=70.0
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-----hhHhhhCCC----CCCeEEEec-cCCC-CCCCccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-----PHVVATAPV----CEGIFHVGG-DMFD-AIPKADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~~----~~~i~~~~~-d~~~-~~p~~D~i~~~~ 252 (350)
+.++.+|||||||+|.++..++++ .+++++|. +..++.... .++++++.+ |+.. +...||+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 466789999999999999999987 47888887 433332221 257999999 9987 444699999966
Q ss_pred hhc---cCChHH-HHHHHHHHHhhCCCCCceEEE
Q 018775 253 ILH---DWDDEA-CVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 253 vlh---~~~~~~-~~~~L~~~~~~L~~pgG~lli 282 (350)
.++ +..+.. ...+|+.++++|+ |||.+++
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~Lk-pGG~~v~ 189 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLS-NNTQFCV 189 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCC-TTCEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhC-CCCEEEE
Confidence 543 211221 2258999999999 9998876
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.6e-10 Score=104.83 Aligned_cols=95 Identities=16% Similarity=0.200 Sum_probs=72.6
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCC-CCCC-ccEEEecchhcc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFD-AIPK-ADAVFMKWILHD 256 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~p~-~D~i~~~~vlh~ 256 (350)
++.+|||||||+|.++...+++. ..+++++|..++++.|++ .++|+++.+|+.+ +.|. +|+|++..+-+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 46799999999999988766654 347899998556666553 6889999999998 6664 999998544333
Q ss_pred CC-hHHHHHHHHHHHhhCCCCCceEEE
Q 018775 257 WD-DEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 257 ~~-~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
+. ......++....+.|+ |||.++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lk-p~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLK-EGGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEE-EEEEEES
T ss_pred ccccchhhhHHHHHHhhCC-CCceECC
Confidence 22 2246678888889999 9999874
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=4.7e-10 Score=99.20 Aligned_cols=96 Identities=9% Similarity=0.014 Sum_probs=71.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC--CC------CeEEE--eccCCC-CCCCccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV--CE------GIFHV--GGDMFD-AIPKADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--~~------~i~~~--~~d~~~-~~p~~D~i~~~~ 252 (350)
+.++.+|||||||+|.++..+++. .+++++|+.++...+++ .. +++++ .+|+.+ +...||+|++..
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI 156 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence 567889999999999999999887 58999999446444432 11 68899 999987 533599999976
Q ss_pred hhccCChH----H-HHHHHHHHHhhCCCCCc--eEEEEe
Q 018775 253 ILHDWDDE----A-CVKILKNCRQAIPDKSG--KLVLVE 284 (350)
Q Consensus 253 vlh~~~~~----~-~~~~L~~~~~~L~~pgG--~lli~e 284 (350)
. +..+.. . ...+|+.++++|+ ||| .+++..
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~Lk-pGG~~~~v~~~ 193 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLE-YNQGCGFCVKV 193 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHH-HSTTCEEEEEE
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhc-cCCCcEEEEEe
Confidence 6 443221 1 1247999999999 999 888743
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1e-11 Score=107.80 Aligned_cols=136 Identities=18% Similarity=0.142 Sum_probs=97.3
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC-CccEEEecchhc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP-KADAVFMKWILH 255 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh 255 (350)
++.+|||+|||+|.++..+++.. .+++++|+ +.+++.++. ..+++++.+|+.+ +.+ .||+|++...+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 57899999999999999999874 78999999 888887764 1589999999988 422 599999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEE
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKI 335 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~ 335 (350)
+.++.. ..+.+++++|+ |||.+++... ...... .. . .. .+....+++..++...|...+..
T Consensus 156 ~~~~~~--~~~~~~~~~L~-pgG~~i~~~~-~~~~~~-----~~------~--~l--p~~~~~~~~~~~l~~~g~~~i~~ 216 (241)
T 3gdh_A 156 GPDYAT--AETFDIRTMMS-PDGFEIFRLS-KKITNN-----IV------Y--FL--PRNADIDQVASLAGPGGQVEIEQ 216 (241)
T ss_dssp SGGGGG--SSSBCTTTSCS-SCHHHHHHHH-HHHCSC-----EE------E--EE--ETTBCHHHHHHTTCTTCCEEEEE
T ss_pred Ccchhh--hHHHHHHhhcC-CcceeHHHHH-HhhCCc-----eE------E--EC--CCCCCHHHHHHHhccCCCEEEEe
Confidence 866543 36778999999 9998554221 111000 00 0 00 12335788888888888776665
Q ss_pred EEcCCce
Q 018775 336 ISMPALY 342 (350)
Q Consensus 336 ~~~~~~~ 342 (350)
....+..
T Consensus 217 ~~~~~~~ 223 (241)
T 3gdh_A 217 NFLNNKL 223 (241)
T ss_dssp EEETTEE
T ss_pred hhhcCcc
Confidence 5555443
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.5e-10 Score=92.34 Aligned_cols=96 Identities=19% Similarity=0.262 Sum_probs=72.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCC---------CcEEEecchhHhhhCCCCCCeEEE-eccCCC-C--------CC-
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPH---------IKGINFDLPHVVATAPVCEGIFHV-GGDMFD-A--------IP- 243 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~~i~~~-~~d~~~-~--------~p- 243 (350)
+.++.+|||||||+|.++..+++.++. .+++++|+.++. ...+++++ .+|+.. + .+
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 95 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----PLEGATFLCPADVTDPRTSQRILEVLPG 95 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----CCTTCEEECSCCTTSHHHHHHHHHHSGG
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----cCCCCeEEEeccCCCHHHHHHHHHhcCC
Confidence 456889999999999999999999765 789999984421 13468899 999876 2 22
Q ss_pred -CccEEEecchhccC----ChHH-----HHHHHHHHHhhCCCCCceEEEEe
Q 018775 244 -KADAVFMKWILHDW----DDEA-----CVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 244 -~~D~i~~~~vlh~~----~~~~-----~~~~L~~~~~~L~~pgG~lli~e 284 (350)
.||+|++...+|.. .+.. ...++++++++|+ |||++++..
T Consensus 96 ~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lv~~~ 145 (196)
T 2nyu_A 96 RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQ-PGGTFLCKT 145 (196)
T ss_dssp GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhc-CCCEEEEEe
Confidence 49999986544421 1211 1478999999999 999998864
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.02 E-value=8.1e-10 Score=101.59 Aligned_cols=131 Identities=17% Similarity=0.127 Sum_probs=97.3
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CC-
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AI- 242 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~- 242 (350)
+..++.... ..++.+|||+|||+|.+++.++... |+.+++++|+ +.+++.++. ..+++++.+|+.+ +.
T Consensus 192 a~~l~~~~~--~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~ 269 (354)
T 3tma_A 192 AQALLRLAD--ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF 269 (354)
T ss_dssp HHHHHHHTT--CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT
T ss_pred HHHHHHHhC--CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc
Confidence 344555555 5678899999999999999999987 8899999999 888887764 2389999999998 43
Q ss_pred -CCccEEEecchhccC-C-hH----HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCccc
Q 018775 243 -PKADAVFMKWILHDW-D-DE----ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKE 315 (350)
Q Consensus 243 -p~~D~i~~~~vlh~~-~-~~----~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (350)
+.||+|+++--.+.. . .. ....++++++++|+ |||+++++.. +
T Consensus 270 ~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lk-pgG~l~i~t~-------------------------~---- 319 (354)
T 3tma_A 270 FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLP-PGGRVALLTL-------------------------R---- 319 (354)
T ss_dssp CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSC-TTCEEEEEES-------------------------C----
T ss_pred cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcC-CCcEEEEEeC-------------------------C----
Confidence 348999995332211 1 11 12678999999999 9999997531 1
Q ss_pred CCHHHHHHHHHhcCCceeEEEEc
Q 018775 316 RTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 316 ~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
.+.++++++ .||+..+.+.+
T Consensus 320 --~~~~~~~~~-~g~~~~~~~~l 339 (354)
T 3tma_A 320 --PALLKRALP-PGFALRHARVV 339 (354)
T ss_dssp --HHHHHHHCC-TTEEEEEEEEC
T ss_pred --HHHHHHHhh-cCcEEEEEEEE
Confidence 344555555 88888887776
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-09 Score=96.61 Aligned_cols=97 Identities=11% Similarity=0.117 Sum_probs=71.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc--hhHhhhCCC------------C----CCeEEEeccCCCC---C
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL--PHVVATAPV------------C----EGIFHVGGDMFDA---I 242 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~------------~----~~i~~~~~d~~~~---~ 242 (350)
..++.+|||||||+|.++..+++.. ..+++++|+ +.+++.+++ . ++++++..|..+. .
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 3467899999999999999888763 348999998 466665432 1 3788886665431 1
Q ss_pred ------CCccEEEecchhccCChHHHHHHHHHHHhhCC---C-CCceEEEE
Q 018775 243 ------PKADAVFMKWILHDWDDEACVKILKNCRQAIP---D-KSGKLVLV 283 (350)
Q Consensus 243 ------p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~---~-pgG~lli~ 283 (350)
..||+|++..++|+. ++...+++.++++|+ + |||+++++
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~--~~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFH--QAHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCG--GGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred HhhccCCCCCEEEEeCcccCh--HHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 349999999999984 445688999999887 2 39988763
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-10 Score=112.29 Aligned_cols=102 Identities=13% Similarity=0.106 Sum_probs=83.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC---CCC--CccEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD---AIP--KADAVFMKW 252 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~---~~p--~~D~i~~~~ 252 (350)
.++.+|||||||.|.++..|++. +.+++++|. +.+++.|+. ...|+|.++++.+ ..+ .||+|++..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 35689999999999999999997 678999999 888887653 2469999998876 232 499999999
Q ss_pred hhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 253 ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
+|||+++++...-+.++.+.|+ ++|+.++...+..+
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~-~~~~~~~~~~~~~e 178 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLA-DVTQAVILELAVKE 178 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHH-HHSSEEEEECCCTT
T ss_pred chhcCCCHHHHHHHHHHHHHhc-cccceeeEEecccc
Confidence 9999988775566677888889 88888887765544
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.01 E-value=8e-10 Score=96.11 Aligned_cols=99 Identities=16% Similarity=0.209 Sum_probs=79.4
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCC-C--
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAI-P-- 243 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~-p-- 243 (350)
.++..++ ..++.+|||+|||+|.++..+++. ..+++++|. +.+++.+++ ..++++..+|+.+.. +
T Consensus 82 ~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 157 (248)
T 2yvl_A 82 YIALKLN--LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEG 157 (248)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTT
T ss_pred HHHHhcC--CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCC
Confidence 4445555 667889999999999999999998 679999998 888877664 268999999999854 4
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
.||+|++ +.++. ..+++++.++|+ |||++++...
T Consensus 158 ~~D~v~~-----~~~~~--~~~l~~~~~~L~-~gG~l~~~~~ 191 (248)
T 2yvl_A 158 IFHAAFV-----DVREP--WHYLEKVHKSLM-EGAPVGFLLP 191 (248)
T ss_dssp CBSEEEE-----CSSCG--GGGHHHHHHHBC-TTCEEEEEES
T ss_pred cccEEEE-----CCcCH--HHHHHHHHHHcC-CCCEEEEEeC
Confidence 4999997 23332 367999999999 9999998664
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.01 E-value=3e-10 Score=95.96 Aligned_cols=97 Identities=11% Similarity=0.048 Sum_probs=74.4
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC--CCC--CccEEEecchh
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD--AIP--KADAVFMKWIL 254 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~--~~p--~~D~i~~~~vl 254 (350)
++.+|||+|||+|.++..++++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 467999999999999998887653 38999999 889887764 2589999999876 332 49999997665
Q ss_pred ccCChHHHHHHHHHHHh--hCCCCCceEEEEeeee
Q 018775 255 HDWDDEACVKILKNCRQ--AIPDKSGKLVLVEIVV 287 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~--~L~~pgG~lli~e~~~ 287 (350)
| .. ....+++.+.+ +|+ |||.+++.....
T Consensus 133 ~-~~--~~~~~l~~l~~~~~L~-pgG~l~i~~~~~ 163 (202)
T 2fpo_A 133 R-RG--LLEETINLLEDNGWLA-DEALIYVESEVE 163 (202)
T ss_dssp S-TT--THHHHHHHHHHTTCEE-EEEEEEEEEEGG
T ss_pred C-CC--cHHHHHHHHHhcCccC-CCcEEEEEECCC
Confidence 4 22 33467777765 599 999998765443
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=7.6e-10 Score=94.97 Aligned_cols=93 Identities=19% Similarity=0.099 Sum_probs=75.9
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC-----------CCCeEEEeccCCCCC---CCccE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV-----------CEGIFHVGGDMFDAI---PKADA 247 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~~~---p~~D~ 247 (350)
..++.+|||||||+|..+..+++.. +..+++++|+ +.+++.+++ ..+++++.+|..... ..||+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 4567899999999999999999884 6679999999 888877653 247999999988632 24999
Q ss_pred EEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 248 VFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 248 i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
|++...++++. +++++.|+ |||++++...
T Consensus 155 i~~~~~~~~~~--------~~~~~~Lk-pgG~lv~~~~ 183 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLK-PGGRLILPVG 183 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEE-EEEEEEEEES
T ss_pred EEECCchHHHH--------HHHHHhcC-CCcEEEEEEe
Confidence 99988887643 57889999 9999998643
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.4e-10 Score=101.68 Aligned_cols=98 Identities=15% Similarity=0.120 Sum_probs=77.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCCC---CC-CccEEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFDA---IP-KADAVF 249 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~~---~p-~~D~i~ 249 (350)
..+.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ ..+++++.+|..+. .+ .||+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999998878889999999 888876543 36899999998761 23 499999
Q ss_pred ecchhccCChHHH--HHHHHHHHhhCCCCCceEEEE
Q 018775 250 MKWILHDWDDEAC--VKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 250 ~~~vlh~~~~~~~--~~~L~~~~~~L~~pgG~lli~ 283 (350)
+....+.-+.... .+++++++++|+ |||.+++.
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~-pgG~lv~~ 191 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALK-PNGYCVAQ 191 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEE-EEEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcC-CCcEEEEE
Confidence 8554333222222 589999999999 99999874
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.4e-10 Score=98.09 Aligned_cols=96 Identities=17% Similarity=0.096 Sum_probs=77.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-C-------CCc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-I-------PKA 245 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~-------p~~ 245 (350)
.+..+|||||||+|..+..+++..| +.+++++|. +.+++.+++ .++|+++.+|..+ + . ..|
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 4567999999999999999999987 789999999 888877654 3579999999875 2 2 349
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
|+|++.. +......+++++.++|+ |||.+++-+..
T Consensus 149 D~I~~d~-----~~~~~~~~l~~~~~~L~-pGG~lv~d~~~ 183 (237)
T 3c3y_A 149 DFGFVDA-----DKPNYIKYHERLMKLVK-VGGIVAYDNTL 183 (237)
T ss_dssp EEEEECS-----CGGGHHHHHHHHHHHEE-EEEEEEEECTT
T ss_pred CEEEECC-----chHHHHHHHHHHHHhcC-CCeEEEEecCC
Confidence 9999753 23345789999999999 99998775543
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.7e-10 Score=99.29 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=81.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCC-CC-CccEEEecchh
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDA-IP-KADAVFMKWIL 254 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~-~p-~~D~i~~~~vl 254 (350)
+.++.+|||+|||+|.++..+++..+..+++++|+ +.+++.+++ ..++.++.+|+.+. .+ .||+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45678999999999999999999988889999999 888887764 25688999999873 32 49999986533
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
....+++++.+.|+ |||.+++.+....+
T Consensus 197 ------~~~~~l~~~~~~Lk-pgG~l~~s~~~~~~ 224 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLK-DRGVIHYHETVAEK 224 (272)
T ss_dssp ------SGGGGHHHHHHHEE-EEEEEEEEEEEEGG
T ss_pred ------cHHHHHHHHHHHcC-CCCEEEEEEcCccc
Confidence 33467999999999 99999988876644
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.96 E-value=2.2e-10 Score=101.56 Aligned_cols=98 Identities=19% Similarity=0.163 Sum_probs=76.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC--C-C-CCccEEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD--A-I-PKADAVF 249 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~--~-~-p~~D~i~ 249 (350)
..+.+|||||||+|.++..+++..+..+++++|+ +.+++.+++ .+|++++.+|..+ + . ..||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 3568999999999999999998767789999999 888876643 4689999999876 2 2 2499999
Q ss_pred ecchhccCChHH--HHHHHHHHHhhCCCCCceEEEE
Q 018775 250 MKWILHDWDDEA--CVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 250 ~~~vlh~~~~~~--~~~~L~~~~~~L~~pgG~lli~ 283 (350)
+...-+..+... ..+++++++++|+ |||.+++.
T Consensus 154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~-pgG~lv~~ 188 (275)
T 1iy9_A 154 VDSTEPVGPAVNLFTKGFYAGIAKALK-EDGIFVAQ 188 (275)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEE-EEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHHhcC-CCcEEEEE
Confidence 954433222111 2478999999999 99999874
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.3e-10 Score=98.80 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=77.9
Q ss_pred CcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-C------CCccE
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-I------PKADA 247 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-~------p~~D~ 247 (350)
++.+|||||||+|..+..+++..| +.+++++|. +.+++.+++ .++|+++.+|..+ + . ..||+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 467999999999999999999887 789999999 888877764 3579999999754 1 1 45999
Q ss_pred EEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 248 VFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 248 i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
|++... ......+++++.++|+ |||.|++.+....
T Consensus 152 V~~d~~-----~~~~~~~l~~~~~~Lk-pgG~lv~~~~~~~ 186 (232)
T 3cbg_A 152 IFIDAD-----KRNYPRYYEIGLNLLR-RGGLMVIDNVLWH 186 (232)
T ss_dssp EEECSC-----GGGHHHHHHHHHHTEE-EEEEEEEECTTGG
T ss_pred EEECCC-----HHHHHHHHHHHHHHcC-CCeEEEEeCCCcC
Confidence 997543 2345678999999999 9999988665443
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.9e-10 Score=100.28 Aligned_cols=97 Identities=16% Similarity=0.174 Sum_probs=74.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC----------------CCCCeEEEeccCCCC---CCC
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP----------------VCEGIFHVGGDMFDA---IPK 244 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----------------~~~~i~~~~~d~~~~---~p~ 244 (350)
..+.+|||||||+|.++..+++. +..+++++|+ +.+++.++ ...+++++.+|..+. ...
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 35689999999999999999998 8889999999 88877543 236899999998651 235
Q ss_pred ccEEEecchhccCChHH--HHHHHHHHHhhCCCCCceEEEE
Q 018775 245 ADAVFMKWILHDWDDEA--CVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~--~~~~L~~~~~~L~~pgG~lli~ 283 (350)
||+|++....+.-+... ..+++++++++|+ |||.+++.
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~-pgG~lv~~ 192 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALN-NPGIYVTQ 192 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEE-EEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcC-CCcEEEEE
Confidence 99999865433222122 2678999999999 99999875
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.1e-10 Score=101.93 Aligned_cols=99 Identities=18% Similarity=0.185 Sum_probs=75.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC--CC--CCccEEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD--AI--PKADAVF 249 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~--~~--p~~D~i~ 249 (350)
..+.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ ..+++++.+|..+ +. ..||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999878889999999 888876653 4689999999875 22 2499999
Q ss_pred ecchhccCChH--HHHHHHHHHHhhCCCCCceEEEEe
Q 018775 250 MKWILHDWDDE--ACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 250 ~~~vlh~~~~~--~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+....+.-+.. ...+++++++++|+ |||.+++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALK-EDGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEE-EEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccC-CCeEEEEec
Confidence 85543321111 12478999999999 999998744
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=4.7e-10 Score=101.30 Aligned_cols=99 Identities=18% Similarity=0.170 Sum_probs=78.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----------CCCeEEEeccCCC--C--CCCccEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----------CEGIFHVGGDMFD--A--IPKADAV 248 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~--~--~p~~D~i 248 (350)
..+.+|||||||+|.++..+++..+..+++++|+ +.+++.+++ ..+++++.+|..+ + ...||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 4568999999999999999999878889999999 888776543 3589999999876 2 2249999
Q ss_pred Eecchhcc---CChHH--HHHHHHHHHhhCCCCCceEEEEe
Q 018775 249 FMKWILHD---WDDEA--CVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 249 ~~~~vlh~---~~~~~--~~~~L~~~~~~L~~pgG~lli~e 284 (350)
++....|. -+... ..+++++++++|+ |||.+++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLN-PGGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEE-EEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcC-CCcEEEEEc
Confidence 99766543 11111 3588999999999 999999853
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.95 E-value=3.9e-10 Score=102.49 Aligned_cols=98 Identities=17% Similarity=0.139 Sum_probs=76.7
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC---CCC--CccEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD---AIP--KADAV 248 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~~p--~~D~i 248 (350)
..+.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ ..+++++.+|..+ ..+ .||+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4568999999999999999999878889999999 888887653 3589999999875 222 49999
Q ss_pred EecchhccCChHH--HHHHHHHHHhhCCCCCceEEEE
Q 018775 249 FMKWILHDWDDEA--CVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 249 ~~~~vlh~~~~~~--~~~~L~~~~~~L~~pgG~lli~ 283 (350)
++...-+.-+.+. ...++++++++|+ |||.|++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALR-PGGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEE-EEEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcC-CCcEEEEe
Confidence 9854321111111 3689999999999 99999874
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.94 E-value=4e-10 Score=101.55 Aligned_cols=98 Identities=19% Similarity=0.186 Sum_probs=73.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC--C--CCCccEEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD--A--IPKADAVF 249 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~--~--~p~~D~i~ 249 (350)
..+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ ..+++++.+|..+ + ...||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 3568999999999999999999878889999999 888876543 3589999999876 2 22499999
Q ss_pred ecchhccCChH-HH--HHHHHHHHhhCCCCCceEEEEe
Q 018775 250 MKWILHDWDDE-AC--VKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 250 ~~~vlh~~~~~-~~--~~~L~~~~~~L~~pgG~lli~e 284 (350)
+...-+ +... .. ..++++++++|+ |||.+++..
T Consensus 187 ~d~~~~-~~~~~~l~t~~~l~~~~~~Lk-pgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDP-VGPAESLFGQSYYELLRDALK-EDGILSSQG 222 (314)
T ss_dssp ECCC--------------HHHHHHHHEE-EEEEEEEEC
T ss_pred EcCCCC-CCcchhhhHHHHHHHHHhhcC-CCeEEEEEC
Confidence 855332 3222 21 689999999999 999998743
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=4.9e-10 Score=101.46 Aligned_cols=97 Identities=15% Similarity=0.145 Sum_probs=76.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCCC---CC-CccEEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFDA---IP-KADAVF 249 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~~---~p-~~D~i~ 249 (350)
..+.+|||||||+|.++..+++..|..+++++|+ +.+++.+++ ..+++++.+|..+. .+ .||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 3568999999999999999998778889999999 888876543 35899999998762 22 499999
Q ss_pred ecchhccCCh-HHH--HHHHHHHHhhCCCCCceEEEE
Q 018775 250 MKWILHDWDD-EAC--VKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 250 ~~~vlh~~~~-~~~--~~~L~~~~~~L~~pgG~lli~ 283 (350)
+...- .+.. ... .+++++++++|+ |||.+++.
T Consensus 195 ~d~~~-p~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~ 229 (321)
T 2pt6_A 195 VDSSD-PIGPAETLFNQNFYEKIYNALK-PNGYCVAQ 229 (321)
T ss_dssp EECCC-SSSGGGGGSSHHHHHHHHHHEE-EEEEEEEE
T ss_pred ECCcC-CCCcchhhhHHHHHHHHHHhcC-CCcEEEEE
Confidence 85432 2221 221 688999999999 99999874
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-09 Score=95.39 Aligned_cols=89 Identities=11% Similarity=0.078 Sum_probs=74.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCCCCCCccEEEecch
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFDAIPKADAVFMKWI 253 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~~~p~~D~i~~~~v 253 (350)
..+.+|||||||+|.++..+++. + .+++++|+ +.+++.+++ .++++++.+|..+-...||+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d-- 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL-- 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES--
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC--
Confidence 35689999999999999999988 7 89999999 899998875 258999999998733569999985
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
.+++. .++++++++|+ |||.+++.
T Consensus 147 ---~~dp~--~~~~~~~~~L~-pgG~lv~~ 170 (262)
T 2cmg_A 147 ---QEPDI--HRIDGLKRMLK-EDGVFISV 170 (262)
T ss_dssp ---SCCCH--HHHHHHHTTEE-EEEEEEEE
T ss_pred ---CCChH--HHHHHHHHhcC-CCcEEEEE
Confidence 23332 48999999999 99999874
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=6.4e-10 Score=99.59 Aligned_cols=97 Identities=18% Similarity=0.195 Sum_probs=73.2
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC--C-C-CCccEEEe
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD--A-I-PKADAVFM 250 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~--~-~-p~~D~i~~ 250 (350)
.+.+|||||||+|.++..+++..+..+++++|+ +.+++.+++ ..+++++.+|..+ + . ..||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 468999999999999999999878889999999 888776543 3689999999765 2 2 24999998
Q ss_pred cchhccCChH---HHHHHHHHHHhhCCCCCceEEEE
Q 018775 251 KWILHDWDDE---ACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 251 ~~vlh~~~~~---~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
...-+..... ...+++++++++|+ |||.+++.
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~ 204 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALK-EDGVFSAE 204 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEE-EEEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcC-CCcEEEEE
Confidence 4322201111 12578999999999 99999874
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.87 E-value=4.6e-09 Score=99.58 Aligned_cols=109 Identities=13% Similarity=0.124 Sum_probs=83.7
Q ss_pred HHhcccCCCCcceEEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C--CC--
Q 018775 177 VSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A--IP-- 243 (350)
Q Consensus 177 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~p-- 243 (350)
...++ ..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..+++++.+|+.+ + ++
T Consensus 252 ~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 329 (450)
T 2yxl_A 252 SIVLD--PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEE 329 (450)
T ss_dssp HHHHC--CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSS
T ss_pred HHhcC--CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccC
Confidence 33444 567889999999999999999999877 79999999 777776543 3479999999987 3 44
Q ss_pred CccEEEe------cchhccCChH-------HH-------HHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 244 KADAVFM------KWILHDWDDE-------AC-------VKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 244 ~~D~i~~------~~vlh~~~~~-------~~-------~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
.||+|++ ..+++..++. +. ..+|+++.+.|+ |||+|++.+....
T Consensus 330 ~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk-pGG~lvy~tcs~~ 393 (450)
T 2yxl_A 330 VADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVK-PGGRLLYTTCSIF 393 (450)
T ss_dssp CEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEE-EEEEEEEEESCCC
T ss_pred CCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCCCC
Confidence 3999996 3455543332 11 578999999999 9999998775543
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=4.3e-09 Score=93.37 Aligned_cols=115 Identities=13% Similarity=0.069 Sum_probs=82.8
Q ss_pred CCCcceEEEecC------CchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCCCCCeEE-EeccCCC-CCC-CccEEEecc
Q 018775 184 FDSIQSLADVGG------GTGGALAEIVKSYP-HIKGINFDL-PHVVATAPVCEGIFH-VGGDMFD-AIP-KADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~------G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~i~~-~~~d~~~-~~p-~~D~i~~~~ 252 (350)
.+++.+|||+|| |+|. ..+++..| +.+++++|+ +. + .++++ +.+|+.+ +++ .||+|++..
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v------~~v~~~i~gD~~~~~~~~~fD~Vvsn~ 131 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V------SDADSTLIGDCATVHTANKWDLIISDM 131 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B------CSSSEEEESCGGGCCCSSCEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C------CCCEEEEECccccCCccCcccEEEEcC
Confidence 567889999999 5577 44566666 689999999 54 2 36889 9999998 544 499999853
Q ss_pred hhcc--------C-ChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHH
Q 018775 253 ILHD--------W-DDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMK 323 (350)
Q Consensus 253 vlh~--------~-~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ 323 (350)
..+. . .......++++++++|+ |||++++..... + ..+++.+
T Consensus 132 ~~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lk-pGG~~v~~~~~~-------------------------~---~~~~l~~ 182 (290)
T 2xyq_A 132 YDPRTKHVTKENDSKEGFFTYLCGFIKQKLA-LGGSIAVKITEH-------------------------S---WNADLYK 182 (290)
T ss_dssp CCCC---CCSCCCCCCTHHHHHHHHHHHHEE-EEEEEEEEECSS-------------------------S---CCHHHHH
T ss_pred CccccccccccccchHHHHHHHHHHHHHhcC-CCcEEEEEEecc-------------------------C---CHHHHHH
Confidence 3221 0 01234578999999999 999999743110 0 1257888
Q ss_pred HHHhcCCceeEEE
Q 018775 324 LLEQGGFHRCKII 336 (350)
Q Consensus 324 ll~~aGf~~~~~~ 336 (350)
++++.||..+++.
T Consensus 183 ~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 183 LMGHFSWWTAFVT 195 (290)
T ss_dssp HHTTEEEEEEEEE
T ss_pred HHHHcCCcEEEEE
Confidence 8999999887776
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=4.7e-09 Score=92.54 Aligned_cols=120 Identities=12% Similarity=0.059 Sum_probs=91.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CC-CCccEEEecch
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AI-PKADAVFMKWI 253 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~-p~~D~i~~~~v 253 (350)
..++.+|||+|||+|.+++.+++. ...+++.+|+ |.+++.+++ .++++++.+|..+ .. ..||.|++..-
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 357899999999999999999887 3568999999 888887664 6789999999988 32 24999987532
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCcee
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRC 333 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~ 333 (350)
.....+|..+.++|+ |||.|.+.+....+.. .....+.++++.++.|+.+.
T Consensus 202 ------~~~~~~l~~a~~~lk-~gG~ih~~~~~~e~~~----------------------~~~~~e~i~~~~~~~g~~v~ 252 (278)
T 3k6r_A 202 ------VRTHEFIPKALSIAK-DGAIIHYHNTVPEKLM----------------------PREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp ------SSGGGGHHHHHHHEE-EEEEEEEEEEEEGGGT----------------------TTTTHHHHHHHHHHTTCEEE
T ss_pred ------CcHHHHHHHHHHHcC-CCCEEEEEeeeccccc----------------------chhHHHHHHHHHHHcCCcEE
Confidence 123467889999999 9999988776553321 11235777888899998753
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-09 Score=96.31 Aligned_cols=104 Identities=11% Similarity=0.099 Sum_probs=78.1
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CC-----C-CccEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AI-----P-KADAV 248 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~-----p-~~D~i 248 (350)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++ ..+++++.+|+.+ +. + .||+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 567889999999999999999998776 79999999 887776653 3479999999887 32 3 59999
Q ss_pred Eec------chhcc---CCh-------HHHHHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 249 FMK------WILHD---WDD-------EACVKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 249 ~~~------~vlh~---~~~-------~~~~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
++. .+++. |.. +....+|+++.+.|+ |||++++......
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lv~stcs~~ 215 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLK-KDGELVYSTCSME 215 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEE-EEEEEEEEESCCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCCC
Confidence 985 22221 111 123588999999999 9999998765443
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.83 E-value=3.1e-09 Score=89.33 Aligned_cols=89 Identities=18% Similarity=0.142 Sum_probs=67.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCCCCCCccEEEecchhccCChHH
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFDAIPKADAVFMKWILHDWDDEA 261 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~~p~~D~i~~~~vlh~~~~~~ 261 (350)
..++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+....||+|++...+|++++..
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~~~~~ 127 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNPPFGSVVKHS 127 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECCCC-------
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCCCCeeEEEECCCchhccCch
Confidence 346789999999999999999887 4457999999 888888765 2379999999987224699999999999887654
Q ss_pred HHHHHHHHHhhC
Q 018775 262 CVKILKNCRQAI 273 (350)
Q Consensus 262 ~~~~L~~~~~~L 273 (350)
...+++++.+.+
T Consensus 128 ~~~~l~~~~~~~ 139 (200)
T 1ne2_A 128 DRAFIDKAFETS 139 (200)
T ss_dssp CHHHHHHHHHHE
T ss_pred hHHHHHHHHHhc
Confidence 457888888876
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1e-08 Score=96.29 Aligned_cols=104 Identities=12% Similarity=0.048 Sum_probs=77.8
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCCC--CCccEEEe
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDAI--PKADAVFM 250 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~--p~~D~i~~ 250 (350)
.+++.+. ..+..+|||+|||+|.++..+++++ +..+++++|+ +.+++.+ .+++++.+|+.+.. ..||+|++
T Consensus 30 ~~~~~~~--~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~ 104 (421)
T 2ih2_A 30 FMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILG 104 (421)
T ss_dssp HHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEE
T ss_pred HHHHhhc--cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEE
Confidence 3444444 3345699999999999999999886 6789999999 8888877 57999999999832 35999999
Q ss_pred c--chh--------ccCChHHH-----------------HHHHHHHHhhCCCCCceEEEEe
Q 018775 251 K--WIL--------HDWDDEAC-----------------VKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 251 ~--~vl--------h~~~~~~~-----------------~~~L~~~~~~L~~pgG~lli~e 284 (350)
+ +.- +|++++.. ..+++++.+.|+ |||+++++-
T Consensus 105 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk-~~G~~~~i~ 164 (421)
T 2ih2_A 105 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLK-PGGVLVFVV 164 (421)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhC-CCCEEEEEE
Confidence 5 111 11222221 267999999999 999998765
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.82 E-value=4.9e-09 Score=95.94 Aligned_cols=99 Identities=14% Similarity=0.182 Sum_probs=79.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCC-----CcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCCC--CccEEEec
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPH-----IKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAIP--KADAVFMK 251 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~p--~~D~i~~~ 251 (350)
.++.+|||+|||+|.++..+++..+. .+++++|+ +.+++.++. ..++.++.+|.+.+.+ .||+|+++
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 208 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence 45789999999999999999988764 68999999 888877754 3368999999988433 59999998
Q ss_pred chhccCChHHH----------------HHHHHHHHhhCCCCCceEEEEe
Q 018775 252 WILHDWDDEAC----------------VKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 252 ~vlh~~~~~~~----------------~~~L~~~~~~L~~pgG~lli~e 284 (350)
--+++++.++. ..+++++.+.|+ |||+++++.
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk-~gG~~~~v~ 256 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTK-PGGYLFFLV 256 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhC-CCCEEEEEE
Confidence 77666654432 268999999999 999988755
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.80 E-value=6.7e-09 Score=94.34 Aligned_cols=94 Identities=13% Similarity=0.028 Sum_probs=73.3
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CC-CeEEEeccCCCC-------CCCccEEE
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CE-GIFHVGGDMFDA-------IPKADAVF 249 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~-~i~~~~~d~~~~-------~p~~D~i~ 249 (350)
++.+|||+|||+|.++..+++... +++++|+ +.+++.+++ .+ +++++.+|+++. ...||+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 567999999999999999998643 8999999 888887764 23 599999999872 12599999
Q ss_pred ecch----------hccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 250 MKWI----------LHDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 250 ~~~v----------lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+.-- ++. .++...+++++.++|+ |||.+++..
T Consensus 231 ~dPP~~~~~~~~~~~~~--~~~~~~ll~~~~~~Lk-pgG~lli~~ 272 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQL--FDHLPLMLDICREILS-PKALGLVLT 272 (332)
T ss_dssp ECCCSEEECTTCCEEEH--HHHHHHHHHHHHHTBC-TTCCEEEEE
T ss_pred ECCccccCCchHHHHHH--HHHHHHHHHHHHHhcC-cCcEEEEEE
Confidence 8321 111 2345689999999999 999977654
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.80 E-value=3.7e-08 Score=83.10 Aligned_cols=90 Identities=17% Similarity=0.014 Sum_probs=71.3
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCCCCccEEEecchhccC
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAIPKADAVFMKWILHDW 257 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~p~~D~i~~~~vlh~~ 257 (350)
..++.+|||+|||+|.++..+++..+ .+++++|+ +.+++.++. ..+++++.+|+.+-...||+|++...+|.+
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~ 125 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQ 125 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSS
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCccc
Confidence 34678999999999999999998733 37999999 888887764 127999999998832369999998888877
Q ss_pred ChHHHHHHHHHHHhhCC
Q 018775 258 DDEACVKILKNCRQAIP 274 (350)
Q Consensus 258 ~~~~~~~~L~~~~~~L~ 274 (350)
.......+++++.+.+.
T Consensus 126 ~~~~~~~~l~~~~~~l~ 142 (207)
T 1wy7_A 126 RKHADRPFLLKAFEISD 142 (207)
T ss_dssp STTTTHHHHHHHHHHCS
T ss_pred cCCchHHHHHHHHHhcC
Confidence 65555678888888873
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.80 E-value=7.4e-09 Score=92.78 Aligned_cols=99 Identities=17% Similarity=0.279 Sum_probs=72.2
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCCCc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIPKA 245 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p~~ 245 (350)
..+++.++ ..++.+|||||||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +.+.|
T Consensus 32 ~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~ 107 (299)
T 2h1r_A 32 DKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF 107 (299)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred HHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence 44555555 567889999999999999999986 458999999 888877654 3589999999998 66789
Q ss_pred cEEEecchhccCChHHHHHHH---------------HHHHhhCCCCCc
Q 018775 246 DAVFMKWILHDWDDEACVKIL---------------KNCRQAIPDKSG 278 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L---------------~~~~~~L~~pgG 278 (350)
|+|+++ ..+++..+....++ ..+.++++ |+|
T Consensus 108 D~Vv~n-~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla-~~G 153 (299)
T 2h1r_A 108 DVCTAN-IPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLA-NVG 153 (299)
T ss_dssp SEEEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTC-CTT
T ss_pred CEEEEc-CCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhc-CCC
Confidence 999884 45556666666666 34667888 766
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-08 Score=89.09 Aligned_cols=104 Identities=13% Similarity=0.233 Sum_probs=72.4
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCCC-c
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIPK-A 245 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p~-~ 245 (350)
...+++.++ ..++.+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++. .
T Consensus 19 ~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~ 94 (244)
T 1qam_A 19 IDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ 94 (244)
T ss_dssp HHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred HHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCC
Confidence 345566665 5678899999999999999999986 68999999 888876654 3689999999998 6652 3
Q ss_pred cEEEecchhccCChHHHHHHH--------------HHHHhhCCCCCceEE
Q 018775 246 DAVFMKWILHDWDDEACVKIL--------------KNCRQAIPDKSGKLV 281 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L--------------~~~~~~L~~pgG~ll 281 (350)
+..+.++..++++.+-...++ ..+.++++ |+|++.
T Consensus 95 ~~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~-~~G~l~ 143 (244)
T 1qam_A 95 SYKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLN-TKRSLA 143 (244)
T ss_dssp CCEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTC-TTSHHH
T ss_pred CeEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhc-CCcchh
Confidence 334444544444333333333 23667777 777543
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.77 E-value=3.4e-09 Score=92.21 Aligned_cols=104 Identities=12% Similarity=0.228 Sum_probs=76.4
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCC---C
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIP---K 244 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p---~ 244 (350)
..+++.++ ..++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++ +
T Consensus 19 ~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 94 (245)
T 1yub_A 19 NQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCC
Confidence 44555665 6678899999999999999999985 78999999 888888876 3579999999998 654 2
Q ss_pred ccEEEecchhccCChHHHHHHH--------------HHHHhhCCCCCceEEEEe
Q 018775 245 ADAVFMKWILHDWDDEACVKIL--------------KNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L--------------~~~~~~L~~pgG~lli~e 284 (350)
| .|+ ++..++.+.+....++ +.+.++|+ |||++.+..
T Consensus 95 f-~vv-~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~-~~G~l~v~~ 145 (245)
T 1yub_A 95 Y-KIV-GNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLD-IHRTLGLLL 145 (245)
T ss_dssp E-EEE-EECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHC-GGGSHHHHT
T ss_pred c-EEE-EeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhC-CCCchhhhh
Confidence 6 443 3433333333333333 56899999 999987643
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.76 E-value=1e-07 Score=87.44 Aligned_cols=151 Identities=18% Similarity=0.273 Sum_probs=95.6
Q ss_pred CcceEEEecCCchHHHHHH--------HHHC-------CCCcEEEecchh-H-------hhhCCC--------------C
Q 018775 186 SIQSLADVGGGTGGALAEI--------VKSY-------PHIKGINFDLPH-V-------VATAPV--------------C 228 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l--------~~~~-------p~~~~~~~D~~~-~-------~~~a~~--------------~ 228 (350)
...+|+|+|||+|..+..+ .+++ |..++..-|+|. . +...++ .
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~ 131 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS 131 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence 3689999999999988776 2233 778888888853 1 122110 0
Q ss_pred CCeEEEeccCCC-CCCC--ccEEEecchhccCCh------------------------------------HHHHHHHHHH
Q 018775 229 EGIFHVGGDMFD-AIPK--ADAVFMKWILHDWDD------------------------------------EACVKILKNC 269 (350)
Q Consensus 229 ~~i~~~~~d~~~-~~p~--~D~i~~~~vlh~~~~------------------------------------~~~~~~L~~~ 269 (350)
--+.-+++.+.. .+|+ +|+|+++.+||-+++ .+...+|+..
T Consensus 132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 113346677777 5664 999999999997661 1445679999
Q ss_pred HhhCCCCCceEEEEeeeecCCCCCcccccchhh-hhh---H--hh-------------hcCCcccCCHHHHHHHHH-hcC
Q 018775 270 RQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVF-DLV---M--FA-------------HTTGGKERTEQEWMKLLE-QGG 329 (350)
Q Consensus 270 ~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~-~~~---~--~~-------------~~~~~~~~s~~e~~~ll~-~aG 329 (350)
++.|+ |||++++.-...++............+ +.. . +. ..+ -..++.+|++++++ +.|
T Consensus 212 a~eL~-pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P-~y~ps~~E~~~~l~~~~~ 289 (374)
T 3b5i_A 212 AAEVK-RGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIP-VYAPSLQDFKEVVDANGS 289 (374)
T ss_dssp HHHEE-EEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCC-BCCCCHHHHHHHHHHHCS
T ss_pred HHHhC-CCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCcc-ccCCCHHHHHHHHHhcCC
Confidence 99999 999999877655543211000000111 110 0 10 011 23358999999998 599
Q ss_pred CceeEEEEc
Q 018775 330 FHRCKIISM 338 (350)
Q Consensus 330 f~~~~~~~~ 338 (350)
|++.++...
T Consensus 290 F~I~~le~~ 298 (374)
T 3b5i_A 290 FAIDKLVVY 298 (374)
T ss_dssp EEEEEEEEE
T ss_pred cEEEEEEEE
Confidence 998776543
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2e-08 Score=94.65 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=80.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-C--CC--CccEEEe--
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-A--IP--KADAVFM-- 250 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~--~p--~~D~i~~-- 250 (350)
..++.+|||+|||+|..+..+++..++.+++++|. +..++.+++ ..+++++.+|+.+ + ++ .||+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 56788999999999999999999998889999998 777766543 3358899999987 3 33 4999996
Q ss_pred ----cchhccCChH-------HH-------HHHHHHHHhhCCCCCceEEEEeeee
Q 018775 251 ----KWILHDWDDE-------AC-------VKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 251 ----~~vlh~~~~~-------~~-------~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
..++++.++. +. ..+|+++.+.|+ |||+|++.....
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lk-pGG~lvystcs~ 377 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLK-TGGTLVYATCSV 377 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEE-EEEEEEEEESCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEECCC
Confidence 2455543331 11 488999999999 999999877544
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=5.2e-09 Score=98.75 Aligned_cols=102 Identities=12% Similarity=0.100 Sum_probs=78.0
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C--CC-CccEEEe-
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A--IP-KADAVFM- 250 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~p-~~D~i~~- 250 (350)
..++.+|||+|||+|..+..+++..++ .+++++|+ +.+++.+++ .. +.++.+|..+ + .+ .||+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 567899999999999999999998765 68999999 888877654 23 8999999876 3 23 4999996
Q ss_pred -----cchhc-------cCChHHH-------HHHHHHHHhhCCCCCceEEEEeeee
Q 018775 251 -----KWILH-------DWDDEAC-------VKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 251 -----~~vlh-------~~~~~~~-------~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
..+++ .|+.++. .++|+++.+.|+ |||+|+......
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk-pGG~LvysTCs~ 232 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLG-PGGVLVYSTCTF 232 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEE-EEEEEEEEESCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeccC
Confidence 12222 2333222 679999999999 999999766444
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.4e-08 Score=93.94 Aligned_cols=120 Identities=14% Similarity=0.077 Sum_probs=89.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC--CccEEEecch
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP--KADAVFMKWI 253 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p--~~D~i~~~~v 253 (350)
.++.+|||+|||+|.+++.++...+..+++++|+ +.+++.++. .++++++.+|+.+ +.+ .||+|+++-.
T Consensus 216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP 295 (373)
T 3tm4_A 216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP 295 (373)
T ss_dssp CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC
T ss_pred CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCC
Confidence 4678999999999999999999887778999999 888887765 2589999999998 544 4999999643
Q ss_pred hccCC-----hHH-HHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHh
Q 018775 254 LHDWD-----DEA-CVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQ 327 (350)
Q Consensus 254 lh~~~-----~~~-~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~ 327 (350)
.+... ..+ -..+++.++++|. |.++++. . +.+.+.+.+++
T Consensus 296 yg~r~~~~~~~~~ly~~~~~~l~r~l~---g~~~~i~-------------------------~------~~~~~~~~~~~ 341 (373)
T 3tm4_A 296 YGLKIGKKSMIPDLYMKFFNELAKVLE---KRGVFIT-------------------------T------EKKAIEEAIAE 341 (373)
T ss_dssp CC------CCHHHHHHHHHHHHHHHEE---EEEEEEE-------------------------S------CHHHHHHHHHH
T ss_pred CCcccCcchhHHHHHHHHHHHHHHHcC---CeEEEEE-------------------------C------CHHHHHHHHHH
Confidence 32211 111 2567788888775 3443321 1 25677788999
Q ss_pred cCCceeEEEEc
Q 018775 328 GGFHRCKIISM 338 (350)
Q Consensus 328 aGf~~~~~~~~ 338 (350)
.||+..+.+++
T Consensus 342 ~G~~~~~~~~~ 352 (373)
T 3tm4_A 342 NGFEIIHHRVI 352 (373)
T ss_dssp TTEEEEEEEEE
T ss_pred cCCEEEEEEEE
Confidence 99999888776
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.4e-08 Score=95.05 Aligned_cols=102 Identities=16% Similarity=0.223 Sum_probs=78.6
Q ss_pred CcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C--CC-CccEEEec--
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A--IP-KADAVFMK-- 251 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~p-~~D~i~~~-- 251 (350)
++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ ..+++++.+|..+ + .+ .||+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 788999999999999999999875 478999999 888776654 3579999999987 3 33 49999971
Q ss_pred ----chhc-------cCChHH-------HHHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 252 ----WILH-------DWDDEA-------CVKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 252 ----~vlh-------~~~~~~-------~~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
.+++ +|+.++ -.++|+++.++|+ |||+|++......
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk-pGG~LvysTcs~~ 250 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALR-PGGTLVYSTCTLN 250 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEESCCS
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcC-CCCEEEEecccCC
Confidence 2332 233322 2478999999999 9999998765443
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=5.2e-09 Score=97.17 Aligned_cols=98 Identities=11% Similarity=0.040 Sum_probs=73.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CC-CeEEEeccCCC--C-C----CCccEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CE-GIFHVGGDMFD--A-I----PKADAV 248 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~-~i~~~~~d~~~--~-~----p~~D~i 248 (350)
.++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ .+ +++++.+|+++ + . ..||+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 457899999999999999999863 237999999 888887764 22 89999999876 2 1 259999
Q ss_pred Eecchh-----ccCC--hHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 249 FMKWIL-----HDWD--DEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 249 ~~~~vl-----h~~~--~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
++.--. ++.. .+...++++.+.+.|+ |||.|++..
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~-pgG~l~~~~ 331 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILS-ENGLIIAST 331 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcC-CCcEEEEEe
Confidence 983211 1211 2234568889999999 999988754
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.6e-08 Score=95.35 Aligned_cols=103 Identities=11% Similarity=0.192 Sum_probs=76.9
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C--CC-CccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A--IP-KADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~p-~~D~i~~~ 251 (350)
..++.+|||+|||+|..+..+++..++ .+++++|+ +..++.+++ ..++.++.+|..+ + .+ .||+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 567889999999999999999987654 68999999 877776654 3569999999876 2 23 49999972
Q ss_pred ------chhcc-------CChHH-------HHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 252 ------WILHD-------WDDEA-------CVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 252 ------~vlh~-------~~~~~-------~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
.++.. |+.++ ...+|+++.+.|+ |||+|+......
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk-pGG~LvYsTCs~ 237 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLK-NKGQLIYSTCTF 237 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEE-EEEEEEEEESCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEEeec
Confidence 12222 21111 1378999999999 999998766544
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=8.5e-08 Score=85.30 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=65.0
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCCC--
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIPK-- 244 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p~-- 244 (350)
...+++.+. ..++.+|||||||+|.++..|++. ..+++++|+ +.+++.+++ ..+++++.+|+.+ +++.
T Consensus 39 ~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~ 114 (295)
T 3gru_A 39 VNKAVESAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLD 114 (295)
T ss_dssp HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSC
T ss_pred HHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCC
Confidence 345566666 667889999999999999999998 468999998 888887765 4789999999998 6664
Q ss_pred ccEEEecchhccCChH
Q 018775 245 ADAVFMKWILHDWDDE 260 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~ 260 (350)
||+|+++. -++++.+
T Consensus 115 fD~Iv~Nl-Py~is~p 129 (295)
T 3gru_A 115 FNKVVANL-PYQISSP 129 (295)
T ss_dssp CSEEEEEC-CGGGHHH
T ss_pred ccEEEEeC-cccccHH
Confidence 99998653 3344443
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.59 E-value=7.8e-08 Score=89.26 Aligned_cols=110 Identities=15% Similarity=0.072 Sum_probs=79.5
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCC--------------------------------------CcEE
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPH--------------------------------------IKGI 214 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 214 (350)
+..++.... +.++..|||.+||+|.+++..+....+ .+++
T Consensus 190 Aa~ll~l~~--~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 267 (393)
T 3k0b_A 190 AAALVLLTS--WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII 267 (393)
T ss_dssp HHHHHHHSC--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHhC--CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence 344555555 567889999999999999888765433 5699
Q ss_pred Eecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC-CccEEEec--chhccCChHHHHHHHHHHHhhCCCC--CceE
Q 018775 215 NFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP-KADAVFMK--WILHDWDDEACVKILKNCRQAIPDK--SGKL 280 (350)
Q Consensus 215 ~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p-~~D~i~~~--~vlh~~~~~~~~~~L~~~~~~L~~p--gG~l 280 (350)
++|+ +.+++.|+. .++|+++.+|+.+ +.+ .||+|+++ +....-..++...+.+.+.+.|+ + ||++
T Consensus 268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk-~~~g~~~ 346 (393)
T 3k0b_A 268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYK-RMPTWSV 346 (393)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHH-TCTTCEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHh-cCCCCEE
Confidence 9999 888887764 4579999999998 444 49999996 22221012455667777777776 5 8998
Q ss_pred EEEee
Q 018775 281 VLVEI 285 (350)
Q Consensus 281 li~e~ 285 (350)
+++..
T Consensus 347 ~iit~ 351 (393)
T 3k0b_A 347 YVLTS 351 (393)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 88653
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=4.1e-08 Score=89.46 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=74.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCCCccEEEecchhcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIPKADAVFMKWILHD 256 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p~~D~i~~~~vlh~ 256 (350)
.++.+|||+|||+|.++.. ++ ...+++++|+ +.+++.+++ .++++++.+|+.+....||+|++.--
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP--- 267 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLP--- 267 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCT---
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCc---
Confidence 4678999999999999999 76 4678999999 888887764 35899999999984356999998421
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
.....+++.+.++|+ |||.+++.+...
T Consensus 268 ---~~~~~~l~~~~~~L~-~gG~l~~~~~~~ 294 (336)
T 2yx1_A 268 ---KFAHKFIDKALDIVE-EGGVIHYYTIGK 294 (336)
T ss_dssp ---TTGGGGHHHHHHHEE-EEEEEEEEEEES
T ss_pred ---HhHHHHHHHHHHHcC-CCCEEEEEEeec
Confidence 112378999999999 999999876544
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.1e-08 Score=91.53 Aligned_cols=96 Identities=16% Similarity=0.034 Sum_probs=73.9
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------C-C-CeEEEeccCCCC-------CCCccEEE
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------C-E-GIFHVGGDMFDA-------IPKADAVF 249 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~-~i~~~~~d~~~~-------~p~~D~i~ 249 (350)
++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ . . +++++.+|+++. ...||+|+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 57899999999999999999864 458999999 888887764 2 3 799999999872 12599999
Q ss_pred ecchh--------ccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 250 MKWIL--------HDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 250 ~~~vl--------h~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+.--. +.. ......++.++.+.|+ |||.+++..
T Consensus 299 ~dpP~~~~~~~~~~~~-~~~~~~~l~~~~~~Lk-pgG~l~~~~ 339 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGA-CRGYKDINMLAIQLLN-EGGILLTFS 339 (396)
T ss_dssp ECCSSTTTCSSSSSCC-CTHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred ECCCCCCCChhHHHHH-HHHHHHHHHHHHHhcC-CCcEEEEEe
Confidence 85211 111 1345688999999999 999988754
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.4e-07 Score=85.64 Aligned_cols=110 Identities=12% Similarity=0.046 Sum_probs=81.2
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCC--------------------------------------CcEE
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPH--------------------------------------IKGI 214 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 214 (350)
+..++.... +.++..|||.+||+|.+++..+....+ .+++
T Consensus 183 Aaall~l~~--~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~ 260 (384)
T 3ldg_A 183 AAAIILLSN--WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS 260 (384)
T ss_dssp HHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHhC--CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence 344555555 567899999999999999988765433 5699
Q ss_pred Eecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC-CccEEEec--chhccCChHHHHHHHHHHHhhCCCC--CceE
Q 018775 215 NFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP-KADAVFMK--WILHDWDDEACVKILKNCRQAIPDK--SGKL 280 (350)
Q Consensus 215 ~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p-~~D~i~~~--~vlh~~~~~~~~~~L~~~~~~L~~p--gG~l 280 (350)
++|+ +.+++.|+. .++|+++.+|+.+ +.+ .||+|+++ +-...-..++...+.+++.+.|+ + |+++
T Consensus 261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk-~~~g~~~ 339 (384)
T 3ldg_A 261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFA-PLKTWSQ 339 (384)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHT-TCTTSEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHh-hCCCcEE
Confidence 9999 888887764 4579999999998 444 59999986 22221123566778888888887 5 8998
Q ss_pred EEEee
Q 018775 281 VLVEI 285 (350)
Q Consensus 281 li~e~ 285 (350)
.++..
T Consensus 340 ~iit~ 344 (384)
T 3ldg_A 340 FILTN 344 (384)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 87653
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.55 E-value=4.6e-08 Score=91.21 Aligned_cols=98 Identities=19% Similarity=0.101 Sum_probs=74.7
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-----CCCccEEEe
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-----IPKADAVFM 250 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-----~p~~D~i~~ 250 (350)
++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ .++++++.+|+++ + ...||+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 6789999999999999999986 3458999999 888887764 2289999999887 2 125999998
Q ss_pred cchhccCC-------hHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 251 KWILHDWD-------DEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 251 ~~vlh~~~-------~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
.--.+..+ ......+++++.+.|+ |||.+++...
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lv~~~~ 336 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVK-DGGILVTCSC 336 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEE-EEEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEEC
Confidence 42111111 1445688999999999 9999887653
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=5.7e-08 Score=90.09 Aligned_cols=96 Identities=14% Similarity=0.061 Sum_probs=73.9
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCC-------CCCccEEEec
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDA-------IPKADAVFMK 251 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~-------~p~~D~i~~~ 251 (350)
++.+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++.+|+++. ...||+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 6789999999999999999987 568999999 888887764 23499999999872 1259999983
Q ss_pred chhccCC-------hHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 252 WILHDWD-------DEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 252 ~vlh~~~-------~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
---...+ ......+++++.+.|+ |||.+++..
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~ 325 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLK-EGGILATAS 325 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEE
Confidence 2111111 1345678999999999 999998765
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.7e-07 Score=86.93 Aligned_cols=97 Identities=11% Similarity=0.053 Sum_probs=70.7
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCC---CC-CccEEEecchh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDA---IP-KADAVFMKWIL 254 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~---~p-~~D~i~~~~vl 254 (350)
.++.+|||+|||+|.++..+++.. .+++++|+ +.+++.+++ .-..++..+|+++. .+ .||+|++.--.
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred cCCCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence 358899999999999999999874 44999999 888887764 22235678898872 22 39999984221
Q ss_pred ccCC-------hHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 255 HDWD-------DEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 255 h~~~-------~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
..-+ ......+++++.++|+ |||.|++..
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~Lk-pGG~Lv~~s 326 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLA-EEGFLWLSS 326 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEE
Confidence 1111 1233578999999999 999998655
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.52 E-value=5.9e-08 Score=91.85 Aligned_cols=108 Identities=18% Similarity=0.151 Sum_probs=79.2
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-------------CCCcEEEecc-hhHhhhCCC------C--CCe
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-------------PHIKGINFDL-PHVVATAPV------C--EGI 231 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~------~--~~i 231 (350)
..+++.+. ...+.+|+|.|||+|.++..+++.. +..+++++|+ +.+++.|+. . .++
T Consensus 161 ~~mv~~l~--~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~ 238 (445)
T 2okc_A 161 QAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 238 (445)
T ss_dssp HHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHhC--CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCC
Confidence 34444444 4567799999999999999888753 4568999999 888776643 1 167
Q ss_pred EEEeccCCC-CCC-CccEEEecchhccCChH---------------HHHHHHHHHHhhCCCCCceEEEEe
Q 018775 232 FHVGGDMFD-AIP-KADAVFMKWILHDWDDE---------------ACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 232 ~~~~~d~~~-~~p-~~D~i~~~~vlh~~~~~---------------~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
.+.++|.+. +.. .||+|+++--++..... .-..+++++.+.|+ |||++.++-
T Consensus 239 ~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk-~gG~~a~V~ 307 (445)
T 2okc_A 239 PIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLK-TGGRAAVVL 307 (445)
T ss_dssp SEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred CEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhc-cCCEEEEEE
Confidence 899999998 433 59999997544432111 12478999999999 999998765
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.1e-07 Score=79.86 Aligned_cols=90 Identities=14% Similarity=0.173 Sum_probs=66.7
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--CCCeEEEeccCCC-CCCC-c-cE
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--CEGIFHVGGDMFD-AIPK-A-DA 247 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~~p~-~-D~ 247 (350)
..+++.++ ..++.+|||||||+|.++..+++. +..+++++|+ +.+++.+++ ..+++++.+|+.+ +++. + +.
T Consensus 21 ~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 97 (249)
T 3ftd_A 21 KKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL 97 (249)
T ss_dssp HHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE
T ss_pred HHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc
Confidence 45566666 567889999999999999999987 4578999999 888887765 3579999999998 6654 2 45
Q ss_pred EEecchhccCChHHHHHHH
Q 018775 248 VFMKWILHDWDDEACVKIL 266 (350)
Q Consensus 248 i~~~~vlh~~~~~~~~~~L 266 (350)
++..+.-++.+.+-..++|
T Consensus 98 ~vv~NlPy~i~~~il~~ll 116 (249)
T 3ftd_A 98 KVVGNLPYNVASLIIENTV 116 (249)
T ss_dssp EEEEECCTTTHHHHHHHHH
T ss_pred EEEEECchhccHHHHHHHH
Confidence 6666666665544333333
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-07 Score=87.40 Aligned_cols=110 Identities=16% Similarity=0.095 Sum_probs=80.6
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCC--------------------------------------CcEE
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPH--------------------------------------IKGI 214 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 214 (350)
+..++.... +.++.+|||.+||+|.+++..+....+ .+++
T Consensus 184 Aa~ll~~~~--~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 261 (385)
T 3ldu_A 184 AAGLIYLTP--WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIY 261 (385)
T ss_dssp HHHHHHTSC--CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEE
T ss_pred HHHHHHhhC--CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEE
Confidence 344555555 567899999999999999998775322 5799
Q ss_pred Eecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC-CccEEEecchhc-cCC-hHHHHHHHHHHHhhCCCC--CceE
Q 018775 215 NFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP-KADAVFMKWILH-DWD-DEACVKILKNCRQAIPDK--SGKL 280 (350)
Q Consensus 215 ~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh-~~~-~~~~~~~L~~~~~~L~~p--gG~l 280 (350)
++|+ +.+++.|+. .++|++.++|+.+ +.+ .||+|+++--.. .+. .++...+.+++.+.|+ + |+++
T Consensus 262 GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk-~~~g~~~ 340 (385)
T 3ldu_A 262 GYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFR-KLKNWSY 340 (385)
T ss_dssp EEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHH-TSBSCEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHh-hCCCCEE
Confidence 9999 899988765 3479999999998 444 499999953221 112 3456677887877777 5 8888
Q ss_pred EEEee
Q 018775 281 VLVEI 285 (350)
Q Consensus 281 li~e~ 285 (350)
.++..
T Consensus 341 ~iit~ 345 (385)
T 3ldu_A 341 YLITS 345 (385)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 87653
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.1e-07 Score=92.53 Aligned_cols=128 Identities=16% Similarity=0.202 Sum_probs=85.5
Q ss_pred ChhhhhccCcchHHHHHHHHhhhhhhhHHHHHHhccc--CCCCcceEEEecCCchHHHHHHHH---HC-CCCcEEEecch
Q 018775 146 EIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKD--GFDSIQSLADVGGGTGGALAEIVK---SY-PHIKGINFDLP 219 (350)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~--~~~~~~~vLDvG~G~G~~~~~l~~---~~-p~~~~~~~D~~ 219 (350)
..|+.+++|+-.-..|.+++... +.+.... ...+...|+|||||+|-++...++ +. ..+++..++-.
T Consensus 322 ~tYevFEkD~vKy~~Ye~AI~~A-------l~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEkn 394 (637)
T 4gqb_A 322 QTYEVFEKDPIKYSQYQQAIYKC-------LLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKN 394 (637)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-------HHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESC
T ss_pred hhhhhhcCChhhHHHHHHHHHHH-------HHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 34677888887766677665432 2222210 023457899999999988544333 32 23467888874
Q ss_pred hHhhhCCC-------CCCeEEEeccCCC-CCCC-ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEE
Q 018775 220 HVVATAPV-------CEGIFHVGGDMFD-AIPK-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLV 281 (350)
Q Consensus 220 ~~~~~a~~-------~~~i~~~~~d~~~-~~p~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~ll 281 (350)
++...+++ .++|+++.+|+++ ..|. +|+|++.++=+..-.+-...+|....+.|| |||.++
T Consensus 395 p~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LK-PgGimi 464 (637)
T 4gqb_A 395 PNAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLK-DDGVSI 464 (637)
T ss_dssp HHHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEE-EEEEEE
T ss_pred HHHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcC-CCcEEc
Confidence 44444432 7899999999999 7775 999998665444434445577888889999 999875
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=4e-07 Score=80.00 Aligned_cols=89 Identities=10% Similarity=0.035 Sum_probs=66.8
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---CCCeEEEeccCCC-CCC---Cc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---CEGIFHVGGDMFD-AIP---KA 245 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~i~~~~~d~~~-~~p---~~ 245 (350)
..+++.+. ..++ +|||||||+|.++..|++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++ .+
T Consensus 37 ~~Iv~~~~--~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~ 111 (271)
T 3fut_A 37 RRIVEAAR--PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG 111 (271)
T ss_dssp HHHHHHHC--CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred HHHHHhcC--CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence 44555555 5667 99999999999999999975 57899998 888877654 4689999999998 655 36
Q ss_pred cEEEecchhccCChHHHHHHHHH
Q 018775 246 DAVFMKWILHDWDDEACVKILKN 268 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~ 268 (350)
|.|+ ++..++++.+-..++|..
T Consensus 112 ~~iv-~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 112 SLLV-ANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EEEE-EEECSSCCHHHHHHHHHH
T ss_pred cEEE-ecCcccccHHHHHHHhcC
Confidence 6655 455666676655555554
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-06 Score=79.66 Aligned_cols=149 Identities=17% Similarity=0.198 Sum_probs=92.0
Q ss_pred cceEEEecCCchHHHHHHHHH-----------------CCCCcEEEecchh------------HhhhC-----CCCCC--
Q 018775 187 IQSLADVGGGTGGALAEIVKS-----------------YPHIKGINFDLPH------------VVATA-----PVCEG-- 230 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~~------------~~~~a-----~~~~~-- 230 (350)
..+|+|+||++|..+..++.. .|.++++.-|+|. ..+.+ .....
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 789999999999998887765 4677888888861 11111 11112
Q ss_pred eEEEeccCCC-CCCC--ccEEEecchhccCChHH-------------------------H------------HHHHHHHH
Q 018775 231 IFHVGGDMFD-AIPK--ADAVFMKWILHDWDDEA-------------------------C------------VKILKNCR 270 (350)
Q Consensus 231 i~~~~~d~~~-~~p~--~D~i~~~~vlh~~~~~~-------------------------~------------~~~L~~~~ 270 (350)
+.-++|.|.. .+|+ +|+|+++.+||-+++.. + ..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234566766 5664 99999999999654221 1 22377779
Q ss_pred hhCCCCCceEEEEeeeecCC--CCCcc-cccchhhhhhHhhh--------c--CCcccCCHHHHHHHHHhcC-CceeEEE
Q 018775 271 QAIPDKSGKLVLVEIVVQED--GNNIF-GDMGLVFDLVMFAH--------T--TGGKERTEQEWMKLLEQGG-FHRCKII 336 (350)
Q Consensus 271 ~~L~~pgG~lli~e~~~~~~--~~~~~-~~~~~~~~~~~~~~--------~--~~~~~~s~~e~~~ll~~aG-f~~~~~~ 336 (350)
+.|+ |||++++.-...++. ..... .....+.++..... + + -..++.+|+++++++.| |++.++.
T Consensus 213 ~eL~-pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P-~y~ps~~E~~~~le~~g~F~i~~le 290 (384)
T 2efj_A 213 EELI-SRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVP-IYAPSTEEVKRIVEEEGSFEILYLE 290 (384)
T ss_dssp HHEE-EEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCS-BCCCCHHHHHHHHHHHCSEEEEEEE
T ss_pred HHhc-cCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCc-ccCCCHHHHHHHHHHcCCceEEEEE
Confidence 9999 999999876665553 21100 00112222211111 1 2 23458999999999985 7777654
Q ss_pred E
Q 018775 337 S 337 (350)
Q Consensus 337 ~ 337 (350)
.
T Consensus 291 ~ 291 (384)
T 2efj_A 291 T 291 (384)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=5e-07 Score=85.12 Aligned_cols=97 Identities=7% Similarity=0.114 Sum_probs=70.0
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC-----
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI----- 242 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~----- 242 (350)
.+++.++ ..++.+|||+|||+|.++..+++. ..+++++|. +.+++.|++ ..+++|+.+|+.+..
T Consensus 277 ~~~~~l~--~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~ 352 (433)
T 1uwv_A 277 RALEWLD--VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 (433)
T ss_dssp HHHHHHT--CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHhhc--CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhh
Confidence 3444444 556789999999999999999987 568999999 888887764 247999999998732
Q ss_pred C--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 243 P--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 243 p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
+ .||+|++. -|...+..+++.+.+ ++ |++.+++
T Consensus 353 ~~~~fD~Vv~d-----PPr~g~~~~~~~l~~-~~-p~~ivyv 387 (433)
T 1uwv_A 353 AKNGFDKVLLD-----PARAGAAGVMQQIIK-LE-PIRIVYV 387 (433)
T ss_dssp GTTCCSEEEEC-----CCTTCCHHHHHHHHH-HC-CSEEEEE
T ss_pred hcCCCCEEEEC-----CCCccHHHHHHHHHh-cC-CCeEEEE
Confidence 1 49999983 222212345665554 57 8776665
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.40 E-value=5.4e-06 Score=75.40 Aligned_cols=149 Identities=17% Similarity=0.175 Sum_probs=92.0
Q ss_pred CCcceEEEecCCchHHHHHHHHH----------------CCCCcEEEecch-hHhh----hCCC---CCC---eEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKS----------------YPHIKGINFDLP-HVVA----TAPV---CEG---IFHVGGD 237 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~----------------~p~~~~~~~D~~-~~~~----~a~~---~~~---i~~~~~d 237 (350)
+...+|+|+||++|..+..+... .|..+++.-|+| .... .... ..+ +.-+++.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 45689999999999776554332 466788888885 2222 2111 112 2335677
Q ss_pred CCC-CCCC--ccEEEecchhccCCh-------------------------------HHHHHHHHHHHhhCCCCCceEEEE
Q 018775 238 MFD-AIPK--ADAVFMKWILHDWDD-------------------------------EACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 238 ~~~-~~p~--~D~i~~~~vlh~~~~-------------------------------~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
|.. .+|+ +|+++++..||-+++ ++...+|+..++.|+ |||++++.
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~-pGG~mvl~ 208 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVV-PGGRMVLT 208 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBC-TTCEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceEEEE
Confidence 777 5664 999999999996543 133456999999999 99999987
Q ss_pred eeeecCCCCCcc--cc-c----chhhhhhHhhh----------cCCcccCCHHHHHHHHHhcCC-ceeEE
Q 018775 284 EIVVQEDGNNIF--GD-M----GLVFDLVMFAH----------TTGGKERTEQEWMKLLEQGGF-HRCKI 335 (350)
Q Consensus 284 e~~~~~~~~~~~--~~-~----~~~~~~~~~~~----------~~~~~~~s~~e~~~ll~~aGf-~~~~~ 335 (350)
-...++...... .. . ..+.++..... .+ -..++.+|+++++++.|. ++.+.
T Consensus 209 ~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P-~y~ps~~E~~~~ie~~G~F~i~~~ 277 (359)
T 1m6e_X 209 ILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIP-QYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCC-CBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred EecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCC-ccCCCHHHHHHHHHHcCCceEEEE
Confidence 766655421100 00 0 01111111111 11 234589999999999965 66554
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.7e-07 Score=82.32 Aligned_cols=77 Identities=18% Similarity=0.302 Sum_probs=62.7
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-C--C-
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-A--I- 242 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~--~- 242 (350)
...+++.+. ..++.+|||+|||+|..+..+++.+|+.+++++|. +.+++.+++ ..+++++++|+.+ + .
T Consensus 15 l~e~l~~L~--~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~ 92 (301)
T 1m6y_A 15 VREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK 92 (301)
T ss_dssp HHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred HHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHH
Confidence 345555565 56788999999999999999999998889999999 888887764 2689999999876 3 1
Q ss_pred ----CCccEEEec
Q 018775 243 ----PKADAVFMK 251 (350)
Q Consensus 243 ----p~~D~i~~~ 251 (350)
..||.|++.
T Consensus 93 ~~g~~~~D~Vl~D 105 (301)
T 1m6y_A 93 TLGIEKVDGILMD 105 (301)
T ss_dssp HTTCSCEEEEEEE
T ss_pred hcCCCCCCEEEEc
Confidence 359999874
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.38 E-value=2.7e-07 Score=80.34 Aligned_cols=90 Identities=11% Similarity=0.066 Sum_probs=62.9
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCCC-c
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIPK-A 245 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p~-~ 245 (350)
...+++.+. ..++.+|||||||+|.++. +. +.+..+++++|+ +.+++.+++ ..+++++.+|+.+ +++. +
T Consensus 10 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~ 85 (252)
T 1qyr_A 10 IDSIVSAIN--PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELA 85 (252)
T ss_dssp HHHHHHHHC--CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHH
T ss_pred HHHHHHhcC--CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhh
Confidence 345556665 6678899999999999999 64 444444999999 888887765 2489999999998 5543 2
Q ss_pred -----cEEEecchhccCChHHHHHHH
Q 018775 246 -----DAVFMKWILHDWDDEACVKIL 266 (350)
Q Consensus 246 -----D~i~~~~vlh~~~~~~~~~~L 266 (350)
+.++.++.-++.+.+-..+++
T Consensus 86 ~~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 86 EKMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred cccCCceEEEECCCCCccHHHHHHHH
Confidence 355556666665544433444
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=3.6e-07 Score=90.99 Aligned_cols=97 Identities=11% Similarity=0.130 Sum_probs=73.4
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------C-CCeEEEeccCCC--C-C-CCccEEEecc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------C-EGIFHVGGDMFD--A-I-PKADAVFMKW 252 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-~~i~~~~~d~~~--~-~-p~~D~i~~~~ 252 (350)
++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ . ++++++++|+++ + . ..||+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 57899999999999999988853 246999999 888887764 2 489999999987 2 2 2499999842
Q ss_pred hh--------ccCC-hHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 253 IL--------HDWD-DEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 253 vl--------h~~~-~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
-- +.+. ......+++++.++|+ |||.|++..
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lk-pgG~L~~s~ 657 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLR-AGGTIMFSN 657 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcC-CCcEEEEEE
Confidence 11 0111 2345688999999999 999998543
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.35 E-value=3.2e-07 Score=79.95 Aligned_cols=67 Identities=15% Similarity=0.196 Sum_probs=54.7
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIP 243 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p 243 (350)
...+++.++ ..++.+|||||||+|.++..|+++. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++
T Consensus 18 ~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 18 LQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred HHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence 345566666 6778899999999999999999874 68999998 888887764 4789999999998 553
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.8e-07 Score=82.60 Aligned_cols=69 Identities=13% Similarity=0.194 Sum_probs=55.4
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCC--CcEEEecc-hhHhhhCCC--CCCeEEEeccCCC-CCCC
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPH--IKGINFDL-PHVVATAPV--CEGIFHVGGDMFD-AIPK 244 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~~p~ 244 (350)
..+++.+. ..++.+|||||||+|.++..|+++.+. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++.
T Consensus 32 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~ 106 (279)
T 3uzu_A 32 DAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS 106 (279)
T ss_dssp HHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred HHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence 34555555 667889999999999999999998653 45999999 888887765 3689999999998 6654
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=7.5e-07 Score=83.48 Aligned_cols=90 Identities=11% Similarity=-0.007 Sum_probs=67.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC-CccEEEecchhcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP-KADAVFMKWILHD 256 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p-~~D~i~~~~vlh~ 256 (350)
.++.+|||+|||+|.++..+++. ..+++++|. +.+++.|++ .. ++++.+|+.+..+ .||+|++.---..
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAG 365 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTC
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccc
Confidence 35789999999999999999986 458999999 888888764 23 9999999998433 6999998432111
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
.. ..+++.+. .|+ |+|.+++.
T Consensus 366 ~~----~~~~~~l~-~l~-p~givyvs 386 (425)
T 2jjq_A 366 LH----PRLVKRLN-REK-PGVIVYVS 386 (425)
T ss_dssp SC----HHHHHHHH-HHC-CSEEEEEE
T ss_pred hH----HHHHHHHH-hcC-CCcEEEEE
Confidence 11 13455554 479 99988874
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.34 E-value=7.9e-07 Score=78.46 Aligned_cols=98 Identities=14% Similarity=0.160 Sum_probs=75.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----------CCCeEEEeccCCCCC----CCccE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----------CEGIFHVGGDMFDAI----PKADA 247 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~~~----p~~D~ 247 (350)
.+.+.+||=||+|.|.++..+++..+..+++.+|+ +.+++.+++ ..|++++.+|..+-. ..||+
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv 160 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence 35678999999999999999999777778999999 888886653 579999999999822 24999
Q ss_pred EEecchhccCChH---HHHHHHHHHHhhCCCCCceEEEE
Q 018775 248 VFMKWILHDWDDE---ACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 248 i~~~~vlh~~~~~---~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
|+.-..= ..... -...+++.++++|+ |||.++..
T Consensus 161 Ii~D~~d-p~~~~~~L~t~eFy~~~~~~L~-p~Gv~v~q 197 (294)
T 3o4f_A 161 IISDCTD-PIGPGESLFTSAFYEGCKRCLN-PGGIFVAQ 197 (294)
T ss_dssp EEESCCC-CCCTTCCSSCCHHHHHHHHTEE-EEEEEEEE
T ss_pred EEEeCCC-cCCCchhhcCHHHHHHHHHHhC-CCCEEEEe
Confidence 9973211 01111 12468999999999 99998864
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.33 E-value=5.3e-07 Score=87.73 Aligned_cols=127 Identities=14% Similarity=0.110 Sum_probs=84.4
Q ss_pred ChhhhhccCcchHHHHHHHHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHH----C---------CCCc
Q 018775 146 EIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS----Y---------PHIK 212 (350)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~----~---------p~~~ 212 (350)
..|+.+.+|+.+-..|.+++.... .+.++ ...+...|||||||+|-++...+++ . ...+
T Consensus 377 ~tYe~fekD~vRy~~Y~~AI~~al-------~d~~~-~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~k 448 (745)
T 3ua3_A 377 GVYNTFEQDQIKYDVYGEAVVGAL-------KDLGA-DGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVK 448 (745)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH-------HHHHT-TCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEE
T ss_pred HHHHHHcCChhhHHHHHHHHHHHH-------HHhhc-ccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccE
Confidence 335667777777667776664421 12121 0134678999999999997533222 1 2347
Q ss_pred EEEecc-hhHhhhCCC------CCCeEEEeccCCC-CC------C-CccEEEecchhccCChHHHHHHHHHHHhhCCCCC
Q 018775 213 GINFDL-PHVVATAPV------CEGIFHVGGDMFD-AI------P-KADAVFMKWILHDWDDEACVKILKNCRQAIPDKS 277 (350)
Q Consensus 213 ~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~------p-~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pg 277 (350)
+++++- +.++..++. .++|+++.+|+.+ .. | .+|+|++...-+....+-..++|..+.+.|+ ||
T Consensus 449 VyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lk-p~ 527 (745)
T 3ua3_A 449 LYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLK-PT 527 (745)
T ss_dssp EEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSC-TT
T ss_pred EEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCC-CC
Confidence 888887 544332221 6889999999998 54 4 4999999776554444445678888899999 99
Q ss_pred ceEE
Q 018775 278 GKLV 281 (350)
Q Consensus 278 G~ll 281 (350)
|.++
T Consensus 528 Gi~i 531 (745)
T 3ua3_A 528 TISI 531 (745)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 9765
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.7e-06 Score=74.95 Aligned_cols=105 Identities=11% Similarity=0.021 Sum_probs=65.6
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCC--Ccc
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIP--KAD 246 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p--~~D 246 (350)
++.+... +.+..+|||+|||.|.++..+++..+...++++|+ -........ ...+.....++.. .++ .+|
T Consensus 65 ei~ek~~--l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~D 142 (277)
T 3evf_A 65 WFHERGY--VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCD 142 (277)
T ss_dssp HHHHTTS--SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCS
T ss_pred HHHHhCC--CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCcc
Confidence 4444433 67788999999999999998887655445555555 222111111 1133444454332 333 499
Q ss_pred EEEecchhc---cCChH-HHHHHHHHHHhhCCCCC-ceEEE
Q 018775 247 AVFMKWILH---DWDDE-ACVKILKNCRQAIPDKS-GKLVL 282 (350)
Q Consensus 247 ~i~~~~vlh---~~~~~-~~~~~L~~~~~~L~~pg-G~lli 282 (350)
+|++....+ ++-|. ....+|+.+.++|+ || |.+++
T Consensus 143 lVlsD~apnsG~~~~D~~rs~~LL~~a~~~Lk-pG~G~FV~ 182 (277)
T 3evf_A 143 TLLCDIGESSSSSVTEGERTVRVLDTVEKWLA-CGVDNFCV 182 (277)
T ss_dssp EEEECCCCCCSCHHHHHHHHHHHHHHHHHHHT-TCCSEEEE
T ss_pred EEEecCccCcCchHHHHHHHHHHHHHHHHHhC-CCCCeEEE
Confidence 999976554 12122 23356899999999 99 99887
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.1e-06 Score=76.66 Aligned_cols=132 Identities=18% Similarity=0.178 Sum_probs=86.1
Q ss_pred CCcceEEEecCCchHHHHHHHHH-------CCC-----CcEEEecc-h---hHhhhC-----------C-----------
Q 018775 185 DSIQSLADVGGGTGGALAEIVKS-------YPH-----IKGINFDL-P---HVVATA-----------P----------- 226 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~~~~a-----------~----------- 226 (350)
.+..+|||||+|+|..+..+++. .|+ ++++.++. | +.+..+ +
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 35689999999999998887654 674 57888886 5 222211 0
Q ss_pred ---------CCCCeEEEeccCCC--C-CC-----CccEEEec-chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 227 ---------VCEGIFHVGGDMFD--A-IP-----KADAVFMK-WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 227 ---------~~~~i~~~~~d~~~--~-~p-----~~D~i~~~-~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
...+++++.+|..+ + .+ .||+|++- +.....|+--...+|+.+++.|+ |||+|+...
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~-pGG~l~tys---- 213 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLAR-PGGTLATFT---- 213 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEE-EEEEEEESC----
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcC-CCcEEEEEe----
Confidence 02467789999876 2 22 49999983 22211111112478999999999 999987411
Q ss_pred CCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 289 EDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
. ...+++.|.++||.+.++.-.+.-..++.++|
T Consensus 214 ----------------------a------a~~vrr~L~~aGF~v~~~~g~~~kr~m~~a~~ 246 (257)
T 2qy6_A 214 ----------------------S------AGFVRRGLQEAGFTMQKRKGFGRKREMLCGVM 246 (257)
T ss_dssp ----------------------C------BHHHHHHHHHHTEEEEEECCSTTCCCEEEEEE
T ss_pred ----------------------C------CHHHHHHHHHCCCEEEeCCCCCCCCceEEEEe
Confidence 0 12456778899999776554555556777665
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1.7e-05 Score=71.72 Aligned_cols=142 Identities=9% Similarity=0.136 Sum_probs=104.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC---------------------------CCCeEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV---------------------------CEGIFHVGGD 237 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------------------------~~~i~~~~~d 237 (350)
.+...|+.+|||......+|...+++++++-+|.|++++.-++ .++..++..|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 4578999999999999999999888999999999887664321 2689999999
Q ss_pred CCC-CC----------CC-ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh
Q 018775 238 MFD-AI----------PK-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV 305 (350)
Q Consensus 238 ~~~-~~----------p~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~ 305 (350)
+.+ +. ++ ..++++..+|++++.+++.++|+.+.+.++ +|.+++.|.+.+.....+ +...+-..
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~~--~~~~v~~e~i~~~~~~~~---fg~~m~~~ 250 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS--HGLWISYDPIGGSQPNDR---FGAIMQSN 250 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS--SEEEEEEEECCCCSTTCC---HHHHHHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhCC--CcEEEEEeccCCCCCcch---HHHHHHHH
Confidence 987 22 12 678999999999999999999999999865 678888998877332222 11111111
Q ss_pred Hhh-h---cCC-cccCCHHHHHHHHHhcCCc
Q 018775 306 MFA-H---TTG-GKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 306 ~~~-~---~~~-~~~~s~~e~~~ll~~aGf~ 331 (350)
+.. . ..+ ....+.++..+.|.++||+
T Consensus 251 l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 251 LKESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred hhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 110 0 110 1234889999999999997
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.16 E-value=6.6e-07 Score=82.48 Aligned_cols=87 Identities=8% Similarity=0.149 Sum_probs=64.6
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCC---C--------------
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDA---I-------------- 242 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~---~-------------- 242 (350)
+.+|||+|||+|.++..+++.. .+++++|. +.+++.+++ .++++++.+|..+. .
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 4689999999999999988753 47999999 888887764 35799999998761 1
Q ss_pred --CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 243 --PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 243 --p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
..||+|++. -|. ..+.+++.+.|+ |+|+++.+.
T Consensus 292 ~~~~fD~Vv~d-----PPr---~g~~~~~~~~l~-~~g~ivyvs 326 (369)
T 3bt7_A 292 KSYQCETIFVD-----PPR---SGLDSETEKMVQ-AYPRILYIS 326 (369)
T ss_dssp GGCCEEEEEEC-----CCT---TCCCHHHHHHHT-TSSEEEEEE
T ss_pred ccCCCCEEEEC-----cCc---cccHHHHHHHHh-CCCEEEEEE
Confidence 158999862 111 134456677778 888888654
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.6e-06 Score=74.36 Aligned_cols=97 Identities=16% Similarity=0.205 Sum_probs=68.1
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-h-------hHhhhCCC-------CCCeEEEeccCCC--C-C---
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-P-------HVVATAPV-------CEGIFHVGGDMFD--A-I--- 242 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~-------~~~i~~~~~d~~~--~-~--- 242 (350)
..++.+|||+|||+|..+..+++. ..+++++|+ + .+++.++. .++++++.+|..+ + +
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 345689999999999999999986 568999999 8 77776653 3579999999886 2 3
Q ss_pred -CCccEEEecchhccCC------------------hHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 243 -PKADAVFMKWILHDWD------------------DEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 243 -p~~D~i~~~~vlh~~~------------------~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
..||+|++.-.+++-. +.+...+++.+.++.+ .+++|-.+
T Consensus 159 ~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~---~~vvvk~p 217 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAK---KRVVVKRP 217 (258)
T ss_dssp HCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCS---SEEEEEEE
T ss_pred CCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcC---cEEEEEcC
Confidence 3599999965444321 1234456667777765 35555443
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.1e-06 Score=73.38 Aligned_cols=106 Identities=13% Similarity=0.136 Sum_probs=69.3
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCC-eEEEec-cCCC-CCCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEG-IFHVGG-DMFD-AIPK 244 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~-i~~~~~-d~~~-~~p~ 244 (350)
..++.+.+. +.+..+|||+|||.|.++...++..+-..++++|+ ......+.. ..+ +.+... |+.. +...
T Consensus 79 L~ei~eK~~--Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~ 156 (282)
T 3gcz_A 79 LRWMEERGY--VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIP 156 (282)
T ss_dssp HHHHHHTTS--CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCC
T ss_pred HHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCC
Confidence 345666665 77888999999999999999887766666777777 333222221 122 333332 4433 2235
Q ss_pred ccEEEecchhccCC----h-HHHHHHHHHHHhhCCCCC--ceEEE
Q 018775 245 ADAVFMKWILHDWD----D-EACVKILKNCRQAIPDKS--GKLVL 282 (350)
Q Consensus 245 ~D~i~~~~vlh~~~----~-~~~~~~L~~~~~~L~~pg--G~lli 282 (350)
+|+|++-...+ -+ | .....+|+-+.++|+ || |.+++
T Consensus 157 ~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk-~g~~G~Fv~ 199 (282)
T 3gcz_A 157 GDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQ-EGNYTEFCI 199 (282)
T ss_dssp CSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHH-HHCCCEEEE
T ss_pred cCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcC-CCCCCcEEE
Confidence 99999965554 22 2 223357888899999 99 99887
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=7.2e-06 Score=81.66 Aligned_cols=110 Identities=17% Similarity=0.030 Sum_probs=75.3
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHH------------------------------------------CCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS------------------------------------------YPH 210 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~------------------------------------------~p~ 210 (350)
+..++.... +.++..|||.+||+|.+++..+.. .+.
T Consensus 179 Aa~ll~~~~--~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~ 256 (703)
T 3v97_A 179 AAAIVMRSG--WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS 256 (703)
T ss_dssp HHHHHHHTT--CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhhC--CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence 344455555 567789999999999999887754 133
Q ss_pred CcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC----CccEEEec--chhccCChHHHHHHHHHHHh---h
Q 018775 211 IKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP----KADAVFMK--WILHDWDDEACVKILKNCRQ---A 272 (350)
Q Consensus 211 ~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p----~~D~i~~~--~vlh~~~~~~~~~~L~~~~~---~ 272 (350)
.+++++|+ +.+++.|+. .+.|++..+|+.+ ..| .||+|+++ +-...-..++...+.+.+.+ .
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~ 336 (703)
T 3v97_A 257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKN 336 (703)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHh
Confidence 68999999 889887764 4569999999987 222 59999996 21111113344455554444 4
Q ss_pred CCCCCceEEEEee
Q 018775 273 IPDKSGKLVLVEI 285 (350)
Q Consensus 273 L~~pgG~lli~e~ 285 (350)
+. |||+++++..
T Consensus 337 ~~-~g~~~~ilt~ 348 (703)
T 3v97_A 337 QF-GGWNLSLFSA 348 (703)
T ss_dssp HC-TTCEEEEEES
T ss_pred hC-CCCeEEEEeC
Confidence 45 7999998754
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=3.1e-06 Score=78.01 Aligned_cols=92 Identities=11% Similarity=-0.027 Sum_probs=71.1
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----C-----------------CCeEEEeccCCCC--
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----C-----------------EGIFHVGGDMFDA-- 241 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-----------------~~i~~~~~d~~~~-- 241 (350)
++.+|||+|||+|..++.++++.+..+++++|+ +.+++.+++ . .+++++.+|..+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 367999999999999999999988888999999 877765543 1 2388999998762
Q ss_pred -CC-CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 242 -IP-KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 242 -~p-~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
.+ .||+|++.- .. ....++..+.+.++ |||.+++..
T Consensus 127 ~~~~~fD~I~lDP-~~-----~~~~~l~~a~~~lk-~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-FG-----SPMEFLDTALRSAK-RRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-SS-----CCHHHHHHHHHHEE-EEEEEEEEE
T ss_pred hccCCCCEEEeCC-CC-----CHHHHHHHHHHhcC-CCCEEEEEe
Confidence 22 499999632 11 12478999999999 999877754
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.94 E-value=1e-05 Score=78.13 Aligned_cols=107 Identities=20% Similarity=0.208 Sum_probs=75.1
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCC------------------CCcEEEecc-hhHhhhCCC------CC
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYP------------------HIKGINFDL-PHVVATAPV------CE 229 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~------~~ 229 (350)
.+++.+. ..++.+|+|.+||+|.++..+.+... ..+++++|+ +.+++.|+. ..
T Consensus 160 ~mv~~l~--p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~ 237 (541)
T 2ar0_A 160 TIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 237 (541)
T ss_dssp HHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHhc--cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 3444444 45678999999999999988776431 247899999 877776542 22
Q ss_pred -----CeEEEeccCCC-C---CCCccEEEecchhccCC------------hHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 230 -----GIFHVGGDMFD-A---IPKADAVFMKWILHDWD------------DEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 230 -----~i~~~~~d~~~-~---~p~~D~i~~~~vlh~~~------------~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
++.+.++|.+. + .+.||+|+++--+.... .+.-..++.++.+.|+ |||++.++-
T Consensus 238 ~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk-~gGr~a~V~ 312 (541)
T 2ar0_A 238 GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLH-PGGRAAVVV 312 (541)
T ss_dssp CBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred ccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhC-CCCEEEEEe
Confidence 27889999987 3 23599999963322211 1112478999999999 999998764
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.7e-05 Score=61.76 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=59.4
Q ss_pred CCcceEEEecCCch-HHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCCCC----CccEEEecchhccCC
Q 018775 185 DSIQSLADVGGGTG-GALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDAIP----KADAVFMKWILHDWD 258 (350)
Q Consensus 185 ~~~~~vLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~p----~~D~i~~~~vlh~~~ 258 (350)
.++.+|||||||.| ..+..|+++ .+..+++.|+ |..++ ++..|+++|.. +||+|...+ |
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsir-----P 98 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIR-----P 98 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEES-----C
T ss_pred CCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcC-----C
Confidence 45679999999999 588888864 3678899998 65554 89999999654 699997754 4
Q ss_pred hHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 259 DEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 259 ~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
+.+.+.-+.++.+... .-++|.
T Consensus 99 P~El~~~i~~lA~~v~---adliI~ 120 (153)
T 2k4m_A 99 PAEIHSSLMRVADAVG---ARLIIK 120 (153)
T ss_dssp CTTTHHHHHHHHHHHT---CEEEEE
T ss_pred CHHHHHHHHHHHHHcC---CCEEEE
Confidence 5556666667776644 555553
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=2.1e-06 Score=79.32 Aligned_cols=93 Identities=14% Similarity=0.025 Sum_probs=72.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhCCC-------CCC-eEEEeccCCC--C--CC-CccEEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATAPV-------CEG-IFHVGGDMFD--A--IP-KADAVF 249 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-------~~~-i~~~~~d~~~--~--~p-~~D~i~ 249 (350)
.++.+|||++||+|.+++.++++.++ .+++.+|+ +..++.+++ .++ ++++.+|..+ . .+ .||+|+
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~ 130 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD 130 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence 35789999999999999999998655 57899999 888877664 345 9999999866 2 12 499999
Q ss_pred ecchhccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 250 MKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 250 ~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+.- .. . ...+++.+.+.|+ |||.|++..
T Consensus 131 lDP--~g--~--~~~~l~~a~~~Lk-~gGll~~t~ 158 (392)
T 3axs_A 131 LDP--FG--T--PVPFIESVALSMK-RGGILSLTA 158 (392)
T ss_dssp ECC--SS--C--CHHHHHHHHHHEE-EEEEEEEEE
T ss_pred ECC--Cc--C--HHHHHHHHHHHhC-CCCEEEEEe
Confidence 854 11 1 1357899999999 999777755
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.91 E-value=2e-05 Score=70.59 Aligned_cols=67 Identities=12% Similarity=0.108 Sum_probs=54.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CC-----CCccEEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AI-----PKADAVF 249 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~-----p~~D~i~ 249 (350)
..++.+|||+|||+|..+..+++.. +..+++++|+ +..++.+++ ..+++++.+|+.+ +. ..||+|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 5678899999999999999999874 5578999999 877776653 3579999999876 22 2489998
Q ss_pred e
Q 018775 250 M 250 (350)
Q Consensus 250 ~ 250 (350)
+
T Consensus 180 ~ 180 (309)
T 2b9e_A 180 L 180 (309)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.85 E-value=7e-05 Score=74.21 Aligned_cols=99 Identities=12% Similarity=0.144 Sum_probs=68.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCC---CCcEEEecc-hhHhhhC--CC----------CCCeEEEeccCCCC----CCC
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYP---HIKGINFDL-PHVVATA--PV----------CEGIFHVGGDMFDA----IPK 244 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a--~~----------~~~i~~~~~d~~~~----~p~ 244 (350)
.++.+|||.|||+|.++..+++..+ ..+++++|+ +.+++.| +. .....+...|+..+ ...
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 4578999999999999999998875 357899999 7776665 10 12235566677662 234
Q ss_pred ccEEEec--chhccCChHH-------------------------HHHHHHHHHhhCCCCCceEEEEe
Q 018775 245 ADAVFMK--WILHDWDDEA-------------------------CVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 245 ~D~i~~~--~vlh~~~~~~-------------------------~~~~L~~~~~~L~~pgG~lli~e 284 (350)
||+|+++ +......+.. ...++.++.+.|+ |||++.++-
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLK-pGGrLAfIl 465 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQ-DGTVISAIM 465 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSC-TTCEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcC-CCcEEEEEE
Confidence 9999995 3221111111 2347889999999 999998744
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.1e-05 Score=77.93 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=72.9
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCC---------------CCcEEEecc-hhHhhhCCC-------CC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYP---------------HIKGINFDL-PHVVATAPV-------CE 229 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p---------------~~~~~~~D~-~~~~~~a~~-------~~ 229 (350)
+..+++.+. ..+ .+|+|.+||+|.++..+.+... ..+++++|+ +.++..|+. ..
T Consensus 234 v~lmv~ll~--p~~-~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~ 310 (544)
T 3khk_A 234 VTLIVEMLE--PYK-GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDF 310 (544)
T ss_dssp HHHHHHHHC--CCS-EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHh--cCC-CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence 344455454 233 3999999999999988765332 467899999 877776653 23
Q ss_pred CeEEEeccCCC-C-CC--CccEEEec--chhccCChH-------------------------HHHHHHHHHHhhCCCCCc
Q 018775 230 GIFHVGGDMFD-A-IP--KADAVFMK--WILHDWDDE-------------------------ACVKILKNCRQAIPDKSG 278 (350)
Q Consensus 230 ~i~~~~~d~~~-~-~p--~~D~i~~~--~vlh~~~~~-------------------------~~~~~L~~~~~~L~~pgG 278 (350)
++.+..+|.+. + .+ .||+|+++ +....|..+ .-..++.++.+.|+ |||
T Consensus 311 ~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk-~gG 389 (544)
T 3khk_A 311 NFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLA-PTG 389 (544)
T ss_dssp BCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEE-EEE
T ss_pred ccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhc-cCc
Confidence 45558899887 3 22 49999995 322222211 11268999999999 999
Q ss_pred eEEEEe
Q 018775 279 KLVLVE 284 (350)
Q Consensus 279 ~lli~e 284 (350)
++.++-
T Consensus 390 r~aiVl 395 (544)
T 3khk_A 390 SMALLL 395 (544)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 988753
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=8e-05 Score=64.99 Aligned_cols=97 Identities=11% Similarity=0.087 Sum_probs=63.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----C-CCeEEEec-cCCC-CCCCccEEEecchhc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----C-EGIFHVGG-DMFD-AIPKADAVFMKWILH 255 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-~~i~~~~~-d~~~-~~p~~D~i~~~~vlh 255 (350)
+.++.+|||+||++|.++..+++..+-..+.++|+ ......... . +-+.+..+ |+.. +...+|+|++--..+
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~APn 158 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGES 158 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCcCC
Confidence 57889999999999999999998765556677776 322221111 1 22334433 5444 223599999965544
Q ss_pred cCCh-----HHHHHHHHHHHhhCCCCC-ceEEE
Q 018775 256 DWDD-----EACVKILKNCRQAIPDKS-GKLVL 282 (350)
Q Consensus 256 ~~~~-----~~~~~~L~~~~~~L~~pg-G~lli 282 (350)
-+. .....+|.-+.+.|+ || |.+++
T Consensus 159 -sG~~~~D~~rs~~LL~~A~~~Lk-pG~G~FV~ 189 (300)
T 3eld_A 159 -SSNPLVERDRTMKVLENFERWKH-VNTENFCV 189 (300)
T ss_dssp -CSSHHHHHHHHHHHHHHHHHHCC-TTCCEEEE
T ss_pred -CCCHHHHHHHHHHHHHHHHHHhc-CCCCcEEE
Confidence 221 123456888899999 99 99887
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=9.6e-06 Score=91.06 Aligned_cols=143 Identities=15% Similarity=0.141 Sum_probs=67.6
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCC-----CcEEEecc-hhHhhhCCCC---CCeEEEeccCCCC---CC-CccEEEec
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPH-----IKGINFDL-PHVVATAPVC---EGIFHVGGDMFDA---IP-KADAVFMK 251 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~---~~i~~~~~d~~~~---~p-~~D~i~~~ 251 (350)
.+..+||+||+|+|..+..+++.... .+++..|. +...+.+++. -.++....|..++ .+ .||+|+++
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~ 1318 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCN 1318 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEE
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEc
Confidence 35789999999999887777766432 25677777 5666666541 1233222233332 12 49999999
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
++||..+ +....|+++++.|+ |||++++.+......... ...++.-. . ..+....+.++|.++|+++||.
T Consensus 1319 ~vl~~t~--~~~~~l~~~~~lL~-p~G~l~~~e~~~~~~~g~----~~~~~~~~--~-r~~~~~~~~~~w~~~l~~~gf~ 1388 (2512)
T 2vz8_A 1319 CALATLG--DPAVAVGNMAATLK-EGGFLLLHTLLAGHPLGE----MVGFLTSP--E-QGGRHLLSQDQWESLFAGASLH 1388 (2512)
T ss_dssp CC-----------------------CCEEEEEEC---------------------------------CTTTTSSTTTTEE
T ss_pred ccccccc--cHHHHHHHHHHhcC-CCcEEEEEeccccccccc----cccccccc--c-ccCCcccCHHHHHHHHHhCCCc
Confidence 9999643 34578999999999 999999877543110000 00000000 0 0002334678999999999999
Q ss_pred eeEEEE
Q 018775 332 RCKIIS 337 (350)
Q Consensus 332 ~~~~~~ 337 (350)
.+....
T Consensus 1389 ~~~~~~ 1394 (2512)
T 2vz8_A 1389 LVALKR 1394 (2512)
T ss_dssp EEEEEE
T ss_pred eeeecc
Confidence 877643
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0014 Score=59.03 Aligned_cols=144 Identities=15% Similarity=0.209 Sum_probs=102.5
Q ss_pred CcceEEEecCCchHHHHHHHHH-CCCCcEEEecchhHhhhCC-----------------------------CCCCeEEEe
Q 018775 186 SIQSLADVGGGTGGALAEIVKS-YPHIKGINFDLPHVVATAP-----------------------------VCEGIFHVG 235 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~-----------------------------~~~~i~~~~ 235 (350)
+...|+-+|||.=....+|... .++++++-+|.|++++.-+ ...+..++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 5679999999999888888875 3678899999988766311 146889999
Q ss_pred ccCCC--CC---------C-C-ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhh
Q 018775 236 GDMFD--AI---------P-K-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVF 302 (350)
Q Consensus 236 ~d~~~--~~---------p-~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~ 302 (350)
.|+.+ .. + + .-++++..+|.+++.+++.++|+.+.+..+ +|.+++.|.+.+... +...+
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~--~~~~i~yE~i~p~d~------fg~~M 241 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE--RAMFINYEQVNMGDR------FGQIM 241 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS--SEEEEEEEECCTTSH------HHHHH
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC--CceEEEEeccCCCCH------HHHHH
Confidence 99986 11 1 1 458888999999999999999999999876 467778898854321 11111
Q ss_pred hhhHhhhcC---Cc--ccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 303 DLVMFAHTT---GG--KERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 303 ~~~~~~~~~---~~--~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
--++. ..+ .+ ...+.++..+.|.++||+.+++..+
T Consensus 242 ~~~l~-~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 242 IENLR-RRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHH-TTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHH-HhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 11111 111 01 1236788899999999999887765
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00013 Score=66.07 Aligned_cols=129 Identities=9% Similarity=0.036 Sum_probs=84.0
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCCCCeEEEeccCCC-CCC--CccEEEecchhccCChH
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFD-AIP--KADAVFMKWILHDWDDE 260 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~~~~ 260 (350)
+.++.++||+||++|..+..++++ +.+++++|..++........+|+++.+|.+. ..+ ++|+|++-.+.+ ..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p~ 283 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---PA 283 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---HH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---hH
Confidence 568999999999999999999987 5789999975444444446789999999998 332 499999866553 34
Q ss_pred HHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCce-eEEEEc
Q 018775 261 ACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHR-CKIISM 338 (350)
Q Consensus 261 ~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~-~~~~~~ 338 (350)
....++.+...... .++.++.+...... ...... ...+.+.+.|+..||.. +++.++
T Consensus 284 ~~~~l~~~wl~~~~-~~~aI~~lKL~mk~-------------~~~~l~-------~~~~~i~~~l~~~g~~~~l~akhL 341 (375)
T 4auk_A 284 KVAALMAQWLVNGW-CRETIFNLKLPMKK-------------RYEEVS-------HNLAYIQAQLDEHGINAQIQARQL 341 (375)
T ss_dssp HHHHHHHHHHHTTS-CSEEEEEEECCSSS-------------HHHHHH-------HHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HhHHHHHHHHhccc-cceEEEEEEecccc-------------hHHHHH-------HHHHHHHHHHHhcCcchhheehhh
Confidence 44555555555555 55555433322111 000000 01466778888999863 344444
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.66 E-value=3.9e-05 Score=66.70 Aligned_cols=71 Identities=13% Similarity=0.183 Sum_probs=53.0
Q ss_pred CCCc--ceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhH-------hhhCCC-----C---CCeEEEeccCCC--C-C
Q 018775 184 FDSI--QSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHV-------VATAPV-----C---EGIFHVGGDMFD--A-I 242 (350)
Q Consensus 184 ~~~~--~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~-------~~~a~~-----~---~~i~~~~~d~~~--~-~ 242 (350)
..++ .+|||+|||+|..+..++.. +.+++++|. +.+ ++.++. . .+++++++|..+ + .
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~ 161 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI 161 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC
Confidence 4455 89999999999999999998 457999999 654 332221 1 579999999876 2 3
Q ss_pred C-CccEEEecchhcc
Q 018775 243 P-KADAVFMKWILHD 256 (350)
Q Consensus 243 p-~~D~i~~~~vlh~ 256 (350)
+ .||+|++.-..++
T Consensus 162 ~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 162 TPRPQVVYLDPMFPH 176 (258)
T ss_dssp SSCCSEEEECCCCCC
T ss_pred cccCCEEEEcCCCCC
Confidence 3 4999999766554
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00021 Score=60.02 Aligned_cols=105 Identities=13% Similarity=0.095 Sum_probs=71.6
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC---C--CCCeEEEec-cCCC-CCCCc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP---V--CEGIFHVGG-DMFD-AIPKA 245 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~--~~~i~~~~~-d~~~-~~p~~ 245 (350)
..+.+.+. +.++.+|||+||++|.++...+......++.++|+ +.-.+.-. . -+.|+|+.+ |++. +.-++
T Consensus 68 ~ei~ek~~--l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~ 145 (267)
T 3p8z_A 68 QWFVERNM--VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKC 145 (267)
T ss_dssp HHHHHTTS--SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccc
Confidence 45566664 77888999999999999998887765557899998 43333211 1 477999999 9776 33459
Q ss_pred cEEEecchhccCC---hH-HHHHHHHHHHhhCCCCCceEEE
Q 018775 246 DAVFMKWILHDWD---DE-ACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 246 D~i~~~~vlh~~~---~~-~~~~~L~~~~~~L~~pgG~lli 282 (350)
|+++|--.=..=+ ++ ....+|.-+.+.|+ + |.++|
T Consensus 146 DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~-~-~~fc~ 184 (267)
T 3p8z_A 146 DTLLCDIGESSPSPTVEESRTIRVLKMVEPWLK-N-NQFCI 184 (267)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCS-S-CEEEE
T ss_pred cEEEEecCCCCCChhhhhhHHHHHHHHHHHhcc-c-CCEEE
Confidence 9999832221111 11 22346777789999 8 67766
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00033 Score=58.29 Aligned_cols=89 Identities=12% Similarity=0.086 Sum_probs=60.4
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---------CCCeEEEeccCCCC-------------
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---------CEGIFHVGGDMFDA------------- 241 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~~------------- 241 (350)
.+..+|||+||| .-+..+++ .++.+++.+|. ++..+.+++ .++|+++.+|..+.
T Consensus 29 ~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 29 EEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred hCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 357899999986 44455555 45788999987 666665542 45899999995431
Q ss_pred -----------C---CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 242 -----------I---PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 242 -----------~---p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
. .+||+|+.-. + .....+..+.+.|+ |||.|+ +|.
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg------~-k~~~~~~~~l~~l~-~GG~Iv-~DN 154 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDG------R-FRVGCALATAFSIT-RPVTLL-FDD 154 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECS------S-SHHHHHHHHHHHCS-SCEEEE-ETT
T ss_pred hHHHHhhhhhccccCCCCCEEEEeC------C-CchhHHHHHHHhcC-CCeEEE-EeC
Confidence 1 3499999843 1 12355666779999 999884 444
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.51 E-value=3.2e-05 Score=71.62 Aligned_cols=64 Identities=16% Similarity=0.275 Sum_probs=52.4
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----C----CCeEEEeccCCCC--C---CCccEEEe
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----C----EGIFHVGGDMFDA--I---PKADAVFM 250 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~----~~i~~~~~d~~~~--~---p~~D~i~~ 250 (350)
.++.+|||+|||+|..+..+++. ..+++++|+ +.+++.++. . ++++++++|+.+. . ..||+|++
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 34789999999999999998886 468999999 888887654 1 4799999999872 2 25999998
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=6.4e-05 Score=68.44 Aligned_cols=96 Identities=20% Similarity=0.149 Sum_probs=70.2
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--------------CCCeEEEeccCCCC-------C
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--------------CEGIFHVGGDMFDA-------I 242 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~i~~~~~d~~~~-------~ 242 (350)
.++.+||=||+|.|..+..+++. |.-+++.+|+ |.+++.+++ .+|++++.+|..+- .
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 35689999999999999999975 5578999999 888886543 25789999998751 1
Q ss_pred CCccEEEecchh-------ccCCh-HHHHHHHHHHHhhCCCCCceEEE
Q 018775 243 PKADAVFMKWIL-------HDWDD-EACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 243 p~~D~i~~~~vl-------h~~~~-~~~~~~L~~~~~~L~~pgG~lli 282 (350)
..||+|+.--.= ..... --...+++.++++|+ |||.++.
T Consensus 283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~-p~GVlv~ 329 (381)
T 3c6k_A 283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLK-QDGKYFT 329 (381)
T ss_dssp CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEE-EEEEEEE
T ss_pred CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcC-CCCEEEE
Confidence 249999974211 11011 113578899999999 9998875
|
| >2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A | Back alignment and structure |
|---|
Probab=97.45 E-value=6.3e-05 Score=50.87 Aligned_cols=55 Identities=13% Similarity=0.298 Sum_probs=45.7
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecC
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMT 95 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t 95 (350)
+..|++.|..++.++|..|||+.+|+ +...+.+.|..|...|+|.... .++|+++
T Consensus 12 ~~~IL~~L~~~~~~~s~~eLA~~lgl---sr~tv~~~l~~L~~~G~I~~~~------~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDGGPVAIFQLVKKCQV---PKKTLNQVLYRLKKEDRVSSPS------PKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEEEE------TTEEEEC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEecCC------CceEeeC
Confidence 45677777654358999999999999 8999999999999999998765 4778754
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00055 Score=58.43 Aligned_cols=104 Identities=15% Similarity=0.179 Sum_probs=62.1
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCC-cEEEecchhH--hhhCCC-CCC---eEEEec-cCCCCCC-C
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHI-KGINFDLPHV--VATAPV-CEG---IFHVGG-DMFDAIP-K 244 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~~~~--~~~a~~-~~~---i~~~~~-d~~~~~p-~ 244 (350)
.++.+++ .++++.+|||+||+.|..+...++. .++ .+.+.++.-. +..... ... +.+..+ |+++..+ +
T Consensus 63 ~EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~-~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~ 139 (269)
T 2px2_A 63 RWLVERR--FVQPIGKVVDLGCGRGGWSYYAATM-KNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKPSEI 139 (269)
T ss_dssp HHHHHTT--SCCCCEEEEEETCTTSHHHHHHTTS-TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSCCCC
T ss_pred HHHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhh-cCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCCCCC
Confidence 4555564 3789999999999999999988875 122 2123332111 111110 123 356657 9998333 5
Q ss_pred ccEEEecchhccCC----hH-HHHHHHHHHHhhCCCCCc-eEEE
Q 018775 245 ADAVFMKWILHDWD----DE-ACVKILKNCRQAIPDKSG-KLVL 282 (350)
Q Consensus 245 ~D~i~~~~vlh~~~----~~-~~~~~L~~~~~~L~~pgG-~lli 282 (350)
+|+|++-..-. -+ |. .....|.-+.+.|+ ||| .+++
T Consensus 140 ~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk-~gG~~Fvv 181 (269)
T 2px2_A 140 SDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLS-RGPKEFCI 181 (269)
T ss_dssp CSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHT-TCCSEEEE
T ss_pred CCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhh-cCCcEEEE
Confidence 99999833221 11 11 12235667778999 999 7776
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00017 Score=62.78 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=60.4
Q ss_pred hhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--CCCeEEEeccCCC-C--C--
Q 018775 171 IVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--CEGIFHVGGDMFD-A--I-- 242 (350)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~--~-- 242 (350)
.+.+.+++.+. ..++..+||.+||.|..+..++++ +.+++++|. |.+++.+++ .+|++++++|+.+ + .
T Consensus 9 VLl~e~le~L~--~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~l~~~L~~ 84 (285)
T 1wg8_A 9 VLYQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAA 84 (285)
T ss_dssp TTHHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHH
T ss_pred HHHHHHHHhhC--CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcchHHHHHHH
Confidence 34566777777 677889999999999999999998 679999999 888765542 2689999999976 2 1
Q ss_pred ---CCccEEEe
Q 018775 243 ---PKADAVFM 250 (350)
Q Consensus 243 ---p~~D~i~~ 250 (350)
..+|.|++
T Consensus 85 ~g~~~vDgIL~ 95 (285)
T 1wg8_A 85 LGVERVDGILA 95 (285)
T ss_dssp TTCSCEEEEEE
T ss_pred cCCCCcCEEEe
Confidence 24888876
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.001 Score=57.80 Aligned_cols=105 Identities=11% Similarity=0.135 Sum_probs=69.2
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhC---CC--CCCeEEEec-cCCC-CCCCc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATA---PV--CEGIFHVGG-DMFD-AIPKA 245 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a---~~--~~~i~~~~~-d~~~-~~p~~ 245 (350)
..+.+.+. +.+..+||||||++|.++...+....-.++.++|+ ..-.+.- +. -+-|.++.+ |++. +..++
T Consensus 84 ~ei~~~~~--l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~ 161 (321)
T 3lkz_A 84 RWLVERRF--LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECC 161 (321)
T ss_dssp HHHHHTTS--CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCC
T ss_pred HHHHHhcC--CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCC
Confidence 45555655 67788999999999999998777655557889997 3322211 11 244888888 8776 33459
Q ss_pred cEEEecchhccCChH-----HHHHHHHHHHhhCCCCC-ceEEE
Q 018775 246 DAVFMKWILHDWDDE-----ACVKILKNCRQAIPDKS-GKLVL 282 (350)
Q Consensus 246 D~i~~~~vlh~~~~~-----~~~~~L~~~~~~L~~pg-G~lli 282 (350)
|+|+|--. .--+.+ ....+|.-+.+.|+ +| |.++|
T Consensus 162 D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~-~~~~~f~~ 202 (321)
T 3lkz_A 162 DTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLH-RGPREFCV 202 (321)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHT-TCCCEEEE
T ss_pred CEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhc-cCCCcEEE
Confidence 99988322 211221 12346777788898 88 77776
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00072 Score=65.09 Aligned_cols=98 Identities=20% Similarity=0.266 Sum_probs=69.8
Q ss_pred CcceEEEecCCchHHHHHHHHHC---CCCcEEEecc-hhHhhhCCC--------CCCeEEEeccCCC-CCC-----CccE
Q 018775 186 SIQSLADVGGGTGGALAEIVKSY---PHIKGINFDL-PHVVATAPV--------CEGIFHVGGDMFD-AIP-----KADA 247 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~-~~p-----~~D~ 247 (350)
.+.+|+|.+||+|.++..+.+.. +..+++++|+ +.++..++. .+++.+..+|.+. +.| .||+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 57799999999999999988874 3578999999 777776642 2468899999987 322 3999
Q ss_pred EEec--chhccCChH--------------------HHHHHHHHHHhhCCCCCceEEEEe
Q 018775 248 VFMK--WILHDWDDE--------------------ACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 248 i~~~--~vlh~~~~~--------------------~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
|+++ +. ..|... .-..++.++.+.|+.|||++.++-
T Consensus 301 IvaNPPf~-~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~Vl 358 (542)
T 3lkd_A 301 VLMNPPYS-AKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVL 358 (542)
T ss_dssp EEECCCTT-CCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEE
T ss_pred EEecCCcC-CccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEe
Confidence 9985 22 112100 012478888888874688887643
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00091 Score=59.71 Aligned_cols=147 Identities=13% Similarity=0.048 Sum_probs=94.3
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC---------CCCeEEEeccCCCCC------CC-----c
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV---------CEGIFHVGGDMFDAI------PK-----A 245 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~i~~~~~d~~~~~------p~-----~ 245 (350)
+...||+||||-=....++.. .++++++-+|.|.+++..++ ..+..++..|+.+.. .. .
T Consensus 102 g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR 180 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred CCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCC
Confidence 456799999997777655542 12478899999988775432 567889999998621 11 3
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhh-hhh-Hhh-----hcCCccc-CC
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVF-DLV-MFA-----HTTGGKE-RT 317 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~-~~~-~~~-----~~~~~~~-~s 317 (350)
-++++..+||++++++...+|+.+.+.+. ||+.|+ +|.+.++..... .....+. ... -.. ...+-.. .+
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~-~gs~l~-~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 257 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSA-VGSRIA-VETSPLHGDEWR-EQMQLRFRRVSDALGFEQAVDVQELIYHDE 257 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCC-TTCEEE-EECCCTTCSHHH-HHHHHHHHHHHC-----------CCTTCCT
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCC-CCeEEE-EEecCCCCcchh-HHHHHHHHHHHHHcCCcCCCCccccccCCC
Confidence 47888999999999999999999999988 887655 565544321000 0000011 000 000 0010122 25
Q ss_pred -HHHHHHHHHhcCCceeEEEE
Q 018775 318 -EQEWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 318 -~~e~~~ll~~aGf~~~~~~~ 337 (350)
.++..+.|.+.||+.+ ...
T Consensus 258 ~~~~~~~~f~~~G~~~~-~~~ 277 (310)
T 2uyo_A 258 NRAVVADWLNRHGWRAT-AQS 277 (310)
T ss_dssp TCCCHHHHHTTTTEEEE-EEE
T ss_pred ChHHHHHHHHHCcCccc-cCC
Confidence 7889999999999988 443
|
| >3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00019 Score=53.58 Aligned_cols=62 Identities=16% Similarity=0.241 Sum_probs=53.3
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhc--CCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhhc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRI--DSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLH 103 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~--~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~~ 103 (350)
+..|++.|... +++|+.+||+.+ ++ +...+++-|+.|...|+|++.+ .+.|++|+.+..+..
T Consensus 15 d~~IL~~L~~~-g~~s~~eLA~~l~~gi---S~~aVs~rL~~Le~~GLV~~~~------rg~Y~LT~~G~~~l~ 78 (111)
T 3b73_A 15 DDRILEIIHEE-GNGSPKELEDRDEIRI---SKSSVSRRLKKLADHDLLQPLA------NGVYVITEEGEAYLN 78 (111)
T ss_dssp HHHHHHHHHHH-SCBCHHHHHTSTTCCS---CHHHHHHHHHHHHHTTSEEECS------TTCEEECHHHHHHHT
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEecC------CceEEECchHHHHHH
Confidence 45678888654 699999999999 99 8899999999999999999986 468999999874443
|
| >1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00029 Score=48.98 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=49.4
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcc-cHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIP-YLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~-~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
+-.|++.|... +|.|+.+||+.+|+ .+. .+++.|..|+..|+|.+.+. + .-.|++|+.+.
T Consensus 13 ~~~IL~~Lk~~-g~~ta~eiA~~Lgi---t~~~aVr~hL~~Le~eGlV~~~~~---g-RP~w~LT~~g~ 73 (79)
T 1xmk_A 13 KEKICDYLFNV-SDSSALNLAKNIGL---TKARDINAVLIDMERQGDVYRQGT---T-PPIWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHHT-CCEEHHHHHHHHCG---GGHHHHHHHHHHHHHTTSEEEECS---S-SCEEEECHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHcCC---CcHHHHHHHHHHHHHCCCEEecCC---C-CCCeEeCHhHH
Confidence 45567777776 79999999999999 777 99999999999999997652 1 23799998775
|
| >1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00039 Score=50.57 Aligned_cols=62 Identities=10% Similarity=0.092 Sum_probs=52.4
Q ss_pred HHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 25 MALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
.+|..-.+..|++.| . +++++.|||+.+++ +...+.+.|+.|...|++.+.. +.|++++.+.
T Consensus 26 ~~l~~~~r~~Il~~L-~--~~~~~~eLa~~l~i---s~~tv~~~L~~L~~~Glv~~~~-------g~y~l~~~g~ 87 (96)
T 1y0u_A 26 YAVTNPVRRKILRML-D--KGRSEEEIMQTLSL---SKKQLDYHLKVLEAGFCIERVG-------ERWVVTDAGK 87 (96)
T ss_dssp HHHSCHHHHHHHHHH-H--TTCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET-------TEEEECTTTC
T ss_pred HHhCCHHHHHHHHHH-c--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEC-------CEEEECCCch
Confidence 444555677888888 5 79999999999999 8899999999999999999885 5898887653
|
| >1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00045 Score=47.96 Aligned_cols=58 Identities=19% Similarity=0.361 Sum_probs=46.9
Q ss_pred hcChhhhhhhCC--CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 32 ELRLADIMHSHG--SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 32 ~lglfd~L~~~~--~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
+..|++.|...+ +++|+.|||+++|+ +...+.+.|..|...|+|...+.. ++.|..++
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L~~~G~I~~~g~~----~~~W~i~~ 75 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAGT----PPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHHHHHHHTSEEEECSS----SCEEEECC
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCCC----CCceEecC
Confidence 456777776641 27999999999999 889999999999999999998632 57787664
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0027 Score=56.07 Aligned_cols=131 Identities=22% Similarity=0.179 Sum_probs=78.3
Q ss_pred CCcceEEEecCCchHHHHH----HHHHCCCCcE--EEecchhHhhh------------------CCC--CCCe--EEEec
Q 018775 185 DSIQSLADVGGGTGGALAE----IVKSYPHIKG--INFDLPHVVAT------------------APV--CEGI--FHVGG 236 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~----l~~~~p~~~~--~~~D~~~~~~~------------------a~~--~~~i--~~~~~ 236 (350)
.+.-+|||+|=|+|..... +.+..|+.+. +.++. ..++. ... ..+| ++.-|
T Consensus 95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek-~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~G 173 (308)
T 3vyw_A 95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEK-ELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLG 173 (308)
T ss_dssp CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEES-SCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEES
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecH-HHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEec
Confidence 4567999999999975433 2345676554 44442 11110 000 2344 45678
Q ss_pred cCCC---CCC--CccEEEecc-hhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhc
Q 018775 237 DMFD---AIP--KADAVFMKW-ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHT 310 (350)
Q Consensus 237 d~~~---~~p--~~D~i~~~~-vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (350)
|+.+ .++ .+|++++-. .-..-|+--...++++++++++ |||++.- .+
T Consensus 174 Da~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~-pgg~laT--------------------------Yt 226 (308)
T 3vyw_A 174 DARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERID-EKGYWVS--------------------------YS 226 (308)
T ss_dssp CHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEE-EEEEEEE--------------------------SC
T ss_pred hHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhC-CCcEEEE--------------------------Ee
Confidence 8876 233 389988732 2221122223578999999999 9998762 01
Q ss_pred CCcccCCHHHHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 311 TGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 311 ~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
. ...+++-|.++||.+.++...++-..++.|.+
T Consensus 227 a------ag~VRR~L~~aGF~V~k~~G~g~KReml~A~~ 259 (308)
T 3vyw_A 227 S------SLSVRKSLLTLGFKVGSSREIGRKRKGTVASL 259 (308)
T ss_dssp C------CHHHHHHHHHTTCEEEEEECC---CEEEEEES
T ss_pred C------cHHHHHHHHHCCCEEEecCCCCCCCceeEEec
Confidence 1 35667889999999887766666666776654
|
| >1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00079 Score=47.12 Aligned_cols=60 Identities=17% Similarity=0.321 Sum_probs=46.1
Q ss_pred hcChhhhhhhCCC---CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 32 ELRLADIMHSHGS---PITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 32 ~lglfd~L~~~~~---~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
+..|++.|.+. + ++|+.|||+++|+ +...+++.|..|...|+|...+.. ++.|.+.+...
T Consensus 12 ~~~IL~~L~~~-~pg~~~t~~eLA~~Lgv---sr~tV~~~L~~Le~~G~I~~~g~~----~~~W~i~~~~~ 74 (81)
T 1qbj_A 12 EQRILKFLEEL-GEGKATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAGT----PPLWKIAVSTQ 74 (81)
T ss_dssp HHHHHHHHHHH-CTTCCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEESSS----SCEEEEC----
T ss_pred HHHHHHHHHHc-CCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecCCC----CCeeEEeCcHH
Confidence 44566677654 4 7999999999999 889999999999999999987632 57888776554
|
| >3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00074 Score=59.29 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=48.0
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
+.|++.|...++++|+.|||+++|+ +...+.|+|+.|+..|||.+++ +++|++.+...
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl---~ksTv~RlL~tL~~~G~v~~~~------~~~Y~LG~~~~ 90 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDL---PKSSAHGLLAVMTELDLLARSA------DGTLRIGPHSL 90 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTC---C--CHHHHHHHHHHTTSEEECT------TSEEEECTHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC------CCcEEehHHHH
Confidence 4577777765468999999999999 7889999999999999999987 57899987554
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0027 Score=55.64 Aligned_cols=93 Identities=17% Similarity=0.092 Sum_probs=65.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHC-----CCCcEEEecc-hhH--------------------------hhhCCC-----
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSY-----PHIKGINFDL-PHV--------------------------VATAPV----- 227 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~--------------------------~~~a~~----- 227 (350)
....+|||+|+..|..++.++... ++.+++++|. +.. .+.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 446799999999999998887654 4778888884 211 111111
Q ss_pred ---CCCeEEEeccCCC--C-CC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 228 ---CEGIFHVGGDMFD--A-IP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 228 ---~~~i~~~~~d~~~--~-~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
.++|+++.||+.+ + .+ .+|+|.+=.-.+ +.....|..+...|+ |||.+++
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~-pGGiIv~ 242 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVS-VGGYVIV 242 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEE-EEEEEEE
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcC-CCEEEEE
Confidence 3789999999987 2 32 388888743221 234578999999999 9997765
|
| >1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00086 Score=46.71 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=47.9
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
....|++.|.. .+.|+.|||+++|+ +...+++.|..|+..|+|.+...+ +-.|+++....
T Consensus 18 ~~~~IL~lL~~--~g~sa~eLAk~Lgi---Sk~aVr~~L~~Le~eG~I~~~~~~----PP~W~~~~~~~ 77 (82)
T 1oyi_A 18 IVCEAIKTIGI--EGATAAQLTRQLNM---EKREVNKALYDLQRSAMVYSSDDI----PPRWFMTTEAD 77 (82)
T ss_dssp HHHHHHHHHSS--STEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEECSSS----SCEEESCC---
T ss_pred HHHHHHHHHHH--cCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCCCC----CCcceeccCcc
Confidence 45567778876 34999999999999 889999999999999999998743 56788776543
|
| >3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0048 Score=47.74 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=52.7
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ ++..+.+.++.|+..|++.+.....+.....|.+|+.+..+.
T Consensus 32 ~~~~iL~~l~~~-~~~~~~ela~~l~i---s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 32 TRYSILQTLLKD-APLHQLALQERLQI---DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 456677788654 68999999999999 889999999999999999987532111123588888887555
|
| >3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0036 Score=48.66 Aligned_cols=95 Identities=12% Similarity=0.145 Sum_probs=59.7
Q ss_pred hHHhhhHHHHHHHHHHhHHHHHHHH-----HHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCce
Q 018775 4 HEELLRGQAEVWQLMFAFADSMALK-----SAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIF 78 (350)
Q Consensus 4 ~~~~~~~~~~l~~~~~g~~~~~~l~-----~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l 78 (350)
++++...+..+...+.......+-. +..++.++..|... +++|..+||+.+++ ++..+.+.++.|+..|+|
T Consensus 6 ~~~l~~~l~~~~~~~~~~~~~~l~~~~~~lt~~~~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~L~~~Glv 81 (142)
T 3ech_A 6 NPDLMPALMAVFQHVRTRIQSELDCQRLDLTPPDVHVLKLIDEQ-RGLNLQDLGRQMCR---DKALITRKIRELEGRNLV 81 (142)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHT-TTCCHHHHHHHHC------CHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhC-CCcCHHHHHHHhCC---CHHHHHHHHHHHHHCCCE
Confidence 3445555555555555444433333 35677788888876 69999999999999 889999999999999999
Q ss_pred eecccCCCCCCCeEecChhchhhh
Q 018775 79 AVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 79 ~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.+.....+.-.-.+.+|+.+..+.
T Consensus 82 ~r~~~~~DrR~~~~~LT~~G~~~~ 105 (142)
T 3ech_A 82 RRERNPSDQRSFQLFLTDEGLAIH 105 (142)
T ss_dssp EC----------CCEECHHHHHHH
T ss_pred eeccCCCCCCeeeeEECHHHHHHH
Confidence 987521100011356776665443
|
| >3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0017 Score=47.65 Aligned_cols=64 Identities=20% Similarity=0.364 Sum_probs=49.0
Q ss_pred HHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 25 MALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
.+|.--.++.|+..|.+ ++.++.|||+.+|+ ++..+.+.|+.|...|++.+.... ....|++|+
T Consensus 18 ~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~i---s~~tvs~~L~~L~~~Glv~~~~~g---~~~~y~l~~ 81 (102)
T 3pqk_A 18 KTLSHPVRLMLVCTLVE--GEFSVGELEQQIGI---GQPTLSQQLGVLRESGIVETRRNI---KQIFYRLTE 81 (102)
T ss_dssp HHHCSHHHHHHHHHHHT--CCBCHHHHHHHHTC---CTTHHHHHHHHHHHTTSEEEECSS---SCCEEEECS
T ss_pred HHcCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEeC---CEEEEEECc
Confidence 34444566677777765 79999999999999 788999999999999999887520 023576664
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.042 Score=54.67 Aligned_cols=146 Identities=13% Similarity=0.177 Sum_probs=102.9
Q ss_pred CcceEEEecCCchHHHHHHHHHCC--------CCcEEEecchhHhhhCCC------------------------------
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYP--------HIKGINFDLPHVVATAPV------------------------------ 227 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~a~~------------------------------ 227 (350)
+...|+-+|||.=....+|...++ +++++-+|.|++++.-++
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 578999999999999999987755 678888888887653211
Q ss_pred CCCeEEEeccCCCC--C-----------CC-ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCC
Q 018775 228 CEGIFHVGGDMFDA--I-----------PK-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNN 293 (350)
Q Consensus 228 ~~~i~~~~~d~~~~--~-----------p~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~ 293 (350)
+++..++..|+.+. . ++ .-++++..+|.+++.+++.++|+.+.+. |++.+++.|.+.+.....
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~---~~~~~~~~e~~~~~~~~d 263 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM---ENSHFIILEQLIPKGPFE 263 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS---SSEEEEEEEECCTTCTTS
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC---CCceEEEEEeecCCCCCC
Confidence 14889999999872 1 11 3478888999999999999999999853 567888889887754433
Q ss_pred cccccchhhhhhHhhhcC----C-cccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 294 IFGDMGLVFDLVMFAHTT----G-GKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~----~-~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
++ ...+ ...+...+ + ....+.++..+.|.+.||+.+....+
T Consensus 264 ~f---~~~m-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 264 PF---SKQM-LAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp HH---HHHH-HHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred hH---HHHH-HHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 22 1111 11111110 0 12236899999999999998776654
|
| >3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.001 Score=48.44 Aligned_cols=64 Identities=14% Similarity=0.360 Sum_probs=50.5
Q ss_pred HHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 25 MALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
.+|.--.++.++..|.+ ++.|+.|||+.+|+ +...+.+.|+.|...|++.+... +....|++++
T Consensus 18 ~~l~~~~r~~Il~~L~~--~~~~~~ela~~l~i---s~~tvs~~L~~L~~~Glv~~~~~---g~~~~y~l~~ 81 (98)
T 3jth_A 18 KAMANERRLQILCMLHN--QELSVGELCAKLQL---SQSALSQHLAWLRRDGLVTTRKE---AQTVYYTLKS 81 (98)
T ss_dssp HHHCSHHHHHHHHHTTT--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECC---TTCCEEEECC
T ss_pred HHcCCHHHHHHHHHHhc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEe---CCEEEEEECH
Confidence 44555567788888876 79999999999999 88999999999999999988752 0123466654
|
| >2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00098 Score=46.10 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=34.6
Q ss_pred CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 43 GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 43 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
|+|.|+.|||+.+|+ ++..+++-|++|+..|+|.+..
T Consensus 22 g~~psv~EIa~~lgv---S~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 22 GAPVKTRDIADAAGL---SIYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp TSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEES
T ss_pred CCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEecC
Confidence 479999999999999 7888999999999999999985
|
| >2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.001 Score=49.87 Aligned_cols=63 Identities=13% Similarity=0.157 Sum_probs=48.2
Q ss_pred HHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 29 SAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 29 ~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
.-.++.|+..|.. ++.|..|||+.+|+ +...+.+.|+.|...|++.+.... ....|++|+...
T Consensus 20 ~~~r~~IL~~L~~--~~~~~~ela~~l~i---s~~tv~~~l~~L~~~gli~~~~~g---r~~~y~l~~~~~ 82 (114)
T 2oqg_A 20 DETRWEILTELGR--ADQSASSLATRLPV---SRQAIAKHLNALQACGLVESVKVG---REIRYRALGAEL 82 (114)
T ss_dssp CHHHHHHHHHHHH--SCBCHHHHHHHSSS---CHHHHHHHHHHHHHTTSEEEEEET---TEEEEEECSHHH
T ss_pred ChHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeEEecC---CEEEEEechHHH
Confidence 3455667777754 79999999999999 889999999999999999986510 012377776553
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0042 Score=56.45 Aligned_cols=105 Identities=14% Similarity=0.084 Sum_probs=73.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC------------CCCCeEEEeccCCC-C--CC-Ccc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP------------VCEGIFHVGGDMFD-A--IP-KAD 246 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~~i~~~~~d~~~-~--~p-~~D 246 (350)
..++.+|||+.+|.|.=+..+++..++..++..|. +.-++..+ ...++.+...|... + .+ .||
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 67789999999999999999999877667888887 54433221 13578888888876 2 23 499
Q ss_pred EEEe----cc----hhc-------cCChHHH-------HHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 247 AVFM----KW----ILH-------DWDDEAC-------VKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 247 ~i~~----~~----vlh-------~~~~~~~-------~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
.|++ +. ++. .+..++. .++|+++.+.|| |||+|+-....+..
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk-pGG~LVYsTCSl~~ 289 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATK-PGGHVVYSTCSLSH 289 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEE-EEEEEEEEESCCCT
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCC-CCcEEEEEeCCCch
Confidence 9986 22 111 1222221 378999999999 99998866555443
|
| >1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0017 Score=49.39 Aligned_cols=66 Identities=12% Similarity=0.258 Sum_probs=50.0
Q ss_pred HHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 24 SMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 24 ~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
..+|.--.++.++..|... ++.|+.|||+.+|+ +...+.+.|+.|...|++.....+ ....|++++
T Consensus 36 ~~al~~~~rl~IL~~L~~~-~~~s~~eLa~~l~i---s~stvs~~L~~L~~~Glv~~~~~g---r~~~y~l~~ 101 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQD-EELCVCDIANILGV---TIANASHHLRTLYKQGVVNFRKEG---KLALYSLGD 101 (122)
T ss_dssp HHHHHSHHHHHHHHHHHHS-SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC-------CCEEEESC
T ss_pred HHHhCCHHHHHHHHHHHHC-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEEC---CEEEEEECH
Confidence 3445555677888888743 79999999999999 889999999999999999987520 012476664
|
| >2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0015 Score=46.14 Aligned_cols=44 Identities=14% Similarity=0.298 Sum_probs=39.9
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
|.+.|.+. +.++++|||+.+++ ++..++|.|+.|+..|++.+..
T Consensus 7 Il~~L~~~-g~vsv~eLA~~l~V---S~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 7 VRDMLALQ-GRMEAKQLSARLQT---PQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHS-CSEEHHHHHHHTTC---CHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 56777765 79999999999999 8999999999999999999984
|
| >1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0016 Score=45.11 Aligned_cols=43 Identities=12% Similarity=0.271 Sum_probs=39.5
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeec
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVH 81 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 81 (350)
|.+.|.+. +.++++|||+.+++ ++..++|-|+.|+..|++.+.
T Consensus 7 Il~~L~~~-g~vsv~eLa~~l~V---S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALR-GRMEAAQISQTLNT---PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHS-CSBCHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc-CCCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEe
Confidence 56777765 79999999999999 899999999999999999998
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0056 Score=53.20 Aligned_cols=91 Identities=16% Similarity=0.154 Sum_probs=60.8
Q ss_pred CCCcceEEEecC------CchHHHHHHHHHCCC-CcEEEecchhHhhhCCCCCCeEEEeccCCC-C-CCCccEEEecc--
Q 018775 184 FDSIQSLADVGG------GTGGALAEIVKSYPH-IKGINFDLPHVVATAPVCEGIFHVGGDMFD-A-IPKADAVFMKW-- 252 (350)
Q Consensus 184 ~~~~~~vLDvG~------G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~-~p~~D~i~~~~-- 252 (350)
.+.+.+|||+|+ ..|.. .+.+..|. ..++.+|+.++...+. .++.||+.+ . ..++|+|++-.
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda~-----~~IqGD~~~~~~~~k~DLVISDMAP 179 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDAD-----STLIGDCATVHTANKWDLIISDMYD 179 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSSS-----EEEESCGGGEEESSCEEEEEECCCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCCC-----eEEEccccccccCCCCCEEEecCCC
Confidence 567899999996 67773 34445776 6889999855443322 458999876 2 23599998821
Q ss_pred -h-hc---cC--ChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 253 -I-LH---DW--DDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 253 -v-lh---~~--~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
. -+ .- ...-+...+.=+.+.|+ |||.|++
T Consensus 180 NtTG~~D~d~~Rs~~L~ElALdfA~~~Lk-pGGsFvV 215 (344)
T 3r24_A 180 PRTKHVTKENDSKEGFFTYLCGFIKQKLA-LGGSIAV 215 (344)
T ss_dssp TTSCSSCSCCCCCCTHHHHHHHHHHHHEE-EEEEEEE
T ss_pred CcCCccccchhHHHHHHHHHHHHHHHhCc-CCCEEEE
Confidence 1 11 10 11135667777889999 9999986
|
| >3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0011 Score=57.56 Aligned_cols=61 Identities=20% Similarity=0.192 Sum_probs=50.1
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
+.|++.|...++++|+.|||+++|+ +...+.|+|+.|+..||+.+++. .++|++.+....+
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl---~ksT~~RlL~tL~~~G~v~~~~~-----~~~Y~lG~~~~~l 69 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGM---NKATVYRLMSELQEAGFVEQVEG-----ARSYRLGPQVLRL 69 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEECSS-----SSEEEECTTHHHH
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEcCC-----CCcEEcCHHHHHH
Confidence 4567777653368999999999999 88999999999999999999873 3789988755433
|
| >4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0045 Score=47.62 Aligned_cols=80 Identities=10% Similarity=0.007 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhc-CCCCCCcccHHHHHHHhhcCCceeecccCCCC
Q 018775 9 RGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRI-DSSCPDIPYLARLMRMLVRKGIFAVHQSSDGG 87 (350)
Q Consensus 9 ~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~ 87 (350)
-+...+++++.+-|...+|... .. ++.+..||++.+ |+ +...|.+.|+.|+..|+|++.....+.
T Consensus 14 Cpi~~~l~~lg~kW~l~IL~~L---------~~--g~~rf~eL~~~l~gI---s~~~Ls~~L~~Le~~GLV~R~~~~~d~ 79 (131)
T 4a5n_A 14 SPVEFTLDVIGGKWKGILFYHM---------ID--GKKRFNEFRRICPSI---TQRMLTLQLRELEADGIVHREVYHQVP 79 (131)
T ss_dssp CHHHHHHHHHCSSSHHHHHHHH---------TT--SCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred CcHHHHHHHHcCcCHHHHHHHH---------hc--CCcCHHHHHHHhccc---CHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 3566777777777776666543 22 799999999999 99 889999999999999999987521111
Q ss_pred CCCeEecChhchhhh
Q 018775 88 DETLYKMTHISKWLL 102 (350)
Q Consensus 88 ~~~~~~~t~~s~~l~ 102 (350)
..-.|++|+.+..+.
T Consensus 80 r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 80 PKVEYSLTEFGRTLE 94 (131)
T ss_dssp CEEEEEECTTGGGGH
T ss_pred CeEEEEECHhHHHHH
Confidence 123689998887665
|
| >3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0018 Score=47.01 Aligned_cols=65 Identities=9% Similarity=0.177 Sum_probs=49.5
Q ss_pred HHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChh
Q 018775 26 ALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHI 97 (350)
Q Consensus 26 ~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~ 97 (350)
++..-.++.++..|... ++.|..|||+.+|+ +...+.+.|+.|...|++.+.... ....|++|+.
T Consensus 20 ~l~~~~~~~il~~l~~~-~~~s~~ela~~l~i---s~~tvs~~l~~L~~~glv~~~~~~---r~~~y~l~~~ 84 (99)
T 3cuo_A 20 AMSHPKRLLILCMLSGS-PGTSAGELTRITGL---SASATSQHLARMRDEGLIDSQRDA---QRILYSIKNE 84 (99)
T ss_dssp HHCSHHHHHHHHHHTTC-CSEEHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEECS---SCEEEEECCH
T ss_pred HhCChHHHHHHHHHHhC-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEecC---CEEEEEEChH
Confidence 44445667788888663 59999999999999 889999999999999999987510 0124666654
|
| >2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0031 Score=46.69 Aligned_cols=76 Identities=11% Similarity=0.117 Sum_probs=52.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhc-CCCCCCcccHHHHHHHhhcCCceeecccCCCCCCC
Q 018775 12 AEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRI-DSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDET 90 (350)
Q Consensus 12 ~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~ 90 (350)
..+++++.+-|...+| ..|.. ++.+..||++.+ ++ ++..+.+.|+.|...|+|++.....+...-
T Consensus 5 ~~~l~~l~~~~~~~IL---------~~L~~--~~~~~~eLa~~l~~i---s~~tls~~L~~Le~~GlI~r~~~~~d~r~~ 70 (107)
T 2hzt_A 5 EATLEVIGGKWKXVIL---------XHLTH--GKKRTSELKRLMPNI---TQKMLTQQLRELEADGVINRIVYNQVPPKV 70 (107)
T ss_dssp HHHHHHHCSTTHHHHH---------HHHTT--CCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEECSSSCEE
T ss_pred HHHHHHHcCccHHHHH---------HHHHh--CCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCEEEeecCCCCCeE
Confidence 3444544444444443 34443 699999999999 99 899999999999999999987521111113
Q ss_pred eEecChhchhh
Q 018775 91 LYKMTHISKWL 101 (350)
Q Consensus 91 ~~~~t~~s~~l 101 (350)
.|.+|+.+..+
T Consensus 71 ~y~LT~~G~~l 81 (107)
T 2hzt_A 71 EYELSEYGRSL 81 (107)
T ss_dssp EEEECTTGGGG
T ss_pred EEEECccHHHH
Confidence 58888776544
|
| >1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0012 Score=47.98 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=52.9
Q ss_pred HHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 25 MALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
.++..-.++.++..|... ++.|..+||+.+++ +...+.+.|+.|...|++.+.....++....|++|+.+.
T Consensus 11 ~~l~~~~~~~iL~~L~~~-~~~~~~ela~~l~i---s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~ 81 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR-RKAPFSQIQKVLDL---TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGM 81 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHH
T ss_pred cccCChHHHHHHHHHHhc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHH
Confidence 455566677788877543 68999999999999 889999999999999999965311111123578887664
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0049 Score=54.96 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=57.1
Q ss_pred hhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC--CCCeEEEeccCCC
Q 018775 171 IVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV--CEGIFHVGGDMFD 240 (350)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~ 240 (350)
.+..++++.+. ..++..+||..||.|..+..++++. |+.+++++|. +.+++.++. .+|++++.+++.+
T Consensus 44 VLl~Evl~~L~--i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 44 VLLDEAVNGLN--IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp TTTHHHHHHTC--CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred ccHHHHHHhhC--CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 34567777777 6788999999999999999999884 7889999999 888887754 5789999888776
|
| >2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0022 Score=55.12 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=49.5
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
+.|++.|...++++|+.|||+.+|+ +...+.|+|+.|+..||+.++.. +++|++++....+
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl---~~stv~r~l~~L~~~G~v~~~~~-----~~~Y~lg~~~~~l 69 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGL---PRSTVQRIINALEEEFLVEALGP-----AGGFRLGPALGQL 69 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTS---CHHHHHHHHHHHHTTTSEEECGG-----GCEEEECSHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeCC-----CCeEEECHHHHHH
Confidence 3456667654358999999999999 88999999999999999999862 3789998765444
|
| >1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0028 Score=54.68 Aligned_cols=58 Identities=12% Similarity=0.236 Sum_probs=48.2
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
+.|++.|...++++|+.|||+.+|+ +...+.|+|+.|+..|++.++. +++|++++...
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl---~~stv~r~l~~L~~~G~v~~~~------~~~Y~lg~~~~ 68 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNM---SVSNAYKYMVVLEEKGFVLRKK------DKRYVPGYKLI 68 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECT------TSCEEECTHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEECC------CCcEEECHHHH
Confidence 4566667654358999999999999 8899999999999999999984 48899887543
|
| >1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.002 Score=47.69 Aligned_cols=52 Identities=10% Similarity=0.270 Sum_probs=43.6
Q ss_pred HHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 26 ALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 26 ~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+|..-.++.++..|.. ++.++.|||+.+|+ +...+.+.|+.|...|++....
T Consensus 22 ~l~~~~r~~IL~~L~~--~~~~~~ela~~l~i---s~stvs~~L~~L~~~Glv~~~~ 73 (106)
T 1r1u_A 22 ALGDYNRIRIMELLSV--SEASVGHISHQLNL---SQSNVSHQLKLLKSVHLVKAKR 73 (106)
T ss_dssp HTCSHHHHHHHHHHHH--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 3444456667777775 78999999999999 8899999999999999999875
|
| >1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.012 Score=46.20 Aligned_cols=67 Identities=12% Similarity=0.193 Sum_probs=49.5
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.++..|... +++|..+||+.+++ +...+.+.++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 39 ~~~iL~~l~~~-~~~t~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 39 QLFVLASLKKH-GSLKVSEIAERMEV---KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHH
Confidence 34567777654 68999999999999 889999999999999999987521111012467777666443
|
| >3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0063 Score=47.75 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=47.5
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|...++++|..+||+.+++ ++..+.++++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 40 ~q~~vL~~l~~~~~~~t~~eLa~~l~i---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 108 (150)
T 3fm5_A 40 RSYSVLVLACEQAEGVNQRGVAATMGL---DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLR 108 (150)
T ss_dssp HHHHHHHHHHHSTTCCCSHHHHHHHTC---CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHH
Confidence 456677777654457899999999999 899999999999999999987521100001266777666444
|
| >2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.001 Score=49.42 Aligned_cols=52 Identities=13% Similarity=0.270 Sum_probs=43.4
Q ss_pred HHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 26 ALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 26 ~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+|..-.++.|+..|.. ++.|+.|||+.+|+ ++..+.+.|+.|...|+|.+..
T Consensus 21 al~~~~r~~IL~~L~~--~~~s~~eLa~~lgi---s~stvs~~L~~L~~~GlV~~~~ 72 (108)
T 2kko_A 21 ALANGRRLQILDLLAQ--GERAVEAIATATGM---NLTTASANLQALKSGGLVEARR 72 (108)
T ss_dssp HHTTSTTHHHHHHHTT--CCEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HhCCHHHHHHHHHHHc--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 3334445667777765 79999999999999 8899999999999999998765
|
| >1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0048 Score=44.63 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=47.4
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++..+.. + ++..+||..+|+ +++.+++.++.|...|++++.. +.|.+|+.+..+.
T Consensus 13 IL~~i~~--~-~~~t~La~~~~l---s~~~~~~~l~~L~~~GLI~~~~-------~~~~LT~kG~~~l 67 (95)
T 1r7j_A 13 ILEACKS--G-SPKTRIMYGANL---SYALTGRYIKMLMDLEIIRQEG-------KQYMLTKKGEELL 67 (95)
T ss_dssp HHHHHTT--C-BCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET-------TEEEECHHHHHHH
T ss_pred HHHHHHc--C-CCHHHHHHHhCc---CHHHHHHHHHHHHHCCCeEEEC-------CeeEEChhHHHHH
Confidence 4445553 5 899999999999 8999999999999999999996 6799999998555
|
| >2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.003 Score=54.84 Aligned_cols=58 Identities=10% Similarity=0.209 Sum_probs=47.7
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
+.|++.|...++++|+.|||+.+|+ +...+.|+|+.|+..||+.++. .++|++++...
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl---~kstv~r~l~tL~~~G~v~~~~------~~~Y~lg~~~~ 83 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKL---PKTTVVRLVATMCARSVLTSRA------DGSYSLGPEML 83 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEECT------TSCEEECHHHH
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC------CCeEEecHHHH
Confidence 4456666532368999999999999 8899999999999999999986 35899887543
|
| >2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0052 Score=42.88 Aligned_cols=44 Identities=9% Similarity=0.152 Sum_probs=38.5
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeec
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVH 81 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 81 (350)
.|++.|... +++|..|||+.+|+ +...+++.|+.|...|++.+.
T Consensus 4 ~Il~~L~~~-~~~s~~eLa~~lgv---s~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 4 EILEFLNRH-NGGKTAEIAEALAV---TDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHS-CCCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEe
Confidence 466677654 68999999999999 889999999999999999964
|
| >2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0037 Score=54.16 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=49.8
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+.|++.|...++++|+.|||+.+|+ +...+.|+|+.|+..||+.+++ ++|++++....+.
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl---~~stv~r~l~~L~~~G~v~~~~-------~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGL---SRPAVRRILLTLQKLGYVAGSG-------GRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET-------TEEEECGGGHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeCC-------CEEEEcHHHHHHH
Confidence 3566677543368999999999999 8899999999999999999974 8999998765444
|
| >2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.016 Score=46.47 Aligned_cols=69 Identities=20% Similarity=0.261 Sum_probs=51.4
Q ss_pred HHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 30 AVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 30 ~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
..++.++..|... +++|..+||+.+++ +...+.+.++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 45 ~~~~~iL~~L~~~-~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 113 (168)
T 2nyx_A 45 IPQFRTLVILSNH-GPINLATLATLLGV---QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVV 113 (168)
T ss_dssp HHHHHHHHHHHHH-CSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 3456677788664 69999999999999 889999999999999999986421111012377887776444
|
| >3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0031 Score=49.94 Aligned_cols=69 Identities=14% Similarity=0.249 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 23 DSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 23 ~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
..++|.--.++.|+..|.. +++|+.|||+.+|+ +...+.+.|+.|...|+|.+.... ....|++|+...
T Consensus 51 ~l~aL~~p~R~~IL~~L~~--~~~t~~eLa~~lgl---s~stvs~hL~~L~~aGlV~~~~~G---r~~~y~lt~~~~ 119 (151)
T 3f6v_A 51 QLEVAAEPTRRRLVQLLTS--GEQTVNNLAAHFPA---SRSAISQHLRVLTEAGLVTPRKDG---RFRYYRLDPQGL 119 (151)
T ss_dssp HHHHHTSHHHHHHHHHGGG--CCEEHHHHHTTSSS---CHHHHHHHHHHHHHTTSEEEEEET---TEEEEEECHHHH
T ss_pred HHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEecC---CEEEEEEChHHH
Confidence 3566667788999999985 79999999999999 889999999999999999987510 012577776543
|
| >3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0059 Score=47.57 Aligned_cols=68 Identities=9% Similarity=0.124 Sum_probs=51.7
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 32 ~q~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 32 NLFAVLYTLATE-GSRTQKHIGEKWSL---PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHH
Confidence 456777888654 68999999999999 889999999999999999986521111112478888776543
|
| >3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0082 Score=46.52 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=50.1
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|++.....+.-.-.+.+|+.+..+.
T Consensus 37 ~q~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 37 TGYIVLMAIEND-EKLNIKKLGERVFL---DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIK 104 (140)
T ss_dssp HHHHHHHHSCTT-CEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHH
Confidence 446667777654 79999999999999 899999999999999999987521110012477887776544
|
| >1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.005 Score=47.94 Aligned_cols=50 Identities=8% Similarity=0.062 Sum_probs=44.8
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+++|..+||+.+++ ++..+.+.|+.|...|+|.+.. ...|.+|+.+..+.
T Consensus 21 ~~~~~~ela~~l~v---s~~tvs~~l~~Le~~Glv~r~~------~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 21 GYARVSDIAEALAV---HPSSVTKMVQKLDKDEYLIYEK------YRGLVLTSKGKKIG 70 (142)
T ss_dssp SSCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEET------TTEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEee------CceEEEchhHHHHH
Confidence 68999999999999 8899999999999999999986 47899999876544
|
| >3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0048 Score=46.04 Aligned_cols=75 Identities=15% Similarity=0.201 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCC--HHHHHhhc-CCCCCCcccHHHHHHHhhcCCceeecccCCC
Q 018775 10 GQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPIT--LPQLASRI-DSSCPDIPYLARLMRMLVRKGIFAVHQSSDG 86 (350)
Q Consensus 10 ~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t--~~ela~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~ 86 (350)
+...+++.+.+.|...+|. .|.. ++.+ +.||++.+ |+ ++..+.+.|+.|...|+|++...
T Consensus 16 ~~~~~l~~l~~~wrl~IL~---------~L~~--g~~~~~~~eL~~~l~gi---s~~~ls~~L~~Le~~GlV~r~~~--- 78 (111)
T 3df8_A 16 PSESVLHLLGKKYTMLIIS---------VLGN--GSTRQNFNDIRSSIPGI---SSTILSRRIKDLIDSGLVERRSG--- 78 (111)
T ss_dssp TTSSTHHHHHSTTHHHHHH---------HHTS--SSSCBCHHHHHHTSTTC---CHHHHHHHHHHHHHTTSEEEEES---
T ss_pred HHHHHHHHHcCccHHHHHH---------HHhc--CCCCCCHHHHHHHccCC---CHHHHHHHHHHHHHCCCEEEeec---
Confidence 4445566666666555554 4443 6888 99999999 99 88999999999999999999841
Q ss_pred CCCCeEecChhchhhh
Q 018775 87 GDETLYKMTHISKWLL 102 (350)
Q Consensus 87 ~~~~~~~~t~~s~~l~ 102 (350)
....|++|+.+..+.
T Consensus 79 -r~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 79 -QITTYALTEKGMNVR 93 (111)
T ss_dssp -SSEEEEECHHHHHHH
T ss_pred -CcEEEEECccHHHHH
Confidence 125799998887554
|
| >3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0035 Score=47.30 Aligned_cols=67 Identities=16% Similarity=0.256 Sum_probs=52.2
Q ss_pred HHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhc
Q 018775 24 SMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHIS 98 (350)
Q Consensus 24 ~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s 98 (350)
+.+|.--.++.|+..|.+ +|.++.|||+.+|+ +...+.+.|+.|...|+|...... ....|++++..
T Consensus 12 ~~al~~~~R~~Il~~L~~--~~~~~~eLa~~l~i---s~~tvs~hL~~L~~~GlV~~~~~g---r~~~y~l~~~~ 78 (118)
T 3f6o_A 12 FQALADPTRRAVLGRLSR--GPATVSELAKPFDM---ALPSFMKHIHFLEDSGWIRTHKQG---RVRTCAIEKEP 78 (118)
T ss_dssp HHHHTSHHHHHHHHHHHT--CCEEHHHHHTTCCS---CHHHHHHHHHHHHHTTSEEEEEET---TEEEEEECSHH
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHhCc---CHHHHHHHHHHHHHCCCeEEEecC---CEEEEEECHHH
Confidence 345555677788888875 79999999999999 889999999999999999876520 01357777644
|
| >2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0095 Score=45.63 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=38.8
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHI 97 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~ 97 (350)
++.|.++||+++++ ++..++++|+.|...|++....+ ..|.|.++..
T Consensus 25 ~~~s~~ela~~~~i---~~~~v~~il~~L~~~Glv~~~~g----~~ggy~L~~~ 71 (129)
T 2y75_A 25 GPTSLKSIAQTNNL---SEHYLEQLVSPLRNAGLVKSIRG----AYGGYVLGSE 71 (129)
T ss_dssp CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEC--------CCEEESSC
T ss_pred CcCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEecCC----CCCceEeCCC
Confidence 68999999999999 89999999999999999998741 1367887653
|
| >2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.022 Score=44.21 Aligned_cols=69 Identities=22% Similarity=0.259 Sum_probs=51.0
Q ss_pred HHhcChhhhhhh-CCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 30 AVELRLADIMHS-HGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 30 ~~~lglfd~L~~-~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
..++.++..|.. . +++|..+||+.+++ +...+.+.++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 35 ~~~~~iL~~l~~~~-~~~~~~~la~~l~i---~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (147)
T 2hr3_A 35 FSQLVVLGAIDRLG-GDVTPSELAAAERM---RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL 104 (147)
T ss_dssp HHHHHHHHHHHHTT-SCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHH
Confidence 455677888876 4 69999999999999 889999999999999999987421111112377887776444
|
| >2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0039 Score=54.34 Aligned_cols=57 Identities=19% Similarity=0.183 Sum_probs=47.9
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
+.|++.|...++++|+.|||+++|+ +...+.|+|+.|+..||+.+++ ++|++++...
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl---~~stv~r~l~tL~~~G~v~~~~-------~~Y~Lg~~~~ 80 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDL---TRATARRFLLTLVELGYVATDG-------SAFWLTPRVL 80 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEESS-------SEEEECGGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEecC-------CEEEEcHHHH
Confidence 4566777543368999999999999 8899999999999999999974 8999987643
|
| >1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0052 Score=45.89 Aligned_cols=79 Identities=10% Similarity=0.019 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhc-CCCCCCcccHHHHHHHhhcCCceeecccCCCCC
Q 018775 10 GQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRI-DSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGD 88 (350)
Q Consensus 10 ~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~ 88 (350)
+...+++++.+.+...+| ..|.. ++.+..|||+.+ ++ +...+.+.|+.|+..|+|.+.....+..
T Consensus 11 ~~~~~l~~l~~~~~~~IL---------~~L~~--~~~~~~eLa~~l~~i---s~~tvs~~L~~Le~~GlI~r~~~~~d~r 76 (112)
T 1z7u_A 11 SINLALSTINGKWKLSLM---------DELFQ--GTKRNGELMRALDGI---TQRVLTDRLREMEKDGLVHRESFNELPP 76 (112)
T ss_dssp HHHHHHHTTCSTTHHHHH---------HHHHH--SCBCHHHHHHHSTTC---CHHHHHHHHHHHHHHTSEEEEEECCSSC
T ss_pred CHHHHHHHHcCccHHHHH---------HHHHh--CCCCHHHHHHHhccC---CHHHHHHHHHHHHHCCCEEEeecCCCCC
Confidence 344455555455444443 34444 689999999999 99 8999999999999999999875211111
Q ss_pred CCeEecChhchhhh
Q 018775 89 ETLYKMTHISKWLL 102 (350)
Q Consensus 89 ~~~~~~t~~s~~l~ 102 (350)
.-.|++|+.+..+.
T Consensus 77 ~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 77 RVEYTLTPEGYALY 90 (112)
T ss_dssp EEEEEECHHHHHHH
T ss_pred eEEEEECHhHHHHH
Confidence 12488898876443
|
| >2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.059 Score=42.13 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=50.6
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceee--cccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAV--HQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~--~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ +...+.+.++.|+..|+|.+ .....+...-.+.+|+.+..+.
T Consensus 42 ~~~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 42 QQLAMINVIYST-PGISVADLTKRLII---TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHH
Confidence 456677788765 68999999999999 88999999999999999999 4311111112578888776444
|
| >3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.038 Score=43.84 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=51.5
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 47 ~q~~iL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 114 (162)
T 3k0l_A 47 PQFTALSVLAAK-PNLSNAKLAERSFI---KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKL 114 (162)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTS---CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHH
Confidence 345678888775 69999999999999 889999999999999999987521110012477887776444
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.01 Score=53.78 Aligned_cols=83 Identities=10% Similarity=0.004 Sum_probs=55.8
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC---CCCCeEEEeccCCC-C-C----CC-----------
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP---VCEGIFHVGGDMFD-A-I----PK----------- 244 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~~~~i~~~~~d~~~-~-~----p~----------- 244 (350)
++..|||||.|.|.++..|+++....+++++++ +..+...+ ..++++++.+|+++ + + .+
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~~~~~~l~~~~~l~~~~~~~~ 137 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDWSTYSNLIDEERIFVPEVQSS 137 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCHHHHHHHTTTTCSSCCCCCCT
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccchhhHHHhhccccccccccccc
Confidence 358999999999999999998744346777776 55444332 25789999999976 3 1 11
Q ss_pred ----ccEEEecchhccCChHHHHHHHHH
Q 018775 245 ----ADAVFMKWILHDWDDEACVKILKN 268 (350)
Q Consensus 245 ----~D~i~~~~vlh~~~~~~~~~~L~~ 268 (350)
-.+.+..|.-++.+.+-..++|..
T Consensus 138 ~~~~~~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 138 DHINDKFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp TSEEEEEEEEEECCSTTHHHHHHHHHHH
T ss_pred ccCCCceEEEEECCCchHHHHHHHHHHh
Confidence 024566676666555444455554
|
| >2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.05 Score=42.07 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=50.0
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|. . +++|..+||+.+++ +...+.+.|+.|+..|+|.+.....+.-...+.+|+.+..+.
T Consensus 38 ~~~~iL~~l~-~-~~~~~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 38 LDFLVLRATS-D-GPKTMAYLANRYFV---TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF 104 (146)
T ss_dssp HHHHHHHHHT-T-SCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHh-c-CCcCHHHHHHHhCC---CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHH
Confidence 4566777777 4 79999999999999 889999999999999999987421111012367777766443
|
| >1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0065 Score=46.16 Aligned_cols=52 Identities=19% Similarity=0.269 Sum_probs=44.4
Q ss_pred HHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 26 ALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 26 ~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+|.--.++.++..|.+ ++.++.+||+.+|+ +...+.+.|+.|...|++....
T Consensus 42 aL~~~~rl~IL~~L~~--~~~s~~ela~~lgi---s~stvs~~L~~Le~~Glv~~~~ 93 (122)
T 1r1t_A 42 VLADPNRLRLLSLLAR--SELCVGDLAQAIGV---SESAVSHQLRSLRNLRLVSYRK 93 (122)
T ss_dssp HHCCHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HhCCHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 3444456778888875 69999999999999 8899999999999999999765
|
| >3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.016 Score=46.31 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=41.1
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHIS 98 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s 98 (350)
+++|.++||+++++ ++..++++|..|...||++-... ..|.|+++...
T Consensus 27 ~~~s~~~IA~~~~i---s~~~l~kil~~L~~aGlv~s~rG----~~GGy~Lar~p 74 (162)
T 3k69_A 27 SKVASRELAQSLHL---NPVMIRNILSVLHKHGYLTGTVG----KNGGYQLDLAL 74 (162)
T ss_dssp SCBCHHHHHHHHTS---CGGGTHHHHHHHHHTTSSEEECS----TTCEEECCSCG
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeecC----CCCCeEecCCh
Confidence 68999999999999 89999999999999999987752 24679877543
|
| >3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.025 Score=44.81 Aligned_cols=68 Identities=24% Similarity=0.181 Sum_probs=50.5
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ +...+.+.++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 54 ~q~~vL~~l~~~-~~~t~~eLa~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 121 (161)
T 3e6m_A 54 PKLRLLSSLSAY-GELTVGQLATLGVM---EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKL 121 (161)
T ss_dssp HHHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHH
Confidence 345577777654 69999999999999 889999999999999999987521111112477887776444
|
| >2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.006 Score=41.24 Aligned_cols=56 Identities=16% Similarity=0.306 Sum_probs=49.1
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecC
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMT 95 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t 95 (350)
.+-.|++.|.++|.|++..+||+.+|+ +..-+.+.|..|-..|.|.... .-+|.++
T Consensus 20 ~eekVLe~LkeaG~PlkageIae~~Gv---dKKeVdKaik~LKkEgkI~SPk------RCyw~~~ 75 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPVKLAQLVKECQA---PKRELNQVLYRMKKELKVSLTS------PATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHTSCEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE------TTEEEES
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHcCCccCCC------CceeeCC
Confidence 355678888887799999999999999 8899999999999999999987 5678765
|
| >1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0073 Score=46.51 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhc-CCCCCCcccHHHHHHHhhcCCceeecccCCCCC
Q 018775 10 GQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRI-DSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGD 88 (350)
Q Consensus 10 ~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~ 88 (350)
+...+++++.+.|...+|. .|.. ++.+..||++.+ |+ ++..+.+.|+.|+..|+|.+.....+..
T Consensus 24 ~~~~~l~~l~~~w~l~IL~---------~L~~--g~~~~~eLa~~l~gi---s~~tls~~L~~Le~~GlV~r~~~~~d~r 89 (131)
T 1yyv_A 24 PSREVLKHVTSRWGVLILV---------ALRD--GTHRFSDLRRXMGGV---SEXMLAQSLQALEQDGFLNRVSYPVVPP 89 (131)
T ss_dssp THHHHHHHHHSHHHHHHHH---------HGGG--CCEEHHHHHHHSTTC---CHHHHHHHHHHHHHHTCEEEEEECSSSC
T ss_pred CHHHHHHHHcCCcHHHHHH---------HHHc--CCCCHHHHHHHhccC---CHHHHHHHHHHHHHCCcEEEEecCCCCC
Confidence 4455556555555544443 3443 799999999999 79 8999999999999999999875211111
Q ss_pred CCeEecChhchhhh
Q 018775 89 ETLYKMTHISKWLL 102 (350)
Q Consensus 89 ~~~~~~t~~s~~l~ 102 (350)
.-.|++|+.+..+.
T Consensus 90 ~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 90 HVEYSLTPLGEQVS 103 (131)
T ss_dssp EEEEEECHHHHHHH
T ss_pred eEEEEECccHHHHH
Confidence 12699998876554
|
| >2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0063 Score=44.97 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcC-CCCCCcccHHHHHHHhhcCCceeecccCCCC
Q 018775 9 RGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRID-SSCPDIPYLARLMRMLVRKGIFAVHQSSDGG 87 (350)
Q Consensus 9 ~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~-~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~ 87 (350)
-+...+++++.+.+...+|. .|.. ++.+..||++.++ + ++..+.+.|+.|+..|+|++.....+.
T Consensus 13 c~~~~~l~~l~~~~~~~IL~---------~L~~--~~~~~~eL~~~l~gi---s~~~ls~~L~~Le~~GlV~r~~~~~d~ 78 (107)
T 2fsw_A 13 CPVRKSMQIFAGKWTLLIIF---------QINR--RIIRYGELKRAIPGI---SEKMLIDELKFLCGKGLIKKKQYPEVP 78 (107)
T ss_dssp CHHHHHHHHHTSSSHHHHHH---------HHTT--SCEEHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred CCHHHHHHHHcCccHHHHHH---------HHHh--CCcCHHHHHHHcccC---CHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 34555666665555554443 3433 6999999999995 9 889999999999999999987521111
Q ss_pred CCCeEecChhchhhh
Q 018775 88 DETLYKMTHISKWLL 102 (350)
Q Consensus 88 ~~~~~~~t~~s~~l~ 102 (350)
..-.|.+|+.+..+.
T Consensus 79 r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 79 PRVEYSLTPLGEKVL 93 (107)
T ss_dssp CEEEEEECHHHHTTH
T ss_pred CeeEEEECccHHHHH
Confidence 113589998876443
|
| >3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0091 Score=46.34 Aligned_cols=69 Identities=17% Similarity=0.290 Sum_probs=50.9
Q ss_pred HHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 30 AVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 30 ~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
..++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|++.....+.-.-.+.+|+.+..+.
T Consensus 37 ~~~~~iL~~l~~~-~~~t~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 105 (143)
T 3oop_A 37 PEQWSVLEGIEAN-EPISQKEIALWTKK---DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKET 105 (143)
T ss_dssp HHHHHHHHHHHHH-SSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHH
Confidence 3456677777654 69999999999999 889999999999999999987521111112477887776444
|
| >2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0068 Score=51.99 Aligned_cols=63 Identities=14% Similarity=0.243 Sum_probs=51.7
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..|||+.+|+ +...+.|.|+.|...|++.+.+. ...|++|+.+..+.
T Consensus 153 ~~~~IL~~L~~~-~~~s~~eLA~~lgl---sksTv~r~L~~Le~~GlV~r~~r-----~~~~~LT~~G~~l~ 215 (244)
T 2wte_A 153 EEMKLLNVLYET-KGTGITELAKMLDK---SEKTLINKIAELKKFGILTQKGK-----DRKVELNELGLNVI 215 (244)
T ss_dssp HHHHHHHHHHHH-TCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEETT-----TTEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeCC-----ccEEEECHHHHHHH
Confidence 345566666443 69999999999999 89999999999999999999753 36899999887554
|
| >4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.013 Score=45.95 Aligned_cols=69 Identities=12% Similarity=0.158 Sum_probs=49.5
Q ss_pred HHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 30 AVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 30 ~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
..++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 41 ~~q~~iL~~l~~~-~~~~~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 41 YSQYLVMLTLWEE-NPQTLNSIGRHLDL---SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHHS-SSEEHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHH
Confidence 3456777888765 79999999999999 899999999999999999987421110012477777766443
|
| >3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.021 Score=44.30 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=50.9
Q ss_pred HHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 30 AVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 30 ~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
..++.++..|... ++ |..+||+.+++ ++..+.+.++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 37 ~~~~~iL~~l~~~-~~-~~~~la~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 37 YLDFSILKATSEE-PR-SMVYLANRYFV---TQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHHHHHHS-CE-EHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHC-CC-CHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHH
Confidence 3456788888775 45 99999999999 899999999999999999987521000001478888776444
|
| >3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.012 Score=46.56 Aligned_cols=66 Identities=17% Similarity=0.102 Sum_probs=49.0
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 53 ~~vL~~l~~~-~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 53 FPFLMRLYRE-DGINQESLSDYLKI---DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLE 118 (159)
T ss_dssp HHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHH
Confidence 5567777665 69999999999999 889999999999999999987521110012467777766444
|
| >2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.012 Score=46.23 Aligned_cols=55 Identities=18% Similarity=0.308 Sum_probs=44.4
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.+..||++.+++ +...+.+.|+.|+..|+|++.....+. .-.|++|+.+..+.
T Consensus 36 g~~~~~eLa~~lgi---s~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 36 GLTRFGEFQKSLGL---AKNILAARLRNLVEHGVMVAVPAESGS-HQEYRLTDKGRALF 90 (146)
T ss_dssp TCCSHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEECSSSS-CEEEEECHHHHTTH
T ss_pred CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEEecCCCC-eEEEEECchHHHHH
Confidence 69999999999999 889999999999999999987532111 23688898776443
|
| >2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.026 Score=43.55 Aligned_cols=68 Identities=13% Similarity=0.246 Sum_probs=50.8
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ +...+.+.|+.|+..|++.+.....+.-.-.+.+|+.+..+.
T Consensus 38 ~~~~iL~~l~~~-~~~~~~ela~~l~~---~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 105 (142)
T 2bv6_A 38 PQFLVLTILWDE-SPVNVKKVVTELAL---DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIR 105 (142)
T ss_dssp HHHHHHHHHHHS-SEEEHHHHHHHTTC---CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHH
Confidence 456677788765 68999999999999 788999999999999999987521111012467777766443
|
| >3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.012 Score=46.89 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=40.1
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
+++|.++||+++++ ++..++++|..|...|+|....+ .+|.|+++.
T Consensus 43 ~~~s~~eIA~~~~i---~~~~l~kil~~L~~aGlv~s~rG----~~GGy~Lar 88 (159)
T 3lwf_A 43 GPISLRSIAQDKNL---SEHYLEQLIGPLRNAGIVKSIRG----AHGGYVLNG 88 (159)
T ss_dssp CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECS----TTCEEEECS
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCeEEEecC----CCCceEecC
Confidence 68999999999999 89999999999999999998762 247788664
|
| >2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0097 Score=45.83 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=50.5
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ +...+.+.|+.|+..|++.+.....+.....+.+|+.+..+.
T Consensus 39 ~~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 39 TQWAALVRLGET-GPCPQNQLGRLTAM---DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHHHHHHHHH-SSBCHHHHHHHTTC---CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHH
Confidence 456678888654 69999999999999 889999999999999999986421000011377787776443
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.045 Score=52.53 Aligned_cols=110 Identities=14% Similarity=0.125 Sum_probs=67.1
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-------------CCCcEEEecc-hhHhhhCCC------CCCeE
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-------------PHIKGINFDL-PHVVATAPV------CEGIF 232 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~------~~~i~ 232 (350)
+..+++.+. ...+.+|+|-.||+|.++....+.. ....+.++|+ +.+...++- .+.-.
T Consensus 206 v~lmv~l~~--p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~ 283 (530)
T 3ufb_A 206 VRFMVEVMD--PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPR 283 (530)
T ss_dssp HHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCE
T ss_pred HHHHHHhhc--cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcccc
Confidence 344445555 4567799999999999988765432 1356889998 766665542 23345
Q ss_pred EEeccCCC-CC------CCccEEEecchh--cc-------CC-----hHHHHHHHHHHHhhCCC------CCceEEEEe
Q 018775 233 HVGGDMFD-AI------PKADAVFMKWIL--HD-------WD-----DEACVKILKNCRQAIPD------KSGKLVLVE 284 (350)
Q Consensus 233 ~~~~d~~~-~~------p~~D~i~~~~vl--h~-------~~-----~~~~~~~L~~~~~~L~~------pgG~lli~e 284 (350)
+..+|.+. +. ..||+|+++-=+ .. ++ .+....++.++.+.|+. |||++.++-
T Consensus 284 I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVl 362 (530)
T 3ufb_A 284 IDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVV 362 (530)
T ss_dssp EECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEE
T ss_pred ccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEe
Confidence 67788775 32 139999985222 11 11 11123456666666641 689988754
|
| >3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.013 Score=45.01 Aligned_cols=68 Identities=12% Similarity=0.250 Sum_probs=50.5
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ ++..+.+.|+.|+..|++.+.....+...-.+.+|+.+..+.
T Consensus 34 ~~~~iL~~l~~~-~~~~~~ela~~l~~---~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 34 VQFGVIQVLAKS-GKVSMSKLIENMGC---VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHHHHHHHHS-CSEEHHHHHHHCSS---CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHHCC---ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHH
Confidence 456677777765 68999999999999 889999999999999999986421111112367777776443
|
| >2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0053 Score=43.00 Aligned_cols=49 Identities=14% Similarity=0.359 Sum_probs=42.1
Q ss_pred HhcChhhhhhhCC-CCCCHHHHHhhc-----CCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHG-SPITLPQLASRI-----DSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~-~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..|++.|...+ ++.|++||++.+ ++ +..-++|.|+.|+..|+|.+..
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i---s~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI---GLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCeEEEe
Confidence 4456888887543 589999999999 88 8899999999999999999875
|
| >3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.033 Score=43.73 Aligned_cols=68 Identities=12% Similarity=0.174 Sum_probs=50.2
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ +...+.+.++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 44 ~~~~iL~~l~~~-~~~t~~ela~~l~i---~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 111 (155)
T 3cdh_A 44 PEWRVLACLVDN-DAMMITRLAKLSLM---EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALA 111 (155)
T ss_dssp HHHHHHHHHSSC-SCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHH
Confidence 356677778765 69999999999999 889999999999999999987421110012477887776444
|
| >3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.013 Score=45.75 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=40.7
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHIS 98 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s 98 (350)
+++|.++||+++++ ++..++++|..|...|+|....+ .+|.|+++...
T Consensus 27 ~~~s~~~IA~~~~i---~~~~l~kil~~L~~aGlv~s~rG----~~GGy~Lar~p 74 (143)
T 3t8r_A 27 GCISLKSIAEENNL---SDLYLEQLVGPLRNAGLIRSVRG----AKGGYQLRVPA 74 (143)
T ss_dssp CCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECSS----SSSEEEESSCG
T ss_pred CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCEEEecCC----CCCCeeecCCc
Confidence 58999999999999 89999999999999999997652 24788876533
|
| >1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.012 Score=42.62 Aligned_cols=64 Identities=14% Similarity=0.161 Sum_probs=48.7
Q ss_pred hcChhhhhhhCCCCCCHHHH----HhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 32 ELRLADIMHSHGSPITLPQL----ASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~el----a~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.++..|... ++.|..+| |+.+++ +...+.+.|+.|+..|++.+.... ....|.+|+.+..+.
T Consensus 10 q~~iL~~l~~~-~~~~~~el~~~la~~l~i---s~~tvs~~l~~Le~~gli~r~~~~---r~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 10 EAIVLAYLYDN-EGIATYDLYKKVNAEFPM---STATFYDAKKFLIQEGFVKERQER---GEKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHHHHTTC-TTCBHHHHHHHHHTTSCC---CHHHHHHHHHHHHHTTSEEEEEET---TEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCEEEEecC---CceEEEECHHHHHHH
Confidence 34456666554 68999999 999999 889999999999999999986410 024577887776444
|
| >3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.053 Score=42.30 Aligned_cols=66 Identities=12% Similarity=0.249 Sum_probs=46.1
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc--cCCCCCCCeEecChhchhhh
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ--SSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~--~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.++..| .. +++|..+||+.+++ ++..+.+.++.|+..|+|.+.. ...+.-.-.+.+|+.+..+.
T Consensus 40 q~~iL~~l-~~-~~~t~~eLa~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 40 QSHVLNML-SI-EALTVGQITEKQGV---NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHHHHH-HH-SCBCHHHHHHHHCS---CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred HHHHHHHH-Hc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHH
Confidence 45577888 43 79999999999999 8899999999999999999731 10000012356676665443
|
| >2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.05 Score=42.32 Aligned_cols=67 Identities=9% Similarity=0.160 Sum_probs=49.5
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.++..|... +++|..+||+.+++ +...+.+.|+.|+..|++.+.....+.-...+.+|+.+..+.
T Consensus 44 ~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 44 QFVALQWLLEE-GDLTVGELSNKMYL---ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHH
Confidence 45567777654 69999999999999 889999999999999999986421110012367777766443
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.013 Score=51.80 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=38.6
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV 227 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 227 (350)
...+++.+. .++..|||++||+|.++..+++. +.+++++|+ +.+++.+++
T Consensus 225 ~~~~i~~~~---~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 225 AERLVRMFS---FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp HHHHHHHHC---CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHhC---CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 344454443 46789999999999999998875 468999999 888877653
|
| >2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.014 Score=45.06 Aligned_cols=48 Identities=10% Similarity=0.052 Sum_probs=43.2
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
++.|..+||+.+++ +...+.+.|+.|+..|+|.+.. ..|.+|+.+..+
T Consensus 30 ~~~s~~ela~~l~i---s~~tv~~~l~~Le~~Gli~r~~-------~~~~Lt~~g~~~ 77 (139)
T 2x4h_A 30 EGAKINRIAKDLKI---APSSVFEEVSHLEEKGLVKKKE-------DGVWITNNGTRS 77 (139)
T ss_dssp SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET-------TEEEECHHHHHH
T ss_pred CCcCHHHHHHHhCC---ChHHHHHHHHHHHHCCCEEecC-------CeEEEChhHHHH
Confidence 68999999999999 8899999999999999999985 678999877644
|
| >3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.012 Score=45.97 Aligned_cols=69 Identities=17% Similarity=0.257 Sum_probs=49.0
Q ss_pred HHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 30 AVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 30 ~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
..++.++..|... +++|..+||+.+++ ++..+.+.++.|+..|+|.+.....+.-...+.+|+.+..+.
T Consensus 40 ~~~~~iL~~l~~~-~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~ 108 (148)
T 3nrv_A 40 MTEWRIISVLSSA-SDCSVQKISDILGL---DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
T ss_dssp HHHHHHHHHHHHS-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHH
Confidence 3456677778765 69999999999999 889999999999999999987421111013467777665443
|
| >3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0093 Score=45.32 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=41.3
Q ss_pred HhcChhhhhhhCCCC-CCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSP-ITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~-~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..++..|...++| +|+.|||+.+++ +...+.|.|+.|...|+|.+..
T Consensus 27 ~e~~il~~L~~~~~~~~t~~eLa~~l~~---s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 27 ADLNVMKSFLNEPDRWIDTDALSKSLKL---DVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp HHHHHHHHHHHSTTCCEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeeC
Confidence 355677777654456 899999999999 8999999999999999999864
|
| >3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.035 Score=43.78 Aligned_cols=69 Identities=12% Similarity=0.166 Sum_probs=48.7
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|...++++|..+||+.+++ +...+.++++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 48 ~~~~iL~~L~~~~~~~~~~ela~~l~i---~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 48 AKFDAMAQLARNPDGLSMGKLSGALKV---TNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHCSS---CCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHH
Confidence 456688888322379999999999999 889999999999999999997521110012367777766443
|
| >2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.037 Score=43.73 Aligned_cols=68 Identities=13% Similarity=0.227 Sum_probs=48.3
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ +...+.+.|+.|+..|+|.+.....+.-...+.+|+.+..+.
T Consensus 50 ~~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 50 PEWRVITILALY-PGSSASEVSDRTAM---DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHHHHHHHS-TTCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHH
Confidence 356677888764 69999999999999 889999999999999999986421110012466777666443
|
| >3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.098 Score=40.67 Aligned_cols=68 Identities=15% Similarity=0.275 Sum_probs=50.9
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ +...+.+.|+.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 41 ~~~~iL~~l~~~-~~~t~~ela~~l~~---~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 41 GQRAILEGLSLT-PGATAPQLGAALQM---KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHH
Confidence 345677778765 69999999999999 889999999999999999997521111112567777766443
|
| >3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.014 Score=44.96 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=50.5
Q ss_pred HhcChhhhhhhCC-CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHG-SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|...+ +++|..+||+.+++ ++..+.+.++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~---~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~ 101 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKALQR---TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLV 101 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHhCC---CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHH
Confidence 4566777776642 49999999999999 889999999999999999987421111012467777776444
|
| >1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55 | Back alignment and structure |
|---|
Probab=95.12 E-value=0.021 Score=44.88 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=45.3
Q ss_pred HHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChh
Q 018775 25 MALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHI 97 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~ 97 (350)
.+|++.+.+... .. +++|.++||+++++ ++..++++|..|...|+|....+ .|.|.++..
T Consensus 15 yAl~~L~~La~~---~~--~~~~~~~iA~~~~i---~~~~l~kil~~L~~~Glv~s~rG-----~GGy~L~~~ 74 (149)
T 1ylf_A 15 IAVHILSILKNN---PS--SLCTSDYMAESVNT---NPVVIRKIMSYLKQAGFVYVNRG-----PGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHHHHS---CG--GGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC--------CCEEESSC
T ss_pred HHHHHHHHHHhC---CC--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEccC-----CCceEeCCC
Confidence 455555555432 22 68999999999999 89999999999999999998752 367887654
|
| >3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.027 Score=44.64 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=50.7
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ +...+.+.|+.|+..|+|.+.....+.-...+.+|+.+..+.
T Consensus 53 ~~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 53 AKMRALAILSAK-DGLPIGTLGIFAVV---EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 456678888765 69999999999999 889999999999999999987421111112467777766443
|
| >2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.024 Score=43.94 Aligned_cols=66 Identities=18% Similarity=0.169 Sum_probs=48.4
Q ss_pred hcChhhhh-hhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 32 ELRLADIM-HSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 32 ~lglfd~L-~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
++.++..| ... +++|..+||+.+++ +...+.+.++.|+..|+|.+.....+.-.-.+.+|+.+..+
T Consensus 39 ~~~iL~~l~~~~-~~~t~~~la~~l~~---s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~ 105 (146)
T 2fbh_A 39 RWLVLLHLARHR-DSPTQRELAQSVGV---EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVL 105 (146)
T ss_dssp HHHHHHHHHHCS-SCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHH
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHhCC---ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHH
Confidence 45567777 443 79999999999999 88999999999999999998752111001236677666544
|
| >1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.015 Score=44.99 Aligned_cols=67 Identities=15% Similarity=0.098 Sum_probs=50.0
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.++..|... +++|..+||+.+++ +...+.+.++.|+..|++.+.....+...-.+.+|+.+..+.
T Consensus 31 ~~~iL~~l~~~-~~~t~~~la~~l~~---s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 31 QYLYLVRVCEN-PGIIQEKIAELIKV---DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-cCcCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHH
Confidence 45567777665 68999999999999 889999999999999999987521111112367787776443
|
| >1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.92 E-value=0.02 Score=44.00 Aligned_cols=67 Identities=19% Similarity=0.211 Sum_probs=49.5
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.++..|... ++.|..+||+.+++ +...+.+.++.|+..|++.+.....+.-.-.+.+|+.+..+.
T Consensus 36 ~~~iL~~l~~~-~~~~~~~la~~l~~---~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 102 (138)
T 1jgs_A 36 QFKVLCSIRCA-ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHHH-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHHCC---ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHH
Confidence 45566677654 68999999999999 889999999999999999986421111012377887776444
|
| >3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.91 E-value=0.019 Score=45.90 Aligned_cols=69 Identities=20% Similarity=0.213 Sum_probs=49.4
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|...++++|..+||+.+++ +...+.++++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 54 ~q~~vL~~L~~~~~~~t~~eLa~~l~i---~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 122 (166)
T 3deu_A 54 THWVTLHNIHQLPPDQSQIQLAKAIGI---EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI 122 (166)
T ss_dssp HHHHHHHHHHHSCSSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHH
Confidence 456677777653368999999999999 899999999999999999997521110012467777776444
|
| >3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.023 Score=44.06 Aligned_cols=67 Identities=15% Similarity=0.369 Sum_probs=46.6
Q ss_pred HHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 30 AVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 30 ~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
..++.++..|... ++|..+||+.+++ +...+.+.|+.|+..|+|.+.....+.-.-.+.+|+.+..+
T Consensus 38 ~~~~~iL~~l~~~--~~t~~eLa~~l~~---s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~ 104 (146)
T 3tgn_A 38 NTQEHILMLLSEE--SLTNSELARRLNV---SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPI 104 (146)
T ss_dssp HHHHHHHHHHTTC--CCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHH
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHH
Confidence 3556677788763 4999999999999 88999999999999999998752111101246666666533
|
| >2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.023 Score=44.66 Aligned_cols=68 Identities=12% Similarity=0.131 Sum_probs=50.5
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ +...+.+.++.|+..|+|.+.....+...-.+.+|+.+..+.
T Consensus 45 ~~~~iL~~l~~~-~~~t~~ela~~l~i---s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 45 TELYAFLYVALF-GPKKMKEIAEFLST---TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHH
Confidence 456677777654 68999999999999 889999999999999999986421111012467777766443
|
| >3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.79 E-value=0.03 Score=43.05 Aligned_cols=69 Identities=13% Similarity=0.154 Sum_probs=49.5
Q ss_pred HhcChhhhhhhCCC-CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGS-PITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~-~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|...++ ++|..+||+.+++ +...+.+.++.|+..|+|.+.....+.-...+.+|+.+..+.
T Consensus 35 ~~~~iL~~l~~~~~~~~~~~ela~~l~~---~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~ 104 (141)
T 3bro_A 35 TQMTIIDYLSRNKNKEVLQRDLESEFSI---KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE 104 (141)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCC---CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHH
Confidence 34556777766422 8999999999999 889999999999999999987521111012466777665443
|
| >2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.028 Score=44.36 Aligned_cols=55 Identities=15% Similarity=0.200 Sum_probs=45.8
Q ss_pred hhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 38 IMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 38 ~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.+... ++.|..+||+.+++ +...+.+.|+.|...|+|.+.. +..+.+|+.+..+.
T Consensus 48 ~l~~~-~~~~~~~la~~l~v---s~~tvs~~l~~Le~~Glv~r~~------~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 48 LIREV-GEARQVDMAARLGV---SQPTVAKMLKRLATMGLIEMIP------WRGVFLTAEGEKLA 102 (155)
T ss_dssp HHHHH-SCCCHHHHHHHHTS---CHHHHHHHHHHHHHTTCEEEET------TTEEEECHHHHHHH
T ss_pred HHHhC-CCcCHHHHHHHhCc---CHHHHHHHHHHHHHCCCEEEec------CCceEEChhHHHHH
Confidence 44432 68999999999999 8899999999999999999886 46788888776443
|
| >2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Probab=94.77 E-value=0.022 Score=40.95 Aligned_cols=63 Identities=16% Similarity=0.115 Sum_probs=45.0
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCccc-HHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPY-LARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~-l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++..|...+.++|..|||+.+++ ++.. +.+.++.|+..|+|..+..+ .....+.+|+.+..+.
T Consensus 20 ~L~~l~~~~~~~t~~eLa~~l~i---s~~t~vs~~l~~Le~~Glv~~~~~d--rR~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 20 TLLEFEKKGYEPSLAEIVKASGV---SEKTFFMGLKDRLIRAGLVKEETLS--YRVKTLKLTEKGRRLA 83 (95)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHCC---CHHHHHTTHHHHHHHTTSEEEEEEE--TTEEEEEECHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCC---CchHHHHHHHHHHHHCCCeecCCCC--CCeEEEEECHhHHHHH
Confidence 34444443238999999999999 8899 99999999999999954311 0012467787776443
|
| >1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55 | Back alignment and structure |
|---|
Probab=94.71 E-value=0.036 Score=43.31 Aligned_cols=46 Identities=9% Similarity=0.168 Sum_probs=39.0
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHIS 98 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s 98 (350)
++ |.++||+++++ ++..++++|..|...|||....+ .|.|+++...
T Consensus 23 ~~-s~~~IA~~~~i---~~~~l~kIl~~L~~aGlv~s~rG-----~GGy~Lar~p 68 (145)
T 1xd7_A 23 KT-SSEIIADSVNT---NPVVVRRMISLLKKADILTSRAG-----VPGASLKKDP 68 (145)
T ss_dssp CC-CHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECCSS-----SSSCEESSCG
T ss_pred CC-CHHHHHHHHCc---CHHHHHHHHHHHHHCCceEeecC-----CCCceecCCH
Confidence 35 99999999999 89999999999999999998762 3678876543
|
| >4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.039 Score=43.37 Aligned_cols=68 Identities=22% Similarity=0.215 Sum_probs=48.9
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.++-.|...+++.+..+||+.+++ ++..+.++++.|+..|+|.+.....+.-.-...+|+.+..+.
T Consensus 33 q~~vL~~L~~~~~~~~~~eLa~~l~~---~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~ 100 (151)
T 4aik_A 33 HWVTLYNINRLPPEQSQIQLAKAIGI---EQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPII 100 (151)
T ss_dssp HHHHHHHHHHSCTTSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCc---CHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHH
Confidence 44566666554456788999999999 899999999999999999987522110011367787776444
|
| >2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A | Back alignment and structure |
|---|
Probab=94.68 E-value=0.023 Score=44.59 Aligned_cols=68 Identities=12% Similarity=0.218 Sum_probs=50.4
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ +...+.+.|+.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 48 ~~~~iL~~l~~~-~~~t~~ela~~l~~---s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 115 (153)
T 2pex_A 48 PQYLVMLVLWET-DERSVSEIGERLYL---DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALR 115 (153)
T ss_dssp HHHHHHHHHHHS-CSEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGG
T ss_pred HHHHHHHHHHhC-CCcCHHHHHHHhCC---CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHH
Confidence 345677777665 68999999999999 889999999999999999987421100012477888777554
|
| >2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.018 Score=43.29 Aligned_cols=52 Identities=19% Similarity=0.349 Sum_probs=44.1
Q ss_pred HHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 26 ALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 26 ~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+|....++.++..|.+ ++.|+.+||+.+++ ++..+.+.|+.|...|++.+..
T Consensus 28 ~l~~~~~~~il~~L~~--~~~s~~ela~~l~i---s~stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 28 ALATPSRLMILTQLRN--GPLPVTDLAEAIGM---EQSAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp HHCCHHHHHHHHHHHH--CCCCHHHHHHHHSS---CHHHHHHHHHHHHHHCSEEEEE
T ss_pred HhCCHHHHHHHHHHHH--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 3444456778888876 58999999999999 8999999999999999998765
|
| >3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A | Back alignment and structure |
|---|
Probab=94.62 E-value=0.034 Score=46.62 Aligned_cols=50 Identities=18% Similarity=0.315 Sum_probs=45.5
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++++..+||+.+++ ++..+.+.|+.|...|++.+.. ...+.+|+.++.+.
T Consensus 19 ~~~~~~~lA~~l~v---s~~tvs~~l~~Le~~GlV~r~~------~~~i~LT~~G~~~~ 68 (214)
T 3hrs_A 19 NKITNKEIAQLMQV---SPPAVTEMMKKLLAEELLIKDK------KAGYLLTDLGLKLV 68 (214)
T ss_dssp SCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET------TTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEEec------CCCeEECHHHHHHH
Confidence 79999999999999 8899999999999999999997 57899999887554
|
| >3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.016 Score=44.42 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=49.3
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... ++.|..+||+.+++ +...+.+.++.|+..|++.+.....+.-.-.+.+|+.+..+.
T Consensus 30 ~~~~iL~~l~~~-~~~~~~ela~~l~~---s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 30 AQVACLLRIHRE-PGIKQDELATFFHV---DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEII 97 (138)
T ss_dssp HHHHHHHHHHHS-TTCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHH
Confidence 345567777664 69999999999999 889999999999999999986421000001266777665443
|
| >1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.031 Score=43.35 Aligned_cols=69 Identities=13% Similarity=0.240 Sum_probs=51.9
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhhc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLH 103 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~~ 103 (350)
.++.++..|... +++|..+||+.+++ +...+.+.++.|+..|+|.+.....+.-.-.+.+|+.+..+..
T Consensus 41 ~~~~iL~~l~~~-~~~~~~~la~~l~~---~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 41 PQYLALLLLWEH-ETLTVKKMGEQLYL---DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHHHHHHHH-SEEEHHHHHHTTTC---CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCC---CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 456677777654 68999999999999 8999999999999999999875221111224788888775543
|
| >3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=94.53 E-value=0.056 Score=42.01 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=41.6
Q ss_pred hcChhhhhhhCC-CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 32 ELRLADIMHSHG-SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.++..|...+ +++|..+||+.+++ ++..+.+.++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 43 q~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 111 (148)
T 3jw4_A 43 QGRMIGYIYENQESGIIQKDLAQFFGR---RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALV 111 (148)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHC---------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCC---ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHH
Confidence 355667776532 69999999999999 889999999999999999987521100012356666665443
|
| >2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A | Back alignment and structure |
|---|
Probab=94.41 E-value=0.025 Score=40.68 Aligned_cols=49 Identities=12% Similarity=0.261 Sum_probs=40.2
Q ss_pred CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCC---eEecChhchhhh
Q 018775 45 PITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDET---LYKMTHISKWLL 102 (350)
Q Consensus 45 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~---~~~~t~~s~~l~ 102 (350)
++|..+||+.+++ +...+.++|+.|+..|+|.... ++ .+++|+.+..+.
T Consensus 30 ~~t~~eLa~~l~i---~~~tvs~~l~~Le~~Glv~~~~------d~R~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 30 DVYIQYIASKVNS---PHSYVWLIIKKFEEAKMVECEL------EGRTKIIRLTDKGQKIA 81 (95)
T ss_dssp CEEHHHHHHHSSS---CHHHHHHHHHHHHHTTSEEEEE------ETTEEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCc---CHHHHHHHHHHHHHCcCccCCC------CCCeEEEEEChhHHHHH
Confidence 3899999999999 8899999999999999994332 23 488888776544
|
| >2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.02 Score=41.53 Aligned_cols=53 Identities=8% Similarity=0.221 Sum_probs=41.1
Q ss_pred HHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 25 MALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
++|.--.++.++..|... ++.++.|||+.+|+ ++..+.+.|+.|... ++....
T Consensus 22 ~aL~~~~Rl~IL~~l~~~-~~~~~~ela~~l~i---s~stvs~hL~~L~~~-lv~~~~ 74 (99)
T 2zkz_A 22 KTMAHPMRLKIVNELYKH-KALNVTQIIQILKL---PQSTVSQHLCKMRGK-VLKRNR 74 (99)
T ss_dssp HHHCSHHHHHHHHHHHHH-SCEEHHHHHHHHTC---CHHHHHHHHHHHBTT-TBEEEE
T ss_pred HHhCCHHHHHHHHHHHHC-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHH-hhhheE
Confidence 334444566677443322 79999999999999 889999999999999 998664
|
| >1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 | Back alignment and structure |
|---|
Probab=94.30 E-value=0.022 Score=41.61 Aligned_cols=48 Identities=10% Similarity=0.377 Sum_probs=40.9
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.++.++..|... ++.|..+||+.+++ +...+.+.|+.|...|+|.+..
T Consensus 21 ~~~~il~~l~~~-~~~s~~ela~~l~i---s~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 21 SDVRIYSLLLER-GGMRVSEIARELDL---SARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEe
Confidence 445566666543 68999999999999 8999999999999999999875
|
| >2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.27 E-value=0.026 Score=43.68 Aligned_cols=68 Identities=9% Similarity=0.122 Sum_probs=50.2
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ +...+.+.++.|+..|+|.+.....+...-.+.+|+.+..+.
T Consensus 34 ~~~~iL~~l~~~-~~~~~~~la~~l~~---s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 34 AQFDILQKIYFE-GPKRPGELSVLLGV---AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVI 101 (145)
T ss_dssp HHHHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCC---CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHH
Confidence 456677777654 69999999999999 889999999999999999987421000001467777776444
|
| >1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=94.21 E-value=0.062 Score=36.41 Aligned_cols=52 Identities=10% Similarity=0.091 Sum_probs=41.5
Q ss_pred hhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecC
Q 018775 36 ADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMT 95 (350)
Q Consensus 36 fd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t 95 (350)
++.|... +..|+.+||+++|+ +...+.|.|--|...|+|.....+ +-.|+.+
T Consensus 21 i~~L~~~-~~~Ta~~IAkkLg~---sK~~vNr~LY~L~kkG~V~~~~~~----PP~W~~~ 72 (75)
T 1sfu_A 21 VLSLNTN-DYTTAISLSNRLKI---NKKKINQQLYKLQKEDTVKMVPSN----PPKWFKN 72 (75)
T ss_dssp HHTSCTT-CEECHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEECCS----SCEEEEC
T ss_pred HHhCCCC-cchHHHHHHHHHCC---CHHHHHHHHHHHHHCCCEecCCCC----CCCccCC
Confidence 4466652 34999999999999 788899999999999999998632 4566654
|
| >1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A | Back alignment and structure |
|---|
Probab=93.98 E-value=0.054 Score=38.75 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=49.3
Q ss_pred hcChhhhhhhCCCCCCHHHHHh-hcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhhc
Q 018775 32 ELRLADIMHSHGSPITLPQLAS-RIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLH 103 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~-~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~~ 103 (350)
++.++-.|... ++.|+.+||+ ..++ +...+.|-++.|...|+|+.++ ++ ..+|+.++.+..
T Consensus 18 QfsiL~~L~~~-~~~t~~~Lae~~l~~---drstvsrnl~~L~r~GlVe~~~------~D-l~LT~~G~~~l~ 79 (95)
T 1bja_A 18 TATILITIAKK-DFITAAEVREVHPDL---GNAVVNSNIGVLIKKGLVEKSG------DG-LIITGEAQDIIS 79 (95)
T ss_dssp HHHHHHHHHHS-TTBCHHHHHHTCTTS---CHHHHHHHHHHHHTTTSEEEET------TE-EEECHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHhcc---cHHHHHHHHHHHHHCCCeecCC------CC-eeeCHhHHHHHH
Confidence 34556667666 5999999999 9999 8899999999999999999444 23 889988875553
|
| >3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.075 Score=42.34 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=47.3
Q ss_pred HhcChhhhhhhC-CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCC---eEecChhchhhh
Q 018775 31 VELRLADIMHSH-GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDET---LYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~-~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~---~~~~t~~s~~l~ 102 (350)
.++.++..|... ++++|..+||+.+++ +...+.++++.|+..|+|.+..... +. .+.+|+.+..+.
T Consensus 47 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~---DrR~~~l~LT~~G~~~~ 116 (168)
T 3u2r_A 47 QQYNTLRLLRSVHPEGMATLQIADRLIS---RAPDITRLIDRLDDRGLVLRTRKPE---NRRVVEVALTDAGLKLL 116 (168)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHC------CTHHHHHHHHHHHTTSEEEEEETT---EEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEeecCCCC---CCCeeEeEECHHHHHHH
Confidence 456677777653 159999999999999 8899999999999999999875210 12 467777776444
|
| >2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.96 E-value=0.066 Score=43.33 Aligned_cols=69 Identities=13% Similarity=0.168 Sum_probs=48.5
Q ss_pred HhcChhhhhhhCCCC--CCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSP--ITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~--~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|...++| +|..+||+.+++ +...+.+.|+.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 70 AGWDLLLTLYRSAPPEGLRPTELSALAAI---SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALV 140 (181)
T ss_dssp HHHHHHHHHHHHCCSSCBCHHHHHHHCSC---CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 356677788664332 999999999999 889999999999999999987421100012367777666443
|
| >2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.92 E-value=0.017 Score=44.56 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=49.9
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ +...+.+.++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 37 ~~~~iL~~l~~~-~~~t~~ela~~l~~---s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (142)
T 2fbi_A 37 QQWRVIRILRQQ-GEMESYQLANQACI---LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCF 104 (142)
T ss_dssp HHHHHHHHHHHH-CSEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHH
Confidence 456677777654 68999999999999 889999999999999999987421000001367777766443
|
| >2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D | Back alignment and structure |
|---|
Probab=93.88 E-value=0.029 Score=42.70 Aligned_cols=68 Identities=9% Similarity=0.216 Sum_probs=49.1
Q ss_pred hcChhhhhhhC-CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 32 ELRLADIMHSH-GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~-~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.++..|... ++++|..+||+.+++ +...+.++|+.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 39 q~~vL~~l~~~~~~~~t~~eLa~~l~~---~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 39 EFAVLTYISENKEKEYYLKDIINHLNY---KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI 107 (127)
T ss_dssp HHHHHHHHHHTCCSEEEHHHHHHHSSS---HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 45566666553 158999999999999 889999999999999999986421111112467787776443
|
| >2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64 | Back alignment and structure |
|---|
Probab=93.81 E-value=0.048 Score=45.23 Aligned_cols=70 Identities=13% Similarity=0.206 Sum_probs=52.0
Q ss_pred HHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccC-C-CCCCCeEecChhc
Q 018775 24 SMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSS-D-GGDETLYKMTHIS 98 (350)
Q Consensus 24 ~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-~-~~~~~~~~~t~~s 98 (350)
..+|..-.++.|+..|.. +|.+..+||+.+|+ +...+.+.|+.|...|+|...... . ++..-.|++|+..
T Consensus 9 lkaL~~~~rl~IL~~L~~--~~~s~~eLa~~l~i---s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~ 80 (202)
T 2p4w_A 9 LDVLGNETRRRILFLLTK--RPYFVSELSRELGV---GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGL 80 (202)
T ss_dssp HHHHHSHHHHHHHHHHHH--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTE
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHH
Confidence 345555566677777765 79999999999999 889999999999999999986421 1 1122357777654
|
| >3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.11 Score=32.68 Aligned_cols=43 Identities=12% Similarity=0.209 Sum_probs=39.6
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
.++|+.|+|...++ +-+..+.-|+.|-+.|-+.+.. .+|++.|
T Consensus 17 QGMTaGEVAA~f~w---~Le~ar~aLeqLf~~G~LRKRs-------SRYrlkp 59 (68)
T 3i71_A 17 QGMTAGEVAAHFGW---PLEKARNALEQLFSAGTLRKRS-------SRYRLKP 59 (68)
T ss_dssp TCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC-------CEEEECC
T ss_pred ccccHHHHHHHhCC---cHHHHHHHHHHHHhcchhhhhc-------cccccCc
Confidence 69999999999999 8899999999999999999996 7898765
|
| >2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.05 Score=41.68 Aligned_cols=52 Identities=6% Similarity=0.199 Sum_probs=44.0
Q ss_pred HHHhcChhhhhhhCCCCCCHHHHHhhc-----CCCCCCcccHHHHHHHhhcCCceeeccc
Q 018775 29 SAVELRLADIMHSHGSPITLPQLASRI-----DSSCPDIPYLARLMRMLVRKGIFAVHQS 83 (350)
Q Consensus 29 ~~~~lglfd~L~~~~~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 83 (350)
+-.+.-|++.|...+++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+...
T Consensus 10 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i---s~~TVYR~L~~L~e~Glv~~~~~ 66 (131)
T 2o03_A 10 TRQRAAISTLLETLDDFRSAQELHDELRRRGENI---GLTTVYRTLQSMASSGLVDTLHT 66 (131)
T ss_dssp HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCCEEEEEe
Confidence 456677888886544799999999998 67 88899999999999999998763
|
| >2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=93.66 E-value=0.051 Score=42.31 Aligned_cols=47 Identities=19% Similarity=0.335 Sum_probs=41.1
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..+++.|... ++.|..|||+.+|+ ++..+.+.|+.|...|++.+..
T Consensus 7 d~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 53 (144)
T 2cfx_A 7 DLNIIEELKKD-SRLSMRELGRKIKL---SPPSVTERVRQLESFGIIKQYT 53 (144)
T ss_dssp HHHHHHHHHHC-SCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEe
Confidence 44677788765 69999999999999 8899999999999999998764
|
| >1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B | Back alignment and structure |
|---|
Probab=93.60 E-value=0.024 Score=39.42 Aligned_cols=48 Identities=19% Similarity=0.378 Sum_probs=39.6
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcC----CCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRID----SSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~----~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..+++.|... ++.|+.||++.++ + +...+.++|+.|+..|+|.+..
T Consensus 10 ~e~~vL~~L~~~-~~~t~~ei~~~l~~~~~~---s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 10 AELEVMKVIWKH-SSINTNEVIKELSKTSTW---SPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHHHTS-SSEEHHHHHHHHHHHSCC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHhhcCCc---cHHHHHHHHHHHHHCCCeEEEe
Confidence 345566666543 6999999999996 5 6788999999999999999886
|
| >2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.59 E-value=0.038 Score=34.88 Aligned_cols=47 Identities=21% Similarity=0.367 Sum_probs=41.6
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeec
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVH 81 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 81 (350)
+-.|++.+..+||-+.++.+|+..|+ +..-+..+|+.|++.|++.-+
T Consensus 12 e~~lL~yIr~sGGildI~~~a~kygV---~kdeV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 12 ERELLDYIVNNGGFLDIEHFSKVYGV---EKQEVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHHHTTSEEEHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCEEeHHHHHHHhCC---CHHHHHHHHHHHHHCCCeecc
Confidence 44678888888788899999999999 889999999999999998754
|
| >3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.1 Score=42.63 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=52.9
Q ss_pred HHHhcChhhhhhhC-CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 29 SAVELRLADIMHSH-GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 29 ~~~~lglfd~L~~~-~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+..++.++..|... ++++|..+||+.+++ +...+.++++.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 40 t~~q~~vL~~L~~~~~~~~t~~eLa~~l~i---s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 111 (189)
T 3nqo_A 40 TSRQYMTILSILHLPEEETTLNNIARKMGT---SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVM 111 (189)
T ss_dssp CHHHHHHHHHHHHSCGGGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 44566777777642 168999999999999 889999999999999999997522111012478888887544
|
| >2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A | Back alignment and structure |
|---|
Probab=93.50 E-value=0.055 Score=42.41 Aligned_cols=47 Identities=19% Similarity=0.245 Sum_probs=40.9
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..++..|... ++.|..|||+.+|+ ++..+.+.|+.|...|++.+..
T Consensus 9 ~~~iL~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 55 (150)
T 2w25_A 9 DRILVRELAAD-GRATLSELATRAGL---SVSAVQSRVRRLESRGVVQGYS 55 (150)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEE
Confidence 45677777764 69999999999999 8899999999999999998764
|
| >2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.027 Score=40.89 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=40.7
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCC-CCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSS-CPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~-~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.++.|+..|-+. +++|+.||++.++.. +.+...+.++|+.|+..|+|.+..
T Consensus 36 ~e~~VL~~L~~~-~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 36 AELIVMRVIWSL-GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp SCSHHHHHHHHH-SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 346677777654 699999999999751 015678999999999999999986
|
| >2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A | Back alignment and structure |
|---|
Probab=93.44 E-value=0.022 Score=48.35 Aligned_cols=71 Identities=15% Similarity=0.252 Sum_probs=51.6
Q ss_pred HHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceee-cccC-CCC-CCCeEecChhch
Q 018775 24 SMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAV-HQSS-DGG-DETLYKMTHISK 99 (350)
Q Consensus 24 ~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~-~~~~-~~~-~~~~~~~t~~s~ 99 (350)
..+|..-.++.|+..|.. +|+|+.+||+.+|+ +...+.+.|+.|...|+|.. .... ..| +.-.|++++...
T Consensus 6 lkaL~~~~R~~IL~~L~~--g~~s~~ELa~~lgl---S~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~ 79 (232)
T 2qlz_A 6 FYILGNKVRRDLLSHLTC--MECYFSLLSSKVSV---SSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAKS 79 (232)
T ss_dssp HHHHTSHHHHHHHHHHTT--TTTCSSSSCTTCCC---CHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCEE
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccchh
Confidence 344555566778888875 79999999999999 88999999999999999998 3210 001 012477776554
|
| >1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A | Back alignment and structure |
|---|
Probab=93.20 E-value=0.073 Score=43.73 Aligned_cols=52 Identities=12% Similarity=0.243 Sum_probs=45.0
Q ss_pred HHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeec
Q 018775 25 MALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVH 81 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 81 (350)
.++....+..++..|.+ +++|..|||+.+|+ ++..+.+.|+.|...|++.+.
T Consensus 15 k~l~d~~~~~IL~~L~~--~~~s~~eLA~~lgl---S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 15 KVMLEDTRRKILKLLRN--KEMTISQLSEILGK---TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHSHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCHHHHHHHHHHHc--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 34445567778888874 79999999999999 889999999999999999987
|
| >2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* | Back alignment and structure |
|---|
Probab=93.13 E-value=0.051 Score=42.57 Aligned_cols=48 Identities=19% Similarity=0.324 Sum_probs=41.9
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..++..|... ++.|..|||+.+|+ ++..+.+.|+.|...|++.+..
T Consensus 4 ~~~~il~~L~~~-~~~~~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 51 (150)
T 2pn6_A 4 IDLRILKILQYN-AKYSLDEIAREIRI---PKATLSYRIKKLEKDGVIKGYY 51 (150)
T ss_dssp HHHHHHHHHTTC-TTSCHHHHHHHHTS---CHHHHHHHHHHHHHTTSSCCCC
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEEE
Confidence 355678888764 68999999999999 8899999999999999999754
|
| >2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A | Back alignment and structure |
|---|
Probab=93.11 E-value=0.068 Score=42.50 Aligned_cols=47 Identities=15% Similarity=0.276 Sum_probs=41.0
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..++..|... +++|..|||+.+|+ ++..+.+.|+.|...|++.+..
T Consensus 12 ~~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 58 (162)
T 2p5v_A 12 DIKILQVLQEN-GRLTNVELSERVAL---SPSPCLRRLKQLEDAGIVRQYA 58 (162)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEeeec
Confidence 45677777765 69999999999999 8899999999999999999764
|
| >1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41 | Back alignment and structure |
|---|
Probab=93.10 E-value=0.032 Score=41.19 Aligned_cols=47 Identities=13% Similarity=0.338 Sum_probs=38.6
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeec
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVH 81 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 81 (350)
++.++..|...|.++|..+||+.+|+ +...+++.|..|...|++...
T Consensus 20 ~l~Il~~l~~~g~~~s~~eLa~~lgv---s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 20 VIDVLRILLDKGTEMTDEEIANQLNI---KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp THHHHHHHHHHCSCBCHHHHHHTTTS---CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEE
Confidence 34566666322248999999999999 889999999999999999887
|
| >2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85 | Back alignment and structure |
|---|
Probab=92.82 E-value=0.13 Score=36.65 Aligned_cols=47 Identities=11% Similarity=0.175 Sum_probs=39.3
Q ss_pred cChhhhhhhCC-CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 33 LRLADIMHSHG-SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 33 lglfd~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+.|+..|...+ .+++..+||+++++ +...+.+.|+.|+..|||.+..
T Consensus 23 ~~Vl~~I~~~g~~gi~qkeLa~~~~l---~~~tvt~iLk~LE~kglIkr~~ 70 (91)
T 2dk5_A 23 KLVYQIIEDAGNKGIWSRDVRYKSNL---PLTEINKILKNLESKKLIKAVK 70 (91)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 44666666521 48999999999999 8899999999999999999664
|
| >1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6 | Back alignment and structure |
|---|
Probab=92.76 E-value=0.15 Score=37.02 Aligned_cols=52 Identities=8% Similarity=0.259 Sum_probs=40.3
Q ss_pred HHHHHhcChhh-hhhhCCCCC-CHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 27 LKSAVELRLAD-IMHSHGSPI-TLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 27 l~~~~~lglfd-~L~~~~~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+.-.++..+.+ .+.. +..+ |..+||+.+|+ +...+++-|+.|...|++....
T Consensus 16 l~~~i~~~I~~~~l~~-g~~lps~~eLa~~~~v---Sr~tvr~al~~L~~~Gli~~~~ 69 (102)
T 1v4r_A 16 VATHFRTLIKSGELAP-GDTLPSVADIRAQFGV---AAKTVSRALAVLKSEGLVSSRG 69 (102)
T ss_dssp HHHHHHHHTTTTSCCT-TSBCCCHHHHHHHSSS---CTTHHHHHTTTTTTSSCCEEET
T ss_pred HHHHHHHHHHhCCCCC-cCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC
Confidence 34444555555 3433 2456 99999999999 8899999999999999999886
|
| >1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A | Back alignment and structure |
|---|
Probab=92.71 E-value=0.026 Score=42.48 Aligned_cols=46 Identities=13% Similarity=0.202 Sum_probs=37.9
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcC----CCCCCcccHHHHHHHhhcCCceeecc
Q 018775 33 LRLADIMHSHGSPITLPQLASRID----SSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~----~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+.++..|... ++.|..+||+.++ + +...+.++|+.|+..|+|.+..
T Consensus 13 ~~vL~~l~~~-~~~t~~ela~~l~~~~~~---s~~tv~~~l~~L~~~Glv~r~~ 62 (123)
T 1okr_A 13 WEVMNIIWMK-KYASANNIIEEIQMQKDW---SPKTIRTLITRLYKKGFIDRKK 62 (123)
T ss_dssp HHHHHHHHHH-SSEEHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHhC-CCcCHHHHHHHHhccCCC---cHhhHHHHHHHHHHCCCeEEEe
Confidence 3344455432 6999999999998 6 6889999999999999999986
|
| >2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.085 Score=42.43 Aligned_cols=48 Identities=8% Similarity=0.271 Sum_probs=41.6
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..++..|..+ ++.|..|||+.+|+ ++..+.+.|+.|...|++.+..
T Consensus 18 ~d~~IL~~L~~~-~~~s~~eLA~~lgl---S~~tv~~~l~~L~~~G~I~~~~ 65 (171)
T 2ia0_A 18 LDRNILRLLKKD-ARLTISELSEQLKK---PESTIHFRIKKLQERGVIERYT 65 (171)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeec
Confidence 345678888765 68999999999999 8899999999999999998754
|
| >2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50 | Back alignment and structure |
|---|
Probab=92.57 E-value=0.068 Score=38.88 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=34.3
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
++.|..|||+.+|+ +...+.+.|+.|...|++.+..
T Consensus 35 ~~~t~~ela~~l~i---s~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 35 KPITSEELADIFKL---SKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeec
Confidence 69999999999999 8899999999999999999975
|
| >2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.50 E-value=0.077 Score=41.59 Aligned_cols=48 Identities=25% Similarity=0.401 Sum_probs=41.7
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..++..|... ++.|..|||+.+|+ ++..+.+.++.|...|++.+..
T Consensus 10 ~d~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 57 (151)
T 2dbb_A 10 VDMQLVKILSEN-SRLTYRELADILNT---TRQRIARRIDKLKKLGIIRKFT 57 (151)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHTTS---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEE
Confidence 345677888765 69999999999999 8899999999999999998764
|
| >1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1 | Back alignment and structure |
|---|
Probab=92.44 E-value=0.084 Score=43.14 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=46.3
Q ss_pred HHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCc-eeecccCCCCCCCeEecChh
Q 018775 30 AVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGI-FAVHQSSDGGDETLYKMTHI 97 (350)
Q Consensus 30 ~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~-l~~~~~~~~~~~~~~~~t~~ 97 (350)
--...+++.|.+.++++|..|||+.+|+ +.+.+++-|+.|...|+ +.... ++|.+...
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~v---S~~Ti~rdi~~L~~~G~~I~~~~-------~Gy~l~~~ 79 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELSV---SRQVIVQDIAYLRSLGYNIVATP-------RGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHTS---CHHHHHHHHHHHHHHTCCCEEET-------TEEECCTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEC-------CEEEECCc
Confidence 3455677888753357999999999999 89999999999999999 77643 66877653
|
| >2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71 | Back alignment and structure |
|---|
Probab=92.40 E-value=0.15 Score=36.57 Aligned_cols=53 Identities=25% Similarity=0.379 Sum_probs=41.9
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
++.+..+||+.+++ +...|.|.|..|...|++.+.... ++ .+...+|+.++.+
T Consensus 35 ~~~s~~eLa~~l~l---~~stLsR~l~rLe~~GLV~r~~~~-D~-R~~v~LT~~G~~~ 87 (96)
T 2obp_A 35 TPWSLPKIAKRAQL---PMSVLRRVLTQLQAAGLADVSVEA-DG-RGHASLTQEGAAL 87 (96)
T ss_dssp CCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECT-TS-CEEEEECHHHHHH
T ss_pred CCcCHHHHHHHhCC---chhhHHHHHHHHHHCCCEEeecCC-CC-ceeEEECHHHHHH
Confidence 67899999999999 899999999999999999986431 11 2345777766543
|
| >2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A* | Back alignment and structure |
|---|
Probab=92.39 E-value=0.09 Score=41.01 Aligned_cols=52 Identities=6% Similarity=0.094 Sum_probs=43.6
Q ss_pred HHHhcChhhhhhhCCCCCCHHHHHhhc-----CCCCCCcccHHHHHHHhhcCCceeeccc
Q 018775 29 SAVELRLADIMHSHGSPITLPQLASRI-----DSSCPDIPYLARLMRMLVRKGIFAVHQS 83 (350)
Q Consensus 29 ~~~~lglfd~L~~~~~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 83 (350)
+-.+.-|++.|...+++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+...
T Consensus 21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~~ 77 (145)
T 2fe3_A 21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNM---SVATVYNNLRVFRESGLVKELTY 77 (145)
T ss_dssp CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC---CHHHHHHHHHHHHHTTSEEEECC
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---ChhhHHHHHHHHHHCCCEEEEee
Confidence 445566888886644799999999998 66 78899999999999999999763
|
| >2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=92.34 E-value=0.075 Score=41.72 Aligned_cols=47 Identities=9% Similarity=0.159 Sum_probs=41.2
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..++..|... ++.|..|||+.+|+ ++..+.+.|+.|...|++.+..
T Consensus 10 d~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 56 (152)
T 2cg4_A 10 DRGILEALMGN-ARTAYAELAKQFGV---SPETIHVRVEKMKQAGIITGAR 56 (152)
T ss_dssp HHHHHHHHHHC-TTSCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHcCCcceEE
Confidence 45677788765 69999999999999 8899999999999999999754
|
| >2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=92.31 E-value=0.057 Score=44.92 Aligned_cols=68 Identities=10% Similarity=0.071 Sum_probs=50.5
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... +++|..+||+.+++ +...+.++|+.|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 49 ~q~~iL~~L~~~-~~~t~~eLa~~l~i---~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 49 NEHHILWIAYQL-NGASISEIAKFGVM---HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHHHHHH-TSEEHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHH
Confidence 345667777654 69999999999999 889999999999999999997521110012578888877554
|
| >3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=92.29 E-value=0.078 Score=42.22 Aligned_cols=48 Identities=13% Similarity=0.278 Sum_probs=42.5
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..+++.|..+ +++|..+||+++|+ ++..+++-++.|...|++.+..
T Consensus 4 ~d~~il~~L~~~-~~~s~~~la~~lg~---s~~tv~~rl~~L~~~g~i~~~~ 51 (162)
T 3i4p_A 4 LDRKILRILQED-STLAVADLAKKVGL---STTPCWRRIQKMEEDGVIRRRV 51 (162)
T ss_dssp HHHHHHHHHTTC-SCSCHHHHHHHHTC---CHHHHHHHHHHHHHTTSSCCCC
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeece
Confidence 356788888875 79999999999999 8899999999999999998764
|
| >3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei} | Back alignment and structure |
|---|
Probab=92.24 E-value=0.15 Score=39.91 Aligned_cols=69 Identities=19% Similarity=0.183 Sum_probs=49.4
Q ss_pred HhcChhhhhhhCC-CCCCHHHHHhhcC-CCCCCcccHHHHHHHhhcCCceeecccCC----CC-CCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHG-SPITLPQLASRID-SSCPDIPYLARLMRMLVRKGIFAVHQSSD----GG-DETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~-~~~t~~ela~~~~-~~~~~~~~l~~~L~~L~~~g~l~~~~~~~----~~-~~~~~~~t~~s~~l~ 102 (350)
.+..|+..|-..+ +..|+++|++.++ + +...+++.|+.|+..|+|++..... .+ +-..|.+|+.++...
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~l---S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l 105 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRNPDE---TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALL 105 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhcCCC---CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHH
Confidence 4455555554321 4589999999998 8 8899999999999999999753211 11 123799999887443
|
| >4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=92.22 E-value=0.063 Score=41.89 Aligned_cols=67 Identities=15% Similarity=0.257 Sum_probs=46.9
Q ss_pred cChhhhhhhC-CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 33 LRLADIMHSH-GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 33 lglfd~L~~~-~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+.++..|... ++++|..+||+.+++ ++..+.++++.|+..|+|++.....+.-.-...+|+.+..+.
T Consensus 38 ~~vL~~L~~~~~~~~t~~eLa~~l~~---~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 38 YEALVLLTFSKSGELPMSKIGERLMV---HPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVV 105 (147)
T ss_dssp HHHHHHHHTSGGGEEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHH
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHH
Confidence 3445555321 268999999999999 899999999999999999987521100001367787776444
|
| >2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=92.13 E-value=0.25 Score=36.90 Aligned_cols=71 Identities=15% Similarity=0.170 Sum_probs=51.7
Q ss_pred HHHHHhcChhhhhhhCCCCCCHHHHHhhcC--------CCCCCc-ccHHHHHHHhhcCCceeecccCCCCC-CCeEecCh
Q 018775 27 LKSAVELRLADIMHSHGSPITLPQLASRID--------SSCPDI-PYLARLMRMLVRKGIFAVHQSSDGGD-ETLYKMTH 96 (350)
Q Consensus 27 l~~~~~lglfd~L~~~~~~~t~~ela~~~~--------~~~~~~-~~l~~~L~~L~~~g~l~~~~~~~~~~-~~~~~~t~ 96 (350)
+....++-|+..|.. +|.+.-+|++.++ + ++ ..+.+.|+.|+..|+|+......+++ .-.|++|+
T Consensus 10 ~~~~~~~~IL~~L~~--~~~~gyel~~~l~~~g~~~~~i---s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~ 84 (118)
T 2esh_A 10 RGWWLASTILLLVAE--KPSHGYELAERLAEFGIEIPGI---GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITP 84 (118)
T ss_dssp HHHHHHHHHHHHHHH--SCBCHHHHHHHHHTTCCSSTTC---CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECH
T ss_pred ccchHHHHHHHHHHc--CCCCHHHHHHHHHHhCCcccCC---CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEECh
Confidence 344456666777766 6999999999883 5 78 89999999999999998864211111 23589999
Q ss_pred hchhhh
Q 018775 97 ISKWLL 102 (350)
Q Consensus 97 ~s~~l~ 102 (350)
.+....
T Consensus 85 ~G~~~l 90 (118)
T 2esh_A 85 QGKLYL 90 (118)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887443
|
| >2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=92.02 E-value=0.066 Score=42.00 Aligned_cols=47 Identities=11% Similarity=0.218 Sum_probs=41.1
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..++..|..+ ++.|..|||+.+|+ ++..+.+.|+.|...|++.+..
T Consensus 9 ~~~il~~L~~~-~~~s~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 55 (151)
T 2cyy_A 9 DKKIIKILQND-GKAPLREISKITGL---AESTIHERIRKLRESGVIKKFT 55 (151)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHCS---CHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEE
Confidence 45677778765 69999999999999 8899999999999999998764
|
| >3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=91.82 E-value=0.097 Score=43.07 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=32.6
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
-|.|..|||+.+|+ +...+.+.|+.|+..|++.+..
T Consensus 23 ~~~s~~eia~~lgl---~~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 23 YPPSVREIARRFRI---TPRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp SCCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECC-
T ss_pred CCCCHHHHHHHcCC---CcHHHHHHHHHHHHCCCEEecC
Confidence 58999999999999 6668999999999999999885
|
| >1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 | Back alignment and structure |
|---|
Probab=91.77 E-value=0.084 Score=40.86 Aligned_cols=46 Identities=11% Similarity=0.162 Sum_probs=37.8
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.++..|....+|+|..+||+.+|+ +...+.+.|+.|+..|+|.+..
T Consensus 30 ~il~~L~~~~~~~t~~ela~~l~~---~~stvs~~l~~L~~~G~v~r~~ 75 (152)
T 1ku9_A 30 AVYAILYLSDKPLTISDIMEELKI---SKGNVSMSLKKLEELGFVRKVW 75 (152)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 345555311269999999999999 8899999999999999999963
|
| >1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=91.77 E-value=0.078 Score=40.92 Aligned_cols=47 Identities=13% Similarity=0.254 Sum_probs=40.2
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..++..|... ++.|..|||+.+|+ ++..+.+.|+.|...|++.+..
T Consensus 6 ~~~il~~L~~~-~~~~~~ela~~lg~---s~~tv~~~l~~L~~~G~i~~~~ 52 (141)
T 1i1g_A 6 DKIILEILEKD-ARTPFTEIAKKLGI---SETAVRKRVKALEEKGIIEGYT 52 (141)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEeccc
Confidence 34566777654 68999999999999 8899999999999999998764
|
| >2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=91.75 E-value=0.14 Score=40.09 Aligned_cols=51 Identities=14% Similarity=0.344 Sum_probs=44.1
Q ss_pred HHHhcChhhhhhhCCCCCCHHHHHhhc-----CCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 29 SAVELRLADIMHSHGSPITLPQLASRI-----DSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 29 ~~~~lglfd~L~~~~~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..+.-|++.|...+++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+..
T Consensus 26 T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 81 (150)
T 2xig_A 26 SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNT---SISSVYRILNFLEKENFISVLE 81 (150)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHhhHHHHHHHHHHCCcEEEEE
Confidence 566777888887655799999999998 56 7889999999999999999875
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=91.07 E-value=0.31 Score=42.34 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=66.1
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC--C--CC---CccEEEecchh
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD--A--IP---KADAVFMKWIL 254 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~--~--~p---~~D~i~~~~vl 254 (350)
...+||+=+|||.++++.++. .-+++.+|. +..++..++ ..+++++..|.++ . .| .||+|++=--.
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 567899999999999999884 468888998 777665554 5689999999765 1 12 49999983211
Q ss_pred ccCChHHHHHHHHHHHh--hCCCCCceEEEEeeeec
Q 018775 255 HDWDDEACVKILKNCRQ--AIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~--~L~~pgG~lli~e~~~~ 288 (350)
.. ..+..++++.+.+ .+. |+|.++|.=++.+
T Consensus 170 e~--k~~~~~vl~~L~~~~~r~-~~Gi~v~WYPi~~ 202 (283)
T 2oo3_A 170 ER--KEEYKEIPYAIKNAYSKF-STGLYCVWYPVVN 202 (283)
T ss_dssp CS--TTHHHHHHHHHHHHHHHC-TTSEEEEEEEESS
T ss_pred CC--CcHHHHHHHHHHHhCccC-CCeEEEEEEeccc
Confidence 10 1234455554444 234 7888888666554
|
| >1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A | Back alignment and structure |
|---|
Probab=91.04 E-value=0.12 Score=43.62 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=41.2
Q ss_pred CHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 47 TLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 47 t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+..+||+.+++ +...+.+.|+.|+..|++.+.. +..+.+|+.+..+.
T Consensus 26 ~~~~La~~l~v---s~~tvs~~l~~Le~~GlV~r~~------~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 26 LRARIAERLDQ---SGPTVSQTVSRMERDGLLRVAG------DRHLELTEKGRALA 72 (230)
T ss_dssp CHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT------TSCEEECHHHHHHH
T ss_pred cHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEeC------CccEEECHHHHHHH
Confidence 44999999999 8899999999999999999987 46789999887554
|
| >3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=90.83 E-value=0.15 Score=39.40 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=43.1
Q ss_pred HHHhcChhhhhhhCCCCCCHHHHHhhc-----CCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 29 SAVELRLADIMHSHGSPITLPQLASRI-----DSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 29 ~~~~lglfd~L~~~~~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..+.-|++.|...+++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+..
T Consensus 13 T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 68 (139)
T 3mwm_A 13 TRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAV---GLTTVYRTLQSLADAGEVDVLR 68 (139)
T ss_dssp HHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTSSEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHCCCEEEEE
Confidence 456677888887655799999999988 45 7889999999999999999975
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=90.76 E-value=0.28 Score=42.20 Aligned_cols=49 Identities=16% Similarity=0.120 Sum_probs=37.4
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP 226 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 226 (350)
...+++.+. .++..|||..||+|.++.+..+. +.+++++|+ +..++.++
T Consensus 202 ~~~~i~~~~---~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 202 IERIIRASS---NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp HHHHHHHHC---CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHhC---CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 344554443 56789999999999999988776 568999999 77776554
|
| >4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A* | Back alignment and structure |
|---|
Probab=90.66 E-value=0.13 Score=40.07 Aligned_cols=66 Identities=17% Similarity=0.256 Sum_probs=39.6
Q ss_pred hcChhhhhhhCC----CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 32 ELRLADIMHSHG----SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 32 ~lglfd~L~~~~----~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
++.++..|...+ +++|..+||+.+++ ++..+.++++.|+..|+|.+..+. +.-.-...+|+.+..+
T Consensus 35 q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~---~~~tvsr~v~~Le~~glVr~~~~~-DrR~~~v~LT~~G~~~ 104 (148)
T 4fx0_A 35 QFSTLAVISLSEGSAGIDLTMSELAARIGV---ERTTLTRNLEVMRRDGLVRVMAGA-DARCKRIELTAKGRAA 104 (148)
T ss_dssp HHHHHHHHHC---------CHHHHHHHHTC---CHHHHHHHHHHHHHTTSBC------------CCBCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeeCCC-CCCeeEEEECHHHHHH
Confidence 344555554321 46899999999999 899999999999999999554321 0000135666666543
|
| >1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42 | Back alignment and structure |
|---|
Probab=90.57 E-value=0.12 Score=39.81 Aligned_cols=51 Identities=10% Similarity=0.277 Sum_probs=42.3
Q ss_pred HHHhcChhhhhhhCC-CCCCHHHHHhhc-----CCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 29 SAVELRLADIMHSHG-SPITLPQLASRI-----DSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 29 ~~~~lglfd~L~~~~-~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+-.+.-|++.|...+ ++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+..
T Consensus 17 T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 73 (136)
T 1mzb_A 17 TLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDV---GLATVYRVLTQFEAAGLVVRHN 73 (136)
T ss_dssp CHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHHTSEEEEC
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC---CHHHHHHHHHHHHHCCcEEEEE
Confidence 345566888887654 689999999998 56 7889999999999999999876
|
| >2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A | Back alignment and structure |
|---|
Probab=90.55 E-value=0.65 Score=39.19 Aligned_cols=53 Identities=9% Similarity=0.095 Sum_probs=44.0
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
.-|.-.|.. ++.|.++||+.+|+ ++.-+...|.-|...|++.+.. ++...+.+
T Consensus 168 ~~l~~~l~~--~~~t~~~la~~~~l---~~~~V~~~l~~L~~~~~v~~~~------~~~~~~~~ 220 (232)
T 2qlz_A 168 AILHYLLLN--GRATVEELSDRLNL---KEREVREKISEMARFVPVKIIN------DNTVVLDE 220 (232)
T ss_dssp HHHHHHHHS--SEEEHHHHHHHHTC---CHHHHHHHHHHHTTTSCEEEET------TTEEEECH
T ss_pred HHHHHHHhc--CCCCHHHHHHHhCc---CHHHHHHHHHHHHhcCCeEEec------CCeEEecH
Confidence 445556665 79999999999999 8899999999999999998776 57766543
|
| >4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=90.52 E-value=0.081 Score=43.03 Aligned_cols=73 Identities=19% Similarity=0.284 Sum_probs=53.5
Q ss_pred HHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcC-CCCCCcccHHHHHHHhhcCCceeecccC--CCCCCCeEecChhchh
Q 018775 24 SMALKSAVELRLADIMHSHGSPITLPQLASRID-SSCPDIPYLARLMRMLVRKGIFAVHQSS--DGGDETLYKMTHISKW 100 (350)
Q Consensus 24 ~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~-~~~~~~~~l~~~L~~L~~~g~l~~~~~~--~~~~~~~~~~t~~s~~ 100 (350)
.++|.--.++.|+..|.+ +|.|+.+||+.++ + +...+.+.|+.|...|+|+...+. .+.....|++++.+..
T Consensus 17 ~~~La~P~Rl~il~~L~~--~~~~~~~l~~~l~~~---~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~~ 91 (182)
T 4g6q_A 17 VDLLHHPLRWRITQLLIG--RSLTTRELAELLPDV---ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAGD 91 (182)
T ss_dssp HHHTTSHHHHHHHHHTTT--SCEEHHHHHHHCTTB---CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTTT
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHhcCC---CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEecccccc
Confidence 445555678889999976 7999999999996 8 778999999999999999865421 0111235777765543
Q ss_pred h
Q 018775 101 L 101 (350)
Q Consensus 101 l 101 (350)
+
T Consensus 92 ~ 92 (182)
T 4g6q_A 92 A 92 (182)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39 | Back alignment and structure |
|---|
Probab=90.44 E-value=0.15 Score=39.33 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=40.0
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcC----CCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRID----SSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~----~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.++.|+..|....+++|..+|++.++ + +...+.++|+-|+..|+|.+..
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~---~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSARRDL---AYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTTCCC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhccCCC---CHHHHHHHHHHHHHCCCEEEEe
Confidence 34555666654226999999999997 6 7889999999999999999986
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=90.34 E-value=0.12 Score=51.15 Aligned_cols=120 Identities=20% Similarity=0.213 Sum_probs=72.2
Q ss_pred CCcceEEEecCCchHHHHHHHHHC-------CC-----CcEEEecc-h---hHhhhCC----------------------
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSY-------PH-----IKGINFDL-P---HVVATAP---------------------- 226 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~-------p~-----~~~~~~D~-~---~~~~~a~---------------------- 226 (350)
.+.-+|+|+|-|+|.....+.+.+ |+ ++++.++. | +.+..+.
T Consensus 57 ~~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 136 (689)
T 3pvc_A 57 QQSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLA 136 (689)
T ss_dssp SSEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCS
T ss_pred CCceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCC
Confidence 356799999999998887766542 33 56777774 3 2222100
Q ss_pred ---C----C--CCeEEEeccCCC--C-C-----CCccEEEecc-hhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeec
Q 018775 227 ---V----C--EGIFHVGGDMFD--A-I-----PKADAVFMKW-ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQ 288 (350)
Q Consensus 227 ---~----~--~~i~~~~~d~~~--~-~-----p~~D~i~~~~-vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~ 288 (350)
+ . -++++.-||..+ + + ..+|++++-. .-+.-++--...+++.+.++++ |||++.-.
T Consensus 137 ~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~-~g~~~~t~----- 210 (689)
T 3pvc_A 137 GCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTR-PGGTFSTF----- 210 (689)
T ss_dssp EEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEE-EEEEEEES-----
T ss_pred CceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhC-CCCEEEec-----
Confidence 0 1 245667788865 2 2 2388887732 1111111112467889999999 98876520
Q ss_pred CCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEE
Q 018775 289 EDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~ 337 (350)
. .....++.|.++||.+.++..
T Consensus 211 ----------------------~-----~~~~vr~~l~~aGf~~~~~~~ 232 (689)
T 3pvc_A 211 ----------------------T-----AAGFVRRGLQQAGFNVTKVKG 232 (689)
T ss_dssp ----------------------C-----CCHHHHHHHHHTTCEEEEEEC
T ss_pred ----------------------c-----CcHHHHHHHHhCCeEEEeccC
Confidence 0 124667888999998777653
|
| >1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 | Back alignment and structure |
|---|
Probab=90.04 E-value=0.17 Score=43.36 Aligned_cols=69 Identities=20% Similarity=0.296 Sum_probs=50.2
Q ss_pred HhcChhhhhhhCCC-CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGS-PITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~-~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|...++ ++|..|||+.+++ ++..+.++++-|+..|+|.+.....+.-.-...+|+.+..+.
T Consensus 159 ~q~~vL~~L~~~~~~~~t~~eLa~~l~i---~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~ 228 (250)
T 1p4x_A 159 VEFTILAIITSQNKNIVLLKDLIETIHH---KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHA 228 (250)
T ss_dssp HHHHHHHHHHTTTTCCEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHH
Confidence 44567777866432 5999999999999 899999999999999999997522110011356777776444
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=89.94 E-value=1.2 Score=40.50 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=74.0
Q ss_pred ceEEEecCCchHHHHHHHHHCCCCc-EEEecc-hhHhhhCCC-CCCeEEEeccCCC-C---C-------CCccEEEecch
Q 018775 188 QSLADVGGGTGGALAEIVKSYPHIK-GINFDL-PHVVATAPV-CEGIFHVGGDMFD-A---I-------PKADAVFMKWI 253 (350)
Q Consensus 188 ~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~---~-------p~~D~i~~~~v 253 (350)
.+++|+-||.|.++..+.++. .+ +..+|. +.+++..+. .....++.+|+.+ . + +.+|+++...=
T Consensus 3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 589999999999999999874 44 457787 666654443 3456778888876 2 1 35899998655
Q ss_pred hccCC--------hHHHHHHHH---HHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH
Q 018775 254 LHDWD--------DEACVKILK---NCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM 322 (350)
Q Consensus 254 lh~~~--------~~~~~~~L~---~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~ 322 (350)
...++ |+ ...++. ++.+.++ | +++++|.+..-... ......+++.
T Consensus 81 CQ~fS~ag~~~~~d~-r~~L~~~~~~~v~~~~-P--~~~v~ENV~gl~s~--------------------~~~~~~~~i~ 136 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDS-RNQLYMHFYRLVSELQ-P--LFFLAENVPGIMQE--------------------KYSGIRNKAF 136 (376)
T ss_dssp CCTTC-------CHH-HHHHHHHHHHHHHHHC-C--SEEEEEECTTTTCG--------------------GGHHHHHHHH
T ss_pred CCCcccccCCCCCCc-hHHHHHHHHHHHHHhC-C--CEEEEecchHhhcc--------------------CcHHHHHHHH
Confidence 44443 22 223333 3334446 6 67777766533110 1111256777
Q ss_pred HHHHhcCCce
Q 018775 323 KLLEQGGFHR 332 (350)
Q Consensus 323 ~ll~~aGf~~ 332 (350)
.|++.||.+
T Consensus 137 -~l~~~GY~v 145 (376)
T 3g7u_A 137 -NLVSGDYDI 145 (376)
T ss_dssp -HHHHTTEEE
T ss_pred -HHHcCCCcc
Confidence 889999987
|
| >2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=89.64 E-value=0.24 Score=37.61 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=33.1
Q ss_pred CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 45 PITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 45 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+.|.++||+++++ ++..+.+.|+.|+..|+|.+..
T Consensus 51 ~ps~~~LA~~l~~---s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 51 FPTPAELAERMTV---SAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp SCCHHHHHHTSSS---CHHHHHHHHHHHHHTTSSEECC
T ss_pred CCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 4799999999999 8999999999999999999985
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=89.61 E-value=0.98 Score=40.53 Aligned_cols=125 Identities=13% Similarity=0.102 Sum_probs=72.9
Q ss_pred cceEEEecCCchHHHHHHHHHCCCC-cEEEecc-hhHhhhCCC-CCCeEEEeccCCC-C---CC--CccEEEecchhccC
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHI-KGINFDL-PHVVATAPV-CEGIFHVGGDMFD-A---IP--KADAVFMKWILHDW 257 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~---~p--~~D~i~~~~vlh~~ 257 (350)
..+|+|+-||.|.++..+.++.-.. .+..+|. +.+++..+. .....++.+|+.+ . ++ .+|+++...=...+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence 4689999999999999999874222 4577787 666665543 2344577888887 2 23 58999986544433
Q ss_pred ChH--------HHHHHHHHHHhhCCCCC--ceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHh
Q 018775 258 DDE--------ACVKILKNCRQAIPDKS--GKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQ 327 (350)
Q Consensus 258 ~~~--------~~~~~L~~~~~~L~~pg--G~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~ 327 (350)
+.. ..-.++.++.++++.-. -+++++|.+..-. . + .+.+.+.+.|++
T Consensus 82 S~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~l~--------------------~-~--~~~~~i~~~l~~ 138 (343)
T 1g55_A 82 TRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFE--------------------V-S--STRDLLIQTIEN 138 (343)
T ss_dssp --------------CHHHHHHHHGGGCSSCCSEEEEEEETTGG--------------------G-S--HHHHHHHHHHHH
T ss_pred hhcCCcCCccCccchHHHHHHHHHHHhcCCCCEEEEeCCcccc--------------------C-H--HHHHHHHHHHHH
Confidence 311 11123444444443011 3566666554210 0 1 135778888999
Q ss_pred cCCceeE
Q 018775 328 GGFHRCK 334 (350)
Q Consensus 328 aGf~~~~ 334 (350)
.||.+..
T Consensus 139 ~GY~v~~ 145 (343)
T 1g55_A 139 CGFQYQE 145 (343)
T ss_dssp TTEEEEE
T ss_pred CCCeeEE
Confidence 9987654
|
| >3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2 | Back alignment and structure |
|---|
Probab=89.59 E-value=0.2 Score=42.26 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=44.0
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.|..++|+++++ ++..+.+.++.|+..|+|.+.... -...+.+|+.+..+.
T Consensus 26 ~~~s~s~aA~~L~i---sq~avSr~I~~LE~~~L~~R~~~~---R~~~v~LT~~G~~l~ 78 (230)
T 3cta_A 26 AYLTSSKLADMLGI---SQQSASRIIIDLEKNGYITRTVTK---RGQILNITEKGLDVL 78 (230)
T ss_dssp EECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEEET---TEEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEEEcC---CeEEEEECHHHHHHH
Confidence 57999999999999 899999999999999999998210 015788998887555
|
| >4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=89.32 E-value=0.48 Score=35.33 Aligned_cols=71 Identities=14% Similarity=0.215 Sum_probs=49.9
Q ss_pred HHHHHhcChhhhhhhCCCCCCHHHHHhhc------CCCCCCcccHHHHHHHhhcCCceeecccC-CCCC-CCeEecChhc
Q 018775 27 LKSAVELRLADIMHSHGSPITLPQLASRI------DSSCPDIPYLARLMRMLVRKGIFAVHQSS-DGGD-ETLYKMTHIS 98 (350)
Q Consensus 27 l~~~~~lglfd~L~~~~~~~t~~ela~~~------~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-~~~~-~~~~~~t~~s 98 (350)
++-.+++-|+..|.. +|.+.-+|++.+ ++ ++..+...|+.|+..|+|+..... .+++ .-.|++|+.+
T Consensus 8 ~~g~l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~i---s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G 82 (117)
T 4esf_A 8 LKGSLEGCVLEIISR--RETYGYEITRHLNDLGFTEV---VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAG 82 (117)
T ss_dssp HHHHHHHHHHHHHHH--SCBCHHHHHHHHHHHTCTTC---CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHH
T ss_pred HHChHHHHHHHHHHc--CCCCHHHHHHHHHHcCCCCC---CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHH
Confidence 334444455556665 799999999987 66 889999999999999999986421 1111 2358999988
Q ss_pred hhhh
Q 018775 99 KWLL 102 (350)
Q Consensus 99 ~~l~ 102 (350)
+...
T Consensus 83 ~~~l 86 (117)
T 4esf_A 83 RQEL 86 (117)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7443
|
| >3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=89.26 E-value=0.31 Score=36.36 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=52.7
Q ss_pred HHHHHHHhcChhhhhhhCCCCCCHHHHHhhcC------CCCCCcccHHHHHHHhhcCCceeeccc-CCCCC-CCeEecCh
Q 018775 25 MALKSAVELRLADIMHSHGSPITLPQLASRID------SSCPDIPYLARLMRMLVRKGIFAVHQS-SDGGD-ETLYKMTH 96 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~------~~~~~~~~l~~~L~~L~~~g~l~~~~~-~~~~~-~~~~~~t~ 96 (350)
.+++-.+++-|+..|.. +|.+.-+|++.+. + ++..+...|+.|+..|+|+.... ..+++ ...|++|+
T Consensus 9 ~l~~g~l~~~IL~lL~~--~p~~gyel~~~l~~~~~~~i---~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~ 83 (117)
T 3elk_A 9 RILHGLITLYILKELVK--RPMHGYELQKSMFETTGQAL---PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITD 83 (117)
T ss_dssp HHHHHHHHHHHHHHHHH--SCEEHHHHHHHHHHHHSCCC---CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECH
T ss_pred HHHhhHHHHHHHHHHHc--CCCCHHHHHHHHHHHhCCCC---CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECH
Confidence 34455566666777776 7999999998876 6 67899999999999999997642 11111 23599999
Q ss_pred hchhhh
Q 018775 97 ISKWLL 102 (350)
Q Consensus 97 ~s~~l~ 102 (350)
.++...
T Consensus 84 ~G~~~l 89 (117)
T 3elk_A 84 AGKKFL 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887443
|
| >2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8 | Back alignment and structure |
|---|
Probab=89.12 E-value=0.074 Score=48.05 Aligned_cols=62 Identities=10% Similarity=0.051 Sum_probs=0.0
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhhc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLH 103 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~~ 103 (350)
-+..++..|... +++|..|||+.+++ ++..++|.|+.|...|++.+.. ....+|+.+..+..
T Consensus 21 r~~~iL~~l~~~-~~~t~~eLa~~l~v---s~~Tv~r~l~~Le~~Glv~~~~-------~gi~LT~~G~~~~~ 82 (345)
T 2o0m_A 21 ERFQILRNIYWM-QPIGRRSLSETMGI---TERVLRTETDVLKQLNLIEPSK-------SGMTLTERGLEVYQ 82 (345)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe-------cceEEcHHHHHHHH
Confidence 346677777665 69999999999999 8899999999999999998553 34678887775553
|
| >1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A | Back alignment and structure |
|---|
Probab=89.07 E-value=0.13 Score=38.70 Aligned_cols=51 Identities=14% Similarity=0.190 Sum_probs=39.7
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCC-CCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSS-CPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~-~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.++.++..|-.. +|+|..|||+.++.. +.+...+.++|+-|+..|+|.+..
T Consensus 11 ~q~~vL~~L~~~-~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 11 AEWDVMNIIWDK-KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHHHS-SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhc-CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 345556666554 699999999999731 006789999999999999999986
|
| >2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=88.72 E-value=0.32 Score=36.49 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=42.5
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecC
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMT 95 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t 95 (350)
...|.+.+.. .|.++.++|+.+++ ++..+..+|+.|+..|.+.+-. .+.|.++
T Consensus 9 ~~~i~~~~~~--~p~~~~~la~~~~~---~~~~~~~~l~~l~~~G~l~~i~------~~~~~~~ 61 (121)
T 2pjp_A 9 WQKAEPLFGD--EPWWVRDLAKETGT---DEQAMRLTLRQAAQQGIITAIV------KDRYYRN 61 (121)
T ss_dssp HHHHGGGCSS--SCEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEE------TTEEEEH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec------CCceECH
Confidence 3445566654 57799999999999 8899999999999999999987 4666533
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=88.65 E-value=6.9 Score=30.10 Aligned_cols=91 Identities=18% Similarity=0.153 Sum_probs=53.4
Q ss_pred CCcceEEEecCCc-hHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-C------CCCccEEEecchhc
Q 018775 185 DSIQSLADVGGGT-GGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-A------IPKADAVFMKWILH 255 (350)
Q Consensus 185 ~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~------~p~~D~i~~~~vlh 255 (350)
....+|+=+|||. |......+... +.+++++|. ++.++.++....+.++.+|..+ . ..++|+|+..-
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~-g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~--- 92 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSS-GHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFT--- 92 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECS---
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEe---
Confidence 4567899999873 54444444443 468889988 7777776622345566677644 1 23488887642
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
+++.....+..+.+.+. |..+++.
T Consensus 93 --~~~~~~~~~~~~~~~~~-~~~~iv~ 116 (155)
T 2g1u_A 93 --NDDSTNFFISMNARYMF-NVENVIA 116 (155)
T ss_dssp --SCHHHHHHHHHHHHHTS-CCSEEEE
T ss_pred --CCcHHHHHHHHHHHHHC-CCCeEEE
Confidence 23333344445555556 6555543
|
| >3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A* | Back alignment and structure |
|---|
Probab=88.57 E-value=0.63 Score=34.55 Aligned_cols=73 Identities=14% Similarity=0.267 Sum_probs=51.2
Q ss_pred HHHHHHHhcChhhhhhhCCCCCCHHHHHhhc--------CCCCCCcccHHHHHHHhhcCCceeecccC-CCCC-CCeEec
Q 018775 25 MALKSAVELRLADIMHSHGSPITLPQLASRI--------DSSCPDIPYLARLMRMLVRKGIFAVHQSS-DGGD-ETLYKM 94 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~~~~t~~ela~~~--------~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-~~~~-~~~~~~ 94 (350)
..++-.+++=|+..|.+ +|.+--+|++.+ ++ ++..+.+.|+.|+..|+|+..... ..++ ...|++
T Consensus 7 ~~~~g~l~~~IL~~L~~--~~~~Gyei~~~l~~~~~~~~~i---~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~L 81 (116)
T 3f8b_A 7 EMLRAQTNVILLNVLKQ--GDNYVYGIIKQVKEASNGEMEL---NEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRL 81 (116)
T ss_dssp HHHHHHHHHHHHHHHHH--CCBCHHHHHHHHHHHTTTCCCC---CHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEE
T ss_pred HHHhchHHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCCC---CcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEE
Confidence 34444455556667766 799999999887 56 889999999999999999986311 1111 235899
Q ss_pred Chhchhhh
Q 018775 95 THISKWLL 102 (350)
Q Consensus 95 t~~s~~l~ 102 (350)
|+.++...
T Consensus 82 T~~G~~~l 89 (116)
T 3f8b_A 82 TEIGHENM 89 (116)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 98887443
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=88.32 E-value=1.6 Score=38.89 Aligned_cols=120 Identities=14% Similarity=0.104 Sum_probs=72.3
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCc-EEEecc-hhHhhhCCC--CCCeEEEeccCCC----CCCCccEEEecchhccCC
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIK-GINFDL-PHVVATAPV--CEGIFHVGGDMFD----AIPKADAVFMKWILHDWD 258 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~----~~p~~D~i~~~~vlh~~~ 258 (350)
..+++|+-||.|.++..+.++. .+ +..+|. +.+++..+. .... .+|+.+ ..+.+|+++...=...++
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG--~~~v~~~e~d~~a~~t~~~N~~~~~---~~Di~~~~~~~~~~~D~l~~gpPCQ~fS 85 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGEKP---EGDITQVNEKTIPDHDILCAGFPCQAFS 85 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSCCC---BSCGGGSCGGGSCCCSEEEEECCCTTTC
T ss_pred CCcEEEECCCcCHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHcCCCC---cCCHHHcCHhhCCCCCEEEECCCCCCcc
Confidence 5799999999999999998864 43 455777 665554432 1111 577776 245699998864443332
Q ss_pred ---------hHH---HHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHH
Q 018775 259 ---------DEA---CVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLE 326 (350)
Q Consensus 259 ---------~~~---~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~ 326 (350)
|+. ...+++ +.+.++ | +++++|.+..-.. . ......+.+.+.|+
T Consensus 86 ~ag~~~g~~d~r~~L~~~~~r-~i~~~~-P--~~~~~ENV~gl~~------------------~--~~~~~~~~i~~~l~ 141 (327)
T 2c7p_A 86 ISGKQKGFEDSRGTLFFDIAR-IVREKK-P--KVVFMENVKNFAS------------------H--DNGNTLEVVKNTMN 141 (327)
T ss_dssp TTSCCCGGGSTTSCHHHHHHH-HHHHHC-C--SEEEEEEEGGGGT------------------G--GGGHHHHHHHHHHH
T ss_pred hhcccCCCcchhhHHHHHHHH-HHHhcc-C--cEEEEeCcHHHHh------------------c--cccHHHHHHHHHHH
Confidence 111 122333 333456 6 5777776653211 0 11224678888999
Q ss_pred hcCCceeEE
Q 018775 327 QGGFHRCKI 335 (350)
Q Consensus 327 ~aGf~~~~~ 335 (350)
+.||.+...
T Consensus 142 ~~GY~v~~~ 150 (327)
T 2c7p_A 142 ELDYSFHAK 150 (327)
T ss_dssp HTTBCCEEE
T ss_pred hCCCEEEEE
Confidence 999976543
|
| >2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ... | Back alignment and structure |
|---|
Probab=88.28 E-value=0.28 Score=41.23 Aligned_cols=49 Identities=18% Similarity=0.298 Sum_probs=42.5
Q ss_pred CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 45 PITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 45 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+.+..+||+.+++ ++..+.+.|+.|+..|++.+.. ...+.+|+.++.+.
T Consensus 24 ~~~~~~la~~l~v---s~~tvs~~l~~Le~~GlV~r~~------~~~v~LT~~G~~~~ 72 (226)
T 2qq9_A 24 TPLRARIAERLEQ---SGPTVSQTVARMERDGLVVVAS------DRSLQMTPTGRTLA 72 (226)
T ss_dssp CCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT------TSBEEECHHHHHHH
T ss_pred CccHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeC------CCCeEECHHHHHHH
Confidence 4456999999999 8899999999999999999986 56799999887554
|
| >1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 | Back alignment and structure |
|---|
Probab=88.25 E-value=0.29 Score=33.43 Aligned_cols=37 Identities=11% Similarity=0.137 Sum_probs=33.5
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+.+++.++|+.+++. ..+++..+++.|++.|++++..
T Consensus 29 ~~i~l~~aa~~L~v~--~kRRiYDI~NVLe~igli~K~~ 65 (76)
T 1cf7_A 29 GVLDLKLAADTLAVR--QKRRIYDITNVLEGIGLIEKKS 65 (76)
T ss_dssp TEEEHHHHHHHTTTC--CTHHHHHHHHHHHHHTSEEEEE
T ss_pred CcCcHHHHHHHhCCc--cceehhhHHHHHhHhcceeecC
Confidence 678999999999992 4689999999999999999986
|
| >2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=88.13 E-value=0.18 Score=39.51 Aligned_cols=51 Identities=14% Similarity=0.345 Sum_probs=41.9
Q ss_pred HHHhcChhhhhhhCC-CCCCHHHHHhhc-----CCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 29 SAVELRLADIMHSHG-SPITLPQLASRI-----DSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 29 ~~~~lglfd~L~~~~-~~~t~~ela~~~-----~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+-.+.-|++.|...+ ++.|++||.+.+ ++ +..-+.|.|+.|+..|+|.+..
T Consensus 16 T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i---s~aTVYR~L~~L~e~Glv~~~~ 72 (150)
T 2w57_A 16 TLPRLKILEVLQQPECQHISAEELYKKLIDLGEEI---GLATVYRVLNQFDDAGIVTRHH 72 (150)
T ss_dssp CHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHCCcEEEEE
Confidence 345566788886544 589999999988 56 7889999999999999999875
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=87.93 E-value=0.58 Score=40.13 Aligned_cols=92 Identities=18% Similarity=0.277 Sum_probs=63.1
Q ss_pred CcceEEEecCCchHHHHHHHHH-------CCCCcEEEecc----hhH------------------------hh-------
Q 018775 186 SIQSLADVGGGTGGALAEIVKS-------YPHIKGINFDL----PHV------------------------VA------- 223 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~D~----~~~------------------------~~------- 223 (350)
-...|+|+|+-.|..+..+++. .++.++.++|. |+. ++
T Consensus 69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 3569999999999988886652 46788888882 211 00
Q ss_pred hCCC----CCCeEEEeccCCCCC-------C--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 224 TAPV----CEGIFHVGGDMFDAI-------P--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 224 ~a~~----~~~i~~~~~d~~~~~-------p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
..+. .++|+++.|++.+.. | .+|++.+=.=. -+.....+..+...|+ |||.+++
T Consensus 149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~----Y~~t~~~le~~~p~l~-~GGvIv~ 215 (257)
T 3tos_A 149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL----YEPTKAVLEAIRPYLT-KGSIVAF 215 (257)
T ss_dssp TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC----HHHHHHHHHHHGGGEE-EEEEEEE
T ss_pred hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc----cchHHHHHHHHHHHhC-CCcEEEE
Confidence 0011 378999999998721 2 37888774311 1234577999999999 9998876
|
| >2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66 | Back alignment and structure |
|---|
Probab=87.91 E-value=0.34 Score=35.18 Aligned_cols=45 Identities=11% Similarity=0.268 Sum_probs=36.5
Q ss_pred ChhhhhhhCCCCC-CHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 34 RLADIMHSHGSPI-TLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 34 glfd~L~~~~~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.|+..|.. ++.+ |..+||+.+|+ +...+++-|+.|...|+|....
T Consensus 32 ~I~~~l~~-g~~lps~~eLa~~lgV---Sr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 32 HIFEELDG-NEGLLVASKIADRVGI---TRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp HHTTSSBT-TEEEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhhhcC-CCcCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEEe
Confidence 34444543 2455 99999999999 8899999999999999999875
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=87.78 E-value=1.8 Score=38.33 Aligned_cols=89 Identities=17% Similarity=0.098 Sum_probs=54.9
Q ss_pred cceEEEecCCc-h-HHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-CCCCccEEEecchhccCChHHH
Q 018775 187 IQSLADVGGGT-G-GALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-AIPKADAVFMKWILHDWDDEAC 262 (350)
Q Consensus 187 ~~~vLDvG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~p~~D~i~~~~vlh~~~~~~~ 262 (350)
..+|.=||+|. | .++..|.+.....+++++|. ++.++.+.+..-+.-...|..+ .....|+|++. .+....
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVila-----vp~~~~ 107 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTF 107 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEEC-----SCGGGH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEe-----CCHHHH
Confidence 46899999883 3 34445555533337899998 6666655432222112233333 34468999874 345556
Q ss_pred HHHHHHHHhhCCCCCceEE
Q 018775 263 VKILKNCRQAIPDKSGKLV 281 (350)
Q Consensus 263 ~~~L~~~~~~L~~pgG~ll 281 (350)
..+++++...++ |+..++
T Consensus 108 ~~vl~~l~~~l~-~~~iv~ 125 (314)
T 3ggo_A 108 REIAKKLSYILS-EDATVT 125 (314)
T ss_dssp HHHHHHHHHHSC-TTCEEE
T ss_pred HHHHHHHhhccC-CCcEEE
Confidence 788999999999 886443
|
| >1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=87.75 E-value=0.25 Score=38.42 Aligned_cols=71 Identities=13% Similarity=0.114 Sum_probs=50.9
Q ss_pred HHHHHhcChhhhhhhCCCCCCHHHHHhhc--------CCCCCCcccHHHHHHHhhcCCceeecccC-CCC-CCCeEecCh
Q 018775 27 LKSAVELRLADIMHSHGSPITLPQLASRI--------DSSCPDIPYLARLMRMLVRKGIFAVHQSS-DGG-DETLYKMTH 96 (350)
Q Consensus 27 l~~~~~lglfd~L~~~~~~~t~~ela~~~--------~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-~~~-~~~~~~~t~ 96 (350)
+.--.++-|+..|.. +|.+.-||++.+ ++ ++..+.+.|+.|+..|+|.+.... ..+ ..-.|++|+
T Consensus 38 ~~g~~~~~IL~~L~~--~~~~gyeI~~~l~~~~~~~~~i---s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~ 112 (145)
T 1xma_A 38 IRGYVDTIILSLLIE--GDSYGYEISKNIRIKTDELYVI---KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITP 112 (145)
T ss_dssp GGGTHHHHHHHHHHH--CCEEHHHHHHHHHHHHTTSCCC---CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECH
T ss_pred hcCcHHHHHHHHHHh--CCCCHHHHHHHHHHhhCCccCc---ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECH
Confidence 344456666777765 689999988887 47 889999999999999999886421 001 123589998
Q ss_pred hchhhh
Q 018775 97 ISKWLL 102 (350)
Q Consensus 97 ~s~~l~ 102 (350)
.++.+.
T Consensus 113 ~G~~~l 118 (145)
T 1xma_A 113 EGIKYY 118 (145)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887443
|
| >2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2 | Back alignment and structure |
|---|
Probab=87.18 E-value=0.52 Score=38.63 Aligned_cols=49 Identities=20% Similarity=0.179 Sum_probs=42.6
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+|++..+||+.+++ .++.++..++-|...|+++.+. +...+|+.+..+.
T Consensus 29 ~~V~~~~LA~~Lgv---S~~SV~~~lkkL~e~GLV~~~~-------~Gv~LTe~G~~~A 77 (200)
T 2p8t_A 29 EPLGRKQISERLEL---GEGSVRTLLRKLSHLDIIRSKQ-------RGHFLTLKGKEIR 77 (200)
T ss_dssp SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC---------CEEECHHHHHHH
T ss_pred CCccHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEeC-------CCeEECHHHHHHH
Confidence 58999999999999 8899999999999999999986 6788998887544
|
| >1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* | Back alignment and structure |
|---|
Probab=86.73 E-value=0.46 Score=42.30 Aligned_cols=56 Identities=13% Similarity=0.133 Sum_probs=44.4
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHI 97 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~ 97 (350)
..+++.|.+. +++|.+|||+.+++ ++..++|-|+.|...|++.+... +..|++.+.
T Consensus 8 ~~Il~~L~~~-~~~s~~eLa~~l~v---S~~ti~r~l~~L~~~G~~i~~~~-----g~GY~l~~~ 63 (321)
T 1bia_A 8 LKLIALLANG-EFHSGEQLGETLGM---SRAAINKHIQTLRDWGVDVFTVP-----GKGYSLPEP 63 (321)
T ss_dssp HHHHHHHTTS-SCBCHHHHHHHHTS---CHHHHHHHHHHHHHTTCCCEEET-----TTEEECSSC
T ss_pred HHHHHHHHcC-CCcCHHHHHHHHCC---CHHHHHHHHHHHHhCCCcEEEec-----CCCcEEeec
Confidence 3466777653 68999999999999 89999999999999999865432 357887643
|
| >3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=86.72 E-value=0.53 Score=34.75 Aligned_cols=36 Identities=6% Similarity=0.201 Sum_probs=32.8
Q ss_pred CCC-CHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPI-TLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
..+ |..+||+.+|+ +..-+++-|+.|...|++....
T Consensus 31 ~~lPs~~~La~~~~v---Sr~tvr~al~~L~~~Gli~~~~ 67 (113)
T 3tqn_A 31 EMIPSIRKISTEYQI---NPLTVSKAYQSLLDDNVIEKRR 67 (113)
T ss_dssp CEECCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred CcCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 455 89999999999 8899999999999999999886
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=86.62 E-value=1.7 Score=38.76 Aligned_cols=124 Identities=17% Similarity=0.158 Sum_probs=76.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcE--EEecc-hhHhhhCCC--CCCeEEEeccCCC-C---CC--CccEEEecch
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKG--INFDL-PHVVATAPV--CEGIFHVGGDMFD-A---IP--KADAVFMKWI 253 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~--~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~---~p--~~D~i~~~~v 253 (350)
....+++|+-||.|.+...+.+..-..++ ..+|. +.+++..+. ... ++.+|+.+ . ++ .+|+++...=
T Consensus 8 ~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~--~~~~DI~~~~~~~i~~~~~Dil~ggpP 85 (327)
T 3qv2_A 8 QKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE--VQVKNLDSISIKQIESLNCNTWFMSPP 85 (327)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC--CBCCCTTTCCHHHHHHTCCCEEEECCC
T ss_pred CCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC--cccCChhhcCHHHhccCCCCEEEecCC
Confidence 34679999999999999999887432343 57888 666554432 222 56788877 2 23 4899997644
Q ss_pred hccC-----------ChHHHHHHHHHHHh-hCCCC---CceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCH
Q 018775 254 LHDW-----------DDEACVKILKNCRQ-AIPDK---SGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTE 318 (350)
Q Consensus 254 lh~~-----------~~~~~~~~L~~~~~-~L~~p---gG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 318 (350)
...+ .|+. -.++.++.+ +++ - .-+++++|.+..-. . + .+.
T Consensus 86 CQ~fs~S~ag~~~~~~d~r-~~L~~~~~r~~i~-~~~~~P~~~~lENV~gl~--------------------~-~--~~~ 140 (327)
T 3qv2_A 86 CQPYNNSIMSKHKDINDPR-AKSVLHLYRDILP-YLINKPKHIFIENVPLFK--------------------E-S--LVF 140 (327)
T ss_dssp CTTCSHHHHTTTCTTTCGG-GHHHHHHHHTTGG-GCSSCCSEEEEEECGGGG--------------------G-S--HHH
T ss_pred ccCcccccCCCCCCCcccc-chhHHHHHHHHHH-HhccCCCEEEEEchhhhc--------------------C-h--HHH
Confidence 4444 2222 234444444 332 1 23677777654210 0 1 135
Q ss_pred HHHHHHHHhcCCceeEE
Q 018775 319 QEWMKLLEQGGFHRCKI 335 (350)
Q Consensus 319 ~e~~~ll~~aGf~~~~~ 335 (350)
+.+.+.|++.||.+...
T Consensus 141 ~~i~~~l~~~GY~v~~~ 157 (327)
T 3qv2_A 141 KEIYNILIKNQYYIKDI 157 (327)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHhCCCEEEEE
Confidence 78888899999986544
|
| >3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=86.42 E-value=0.32 Score=35.66 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=47.5
Q ss_pred HHhcChhhhhhhCCCCCCHHHHHhhc----CCCCCCcccHHHHHHHhhcCCceeecccCCCCC-CCeEecChhchhhh
Q 018775 30 AVELRLADIMHSHGSPITLPQLASRI----DSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGD-ETLYKMTHISKWLL 102 (350)
Q Consensus 30 ~~~lglfd~L~~~~~~~t~~ela~~~----~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~-~~~~~~t~~s~~l~ 102 (350)
.+++-|+..|.. +|.+.-+|++.+ ++ ++..+.+.|+.|+..|+|+......++. ...|++|+.++...
T Consensus 9 ~l~~~IL~~L~~--~~~~gyel~~~l~~~~~i---~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l 81 (108)
T 3l7w_A 9 LIEYLILAIVSK--HDSYGYDISQTIKLIASI---KESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHL 81 (108)
T ss_dssp HHHHHHHHHHHH--SCEEHHHHHHHHTTTCCC---CHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCcHHHHHHHHHHHhCC---CcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHH
Confidence 345555666665 688877777764 78 8899999999999999999864211111 12488998887443
|
| >1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=86.03 E-value=0.68 Score=37.27 Aligned_cols=63 Identities=11% Similarity=0.229 Sum_probs=47.2
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhc--------CCCCCCcccHHHHHHHhhcCCceeecccCC-CC-CCCeEecChhch
Q 018775 32 ELRLADIMHSHGSPITLPQLASRI--------DSSCPDIPYLARLMRMLVRKGIFAVHQSSD-GG-DETLYKMTHISK 99 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~--------~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~-~~-~~~~~~~t~~s~ 99 (350)
++-|+..|.. +|.+.-||++.+ ++ +...+.+.|+-|+..|+|+...... ++ +...|++|+.++
T Consensus 4 ~~~iL~lL~~--~~~~gyel~~~l~~~~~~~~~~---s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~ 76 (179)
T 1yg2_A 4 PHVILTVLST--RDATGYDITKEFSASIGYFWKA---SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGR 76 (179)
T ss_dssp HHHHHHHHHH--CCBCHHHHHHHHTTGGGGTCCC---CHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHH
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHhCCccCC---CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHH
Confidence 4456677776 799999999998 46 7899999999999999999764321 11 123599999886
|
| >2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A | Back alignment and structure |
|---|
Probab=86.01 E-value=0.93 Score=34.35 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=38.8
Q ss_pred HHHHHHhcChhhhhhhCCCCC-CHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 26 ALKSAVELRLADIMHSHGSPI-TLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 26 ~l~~~~~lglfd~L~~~~~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.|...+..|-+. . |..+ |..+||+.+|+ +..-+++-|+.|...|++....
T Consensus 12 ~i~~~I~~g~l~---~-G~~LPse~~La~~~gv---Sr~tVr~Al~~L~~~Gli~~~~ 62 (129)
T 2ek5_A 12 LIEDSIVDGTLS---I-DQRVPSTNELAAFHRI---NPATARNGLTLLVEAGILYKKR 62 (129)
T ss_dssp HHHHHHHTTSSC---T-TSCBCCHHHHHHHTTC---CHHHHHHHHHHHHTTTSEEEET
T ss_pred HHHHHHHhCCCC---C-CCcCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCcEEEec
Confidence 344444445443 1 2456 89999999999 8899999999999999999886
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=86.01 E-value=3.1 Score=31.59 Aligned_cols=87 Identities=16% Similarity=0.136 Sum_probs=53.0
Q ss_pred cceEEEecCCc-hHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCC-------CCCccEEEecchhccC
Q 018775 187 IQSLADVGGGT-GGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDA-------IPKADAVFMKWILHDW 257 (350)
Q Consensus 187 ~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~p~~D~i~~~~vlh~~ 257 (350)
..+|+=+|||. |......+.+ .+..++++|. ++.++.+++ ..+.++.+|..++ ...+|++++.-
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~-~g~~v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~----- 79 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLA-SDIPLVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTI----- 79 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECC-----
T ss_pred CCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEEC-----
Confidence 45788888873 4444444433 3568999998 777776653 4677889998762 12488877632
Q ss_pred C-hHHHHHHHHHHHhhCCCCCceEEE
Q 018775 258 D-DEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 258 ~-~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
+ +.....+.. ..+.+. |+.+++.
T Consensus 80 ~~~~~n~~~~~-~a~~~~-~~~~iia 103 (140)
T 3fwz_A 80 PNGYEAGEIVA-SARAKN-PDIEIIA 103 (140)
T ss_dssp SCHHHHHHHHH-HHHHHC-SSSEEEE
T ss_pred CChHHHHHHHH-HHHHHC-CCCeEEE
Confidence 2 223333344 444456 7776654
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=85.98 E-value=1.4 Score=43.41 Aligned_cols=121 Identities=20% Similarity=0.223 Sum_probs=71.2
Q ss_pred CcceEEEecCCchHHHHHHHHHC-------CC-----CcEEEecc-h---hHhhh-CC-----------------C----
Q 018775 186 SIQSLADVGGGTGGALAEIVKSY-------PH-----IKGINFDL-P---HVVAT-AP-----------------V---- 227 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~-------p~-----~~~~~~D~-~---~~~~~-a~-----------------~---- 227 (350)
+.-+|+|+|-|+|.......+.+ |+ ++++.++. | +.+.. .. .
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 45799999999998877665532 32 45777764 2 22221 00 0
Q ss_pred ---------CCCeEEEeccCCC--C-C-----CCccEEEecch-hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 228 ---------CEGIFHVGGDMFD--A-I-----PKADAVFMKWI-LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 228 ---------~~~i~~~~~d~~~--~-~-----p~~D~i~~~~v-lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
.-++++.-||+.+ + + ..+|++++--+ -..-|+--...++++++++++ |||++.-.
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~-~g~~~~t~------ 218 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLAR-PGGTLATF------ 218 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEE-EEEEEEES------
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhC-CCCEEEec------
Confidence 1234456677765 1 2 23898887321 111111113468999999999 99887520
Q ss_pred CCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcC
Q 018775 290 DGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMP 339 (350)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~ 339 (350)
.. ....++.|.++||.+.+....+
T Consensus 219 --------------------~~------~~~vr~~L~~aGf~v~~~~~~g 242 (676)
T 3ps9_A 219 --------------------TS------AGFVRRGLQDAGFTMQKRKGFG 242 (676)
T ss_dssp --------------------CC------CHHHHHHHHHHTCEEEEEECST
T ss_pred --------------------cC------cHHHHHHHHhCCeEEEeccccc
Confidence 00 2456777889999877655333
|
| >3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=85.55 E-value=0.45 Score=43.16 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=45.7
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEec
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKM 94 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~ 94 (350)
+..|++.|.. +|.++++|++++|+ +...+...|-.|+-.|++.+.. +++|++
T Consensus 330 ~~~vl~~l~~--~~~~~D~l~~~~gl---~~~~v~~~L~~LEl~G~v~~~~------Gg~~~~ 381 (382)
T 3maj_A 330 RTRILALLGP--SPVGIDDLIRLSGI---SPAVVRTILLELELAGRLERHG------GSLVSL 381 (382)
T ss_dssp HHHHHHHCCS--SCEEHHHHHHHHCC---CHHHHHHHHHHHHHTTCCEECT------TSEEEC
T ss_pred HHHHHHhhCC--CCCCHHHHHHHHCc---CHHHHHHHHHHHHhCCcEEeCC------CceEec
Confidence 4468899975 79999999999999 8899999999999999999997 577775
|
| >1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A* | Back alignment and structure |
|---|
Probab=85.23 E-value=0.67 Score=33.47 Aligned_cols=41 Identities=12% Similarity=0.210 Sum_probs=33.9
Q ss_pred HHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhh
Q 018775 28 KSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLV 73 (350)
Q Consensus 28 ~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~ 73 (350)
..+.++||+..|.. ++.|..|||+.+|+ +...+.|+=++|-
T Consensus 43 ~l~~R~~l~~~L~~--ge~TQREIA~~lGi---S~stISRi~r~L~ 83 (101)
T 1jhg_A 43 ALGTRVRIIEELLR--GEMSQRELKNELGA---GIATITRGSNSLK 83 (101)
T ss_dssp HHHHHHHHHHHHHH--CCSCHHHHHHHHCC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCcCHHHHHHHHCC---ChhhhhHHHHHHH
Confidence 34556999999986 68999999999999 7888888776664
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=85.08 E-value=0.77 Score=42.32 Aligned_cols=57 Identities=16% Similarity=0.146 Sum_probs=42.2
Q ss_pred CCCcceEEEecCCchHHHHHHH-HHCCC-CcEEEecc-hhHhhhCCC---------C-CCeEEEeccCCC
Q 018775 184 FDSIQSLADVGGGTGGALAEIV-KSYPH-IKGINFDL-PHVVATAPV---------C-EGIFHVGGDMFD 240 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~~a~~---------~-~~i~~~~~d~~~ 240 (350)
+.++..|+|||++.|.++..++ +..+. .+++.++. |...+..++ . .++++++.-+.+
T Consensus 224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~ 293 (409)
T 2py6_A 224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE 293 (409)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence 3678999999999999999988 56665 78999997 766554432 2 577777655444
|
| >1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1 | Back alignment and structure |
|---|
Probab=84.92 E-value=0.46 Score=44.74 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=48.1
Q ss_pred hcChhhhhhhCC-CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCC---eEecChhchhh
Q 018775 32 ELRLADIMHSHG-SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDET---LYKMTHISKWL 101 (350)
Q Consensus 32 ~lglfd~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~---~~~~t~~s~~l 101 (350)
++.++..|.+.+ +++|..|||+++++ +...+.|+|+.|+..|+|.+..... +. ...+|+.++.+
T Consensus 406 q~~vl~~l~~~~~~~~~~~~l~~~~~~---~~~~~t~~~~~le~~g~v~r~~~~~---D~R~~~i~lT~~g~~~ 473 (487)
T 1hsj_A 406 EIYILNHILRSESNEISSKEIAKCSEF---KPYYLTKALQKLKDLKLLSKKRSLQ---DERTVIVYVTDTQKAN 473 (487)
T ss_dssp HHHHHHHHHTCSCSEEEHHHHHHSSCC---CHHHHHHHHHHHHTTTTSCCEECCS---SSSCCEEECCSSHHHH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEeecCCCC---CCCeEEEEECHHHHHH
Confidence 356777776531 58999999999999 8999999999999999999875211 22 35666666543
|
| >3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A* | Back alignment and structure |
|---|
Probab=84.87 E-value=0.5 Score=42.10 Aligned_cols=58 Identities=7% Similarity=0.061 Sum_probs=44.5
Q ss_pred hcChhhhhhh-CCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChh
Q 018775 32 ELRLADIMHS-HGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHI 97 (350)
Q Consensus 32 ~lglfd~L~~-~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~ 97 (350)
+..+++.|.+ .+.++|.++||+.+|+ +...+.+-++.|...|+..+... +..|++.+.
T Consensus 5 ~~~iL~~L~~~~g~~~Sg~eLa~~lgv---Sr~aV~k~i~~L~~~G~~i~~~~-----~~GY~L~~~ 63 (323)
T 3rkx_A 5 SQDVLQLLYKNKPNYISGQSIAESLNI---SRTAVKKVIDQLKLEGCKIDSVN-----HKGHLLQQL 63 (323)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHHTS---CHHHHHHHHHHHHHTTCEEEEET-----TTEEEEEEC
T ss_pred HHHHHHHHHhCCCCccCHHHHHHHHCC---CHHHHHHHHHHHHhcCCeEEEeC-----CCeEEEecC
Confidence 3456777732 1258999999999999 89999999999999999655421 467887754
|
| >1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 | Back alignment and structure |
|---|
Probab=84.60 E-value=0.75 Score=39.29 Aligned_cols=65 Identities=11% Similarity=0.185 Sum_probs=48.8
Q ss_pred hcChhhhhhhCC-CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCC---eEecChhchhhh
Q 018775 32 ELRLADIMHSHG-SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDET---LYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~---~~~~t~~s~~l~ 102 (350)
++.++..|...+ +++|..|||+.+++ +...+.++|+-|+..|+|.+..... +. ...+|+.+..+.
T Consensus 36 q~~vL~~L~~~~~~~~~~~el~~~l~~---~~~t~t~~l~rLe~~G~i~R~~~~~---DrR~~~i~LT~~G~~~~ 104 (250)
T 1p4x_A 36 EFILLTYLFHQQENTLPFKKIVSDLCY---KQSDLVQHIKVLVKHSYISKVRSKI---DERNTYISISEEQREKI 104 (250)
T ss_dssp HHHHHHHHHSCSCSEEEHHHHHHHSSS---CGGGTHHHHHHHHHTTSCEEEECSS---STTSEEEECCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHCC---CHhhHHHHHHHHHHCCCEEecCCCC---CCCeEEEEECHHHHHHH
Confidence 355667775432 58999999999999 8999999999999999999875211 22 356777776543
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=83.50 E-value=2.1 Score=38.93 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=27.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-------CCCcEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-------PHIKGINFDL 218 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-------p~~~~~~~D~ 218 (350)
.+...+|+|+|+|.|.++..+++.. ..+++++++.
T Consensus 78 ~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~ 119 (387)
T 1zkd_A 78 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEI 119 (387)
T ss_dssp CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECC
T ss_pred CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEec
Confidence 3456789999999999999887642 3457888988
|
| >3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=83.18 E-value=1.2 Score=33.13 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=51.6
Q ss_pred HHHHHHHhcChhhhhhhCCCCCCHHHHHhhc------CCCCCCcccHHHHHHHhhcCCceeeccc-CCCCC-CCeEecCh
Q 018775 25 MALKSAVELRLADIMHSHGSPITLPQLASRI------DSSCPDIPYLARLMRMLVRKGIFAVHQS-SDGGD-ETLYKMTH 96 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~~~~t~~ela~~~------~~~~~~~~~l~~~L~~L~~~g~l~~~~~-~~~~~-~~~~~~t~ 96 (350)
.+++-.+++=|+..|.. +|.+--||++.+ ++ ++..+...|+.|+..|+|+.... ..+++ ...|++|+
T Consensus 8 ~l~~g~l~~~IL~lL~~--~p~~Gyei~~~l~~~g~~~i---s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~ 82 (116)
T 3hhh_A 8 ELLKGILEGLVLAIIQR--KETYGYEITKILNDQGFTEI---VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTS 82 (116)
T ss_dssp HHHTTHHHHHHHHHHHH--SCBCHHHHHHHHHTTSCSSC---CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECH
T ss_pred HHHhhhHHHHHHHHHhc--CCCCHHHHHHHHHHcCCCCC---CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECH
Confidence 34444455556666766 799999999987 56 88999999999999999997632 11111 23589999
Q ss_pred hchhhh
Q 018775 97 ISKWLL 102 (350)
Q Consensus 97 ~s~~l~ 102 (350)
.++...
T Consensus 83 ~G~~~l 88 (116)
T 3hhh_A 83 SGEAEL 88 (116)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887443
|
| >3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=82.81 E-value=0.97 Score=34.07 Aligned_cols=50 Identities=10% Similarity=0.138 Sum_probs=38.9
Q ss_pred HHHHHHhcChhhhhhhCCCCC-CHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 26 ALKSAVELRLADIMHSHGSPI-TLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 26 ~l~~~~~lglfd~L~~~~~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.|...+..|-+. . |..+ |..+||+.+|+ +..-+++-|+.|...|++....
T Consensus 19 ~l~~~I~~g~~~---~-G~~lPse~~La~~~~v---Sr~tvr~Al~~L~~~Gli~~~~ 69 (126)
T 3by6_A 19 RIKNEVATDVLS---A-NDQLPSVRETALQEKI---NPNTVAKAYKELEAQKVIRTIP 69 (126)
T ss_dssp HHHHHHHTTSSC---T-TCEECCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhCCCC---C-CCcCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEEec
Confidence 344444444443 1 2456 89999999999 8899999999999999999886
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=82.72 E-value=5.1 Score=34.52 Aligned_cols=88 Identities=14% Similarity=0.106 Sum_probs=52.2
Q ss_pred ceEEEecCCc-h-HHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCCCCCccEEEecchhccCChHHHHH
Q 018775 188 QSLADVGGGT-G-GALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDAIPKADAVFMKWILHDWDDEACVK 264 (350)
Q Consensus 188 ~~vLDvG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~p~~D~i~~~~vlh~~~~~~~~~ 264 (350)
.+|.=||+|. | .++..|.+..++.+++++|. ++..+.+.+...+.....|..+.....|+|++. .+......
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVila-----vp~~~~~~ 81 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILA-----VPIKKTID 81 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEEC-----SCHHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEc-----CCHHHHHH
Confidence 5788899884 3 33445555544668888997 655554432111111223333333458988874 34555577
Q ss_pred HHHHHHhh-CCCCCceEE
Q 018775 265 ILKNCRQA-IPDKSGKLV 281 (350)
Q Consensus 265 ~L~~~~~~-L~~pgG~ll 281 (350)
+++++... ++ |+..++
T Consensus 82 v~~~l~~~~l~-~~~ivi 98 (290)
T 3b1f_A 82 FIKILADLDLK-EDVIIT 98 (290)
T ss_dssp HHHHHHTSCCC-TTCEEE
T ss_pred HHHHHHhcCCC-CCCEEE
Confidence 88888888 88 775444
|
| >3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=82.63 E-value=0.46 Score=36.92 Aligned_cols=53 Identities=11% Similarity=0.157 Sum_probs=41.1
Q ss_pred HHHhcChhhhhhhCCCCCCHHHHHhhcCC--CCCCcccHHHHHHHhhcCCceeecc
Q 018775 29 SAVELRLADIMHSHGSPITLPQLASRIDS--SCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 29 ~~~~lglfd~L~~~~~~~t~~ela~~~~~--~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..+.-|++.|...+ +.|++||.+.+.- +..+..-+.|.|+.|+..|++.+..
T Consensus 18 T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~ 72 (145)
T 3eyy_A 18 TPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAH 72 (145)
T ss_dssp CHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEE
Confidence 345666788887654 8999999988721 1127789999999999999999875
|
| >2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus} | Back alignment and structure |
|---|
Probab=82.54 E-value=0.74 Score=35.39 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=39.9
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
-.+++.|.+ |+.|..+||+.+|+ +-..+.-.|..|+..|.+.+..
T Consensus 14 ~~ILE~Lk~--G~~~t~~Iak~LGl---Shg~aq~~Ly~LeREG~V~~Vk 58 (165)
T 2vxz_A 14 RDILALLAD--GCKTTSLIQQRLGL---SHGRAKALIYVLEKEGRVTRVA 58 (165)
T ss_dssp HHHHHHHTT--CCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHh--CCccHHHHHHHhCC---cHHHHHHHHHHHHhcCceEEEE
Confidence 346777773 89999999999999 7889999999999999999986
|
| >1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A | Back alignment and structure |
|---|
Probab=82.48 E-value=0.77 Score=42.19 Aligned_cols=51 Identities=6% Similarity=0.119 Sum_probs=42.6
Q ss_pred HHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 28 KSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 28 ~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..-+..|++.|... +++|..|||+.+|+ +...+.++++.|...|++.+.+
T Consensus 14 r~~n~~~il~~l~~~-~~~sr~~la~~~~l---s~~tv~~~v~~L~~~g~i~~~~ 64 (406)
T 1z6r_A 14 KQTNAGAVYRLIDQL-GPVSRIDLSRLAQL---APASITKIVHEMLEAHLVQELE 64 (406)
T ss_dssp HHHHHHHHHHHHHSS-CSCCHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEC-
T ss_pred HHhHHHHHHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEeec
Confidence 333444577888765 79999999999999 8899999999999999999865
|
| >2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=82.24 E-value=0.53 Score=42.93 Aligned_cols=71 Identities=15% Similarity=0.262 Sum_probs=49.3
Q ss_pred HHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccC--CCC-CCCeEecChhch
Q 018775 24 SMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSS--DGG-DETLYKMTHISK 99 (350)
Q Consensus 24 ~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~--~~~-~~~~~~~t~~s~ 99 (350)
.+.++..-+..|++.|. . +++|..|||+.+|+ +...+.++++.|...|++.+.+.. ..| +...|++++...
T Consensus 14 ~~~~~~~~~~~il~~l~-~-~~~sr~~la~~~gl---s~~tv~~~v~~L~~~gli~~~~~~~~~~GR~~~~l~~~~~~~ 87 (380)
T 2hoe_A 14 PKSVRAENISRILKRIM-K-SPVSRVELAEELGL---TKTTVGEIAKIFLEKGIVVEEKDSPKGVGRPTKSLKISPNCA 87 (380)
T ss_dssp --------CCCSHHHHH-H-SCBCHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEECCC----CCCEEEEECGGGC
T ss_pred chhHHHHHHHHHHHHHH-c-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeecCCCCCCCCCceEEEEccCCC
Confidence 45666677788999998 5 79999999999999 889999999999999999987531 111 223466666544
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=81.94 E-value=2.6 Score=33.98 Aligned_cols=88 Identities=13% Similarity=0.028 Sum_probs=55.8
Q ss_pred CCCcceEEEec--CCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-C--------C--CCccEE
Q 018775 184 FDSIQSLADVG--GGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-A--------I--PKADAV 248 (350)
Q Consensus 184 ~~~~~~vLDvG--~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~--------~--p~~D~i 248 (350)
..++.+||.+| +|.|..+..+++.. +.++++.+. ++..+.+++ .... .. |..+ + . ..+|++
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~g~~~-~~--d~~~~~~~~~~~~~~~~~~~D~v 111 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGVEY-VG--DSRSVDFADEILELTDGYGVDVV 111 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCCSE-EE--ETTCSTHHHHHHHHTTTCCEEEE
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCE-Ee--eCCcHHHHHHHHHHhCCCCCeEE
Confidence 56788999999 46788877777754 457888887 555544433 1111 11 2222 1 1 138888
Q ss_pred EecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 249 FMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 249 ~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
+.+- .. ..++.+.+.|+ |+|+++++-.
T Consensus 112 i~~~-----g~----~~~~~~~~~l~-~~G~~v~~g~ 138 (198)
T 1pqw_A 112 LNSL-----AG----EAIQRGVQILA-PGGRFIELGK 138 (198)
T ss_dssp EECC-----CT----HHHHHHHHTEE-EEEEEEECSC
T ss_pred EECC-----ch----HHHHHHHHHhc-cCCEEEEEcC
Confidence 7532 12 35788889999 9999988654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 350 | ||||
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 4e-78 | |
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 5e-73 | |
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 6e-70 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 5e-39 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 6e-35 | |
| d1fp2a1 | 101 | a.4.5.29 (A:8-108) Isoflavone O-methyltransferase | 3e-32 | |
| d1kyza1 | 107 | a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic | 1e-24 | |
| d1fp1d1 | 110 | a.4.5.29 (D:19-128) Chalcone O-methyltransferase { | 2e-24 | |
| d1qzza1 | 92 | a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase R | 3e-14 | |
| d1tw3a1 | 85 | a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransfer | 1e-11 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 8e-05 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 0.002 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 0.004 |
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 237 bits (606), Expect = 4e-78
Identities = 94/247 (38%), Positives = 141/247 (57%), Gaps = 7/247 (2%)
Query: 107 LSLAPMILVENNQWLLEPWHYLSQCVKEGGI-AFKKAHGCEIWDFASQSPQFNNLFNDAM 165
L LAPM+ + L +H L + + E + F G WDF ++P++N FNDAM
Sbjct: 1 LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAM 60
Query: 166 ACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATA 225
A +K++ AL FD ++S+ DVGGGTG I +++P +K I FD P VV
Sbjct: 61 ASDSKLINLALR-DCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL 119
Query: 226 PVCEGIFHVGGDMFDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIP--DKSGKLVLV 283
+ +VGGDMF +IP ADAV +K+ILH+W D+ C++ILK C++A+ K GK+ ++
Sbjct: 120 SGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTII 179
Query: 284 EIVVQEDGN-NIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALY 342
++V+ + + N + L+ D+ M GKER E+EW KL + GF KI +
Sbjct: 180 DMVIDKKKDENQVTQIKLLMDVNMACL--NGKERNEEEWKKLFIEAGFQHYKISPLTGFL 237
Query: 343 SIIEAYP 349
S+IE YP
Sbjct: 238 SLIEIYP 244
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 224 bits (572), Expect = 5e-73
Identities = 89/244 (36%), Positives = 136/244 (55%), Gaps = 6/244 (2%)
Query: 108 SLAPMILVENNQWLLEPWHYLSQCVKEGGI-AFKKAHGCEIWDFASQSPQFNNLFNDAMA 166
LA LL+ W + V + I FK HG ++F + + N +FN +M
Sbjct: 3 YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMV 62
Query: 167 CTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAP 226
MK ++ Y GF+ I +L DVGGG+G L I+ YP IKGINFDLP V+ AP
Sbjct: 63 DVCATEMKRMLEIY-TGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAP 121
Query: 227 VCEGIFHVGGDMFDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286
GI HVGGDMF ++P+ DA+ +K + H+W DE C++ L NC +A+ +GK+++VE +
Sbjct: 122 PLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALS-PNGKVIIVEFI 180
Query: 287 VQEDGN-NIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMP-ALYSI 344
+ E+ N + + D +MF T GG+ERTE+++ KL + GF + ++ +
Sbjct: 181 LPEEPNTSEESKLVSTLDNLMFI-TVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGV 239
Query: 345 IEAY 348
+E Y
Sbjct: 240 MEFY 243
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 216 bits (551), Expect = 6e-70
Identities = 105/240 (43%), Positives = 150/240 (62%), Gaps = 1/240 (0%)
Query: 107 LSLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMA 166
+S++ + L+ ++ L+E W++L V +GGI F KA+G +++ P+FN +FN M+
Sbjct: 3 VSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMS 62
Query: 167 CTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAP 226
+ I MK ++ Y GF+ ++SL DVGGGTG + IV YP IKGINFDLPHV+ AP
Sbjct: 63 DHSTITMKKILETY-TGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAP 121
Query: 227 VCEGIFHVGGDMFDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286
G+ HVGGDMF +IPKADAVFMKWI HDW DE C+K LKNC +A+PD +V I+
Sbjct: 122 SYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECIL 181
Query: 287 VQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSIIE 346
+++ + D++M AH GGKERT++E+ L + GF K+ I+E
Sbjct: 182 PVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIME 241
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 137 bits (345), Expect = 5e-39
Identities = 60/239 (25%), Positives = 95/239 (39%), Gaps = 18/239 (7%)
Query: 124 PWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDG 183
+ L V+ G A+ +G W+ S + F+ M+C + +A Y
Sbjct: 21 AFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-- 78
Query: 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEG--------IFHVG 235
+ +++ + DVGGG GG LA I PH++G +L A G
Sbjct: 79 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEG 138
Query: 236 GDMFDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIF 295
AD V + ++L +W DE + IL+ C +A+ LVL V+ DG + F
Sbjct: 139 DFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRF 198
Query: 296 GDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII-----SMPALYSIIEAYP 349
+ DL M GG+ RT E + L G ++P +SI+E
Sbjct: 199 --FSTLLDLRMLTF-MGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 254
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 126 bits (316), Expect = 6e-35
Identities = 51/239 (21%), Positives = 96/239 (40%), Gaps = 19/239 (7%)
Query: 124 PWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDG 183
+ L ++ G ++ +G ++ + P F+ +AC + A + Y
Sbjct: 20 SFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-- 77
Query: 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAP--------VCEGIFHVG 235
+ +++ + DVGGG GG A I + PH+ ++ V TA G
Sbjct: 78 WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEG 137
Query: 236 GDMFDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIF 295
KADA+ + ++L +W D V+IL C +A+ ++++ E + + F
Sbjct: 138 DFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGG-RILIHERDDLHENS--F 194
Query: 296 GDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALY-----SIIEAYP 349
+ DL M GG RT ++W L G ++ +P+ S++ P
Sbjct: 195 NEQFTELDLRMLVF-LGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 252
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 114 bits (286), Expect = 3e-32
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 5 EELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPY 64
E+ + QA +++ ++AF DSM+LK AVE+ + +I+ +HG PI+L L S + I
Sbjct: 4 SEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGN 63
Query: 65 LARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLLHDSE 106
+ RLMR L G F + + Y +T S+ L+ S+
Sbjct: 64 VRRLMRYLAHNGFFEIITKEEES----YALTVASELLVRGSD 101
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 94.5 bits (235), Expect = 1e-24
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 16 QLMFAFADSMALKSAVELRLADIMHSHGS--PITLPQLASRIDSSCPDIP-YLARLMRML 72
QL A M LKSA+EL L +I+ G I+ ++AS++ ++ PD P L R++R+L
Sbjct: 13 QLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLL 72
Query: 73 VRKGIFA--VHQSSDGGDETLYKMTHISKWLLHD 104
I V DG + LY + ++K+L+ +
Sbjct: 73 ACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKN 106
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 93.7 bits (233), Expect = 2e-24
Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Query: 13 EVWQLMFAFADSMALKSAVELRLADIMHSHGSP---ITLPQLASRIDSSC---PDIPYLA 66
L L +A++L L +I+ P ++ ++AS++ +S L
Sbjct: 9 SAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLD 68
Query: 67 RLMRMLVRKGIFAVHQ--SSDGGDETLYKMTHISKWLLHD 104
R++R+L + DGG E +Y ++ + K+L+ D
Sbjct: 69 RMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPD 108
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 92 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 65.2 bits (159), Expect = 3e-14
Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 9/93 (9%)
Query: 9 RGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARL 68
+ + + + MAL+ A LRL D + TL LA R D+ L+RL
Sbjct: 6 QDLDVLLKNLGNLVTPMALRVAATLRLVDHL--LAGADTLAGLADRTDT---HPQALSRL 60
Query: 69 MRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101
+R L G+ + T + L
Sbjct: 61 VRHLTVVGVLEG----GEKQGRPLRPTRLGMLL 89
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 85 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 57.9 bits (140), Expect = 1e-11
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 16 QLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRK 75
+ + M +++A LRL D + + T+ LA+R D+ L RL+R LV
Sbjct: 7 IRLGSLHTPMVVRTAATLRLVDHILAG--ARTVKALAARTDT---RPEALLRLIRHLVAI 61
Query: 76 GIFAVHQSSDGGDETLYKMTHISKWLLHD 104
G+ + T + + L D
Sbjct: 62 GLLEED------APGEFVPTEVGELLADD 84
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 41.1 bits (95), Expect = 8e-05
Identities = 19/157 (12%), Positives = 44/157 (28%), Gaps = 17/157 (10%)
Query: 192 DVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCE--------GIFHVGGDMFDAIP 243
D+G G G G++ V + + +
Sbjct: 22 DIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD 81
Query: 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFD 303
D + ++ H + D K ++ + + + G+ +LV+ ED + +
Sbjct: 82 SFDIITCRYAAHHFSD--VRKAVREVARVL-KQDGRFLLVDHYAPEDPV-----LDEFVN 133
Query: 304 LVM-FAHTTGGKERTEQEWMKLLEQGGFHRCKIISMP 339
+ + +E + EW + I
Sbjct: 134 HLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWN 170
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 37.3 bits (85), Expect = 0.002
Identities = 21/163 (12%), Positives = 47/163 (28%), Gaps = 13/163 (7%)
Query: 188 QSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAIPKADA 247
+ + DV G G + + ++ A +
Sbjct: 17 EEVLDVATGGGHVANAFAPFVKKVVAFDLT-EDILKVARAFIEGNGHQQVEYVQGDAEQM 75
Query: 248 VFMKWILHDWDDEACVKILKNCRQAIPD------KSGKLVLVEIVVQEDGNNIFGDMGLV 301
F H N + + K G+L+LV+ E+ +
Sbjct: 76 PFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDA-----FDVF 130
Query: 302 FDLVM-FAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYS 343
++ V + + + +W+K+LE+ GF ++ +
Sbjct: 131 YNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFI 173
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 36.1 bits (82), Expect = 0.004
Identities = 23/176 (13%), Positives = 50/176 (28%), Gaps = 14/176 (7%)
Query: 170 KIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFD---LPHVVATAP 226
+++A ++ G +L ++G G + + + + I + + H
Sbjct: 9 PFMVRAFTPFFRPG-----NLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK 63
Query: 227 VCEGIFHVGGDMFDAIPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286
H + + D + + +L DD V +LK + G+L LV
Sbjct: 64 DGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDP--VALLKRINDDWLAEGGRLFLVCPN 121
Query: 287 VQEDGNNIFGDMGLVFDLVMFAHTTGGKER----TEQEWMKLLEQGGFHRCKIISM 338
I MG++ + + G +
Sbjct: 122 ANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSGI 177
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 350 | |||
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 100.0 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 100.0 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 100.0 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 100.0 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 100.0 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.85 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.84 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.83 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.81 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.8 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.8 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.79 | |
| d1fp2a1 | 101 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.77 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.76 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.76 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.76 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.74 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.71 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.69 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.67 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.66 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.65 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.63 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.62 | |
| d1tw3a1 | 85 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.61 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.59 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.58 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.58 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.58 | |
| d1qzza1 | 92 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.55 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.52 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.51 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.5 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.5 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.5 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.49 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.49 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.4 | |
| d1fp1d1 | 110 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.38 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.38 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.38 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.37 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.37 | |
| d1kyza1 | 107 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.37 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.36 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.35 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.34 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.31 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.3 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.28 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.27 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.19 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.18 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.13 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.1 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.07 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.07 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.04 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.97 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.92 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.9 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.88 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.87 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.78 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.67 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.56 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.53 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.48 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.44 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.38 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.35 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.32 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.24 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.24 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.23 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.22 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.22 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.21 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.19 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.18 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.17 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.16 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.16 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.14 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.14 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.09 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.05 | |
| d1mkma1 | 75 | Transcriptional regulator IclR, N-terminal domain | 98.02 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.98 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.98 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.94 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.88 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.85 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.68 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.67 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.6 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.5 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.29 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.11 | |
| d1biaa1 | 63 | Biotin repressor, N-terminal domain {Escherichia c | 97.01 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 96.98 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 96.94 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.93 | |
| d1ub9a_ | 100 | Hypothetical protein PH1061 {Archaeon Pyrococcus h | 96.93 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 96.92 | |
| d1j5ya1 | 65 | Putative transcriptional regulator TM1602, N-termi | 96.91 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 96.8 | |
| d1r1ta_ | 98 | SmtB repressor {Cyanobacteria (Synechococcus), pcc | 96.41 | |
| d1r1ua_ | 94 | Metal-sensing transcriptional repressor CzrA {Stap | 96.39 | |
| d1xd7a_ | 127 | Hypothetical protein ywnA {Bacillus subtilis [TaxI | 96.24 | |
| d1lvaa3 | 64 | C-terminal fragment of elongation factor SelB {Moo | 96.15 | |
| d1z05a1 | 71 | Transcriptional regulator VC2007 N-terminal domain | 96.14 | |
| d1s3ja_ | 143 | Putative transcriptional regulator YusO {Bacillus | 96.05 | |
| d1u2wa1 | 108 | Cadmium efflux system accessory protein CadC {Stap | 96.04 | |
| d2hoea1 | 62 | N-acetylglucosamine kinase {Thermotoga maritima [T | 95.99 | |
| d1lnwa_ | 141 | MexR repressor {Pseudomonas aeruginosa [TaxId: 287 | 95.93 | |
| d3ctaa1 | 85 | Ta1064 (RFK), N-terminal domain {Thermoplasma acid | 95.9 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 95.87 | |
| d1ulya_ | 190 | Hypothetical protein PH1932 {Pyrococcus horikoshii | 95.87 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 95.84 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 95.82 | |
| d1z6ra1 | 70 | Mlc protein N-terminal domain {Escherichia coli [T | 95.68 | |
| d2p4wa1 | 194 | Transcriptional regulatory protein PF1790 {Pyrococ | 95.66 | |
| d2hr3a1 | 145 | Probable transcriptional regulator PA3067 {Pseudom | 95.58 | |
| d2bv6a1 | 136 | Transcriptional regulator MgrA {Staphylococcus aur | 95.5 | |
| d2d1ha1 | 109 | Hypothetical transcriptional regulator ST1889 {Sul | 95.46 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.35 | |
| d3broa1 | 135 | Transcriptional regulator OEOE1854 {Oenococcus oen | 95.31 | |
| d1j75a_ | 57 | Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]} | 95.29 | |
| d1r7ja_ | 90 | Sso10a (SSO10449) {Archaeon Sulfolobus solfataricu | 95.28 | |
| d1sfxa_ | 109 | Hypothetical protein AF2008 {Archaeoglobus fulgidu | 95.21 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 95.17 | |
| d2etha1 | 140 | Putative transcriptional regulator TM0816 {Thermot | 95.16 | |
| d1jgsa_ | 138 | Multiple antibiotic resistance repressor, MarR {Es | 94.99 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 94.96 | |
| d1ylfa1 | 138 | Hypothetical protein BC1842 {Bacillus cereus [TaxI | 94.96 | |
| d1ku9a_ | 151 | DNA-binding protein Mj223 {Archaeon Methanococcus | 94.86 | |
| d2gxba1 | 59 | Z-alpha domain of dsRNA-specific adenosine deamina | 94.85 | |
| d2cfxa1 | 63 | Transcriptional regulator LrpC {Bacillus subtilis | 94.45 | |
| d2fbha1 | 137 | Transcriptional regulator PA3341 {Pseudomonas aeru | 94.43 | |
| d1i1ga1 | 60 | LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 94.15 | |
| d2cg4a1 | 63 | Regulatory protein AsnC {Escherichia coli [TaxId: | 94.09 | |
| d2hzta1 | 95 | Putative transcriptional regulator YtcD {Bacillus | 93.98 | |
| d1yyva1 | 114 | Putative transcriptional regulator YtfH {Salmonell | 93.96 | |
| d2cyya1 | 60 | Putative transcriptional regulator PH1519 {Archaeo | 93.83 | |
| d2a61a1 | 139 | Transcriptional regulator TM0710 {Thermotoga marit | 93.76 | |
| d2isya1 | 63 | Iron-dependent regulator IdeR {Mycobacterium tuber | 93.62 | |
| d1z91a1 | 137 | Organic hydroperoxide resistance transcriptional r | 93.5 | |
| d3deua1 | 140 | Transcriptional regulator SlyA {Salmonella typhimu | 93.42 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.35 | |
| d2ev0a1 | 61 | Manganese transport regulator MntR {Bacillus subti | 93.28 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.14 | |
| d1lj9a_ | 144 | Transcriptional regulator SlyA {Enterococcus faeca | 93.01 | |
| d1xmka1 | 73 | Z-alpha domain of dsRNA-specific adenosine deamina | 92.98 | |
| d1jhfa1 | 71 | LexA repressor, N-terminal DNA-binding domain {Esc | 92.8 | |
| d2frha1 | 115 | Pleiotropic regulator of virulence genes, SarA {St | 92.47 | |
| d2fswa1 | 102 | Hypothetical protein PG0823 {Porphyromonas gingiva | 92.23 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 92.18 | |
| d1z7ua1 | 108 | Hypothetical protein EF0647 {Enterococcus faecalis | 92.1 | |
| d2fbia1 | 136 | Probable transcriptional regulator PA4135 {Pseudom | 92.06 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 91.88 | |
| d1hsja1 | 115 | Staphylococcal accessory regulator A homolog, SarR | 91.82 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 91.67 | |
| d2fxaa1 | 162 | Protease production regulatory protein Hpr {Bacill | 91.64 | |
| d1p4xa1 | 125 | Staphylococcal accessory regulator A homolog, SarS | 91.64 | |
| d1p4xa2 | 125 | Staphylococcal accessory regulator A homolog, SarS | 91.58 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 91.54 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 90.97 | |
| d2hs5a1 | 69 | Putative transcriptional regulator RHA1_ro03477 {R | 90.87 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 90.83 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 90.75 | |
| d2f2ea1 | 142 | Hypothetical protein PA1607 {Pseudomonas aeruginos | 90.75 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 90.66 | |
| d1sfua_ | 70 | 34L {Yaba-like disease virus, YLDV [TaxId: 132475] | 90.59 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 90.51 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 90.03 | |
| d1zyba1 | 73 | Probable transcription regulator BT4300, C-termina | 90.02 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 89.46 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 89.46 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 89.42 | |
| d2gaua1 | 81 | Transcriptional regulator PG0396, C-terminal domai | 89.27 | |
| d1i5za1 | 69 | Catabolite gene activator protein (CAP), C-termina | 89.01 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 88.5 | |
| d2fbka1 | 172 | Transcriptional regulator DR1159 {Deinococcus radi | 88.39 | |
| d2zcwa1 | 82 | Transcriptional regulator TTHA1359, C-terminal dom | 88.25 | |
| d1q1ha_ | 88 | Transcription factor E/IIe-alpha, N-terminal domai | 88.21 | |
| d1s6la1 | 60 | Alkylmercury lyase MerB {Escherichia coli [TaxId: | 88.07 | |
| d1hw1a1 | 74 | Fatty acid responsive transcription factor FadR, N | 88.07 | |
| d3bwga1 | 78 | Transcriptional regulator YydK {Bacillus subtilis | 88.0 | |
| d2p8ta1 | 69 | Hypothetical protein PH0730 {Pyrococcus horikoshii | 87.94 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 87.93 | |
| d1dpua_ | 69 | C-terminal domain of RPA32 {Human (Homo sapiens) [ | 87.88 | |
| d1cf7a_ | 67 | Cell cycle transcription factor E2F-4 {Human (Homo | 87.63 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 87.54 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 87.39 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 87.19 | |
| d2obpa1 | 81 | Putative DNA-binding protein ReutB4095 {Ralstonia | 87.07 | |
| d1stza1 | 87 | Heat-inducible transcription repressor HrcA, N-ter | 86.65 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 86.45 | |
| d1ft9a1 | 80 | CO-sensing protein CooA, C-terminal domain {Rhodos | 86.39 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 86.01 | |
| d3e5ua1 | 80 | Chlorophenol reduction protein CprK {Desulfitobact | 85.65 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 85.4 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 83.99 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 83.76 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 83.38 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 82.02 | |
| d1okra_ | 120 | Methicillin resistance regulatory protein MecI {St | 81.31 | |
| d1bl0a1 | 54 | MarA {Escherichia coli [TaxId: 562]} | 80.58 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=1.7e-44 Score=312.80 Aligned_cols=239 Identities=36% Similarity=0.683 Sum_probs=206.3
Q ss_pred ChHHHHHHhcCchhhhhhhhhhHhHhcCc-hhhhhhcCCChhhhhccCcchHHHHHHHHhhhhhhhHHHHHHhcccCCCC
Q 018775 108 SLAPMILVENNQWLLEPWHYLSQCVKEGG-IAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGFDS 186 (350)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 186 (350)
|+++++.+++++.+++.|.+|.++++++. ++|+.++|.++|+|+.++|+..+.|+++|...+......+++.++ .+++
T Consensus 3 ~l~~~~~~~~~p~~~~~w~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~-~f~~ 81 (244)
T d1fp1d2 3 YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYT-GFEG 81 (244)
T ss_dssp CCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTTT
T ss_pred cHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccC
Confidence 78889999888889999999999999875 779999999999999999999999999999988888889999988 3578
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCCCCeEEEeccCCCCCCCccEEEecchhccCChHHHHHHH
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAIPKADAVFMKWILHDWDDEACVKIL 266 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~p~~D~i~~~~vlh~~~~~~~~~~L 266 (350)
..+|||||||+|.++..+++++|+++++++|+|++++.+...+||+++.+|+++++|.+|+|++.++||+|+++++.++|
T Consensus 82 ~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~iL 161 (244)
T d1fp1d2 82 ISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFL 161 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHH
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCcccccccceEEEEehhhhhCCHHHHHHHH
Confidence 89999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCceEEEEeeeecCCCCCcc-cccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEc-CCceeE
Q 018775 267 KNCRQAIPDKSGKLVLVEIVVQEDGNNIF-GDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISM-PALYSI 344 (350)
Q Consensus 267 ~~~~~~L~~pgG~lli~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~-~~~~~v 344 (350)
++++++|+ |||+|+|.|.+.++....+. ......+|+.|+..++ |++||.+||.++|++|||+.+++++. .+..+|
T Consensus 162 ~~~~~aL~-pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~-g~ert~~e~~~ll~~AGF~~v~v~~~~~~~~~v 239 (244)
T d1fp1d2 162 SNCHKALS-PNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVG-GRERTEKQYEKLSKLSGFSKFQVACRAFNSLGV 239 (244)
T ss_dssp HHHHHHEE-EEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHS-CCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEE
T ss_pred HHHHHHcC-CCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCC-CcCCCHHHHHHHHHHcCCCceEEEecCCCCEEE
Confidence 99999999 99999999999987665422 1233567888888777 99999999999999999999999865 578899
Q ss_pred EEEee
Q 018775 345 IEAYP 349 (350)
Q Consensus 345 i~~~~ 349 (350)
||++|
T Consensus 240 iE~~K 244 (244)
T d1fp1d2 240 MEFYK 244 (244)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99998
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=1.4e-42 Score=301.04 Aligned_cols=238 Identities=38% Similarity=0.714 Sum_probs=211.0
Q ss_pred ChHHHHHHhcCchhhhhhhhhhHhHhcCc-hhhhhhcCCChhhhhccCcchHHHHHHHHhhhhhhhHHHHHHhcccCCCC
Q 018775 108 SLAPMILVENNQWLLEPWHYLSQCVKEGG-IAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGFDS 186 (350)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~L~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 186 (350)
++.+++.+..++.++..|..|++.++++. ++|+.++|+++|+|+.++|+..+.|+++|...+......+.+.. +.+.+
T Consensus 2 s~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~~-~~~~~ 80 (244)
T d1fp2a2 2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCD-FVFDG 80 (244)
T ss_dssp CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCH-HHHTT
T ss_pred ChHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhhc-ccccC
Confidence 56778888888889999999999999885 78999999999999999999999999999988776666555432 12677
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCCCCeEEEeccCCCCCCCccEEEecchhccCChHHHHHHH
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAIPKADAVFMKWILHDWDDEACVKIL 266 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~p~~D~i~~~~vlh~~~~~~~~~~L 266 (350)
..+|||||||+|.++..+++++|+++++++|+|++++.+...+||+++.+|++++.|++|+|++.++||+|++++++++|
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~iL 160 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRIL 160 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHH
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHHH
Confidence 88999999999999999999999999999999999999998999999999999988899999999999999999999999
Q ss_pred HHHHhhCCCCC---ceEEEEeeeecCCCCCcc-cccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcCCce
Q 018775 267 KNCRQAIPDKS---GKLVLVEIVVQEDGNNIF-GDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALY 342 (350)
Q Consensus 267 ~~~~~~L~~pg---G~lli~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~~~ 342 (350)
++++++|+ || |+++|.|.+.++....+. ......+++.|+. ++ |++||.+||+++|++|||++++++++++..
T Consensus 161 ~~~~~al~-pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~-~~-G~ert~~e~~~ll~~AGf~~~~i~~~~~~~ 237 (244)
T d1fp2a2 161 KKCKEAVT-NDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-LN-GKERNEEEWKKLFIEAGFQHYKISPLTGFL 237 (244)
T ss_dssp HHHHHHHS-GGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-GT-CCCEEHHHHHHHHHHTTCCEEEEEEEETTE
T ss_pred HHHHHHcC-cccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh-CC-CcCCCHHHHHHHHHHcCCceEEEEECCCCe
Confidence 99999999 98 899999999988765421 1223456776664 56 899999999999999999999999999999
Q ss_pred eEEEEee
Q 018775 343 SIIEAYP 349 (350)
Q Consensus 343 ~vi~~~~ 349 (350)
+|||++|
T Consensus 238 svIE~~p 244 (244)
T d1fp2a2 238 SLIEIYP 244 (244)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9999997
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=5.4e-42 Score=298.07 Aligned_cols=239 Identities=44% Similarity=0.816 Sum_probs=217.1
Q ss_pred CChHHHHHHhcCchhhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHHHHhhhhhhhHHHHHHhcccCCCC
Q 018775 107 LSLAPMILVENNQWLLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGFDS 186 (350)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 186 (350)
.++.+++.+..++.+++.|.+|++++|+|+++|+..+|.++|+|+.++|+..+.|+++|...+......+++.+++ ..+
T Consensus 3 ~s~~~~~~~~~~~~~~~~W~~L~~avrtG~~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~-~~~ 81 (243)
T d1kyza2 3 VSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTG-FEG 81 (243)
T ss_dssp CCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TSS
T ss_pred CcHHHHHHHhcCHHHHHHHHHHHHHHhhCCCHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhccc-ccC
Confidence 3788899888888889999999999999999999999999999999999999999999999888888889998883 356
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCCCCCeEEEeccCCCCCCCccEEEecchhccCChHHHHHHH
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPVCEGIFHVGGDMFDAIPKADAVFMKWILHDWDDEACVKIL 266 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~~~p~~D~i~~~~vlh~~~~~~~~~~L 266 (350)
..+|||||||+|..++.+++++|+++++++|+|++++.++..+|++++.+|+++++|.+|++++.++||+|+++++..+|
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~iL 161 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFL 161 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHHHH
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccccCCCcceEEEEEEeecCCHHHHHHHH
Confidence 78999999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCceEEEEeeeecCCCCCcc-cccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcCCceeEE
Q 018775 267 KNCRQAIPDKSGKLVLVEIVVQEDGNNIF-GDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPALYSII 345 (350)
Q Consensus 267 ~~~~~~L~~pgG~lli~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~~~~vi 345 (350)
++++++|+ |||+++|.|.+.++....+. ......+|+.|+..+.+|++||.+||+++|++|||+.+++++.++..+||
T Consensus 162 ~~~~~al~-pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~~~~vi 240 (243)
T d1kyza2 162 KNCYEALP-DNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIM 240 (243)
T ss_dssp HHHHHHCC-SSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEEEETTEEEE
T ss_pred HHHHHhcC-CCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCCCCEEE
Confidence 99999999 99999999999987665422 12335678888877645899999999999999999999999998889999
Q ss_pred EE
Q 018775 346 EA 347 (350)
Q Consensus 346 ~~ 347 (350)
|.
T Consensus 241 E~ 242 (243)
T d1kyza2 241 EF 242 (243)
T ss_dssp EE
T ss_pred Ee
Confidence 84
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=100.00 E-value=2e-39 Score=284.18 Aligned_cols=239 Identities=24% Similarity=0.426 Sum_probs=203.3
Q ss_pred CCChHHHHHHhcCch-hhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHHHHhhhhhhhHHHHHHhcccCC
Q 018775 106 ELSLAPMILVENNQW-LLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGF 184 (350)
Q Consensus 106 ~~~~~~~~~~~~~~~-~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~ 184 (350)
|.++.+|+.+..... ....|.+|.+++|+|.++|+..+|.++|+|+.++|+..+.|.++|...+...+..+++.++ +
T Consensus 2 p~~~~~~~~l~~~~~~~~~~~~~L~~~~rtG~~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d--~ 79 (256)
T d1qzza2 2 PAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD--W 79 (256)
T ss_dssp TTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC--C
T ss_pred cHHHHHHHhhcCchhhhHhhHHHHHHHHHhCCchhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC--C
Confidence 446677765542222 2336999999999999889999999999999999999999999999988888889999999 8
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCCCCC-CccEEEecchhcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFDAIP-KADAVFMKWILHD 256 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~~~p-~~D~i~~~~vlh~ 256 (350)
++..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+|++++.+|+++++| +||+|++.++||+
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh~ 159 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLN 159 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGG
T ss_pred ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccccccc
Confidence 8999999999999999999999999999999999888876653 6899999999999776 4999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEE
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII 336 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~ 336 (350)
|+++++.++|++++++|+ |||+|+|.|.+.++..... ......+++.|+...+ |+.||.+||+++|+++||++++++
T Consensus 160 ~~d~~~~~lL~~i~~~Lk-pgG~llI~d~~~~~~~~~~-~~~~~~~d~~ml~~~~-g~~rt~~e~~~ll~~AGf~~~~~~ 236 (256)
T d1qzza2 160 WSDEDALTILRGCVRALE-PGGRLLVLDRADVEGDGAD-RFFSTLLDLRMLTFMG-GRVRTRDEVVDLAGSAGLALASER 236 (256)
T ss_dssp SCHHHHHHHHHHHHHHEE-EEEEEEEEECCH--------HHHHHHHHHHHHHHHS-CCCCCHHHHHHHHHTTTEEEEEEE
T ss_pred cCcHHHHHHHHHHHhhcC-CcceeEEEEeccCCCCccc-HHHHHHHHHHHHhhCC-CccCCHHHHHHHHHHCCCceeEEE
Confidence 999999999999999999 9999999998765543321 1234667889988887 999999999999999999999998
Q ss_pred EcCC-----ceeEEEEee
Q 018775 337 SMPA-----LYSIIEAYP 349 (350)
Q Consensus 337 ~~~~-----~~~vi~~~~ 349 (350)
+.+. .++|+|+.+
T Consensus 237 ~~~~~~~~~~~~v~E~~~ 254 (256)
T d1qzza2 237 TSGSTTLPFDFSILEFTA 254 (256)
T ss_dssp EECCSSCSSCEEEEEEEE
T ss_pred EeCCcCccCceEEEEEEe
Confidence 8643 468999875
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=100.00 E-value=1.1e-37 Score=273.25 Aligned_cols=223 Identities=24% Similarity=0.485 Sum_probs=195.4
Q ss_pred hhhhhhhhhHhHhcCchhhhhhcCCChhhhhccCcchHHHHHHHHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHH
Q 018775 121 LLEPWHYLSQCVKEGGIAFKKAHGCEIWDFASQSPQFNNLFNDAMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGA 200 (350)
Q Consensus 121 ~~~~~~~L~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~ 200 (350)
....|.+|++++|+|.++++..+|+++|+|+.++++..+.|..+|..........+++.++ +.+..+|||||||+|.+
T Consensus 17 ~~~~~~~L~~~vr~G~~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d--~~~~~~VLDvGcG~G~~ 94 (253)
T d1tw3a2 17 ADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD--WTNVRHVLDVGGGKGGF 94 (253)
T ss_dssp HGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC--CTTCSEEEEETCTTSHH
T ss_pred ccccHHHHHHHHHhCCchhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC--CccCCEEEEeCCCCCHH
Confidence 3457899999999999899999999999999999999999999999988888899999999 88999999999999999
Q ss_pred HHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCCCCC-CccEEEecchhccCChHHHHHHHHHHHhh
Q 018775 201 LAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFDAIP-KADAVFMKWILHDWDDEACVKILKNCRQA 272 (350)
Q Consensus 201 ~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~~~p-~~D~i~~~~vlh~~~~~~~~~~L~~~~~~ 272 (350)
+..+++++|+++++++|+|++++.+++ .++|+++.+|++++.| +||+|+++++||||+++++.++|++++++
T Consensus 95 ~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~ 174 (253)
T d1tw3a2 95 AAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEA 174 (253)
T ss_dssp HHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchhhHHHHHHHHHh
Confidence 999999999999999999888876653 5899999999998655 59999999999999999999999999999
Q ss_pred CCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcCC-----ceeEEEE
Q 018775 273 IPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMPA-----LYSIIEA 347 (350)
Q Consensus 273 L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~~-----~~~vi~~ 347 (350)
|+ |||+|+|.|.......... .....+++.|+..++ |+.||.++|.++|+++||++++++.++. ...+|+.
T Consensus 175 Lk-PGG~l~i~e~~~~~~~~~~--~~~~~~dl~~~~~~~-g~~rt~~e~~~ll~~AGf~~~~v~~~~~p~~~~~~~li~~ 250 (253)
T d1tw3a2 175 LE-PGGRILIHERDDLHENSFN--EQFTELDLRMLVFLG-GALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVL 250 (253)
T ss_dssp EE-EEEEEEEEECCBCGGGCCS--HHHHHHHHHHHHHHS-CCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEE
T ss_pred cC-CCcEEEEEeccCCCCCcch--hHHHHhhHHHHhhCC-CcCCCHHHHHHHHHHCCCeEEEEEECCCCCCCccEEEEEE
Confidence 99 9999999998765544321 234567888888777 8999999999999999999999887643 2457776
Q ss_pred ee
Q 018775 348 YP 349 (350)
Q Consensus 348 ~~ 349 (350)
.|
T Consensus 251 ~P 252 (253)
T d1tw3a2 251 AP 252 (253)
T ss_dssp EE
T ss_pred ec
Confidence 65
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.85 E-value=2e-21 Score=165.97 Aligned_cols=165 Identities=17% Similarity=0.135 Sum_probs=124.1
Q ss_pred CCCcceEEEecCCchHHHHHHHHH--CCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCCCccEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKS--YPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIPKADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p~~D~i~~~~ 252 (350)
.+++.+|||||||+|..+..|++. .|+.+++++|+ ++|++.|++ ..++.+...|+.+ +.+.+|++++..
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~ 116 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF 116 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEES
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEee
Confidence 357889999999999999999986 48899999999 999998864 4678888899887 666799999999
Q ss_pred hhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcC-------------CcccCCHH
Q 018775 253 ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTT-------------GGKERTEQ 319 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~s~~ 319 (350)
++|+++.++..++|++++++|+ |||.+++.|...+...............+....... .-...+.+
T Consensus 117 ~l~~~~~~d~~~~l~~i~~~Lk-pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 195 (225)
T d1im8a_ 117 TLQFLPPEDRIALLTKIYEGLN-PNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIE 195 (225)
T ss_dssp CGGGSCGGGHHHHHHHHHHHEE-EEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHH
T ss_pred eccccChhhHHHHHHHHHHhCC-CCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHH
Confidence 9999998888899999999999 999999999877664321000000000110000000 01235889
Q ss_pred HHHHHHHhcCCceeEEEEcCCceeEEEEee
Q 018775 320 EWMKLLEQGGFHRCKIISMPALYSIIEAYP 349 (350)
Q Consensus 320 e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 349 (350)
++.++|+++||+.++++--...+..+.|+|
T Consensus 196 ~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k 225 (225)
T d1im8a_ 196 THKVRLKNVGFSQVELWFQCFNFGSMIAVK 225 (225)
T ss_dssp HHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence 999999999999999875444566677765
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.84 E-value=1.2e-20 Score=166.77 Aligned_cols=162 Identities=13% Similarity=0.174 Sum_probs=125.3
Q ss_pred HHhhhhhhhHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEe
Q 018775 164 AMACTAKIVMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVG 235 (350)
Q Consensus 164 ~m~~~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~ 235 (350)
+.......++..+....+ ++++.+|||||||+|.++..|++++ +.+++++|+ +.+++.+++ .+++++++
T Consensus 47 a~~~~~~~~~~~l~~~~~--l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~ 123 (282)
T d2o57a1 47 ASLRTDEWLASELAMTGV--LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKY 123 (282)
T ss_dssp HHHHHHHHHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEE
T ss_pred HHHHHHHHHHHHHHHhcC--CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccc
Confidence 333344444556666666 7889999999999999999999875 578999999 888887764 57899999
Q ss_pred ccCCC-CCC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCC
Q 018775 236 GDMFD-AIP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTG 312 (350)
Q Consensus 236 ~d~~~-~~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (350)
+|+.+ ++| .||+|++..++||+++. .++|++++++|+ |||++++.+....+..... ....+......
T Consensus 124 ~d~~~l~~~~~sfD~V~~~~~l~h~~d~--~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~-----~~~~~~~~~~~-- 193 (282)
T d2o57a1 124 GSFLEIPCEDNSYDFIWSQDAFLHSPDK--LKVFQECARVLK-PRGVMAITDPMKEDGIDKS-----SIQPILDRIKL-- 193 (282)
T ss_dssp CCTTSCSSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEE-EEEEEEEEEEEECTTCCGG-----GGHHHHHHHTC--
T ss_pred cccccccccccccchhhccchhhhccCH--HHHHHHHHHhcC-CCcEEEEEEeecCCCCchh-----HHHHHHHHhcc--
Confidence 99998 766 39999999999999875 478999999999 9999999998877654321 11111111111
Q ss_pred cccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 313 GKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 313 ~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
....+.+++.++++++||..+++...
T Consensus 194 ~~~~s~~~~~~~l~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 194 HDMGSLGLYRSLAKECGLVTLRTFSR 219 (282)
T ss_dssp SSCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred CCCCCHHHHHHHHHHcCCceEEEEEC
Confidence 23457899999999999999888764
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.83 E-value=1e-20 Score=162.12 Aligned_cols=151 Identities=19% Similarity=0.336 Sum_probs=116.4
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC--C
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP--K 244 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p--~ 244 (350)
.+++..+ ++++.+|||||||+|.++..+++..+ +++++|+ +++++.|++ .++++++++|+.+ +++ .
T Consensus 6 ~ll~~~~--l~~~~rVLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~ 81 (231)
T d1vl5a_ 6 KLMQIAA--LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER 81 (231)
T ss_dssp HHHHHHT--CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred HHHHhcC--CCCcCEEEEecccCcHHHHHHHHhCC--EEEEEECCHHHHhhhhhcccccccccccccccccccccccccc
Confidence 4555566 88999999999999999999998864 7899999 888887753 5789999999998 766 3
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhh-hcCCcccCCHHHHHH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFA-HTTGGKERTEQEWMK 323 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~e~~~ 323 (350)
||+|++..++||+++.+ ++|++++++|+ |||++++.+...+.... .....+..... ...+...++.++|.+
T Consensus 82 fD~v~~~~~l~~~~d~~--~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (231)
T d1vl5a_ 82 FHIVTCRIAAHHFPNPA--SFVSEAYRVLK-KGGQLLLVDNSAPENDA-----FDVFYNYVEKERDYSHHRAWKKSDWLK 153 (231)
T ss_dssp EEEEEEESCGGGCSCHH--HHHHHHHHHEE-EEEEEEEEEEEBCSSHH-----HHHHHHHHHHHHCTTCCCCCBHHHHHH
T ss_pred cccccccccccccCCHH--HHHHHHHHhcC-CCcEEEEEeCCCCCCHH-----HHHHHHHHHhhcccCcccCCCHHHHHH
Confidence 99999999999998764 78999999999 99999999877654321 11122221111 112235668899999
Q ss_pred HHHhcCCceeEEEE
Q 018775 324 LLEQGGFHRCKIIS 337 (350)
Q Consensus 324 ll~~aGf~~~~~~~ 337 (350)
+|+++||+++++..
T Consensus 154 ~l~~aGf~~~~~~~ 167 (231)
T d1vl5a_ 154 MLEEAGFELEELHC 167 (231)
T ss_dssp HHHHHTCEEEEEEE
T ss_pred HHHHCCCEEEEEEE
Confidence 99999999887654
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.81 E-value=3.8e-20 Score=160.64 Aligned_cols=148 Identities=17% Similarity=0.247 Sum_probs=119.0
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCC--Cc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIP--KA 245 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p--~~ 245 (350)
..+++.++ ..+..+|||||||+|.++..|+..+.+ +++++|. +.+++.|++ ..++++.++|+.+ +++ .|
T Consensus 83 ~~fl~~l~--~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 159 (254)
T d1xtpa_ 83 RNFIASLP--GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY 159 (254)
T ss_dssp HHHHHTST--TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred HHHHhhCC--CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCcc
Confidence 45677777 677899999999999999998877654 7889999 889888864 4568999999987 554 39
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHH
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLL 325 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll 325 (350)
|+|++.+++||+++++..++|++++++|+ |||.++|.+......... .+. ..+ ...|+.++|+++|
T Consensus 160 D~I~~~~vl~hl~d~d~~~~l~~~~~~Lk-pgG~iii~e~~~~~~~~~--------~d~----~d~-~~~rs~~~~~~l~ 225 (254)
T d1xtpa_ 160 DLIVIQWTAIYLTDADFVKFFKHCQQALT-PNGYIFFKENCSTGDRFL--------VDK----EDS-SLTRSDIHYKRLF 225 (254)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEBC--CCEE--------EET----TTT-EEEBCHHHHHHHH
T ss_pred ceEEeeccccccchhhhHHHHHHHHHhcC-CCcEEEEEecCCCCCcce--------ecc----cCC-ceeCCHHHHHHHH
Confidence 99999999999999999999999999999 999999988766543211 111 112 4567899999999
Q ss_pred HhcCCceeEEEEc
Q 018775 326 EQGGFHRCKIISM 338 (350)
Q Consensus 326 ~~aGf~~~~~~~~ 338 (350)
+++||++++...-
T Consensus 226 ~~aGf~ii~~~~q 238 (254)
T d1xtpa_ 226 NESGVRVVKEAFQ 238 (254)
T ss_dssp HHHTCCEEEEEEC
T ss_pred HHcCCEEEEEEee
Confidence 9999999987663
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.80 E-value=9.3e-20 Score=156.46 Aligned_cols=152 Identities=16% Similarity=0.282 Sum_probs=117.5
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCCC-
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIPK- 244 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p~- 244 (350)
.-+++.++ ++++.+|||||||+|.++..++++. .+++++|+ +.+++.|++ .+++.++++|+.+ ++++
T Consensus 6 ~~l~~~~~--~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~ 81 (234)
T d1xxla_ 6 GLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD 81 (234)
T ss_dssp HHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred HHHHHHhC--CCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhccccccccccccccccccccccc
Confidence 34567777 8999999999999999999999986 47899999 888888764 4679999999998 7663
Q ss_pred -ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh-HhhhcCCcccCCHHHHH
Q 018775 245 -ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV-MFAHTTGGKERTEQEWM 322 (350)
Q Consensus 245 -~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~ 322 (350)
||+|++.+++||+++. ..+|++++++|+ |||++++.+...+.... ...+++.. ......+.+..+..+|.
T Consensus 82 ~fD~v~~~~~l~~~~d~--~~~l~~~~r~Lk-pgG~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (234)
T d1xxla_ 82 SFDIITCRYAAHHFSDV--RKAVREVARVLK-QDGRFLLVDHYAPEDPV-----LDEFVNHLNRLRDPSHVRESSLSEWQ 153 (234)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHHEE-EEEEEEEEEECBCSSHH-----HHHHHHHHHHHHCTTCCCCCBHHHHH
T ss_pred ccceeeeeceeecccCH--HHHHHHHHHeeC-CCcEEEEEEcCCCCCHH-----HHHHHHHHHhhCCCcccccCCHHHHH
Confidence 9999999999998875 578999999999 99999998876554221 11122211 11111224566899999
Q ss_pred HHHHhcCCceeEEEE
Q 018775 323 KLLEQGGFHRCKIIS 337 (350)
Q Consensus 323 ~ll~~aGf~~~~~~~ 337 (350)
++++++||.+..+..
T Consensus 154 ~~~~~~gf~~~~~~~ 168 (234)
T d1xxla_ 154 AMFSANQLAYQDIQK 168 (234)
T ss_dssp HHHHHTTEEEEEEEE
T ss_pred HHHHHCCCceeEEEE
Confidence 999999998766543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=2.8e-19 Score=154.50 Aligned_cols=152 Identities=13% Similarity=0.109 Sum_probs=117.7
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCC--
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIP-- 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p-- 243 (350)
..+.+.+. +.++.+|||||||+|..+..++++++ .+++++|+ +.+++.+++ .++|+++.+|+.+..+
T Consensus 23 ~~l~~~~~--l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~ 99 (245)
T d1nkva_ 23 ATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 99 (245)
T ss_dssp HHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccC
Confidence 34556666 88899999999999999999998875 79999999 888887654 5789999999998433
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHH
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMK 323 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ 323 (350)
+||+|++..++||+++. .++|++++++|| |||++++.+.......... ..... . .........+..++.+
T Consensus 100 ~fD~v~~~~~~~~~~d~--~~~l~~~~r~Lk-PGG~l~i~~~~~~~~~~~~-----~~~~~-~-~~~~~~~~~~~~~~~~ 169 (245)
T d1nkva_ 100 KCDVAACVGATWIAGGF--AGAEELLAQSLK-PGGIMLIGEPYWRQLPATE-----EIAQA-C-GVSSTSDFLTLPGLVG 169 (245)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEE-EEEEEEEEEEEETTCCSSH-----HHHHT-T-TCSCGGGSCCHHHHHH
T ss_pred ceeEEEEEehhhccCCH--HHHHHHHHHHcC-cCcEEEEEeccccCCCChH-----HHHHH-h-ccCCCcccCCHHHHHH
Confidence 49999999999999875 478999999999 9999999988766544320 00000 0 0111123458899999
Q ss_pred HHHhcCCceeEEEEc
Q 018775 324 LLEQGGFHRCKIISM 338 (350)
Q Consensus 324 ll~~aGf~~~~~~~~ 338 (350)
+++++||.++..+..
T Consensus 170 ~~~~aG~~~v~~~~~ 184 (245)
T d1nkva_ 170 AFDDLGYDVVEMVLA 184 (245)
T ss_dssp HHHTTTBCCCEEEEC
T ss_pred HHHHcCCEEEEEEeC
Confidence 999999998877654
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=6e-20 Score=156.42 Aligned_cols=139 Identities=14% Similarity=0.181 Sum_probs=113.8
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC--CccEEEecch
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP--KADAVFMKWI 253 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p--~~D~i~~~~v 253 (350)
..+..+|||||||+|.++..+++.++ .+++++|+ +.+++.|++ ..+++|+++|+.+ +++ .||+|++..+
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 45678999999999999999887765 37999999 899988764 3468999999988 554 3999999999
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCcee
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRC 333 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~ 333 (350)
+||+++++..++|++++++|+ |||.+++.+....+.... + .......++.++|.++|+++||+++
T Consensus 137 l~h~~~~~~~~~l~~i~~~Lk-~~G~~~i~~~~~~~~~~~---------~-----~~~~~~~~~~~~~~~l~~~aGf~ii 201 (222)
T d2ex4a1 137 IGHLTDQHLAEFLRRCKGSLR-PNGIIVIKDNMAQEGVIL---------D-----DVDSSVCRDLDVVRRIICSAGLSLL 201 (222)
T ss_dssp GGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEEBSSSEEE---------E-----TTTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred cccchhhhhhhHHHHHHHhcC-CcceEEEEEccccccccc---------c-----cCCceeeCCHHHHHHHHHHcCCEEE
Confidence 999999988899999999999 999999998776553210 0 0111345689999999999999999
Q ss_pred EEEEc
Q 018775 334 KIISM 338 (350)
Q Consensus 334 ~~~~~ 338 (350)
+....
T Consensus 202 ~~~~q 206 (222)
T d2ex4a1 202 AEERQ 206 (222)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 88764
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.77 E-value=1.6e-19 Score=132.16 Aligned_cols=98 Identities=36% Similarity=0.612 Sum_probs=87.0
Q ss_pred hHHhhhHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeeccc
Q 018775 4 HEELLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQS 83 (350)
Q Consensus 4 ~~~~~~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 83 (350)
|.|..+++..||++++||+.+++|++|+++||||.|.++++|+|++|||+++++++.+.+.+.|+||+|++.|++.+++.
T Consensus 3 ~~e~~qaq~~l~~~~~gf~~s~aL~~aveLgi~d~l~~~~~p~t~~eLa~~~~~~~~~~~~L~RlLR~L~~~gi~~~~~~ 82 (101)
T d1fp2a1 3 PSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITK 82 (101)
T ss_dssp STHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEES
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHHHHcCCCCCHHHHHHHcCCCCccchHHHHHHHHHHhCCceeeecC
Confidence 56888999999999999999999999999999999976568999999999999965566789999999999999987542
Q ss_pred CCCCCCCeEecChhchhhhcCC
Q 018775 84 SDGGDETLYKMTHISKWLLHDS 105 (350)
Q Consensus 84 ~~~~~~~~~~~t~~s~~l~~~~ 105 (350)
+ +++|.+|+.|++|++++
T Consensus 83 ~----~~~Y~lt~~s~~Lv~~~ 100 (101)
T d1fp2a1 83 E----EESYALTVASELLVRGS 100 (101)
T ss_dssp S----SEEEEECHHHHTTSTTS
T ss_pred C----CCeEecCHHHHHhhcCC
Confidence 1 47899999999998775
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=1.9e-18 Score=145.44 Aligned_cols=137 Identities=18% Similarity=0.194 Sum_probs=102.2
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-CCC--CccEEEecchhccCChHH
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-AIP--KADAVFMKWILHDWDDEA 261 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh~~~~~~ 261 (350)
+..+|||||||+|.++..+. +.+++|+ +.+++.+++ .+++++.+|+.+ +.+ .||+|++.++|||+++.
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~-~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~- 107 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARK-RGVFVLKGTAENLPLKDESFDFALMVTTICFVDDP- 107 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHH-TTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH-
T ss_pred CCCeEEEECCCCcccccccc------eEEEEeCChhhcccccc-ccccccccccccccccccccccccccccccccccc-
Confidence 45689999999999988774 3578999 899998874 469999999998 665 39999999999999865
Q ss_pred HHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEE
Q 018775 262 CVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIIS 337 (350)
Q Consensus 262 ~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~ 337 (350)
.++|++++++|+ |||++++.+........ ..............+...+|.+++.++|+++||+++++..
T Consensus 108 -~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 108 -ERALKEAYRILK-KGGYLIVGIVDRESFLG-----REYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp -HHHHHHHHHHEE-EEEEEEEEEECSSSHHH-----HHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred -ccchhhhhhcCC-CCceEEEEecCCcchhH-----HhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 578999999999 99999998764432100 0000000001111224456899999999999999988765
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.76 E-value=1.5e-18 Score=152.25 Aligned_cols=163 Identities=15% Similarity=0.204 Sum_probs=126.4
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIPK 244 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p~ 244 (350)
.+.+++.+. ++++.+|||||||.|.++..++++++ .+++++|+ +++++.+++ ..++.+...|..+....
T Consensus 41 ~~~~~~~l~--l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~ 117 (280)
T d2fk8a1 41 VDLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEP 117 (280)
T ss_dssp HHHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCC
T ss_pred HHHHHHHcC--CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccc
Confidence 456788887 89999999999999999999888764 69999999 887776653 56788888887664346
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcc-c-----ccchhhhhhHhhhcCCcccCCH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIF-G-----DMGLVFDLVMFAHTTGGKERTE 318 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~s~ 318 (350)
||.|++..+++|++++....++++++++|| |||+++|.+.+..+...... . ......++.....+++|..+|.
T Consensus 118 fD~i~si~~~eh~~~~~~~~~f~~i~~~Lk-pgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~ 196 (280)
T d2fk8a1 118 VDRIVSIEAFEHFGHENYDDFFKRCFNIMP-ADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPST 196 (280)
T ss_dssp CSEEEEESCGGGTCGGGHHHHHHHHHHHSC-TTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCH
T ss_pred hhhhhHhhHHHHhhhhhHHHHHHHHHhccC-CCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccch
Confidence 999999999999998888899999999999 99999998866544221100 0 0011223444445676788899
Q ss_pred HHHHHHHHhcCCceeEEEEcC
Q 018775 319 QEWMKLLEQGGFHRCKIISMP 339 (350)
Q Consensus 319 ~e~~~ll~~aGf~~~~~~~~~ 339 (350)
+++.+.++++||.++.+..++
T Consensus 197 ~~l~~~~e~aGf~v~~~~~~~ 217 (280)
T d2fk8a1 197 EMMVEHGEKAGFTVPEPLSLR 217 (280)
T ss_dssp HHHHHHHHHTTCBCCCCEECH
T ss_pred HhhhhhHHhhccccceeeecc
Confidence 999999999999999887653
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.76 E-value=9.9e-18 Score=146.85 Aligned_cols=163 Identities=12% Similarity=0.163 Sum_probs=127.5
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIPK 244 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p~ 244 (350)
.+.+++.+. ++++.+|||||||.|.+++.+++++ +++++++++ ++.++.+++ .+++++..+|+.+...+
T Consensus 51 ~~~~~~~l~--l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~ 127 (285)
T d1kpga_ 51 IDLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEP 127 (285)
T ss_dssp HHHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCC
T ss_pred HHHHHHHcC--CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccccc
Confidence 456777887 8999999999999999999999998 589999998 776665543 68999999998763346
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCC-----ccc-ccchhhhhhHhhhcCCcccCCH
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNN-----IFG-DMGLVFDLVMFAHTTGGKERTE 318 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~s~ 318 (350)
||.|++..++.|+..+....++++++++|+ |||++++.......+... +.. ......++.....+++|...+.
T Consensus 128 fD~i~si~~~eh~~~~~~~~~~~~~~r~Lk-pgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl 206 (285)
T d1kpga_ 128 VDRIVSIGAFEHFGHERYDAFFSLAHRLLP-ADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSI 206 (285)
T ss_dssp CSEEEEESCGGGTCTTTHHHHHHHHHHHSC-TTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCH
T ss_pred ccceeeehhhhhcCchhHHHHHHHHHhhcC-CCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCCh
Confidence 999999999999987777789999999999 999999988775432110 000 0111223333444666788899
Q ss_pred HHHHHHHHhcCCceeEEEEcC
Q 018775 319 QEWMKLLEQGGFHRCKIISMP 339 (350)
Q Consensus 319 ~e~~~ll~~aGf~~~~~~~~~ 339 (350)
+++.++++++||.++++..++
T Consensus 207 ~~~~~~~e~agf~v~~~~~~~ 227 (285)
T d1kpga_ 207 PMVQECASANGFTVTRVQSLQ 227 (285)
T ss_dssp HHHHHHHHTTTCEEEEEEECH
T ss_pred hhHHHHHHHhchhhcccccch
Confidence 999999999999999987764
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.74 E-value=6.8e-18 Score=148.34 Aligned_cols=163 Identities=13% Similarity=0.146 Sum_probs=126.3
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIPK 244 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p~ 244 (350)
.+.+++.+. ++++.+|||||||.|.++..++++++ ++++++++ ++.++.+++ .+++++...|+..+..+
T Consensus 50 ~~~~~~~l~--l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~ 126 (291)
T d1kpia_ 50 RKLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEP 126 (291)
T ss_dssp HHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCC
T ss_pred HHHHHHhcC--CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccc
Confidence 456778888 89999999999999999999999885 69999998 776665543 67899998887654446
Q ss_pred ccEEEecchhccCCh-------HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCc------ccccchhhhhhHhhhcC
Q 018775 245 ADAVFMKWILHDWDD-------EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNI------FGDMGLVFDLVMFAHTT 311 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~-------~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 311 (350)
||.|++..++.|+++ +.-..++++++++|+ |||++++.....++..... ........++.....++
T Consensus 127 fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lk-pgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFp 205 (291)
T d1kpia_ 127 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTP-DDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFP 205 (291)
T ss_dssp CSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSC-TTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCT
T ss_pred cceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCC-CCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcC
Confidence 999999999999886 345689999999999 9999999888775532110 00011122333334566
Q ss_pred CcccCCHHHHHHHHHhcCCceeEEEEcC
Q 018775 312 GGKERTEQEWMKLLEQGGFHRCKIISMP 339 (350)
Q Consensus 312 ~~~~~s~~e~~~ll~~aGf~~~~~~~~~ 339 (350)
+|...|.+++...++++||++..+..++
T Consensus 206 gg~lps~~~~~~~~e~~gl~v~~~~~~~ 233 (291)
T d1kpia_ 206 GGRLPRISQVDYYSSNAGWKVERYHRIG 233 (291)
T ss_dssp TCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred CCCCCCHHHHHhhhcccccccceeeecc
Confidence 6788899999999999999999887764
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.71 E-value=1.5e-17 Score=146.32 Aligned_cols=151 Identities=17% Similarity=0.149 Sum_probs=109.0
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCCC-ccEEEecchh
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIPK-ADAVFMKWIL 254 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p~-~D~i~~~~vl 254 (350)
..++.+|||||||+|.++..+++.+|. .+++++|+ +.+++.|++ ..+++|+.+|+.+ ++++ ||+|++.+++
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD~v~~~~~l 104 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL 104 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCceEEEEehhh
Confidence 567899999999999999999998874 78999999 888888764 3478999999998 5554 9999999999
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCC---------cccccchhhhhhH-hhhcCCcccC-CHHHHHH
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNN---------IFGDMGLVFDLVM-FAHTTGGKER-TEQEWMK 323 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~-s~~e~~~ 323 (350)
||+++++ .+|++++++|| |||++++.|+........ .......+..... ..... +... ...++..
T Consensus 105 ~~~~d~~--~~l~~~~~~Lk-pgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~~ 180 (281)
T d2gh1a1 105 LHMTTPE--TMLQKMIHSVK-KGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRN-GKDGNIGMKIPI 180 (281)
T ss_dssp GGCSSHH--HHHHHHHHTEE-EEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTT-CCCTTGGGTHHH
T ss_pred hcCCCHH--HHHHHHHHHcC-cCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHc-CCCCCHHHHHHH
Confidence 9998764 78999999999 999999998643211110 0000111111111 11112 2222 2246778
Q ss_pred HHHhcCCceeEEEEc
Q 018775 324 LLEQGGFHRCKIISM 338 (350)
Q Consensus 324 ll~~aGf~~~~~~~~ 338 (350)
+|+++||+.+++...
T Consensus 181 ~l~eaGf~~i~~~~~ 195 (281)
T d2gh1a1 181 YLSELGVKNIECRVS 195 (281)
T ss_dssp HHHHTTCEEEEEEEC
T ss_pred HHHHcCCeEEEEEEe
Confidence 899999999987654
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.69 E-value=8.3e-17 Score=136.92 Aligned_cols=145 Identities=15% Similarity=0.171 Sum_probs=104.7
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--CCCeEEEeccCCC-CCC-CccEEEecchhccCCh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--CEGIFHVGGDMFD-AIP-KADAVFMKWILHDWDD 259 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh~~~~ 259 (350)
.++.+|||||||+|.++..++++. .+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .||+|++..+|||+++
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~d 96 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 96 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecCC
Confidence 346789999999999999998875 46999999 889998875 5679999999887 444 4999999999999987
Q ss_pred HHHHHHHHHHH-hhCCCCCceEEEEeeeecCCCC------CcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCce
Q 018775 260 EACVKILKNCR-QAIPDKSGKLVLVEIVVQEDGN------NIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHR 332 (350)
Q Consensus 260 ~~~~~~L~~~~-~~L~~pgG~lli~e~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~ 332 (350)
+ ..+|++++ ++|+ |||.+++.-+....... .............. ..++.+.++.++++++++++||++
T Consensus 97 ~--~~~l~~i~~~~Lk-~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~~~~~~l~~~l~~~Gf~i 171 (225)
T d2p7ia1 97 P--VALLKRINDDWLA-EGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEF--AHGHRCTYALDTLERDASRAGLQV 171 (225)
T ss_dssp H--HHHHHHHHHTTEE-EEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHH--HTTCCCCCCHHHHHHHHHHTTCEE
T ss_pred H--HHHHHHHHHHhcC-CCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCcccc--ceeeeeccCHHHHHHHHHHCCCEE
Confidence 6 47799998 7899 99999986543221000 00000000000011 122245668999999999999998
Q ss_pred eEEE
Q 018775 333 CKII 336 (350)
Q Consensus 333 ~~~~ 336 (350)
++..
T Consensus 172 ~~~~ 175 (225)
T d2p7ia1 172 TYRS 175 (225)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8754
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.67 E-value=2.2e-16 Score=131.48 Aligned_cols=100 Identities=12% Similarity=0.115 Sum_probs=86.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-CCC-CccEEEecchhc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-AIP-KADAVFMKWILH 255 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~~p-~~D~i~~~~vlh 255 (350)
..+.+|||||||+|..+..|+++. .+++++|+ +.+++.++. .+++++...|+.+ +.+ .||+|++..++|
T Consensus 29 ~~~grvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~~ 106 (198)
T d2i6ga1 29 VAPGRTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMM 106 (198)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCGG
T ss_pred CCCCcEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeeee
Confidence 345699999999999999999974 57899999 888887653 3679999999998 443 499999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
|+++++..++|++++++|+ |||.+++.....
T Consensus 107 ~~~~~~~~~~l~~~~~~L~-pgG~~~~~~~~~ 137 (198)
T d2i6ga1 107 FLEAQTIPGLIANMQRCTK-PGGYNLIVAAMD 137 (198)
T ss_dssp GSCTTHHHHHHHHHHHTEE-EEEEEEEEEEBC
T ss_pred cCCHHHHHHHHHHHHHHcC-CCcEEEEEEecC
Confidence 9999988999999999999 999999876654
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.66 E-value=2.2e-16 Score=134.00 Aligned_cols=146 Identities=12% Similarity=0.115 Sum_probs=112.8
Q ss_pred hcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCCCC--C--CccEEE
Q 018775 179 HYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFDAI--P--KADAVF 249 (350)
Q Consensus 179 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~~--p--~~D~i~ 249 (350)
.++ ++++.+|||||||+|.++..+++..|+.+++++|+ |.+++.++. ..++..+.+|...+. . .+|+++
T Consensus 69 ~l~--ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~ 146 (230)
T d1g8sa_ 69 VMP--IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDV 146 (230)
T ss_dssp CCC--CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred hCC--CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEE
Confidence 445 78899999999999999999999999999999999 888776543 567888888888732 2 278888
Q ss_pred ecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcC
Q 018775 250 MKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGG 329 (350)
Q Consensus 250 ~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aG 329 (350)
+.+.+|++++ ...+++++++.|| |||++++.+.....+... ......+++.+.|+++|
T Consensus 147 i~~~~~~~~~--~~~~l~~~~r~LK-pgG~~~i~~k~~~~d~~~-------------------~~~~~~~e~~~~L~~aG 204 (230)
T d1g8sa_ 147 IYEDVAQPNQ--AEILIKNAKWFLK-KGGYGMIAIKARSIDVTK-------------------DPKEIFKEQKEILEAGG 204 (230)
T ss_dssp EEECCCSTTH--HHHHHHHHHHHEE-EEEEEEEEEEGGGTCSSS-------------------CHHHHHHHHHHHHHHHT
T ss_pred eeccccchHH--HHHHHHHHHHhcc-cCceEEEEeeccccCCCC-------------------CHHHHHHHHHHHHHHcC
Confidence 8888887554 4578999999999 999999987665443221 11123477889999999
Q ss_pred CceeEEEEcCCc---eeEEEEe
Q 018775 330 FHRCKIISMPAL---YSIIEAY 348 (350)
Q Consensus 330 f~~~~~~~~~~~---~~vi~~~ 348 (350)
|++++.+.+.++ +.++.++
T Consensus 205 F~ive~idL~py~~~H~~vvg~ 226 (230)
T d1g8sa_ 205 FKIVDEVDIEPFEKDHVMFVGI 226 (230)
T ss_dssp EEEEEEEECTTTSTTEEEEEEE
T ss_pred CEEEEEecCCCCcCCeEEEEEE
Confidence 999999988543 5555553
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.65 E-value=9.8e-17 Score=136.16 Aligned_cols=100 Identities=15% Similarity=0.203 Sum_probs=87.4
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC--CccEEEecchhc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP--KADAVFMKWILH 255 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh 255 (350)
++..+|||||||+|.++..+++. +.+++++|+ +.+++.|++ ...+.++.+|+.+ +++ .||+|++..++|
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~ 113 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 113 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchh
Confidence 46789999999999999999985 568999999 899988764 4578889999998 665 499999999999
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
|+++.+..++|++++++|+ |||++++.....
T Consensus 114 ~~~~~d~~~~l~~i~~~Lk-pgG~lii~~~~~ 144 (226)
T d1ve3a1 114 HFEPLELNQVFKEVRRVLK-PSGKFIMYFTDL 144 (226)
T ss_dssp GCCHHHHHHHHHHHHHHEE-EEEEEEEEEECH
T ss_pred hCChhHHHHHHHHHHHHcC-cCcEEEEEEcCc
Confidence 9998888899999999999 999999876543
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.63 E-value=7.9e-16 Score=127.69 Aligned_cols=108 Identities=11% Similarity=0.087 Sum_probs=90.6
Q ss_pred HHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------------------CCCeEEEecc
Q 018775 177 VSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------------------CEGIFHVGGD 237 (350)
Q Consensus 177 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~i~~~~~d 237 (350)
...+. .+++.+|||||||+|..+..|+++ +.+++++|+ +.+++.+++ ...+++..+|
T Consensus 13 ~~~l~--~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 88 (201)
T d1pjza_ 13 WSSLN--VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD 88 (201)
T ss_dssp HHHHC--CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred HHHcC--CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccc
Confidence 34444 778999999999999999999997 678999999 899987763 3456788999
Q ss_pred CCCCCC----CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 238 MFDAIP----KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 238 ~~~~~p----~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
+.+..+ .+|+|++..++|++++++...++++++++|| |||++++.......
T Consensus 89 ~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lk-pgG~l~l~~~~~~~ 143 (201)
T d1pjza_ 89 FFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMP-QACSGLLITLEYDQ 143 (201)
T ss_dssp CSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSC-SEEEEEEEEESSCS
T ss_pred ccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcC-CCcEEEEEEccccc
Confidence 988322 4999999999999999888999999999999 99999887655443
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.62 E-value=7.1e-16 Score=132.83 Aligned_cols=95 Identities=16% Similarity=0.149 Sum_probs=80.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCC-CccEEEec-chhc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIP-KADAVFMK-WILH 255 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p-~~D~i~~~-~vlh 255 (350)
.++.+|||||||+|.++..++++. .+++++|+ +.|++.|++ ..+++++++|+.+ +.+ .||+|++. ++++
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN 113 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeee
Confidence 346799999999999999999985 47899999 899988764 4579999999988 544 49999875 6777
Q ss_pred cC-ChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 256 DW-DDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 256 ~~-~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
++ +.++..++|++++++|+ |||.+++
T Consensus 114 ~~~~~~~~~~~l~~~~~~Lk-pgG~~i~ 140 (246)
T d1y8ca_ 114 YIIDSDDLKKYFKAVSNHLK-EGGVFIF 140 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEE-EEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCC-CCeEEEE
Confidence 76 46678899999999999 9999886
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.61 E-value=7.6e-16 Score=109.14 Aligned_cols=80 Identities=26% Similarity=0.344 Sum_probs=73.7
Q ss_pred HHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEec
Q 018775 15 WQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKM 94 (350)
Q Consensus 15 ~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~ 94 (350)
+..+.++..+.+|++|+++||||.|.+ +|+|++|||+++|+ ++..+.|+||+|++.|++++++ ++.|.+
T Consensus 6 l~~l~~~~~~~aL~~av~L~ifd~l~~--gp~s~~eLA~~~g~---~~~~l~rlLr~l~a~gl~~e~~------~~~y~l 74 (85)
T d1tw3a1 6 LIRLGSLHTPMVVRTAATLRLVDHILA--GARTVKALAARTDT---RPEALLRLIRHLVAIGLLEEDA------PGEFVP 74 (85)
T ss_dssp HHHHHCSHHHHHHHHHHHTTHHHHHHT--TCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE------TTEEEE
T ss_pred HHHHHchHHHHHHHHHHHcCcHHHhcc--CCCCHHHHHHHhCc---ChhHHHHHHHHHHHCCCeEecC------CCeEec
Confidence 455588999999999999999999986 89999999999999 8999999999999999999987 689999
Q ss_pred ChhchhhhcCC
Q 018775 95 THISKWLLHDS 105 (350)
Q Consensus 95 t~~s~~l~~~~ 105 (350)
|+.|+.|.+|+
T Consensus 75 t~~s~~L~~Dh 85 (85)
T d1tw3a1 75 TEVGELLADDH 85 (85)
T ss_dssp CTTGGGGSTTS
T ss_pred CHHHHHhhcCC
Confidence 99999988763
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.59 E-value=1.1e-15 Score=131.77 Aligned_cols=106 Identities=20% Similarity=0.251 Sum_probs=89.1
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-CCCC-c
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-AIPK-A 245 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~~p~-~ 245 (350)
..+++.+. ..+..+|||||||+|..+..|+++. .+++++|+ +.+++.|++ ..+++++++|+.+ ++++ |
T Consensus 31 ~~~~~~~~--~~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~f 106 (251)
T d1wzna1 31 EEIFKEDA--KREVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF 106 (251)
T ss_dssp HHHHHHTC--SSCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCE
T ss_pred HHHHHHhc--CCCCCEEEEeCCCCCccchhhcccc--eEEEEEeeccccccccccccccccccchheehhhhhccccccc
Confidence 34455555 5677899999999999999999874 57999999 899998875 4579999999998 6664 9
Q ss_pred cEEEec-chhccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 246 DAVFMK-WILHDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 246 D~i~~~-~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
|+|++. .+++|++.++..++|++++++|+ |||++++..
T Consensus 107 D~I~~~~~~~~~~~~~~~~~~L~~~~~~Lk-pgG~lii~~ 145 (251)
T d1wzna1 107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALK-PGGVFITDF 145 (251)
T ss_dssp EEEEECSSGGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred chHhhhhhhhhcCChHHHHHHHHHHHHHcC-CCcEEEEEe
Confidence 999986 68888888888999999999999 999998743
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.58 E-value=4.9e-15 Score=127.96 Aligned_cols=104 Identities=18% Similarity=0.244 Sum_probs=84.7
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CC-C--
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AI-P-- 243 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~-p-- 243 (350)
+++.+. +++.+|||||||+|..+..+++... .+++++|+ +.+++.|++ ..++.+..+|+.. +. +
T Consensus 17 lI~~~~---~~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~ 92 (252)
T d1ri5a_ 17 LIRLYT---KRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGK 92 (252)
T ss_dssp HHHHHC---CTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSS
T ss_pred HHHHhC---CCcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccc
Confidence 444443 5778999999999999999988743 47899999 899888753 4579999999977 43 2
Q ss_pred CccEEEecchhccC--ChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 244 KADAVFMKWILHDW--DDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 244 ~~D~i~~~~vlh~~--~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
.||+|++..++||+ +.++...+|++++++|+ |||++++..
T Consensus 93 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk-~gG~~i~~~ 134 (252)
T d1ri5a_ 93 EFDVISSQFSFHYAFSTSESLDIAQRNIARHLR-PGGYFIMTV 134 (252)
T ss_dssp CEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred cceEEEEcceeeecCCCHHHHHHHHHHHhceeC-CCCEEEEEe
Confidence 39999999999996 34567899999999999 999998753
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=5.7e-16 Score=134.16 Aligned_cols=152 Identities=14% Similarity=-0.032 Sum_probs=102.8
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCC---------------------------
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEG--------------------------- 230 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~--------------------------- 230 (350)
..++.+|||||||+|..+..++... ..+++++|+ +.+++.+++ ...
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 4568899999999999887666653 237999999 888887753 110
Q ss_pred ---e-EEEeccCC----C-CCC--CccEEEecchhccCCh--HHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccc
Q 018775 231 ---I-FHVGGDMF----D-AIP--KADAVFMKWILHDWDD--EACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGD 297 (350)
Q Consensus 231 ---i-~~~~~d~~----~-~~p--~~D~i~~~~vlh~~~~--~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~ 297 (350)
+ .....+.. . +.+ .||+|++.+++||++. ++...++++++++|| |||++++.+.........
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~Lk-pGG~li~~~~~~~~~~~~---- 202 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLK-PGGHLVTTVTLRLPSYMV---- 202 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEEESSCCEEEE----
T ss_pred hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccC-CCcEEEEEEeccccccee----
Confidence 0 11111111 1 223 4999999999999763 466789999999999 999999987643321100
Q ss_pred cchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEEEcC----------CceeEEEEeeC
Q 018775 298 MGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKIISMP----------ALYSIIEAYPQ 350 (350)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~~~~----------~~~~vi~~~~~ 350 (350)
.+. ... ....+.++++++|++|||+++++...+ ....++.|||+
T Consensus 203 ----~~~----~~~-~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~~~~~~~~~~~~~v~arKk 256 (257)
T d2a14a1 203 ----GKR----EFS-CVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKK 256 (257)
T ss_dssp ----TTE----EEE-CCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEEC
T ss_pred ----ccc----ccc-ccCCCHHHHHHHHHHCCCEEEEEEEeccccccccCCCCcEEEEEEEeC
Confidence 000 011 234579999999999999988874432 22457778874
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=6.5e-15 Score=125.31 Aligned_cols=131 Identities=9% Similarity=-0.070 Sum_probs=103.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----------------------CCCeEEEeccCC
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----------------------CEGIFHVGGDMF 239 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~~i~~~~~d~~ 239 (350)
..++.+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..++++.++|++
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 567889999999999999999986 568999999 888875421 468999999998
Q ss_pred C-C-CC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCccc
Q 018775 240 D-A-IP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKE 315 (350)
Q Consensus 240 ~-~-~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (350)
+ + .+ .||+|+...++|++++++...++++++++|+ |||++++.....+..... .+ -..
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lk-pgG~~~l~~~~~~~~~~~----------------gp-p~~ 182 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLG-KKFQYLLCVLSYDPTKHP----------------GP-PFY 182 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEE-EEEEEEEEEEECCTTTCC----------------CS-SCC
T ss_pred hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcC-CcceEEEEEcccCCCCCC----------------CC-CCC
Confidence 7 2 22 4999999999999999999999999999999 999998877665443211 01 123
Q ss_pred CCHHHHHHHHHhcCCceeEE
Q 018775 316 RTEQEWMKLLEQGGFHRCKI 335 (350)
Q Consensus 316 ~s~~e~~~ll~~aGf~~~~~ 335 (350)
.+.+++.++|++ +|.+..+
T Consensus 183 ~~~~el~~lf~~-~~~i~~l 201 (229)
T d2bzga1 183 VPHAEIERLFGK-ICNIRCL 201 (229)
T ss_dssp CCHHHHHHHHTT-TEEEEEE
T ss_pred CCHHHHHHHhcC-CCEEEEE
Confidence 478999999965 6765444
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.55 E-value=3e-15 Score=107.26 Aligned_cols=86 Identities=26% Similarity=0.300 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCC
Q 018775 9 RGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGD 88 (350)
Q Consensus 9 ~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~ 88 (350)
...+.+++++.+++.+.+|++|+++||||.|.+ +|+|++|||+++|+ +++.+.|+|++|++.|++++++.+
T Consensus 6 ~~~d~ll~~~~~~~~~~~L~~aveL~ifd~L~~--gp~t~~eLA~~~g~---~~~~l~rLlr~L~a~gll~~~~d~---- 76 (92)
T d1qzza1 6 QDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA--GADTLAGLADRTDT---HPQALSRLVRHLTVVGVLEGGEKQ---- 76 (92)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT--TCCSHHHHHHHHTC---CHHHHHHHHHHHHHTTSEECCCC-----
T ss_pred hhHHHHHHHHHchHHHHHHHHHHHcCchHHHhC--CCCCHHHHHHHHCc---CchHHHHHHHHHHHCCCeeeecCC----
Confidence 567889999999999999999999999999986 89999999999999 899999999999999999998621
Q ss_pred CCeEecChhchhhhc
Q 018775 89 ETLYKMTHISKWLLH 103 (350)
Q Consensus 89 ~~~~~~t~~s~~l~~ 103 (350)
.+.|++|+.+..|..
T Consensus 77 ~~~~~~t~~g~lL~d 91 (92)
T d1qzza1 77 GRPLRPTRLGMLLAD 91 (92)
T ss_dssp CCCCEECTTGGGGST
T ss_pred CceecccHHHHhccC
Confidence 346888998887764
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1e-14 Score=126.67 Aligned_cols=146 Identities=16% Similarity=0.069 Sum_probs=98.9
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCC-------------------
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEG------------------- 230 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~------------------- 230 (350)
+.+.+......+.+|||||||+|.++...+.... .+++++|. +.+++.+++ ...
T Consensus 44 ~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~-~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 122 (263)
T d2g72a1 44 LAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHF-EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGEC 122 (263)
T ss_dssp HHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGC-SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCC
T ss_pred HHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccC-CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccch
Confidence 3333433345689999999999987755454433 37999999 888886642 100
Q ss_pred ------------eEEEeccCCCC-------C-C-CccEEEecchhccCCh--HHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 231 ------------IFHVGGDMFDA-------I-P-KADAVFMKWILHDWDD--EACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 231 ------------i~~~~~d~~~~-------~-p-~~D~i~~~~vlh~~~~--~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
......|+.++ . + .||+|++.++||+.+. ++..++|++++++|| |||.|++.+...
T Consensus 123 ~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~Lk-PGG~li~~~~~~ 201 (263)
T d2g72a1 123 WQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLR-PGGHLLLIGALE 201 (263)
T ss_dssp HHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEEEES
T ss_pred hhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcC-CCCEEEEecccC
Confidence 12344566541 1 1 3999999999999863 357789999999999 999999987654
Q ss_pred cCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEE
Q 018775 288 QEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII 336 (350)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~ 336 (350)
..... .... ... ....+.+++.++|+++||+++++.
T Consensus 202 ~~~~~---------~~~~---~~~-~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 202 ESWYL---------AGEA---RLT-VVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp CCEEE---------ETTE---EEE-CCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred Ccccc---------cCCc---ccc-cCCCCHHHHHHHHHHCCCeEEEEE
Confidence 32110 0000 001 123589999999999999988754
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.51 E-value=4.5e-14 Score=116.85 Aligned_cols=103 Identities=17% Similarity=0.242 Sum_probs=83.2
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--------CCCeEEEeccCCCCCC--
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--------CEGIFHVGGDMFDAIP-- 243 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~~~p-- 243 (350)
.+++.++ ..++.+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..++++..+|++++.+
T Consensus 43 lLi~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~ 118 (194)
T d1dusa_ 43 ILVENVV--VDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHCC--CCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHhCC--cCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccC
Confidence 3455666 67789999999999999999998876 5777888 888877653 4579999999998544
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
.||+|++...+|+ ..+....+++++.+.|+ |||++++.
T Consensus 119 ~fD~Ii~~~p~~~-~~~~~~~~l~~~~~~Lk-pgG~l~i~ 156 (194)
T d1dusa_ 119 KYNKIITNPPIRA-GKEVLHRIIEEGKELLK-DNGEIWVV 156 (194)
T ss_dssp CEEEEEECCCSTT-CHHHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred CceEEEEcccEEe-cchhhhhHHHHHHHhcC-cCcEEEEE
Confidence 4999999888775 44446789999999999 99999874
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.50 E-value=5.4e-14 Score=117.37 Aligned_cols=142 Identities=13% Similarity=0.075 Sum_probs=100.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCCC-CC--CccEE-Eecchh
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFDA-IP--KADAV-FMKWIL 254 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~-~p--~~D~i-~~~~vl 254 (350)
++++.+|||||||+|.++..+++..|+.+++++|+ |.+++.+++ ..++.++.+|...+ .+ .+|.+ ++.+.+
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~ 133 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI 133 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecc
Confidence 78999999999999999999999999889999999 999887764 57899999998873 32 23322 333445
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeE
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCK 334 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~ 334 (350)
+++. +...++++++++|| |||++++...........+ ......+..+.+ ++||++++
T Consensus 134 ~~~~--~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~d~~~~-------------------~~~~~~~~~~~l-~~gf~i~E 190 (209)
T d1nt2a_ 134 AQKN--QIEILKANAEFFLK-EKGEVVIMVKARSIDSTAE-------------------PEEVFKSVLKEM-EGDFKIVK 190 (209)
T ss_dssp CSTT--HHHHHHHHHHHHEE-EEEEEEEEEEHHHHCTTSC-------------------HHHHHHHHHHHH-HTTSEEEE
T ss_pred cChh--hHHHHHHHHHHHhc-cCCeEEEEEEccccCCCCC-------------------HHHHHHHHHHHH-HcCCEEEE
Confidence 5533 34578999999999 9999999875443322110 000012222333 47999999
Q ss_pred EEEcCC---ceeEEEEe
Q 018775 335 IISMPA---LYSIIEAY 348 (350)
Q Consensus 335 ~~~~~~---~~~vi~~~ 348 (350)
.+.+.+ .+.++-++
T Consensus 191 ~i~L~P~~~~H~~v~~~ 207 (209)
T d1nt2a_ 191 HGSLMPYHRDHIFIHAY 207 (209)
T ss_dssp EEECTTTCTTEEEEEEE
T ss_pred EEccCCCccCcEEEEEE
Confidence 988754 35566665
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.50 E-value=7.6e-15 Score=125.87 Aligned_cols=96 Identities=19% Similarity=0.170 Sum_probs=80.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-CCC--CccEEEe-cchhccCCh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-AIP--KADAVFM-KWILHDWDD 259 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~p--~~D~i~~-~~vlh~~~~ 259 (350)
+++.+|||||||+|.++..|++. +.+++++|+ +.+++.|++.....++.+|+.+ +++ .||+|++ ..++||+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d 118 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 118 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhh
Confidence 46789999999999999999876 568999999 9999988863333467788888 665 3999997 479999887
Q ss_pred HHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 260 EACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 260 ~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
.+ ++|++++++|+ |||.+++..+
T Consensus 119 ~~--~~l~~i~r~Lk-~gG~~ii~~~ 141 (246)
T d2avna1 119 KD--KAFSEIRRVLV-PDGLLIATVD 141 (246)
T ss_dssp HH--HHHHHHHHHEE-EEEEEEEEEE
T ss_pred HH--HHHHHHHhhcC-cCcEEEEEEC
Confidence 64 68999999999 9999998654
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.50 E-value=4.3e-14 Score=121.24 Aligned_cols=120 Identities=17% Similarity=0.184 Sum_probs=94.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCC--CCccEEEecchhcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAI--PKADAVFMKWILHD 256 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~--p~~D~i~~~~vlh~ 256 (350)
.++.+|||+|||+|.+++.+++. +.+++++|+ +.+++.+++ .-+++++.+|..+.. .+||+|+++...+
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~~- 195 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred CccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhccccc-
Confidence 57889999999999999988775 468999999 999988774 345778888887633 3599999864443
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCceeEEE
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRCKII 336 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~~~~ 336 (350)
....++++++++|+ |||+|++.+.... ..+++.+.++++||+.++..
T Consensus 196 ----~l~~l~~~~~~~Lk-pGG~lilSgil~~----------------------------~~~~v~~~~~~~Gf~~~~~~ 242 (254)
T d2nxca1 196 ----LHAALAPRYREALV-PGGRALLTGILKD----------------------------RAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp ----HHHHHHHHHHHHEE-EEEEEEEEEEEGG----------------------------GHHHHHHHHHHTTCEEEEEE
T ss_pred ----cHHHHHHHHHHhcC-CCcEEEEEecchh----------------------------hHHHHHHHHHHCCCEEEEEE
Confidence 35678999999999 9999998643210 15778889999999999887
Q ss_pred EcCC
Q 018775 337 SMPA 340 (350)
Q Consensus 337 ~~~~ 340 (350)
..+.
T Consensus 243 ~~~~ 246 (254)
T d2nxca1 243 AEGE 246 (254)
T ss_dssp EETT
T ss_pred EECC
Confidence 7654
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=2e-14 Score=125.14 Aligned_cols=92 Identities=13% Similarity=0.203 Sum_probs=82.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC-CCCC--ccEEEecchhccCCh
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD-AIPK--ADAVFMKWILHDWDD 259 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~-~~p~--~D~i~~~~vlh~~~~ 259 (350)
.++.+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ ++++ ||+|++.+++|+
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~--- 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK--- 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence 5678999999999999999999999999999999 899998876 6789999999998 7653 999999988886
Q ss_pred HHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 260 EACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 260 ~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
+++++++|| |||.+++..+.
T Consensus 160 ------~~e~~rvLk-pgG~l~~~~p~ 179 (268)
T d1p91a_ 160 ------AEELARVVK-PGGWVITATPG 179 (268)
T ss_dssp ------HHHHHHHEE-EEEEEEEEEEC
T ss_pred ------HHHHHHHhC-CCcEEEEEeeC
Confidence 567899999 99999998764
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=3.8e-14 Score=124.21 Aligned_cols=140 Identities=15% Similarity=0.136 Sum_probs=93.2
Q ss_pred CCCcceEEEecCCchHHHHHHHH----HCCCC--cEEEecc-hhHhhhCCC-------CCCeEE--EeccCC-------C
Q 018775 184 FDSIQSLADVGGGTGGALAEIVK----SYPHI--KGINFDL-PHVVATAPV-------CEGIFH--VGGDMF-------D 240 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~----~~p~~--~~~~~D~-~~~~~~a~~-------~~~i~~--~~~d~~-------~ 240 (350)
.++..+|||||||+|.++..+++ .+++. +++++|. +.+++.+++ ...+.+ ...++. .
T Consensus 38 ~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (280)
T d1jqea_ 38 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLE 117 (280)
T ss_dssp TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTT
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcc
Confidence 34566899999999999877665 45554 5689998 788876643 233433 333332 1
Q ss_pred CC--CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhc---CCccc
Q 018775 241 AI--PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHT---TGGKE 315 (350)
Q Consensus 241 ~~--p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 315 (350)
+. ..||+|++.+++||+++. ..+|++++++|+ |||.++|....... . ...++.. +.... .....
T Consensus 118 ~~~~~~fD~I~~~~~l~~~~d~--~~~l~~l~~~Lk-pgG~l~i~~~~~~~---~----~~~l~~~-~~~~~~~~~~~~~ 186 (280)
T d1jqea_ 118 KKELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLG-TNAKMLIIVVSGSS---G----WDKLWKK-YGSRFPQDDLCQY 186 (280)
T ss_dssp SSSCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEE-EEEEEEEEEECTTS---H----HHHHHHH-HGGGSCCCTTSCC
T ss_pred cCCCCceeEEEEccceecCCCH--HHHHHHHHhhCC-CCCEEEEEEecCcc---h----HHHHHHH-HHHhcCCCccccc
Confidence 22 249999999999999875 478999999999 99999987543211 0 0111111 11111 11345
Q ss_pred CCHHHHHHHHHhcCCceeE
Q 018775 316 RTEQEWMKLLEQGGFHRCK 334 (350)
Q Consensus 316 ~s~~e~~~ll~~aGf~~~~ 334 (350)
++.++|.++|++.||+.+.
T Consensus 187 ~~~~~~~~~L~~~G~~~~~ 205 (280)
T d1jqea_ 187 ITSDDLTQMLDNLGLKYEC 205 (280)
T ss_dssp CCHHHHHHHHHHHTCCEEE
T ss_pred CCHHHHHHHHHHCCCceEE
Confidence 6889999999999998654
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.40 E-value=1.9e-13 Score=116.59 Aligned_cols=126 Identities=13% Similarity=0.105 Sum_probs=93.5
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCC-
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIP- 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p- 243 (350)
..++..++ ..++.+|||+|||+|.++..|++. .|+.+++++|. ++.++.|++ ..++++..+|+.+..+
T Consensus 75 ~~Ii~~l~--i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~ 152 (250)
T d1yb2a1 75 SYIIMRCG--LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD 152 (250)
T ss_dssp ------CC--CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS
T ss_pred HHHHHHcC--CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccccc
Confidence 34566677 889999999999999999999987 68889999999 888887664 5789999999998544
Q ss_pred -CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHH
Q 018775 244 -KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWM 322 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~ 322 (350)
.||+|++ +++++. .+|++++++|| |||++++..+... ..+...
T Consensus 153 ~~fD~V~l-----d~p~p~--~~l~~~~~~LK-pGG~lv~~~P~i~----------------------------Qv~~~~ 196 (250)
T d1yb2a1 153 QMYDAVIA-----DIPDPW--NHVQKIASMMK-PGSVATFYLPNFD----------------------------QSEKTV 196 (250)
T ss_dssp CCEEEEEE-----CCSCGG--GSHHHHHHTEE-EEEEEEEEESSHH----------------------------HHHHHH
T ss_pred ceeeeeee-----cCCchH--HHHHHHHHhcC-CCceEEEEeCCcC----------------------------hHHHHH
Confidence 4999986 345443 57999999999 9999987432110 134455
Q ss_pred HHHHhcCCceeEEEE
Q 018775 323 KLLEQGGFHRCKIIS 337 (350)
Q Consensus 323 ~ll~~aGf~~~~~~~ 337 (350)
+.+++.||..+++..
T Consensus 197 ~~l~~~gf~~i~~~E 211 (250)
T d1yb2a1 197 LSLSASGMHHLETVE 211 (250)
T ss_dssp HHSGGGTEEEEEEEE
T ss_pred HHHHHCCCceeEEEE
Confidence 667888997766543
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.38 E-value=3.7e-13 Score=98.25 Aligned_cols=99 Identities=20% Similarity=0.352 Sum_probs=79.0
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCC---CCHHHHHhhcCCCCCCc---ccHHHHHHHhhcCCceee
Q 018775 7 LLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSP---ITLPQLASRIDSSCPDI---PYLARLMRMLVRKGIFAV 80 (350)
Q Consensus 7 ~~~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~---~t~~ela~~~~~~~~~~---~~l~~~L~~L~~~g~l~~ 80 (350)
..+..-.+++++.++..+.+|++|++|||+|.|..+|+| +|++|||.++++++.++ ..|.|+||.|++.|+|..
T Consensus 3 ~~~~~l~a~~L~~~~v~pMaLk~AieLgI~diI~~~G~~~~~ls~~ela~~lp~~~~~p~~~~~L~RiLRlLas~~vf~~ 82 (110)
T d1fp1d1 3 EDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTS 82 (110)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCCHHHHHHhCCCCCCCccHHHHHHHHHHHHHHcCcccc
Confidence 345677889999999999999999999999999886534 79999999988633333 369999999999999985
Q ss_pred cccCC-CC-CCCeEecChhchhhhcCC
Q 018775 81 HQSSD-GG-DETLYKMTHISKWLLHDS 105 (350)
Q Consensus 81 ~~~~~-~~-~~~~~~~t~~s~~l~~~~ 105 (350)
..... ++ ....|.+|+.+++|++++
T Consensus 83 ~~~~~~~g~~e~~Y~Ltpvsk~Lv~de 109 (110)
T d1fp1d1 83 TTRTIEDGGAERVYGLSMVGKYLVPDE 109 (110)
T ss_dssp EEEECTTSCEEEEEEECTTGGGGSTTC
T ss_pred ccccCCCCCeeeEEecchhhHhhcCCC
Confidence 53221 11 123699999999999875
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=3.6e-13 Score=120.26 Aligned_cols=111 Identities=12% Similarity=0.162 Sum_probs=90.2
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---------------CCCeEEEecc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---------------CEGIFHVGGD 237 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~i~~~~~d 237 (350)
..+++.+. +.++.+|||||||+|.++..+++.++..+++++|+ +.+++.|+. ..+|+++++|
T Consensus 141 ~~~~~~~~--l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd 218 (328)
T d1nw3a_ 141 AQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 218 (328)
T ss_dssp HHHHHHSC--CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred HHHHHHcC--CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence 45666676 78899999999999999999999998889999999 888776542 4679999999
Q ss_pred CCC-CCC----CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCC
Q 018775 238 MFD-AIP----KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQED 290 (350)
Q Consensus 238 ~~~-~~p----~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~ 290 (350)
+.+ ++. .+|+|++++.+| .++....|+++++.|| |||++++.+...+..
T Consensus 219 ~~~~~~~~~~~~advi~~~~~~f---~~~~~~~l~e~~r~LK-pGg~iv~~~~~~~~~ 272 (328)
T d1nw3a_ 219 FLSEEWRERIANTSVIFVNNFAF---GPEVDHQLKERFANMK-EGGRIVSSKPFAPLN 272 (328)
T ss_dssp TTSHHHHHHHHHCSEEEECCTTT---CHHHHHHHHHHHTTCC-TTCEEEESSCSSCTT
T ss_pred ccccccccccCcceEEEEcceec---chHHHHHHHHHHHhCC-CCcEEEEecccCCCC
Confidence 998 543 368888876665 3455688999999999 999999887665543
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=8.2e-14 Score=118.34 Aligned_cols=134 Identities=14% Similarity=0.081 Sum_probs=90.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC---CCC--CccEEE----
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD---AIP--KADAVF---- 249 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~---~~p--~~D~i~---- 249 (350)
..+.+|||||||+|..+..+++..+ .+++++|+ +.+++.|++ ..++.++.+|... +++ .||+|+
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~ 130 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence 4678999999999999999988654 47899999 899988764 4567777776543 344 377776
Q ss_pred -ecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhc
Q 018775 250 -MKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQG 328 (350)
Q Consensus 250 -~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~a 328 (350)
....++|+.+ ...++++++++|| |||+|++.+....... .............+.+...+.++
T Consensus 131 ~~~~~~~~~~~--~~~~~~~~~r~Lk-pGG~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~~a 193 (229)
T d1zx0a1 131 PLSEETWHTHQ--FNFIKNHAFRLLK-PGGVLTYCNLTSWGEL--------------MKSKYSDITIMFEETQVPALLEA 193 (229)
T ss_dssp CCBGGGTTTHH--HHHHHHTHHHHEE-EEEEEEECCHHHHHHH--------------TTTTCSCHHHHHHHHTHHHHHHT
T ss_pred ccccccccccC--HHHHHHHHHHHcC-CCcEEEEEecCCcchh--------------hhhhhhhcchhhhhHHHHHHHHC
Confidence 4677777554 4578999999999 9999986432211100 00000001111245667788899
Q ss_pred CCceeEEE
Q 018775 329 GFHRCKII 336 (350)
Q Consensus 329 Gf~~~~~~ 336 (350)
||+...+.
T Consensus 194 gF~~~~i~ 201 (229)
T d1zx0a1 194 GFRRENIR 201 (229)
T ss_dssp TCCGGGEE
T ss_pred CCeeEEEE
Confidence 99876553
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.37 E-value=1.7e-12 Score=109.28 Aligned_cols=142 Identities=13% Similarity=0.109 Sum_probs=100.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCCC--C----CCccEEEec
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFDA--I----PKADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~--~----p~~D~i~~~ 251 (350)
++++.+|||+|||+|.++..|++. .|+-+++++|+ +.+++.++. ...+..+..|...+ . +.+|+|++
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~- 149 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE- 149 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE-
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE-
Confidence 789999999999999999999987 48889999999 888776643 55677788887662 1 23666654
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCc
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFH 331 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~ 331 (350)
.+++. ++...+++++++.|+ |||++++.......+... .......+..++ .+.||+
T Consensus 150 -d~~~~--~~~~~~l~~~~~~Lk-pgG~lvi~~ka~~~~~~~-------------------~~~~v~~~v~~l-~~~gf~ 205 (227)
T d1g8aa_ 150 -DVAQP--TQAKILIDNAEVYLK-RGGYGMIAVKSRSIDVTK-------------------EPEQVFREVERE-LSEYFE 205 (227)
T ss_dssp -CCCST--THHHHHHHHHHHHEE-EEEEEEEEEEGGGTCTTS-------------------CHHHHHHHHHHH-HHTTSE
T ss_pred -Ecccc--chHHHHHHHHHHhcc-cCCeEEEEEECCccCCCC-------------------CHHHHHHHHHHH-HHcCCE
Confidence 34432 345678999999999 999999875443332211 111112334444 456999
Q ss_pred eeEEEEcCCc---eeEEEEeeC
Q 018775 332 RCKIISMPAL---YSIIEAYPQ 350 (350)
Q Consensus 332 ~~~~~~~~~~---~~vi~~~~~ 350 (350)
.++.+.+.++ +.++.++|.
T Consensus 206 iie~i~L~p~~~~H~~vv~rK~ 227 (227)
T d1g8aa_ 206 VIERLNLEPYEKDHALFVVRKT 227 (227)
T ss_dssp EEEEEECTTTSSSEEEEEEECC
T ss_pred EEEEEcCCCCCCceEEEEEEeC
Confidence 9999887543 789999883
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=4e-12 Score=109.70 Aligned_cols=134 Identities=19% Similarity=0.251 Sum_probs=103.1
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC--CccEEEec--ch
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP--KADAVFMK--WI 253 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p--~~D~i~~~--~v 253 (350)
..+.+|||+|||+|..++.++..+|+.+++++|. +.+++.|++ ..+|+++.+|++++.+ .||+|+++ ++
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhh
Confidence 4568899999999999999999999999999999 888887765 3579999999999654 49999995 22
Q ss_pred -----------hccCC----------hHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCC
Q 018775 254 -----------LHDWD----------DEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTG 312 (350)
Q Consensus 254 -----------lh~~~----------~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (350)
+.+-| -.....+++++.+.|+ |||.+++ |. +
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~-~~G~l~l-Ei-------------------------g- 238 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALV-SGGFLLL-EH-------------------------G- 238 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEE-EEEEEEE-EC-------------------------C-
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcC-CCCEEEE-EE-------------------------C-
Confidence 21111 0234578999999999 9999886 21 0
Q ss_pred cccCCHHHHHHHHHhcCCceeEEEE-cCCceeEEEEe
Q 018775 313 GKERTEQEWMKLLEQGGFHRCKIIS-MPALYSIIEAY 348 (350)
Q Consensus 313 ~~~~s~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~ 348 (350)
. ...+...+++++.||..++++. +.+.-.++.|+
T Consensus 239 -~-~q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~r 273 (274)
T d2b3ta1 239 -W-QQGEAVRQAFILAGYHDVETCRDYGDNERVTLGR 273 (274)
T ss_dssp -S-SCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred -c-hHHHHHHHHHHHCCCCeEEEEECCCCCceEEEEe
Confidence 0 1257788999999999887765 45666677765
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.37 E-value=5.1e-13 Score=97.20 Aligned_cols=99 Identities=28% Similarity=0.392 Sum_probs=78.6
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCC--CCCCHHHHHhhcCCCCCC-cccHHHHHHHhhcCCceeeccc
Q 018775 7 LLRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHG--SPITLPQLASRIDSSCPD-IPYLARLMRMLVRKGIFAVHQS 83 (350)
Q Consensus 7 ~~~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~--~~~t~~ela~~~~~~~~~-~~~l~~~L~~L~~~g~l~~~~~ 83 (350)
..+..-..++++.+++.+.+|++|++|||+|.|...| .++|..|||.++...+++ +..++|+||.|++.|+|.....
T Consensus 4 dee~~l~a~~L~~~~v~pmaLk~AieLgI~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~vf~~~~~ 83 (107)
T d1kyza1 4 DEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVR 83 (107)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHcCCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHHHhcCceEEeee
Confidence 3455567789999999999999999999999998764 467999999999884333 4579999999999999986432
Q ss_pred C-CCC-CCCeEecChhchhhhcCC
Q 018775 84 S-DGG-DETLYKMTHISKWLLHDS 105 (350)
Q Consensus 84 ~-~~~-~~~~~~~t~~s~~l~~~~ 105 (350)
. .+| ....|.+||.|++|++++
T Consensus 84 ~~~dg~~~~~Y~LTpvsk~Lv~de 107 (107)
T d1kyza1 84 TQQDGKVQRLYGLATVAKYLVKNE 107 (107)
T ss_dssp ECTTSCEEEEEEECHHHHHHSCCT
T ss_pred cCCCCCeeeEEecchhHHhhcCCC
Confidence 1 111 123699999999998763
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.36 E-value=5.9e-13 Score=114.91 Aligned_cols=127 Identities=19% Similarity=0.235 Sum_probs=99.3
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIP 243 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p 243 (350)
+..++..++ ..++.+|||+|||+|.++..+++.. |+.+++++|. +++++.|++ .+++.+..+|+...++
T Consensus 92 ~~~Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~ 169 (266)
T d1o54a_ 92 SSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD 169 (266)
T ss_dssp HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS
T ss_pred HHHHHHhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccccc
Confidence 345677777 8999999999999999999999874 8889999999 898888765 4789999999876443
Q ss_pred --CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHH
Q 018775 244 --KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEW 321 (350)
Q Consensus 244 --~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~ 321 (350)
.+|.|+ ++++++. .+|++++++|| |||++++..+... ..++.
T Consensus 170 ~~~~D~V~-----~d~p~p~--~~l~~~~~~LK-pGG~lv~~~P~~~----------------------------Qv~~~ 213 (266)
T d1o54a_ 170 EKDVDALF-----LDVPDPW--NYIDKCWEALK-GGGRFATVCPTTN----------------------------QVQET 213 (266)
T ss_dssp CCSEEEEE-----ECCSCGG--GTHHHHHHHEE-EEEEEEEEESSHH----------------------------HHHHH
T ss_pred ccceeeeE-----ecCCCHH--HHHHHHHhhcC-CCCEEEEEeCccc----------------------------HHHHH
Confidence 488775 3666664 67999999999 9999997542210 13556
Q ss_pred HHHHHhcCCceeEEEE
Q 018775 322 MKLLEQGGFHRCKIIS 337 (350)
Q Consensus 322 ~~ll~~aGf~~~~~~~ 337 (350)
.+.+++.||..+++..
T Consensus 214 ~~~l~~~gF~~i~~~E 229 (266)
T d1o54a_ 214 LKKLQELPFIRIEVWE 229 (266)
T ss_dssp HHHHHHSSEEEEEEEC
T ss_pred HHHHHHCCceeEEEEE
Confidence 6778889998777654
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.35 E-value=4.2e-13 Score=110.07 Aligned_cols=99 Identities=19% Similarity=0.305 Sum_probs=80.9
Q ss_pred HHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-C--CCC
Q 018775 176 LVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-A--IPK 244 (350)
Q Consensus 176 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~--~p~ 244 (350)
++..+. ..++.+|||||||+|.++..+++.. .+++++|. +++++.+++ .++|+++++|+.+ . .+.
T Consensus 25 il~~l~--~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~ 100 (186)
T d1l3ia_ 25 IMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (186)
T ss_dssp HHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHhcC--CCCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCC
Confidence 444555 7789999999999999999998864 47899999 899888765 4799999999887 2 345
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
||+|++....++ ...+++++.+.|+ |||++++..
T Consensus 101 ~D~v~~~~~~~~-----~~~~~~~~~~~Lk-pgG~lvi~~ 134 (186)
T d1l3ia_ 101 IDIAVVGGSGGE-----LQEILRIIKDKLK-PGGRIIVTA 134 (186)
T ss_dssp EEEEEESCCTTC-----HHHHHHHHHHTEE-EEEEEEEEE
T ss_pred cCEEEEeCcccc-----chHHHHHHHHHhC-cCCEEEEEe
Confidence 999999876654 3468999999999 999998753
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.34 E-value=7e-13 Score=113.79 Aligned_cols=105 Identities=16% Similarity=0.217 Sum_probs=87.6
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC---------CCCeEEEeccCCC-
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV---------CEGIFHVGGDMFD- 240 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~~i~~~~~d~~~- 240 (350)
+..++..++ ..++.+|||+|||+|.++..|++. .|+.+++.+|. +++++.|++ .+++.++.+|+.+
T Consensus 85 ~s~Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~ 162 (264)
T d1i9ga_ 85 AAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 162 (264)
T ss_dssp HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred HHHHHHHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc
Confidence 345667777 899999999999999999999987 79999999999 888887764 5789999999987
Q ss_pred CCC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 241 AIP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 241 ~~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
+++ .||.|++ |++++. .++.+++++|| |||++++..+..
T Consensus 163 ~~~~~~fDaV~l-----dlp~P~--~~l~~~~~~Lk-pGG~lv~~~P~i 203 (264)
T d1i9ga_ 163 ELPDGSVDRAVL-----DMLAPW--EVLDAVSRLLV-AGGVLMVYVATV 203 (264)
T ss_dssp CCCTTCEEEEEE-----ESSCGG--GGHHHHHHHEE-EEEEEEEEESSH
T ss_pred cccCCCcceEEE-----ecCCHH--HHHHHHHhccC-CCCEEEEEeCcc
Confidence 565 4999986 566664 67999999999 999998765433
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.31 E-value=1.2e-12 Score=109.42 Aligned_cols=99 Identities=16% Similarity=0.292 Sum_probs=81.5
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHC-CCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC--
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY-PHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP-- 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p-- 243 (350)
..+++.+. .+++.+|||||||+|..+..+++.. ++.+++++|. +++++.+++ ..++.++.+|..+..+
T Consensus 65 a~~l~~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~ 142 (213)
T d1dl5a1 65 ALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF 142 (213)
T ss_dssp HHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHhhh--ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccc
Confidence 34566676 8899999999999999999999874 6788999998 888887765 5788999999887322
Q ss_pred -CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 244 -KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 244 -~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
+||+|++...++++++ ++.+.|+ |||+|++.
T Consensus 143 ~~fD~I~~~~~~~~~p~--------~l~~~Lk-pGG~lv~p 174 (213)
T d1dl5a1 143 SPYDVIFVTVGVDEVPE--------TWFTQLK-EGGRVIVP 174 (213)
T ss_dssp CCEEEEEECSBBSCCCH--------HHHHHEE-EEEEEEEE
T ss_pred cchhhhhhhccHHHhHH--------HHHHhcC-CCcEEEEE
Confidence 4999999999998765 3567799 99999873
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.30 E-value=2.9e-12 Score=106.08 Aligned_cols=98 Identities=18% Similarity=0.246 Sum_probs=78.2
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C--CC--CccEEEecch
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A--IP--KADAVFMKWI 253 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~p--~~D~i~~~~v 253 (350)
....|||||||+|.++..+++.+|+..++++|+ +.++..+.+ ..+|.++.+|+.. . ++ .+|.|++.+.
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence 356899999999999999999999999999998 777766543 5689999999876 2 44 3898887766
Q ss_pred hccCChHH------HHHHHHHHHhhCCCCCceEEEEe
Q 018775 254 LHDWDDEA------CVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 254 lh~~~~~~------~~~~L~~~~~~L~~pgG~lli~e 284 (350)
..+..... ...+|+.++++|+ |||.|.|..
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~Lk-pgG~l~i~T 144 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMG-KGGSIHFKT 144 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHT-TSCEEEEEE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCC-CCcEEEEEE
Confidence 65433221 1478999999999 999998864
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.28 E-value=1.2e-12 Score=115.16 Aligned_cols=97 Identities=19% Similarity=0.143 Sum_probs=75.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC---CC---CCcc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD---AI---PKAD 246 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~~---p~~D 246 (350)
..+..+|||||||+|..+..|+++ +.+++++|+ +++++.|++ ..+..+...|+.. +. ..||
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd 131 (292)
T d1xvaa_ 54 QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 131 (292)
T ss_dssp HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCce
Confidence 455789999999999999999987 568999999 899987754 1234455566543 12 2499
Q ss_pred EEEec-chhccCCh-----HHHHHHHHHHHhhCCCCCceEEEE
Q 018775 247 AVFMK-WILHDWDD-----EACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 247 ~i~~~-~vlh~~~~-----~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
+|++. .+++|+++ ++...+|++++++|+ |||.|++-
T Consensus 132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~ 173 (292)
T d1xvaa_ 132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVR-PGGLLVID 173 (292)
T ss_dssp EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEE-EEEEEEEE
T ss_pred EEEEecCchhhcCCcccChHHHHHHHHHHHHHcC-cCcEEEEe
Confidence 98874 68888764 457789999999999 99998873
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.27 E-value=4.7e-12 Score=114.84 Aligned_cols=112 Identities=13% Similarity=0.226 Sum_probs=87.3
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---------------CCCeEE-Ee
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---------------CEGIFH-VG 235 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~i~~-~~ 235 (350)
+..+++.++ +.++.+|||||||+|.++..+++.++..+++|+|+ +.+++.|+. ...+.+ ..
T Consensus 205 i~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~ 282 (406)
T d1u2za_ 205 LSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 282 (406)
T ss_dssp HHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred HHHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence 456777777 88999999999999999999999998778999999 888887753 223343 45
Q ss_pred ccCCC-C-----CCCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCC
Q 018775 236 GDMFD-A-----IPKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQED 290 (350)
Q Consensus 236 ~d~~~-~-----~p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~ 290 (350)
+++.. + ++.+|++++.+.+| +++....|+++++.|| |||+|++.+...+..
T Consensus 283 ~~f~~~~~~d~~~~~adVV~inn~~f---~~~l~~~L~ei~r~LK-PGGrIVs~~~~~~~~ 339 (406)
T d1u2za_ 283 KSFVDNNRVAELIPQCDVILVNNFLF---DEDLNKKVEKILQTAK-VGCKIISLKSLRSLT 339 (406)
T ss_dssp SCSTTCHHHHHHGGGCSEEEECCTTC---CHHHHHHHHHHHTTCC-TTCEEEESSCSSCTT
T ss_pred echhhccccccccccceEEEEecccC---chHHHHHHHHHHHhcC-CCcEEEEecccCCCc
Confidence 55655 2 23588999877554 4567789999999999 999999887666544
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=1.7e-11 Score=103.04 Aligned_cols=100 Identities=19% Similarity=0.092 Sum_probs=80.2
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC-----------CCCeEEEeccCCCC
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV-----------CEGIFHVGGDMFDA 241 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~~ 241 (350)
.+++.+....+++.+|||||||+|..+..+++. .|..+++++|. +++++.+++ ..++.++.+|....
T Consensus 65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~ 144 (224)
T d1i1na_ 65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG 144 (224)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc
Confidence 455555322678999999999999999988875 67889999998 888887753 46899999998873
Q ss_pred CC---CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 242 IP---KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 242 ~p---~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
.+ +||+|++...+++.++ .+.+.|+ |||+|++.
T Consensus 145 ~~~~~~fD~I~~~~~~~~ip~--------~l~~~Lk-pGG~LV~p 180 (224)
T d1i1na_ 145 YAEEAPYDAIHVGAAAPVVPQ--------ALIDQLK-PGGRLILP 180 (224)
T ss_dssp CGGGCCEEEEEECSBBSSCCH--------HHHHTEE-EEEEEEEE
T ss_pred cchhhhhhhhhhhcchhhcCH--------HHHhhcC-CCcEEEEE
Confidence 22 4999999999998764 3667899 99999983
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.18 E-value=6e-11 Score=98.04 Aligned_cols=97 Identities=20% Similarity=0.358 Sum_probs=75.8
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C--CC--CccEEEecch
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A--IP--KADAVFMKWI 253 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~p--~~D~i~~~~v 253 (350)
....|||||||+|.++..+++.+|+..++++|+ +.++..+.+ ..++.++.+|+.. . +| .+|.|++.+
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f- 109 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF- 109 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES-
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc-
Confidence 456899999999999999999999999999998 777766543 5689999999876 2 44 388887644
Q ss_pred hccCChHH-------HHHHHHHHHhhCCCCCceEEEEe
Q 018775 254 LHDWDDEA-------CVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 254 lh~~~~~~-------~~~~L~~~~~~L~~pgG~lli~e 284 (350)
...|+... ...+|+.++++|+ |||.|.+..
T Consensus 110 PdPw~K~~h~krRl~~~~~l~~~~~~Lk-pgG~l~i~T 146 (204)
T d1yzha1 110 SDPWPKKRHEKRRLTYKTFLDTFKRILP-ENGEIHFKT 146 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSC-TTCEEEEEE
T ss_pred cccccchhhhhhhhhHHHHHHHHHHhCC-CCcEEEEEE
Confidence 22343321 1478999999999 999998754
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=3e-11 Score=106.66 Aligned_cols=105 Identities=17% Similarity=0.213 Sum_probs=83.6
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC-----------------CCCeEE
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV-----------------CEGIFH 233 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~-----------------~~~i~~ 233 (350)
+..++..++ ..++.+|||+|||+|.++..|++. .|+.+++.+|+ +++++.|++ .+++++
T Consensus 87 ~~~Il~~l~--i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~ 164 (324)
T d2b25a1 87 INMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF 164 (324)
T ss_dssp HHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred HHHHHHHhC--CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeE
Confidence 345677777 899999999999999999999987 68899999999 888776643 468999
Q ss_pred EeccCCCC---CC--CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 234 VGGDMFDA---IP--KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 234 ~~~d~~~~---~p--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
..+|+... .+ .||.|++ +++++. .+|.+++++|| |||+|++.-+..
T Consensus 165 ~~~di~~~~~~~~~~~fD~V~L-----D~p~P~--~~l~~~~~~LK-pGG~lv~~~P~i 215 (324)
T d2b25a1 165 IHKDISGATEDIKSLTFDAVAL-----DMLNPH--VTLPVFYPHLK-HGGVCAVYVVNI 215 (324)
T ss_dssp EESCTTCCC-------EEEEEE-----CSSSTT--TTHHHHGGGEE-EEEEEEEEESSH
T ss_pred EecchhhcccccCCCCcceEee-----cCcCHH--HHHHHHHHhcc-CCCEEEEEeCCH
Confidence 99998862 22 3999886 455543 46999999999 999999866433
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.10 E-value=5e-11 Score=105.73 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=74.4
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCC-------CCCCeEEEeccCCC-CCC--CccEEEecchhc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAP-------VCEGIFHVGGDMFD-AIP--KADAVFMKWILH 255 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~-------~~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh 255 (350)
++.+|||||||+|.++..+++..+ .+++++|..+....++ ..++|+++.+|+.+ +.+ .+|+|++..+.|
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 578999999999999998888654 3788999843333322 16889999999998 555 499999887777
Q ss_pred cCChH-HHHHHHHHHHhhCCCCCceEEE
Q 018775 256 DWDDE-ACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 256 ~~~~~-~~~~~L~~~~~~L~~pgG~lli 282 (350)
++..+ ....++..+.+.|+ |||+++-
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lk-p~G~iiP 138 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLA-PDGLIFP 138 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEE-EEEEEES
T ss_pred eeccHHHHHHHHHHHHhcCC-CCeEEEe
Confidence 65443 46789999999999 9999874
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.07 E-value=9.4e-11 Score=98.04 Aligned_cols=96 Identities=16% Similarity=0.107 Sum_probs=77.3
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCCCCC---Ccc
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFDAIP---KAD 246 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~~~p---~~D 246 (350)
.+++.++ ++++.+|||||||+|.++..|++.. .+++.+|. ++.++.+++ ..+++++.+|.....+ +||
T Consensus 61 ~ml~~L~--l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD 136 (224)
T d1vbfa_ 61 FMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (224)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHHhh--hcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHH
Confidence 4566777 8899999999999999998888864 47888888 877776654 6789999999887332 499
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
+|++...+++.++ .+.+.|+ |||+|++.
T Consensus 137 ~Iiv~~a~~~ip~--------~l~~qLk-~GGrLV~p 164 (224)
T d1vbfa_ 137 RVVVWATAPTLLC--------KPYEQLK-EGGIMILP 164 (224)
T ss_dssp EEEESSBBSSCCH--------HHHHTEE-EEEEEEEE
T ss_pred HHHhhcchhhhhH--------HHHHhcC-CCCEEEEE
Confidence 9999988887764 3556799 99999873
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.07 E-value=8.4e-11 Score=104.81 Aligned_cols=95 Identities=20% Similarity=0.215 Sum_probs=74.4
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCCC-------CCCeEEEeccCCC-CCC--CccEEEecchhc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAPV-------CEGIFHVGGDMFD-AIP--KADAVFMKWILH 255 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~i~~~~~d~~~-~~p--~~D~i~~~~vlh 255 (350)
++.+|||||||+|.++..++++.. .+++++|..++++.+++ .++++++.+|+.+ ++| .+|+|++..+.+
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 578999999999999988777643 47899998555554432 6789999999998 665 399999977766
Q ss_pred cCCh-HHHHHHHHHHHhhCCCCCceEEE
Q 018775 256 DWDD-EACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 256 ~~~~-~~~~~~L~~~~~~L~~pgG~lli 282 (350)
+... .....++..+.++|+ |||+++-
T Consensus 117 ~~~~e~~~~~~~~a~~r~Lk-pgG~iiP 143 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYLV-EGGLIFP 143 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEE-EEEEEES
T ss_pred eeccchhHHHHHHHHHhccC-CCeEEEe
Confidence 6543 345678888999999 9998863
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=2.3e-10 Score=101.12 Aligned_cols=97 Identities=20% Similarity=0.179 Sum_probs=75.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC------CCCCeEEEeccCCC-CCC--CccEEEecch
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP------VCEGIFHVGGDMFD-AIP--KADAVFMKWI 253 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~i~~~~~d~~~-~~p--~~D~i~~~~v 253 (350)
..++.+|||||||+|.++..++++.+ .+++++|. +.+....+ ..++|+++.+|..+ +.+ .+|+|++..+
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~ 111 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 111 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence 34678999999999999998888755 47899998 54432111 16789999999998 554 4999999888
Q ss_pred hccCChH-HHHHHHHHHHhhCCCCCceEEE
Q 018775 254 LHDWDDE-ACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 254 lh~~~~~-~~~~~L~~~~~~L~~pgG~lli 282 (350)
.|+...+ ....++....+.|+ |||+++.
T Consensus 112 ~~~~~~e~~~~~~~~a~~~~Lk-p~G~iip 140 (311)
T d2fyta1 112 GYFLLFESMLDSVLYAKNKYLA-KGGSVYP 140 (311)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEE-EEEEEES
T ss_pred eeecccccccHHHHHHHHhcCC-CCcEEec
Confidence 7776554 35567777888999 9999874
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.97 E-value=3.3e-10 Score=92.87 Aligned_cols=97 Identities=14% Similarity=0.158 Sum_probs=73.8
Q ss_pred CCcceEEEecCCchHHHHH----HHHH----CCCCcEEEecc-hhHhhhCCC----------------------------
Q 018775 185 DSIQSLADVGGGTGGALAE----IVKS----YPHIKGINFDL-PHVVATAPV---------------------------- 227 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~----l~~~----~p~~~~~~~D~-~~~~~~a~~---------------------------- 227 (350)
.+..+|+++|||+|.-.-. +... .+.+++++.|+ +.+++.|+.
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 4578999999999974333 3332 13456889998 788876642
Q ss_pred ---------CCCeEEEeccCCCC-C---CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 228 ---------CEGIFHVGGDMFDA-I---PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 228 ---------~~~i~~~~~d~~~~-~---p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
...+.+...+...+ . .+||+|+|.+||++++++...+++++++++|+ |||.|++
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~-pGG~L~l 169 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLK-PDGLLFA 169 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEE-EEEEEEE
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhC-CCcEEEE
Confidence 13355666666652 2 24999999999999999999999999999999 9999887
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.92 E-value=6.5e-10 Score=92.24 Aligned_cols=98 Identities=16% Similarity=0.207 Sum_probs=78.1
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCCC---
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAIP--- 243 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~p--- 243 (350)
..+++.++ .+++.+|||||||+|..+..+++-. +.+++++|. +++++.+++ ..++.++.+|..+..|
T Consensus 68 a~ml~~L~--l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~ 144 (215)
T d1jg1a_ 68 AIMLEIAN--LKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 144 (215)
T ss_dssp HHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhhc--cCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccC
Confidence 34566667 8899999999999999999888754 456888887 888887764 5899999999988333
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
+||+|++...+.+.|+. +.+.|+ |||+|++.
T Consensus 145 pfD~Iiv~~a~~~ip~~--------l~~qL~-~gGrLv~p 175 (215)
T d1jg1a_ 145 PYDVIIVTAGAPKIPEP--------LIEQLK-IGGKLIIP 175 (215)
T ss_dssp CEEEEEECSBBSSCCHH--------HHHTEE-EEEEEEEE
T ss_pred cceeEEeecccccCCHH--------HHHhcC-CCCEEEEE
Confidence 59999999888876653 455689 99999873
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.90 E-value=9.4e-10 Score=89.64 Aligned_cols=115 Identities=18% Similarity=0.283 Sum_probs=89.5
Q ss_pred hHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCC-C---
Q 018775 172 VMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFD-A--- 241 (350)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~-~--- 241 (350)
+..++++.+. ..++..+||++||+|..+..+++++|+.+++++|. +++++.+++ ..++.++.+++.+ +
T Consensus 11 ll~evi~~l~--~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~ 88 (192)
T d1m6ya2 11 MVREVIEFLK--PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL 88 (192)
T ss_dssp THHHHHHHHC--CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH
T ss_pred HHHHHHHhhC--CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHH
Confidence 4566777777 67889999999999999999999999999999999 999988764 6789999999875 2
Q ss_pred ----CCCccEEEecchh-----ccC--ChHHHHHHHHHHHhhCCCCCceEEEEeeeecC
Q 018775 242 ----IPKADAVFMKWIL-----HDW--DDEACVKILKNCRQAIPDKSGKLVLVEIVVQE 289 (350)
Q Consensus 242 ----~p~~D~i~~~~vl-----h~~--~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~ 289 (350)
...+|.|++-.-+ -.- .-......|..+.++|+ |||+++++.+...+
T Consensus 89 ~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk-~gG~l~ii~f~s~E 146 (192)
T d1m6ya2 89 KTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLN-PGGRIVVISFHSLE 146 (192)
T ss_dssp HHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEE-EEEEEEEEESSHHH
T ss_pred HHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcC-CCCeeeeeccccHH
Confidence 2358888763222 110 12234578999999999 99999998755533
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.88 E-value=1.3e-09 Score=90.96 Aligned_cols=100 Identities=15% Similarity=0.192 Sum_probs=77.1
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHH------CCCCcEEEecc-hhHhhhCCC-----------CCCeEEEec
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS------YPHIKGINFDL-PHVVATAPV-----------CEGIFHVGG 236 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~------~p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~ 236 (350)
.+++.+...++++.+|||||||+|..+..+++. .+..+++.+|. ++.++.+++ ..++.++.+
T Consensus 69 ~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~ 148 (223)
T d1r18a_ 69 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG 148 (223)
T ss_dssp HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec
Confidence 455555222778999999999999999887764 24557899998 888777653 358999999
Q ss_pred cCCCCC---CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEE
Q 018775 237 DMFDAI---PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 237 d~~~~~---p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
|..+.. .+||+|++...+.+.|+ .+.+.|+ |||++++.
T Consensus 149 d~~~~~~~~~~fD~Iiv~~a~~~~p~--------~l~~~Lk-~gG~lV~p 189 (223)
T d1r18a_ 149 DGRKGYPPNAPYNAIHVGAAAPDTPT--------ELINQLA-SGGRLIVP 189 (223)
T ss_dssp CGGGCCGGGCSEEEEEECSCBSSCCH--------HHHHTEE-EEEEEEEE
T ss_pred ccccccccccceeeEEEEeechhchH--------HHHHhcC-CCcEEEEE
Confidence 998832 25999999999987664 3567889 99999873
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.87 E-value=2.7e-09 Score=91.29 Aligned_cols=120 Identities=12% Similarity=0.059 Sum_probs=90.4
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CC-CCccEEEecch
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AI-PKADAVFMKWI 253 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~-p~~D~i~~~~v 253 (350)
..++.+|||+|||+|.+++.+++. +..+++.+|+ |.+++.+++ .++|+++.+|..+ .. ..||.|++..-
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p 183 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 183 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC
Confidence 357899999999999999999987 4568999999 888887654 6789999999988 32 24999987422
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCCcee
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGFHRC 333 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf~~~ 333 (350)
.....+|.++.+.|+ |||.|.+.+....... .....+.+.++..+.||.+.
T Consensus 184 ------~~~~~~l~~a~~~l~-~gG~lh~~~~~~~~~~----------------------~~~~~e~~~~~~~~~g~~v~ 234 (260)
T d2frna1 184 ------VRTHEFIPKALSIAK-DGAIIHYHNTVPEKLM----------------------PREPFETFKRITKEYGYDVE 234 (260)
T ss_dssp ------SSGGGGHHHHHHHEE-EEEEEEEEEEEEGGGT----------------------TTTTHHHHHHHHHHTTCEEE
T ss_pred ------CchHHHHHHHHhhcC-CCCEEEEEeccccccc----------------------hhhHHHHHHHHHHHcCCceE
Confidence 123467888999999 9999987765543311 11235667788889999764
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=4.9e-08 Score=82.84 Aligned_cols=71 Identities=10% Similarity=-0.042 Sum_probs=57.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC----C-----CCccE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA----I-----PKADA 247 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~----~-----p~~D~ 247 (350)
....++||||||+|..+..|+++.|+++++++|+ +.+++.|++ .+++.++..+.... . ..||+
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 4467999999999999999999999999999999 888888775 67898887654431 1 13999
Q ss_pred EEecchhc
Q 018775 248 VFMKWILH 255 (350)
Q Consensus 248 i~~~~vlh 255 (350)
|+++-=.+
T Consensus 140 ivsNPPY~ 147 (250)
T d2h00a1 140 CMCNPPFF 147 (250)
T ss_dssp EEECCCCC
T ss_pred EEecCccc
Confidence 99975544
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.67 E-value=1.9e-08 Score=86.08 Aligned_cols=131 Identities=15% Similarity=0.240 Sum_probs=88.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCCC----CccEEEec-
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAIP----KADAVFMK- 251 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~p----~~D~i~~~- 251 (350)
.+..+|+|+|||+|..+..+++ +|+.+++++|. +.+++.|++ .+++.+..+|++++.+ .||+|+++
T Consensus 109 ~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNP 187 (271)
T d1nv8a_ 109 YGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNP 187 (271)
T ss_dssp HTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECC
T ss_pred ccccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcc
Confidence 3456899999999999999874 69999999999 888887764 5789999999998533 49999985
Q ss_pred -chh---------ccCC------hHHHHHHHHH-HHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcc
Q 018775 252 -WIL---------HDWD------DEACVKILKN-CRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGK 314 (350)
Q Consensus 252 -~vl---------h~~~------~~~~~~~L~~-~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (350)
++- -|-| .++-..++++ +.+.|+ |||.+++ |.-.
T Consensus 188 PYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~-~~G~l~~-Eig~--------------------------- 238 (271)
T d1nv8a_ 188 PYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDT-SGKIVLM-EIGE--------------------------- 238 (271)
T ss_dssp CCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCC-TTCEEEE-ECCT---------------------------
T ss_pred cccCcccccceeeeeccccccccccchHHHHHHHHHHhcC-CCCEEEE-EECH---------------------------
Confidence 111 0101 1111123333 446788 9987654 3211
Q ss_pred cCCHHHHHHHHHhcCCceeEEEEcCCceeEEEEeeC
Q 018775 315 ERTEQEWMKLLEQGGFHRCKIISMPALYSIIEAYPQ 350 (350)
Q Consensus 315 ~~s~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~~ 350 (350)
-..+.+.+++++.|| .....+...++.++|+
T Consensus 239 -~Q~~~v~~l~~~~g~----~kDl~g~~R~~~~~k~ 269 (271)
T d1nv8a_ 239 -DQVEELKKIVSDTVF----LKDSAGKYRFLLLNRR 269 (271)
T ss_dssp -TCHHHHTTTSTTCEE----EECTTSSEEEEEEECC
T ss_pred -HHHHHHHHHHHhCCE----EeccCCCcEEEEEEEc
Confidence 014556666777776 3456677788888875
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.56 E-value=2.3e-08 Score=78.35 Aligned_cols=92 Identities=14% Similarity=0.071 Sum_probs=67.6
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C--CCCccEEEecch
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A--IPKADAVFMKWI 253 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~--~p~~D~i~~~~v 253 (350)
.+.+|||+|||+|.+++..+.+... +++.+|. +.+++.+++ .++++++++|..+ + ...||+|++---
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~-~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMS-AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcc-eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 5789999999999999988887654 8999998 888776543 5789999999876 2 235999988321
Q ss_pred hccCChHHHHHHHHHHH--hhCCCCCceEEE
Q 018775 254 LHDWDDEACVKILKNCR--QAIPDKSGKLVL 282 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~--~~L~~pgG~lli 282 (350)
. .......++..+. +.|+ |+|.+++
T Consensus 93 y---~~~~~~~~l~~i~~~~~L~-~~g~iii 119 (152)
T d2esra1 93 Y---AKETIVATIEALAAKNLLS-EQVMVVC 119 (152)
T ss_dssp S---HHHHHHHHHHHHHHTTCEE-EEEEEEE
T ss_pred h---ccchHHHHHHHHHHCCCcC-CCeEEEE
Confidence 1 1233445666654 4689 9888765
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.53 E-value=2.8e-07 Score=80.44 Aligned_cols=99 Identities=19% Similarity=0.215 Sum_probs=75.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----------CCCeEEEeccCCC---CCC-CccE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----------CEGIFHVGGDMFD---AIP-KADA 247 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~i~~~~~d~~~---~~p-~~D~ 247 (350)
.+.+.+||.||+|.|..+..+++..|..+++++|+ |.+++.+++ .+|++++.+|..+ ..+ .||+
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence 35678999999999999999998878889999999 888886653 5799999999987 223 4999
Q ss_pred EEecch--hc-cCChH--HHHHHHHHHHhhCCCCCceEEEE
Q 018775 248 VFMKWI--LH-DWDDE--ACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 248 i~~~~v--lh-~~~~~--~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
|++-.. .. .-+.. -..++++.+++.|+ |||.+++.
T Consensus 155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~-p~Gvlv~~ 194 (312)
T d1uira_ 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLN-PGGVMGMQ 194 (312)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEE-EEEEEEEE
T ss_pred EEEeCCCcccccchhhhhhhHHHHHHHHHhcC-CCceEEEe
Confidence 996321 11 00111 12578999999999 99988763
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.48 E-value=5.4e-08 Score=79.09 Aligned_cols=65 Identities=25% Similarity=0.287 Sum_probs=53.9
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCCCCCCccEEEec
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFDAIPKADAVFMK 251 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~~p~~D~i~~~ 251 (350)
.+.+|||+|||+|.+++.++...+ .+++++|. +.+++.+++ ..++.++.+|+.+....||+|+++
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~N 114 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMN 114 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEEC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeC
Confidence 478999999999999988777644 47999999 888888776 667999999998744469999985
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.44 E-value=7.9e-08 Score=84.80 Aligned_cols=98 Identities=21% Similarity=0.204 Sum_probs=73.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC-------CCCccEEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA-------IPKADAVF 249 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~-------~p~~D~i~ 249 (350)
+++.+|||+|||+|.++..++.... .+++.+|+ +.+++.+++ .++++++.+|+++. ...||+|+
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 5688999999999999999988754 48999999 888887764 46899999998861 12499999
Q ss_pred ec---chhccCChH----HHHHHHHHHHhhCCCCCceEEEEe
Q 018775 250 MK---WILHDWDDE----ACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 250 ~~---~vlh~~~~~----~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+. ...+.-... .-..+++.+.++|+ |||.|+...
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~-pGG~lv~~s 263 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVK-DGGILVTCS 263 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEE-EEEEEEEEE
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcC-CCcEEEEEe
Confidence 83 221111111 23458889999999 999988754
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=1.2e-07 Score=78.66 Aligned_cols=98 Identities=14% Similarity=0.169 Sum_probs=76.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C-------CCCc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A-------IPKA 245 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~-------~p~~ 245 (350)
..+..+|||||||+|.-+..+++..| +.+++.+|. ++..+.|++ .++++++.||..+ + ..+|
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f 136 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 136 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence 34688999999999999999999876 689999998 777666653 6899999999765 1 1249
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
|+|+.-. ........+..+.+.|+ |||.+++-+...
T Consensus 137 D~ifiD~-----dk~~y~~~~~~~~~lL~-~GGvii~Dn~l~ 172 (219)
T d2avda1 137 DVAVVDA-----DKENCSAYYERCLQLLR-PGGILAVLRVLW 172 (219)
T ss_dssp EEEEECS-----CSTTHHHHHHHHHHHEE-EEEEEEEECCSG
T ss_pred cEEEEeC-----CHHHHHHHHHHHHHHhc-CCcEEEEeCCcc
Confidence 9999742 23345677889999999 999887744443
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.35 E-value=8e-08 Score=79.50 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=71.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCCC---------CCcc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDAI---------PKAD 246 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~~---------p~~D 246 (350)
.++.+|||||||+|..+..+++..+ +.+++.+|. ++..+.++. .++|+++.||..+-. ..||
T Consensus 55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 134 (214)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence 3468999999999999999999864 689999998 888777754 578999999987621 2489
Q ss_pred EEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 247 AVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 247 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
+|++-. +.........+.+..+.|+ |||.|+ +|.+.
T Consensus 135 ~ifiD~---~~~~~~~~~~l~~~~~lLk-pGGvIv-~Ddvl 170 (214)
T d2cl5a1 135 MVFLDH---WKDRYLPDTLLLEKCGLLR-KGTVLL-ADNVI 170 (214)
T ss_dssp EEEECS---CGGGHHHHHHHHHHTTCEE-EEEEEE-ESCCC
T ss_pred eeeecc---cccccccHHHHHHHhCccC-CCcEEE-EeCcC
Confidence 988742 1112222334677888999 998654 45443
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.32 E-value=5.6e-07 Score=73.53 Aligned_cols=66 Identities=20% Similarity=0.098 Sum_probs=53.0
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCCCCCccEEEecc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDAIPKADAVFMKW 252 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~~p~~D~i~~~~ 252 (350)
.+.+|||+|||+|.+++.++.+.+ .+++++|+ +.+++.+++ ..++++..+|..+....||+|++.-
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nP 117 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNP 117 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECC
T ss_pred CCCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcC
Confidence 468999999999999998877543 58999999 887776654 5678899999877544699999853
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.24 E-value=3.9e-07 Score=72.49 Aligned_cols=92 Identities=14% Similarity=0.109 Sum_probs=60.8
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-----CCCCccEEEe
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-----AIPKADAVFM 250 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-----~~p~~D~i~~ 250 (350)
...+.+|||+|||+|.+++..+.+. .+++.+|. +.+++.+++ .+++.....|.+. ....||+|++
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~g--a~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~ 116 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhcc--chhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence 4567899999999999999888864 57888998 888887664 4556555555432 1235999988
Q ss_pred cchhccCChHHHHHHHHHH--HhhCCCCCceEEE
Q 018775 251 KWILHDWDDEACVKILKNC--RQAIPDKSGKLVL 282 (350)
Q Consensus 251 ~~vlh~~~~~~~~~~L~~~--~~~L~~pgG~lli 282 (350)
.-= ++.+.. +.+.++ ...|+ |||.+++
T Consensus 117 DPP-Y~~~~~---~~l~~l~~~~ll~-~~g~ivi 145 (171)
T d1ws6a1 117 APP-YAMDLA---ALFGELLASGLVE-AGGLYVL 145 (171)
T ss_dssp CCC-TTSCTT---HHHHHHHHHTCEE-EEEEEEE
T ss_pred ccc-cccCHH---HHHHHHHHcCCcC-CCeEEEE
Confidence 421 112222 223333 35689 9987664
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.24 E-value=2.8e-07 Score=79.48 Aligned_cols=98 Identities=17% Similarity=0.192 Sum_probs=74.5
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC---CCC-CccEEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD---AIP-KADAVF 249 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~~p-~~D~i~ 249 (350)
+.+.+||-||+|.|..+..+++..|..+++.+|+ |.+++.+++ .+|++++.+|..+ ..+ .||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 5678999999999999999998777788999999 898887764 5799999999887 222 499999
Q ss_pred ecchhccCChH---HHHHHHHHHHhhCCCCCceEEEE
Q 018775 250 MKWILHDWDDE---ACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 250 ~~~vlh~~~~~---~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
+-..-..-... -..++++.+++.|+ |||.+++.
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~-~~Gi~v~q 203 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALK-EDGVFSAE 203 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEE-EEEEEEEE
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcC-CCcEEEEe
Confidence 74221110111 02578999999999 99988753
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.23 E-value=1e-06 Score=74.06 Aligned_cols=90 Identities=11% Similarity=0.247 Sum_probs=70.2
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCCC-c
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIPK-A 245 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p~-~ 245 (350)
...+++.++ ..+..+|||||||+|.++..|++.. .+++++|. +.+++.+++ ..+++++.+|+.+ +.+. .
T Consensus 18 i~kIv~~~~--~~~~d~VLEIGpG~G~LT~~L~~~~--~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~ 93 (245)
T d1yuba_ 18 LNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQ 93 (245)
T ss_dssp HHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSS
T ss_pred HHHHHHhcC--CCCCCeEEEECCCccHHHHHHHhhc--CceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccce
Confidence 456777777 7788999999999999999999984 47888888 777777765 4689999999999 7764 4
Q ss_pred cEEEecchhccCChHHHHHHH
Q 018775 246 DAVFMKWILHDWDDEACVKIL 266 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L 266 (350)
+..+.++.-++++.+-...++
T Consensus 94 ~~~vv~NLPY~Ist~il~~~l 114 (245)
T d1yuba_ 94 RYKIVGNIPYHLSTQIIKKVV 114 (245)
T ss_dssp EEEEEEECCSSSCHHHHHHHH
T ss_pred eeeEeeeeehhhhHHHHHHHh
Confidence 556668888888875443333
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.22 E-value=5.7e-07 Score=77.16 Aligned_cols=97 Identities=16% Similarity=0.196 Sum_probs=73.0
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------------CCCeEEEeccCCC---CCC
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------------CEGIFHVGGDMFD---AIP 243 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------~~~i~~~~~d~~~---~~p 243 (350)
.+++.+||-||+|.|..+..+++ ++..+++.+|+ |.+++.+++ .+|++++.+|..+ .-.
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~ 148 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR 148 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred CCCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence 35678999999999999999886 56678999999 888887642 4789999999876 224
Q ss_pred CccEEEecchhccCChHH---HHHHHHHHHhhCCCCCceEEEE
Q 018775 244 KADAVFMKWILHDWDDEA---CVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~---~~~~L~~~~~~L~~pgG~lli~ 283 (350)
.||+|++-.. ...+... ..++++.+++.|+ |||.+++.
T Consensus 149 ~yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~-~~Gv~v~q 189 (276)
T d1mjfa_ 149 GFDVIIADST-DPVGPAKVLFSEEFYRYVYDALN-NPGIYVTQ 189 (276)
T ss_dssp CEEEEEEECC-CCC-----TTSHHHHHHHHHHEE-EEEEEEEE
T ss_pred CCCEEEEeCC-CCCCCcccccCHHHHHhhHhhcC-CCceEEEe
Confidence 5999987332 2222111 2578999999999 99988753
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.22 E-value=4.4e-07 Score=79.61 Aligned_cols=97 Identities=13% Similarity=0.045 Sum_probs=71.3
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCC-------CCCccEEEe
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDA-------IPKADAVFM 250 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~-------~p~~D~i~~ 250 (350)
..+.+|||++||+|.++..+++. ..+++.+|. +.+++.+++ -++++++.+|.++. -..||+|++
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 35789999999999999998864 457899999 888887764 35799999998761 124999998
Q ss_pred cchhccCC-------hHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 251 KWILHDWD-------DEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 251 ~~vlh~~~-------~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
.---..-+ ...-..+++.+.++|+ |||.|+...
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLk-pGG~Lv~~s 261 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLK-EGGILATAS 261 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEe
Confidence 32110001 1123468899999999 999988643
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.21 E-value=7.9e-07 Score=73.82 Aligned_cols=96 Identities=15% Similarity=0.104 Sum_probs=75.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC--C--------CCCc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD--A--------IPKA 245 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~--~--------~p~~ 245 (350)
.+..+|||||+++|.-+..+++..| +.+++.+|. ++..+.|++ .++|+++.+|..+ + ...|
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 4588999999999999999999886 678999998 776666653 6789999999876 2 1249
Q ss_pred cEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 246 DAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 246 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
|+|+.-. ........++.+.+.|+ |||.+++=+..
T Consensus 138 D~iFiDa-----~k~~y~~~~e~~~~ll~-~gGiii~DNvl 172 (227)
T d1susa1 138 DFIFVDA-----DKDNYLNYHKRLIDLVK-VGGVIGYDNTL 172 (227)
T ss_dssp SEEEECS-----CSTTHHHHHHHHHHHBC-TTCCEEEETTT
T ss_pred eEEEecc-----chhhhHHHHHHHHhhcC-CCcEEEEccCC
Confidence 9999832 22335678999999999 99988764433
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.19 E-value=5.2e-07 Score=78.95 Aligned_cols=99 Identities=11% Similarity=0.112 Sum_probs=70.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--------CCCeEEEeccCCCC------CC-CccE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--------CEGIFHVGGDMFDA------IP-KADA 247 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~~------~p-~~D~ 247 (350)
..++.+|||+.||+|.+++..+... ..+++.+|. +..++.+++ ..+++++.+|.++- .. .||+
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~ 220 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 220 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence 3468899999999999998877643 346888998 777776553 46899999999762 12 4999
Q ss_pred EEec---chhc--c-CC-hHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 248 VFMK---WILH--D-WD-DEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 248 i~~~---~vlh--~-~~-~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
|++- +.-+ . +. ..+-.++++.+.++|+ |||.|++..
T Consensus 221 Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~-pgG~l~~~s 263 (317)
T d2b78a2 221 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILS-ENGLIIAST 263 (317)
T ss_dssp EEECCCCC-----CCCCHHHHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred EEEcChhhccchhHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEe
Confidence 9982 1000 0 01 1234578999999999 999988633
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.18 E-value=7.9e-07 Score=76.05 Aligned_cols=98 Identities=18% Similarity=0.153 Sum_probs=74.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC---CCC-CccEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD---AIP-KADAV 248 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~~p-~~D~i 248 (350)
.+.+.+||-||+|.|..+..+++..+..+++.+|+ |++++.+++ ..|++++.+|... ..+ .||+|
T Consensus 73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI 152 (274)
T d1iy9a_ 73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (274)
T ss_dssp SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence 35678999999999999999998777779999999 888887653 5799999999886 222 49999
Q ss_pred EecchhccCChH--HHHHHHHHHHhhCCCCCceEEE
Q 018775 249 FMKWILHDWDDE--ACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 249 ~~~~vlh~~~~~--~~~~~L~~~~~~L~~pgG~lli 282 (350)
+.-..=..-+.. -..++++.+++.|+ |||.++.
T Consensus 153 i~D~~~p~~~~~~L~t~eFy~~~~~~L~-~~Gv~v~ 187 (274)
T d1iy9a_ 153 MVDSTEPVGPAVNLFTKGFYAGIAKALK-EDGIFVA 187 (274)
T ss_dssp EESCSSCCSCCCCCSTTHHHHHHHHHEE-EEEEEEE
T ss_pred EEcCCCCCCcchhhccHHHHHHHHhhcC-CCceEEE
Confidence 974221110000 13478999999999 9998875
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=7.4e-07 Score=76.56 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=74.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC---CCC-CccEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD---AIP-KADAV 248 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~~p-~~D~i 248 (350)
.+.+.+||-||+|.|..+..+++..+..+++++|+ |.+++.+++ ..|++++.+|..+ ..+ .||+|
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 155 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence 35678999999999999999998777889999999 999887764 5899999999876 223 49999
Q ss_pred EecchhccCChHH---HHHHHHHHHhhCCCCCceEEEE
Q 018775 249 FMKWILHDWDDEA---CVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 249 ~~~~vlh~~~~~~---~~~~L~~~~~~L~~pgG~lli~ 283 (350)
++-. .+...... ..++++.+++.|+ |||.+++.
T Consensus 156 i~D~-~~p~~~~~~L~t~eF~~~~~~~L~-~~Gi~v~q 191 (285)
T d2o07a1 156 ITDS-SDPMGPAESLFKESYYQLMKTALK-EDGVLCCQ 191 (285)
T ss_dssp EEEC-C-----------CHHHHHHHHHEE-EEEEEEEE
T ss_pred EEcC-CCCCCcccccccHHHHHHHHHhcC-CCCeEEEe
Confidence 9842 21111111 2367999999999 99998764
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.16 E-value=9.6e-07 Score=76.42 Aligned_cols=99 Identities=14% Similarity=0.097 Sum_probs=72.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--------CCCeEEEeccCCCC-------CCCccE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--------CEGIFHVGGDMFDA-------IPKADA 247 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~~-------~p~~D~ 247 (350)
...+.+|||+.||+|.++..+++. +.+++.+|. +.+++.|++ ..+++++++|+++- -..||+
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~ 207 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI 207 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence 446789999999999999998876 458999999 888887764 34799999999862 124999
Q ss_pred EEec---chhc----cCC-hHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 248 VFMK---WILH----DWD-DEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 248 i~~~---~vlh----~~~-~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
|++- +.-. .+. ......+++.+.++|+ |||.+++...
T Consensus 208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~-~~g~~ll~t~ 252 (309)
T d2igta1 208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILS-PKALGLVLTA 252 (309)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBC-TTCCEEEEEE
T ss_pred EEECCCcccccccchhHHHHHHHHHHHHHHHHhcC-CCCCEEEEec
Confidence 9982 1110 011 1234567788899999 9998776553
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.16 E-value=1.9e-06 Score=71.97 Aligned_cols=84 Identities=12% Similarity=0.249 Sum_probs=63.9
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCCC-c
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIPK-A 245 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p~-~ 245 (350)
...+++..+ ..++.+|||||||+|.++..|++.. .+++++++ +..++.+++ .++++++.+|+.+ +.+. .
T Consensus 10 ~~~iv~~~~--~~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~ 85 (235)
T d1qama_ 10 IDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ 85 (235)
T ss_dssp HHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred HHHHHHhcC--CCCCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccc
Confidence 456677776 7789999999999999999999974 46777877 666665543 6789999999999 6664 3
Q ss_pred cEEEecchhccCChH
Q 018775 246 DAVFMKWILHDWDDE 260 (350)
Q Consensus 246 D~i~~~~vlh~~~~~ 260 (350)
...+.++.-++.+.+
T Consensus 86 ~~~vv~NLPYnIss~ 100 (235)
T d1qama_ 86 SYKIFGNIPYNISTD 100 (235)
T ss_dssp CCEEEEECCGGGHHH
T ss_pred cceeeeeehhhhhHH
Confidence 445567777765543
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.14 E-value=1.8e-06 Score=70.47 Aligned_cols=92 Identities=17% Similarity=0.147 Sum_probs=70.9
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCC--CCCccEEEecchhcc
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDA--IPKADAVFMKWILHD 256 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~--~p~~D~i~~~~vlh~ 256 (350)
+..+|+|||+|.|.-++-++-.+|+.+++.+|. ..-+...+. -.++++++...++. ...||+|++..+-.
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~~- 143 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFAS- 143 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSSS-
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhcC-
Confidence 356999999999999999999999999999996 433222221 46799999988883 33599998876532
Q ss_pred CChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 257 WDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 257 ~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
...+++-+...++ ++|++++.-
T Consensus 144 -----~~~ll~~~~~~l~-~~g~~~~~K 165 (207)
T d1jsxa_ 144 -----LNDMVSWCHHLPG-EQGRFYALK 165 (207)
T ss_dssp -----HHHHHHHHTTSEE-EEEEEEEEE
T ss_pred -----HHHHHHHHHHhcC-CCcEEEEEC
Confidence 3467888888999 999988643
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.14 E-value=1.1e-06 Score=75.96 Aligned_cols=99 Identities=20% Similarity=0.170 Sum_probs=72.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC---C-CCCccEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD---A-IPKADAV 248 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~-~p~~D~i 248 (350)
.+.+.+||-||+|.|.++..+++..|..+++.+|+ +.+++.+++ .+|++++.+|..+ . ...||+|
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI 183 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 183 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence 35678999999999999999998766678999999 888886653 5899999999887 2 2349999
Q ss_pred EecchhccCChH--HHHHHHHHHHhhCCCCCceEEEE
Q 018775 249 FMKWILHDWDDE--ACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 249 ~~~~vlh~~~~~--~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
++-..--.-+.. -..++++.+++.|+ |||.++..
T Consensus 184 I~D~~dp~~~~~~L~t~eFy~~~~~~L~-~~Gi~v~q 219 (312)
T d2b2ca1 184 ITDSSDPVGPAESLFGQSYYELLRDALK-EDGILSSQ 219 (312)
T ss_dssp EECCC-------------HHHHHHHHEE-EEEEEEEE
T ss_pred EEcCCCCCCcchhhhhHHHHHHHHhhcC-CCcEEEEe
Confidence 973221110111 13578999999999 99998863
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.09 E-value=1.3e-06 Score=70.10 Aligned_cols=92 Identities=11% Similarity=0.062 Sum_probs=65.8
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC--CC--CCccEEEecchh
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD--AI--PKADAVFMKWIL 254 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~--~~--p~~D~i~~~~vl 254 (350)
.+.+|||++||+|.++++.+.+... +++.+|. +.+++.+++ ..+++++.+|.++ .. ..||+|++--=.
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred chhhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence 3679999999999999998887654 7888998 777775553 5678899999886 22 249999984211
Q ss_pred ccCChHHHHHHHHHHHh--hCCCCCceEEE
Q 018775 255 HDWDDEACVKILKNCRQ--AIPDKSGKLVL 282 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~--~L~~pgG~lli 282 (350)
.......++..+.+ .|+ |+|.+++
T Consensus 122 ---~~~~~~~~l~~l~~~~~L~-~~~iIii 147 (183)
T d2fpoa1 122 ---RRGLLEETINLLEDNGWLA-DEALIYV 147 (183)
T ss_dssp ---STTTHHHHHHHHHHTTCEE-EEEEEEE
T ss_pred ---ccchHHHHHHHHHHCCCCC-CCeEEEE
Confidence 12233455666654 588 8876665
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.05 E-value=1.3e-06 Score=75.28 Aligned_cols=97 Identities=18% Similarity=0.167 Sum_probs=75.2
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----------CCCeEEEeccCCC---CCC--CccEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----------CEGIFHVGGDMFD---AIP--KADAV 248 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~i~~~~~d~~~---~~p--~~D~i 248 (350)
+...+||=||+|.|..+..+++..|..+++.+|+ +.+++.+++ .+|++++.+|..+ ..+ .||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 5678999999999999999998777678999999 888887764 6899999999775 222 49999
Q ss_pred EecchhccCChH---HHHHHHHHHHhhCCCCCceEEEE
Q 018775 249 FMKWILHDWDDE---ACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 249 ~~~~vlh~~~~~---~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
+.-.. ...... -..++++.+++.|+ |||.+++.
T Consensus 159 i~D~~-dp~~~~~~L~t~eF~~~~~~~L~-~~Gi~v~q 194 (290)
T d1xj5a_ 159 IVDSS-DPIGPAKELFEKPFFQSVARALR-PGGVVCTQ 194 (290)
T ss_dssp EECCC-CTTSGGGGGGSHHHHHHHHHHEE-EEEEEEEE
T ss_pred EEcCC-CCCCcchhhCCHHHHHHHHHhcC-CCcEEEEe
Confidence 97321 111111 13578999999999 99998864
|
| >d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator IclR, N-terminal domain domain: Transcriptional regulator IclR, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.02 E-value=2.3e-06 Score=57.82 Aligned_cols=57 Identities=12% Similarity=0.253 Sum_probs=49.2
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhc
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHIS 98 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s 98 (350)
+.|++.+...+.|+|+.|||+.+|+ +...+.|+|..|+..|++++++ +++|++++..
T Consensus 8 l~IL~~~a~~~~~~s~~eia~~~~~---~~st~~rll~tL~~~g~l~~~~------~g~y~lG~~l 64 (75)
T d1mkma1 8 FEILDFIVKNPGDVSVSEIAEKFNM---SVSNAYKYMVVLEEKGFVLRKK------DKRYVPGYKL 64 (75)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEECT------TSCEEECTHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC------CCCEeecHHH
Confidence 4567777765579999999999999 8899999999999999999986 5889988644
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.98 E-value=4.7e-06 Score=73.28 Aligned_cols=100 Identities=17% Similarity=0.170 Sum_probs=71.6
Q ss_pred CCCcceEEEecCCchHHHHHHHHH-----CCCCcEEEecc-hhHhhhCCC-----CCCeEEEeccCCCC--CCCccEEEe
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKS-----YPHIKGINFDL-PHVVATAPV-----CEGIFHVGGDMFDA--IPKADAVFM 250 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~-----~p~~~~~~~D~-~~~~~~a~~-----~~~i~~~~~d~~~~--~p~~D~i~~ 250 (350)
...+.+|||.+||+|.++..+.++ .++.+++++|+ +.+++.|+. .....+..+|.... ...||+|++
T Consensus 115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~ 194 (328)
T d2f8la1 115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS 194 (328)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccc
Confidence 456789999999999999988754 24557899998 777776653 56677888888773 335999999
Q ss_pred cchhcc-CChH---------------HHHHHHHHHHhhCCCCCceEEEEe
Q 018775 251 KWILHD-WDDE---------------ACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 251 ~~vlh~-~~~~---------------~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+-=... +.++ --..++.++.+.|+ |||++.++-
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk-~~G~~~~I~ 243 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTK-PGGYLFFLV 243 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcC-CCCceEEEe
Confidence 632211 1111 11247999999999 999987644
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.98 E-value=1.1e-05 Score=66.44 Aligned_cols=104 Identities=13% Similarity=0.056 Sum_probs=71.5
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCC-CcEEEecc-hhHhhhCCCCCCeEEEeccCCC-C-CCCccEEEe
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPH-IKGINFDL-PHVVATAPVCEGIFHVGGDMFD-A-IPKADAVFM 250 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~-~p~~D~i~~ 250 (350)
.+++.+. ...+.+|||.|||+|.++..+.++++. ..++++|+ +..+..+. +..++.+|++. + ...||+++.
T Consensus 10 ~m~~l~~--~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~---~~~~~~~~~~~~~~~~~fd~ii~ 84 (223)
T d2ih2a1 10 FMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP---WAEGILADFLLWEPGEAFDLILG 84 (223)
T ss_dssp HHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT---TEEEEESCGGGCCCSSCEEEEEE
T ss_pred HHHHhcC--CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc---cceeeeeehhccccccccceecc
Confidence 3444454 567789999999999999998877654 56899998 55544433 46778888887 3 234999988
Q ss_pred cchhccC---Ch------H------------------HHHHHHHHHHhhCCCCCceEEEEe
Q 018775 251 KWILHDW---DD------E------------------ACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 251 ~~vlh~~---~~------~------------------~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
+.-.... .. . -...++.++.+.|+ |||++.++-
T Consensus 85 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk-~~G~~~~I~ 144 (223)
T d2ih2a1 85 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLK-PGGVLVFVV 144 (223)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred cCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcc-cCCceEEEE
Confidence 6332110 00 0 12356788999999 999988753
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.94 E-value=2.2e-05 Score=65.14 Aligned_cols=133 Identities=18% Similarity=0.195 Sum_probs=90.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-----CC-CCccEEEe
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-----AI-PKADAVFM 250 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-----~~-p~~D~i~~ 250 (350)
+....+++|||+|.|.-++-++=.+|+.+++.+|. ..-+...+. -.++.+++..++. +. ..||+|++
T Consensus 68 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~s 147 (239)
T d1xdza_ 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (239)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred ccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEE
Confidence 34568999999999999999999999999999996 432222221 4678887776654 12 24999999
Q ss_pred cchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhhHhhhcCCcccCCHHHHHHHHHhcCC
Q 018775 251 KWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLVMFAHTTGGKERTEQEWMKLLEQGGF 330 (350)
Q Consensus 251 ~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~ll~~aGf 330 (350)
..+-. ...++.-+...++ +||++++.-.- ...-..++.++.+...|+
T Consensus 148 RAva~------l~~ll~~~~~~l~-~~g~~i~~KG~--------------------------~~~~El~~a~~~~~~~~~ 194 (239)
T d1xdza_ 148 RAVAR------LSVLSELCLPLVK-KNGLFVALKAA--------------------------SAEEELNAGKKAITTLGG 194 (239)
T ss_dssp ECCSC------HHHHHHHHGGGEE-EEEEEEEEECC---------------------------CHHHHHHHHHHHHHTTE
T ss_pred hhhhC------HHHHHHHHhhhcc-cCCEEEEECCC--------------------------ChHHHHHHHHHHHHHcCC
Confidence 76542 3568889999999 99998864310 000013555667788899
Q ss_pred ceeEEEEc--C---CceeEEEEee
Q 018775 331 HRCKIISM--P---ALYSIIEAYP 349 (350)
Q Consensus 331 ~~~~~~~~--~---~~~~vi~~~~ 349 (350)
+...+... | +...++..+|
T Consensus 195 ~~~~v~~~~lp~~~~~r~lv~i~K 218 (239)
T d1xdza_ 195 ELENIHSFKLPIEESDRNIMVIRK 218 (239)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEEE
T ss_pred EEEEEEEEeCCCCCCCEEEEEEEE
Confidence 88776543 3 2345666554
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.88 E-value=1.4e-05 Score=63.73 Aligned_cols=109 Identities=20% Similarity=0.308 Sum_probs=81.3
Q ss_pred hHHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--CCCeEEEeccCCC-C------
Q 018775 172 VMKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--CEGIFHVGGDMFD-A------ 241 (350)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~-~------ 241 (350)
+..++++.+. ..++..++|..+|.|+.+..++++ +.+++++|. |++++.++. ..++.++++++.+ .
T Consensus 6 ll~Evl~~l~--~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~ 81 (182)
T d1wg8a2 6 LYQEALDLLA--VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAAL 81 (182)
T ss_dssp THHHHHHHHT--CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHT
T ss_pred HHHHHHHhcC--CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHc
Confidence 3456677776 678899999999999999999997 568999999 888887764 6789999988876 2
Q ss_pred -CCCccEEEe-----cchhccCCh--HHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 242 -IPKADAVFM-----KWILHDWDD--EACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 242 -~p~~D~i~~-----~~vlh~~~~--~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
...+|.|++ +.-+.+-.+ ......|....+.|+ |||+++++..
T Consensus 82 ~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk-~gg~~~ii~f 132 (182)
T d1wg8a2 82 GVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLA-PGGRLVVIAF 132 (182)
T ss_dssp TCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEE-EEEEEEEEEC
T ss_pred CCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhC-CCCeEEEEec
Confidence 124777776 222222111 123457889999999 9999998764
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.85 E-value=8.8e-06 Score=65.06 Aligned_cols=97 Identities=18% Similarity=0.044 Sum_probs=68.9
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCCC-------CCCccEEE
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFDA-------IPKADAVF 249 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~~-------~p~~D~i~ 249 (350)
..+.+|||+.||+|.++...+.+... +++.+|. +.+++.+++ .++++++.+|+++- ...||+|+
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~srGa~-~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSRGMD-KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEEcccccccccceeeecchh-HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence 35789999999999999999987643 6888888 777776553 56899999998761 12499998
Q ss_pred ecchhccCChHHHHHHHHHHHh--hCCCCCceEEEEeeee
Q 018775 250 MKWILHDWDDEACVKILKNCRQ--AIPDKSGKLVLVEIVV 287 (350)
Q Consensus 250 ~~~vlh~~~~~~~~~~L~~~~~--~L~~pgG~lli~e~~~ 287 (350)
+--=. .......+|..+.+ .|+ |+|.++ +|...
T Consensus 119 lDPPY---~~~~~~~~l~~i~~~~~L~-~~giIi-~E~~~ 153 (182)
T d2fhpa1 119 LDPPY---AKQEIVSQLEKMLERQLLT-NEAVIV-CETDK 153 (182)
T ss_dssp ECCCG---GGCCHHHHHHHHHHTTCEE-EEEEEE-EEEET
T ss_pred echhh---hhhHHHHHHHHHHHCCCCC-CCEEEE-EEcCC
Confidence 83211 12234566777754 589 988655 56543
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.68 E-value=0.00011 Score=58.36 Aligned_cols=103 Identities=21% Similarity=0.251 Sum_probs=72.4
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecchhHhhhCCCCCCeEEEeccCCC-CC---------
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDLPHVVATAPVCEGIFHVGGDMFD-AI--------- 242 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~~~~~i~~~~~d~~~-~~--------- 242 (350)
.++.+.+. .++++.+||||||+.|.++..+.+. .+..+++++|+..+ .....+.++.+|+.+ ..
T Consensus 11 ~EI~~k~~-l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----~~i~~~~~~~~d~~~~~~~~~~~~~~~ 85 (180)
T d1ej0a_ 11 DEIQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----DPIVGVDFLQGDFRDELVMKALLERVG 85 (180)
T ss_dssp HHHHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----CCCTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred HHHHHHhC-ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----cccCCceEeecccccchhhhhhhhhcc
Confidence 34566666 4578899999999999999998875 45578899997332 235678899999987 21
Q ss_pred -CCccEEEecchhccCC----hH-----HHHHHHHHHHhhCCCCCceEEE
Q 018775 243 -PKADAVFMKWILHDWD----DE-----ACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 243 -p~~D~i~~~~vlh~~~----~~-----~~~~~L~~~~~~L~~pgG~lli 282 (350)
..+|+|++-....--. |+ -+...+.-+.+.|+ +||.+++
T Consensus 86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk-~gG~fV~ 134 (180)
T d1ej0a_ 86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLA-PGGSFVV 134 (180)
T ss_dssp TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEE
T ss_pred CcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccC-CCCcEEE
Confidence 2499998844332221 11 12355667788999 9999986
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.67 E-value=0.00015 Score=59.53 Aligned_cols=106 Identities=9% Similarity=-0.011 Sum_probs=66.0
Q ss_pred HHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecch-hHhh--hCCC---CCCeEEEeccCCCC-CC-Cc
Q 018775 174 KALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLP-HVVA--TAPV---CEGIFHVGGDMFDA-IP-KA 245 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~a~~---~~~i~~~~~d~~~~-~p-~~ 245 (350)
..+.+.+- +.+..+|+|+|||.|..+..++...+...+.++++- .-.+ .... .+-+++..++-... .+ ..
T Consensus 56 ~~~~~~~~--~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~ 133 (257)
T d2p41a1 56 RWFVERNL--VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERC 133 (257)
T ss_dssp HHHHHTTS--SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHhcC--ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcC
Confidence 34555554 677889999999999999999887655566665551 1100 0011 24456665544442 22 49
Q ss_pred cEEEecchhccCC----hHHHHHHHHHHHhhCCCCCceEEE
Q 018775 246 DAVFMKWILHDWD----DEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 246 D~i~~~~vlh~~~----~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
|+|+|--.-+.-+ ......+|.-+.+.|+ |||.+++
T Consensus 134 D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk-~gg~Fvv 173 (257)
T d2p41a1 134 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLS-NNTQFCV 173 (257)
T ss_dssp SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCC-TTCEEEE
T ss_pred CEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcc-cCCEEEE
Confidence 9999853322110 1234477788889999 9998766
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=0.00014 Score=61.63 Aligned_cols=91 Identities=15% Similarity=0.252 Sum_probs=63.8
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEEeccCCC-CCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHVGGDMFD-AIP 243 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~~~d~~~-~~p 243 (350)
...+++... ..++..|||||+|.|.++..|+++.+ +++.++. +..++..++ ..+++++.+|+.+ +.|
T Consensus 10 ~~kIv~~~~--~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~ 85 (278)
T d1zq9a1 10 INSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP 85 (278)
T ss_dssp HHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred HHHHHHHhC--CCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh
Confidence 455666666 67788999999999999999999865 5666666 555554432 3689999999999 676
Q ss_pred CccEEEecchhccCChHHHHHHHHHHHhh
Q 018775 244 KADAVFMKWILHDWDDEACVKILKNCRQA 272 (350)
Q Consensus 244 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~ 272 (350)
.++.++ ++.-++. ...++.++...
T Consensus 86 ~~~~vV-~NLPY~I----ss~il~~~~~~ 109 (278)
T d1zq9a1 86 FFDTCV-ANLPYQI----SSPFVFKLLLH 109 (278)
T ss_dssp CCSEEE-EECCGGG----HHHHHHHHHHC
T ss_pred hhhhhh-cchHHHH----HHHHHHHHHhh
Confidence 665555 3444443 33456655543
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.50 E-value=0.00022 Score=58.79 Aligned_cols=94 Identities=15% Similarity=0.168 Sum_probs=63.4
Q ss_pred cceEEEecCCchHHHHHHHH----HCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCCC--C---C--CccEEEecch
Q 018775 187 IQSLADVGGGTGGALAEIVK----SYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFDA--I---P--KADAVFMKWI 253 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~----~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~--~---p--~~D~i~~~~v 253 (350)
+.+|||||++.|.-+..++. ..++.+++++|+ +........ ..+|+++.+|..++ . . .+|.|+.-.
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~- 159 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN- 159 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES-
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcC-
Confidence 67999999999977665543 246789999998 544443322 68999999998762 1 1 377776633
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
-|. .+....-+ +....|+ |||.++|-|.
T Consensus 160 ~H~--~~~v~~~~-~~~~lLk-~GG~iIveD~ 187 (232)
T d2bm8a1 160 AHA--NTFNIMKW-AVDHLLE-EGDYFIIEDM 187 (232)
T ss_dssp SCS--SHHHHHHH-HHHHTCC-TTCEEEECSC
T ss_pred Ccc--hHHHHHHH-HHhcccC-cCCEEEEEcC
Confidence 254 22222334 4668999 9999887654
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=6.3e-05 Score=63.00 Aligned_cols=83 Identities=10% Similarity=0.080 Sum_probs=60.6
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC----CCCeEEEeccCCC-CCCC--
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV----CEGIFHVGGDMFD-AIPK-- 244 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~i~~~~~d~~~-~~p~-- 244 (350)
.+.+++... ..++..|||||||.|.++..|++... +++.+++ +..++..++ .++++++.+|+.+ +.+.
T Consensus 10 ~~~Iv~~~~--~~~~d~vlEIGpG~G~LT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~~~~ 85 (252)
T d1qyra_ 10 IDSIVSAIN--PQKGQAMVEIGPGLAALTEPVGERLD--QLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELA 85 (252)
T ss_dssp HHHHHHHHC--CCTTCCEEEECCTTTTTHHHHHTTCS--CEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHH
T ss_pred HHHHHHhcC--CCCCCEEEEECCCchHHHHHHHccCC--ceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcccccc
Confidence 455666666 67789999999999999999998754 6777777 766665543 5789999999998 5432
Q ss_pred ----ccEEEecchhccCCh
Q 018775 245 ----ADAVFMKWILHDWDD 259 (350)
Q Consensus 245 ----~D~i~~~~vlh~~~~ 259 (350)
--+.+..+.-++.+-
T Consensus 86 ~~~~~~~~vvgNlPY~Iss 104 (252)
T d1qyra_ 86 EKMGQPLRVFGNLPYNIST 104 (252)
T ss_dssp HHHTSCEEEEEECCTTTHH
T ss_pred cccCCCeEEEecchHHHHH
Confidence 124566677766554
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.11 E-value=0.00099 Score=58.59 Aligned_cols=97 Identities=8% Similarity=0.106 Sum_probs=66.8
Q ss_pred HHHHhcccCCCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCCCC-----
Q 018775 175 ALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFDAI----- 242 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~~~----- 242 (350)
.+.+.+. ..+..+|||+-||+|.++..|++.. .+++++|. ++.++.|+. ..+++|+.+|..+..
T Consensus 203 ~v~~~~~--~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~ 278 (358)
T d1uwva2 203 RALEWLD--VQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 278 (358)
T ss_dssp HHHHHHT--CCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHhhc--cCCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhh
Confidence 3344444 5678899999999999999999864 47888998 888887764 578999999988732
Q ss_pred --CCccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 243 --PKADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 243 --p~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
..+|+|++ +=|..=+.++++.+.+. + |.-.++|
T Consensus 279 ~~~~~d~vil-----DPPR~G~~~~~~~l~~~-~-~~~ivYV 313 (358)
T d1uwva2 279 AKNGFDKVLL-----DPARAGAAGVMQQIIKL-E-PIRIVYV 313 (358)
T ss_dssp GTTCCSEEEE-----CCCTTCCHHHHHHHHHH-C-CSEEEEE
T ss_pred hhccCceEEe-----CCCCccHHHHHHHHHHc-C-CCEEEEE
Confidence 23899987 22222233456666554 5 5544433
|
| >d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Biotin repressor, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.00035 Score=44.82 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=44.1
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecC
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMT 95 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t 95 (350)
++.++..|.+. +.+|.+|||+.+|+ +...+++-++.|...|+..+... +.+|+++
T Consensus 7 ~~~iL~~L~~~-~~~s~~eLa~~l~v---S~~ti~r~i~~L~~~G~~I~~~~-----g~GY~L~ 61 (63)
T d1biaa1 7 PLKLIALLANG-EFHSGEQLGETLGM---SRAAINKHIQTLRDWGVDVFTVP-----GKGYSLP 61 (63)
T ss_dssp HHHHHHHHTTS-SCBCHHHHHHHHTS---CHHHHHHHHHHHHHTTCCCEEET-----TTEEECS
T ss_pred HHHHHHHHHHC-CcCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCcEEEeC-----CCeEEeC
Confidence 45677888764 68999999999999 89999999999999998443331 3578875
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=96.98 E-value=0.00036 Score=55.35 Aligned_cols=96 Identities=16% Similarity=0.075 Sum_probs=62.9
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--------CCCeEEEeccCCC----C--CCCccEEEe
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--------CEGIFHVGGDMFD----A--IPKADAVFM 250 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~i~~~~~d~~~----~--~p~~D~i~~ 250 (350)
.+.+|||+-||+|.++++.+.+... +++.+|. ..+++..++ .....+...|..+ . .+.||+|++
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~-~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl 121 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAK-KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred ccceEeecccCccceeeeeeeecce-eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence 3679999999999999999988654 7888887 666554332 3456777776543 1 224999988
Q ss_pred cchhccCChHHHHHHHHHHHh--hCCCCCceEEEEeeee
Q 018775 251 KWILHDWDDEACVKILKNCRQ--AIPDKSGKLVLVEIVV 287 (350)
Q Consensus 251 ~~vlh~~~~~~~~~~L~~~~~--~L~~pgG~lli~e~~~ 287 (350)
--= +. ......+|..+.+ .|+ ++|.++ +|...
T Consensus 122 DPP-Y~--~~~~~~~l~~l~~~~~L~-~~~lii-iE~~~ 155 (183)
T d2ifta1 122 DPP-FH--FNLAEQAISLLCENNWLK-PNALIY-VETEK 155 (183)
T ss_dssp CCC-SS--SCHHHHHHHHHHHTTCEE-EEEEEE-EEEES
T ss_pred chh-Hh--hhhHHHHHHHHHHhCCcC-CCcEEE-EEecC
Confidence 321 11 2234466776654 688 887655 45443
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.94 E-value=0.012 Score=50.61 Aligned_cols=147 Identities=10% Similarity=0.144 Sum_probs=101.0
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCC---------------------------CCCCeEEEecc
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAP---------------------------VCEGIFHVGGD 237 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~---------------------------~~~~i~~~~~d 237 (350)
.+...|+-+|||.=....++...+|+++++-+|.|++++.-+ ..++..++..|
T Consensus 95 ~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~D 174 (328)
T d1rjda_ 95 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 174 (328)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecC
Confidence 345689999999999999998889999999999988766211 04678889999
Q ss_pred CCC-CC----------CC-ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCCCCcccccchhhhhh
Q 018775 238 MFD-AI----------PK-ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDGNNIFGDMGLVFDLV 305 (350)
Q Consensus 238 ~~~-~~----------p~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~~~~~~~~~~~~~~~ 305 (350)
+.+ .. ++ .-++++..+|.+++.+++.++|+.+.+..+ ++.+++.|++.+..+.++ ++..+-.+
T Consensus 175 L~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~--~~~~i~YE~i~~~~p~D~---FG~~M~~n 249 (328)
T d1rjda_ 175 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS--HGLWISYDPIGGSQPNDR---FGAIMQSN 249 (328)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS--SEEEEEEEECCCCSTTCC---HHHHHHHH
T ss_pred CCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC--CceEEEeccCCCCCCCCh---HHHHHHHH
Confidence 887 21 11 448899999999999999999999998877 577888999876544332 23222222
Q ss_pred Hhh--h--cCC-cccCCHHHHHHHHHhcCCceeEEEEc
Q 018775 306 MFA--H--TTG-GKERTEQEWMKLLEQGGFHRCKIISM 338 (350)
Q Consensus 306 ~~~--~--~~~-~~~~s~~e~~~ll~~aGf~~~~~~~~ 338 (350)
+.. . ..+ ....|.+...+-+ .||..+....+
T Consensus 250 l~~~r~~~l~~~~~~~t~~~~~~r~--~~~~~~~~~dm 285 (328)
T d1rjda_ 250 LKESRNLEMPTLMTYNSKEKYASRW--SAAPNVIVNDM 285 (328)
T ss_dssp HHHHHCCCCTTTTTTCSHHHHHGGG--TTSSEEEEEEH
T ss_pred HHHhcCCCCCccccCCCHHHHHHHH--hcCCccchhhH
Confidence 211 0 010 1123566665555 37777666554
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.93 E-value=0.00038 Score=62.91 Aligned_cols=109 Identities=18% Similarity=0.182 Sum_probs=73.0
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHCC-------------CCcEEEecc-hhHhhhCCC--------CCC
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSYP-------------HIKGINFDL-PHVVATAPV--------CEG 230 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~-~~~~~~a~~--------~~~ 230 (350)
++.+++.++ .....+|+|-.||+|.++....+... .....++|. +.+...++- ...
T Consensus 151 v~~mv~ll~--~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~ 228 (425)
T d2okca1 151 IQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR 228 (425)
T ss_dssp HHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred hHhhheecc--CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcccc
Confidence 344455555 45678999999999999988776432 234778887 665554431 345
Q ss_pred eEEEeccCCCCCC--CccEEEecchhc--cCC-------------hHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 231 IFHVGGDMFDAIP--KADAVFMKWILH--DWD-------------DEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 231 i~~~~~d~~~~~p--~~D~i~~~~vlh--~~~-------------~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
..+..+|.+...+ .||+|+++-=.. .+. ...-..++.++.+.|+ |||++.++-
T Consensus 229 ~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk-~~G~~~iI~ 298 (425)
T d2okca1 229 SPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLK-TGGRAAVVL 298 (425)
T ss_dssp CSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred ceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcC-CCCeEEEEe
Confidence 6678888888333 499999853221 111 1112468999999999 999988753
|
| >d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Hypothetical protein PH1061 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.93 E-value=0.00015 Score=51.42 Aligned_cols=72 Identities=17% Similarity=0.195 Sum_probs=54.9
Q ss_pred HHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchh
Q 018775 25 MALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKW 100 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~ 100 (350)
.++..-.++.++..|... +++|+.|||+.+++ ....+.+.|+.|...|++++.....+...-.|++|+.+..
T Consensus 11 ~~l~~p~r~~IL~~L~~~-~~~~~~eLa~~l~i---s~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~G~~ 82 (100)
T d1ub9a_ 11 HILGNPVRLGIMIFLLPR-RKAPFSQIQKVLDL---TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGME 82 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH-SEEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHH
T ss_pred HhcCCHHHHHHHHHhccC-CCeeHHHHHHHHhh---ccccccHHHHHHhhhceeEEEEcCcCCccccccCCHHHHH
Confidence 445555678888888654 69999999999999 8999999999999999998764211111124889987753
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=96.92 E-value=0.0017 Score=55.32 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=73.2
Q ss_pred CCcceEEEecCCchHHHHHHHHHCCCCcEEEecchhHhhhCC---------CCCCeEEEeccCCCCCC------C-----
Q 018775 185 DSIQSLADVGGGTGGALAEIVKSYPHIKGINFDLPHVVATAP---------VCEGIFHVGGDMFDAIP------K----- 244 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~---------~~~~i~~~~~d~~~~~p------~----- 244 (350)
.+...|+.+|||-=.....+ ...++++++-+|.|++++.-+ ...+..++..|+.++.+ .
T Consensus 88 ~g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ 166 (297)
T d2uyoa1 88 DGIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 166 (297)
T ss_dssp TTCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred hCCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence 45567888999987777666 335788899999998876322 14567788888876321 1
Q ss_pred ccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEE
Q 018775 245 ADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 245 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
.-++++..++++++.+++.++|+.+.+... ||+.|++
T Consensus 167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~-~GS~l~~ 203 (297)
T d2uyoa1 167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSA-VGSRIAV 203 (297)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCC-TTCEEEE
T ss_pred CEEEEEccccccCCHHHHHHHHHHHHHhCC-CCCEEEE
Confidence 347788899999999999999999999999 9988664
|
| >d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Putative transcriptional regulator TM1602, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.91 E-value=0.00056 Score=44.15 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=45.8
Q ss_pred HHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCc-eeecccCCCCCCCeEecCh
Q 018775 29 SAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGI-FAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 29 ~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~-l~~~~~~~~~~~~~~~~t~ 96 (350)
.--...++..|.+..+++|.++||+.+++ +.+.++|-|+.|.+.|+ +.... +.|.+.+
T Consensus 6 ~eR~~~Il~~L~~~~~~vs~~~La~~l~V---S~~TI~rdi~~L~~~G~~I~~~~-------gGY~L~~ 64 (65)
T d1j5ya1 6 QERLKSIVRILERSKEPVSGAQLAEELSV---SRQVIVQDIAYLRSLGYNIVATP-------RGYVLAG 64 (65)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHTS---CHHHHHHHHHHHHHHTCCCEEET-------TEEECCT
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHCC---CHHHHHHHHHHHHHCCCeEEEeC-------CCEEeCC
Confidence 33445677777654368999999999999 89999999999999998 55553 6888753
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=96.80 E-value=0.041 Score=47.58 Aligned_cols=149 Identities=18% Similarity=0.204 Sum_probs=90.8
Q ss_pred CCcceEEEecCCchHHHH-------HHHH-H--------CCCCcEEEecchh-----HhhhCCC----CC--CeEEEecc
Q 018775 185 DSIQSLADVGGGTGGALA-------EIVK-S--------YPHIKGINFDLPH-----VVATAPV----CE--GIFHVGGD 237 (350)
Q Consensus 185 ~~~~~vLDvG~G~G~~~~-------~l~~-~--------~p~~~~~~~D~~~-----~~~~a~~----~~--~i~~~~~d 237 (350)
++..+|.|+||.+|..+. ...+ + -|..++..-|+|. ....... .. -+.-++|.
T Consensus 50 ~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGS 129 (359)
T d1m6ex_ 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCc
Confidence 455789999999998863 2221 1 2556677778752 2222221 11 24457789
Q ss_pred CCC-CCCC--ccEEEecchhccCCh-------------------------------HHHHHHHHHHHhhCCCCCceEEEE
Q 018775 238 MFD-AIPK--ADAVFMKWILHDWDD-------------------------------EACVKILKNCRQAIPDKSGKLVLV 283 (350)
Q Consensus 238 ~~~-~~p~--~D~i~~~~vlh~~~~-------------------------------~~~~~~L~~~~~~L~~pgG~lli~ 283 (350)
|.. -+|+ .+++++++.||-++. .|...+|+.=++=|. |||++++.
T Consensus 130 FY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv-~GG~mvl~ 208 (359)
T d1m6ex_ 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVV-PGGRMVLT 208 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBC-TTCEEEEE
T ss_pred hhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcEEEEE
Confidence 998 5664 899999999997641 133457776677789 99999998
Q ss_pred eeeecCCCCCcccccch--------hhhhhHhhhcCC---------cccCCHHHHHHHHHhcC-CceeEE
Q 018775 284 EIVVQEDGNNIFGDMGL--------VFDLVMFAHTTG---------GKERTEQEWMKLLEQGG-FHRCKI 335 (350)
Q Consensus 284 e~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~---------~~~~s~~e~~~ll~~aG-f~~~~~ 335 (350)
-..+++...... .... +.++...+.... -..+|.+|+++.+++.| |.+.++
T Consensus 209 ~~gr~~~~~~~~-~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~ 277 (359)
T d1m6ex_ 209 ILGRRSEDRAST-ECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EEECSSSSSSST-TTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred EeccCCCCCCCC-ccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeee
Confidence 887766543211 1111 222222111110 12358999999998876 554443
|
| >d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: SmtB repressor species: Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]
Probab=96.41 E-value=0.00096 Score=46.87 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=47.1
Q ss_pred HHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 24 SMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 24 ~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+++|.--.++.++..|.. ++.++.|||+.+|+ +...+.+.|+.|...|+|....
T Consensus 17 ~kaL~~p~Rl~Il~~L~~--~~~~v~ela~~l~i---s~stvS~HL~~L~~aglV~~~r 70 (98)
T d1r1ta_ 17 FAVLADPNRLRLLSLLAR--SELCVGDLAQAIGV---SESAVSHQLRSLRNLRLVSYRK 70 (98)
T ss_dssp HHHHCCHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhCCHHHHHHHHHHHc--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCceEEEE
Confidence 355666677888888876 79999999999999 8899999999999999998876
|
| >d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Metal-sensing transcriptional repressor CzrA species: Staphylococcus aureus [TaxId: 1280]
Probab=96.39 E-value=0.00083 Score=46.80 Aligned_cols=54 Identities=9% Similarity=0.234 Sum_probs=47.5
Q ss_pred HHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 24 SMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 24 ~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+++|.--.++.++..|.. ++.++.||++.+|+ +...+.+-|+.|...|+|....
T Consensus 12 fkaL~d~~Rl~Il~~L~~--~~~~v~el~~~l~~---s~~~vS~HL~~L~~~glv~~~r 65 (94)
T d1r1ua_ 12 FKALGDYNRIRIMELLSV--SEASVGHISHQLNL---SQSNVSHQLKLLKSVHLVKAKR 65 (94)
T ss_dssp HHHTCSHHHHHHHHHHHH--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhCCHHHHHHHHHHHc--CCccHHHHHHHHCC---CHHHHHHHHHHHHHCCceEEEE
Confidence 455666677888888887 79999999999999 8899999999999999998876
|
| >d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein ywnA species: Bacillus subtilis [TaxId: 1423]
Probab=96.24 E-value=0.0028 Score=46.76 Aligned_cols=51 Identities=8% Similarity=0.201 Sum_probs=40.6
Q ss_pred hhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 37 DIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 37 d~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
-.|+.+ +++|.++||+.+++ ++..++++|+.|...|||.-..+ .+|.| ++.
T Consensus 11 ~~la~~-~~~ss~~IA~~~~~---~~~~v~kIl~~L~~aglV~s~rG----~~GGy-Lar 61 (127)
T d1xd7a_ 11 SLISMD-EKTSSEIIADSVNT---NPVVVRRMISLLKKADILTSRAG----VPGAS-LKK 61 (127)
T ss_dssp HHHHTC-SCCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEECCSS----SSSCE-ESS
T ss_pred HHHhcC-CCCCHHHHHHHhCc---CHHHHHHHHHHHHHhCcccccCC----CCCcc-ccC
Confidence 334433 68999999999999 88999999999999999997763 23556 554
|
| >d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: C-terminal fragment of elongation factor SelB domain: C-terminal fragment of elongation factor SelB species: Moorella thermoacetica [TaxId: 1525]
Probab=96.15 E-value=0.0032 Score=40.23 Aligned_cols=42 Identities=24% Similarity=0.447 Sum_probs=38.2
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEec
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKM 94 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~ 94 (350)
.|-++.|||+.+|+ ++..++.+|+.|+..|.+.+.. ++.|.+
T Consensus 22 ~PP~vrdl~~~l~~---~e~~~~~lL~~l~~~G~lvkI~------~d~yfh 63 (64)
T d1lvaa3 22 QPPSFKEVAGSFNL---DPSELEELLHYLVREGVLVKIN------DEFYWH 63 (64)
T ss_dssp SCCBHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEESS------SSBEEE
T ss_pred CCCcHHHHHHHhCC---CHHHHHHHHHHHHHCCCEEEec------cccccc
Confidence 69999999999999 9999999999999999999997 466653
|
| >d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: Transcriptional regulator VC2007 N-terminal domain species: Vibrio cholerae [TaxId: 666]
Probab=96.14 E-value=0.002 Score=42.26 Aligned_cols=46 Identities=13% Similarity=0.242 Sum_probs=40.3
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
..|+..|... +++|..|||+.+|+ +...+.+.++.|...|++.+.+
T Consensus 9 ~~Il~~l~~~-g~~sr~eLa~~~gl---S~~Tv~~~l~~L~~~Glv~e~~ 54 (71)
T d1z05a1 9 GRVYKLIDQK-GPISRIDLSKESEL---APASITKITRELIDAHLIHETT 54 (71)
T ss_dssp HHHHHHHHHH-CSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEec
Confidence 3567777665 79999999999999 8999999999999999998764
|
| >d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Putative transcriptional regulator YusO species: Bacillus subtilis [TaxId: 1423]
Probab=96.05 E-value=0.0094 Score=44.59 Aligned_cols=67 Identities=12% Similarity=0.193 Sum_probs=49.8
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.++..|... +|.|+.+||+.+++ ++..+.+.++.|+..||+++.....+.-.-.+.+|+.+..+.
T Consensus 37 q~~iL~~l~~~-~~~t~~~la~~~~i---~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~v~lT~~G~~~~ 103 (143)
T d1s3ja_ 37 QLFVLASLKKH-GSLKVSEIAERMEV---KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF 103 (143)
T ss_dssp HHHHHHHHHHH-SEEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHhhhheeeeecCCCCceEEEECHHHHHHH
Confidence 34466777665 68999999999999 899999999999999999987632110011377787776444
|
| >d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Cadmium efflux system accessory protein CadC species: Staphylococcus aureus [TaxId: 1280]
Probab=96.04 E-value=0.0019 Score=46.14 Aligned_cols=56 Identities=11% Similarity=0.204 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 23 DSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 23 ~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+++|.--.++.++..|... ++.++.|||+.+|+ +...+.+.|+.|...|+|....
T Consensus 24 ~~kaLadp~Rl~Il~~L~~~-~~~~v~ela~~l~~---s~s~vS~HL~~L~~aGlv~~~r 79 (108)
T d1u2wa1 24 ILKAIADENRAKITYALCQD-EELCVCDIANILGV---TIANASHHLRTLYKQGVVNFRK 79 (108)
T ss_dssp HHHHHHSHHHHHHHHHHHHS-SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHHhCCHHHHHHHHHHHhC-CCccHHHHHHHHcc---ChhHHHHHHHHHHHCCeeEEEE
Confidence 45677778889999998653 79999999999999 8999999999999999999986
|
| >d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: N-acetylglucosamine kinase species: Thermotoga maritima [TaxId: 2336]
Probab=95.99 E-value=0.002 Score=40.98 Aligned_cols=44 Identities=18% Similarity=0.379 Sum_probs=40.1
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.|+..|.+ +|+|..|||+.+|+ +...+.++++.|...|++.+.+
T Consensus 3 ~Il~~i~~--~pisr~eLa~~~gl---s~~TVs~~v~~L~~~GlV~e~~ 46 (62)
T d2hoea1 3 RILKRIMK--SPVSRVELAEELGL---TKTTVGEIAKIFLEKGIVVEEK 46 (62)
T ss_dssp CSHHHHHH--SCBCHHHHHHHHTC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHH--CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEECC
Confidence 46778876 79999999999999 8899999999999999999876
|
| >d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: MexR repressor species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.93 E-value=0.012 Score=44.01 Aligned_cols=69 Identities=10% Similarity=0.191 Sum_probs=51.1
Q ss_pred HHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 29 SAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 29 ~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
+..++.++..|... +++|..+||+.+++ +...+.+.++.|+..|||.+.....+.-.-.+.+|+.+..+
T Consensus 35 t~~q~~vL~~l~~~-~~~t~~~la~~l~~---~~~~vsr~l~~L~~~G~v~r~~~~~D~R~~~l~lT~~G~~~ 103 (141)
T d1lnwa_ 35 TPPDVHVLKLIDEQ-RGLNLQDLGRQMCR---DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAI 103 (141)
T ss_dssp CHHHHHHHHHHHSS-TTCBHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEECSSSSSSEEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHC-CCCCHHHHHHHHCc---cHhHHHHHHHHHHHhhceeeeccCCCCcchhhccCHHHHHH
Confidence 34456677777664 57999999999999 89999999999999999998763221111236677666533
|
| >d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Ta1064 (RFK), N-terminal domain species: Thermoplasma acidophilum [TaxId: 2303]
Probab=95.90 E-value=0.0025 Score=43.31 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=42.0
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCC---eEecChhchhh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDET---LYKMTHISKWL 101 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~---~~~~t~~s~~l 101 (350)
+++|..+||+.+++ ++..+.++|+.|...|++.+.. ++ .+.+|+.+..+
T Consensus 20 ~~lt~~eLa~~l~i---~~~~vs~~l~~Le~~GlV~r~~------D~R~~~i~LT~~G~~~ 71 (85)
T d3ctaa1 20 AYLTSSKLADMLGI---SQQSASRIIIDLEKNGYITRTV------TKRGQILNITEKGLDV 71 (85)
T ss_dssp EECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEEE------ETTEEEEEECHHHHHH
T ss_pred CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCeeeec------ccccccceECHHHHHH
Confidence 69999999999999 8899999999999999999965 33 36778777643
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.87 E-value=0.0068 Score=51.93 Aligned_cols=103 Identities=12% Similarity=0.169 Sum_probs=69.2
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCC-CCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C--CCCccEEEe--
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYP-HIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A--IPKADAVFM-- 250 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~p~~D~i~~-- 250 (350)
..++.+|||+.+|.|.=+..++.... +..++..|. +.-++..+. ..++.+...|... + ...||.|++
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 56788999999999999999988754 456788887 555544332 4567777777665 2 234999887
Q ss_pred ----cchhc-------cCChHH-------HHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 251 ----KWILH-------DWDDEA-------CVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 251 ----~~vlh-------~~~~~~-------~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
..++. .+..++ -.++|+++.+.++ |||+|+-....+
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk-~gG~lVYsTCSl 247 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLK-PGGILVYSTCSL 247 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEESCC
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeC-CCcEEEEeeccC
Confidence 12221 122222 2368899999999 999877554433
|
| >d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Hypothetical protein PH1932 domain: Hypothetical protein PH1932 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.87 E-value=0.003 Score=50.06 Aligned_cols=71 Identities=14% Similarity=0.220 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccC-CCC-CCCeEecChhc
Q 018775 23 DSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSS-DGG-DETLYKMTHIS 98 (350)
Q Consensus 23 ~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-~~~-~~~~~~~t~~s 98 (350)
...+|..-.+..++..|.. +|.|+.|||+.+|+ ++..+.+.|+.|...|+|...... ..| +...|++|..+
T Consensus 12 ~~~~l~~p~R~~Il~~L~~--~~~s~~ela~~lg~---s~~~v~~hl~~L~~~glv~~~~~~~~~g~~~k~y~~~~~~ 84 (190)
T d1ulya_ 12 VIKVMLEDTRRKILKLLRN--KEMTISQLSEILGK---TPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGRTADV 84 (190)
T ss_dssp HHHHHHSHHHHHHHHHHTT--CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEESSSE
T ss_pred HHHHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEeeccCCcceEEEEEcccc
Confidence 4567777788899999975 79999999999999 889999999999999999754321 001 11247777654
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.84 E-value=0.011 Score=49.75 Aligned_cols=102 Identities=14% Similarity=0.204 Sum_probs=68.1
Q ss_pred CCCcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC-C--CC-CccEEEe--
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD-A--IP-KADAVFM-- 250 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~-~--~p-~~D~i~~-- 250 (350)
..++.+|||+.+|.|.=+..++....+.+++..|. +.-++..+. ...+.....|... . .+ .||.|++
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 56789999999999999999999888888889997 544433321 2334444444443 1 22 4999987
Q ss_pred ----cchh-------ccCChHH-------HHHHHHHHHhhCCCCCceEEEEeee
Q 018775 251 ----KWIL-------HDWDDEA-------CVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 251 ----~~vl-------h~~~~~~-------~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
..++ ..|...+ -.++|+++.+.|+ |||+|+-....
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk-~gG~lvYsTCS 232 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLK-TGGTLVYATCS 232 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEE-EEEEEEEEESC
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcC-CCceEEEeeec
Confidence 2323 2233222 2378999999999 99988754433
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.82 E-value=0.0098 Score=51.15 Aligned_cols=55 Identities=13% Similarity=0.012 Sum_probs=42.1
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCC---CCCCeEEEeccCCC
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAP---VCEGIFHVGGDMFD 240 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~~~~i~~~~~d~~~ 240 (350)
....|||||.|.|.++..|+++..--++++++. +...+..+ ..++++++.+|++.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 467899999999999999998743236788877 55544433 26789999999875
|
| >d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: Mlc protein N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.004 Score=40.55 Aligned_cols=45 Identities=4% Similarity=0.154 Sum_probs=39.9
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.|+..|... +++|..|||+.+|+ +...+.++++.|...|+|.+.+
T Consensus 9 ~Il~~i~~~-g~~sr~eLa~~~gL---S~~Tvs~iv~~L~~~glv~e~g 53 (70)
T d1z6ra1 9 AVYRLIDQL-GPVSRIDLSRLAQL---APASITKIVHEMLEAHLVQELE 53 (70)
T ss_dssp HHHHHHHSS-CSCCHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEC-
T ss_pred HHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCEEeeC
Confidence 467777765 79999999999999 8899999999999999998875
|
| >d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: PF1790-like domain: Transcriptional regulatory protein PF1790 species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.66 E-value=0.0039 Score=49.56 Aligned_cols=70 Identities=13% Similarity=0.229 Sum_probs=52.4
Q ss_pred HHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccC-CCC-CCCeEecChhch
Q 018775 25 MALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSS-DGG-DETLYKMTHISK 99 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~-~~~-~~~~~~~t~~s~ 99 (350)
++|.--.+..|+..|.. +|.|+.|||+.+|+ ++..+++.|+.|...|+|+..... ..| +...|+++..+.
T Consensus 10 ~~l~~~~R~~Il~~L~~--~~~~~~ela~~l~~---s~~~v~~HL~~L~~~Glv~~~~~~~~~G~~~~~y~l~~~~~ 81 (194)
T d2p4wa1 10 DVLGNETRRRILFLLTK--RPYFVSELSRELGV---GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR 81 (194)
T ss_dssp HHHHSHHHHHHHHHHHH--SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred HHhCCHHHHHHHHHHHh--CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEEEEeecCCCCceEEEEecccce
Confidence 34444456677777776 79999999999999 889999999999999999865321 111 223688887654
|
| >d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Probable transcriptional regulator PA3067 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.58 E-value=0.0073 Score=45.39 Aligned_cols=69 Identities=23% Similarity=0.299 Sum_probs=50.2
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|...+|++|+.+||+.+++ +...+.++++-|+..|+|.+.....+.-.-.+.+|+.+..+.
T Consensus 35 ~q~~vL~~L~~~~g~~t~~~La~~~~~---~~~~vs~~i~~L~~~glv~r~~~~~DrR~~~i~LT~~G~~~~ 103 (145)
T d2hr3a1 35 SQLVVLGAIDRLGGDVTPSELAAAERM---RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL 103 (145)
T ss_dssp HHHHHHHHHHHTTSCBCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCC---CHHHHHHHHHHHHHcCCeEeeeCccchhHHHhccCHHHHHHH
Confidence 455666667544468999999999999 899999999999999999987632111012477887776443
|
| >d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator MgrA species: Staphylococcus aureus [TaxId: 1280]
Probab=95.50 E-value=0.019 Score=42.40 Aligned_cols=67 Identities=13% Similarity=0.261 Sum_probs=50.9
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
.++.++..|... ++.|..+||+.+++ +...+.++++-|+..|++++.....+.-.-.+.+|+.+..+
T Consensus 35 ~q~~vL~~i~~~-~~~t~~~la~~l~~---~~~~~s~~l~~L~~~Gli~r~~~~~D~R~~~l~lT~~G~~~ 101 (136)
T d2bv6a1 35 PQFLVLTILWDE-SPVNVKKVVTELAL---DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETI 101 (136)
T ss_dssp HHHHHHHHHHHS-SEEEHHHHHHHTTC---CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHH
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHCC---CHhHHHHHHHHHHHCCCEEEeecCCcccchhhccCHHHHHH
Confidence 456677778765 69999999999999 78899999999999999998763211111246778777644
|
| >d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: TrmB-like domain: Hypothetical transcriptional regulator ST1889 species: Sulfolobus tokodaii [TaxId: 111955]
Probab=95.46 E-value=0.0024 Score=45.68 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=34.3
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+|+|+.+||+.+++ +...+.+.|+.|...|+|.+..
T Consensus 35 ~~~t~~eLa~~~~i---~~~tvs~~l~~L~~~GlV~r~~ 70 (109)
T d2d1ha1 35 KPITSEELADIFKL---SKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp SCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCc---cHhHHHHHHHHHHHCCCEEEee
Confidence 78999999999999 8999999999999999999876
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.35 E-value=0.029 Score=42.97 Aligned_cols=87 Identities=16% Similarity=0.080 Sum_probs=60.2
Q ss_pred eEEEecCCc--hHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCC-CCCCccEEEecchhccCChHHHHH
Q 018775 189 SLADVGGGT--GGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFD-AIPKADAVFMKWILHDWDDEACVK 264 (350)
Q Consensus 189 ~vLDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~-~~p~~D~i~~~~vlh~~~~~~~~~ 264 (350)
+|+=||||. |.++..|.+..++.+++++|. ++..+.+++...+.....+... .....|+|++. .|.+....
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila-----~p~~~~~~ 77 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTFRE 77 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC-----SCHHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhcccccccccc-----CCchhhhh
Confidence 477799983 345666777777889999998 7888877654334333333333 22358988873 45667888
Q ss_pred HHHHHHhhCCCCCceEE
Q 018775 265 ILKNCRQAIPDKSGKLV 281 (350)
Q Consensus 265 ~L~~~~~~L~~pgG~ll 281 (350)
+++++.+.++ ++..+.
T Consensus 78 vl~~l~~~~~-~~~ii~ 93 (171)
T d2g5ca2 78 IAKKLSYILS-EDATVT 93 (171)
T ss_dssp HHHHHHHHSC-TTCEEE
T ss_pred hhhhhhcccc-cccccc
Confidence 9999999999 876543
|
| >d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator OEOE1854 species: Oenococcus oeni [TaxId: 1247]
Probab=95.31 E-value=0.022 Score=42.00 Aligned_cols=69 Identities=13% Similarity=0.150 Sum_probs=50.7
Q ss_pred HhcChhhhhhhCC-CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHG-SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|...+ +++|..+||+.+++ +...+.++++.|+..|++.+.....+.-.-.+.+|+.+..+.
T Consensus 30 ~q~~vL~~l~~~~~~~it~~ela~~~~~---~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~ 99 (135)
T d3broa1 30 TQMTIIDYLSRNKNKEVLQRDLESEFSI---KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE 99 (135)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHCc---CHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHHHHHHH
Confidence 4455566665532 57999999999999 899999999999999999987532111112588888776444
|
| >d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Dlm-1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.29 E-value=0.0055 Score=36.34 Aligned_cols=54 Identities=13% Similarity=0.325 Sum_probs=47.1
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEec
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKM 94 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~ 94 (350)
|-.++..|.++|+|+...+|++++++ +...+.++|..|-..+=+...+ +..|++
T Consensus 3 EQkILQVL~dagspvk~~ql~k~cqV---pkk~lNqVL~rlkke~kVsl~~------patW~l 56 (57)
T d1j75a_ 3 EQKILQVLSDDGGPVKIGQLVKKCQV---PKKTLNQVLYRLKKEDRVSSPE------PATWSI 56 (57)
T ss_dssp HHHHHHHHHHHCSCEEHHHHHHHHCS---CHHHHHHHHHHHHHTTSEEEEE------TTEEEE
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHCC---CHHHHHHHHHHHHhccccccCC------CccccC
Confidence 45677788877799999999999999 8899999999999999998887 678865
|
| >d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Archaeal DNA-binding protein domain: Sso10a (SSO10449) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.28 E-value=0.0082 Score=40.97 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=43.5
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.+.-.|...+|+ +...+.+.|+.|...|++.+.+ +.|.+|+.+..+.
T Consensus 17 ~g~~kT~i~~~aNL---s~~~~~kyl~~L~~~GLI~~~~-------~~Y~iT~kG~~~L 65 (90)
T d1r7ja_ 17 SGSPKTRIMYGANL---SYALTGRYIKMLMDLEIIRQEG-------KQYMLTKKGEELL 65 (90)
T ss_dssp TCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET-------TEEEECHHHHHHH
T ss_pred CCCCccHHHHHcCC---CHHHHHHHHHHHHHCCCeeecC-------CEEEECccHHHHH
Confidence 35678999999999 8999999999999999999875 8999999998444
|
| >d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: TrmB-like domain: Hypothetical protein AF2008 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.21 E-value=0.0044 Score=44.24 Aligned_cols=47 Identities=11% Similarity=0.392 Sum_probs=39.6
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..++..|... ++.|+.|||+.+|+ +...+.+.|+.|...|++.+..
T Consensus 22 e~~v~~~L~~~-g~~t~~eia~~~~i---~~~~v~~~l~~L~~~GlV~r~~ 68 (109)
T d1sfxa_ 22 DVRIYSLLLER-GGMRVSEIARELDL---SARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhc-CCCCHHHHHHHhCC---CcchHHHHHHHHHhCCCEEEEe
Confidence 34455566554 79999999999999 8999999999999999998753
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=95.17 E-value=0.012 Score=54.13 Aligned_cols=108 Identities=19% Similarity=0.197 Sum_probs=66.9
Q ss_pred HHHHHHhcccCCCCcceEEEecCCchHHHHHHHHHC----CC--------------CcEEEecc-hhHhhhCCC------
Q 018775 173 MKALVSHYKDGFDSIQSLADVGGGTGGALAEIVKSY----PH--------------IKGINFDL-PHVVATAPV------ 227 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p~--------------~~~~~~D~-~~~~~~a~~------ 227 (350)
+..+++.+. ...+.+|+|-.||+|.++....+.. .. ..+.++|. +.+...++-
T Consensus 153 v~~mv~ll~--~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~ 230 (524)
T d2ar0a1 153 IKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD 230 (524)
T ss_dssp HHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT
T ss_pred hHhhhhccc--CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhc
Confidence 344445555 4567899999999999998765532 11 24688888 665554331
Q ss_pred -----CCCeEEEeccCCC-C---CCCccEEEecchh--ccC-----------ChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 228 -----CEGIFHVGGDMFD-A---IPKADAVFMKWIL--HDW-----------DDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 228 -----~~~i~~~~~d~~~-~---~p~~D~i~~~~vl--h~~-----------~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
...-.+..++.+. + .+.||+|+++-=. ... +.. -..++.++.+.|+ |||++.++-
T Consensus 231 ~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~-~~~Fi~~~l~~Lk-~gGr~aiIl 307 (524)
T d2ar0a1 231 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNK-QLCFMQHIIETLH-PGGRAAVVV 307 (524)
T ss_dssp CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCH-HHHHHHHHHHHEE-EEEEEEEEE
T ss_pred ccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccc-cHHHHHHHHHhcc-ccCcEEEEE
Confidence 1122345556554 2 2359999985311 110 111 2358999999999 999988753
|
| >d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Putative transcriptional regulator TM0816 species: Thermotoga maritima [TaxId: 2336]
Probab=95.16 E-value=0.0061 Score=45.50 Aligned_cols=69 Identities=12% Similarity=0.133 Sum_probs=52.5
Q ss_pred HHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 30 AVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 30 ~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
..++-++..|... +++|+.+||+.+++ +...+.+.++.|+..|++.+.....+.-.-..++|+.+..+.
T Consensus 32 ~~q~~iL~~l~~~-~~~t~~~La~~l~i---~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~ 100 (140)
T d2etha1 32 TTELYAFLYVALF-GPKKMKEIAEFLST---TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF 100 (140)
T ss_dssp HHHHHHHHHHHHH-CCBCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCcCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeeecccccchhhhhcCHHHHHHH
Confidence 3456677788775 68999999999999 899999999999999999988632111112577887776443
|
| >d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Multiple antibiotic resistance repressor, MarR species: Escherichia coli [TaxId: 562]
Probab=94.99 E-value=0.031 Score=41.37 Aligned_cols=68 Identities=19% Similarity=0.208 Sum_probs=50.7
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|... ++.|..+||+.+++ +...+.++++.|...|+|++.....++-.-.+++|+.+..+.
T Consensus 35 ~q~~vL~~l~~~-~~~t~~ela~~~~i---~~~~vs~~v~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~ 102 (138)
T d1jgsa_ 35 AQFKVLCSIRCA-ACITPVELKKVLSV---DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHHHH-SSBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHhHHhC-cCCCHHHHHHHHCC---CHhHHHHHHHHHhhCCCEEEeeccCCCCeeEEEECHHHHHHH
Confidence 445566666554 69999999999999 899999999999999999987532111112578887776543
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.96 E-value=0.011 Score=51.82 Aligned_cols=93 Identities=11% Similarity=-0.020 Sum_probs=68.4
Q ss_pred CcceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---------------------CCCeEEEeccCCC---
Q 018775 186 SIQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---------------------CEGIFHVGGDMFD--- 240 (350)
Q Consensus 186 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------------~~~i~~~~~d~~~--- 240 (350)
++.+|||..||+|..+++.++..+..+++..|+ +..++.+++ ...+.+...|...
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 467999999999999999988877778889999 887776543 1235566666543
Q ss_pred CCC-CccEEEecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 241 AIP-KADAVFMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 241 ~~p-~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
... .||+|.+-- +.. ...+|..+.++++ .||.|.|.-.
T Consensus 125 ~~~~~fDvIDiDP----fGs--~~pfldsAi~a~~-~~Gll~vTaT 163 (375)
T d2dula1 125 ERHRYFHFIDLDP----FGS--PMEFLDTALRSAK-RRGILGVTAT 163 (375)
T ss_dssp HSTTCEEEEEECC----SSC--CHHHHHHHHHHEE-EEEEEEEEEC
T ss_pred hhcCcCCcccCCC----CCC--cHHHHHHHHHHhc-cCCEEEEEec
Confidence 122 399998743 222 2468999999999 9999988643
|
| >d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein BC1842 species: Bacillus cereus [TaxId: 1396]
Probab=94.96 E-value=0.012 Score=43.79 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=38.0
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
.++|.++||+++++ ++..++++|..|...|||.-..+ .|+|.+..
T Consensus 22 ~~vss~~IA~~~~i---~~~~l~kil~~L~~aGlv~S~rG-----~GG~~L~~ 66 (138)
T d1ylfa1 22 SLCTSDYMAESVNT---NPVVIRKIMSYLKQAGFVYVNRG-----PGGAGLLK 66 (138)
T ss_dssp GGCCHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC--------CCEEESS
T ss_pred CcCcHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeecC-----CCCceecC
Confidence 58999999999999 89999999999999999998863 36677653
|
| >d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: DNA-binding protein Mj223 domain: DNA-binding protein Mj223 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.86 E-value=0.011 Score=44.69 Aligned_cols=48 Identities=10% Similarity=0.112 Sum_probs=40.2
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
...++..|..+++|+|+.|||+.+|+ +...+.+.|+.|...|++.+..
T Consensus 28 ~~~i~~~L~~~~~plt~~ela~~l~v---sk~~vs~~l~~L~~~GlV~r~~ 75 (151)
T d1ku9a_ 28 VGAVYAILYLSDKPLTISDIMEELKI---SKGNVSMSLKKLEELGFVRKVW 75 (151)
T ss_dssp HHHHHHHHHHCSSCEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHhCC---CcchHHHHHHHHHHCCCEEEEE
Confidence 34555566444478999999999999 8999999999999999999774
|
| >d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.85 E-value=0.02 Score=34.81 Aligned_cols=53 Identities=15% Similarity=0.315 Sum_probs=43.4
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEec
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKM 94 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~ 94 (350)
++|..|... ...|+..||.++++ +..-+.|.|-.|...|-+.+++.+ +-.|++
T Consensus 6 ~~l~~lg~~-~~~tA~~LA~kl~v---pKk~iNr~LYsL~~kgkl~k~~gt----PPlWr~ 58 (59)
T d2gxba1 6 KFLEELGEG-KATTAHDLSGKLGT---PKKEINRVLYSLAKKGKLQKEAGT----PPLWKI 58 (59)
T ss_dssp HHHHHHCTT-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECSS----SCEEEE
T ss_pred HHHHhcCCc-cchhHHHHHHHhCC---cHHHHHHHHHHHHHccchhhcCCC----CCCccc
Confidence 456666653 68899999999999 889999999999999999999743 455654
|
| >d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Transcriptional regulator LrpC species: Bacillus subtilis [TaxId: 1423]
Probab=94.45 E-value=0.018 Score=36.40 Aligned_cols=48 Identities=19% Similarity=0.350 Sum_probs=42.3
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.+..+++.|..+ +..|..+||+.+|+ ++..+.+=++.|...|++....
T Consensus 6 ~D~~IL~~L~~n-~r~s~~~iA~~lgi---s~~tv~~Ri~~L~~~giI~~~~ 53 (63)
T d2cfxa1 6 IDLNIIEELKKD-SRLSMRELGRKIKL---SPPSVTERVRQLESFGIIKQYT 53 (63)
T ss_dssp HHHHHHHHHHHC-SCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeeeEE
Confidence 356778888876 79999999999999 8899999999999999998764
|
| >d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator PA3341 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.43 E-value=0.021 Score=42.21 Aligned_cols=67 Identities=19% Similarity=0.193 Sum_probs=47.3
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+.++-.|...++++|+.+||+.+++ +...+.++++.|+..|+|.+.....+.-.-...+|+.+..+.
T Consensus 31 ~~iL~~l~~~~~~~t~~~la~~~~~---~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~i~lT~~G~~~~ 97 (137)
T d2fbha1 31 WLVLLHLARHRDSPTQRELAQSVGV---EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI 97 (137)
T ss_dssp HHHHHHHHHCSSCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHCC---CHHHHHHHHHHHHHcCCccccCCCCCCCchhhhcCHHHHHHH
Confidence 3444455443357899999999999 899999999999999999988632111012467776665443
|
| >d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: LprA species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.15 E-value=0.011 Score=36.98 Aligned_cols=47 Identities=13% Similarity=0.254 Sum_probs=41.3
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+..+...|..+ +..|..+||+.+|+ ++..+.+-++.|...|++.+..
T Consensus 5 D~kIl~~L~~n-~r~s~~~lA~~~gl---s~~~v~~Ri~~L~~~giI~~~~ 51 (60)
T d1i1ga1 5 DKIILEILEKD-ARTPFTEIAKKLGI---SETAVRKRVKALEEKGIIEGYT 51 (60)
T ss_dssp HHHHHHHHHHC-TTCCHHHHHHHHTS---CHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeEE
Confidence 45677888876 69999999999999 8999999999999999998764
|
| >d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Regulatory protein AsnC species: Escherichia coli [TaxId: 562]
Probab=94.09 E-value=0.016 Score=36.62 Aligned_cols=48 Identities=8% Similarity=0.168 Sum_probs=42.2
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
++..++..|..+ +..|..|||+++|+ ++..+.+=++.|...|++....
T Consensus 6 ~D~~IL~~L~~~-~r~s~~eiA~~l~l---s~~~v~~Ri~rL~~~GiI~~~~ 53 (63)
T d2cg4a1 6 LDRGILEALMGN-ARTAYAELAKQFGV---SPETIHVRVEKMKQAGIITGAR 53 (63)
T ss_dssp HHHHHHHHHHHC-TTSCHHHHHHHHTS---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeEE
Confidence 356678888876 69999999999999 8899999999999999998764
|
| >d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Putative transcriptional regulator YtcD species: Bacillus subtilis [TaxId: 1423]
Probab=93.98 E-value=0.037 Score=38.05 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=44.3
Q ss_pred CCCCHHHHHhhc-CCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 44 SPITLPQLASRI-DSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 44 ~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
|+....||.+.+ |+ ++..|.+=|+.|+..|++++...+...+.-.|++|+.+..+.
T Consensus 23 g~~rF~el~~~l~gi---s~~~Ls~rLk~Le~~glv~r~~~~~~p~~veY~LT~~G~~L~ 79 (95)
T d2hzta1 23 GKKRTSELKRLMPNI---TQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLE 79 (95)
T ss_dssp CCBCHHHHHHHCTTS---CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred CCCCHHHHHHHhhcC---ChhHHHHHHHHHHHhHHHhheeccccccchhhhhhhhHHHHH
Confidence 799999999998 89 889999999999999999987532111112499998887665
|
| >d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Putative transcriptional regulator YtfH species: Salmonella typhimurium [TaxId: 90371]
Probab=93.96 E-value=0.051 Score=38.73 Aligned_cols=79 Identities=13% Similarity=0.137 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhc-CCCCCCcccHHHHHHHhhcCCceeecccCCCCC
Q 018775 10 GQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRI-DSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGD 88 (350)
Q Consensus 10 ~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~ 88 (350)
|....++++.+-|...+|.. |.. |+....||.+.+ |+ +...|.+=|+.|+..|+|.+...+...+
T Consensus 13 pv~~~l~~ig~kW~l~Il~~---------L~~--g~~RF~el~~~l~gi---s~~~Ls~rL~~Le~~glv~R~~~~~~p~ 78 (114)
T d1yyva1 13 PSREVLKHVTSRWGVLILVA---------LRD--GTHRFSDLRRKMGGV---SEKMLAQSLQALEQDGFLNRVSYPVVPP 78 (114)
T ss_dssp THHHHHHHHHSHHHHHHHHH---------GGG--CCEEHHHHHHHSTTC---CHHHHHHHHHHHHHHTCEEEEEECSSSC
T ss_pred CHHHHHHHHcCCCHHHHHHH---------Hhc--CCCCHHHHHHHcccc---chhHHHHHHHHHHHHHHHhhcccCCCCc
Confidence 46677888888887777654 222 799999999999 78 8899999999999999999885321111
Q ss_pred CCeEecChhchhhh
Q 018775 89 ETLYKMTHISKWLL 102 (350)
Q Consensus 89 ~~~~~~t~~s~~l~ 102 (350)
.-.|.+|+.+..|.
T Consensus 79 ~veY~LT~~G~~L~ 92 (114)
T d1yyva1 79 HVEYSLTPLGEQVS 92 (114)
T ss_dssp EEEEEECHHHHHHH
T ss_pred hhHhHhhHhHHHHH
Confidence 23499999888665
|
| >d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Putative transcriptional regulator PH1519 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.83 E-value=0.015 Score=36.31 Aligned_cols=48 Identities=10% Similarity=0.235 Sum_probs=42.4
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
++..+...|..+ +..|..|||+++|+ ++..+.+=++.|...|++....
T Consensus 4 ~D~~Il~~L~~n-~r~s~~eiA~~l~l---s~~~v~~Ri~~L~~~giI~~~~ 51 (60)
T d2cyya1 4 IDKKIIKILQND-GKAPLREISKITGL---AESTIHERIRKLRESGVIKKFT 51 (60)
T ss_dssp HHHHHHHHHHHC-TTCCHHHHHHHHCS---CHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCc---CHHHHHHHHHHHHHCCCeEeEE
Confidence 456788888886 69999999999999 8999999999999999998764
|
| >d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator TM0710 species: Thermotoga maritima [TaxId: 2336]
Probab=93.76 E-value=0.01 Score=44.17 Aligned_cols=67 Identities=9% Similarity=0.123 Sum_probs=49.5
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++-++..|... ++.|+.+||+.+++ +...+.+.++.|+..|++.+.....+.-.-.+.+|+.+..+.
T Consensus 32 q~~iL~~i~~~-~~~t~~~la~~l~i---~~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~ 98 (139)
T d2a61a1 32 QFDILQKIYFE-GPKRPGELSVLLGV---AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVI 98 (139)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHhCC---CcccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHH
Confidence 34455566554 69999999999999 889999999999999999987531100012477887776554
|
| >d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Iron-dependent repressor protein domain: Iron-dependent regulator IdeR species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.62 E-value=0.054 Score=34.00 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=34.6
Q ss_pred CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 43 GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 43 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+++++..+||+.+|+ .+.-+.+.++-|...|++..+.
T Consensus 21 ~~~v~~~~iA~~L~v---s~~SVt~mvkrL~~~Glv~~~~ 57 (63)
T d2isya1 21 GVTPLRARIAERLDQ---SGPTVSQTVSRMERDGLLRVAG 57 (63)
T ss_dssp TCCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEECT
T ss_pred CCCCcHHHHHHHhCC---CchhHHHHHHHHHHCCCEEEcC
Confidence 378999999999999 8899999999999999999986
|
| >d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Organic hydroperoxide resistance transcriptional regulator OhrR species: Bacillus subtilis [TaxId: 1423]
Probab=93.50 E-value=0.025 Score=41.81 Aligned_cols=66 Identities=14% Similarity=0.250 Sum_probs=49.4
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+.++..|... +++|..+||+.+++ ++..+.+.++-|+..|+|.+.....+.-.-..++|+.+..+.
T Consensus 36 ~~vL~~l~~~-~~~t~~~La~~~~i---~~~~vsr~i~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~ 101 (137)
T d1z91a1 36 YLALLLLWEH-ETLTVKKMGEQLYL---DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLK 101 (137)
T ss_dssp HHHHHHHHHH-SEEEHHHHHHTTTC---CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGG
T ss_pred HHHHHHHHcC-CCCCHHHHHHHHCc---CHHHHHHHHHHHhhccceEEeecCCCCCeEEEEECHHHHHHH
Confidence 4455566544 69999999999999 899999999999999999988632111012368888877544
|
| >d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator SlyA species: Salmonella typhimurium [TaxId: 90371]
Probab=93.42 E-value=0.027 Score=41.75 Aligned_cols=69 Identities=20% Similarity=0.213 Sum_probs=47.9
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
.++.++..|...++++|..+||+.+++ +...+.+.++.|+..|+|.+.....+.-.-.+++|+.+..+.
T Consensus 32 ~~~~~L~~l~~~~~~~t~~~la~~l~i---~~~~vs~~l~~L~~~glI~~~~~~~D~R~~~l~lT~~G~~~~ 100 (140)
T d3deua1 32 THWVTLHNIHQLPPDQSQIQLAKAIGI---EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI 100 (140)
T ss_dssp HHHHHHHHHHHSCSSEEHHHHHHHHTS---CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHH
T ss_pred HHHHHHHHHHHcCCCccHHHHHHHHCC---CHhHHHHHHHHHHhCCCEEecccCCCCCceeeEECHHHHHHH
Confidence 334455566543357999999999999 899999999999999999987632110012578888776444
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.35 E-value=0.035 Score=42.84 Aligned_cols=93 Identities=17% Similarity=0.115 Sum_probs=58.9
Q ss_pred CCCcceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEecc---CCCC----CC-CccEEEecch
Q 018775 184 FDSIQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGD---MFDA----IP-KADAVFMKWI 253 (350)
Q Consensus 184 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d---~~~~----~p-~~D~i~~~~v 253 (350)
.+++.+||=+||| .|.++..+++.....++++.|. +.-.+.+++..-..++..+ ..+. .+ .+|+++-.-
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~- 104 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALEST- 104 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECS-
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcC-
Confidence 6788899999998 5566777887766667777786 6666666541111222221 1110 12 388877421
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
.. ...++.+.+.++ |+|+++++-.
T Consensus 105 ----G~---~~~~~~~~~~~~-~~G~i~~~G~ 128 (174)
T d1f8fa2 105 ----GS---PEILKQGVDALG-ILGKIAVVGA 128 (174)
T ss_dssp ----CC---HHHHHHHHHTEE-EEEEEEECCC
T ss_pred ----Cc---HHHHHHHHhccc-CceEEEEEee
Confidence 11 246788899999 9999987653
|
| >d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Iron-dependent repressor protein domain: Manganese transport regulator MntR species: Bacillus subtilis [TaxId: 1423]
Probab=93.28 E-value=0.029 Score=35.13 Aligned_cols=36 Identities=6% Similarity=0.154 Sum_probs=32.6
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
++++..+||+.+|+ .+.-+...++-|...|++..+.
T Consensus 20 ~~v~~~~iA~~L~v---s~~SVs~mikrL~~~GlV~~~~ 55 (61)
T d2ev0a1 20 GYARVSDIAEALAV---HPSSVTKMVQKLDKDEYLIYEK 55 (61)
T ss_dssp SSCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC--
T ss_pred CCccHHHHHHHhCC---CchhHHHHHHHHHHCCCEEEcc
Confidence 79999999999999 8899999999999999999875
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.14 E-value=0.052 Score=42.74 Aligned_cols=103 Identities=20% Similarity=0.123 Sum_probs=65.0
Q ss_pred CCCcceEEEecCCc-hHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEE---eccCCCC------CCCccEEEecc
Q 018775 184 FDSIQSLADVGGGT-GGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHV---GGDMFDA------IPKADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~---~~d~~~~------~p~~D~i~~~~ 252 (350)
.+++.+||-+|||. |..+..+++.....++++.|. ++-++.+++..--.++ ..|+.+. -..+|+++-.-
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~v 102 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAV 102 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECc
Confidence 67899999999997 667777888777778889998 7777777652111111 1111110 12378887432
Q ss_pred h------hcc-CChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 253 I------LHD-WDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 253 v------lh~-~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
- .|+ .........|+.+.++++ |||++.++-...
T Consensus 103 G~~~~~~~~~~~~~~~~~~~l~~~~~~~r-~gG~v~~~G~~~ 143 (195)
T d1kola2 103 GFEARGHGHEGAKHEAPATVLNSLMQVTR-VAGKIGIPGLYV 143 (195)
T ss_dssp CTTCBCSSTTGGGSBCTTHHHHHHHHHEE-EEEEEEECSCCC
T ss_pred cccccCCcccceeecCcHHHHHHHHHHHh-cCCEEEEeeecC
Confidence 1 010 011112357999999999 999999876543
|
| >d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator SlyA species: Enterococcus faecalis [TaxId: 1351]
Probab=93.01 E-value=0.037 Score=41.26 Aligned_cols=66 Identities=15% Similarity=0.091 Sum_probs=47.8
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+.++..|... +++|..+||+.+++ +...+.+.++.|+..|++.+.....+.-.-...+|+.+..+.
T Consensus 32 ~~iL~~i~~~-~~~t~~~la~~l~i---~~~tvs~~l~~L~~~glI~r~~~~~D~R~~~l~LT~~G~~~~ 97 (144)
T d1lj9a_ 32 YLYLVRVCEN-PGIIQEKIAELIKV---DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHHHHHS-TTEEHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHhC-CCCCHHHHHHHHCc---cHhhHHHHHHHHHhhhcccccCCCCCCCccccccCHHHHHHH
Confidence 3344456555 58999999999999 899999999999999999988632111011466777665443
|
| >d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.98 E-value=0.042 Score=35.34 Aligned_cols=61 Identities=13% Similarity=0.210 Sum_probs=49.9
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhcCCCCCCc-ccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 31 VELRLADIMHSHGSPITLPQLASRIDSSCPDI-PYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~-~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
.+..|++.|... +|.++-.||+.+|+ +. .-+.+.|..|...|-+.+.+.+ +-.|.++...+
T Consensus 6 ~eekI~~~L~~~-g~~~Al~iak~lGl---~kakeVN~~LY~L~k~g~v~k~~~t----PP~W~L~~~~~ 67 (73)
T d1xmka1 6 IKEKICDYLFNV-SDSSALNLAKNIGL---TKARDINAVLIDMERQGDVYRQGTT----PPIWHLTDKKR 67 (73)
T ss_dssp HHHHHHHHHHHT-CCEEHHHHHHHHCG---GGHHHHHHHHHHHHHTTSEEEECSS----SCEEEECHHHH
T ss_pred HHHHHHHHHHHc-CCchHHHHHHHhCC---CcHHHHhHHHHHHHHCCCeecCCCC----CCceeeecchh
Confidence 456788888876 69999999999999 55 3599999999999999998743 55798887554
|
| >d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: LexA repressor, N-terminal DNA-binding domain domain: LexA repressor, N-terminal DNA-binding domain species: Escherichia coli [TaxId: 562]
Probab=92.80 E-value=0.05 Score=35.15 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=34.3
Q ss_pred CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 43 GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 43 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
|-|-|+.|||+.+|+. ++..+.+.|..|+..|+|.+..
T Consensus 22 G~~Ps~rei~~~~g~~--S~stv~~~l~~Le~kG~I~r~~ 59 (71)
T d1jhfa1 22 GMPPTRAEIAQRLGFR--SPNAAEEHLKALARKGVIEIVS 59 (71)
T ss_dssp SSCCCHHHHHHHTTCS--SHHHHHHHHHHHHHTTSEEECS
T ss_pred CCCCCHHHHHHHcCCC--CHHHHHHHHHHHHHCcCeecCC
Confidence 4689999999999993 5778999999999999999985
|
| >d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Pleiotropic regulator of virulence genes, SarA species: Staphylococcus aureus [TaxId: 1280]
Probab=92.47 E-value=0.033 Score=39.85 Aligned_cols=66 Identities=8% Similarity=0.189 Sum_probs=47.0
Q ss_pred cChhhhhhhCC-CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 33 LRLADIMHSHG-SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 33 lglfd~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
+.++..|...+ +++|..+||+.+++ +...+.+.++.|+..|++.+.....+.-.-...+|+.++..
T Consensus 36 ~~vL~~l~~~~~~~~t~~~la~~l~~---~~~tvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~ 102 (115)
T d2frha1 36 FAVLTYISENKEKEYYLKDIINHLNY---KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKK 102 (115)
T ss_dssp HHHHHHHHHTCCSEEEHHHHHHHSSS---HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHCC---CHhHHHHHHHHHHhhhhheeeecccCCceEEEEECHHHHHH
Confidence 33444453322 56899999999999 88999999999999999999863211111246778777643
|
| >d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein PG0823 species: Porphyromonas gingivalis [TaxId: 837]
Probab=92.23 E-value=0.055 Score=37.70 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhc-CCCCCCcccHHHHHHHhhcCCceeecccCCCCC
Q 018775 10 GQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRI-DSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGD 88 (350)
Q Consensus 10 ~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~ 88 (350)
|....++++.+-|...+|.. |.. |+....||.+.+ |+ ++..|.+=|+.|++.|+|.+.......+
T Consensus 9 pv~~~l~ilg~kW~l~Il~~---------L~~--g~~rF~el~~~l~gI---s~~~Ls~rLkeL~~~glv~r~~~~~~p~ 74 (102)
T d2fswa1 9 PVRKSMQIFAGKWTLLIIFQ---------INR--RIIRYGELKRAIPGI---SEKMLIDELKFLCGKGLIKKKQYPEVPP 74 (102)
T ss_dssp HHHHHHHHHTSSSHHHHHHH---------HTT--SCEEHHHHHHHSTTC---CHHHHHHHHHHHHHTTSEEEEEECSSSC
T ss_pred CHHHHHHHHcCCCHHHHHHH---------Hcc--CCCCHHHHHhhCccc---chhHHHHHHHHHHHCCceeecccCCCCC
Confidence 56677777777777666554 222 689999999998 89 8899999999999999999874211111
Q ss_pred CCeEecChhchhhh
Q 018775 89 ETLYKMTHISKWLL 102 (350)
Q Consensus 89 ~~~~~~t~~s~~l~ 102 (350)
.-.|++|+.+..|.
T Consensus 75 ~veY~LT~~G~~L~ 88 (102)
T d2fswa1 75 RVEYSLTPLGEKVL 88 (102)
T ss_dssp EEEEEECHHHHTTH
T ss_pred eehhhhhHhHHHHH
Confidence 12499999887654
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.18 E-value=0.36 Score=40.23 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=49.5
Q ss_pred CCCcceEEEecCCchHHHHHHHHH-CCCCcEEEecc-hhHhhhCCC------CCCeEEEeccCCC--CC----CCccEEE
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKS-YPHIKGINFDL-PHVVATAPV------CEGIFHVGGDMFD--AI----PKADAVF 249 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------~~~i~~~~~d~~~--~~----p~~D~i~ 249 (350)
..++.+|||+.+|.|.-+..++.. .+..+++.+|. +.-++.+++ ..++.+...|... +. ..||.|+
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL 171 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 171 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence 567889999999999999888875 45667888887 555544432 4678888888775 21 2489888
Q ss_pred e
Q 018775 250 M 250 (350)
Q Consensus 250 ~ 250 (350)
+
T Consensus 172 ~ 172 (293)
T d2b9ea1 172 L 172 (293)
T ss_dssp E
T ss_pred e
Confidence 7
|
| >d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein EF0647 species: Enterococcus faecalis [TaxId: 1351]
Probab=92.10 E-value=0.074 Score=37.43 Aligned_cols=81 Identities=9% Similarity=0.006 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhc-CCCCCCcccHHHHHHHhhcCCceeecccCCC
Q 018775 8 LRGQAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRI-DSSCPDIPYLARLMRMLVRKGIFAVHQSSDG 86 (350)
Q Consensus 8 ~~~~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~ 86 (350)
.-+.+..++++.+-|...+|.. |.. |+....||.+.+ |+ ++..|.+=|+.|+..|+|.+......
T Consensus 6 ~c~i~~al~iig~kW~~~Il~~---------L~~--g~~RF~el~~~l~gI---S~~~Ls~rLk~L~~~glv~R~~~~~~ 71 (108)
T d1z7ua1 6 QTSINLALSTINGKWKLSLMDE---------LFQ--GTKRNGELMRALDGI---TQRVLTDRLREMEKDGLVHRESFNEL 71 (108)
T ss_dssp HHHHHHHHHTTCSTTHHHHHHH---------HHH--SCBCHHHHHHHSTTC---CHHHHHHHHHHHHHHTSEEEEEECCS
T ss_pred CCcHHHHHHHHcCCCHHHHHHH---------HHc--CCCCHHHHHHHCcCC---ChhHHHHHHHHHHHCCcceeeccCCC
Confidence 4566777777777777766654 223 699999999998 79 88999999999999999998652111
Q ss_pred CCCCeEecChhchhhh
Q 018775 87 GDETLYKMTHISKWLL 102 (350)
Q Consensus 87 ~~~~~~~~t~~s~~l~ 102 (350)
.+.-.|.+|+.+..+.
T Consensus 72 p~~veY~LT~~G~~L~ 87 (108)
T d1z7ua1 72 PPRVEYTLTPEGYALY 87 (108)
T ss_dssp SCEEEEEECHHHHHHH
T ss_pred cceehhhhchhHHHHH
Confidence 1112399999888665
|
| >d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Probable transcriptional regulator PA4135 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.06 E-value=0.02 Score=42.35 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=48.6
Q ss_pred hcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 32 ELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 32 ~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++.++..|... +++|..+||+.+++ +...+.++++.|+..|++++.....+.-.-..++|+.+..+.
T Consensus 32 q~~vL~~l~~~-~~~t~~~la~~~~i---~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~ 98 (136)
T d2fbia1 32 QWRVIRILRQQ-GEMESYQLANQACI---LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCF 98 (136)
T ss_dssp HHHHHHHHHHH-CSEEHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEeecCccCchhhhccCHHHHHHH
Confidence 44455666554 69999999999999 899999999999999999987521100001367777776443
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.88 E-value=0.032 Score=42.96 Aligned_cols=90 Identities=16% Similarity=0.146 Sum_probs=58.3
Q ss_pred CCCcceEEEecC--CchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--CCCe-EEEeccCCCC------CCCccEEEec
Q 018775 184 FDSIQSLADVGG--GTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--CEGI-FHVGGDMFDA------IPKADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i-~~~~~d~~~~------~p~~D~i~~~ 251 (350)
.+++.+||-.|| |.|..+..+++.. +.++++.+. ++-.+.+++ .+.+ .+...|+.+. ...+|+|+..
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~ 104 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEM 104 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred CCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeec
Confidence 678889999985 5888889999876 567777765 655565554 2221 1111222211 1238988863
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
. - ...+++..++++ |+|+++.+-
T Consensus 105 ~------g---~~~~~~~~~~l~-~~G~iv~~G 127 (174)
T d1yb5a2 105 L------A---NVNLSKDLSLLS-HGGRVIVVG 127 (174)
T ss_dssp C------H---HHHHHHHHHHEE-EEEEEEECC
T ss_pred c------c---HHHHHHHHhccC-CCCEEEEEe
Confidence 2 1 135788889999 999999864
|
| >d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarR species: Staphylococcus aureus [TaxId: 1280]
Probab=91.82 E-value=0.049 Score=38.86 Aligned_cols=66 Identities=12% Similarity=0.134 Sum_probs=46.3
Q ss_pred cChhhhhhhC-CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 33 LRLADIMHSH-GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 33 lglfd~L~~~-~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
+.++..|... ++++|..+||+.+++ +...+.++++.|+..|++.+.....+.-.-...+|+.+..+
T Consensus 35 ~~vL~~l~~~~~~~~t~~ela~~l~~---~~~~vs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~ 101 (115)
T d1hsja1 35 IYILNHILRSESNEISSKEIAKCSEF---KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKAN 101 (115)
T ss_dssp HHHHHHHHTCSCSEEEHHHHHHSSCC---CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHH
T ss_pred HHHHHHHHccCCCCcCHHHHHHHHCC---ChhhHHHHHHHHHHcCCeEEEeecCCCceEEEEECHHHHHH
Confidence 3445555321 268999999999999 89999999999999999998753211101236677666543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.67 E-value=0.095 Score=39.92 Aligned_cols=92 Identities=15% Similarity=0.066 Sum_probs=58.8
Q ss_pred CCCcceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC---C-CCCccEEEec-chhc
Q 018775 184 FDSIQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD---A-IPKADAVFMK-WILH 255 (350)
Q Consensus 184 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~---~-~p~~D~i~~~-~vlh 255 (350)
.+++.+||-+|+| .|.++..+++.. +.+++++|. ++-.+.+++ .....+...+-.+ . ...+|+++-. ...+
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~ 103 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT 103 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCc
Confidence 6788999999998 777778787764 678988997 666666655 1112122222111 1 2248877653 2222
Q ss_pred cCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 256 DWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 256 ~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
.. .+....+.++ |+|+++++-
T Consensus 104 ~~-------~~~~~~~~l~-~~G~iv~~G 124 (168)
T d1piwa2 104 DI-------DFNIMPKAMK-VGGRIVSIS 124 (168)
T ss_dssp TC-------CTTTGGGGEE-EEEEEEECC
T ss_pred cc-------hHHHHHHHhh-ccceEEEec
Confidence 11 1446788899 999999875
|
| >d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Protease production regulatory protein Hpr species: Bacillus subtilis [TaxId: 1423]
Probab=91.64 E-value=0.037 Score=42.23 Aligned_cols=66 Identities=9% Similarity=0.066 Sum_probs=48.5
Q ss_pred cChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 33 LRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 33 lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
..++..|... +++|+.+||+.+++ +...+.++++.|...|++.+.....+.-.-..++|+.+..+.
T Consensus 44 ~~vL~~l~~~-~~~t~~~la~~~~l---~~~tvs~~i~rL~~~gli~r~~~~~D~R~~~l~lT~~G~~~~ 109 (162)
T d2fxaa1 44 HHILWIAYQL-NGASISEIAKFGVM---HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF 109 (162)
T ss_dssp HHHHHHHHHH-TSEEHHHHHHHTTC---CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred HHHHhhhccC-CCcCHHHHHHHHcC---CchhhHHHHHHHHHCCCceeecccccCeeeeeccCHhHHHHH
Confidence 4466667554 68999999999999 899999999999999999987632111112467787776443
|
| >d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarS species: Staphylococcus aureus [TaxId: 1280]
Probab=91.64 E-value=0.074 Score=38.50 Aligned_cols=66 Identities=12% Similarity=0.191 Sum_probs=46.9
Q ss_pred HhcChhhhhhhCC-CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhch
Q 018775 31 VELRLADIMHSHG-SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISK 99 (350)
Q Consensus 31 ~~lglfd~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~ 99 (350)
.++.++..|...+ +++|+.|||+.+++ +...+.+.++.|...|+|.+.....+.-.-...+|+.++
T Consensus 35 ~q~~iL~~l~~~~~~~~t~~eia~~~~~---~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~ 101 (125)
T d1p4xa1 35 KEFILLTYLFHQQENTLPFKKIVSDLCY---KQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQR 101 (125)
T ss_dssp HHHHHHHHHHSCSCSEEEHHHHHHHSSS---CGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHH
T ss_pred HHHHHHHHHHHhccCCcCHHHHHHHhCC---CcchHHHHHHHHHHCCCceeecccCCCCeEEEEECHHHH
Confidence 3445555664322 57899999999999 889999999999999999998632111011356676665
|
| >d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarS species: Staphylococcus aureus [TaxId: 1280]
Probab=91.58 E-value=0.055 Score=39.25 Aligned_cols=67 Identities=19% Similarity=0.298 Sum_probs=47.3
Q ss_pred hcChhhhhhhCC-CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 32 ELRLADIMHSHG-SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 32 ~lglfd~L~~~~-~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
++-++..|...+ +++|+.+||+.+++ +...+.+.++.|+..|+|.+.....+.-.-...+|+.++.+
T Consensus 35 q~~vL~~l~~~~~~~~~~~~ia~~l~~---~~~~vs~~v~~L~~~glV~r~~~~~D~R~v~i~LT~~G~~~ 102 (125)
T d1p4xa2 35 EFTILAIITSQNKNIVLLKDLIETIHH---KYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDH 102 (125)
T ss_dssp HHHHHHHHHTTTTCCEEHHHHHHHSSS---CHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHH
T ss_pred HHHHHHHHHHccCCCccHHHHHHHHCC---CcchHHHHHHHHHhccCEeeeecCCCCCeEEEEECHHHHHH
Confidence 445566664321 57899999999999 89999999999999999998753211101136677666533
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.54 E-value=0.28 Score=37.17 Aligned_cols=94 Identities=15% Similarity=0.064 Sum_probs=59.5
Q ss_pred CCCcceEEEecCCc-hHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCC----------CC-CccEEEe
Q 018775 184 FDSIQSLADVGGGT-GGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDA----------IP-KADAVFM 250 (350)
Q Consensus 184 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~----------~p-~~D~i~~ 250 (350)
.+++.+||=+|||. |..+..+++.....++++.|. ++-++.+++..--.++..+-..+ .+ .+|+++-
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence 66788999999984 555566676654447899998 77777666511111111111110 12 3888875
Q ss_pred cchhccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 251 KWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 251 ~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
.- +. ...++.+.+.++ |||++++.-..
T Consensus 104 ~~-----G~---~~~~~~a~~~~~-~gG~iv~~G~~ 130 (171)
T d1pl8a2 104 CT-----GA---EASIQAGIYATR-SGGTLVLVGLG 130 (171)
T ss_dssp CS-----CC---HHHHHHHHHHSC-TTCEEEECSCC
T ss_pred cc-----CC---chhHHHHHHHhc-CCCEEEEEecC
Confidence 32 12 246889999999 99999987643
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=90.97 E-value=0.31 Score=37.31 Aligned_cols=94 Identities=15% Similarity=0.063 Sum_probs=60.1
Q ss_pred CCCcceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCCC-CCeEEEec--cCC-------C-CCC-CccEEE
Q 018775 184 FDSIQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPVC-EGIFHVGG--DMF-------D-AIP-KADAVF 249 (350)
Q Consensus 184 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~i~~~~~--d~~-------~-~~p-~~D~i~ 249 (350)
.+++.+||-+|+| .|.++..+++.+---++++.|. ++-.+.+++. ....+-.. |.. + ..+ .+|+|+
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvi 105 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL 105 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEe
Confidence 5678999999998 5888888888764347888887 7766666541 11212111 111 1 112 389887
Q ss_pred ecchhccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 250 MKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 250 ~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
-.- +.+ ..++.+.+.++ |||+++++-..
T Consensus 106 d~v-----G~~---~~~~~a~~~l~-~~G~iv~~G~~ 133 (182)
T d1vj0a2 106 EAT-----GDS---RALLEGSELLR-RGGFYSVAGVA 133 (182)
T ss_dssp ECS-----SCT---THHHHHHHHEE-EEEEEEECCCC
T ss_pred ecC-----Cch---hHHHHHHHHhc-CCCEEEEEeec
Confidence 421 111 34778889999 99999887643
|
| >d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Putative transcriptional regulator RHA1 ro03477 species: Rhodococcus sp. RHA1 [TaxId: 101510]
Probab=90.87 E-value=0.2 Score=31.90 Aligned_cols=51 Identities=14% Similarity=0.209 Sum_probs=40.6
Q ss_pred HHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 25 MALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 25 ~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
..|...+..|-|.. |..++..+||+.+|+ +..-+++-|+.|++.|+++...
T Consensus 9 ~~l~~~I~~g~~~~----G~~l~~~~La~~~~v---Sr~tvr~Al~~L~~~Gli~~~~ 59 (69)
T d2hs5a1 9 GILRDAIIDGTFRP----GARLSEPDICAALDV---SRNTVREAFQILIEDRLVAHEL 59 (69)
T ss_dssp HHHHHHHHHTSSCT----TCEECHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHcCCCCC----cCccCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEEEc
Confidence 34455555555442 356788999999999 8899999999999999999987
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=90.83 E-value=0.067 Score=43.72 Aligned_cols=64 Identities=16% Similarity=0.213 Sum_probs=45.5
Q ss_pred cceEEEecCCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC---------------CCCeEEEeccCCC---CC-CCcc
Q 018775 187 IQSLADVGGGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV---------------CEGIFHVGGDMFD---AI-PKAD 246 (350)
Q Consensus 187 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~i~~~~~d~~~---~~-p~~D 246 (350)
..+|||.-||.|..+..++.. +.+++.++. |.+....+. ..|++++.+|..+ .. +.||
T Consensus 89 ~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~D 166 (250)
T d2oyra1 89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (250)
T ss_dssp CCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred CCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCC
Confidence 458999999999999999987 468999997 544332211 2489999998655 22 2478
Q ss_pred EEEecc
Q 018775 247 AVFMKW 252 (350)
Q Consensus 247 ~i~~~~ 252 (350)
+|.+=-
T Consensus 167 vIYlDP 172 (250)
T d2oyra1 167 VVYLDP 172 (250)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887643
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=90.75 E-value=0.73 Score=34.94 Aligned_cols=93 Identities=15% Similarity=-0.016 Sum_probs=60.8
Q ss_pred CCCcceEEEecCCc-hHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEE---eccCC-CC------CCCccEEEec
Q 018775 184 FDSIQSLADVGGGT-GGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHV---GGDMF-DA------IPKADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~---~~d~~-~~------~p~~D~i~~~ 251 (350)
.+++.+||=+|||. |.++..+++..-..++++.|. ++-.+.+++..-..++ ..|-. .. ...+|+++-.
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~ 105 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC 105 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence 67788999999995 888888999876667888888 6666666552111122 11111 00 1238888742
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCC-ceEEEEee
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKS-GKLVLVEI 285 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pg-G~lli~e~ 285 (350)
- .. ...+.+..+.++ || |+++++-.
T Consensus 106 ~-----G~---~~~~~~a~~~~~-~g~G~~v~vG~ 131 (174)
T d1e3ia2 106 A-----GT---AQTLKAAVDCTV-LGWGSCTVVGA 131 (174)
T ss_dssp S-----CC---HHHHHHHHHTBC-TTTCEEEECCC
T ss_pred c-----cc---chHHHHHHHHhh-cCCeEEEecCC
Confidence 2 22 246889999999 96 99988653
|
| >d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein PA1607 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.75 E-value=0.15 Score=37.66 Aligned_cols=77 Identities=16% Similarity=0.225 Sum_probs=56.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCC
Q 018775 11 QAEVWQLMFAFADSMALKSAVELRLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDET 90 (350)
Q Consensus 11 ~~~l~~~~~g~~~~~~l~~~~~lglfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~ 90 (350)
....++++..-|...+|..+. . |+....||.+.+|+ ++..|.+=|+.|...|+|.+... .+.+..
T Consensus 10 v~~~l~ilg~kW~l~Il~~l~---------~--G~~rf~el~~~lgi---s~~vLs~rL~~L~~~gLv~r~~~-~~p~r~ 74 (142)
T d2f2ea1 10 VARPLDVIGDGWSMLIVRDAF---------E--GLTRFGEFQKSLGL---AKNILAARLRNLVEHGVMVAVPA-ESGSHQ 74 (142)
T ss_dssp TTTTHHHHCSSSHHHHHHHHH---------T--TCCSHHHHHHHHCC---CHHHHHHHHHHHHHTTSEEEEEC-SSSSCE
T ss_pred HHHHHHHHcCCCHHHHHHHHH---------c--CCCCHHHHHHHhhc---cHHHHHHHHHHHHHhcceeeecC-CCCCee
Confidence 445556666666666666532 2 79999999999999 78889999999999999998431 111123
Q ss_pred eEecChhchhhh
Q 018775 91 LYKMTHISKWLL 102 (350)
Q Consensus 91 ~~~~t~~s~~l~ 102 (350)
.|++|+.+..|.
T Consensus 75 ~Y~LT~~G~~L~ 86 (142)
T d2f2ea1 75 EYRLTDKGRALF 86 (142)
T ss_dssp EEEECHHHHTTH
T ss_pred EEecCcCcchHH
Confidence 599998887654
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=90.66 E-value=0.62 Score=34.97 Aligned_cols=92 Identities=15% Similarity=0.085 Sum_probs=60.7
Q ss_pred CCCcceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCCC-----------CC-CccEE
Q 018775 184 FDSIQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFDA-----------IP-KADAV 248 (350)
Q Consensus 184 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~-----------~p-~~D~i 248 (350)
.+++.+||-+||| .|.++..+++.. +.+++++|. ++-.+.+++ .....+..-+...+ .+ .+|++
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence 6678899999988 777777788765 579999998 777776654 22222222111111 12 37888
Q ss_pred EecchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 249 FMKWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 249 ~~~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
+-.- +. ...+..+.+.++ |+|+++++-.
T Consensus 103 id~~-----g~---~~~~~~a~~~~~-~~G~iv~~G~ 130 (170)
T d1e3ja2 103 IDCS-----GN---EKCITIGINITR-TGGTLMLVGM 130 (170)
T ss_dssp EECS-----CC---HHHHHHHHHHSC-TTCEEEECSC
T ss_pred eecC-----CC---hHHHHHHHHHHh-cCCceEEEec
Confidence 7432 12 245788889999 9999998763
|
| >d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: 34L species: Yaba-like disease virus, YLDV [TaxId: 132475]
Probab=90.59 E-value=0.13 Score=32.50 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=38.9
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeeccc
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQS 83 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 83 (350)
..+.|... +..|+.+||+.+|+ +..-+-|.|-.|...|.|.+++.
T Consensus 15 ~l~~L~~~-~~~tA~~LAk~Lg~---~Kk~VNr~LY~L~~~G~v~~~~~ 59 (70)
T d1sfua_ 15 EVLSLNTN-DYTTAISLSNRLKI---NKKKINQQLYKLQKEDTVKMVPS 59 (70)
T ss_dssp HHHTSCTT-CEECHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHhcCCC-CCchHHHHHHHhCC---CHHHHHHHHHHHHHCCCeecCCC
Confidence 34566653 68899999999999 77899999999999999999973
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=90.51 E-value=0.047 Score=41.73 Aligned_cols=89 Identities=13% Similarity=0.120 Sum_probs=57.3
Q ss_pred CCCcceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC------CCCCccEEEecchh
Q 018775 184 FDSIQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD------AIPKADAVFMKWIL 254 (350)
Q Consensus 184 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~------~~p~~D~i~~~~vl 254 (350)
.+++.+||=+|+| .|.++..+++.. +.+.++.|. ++-.+.+++ .... ++ |..+ ....+|+++-.--
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad~-~i--~~~~~~~~~~~~~~~D~vid~~g- 102 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADE-VV--NSRNADEMAAHLKSFDFILNTVA- 102 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSE-EE--ETTCHHHHHTTTTCEEEEEECCS-
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCcE-EE--ECchhhHHHHhcCCCceeeeeee-
Confidence 6788898889987 678888888876 567777776 555555544 1111 11 1222 1224898775321
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
.+ ..++...+.++ |+|+++++-.
T Consensus 103 ----~~---~~~~~~~~~l~-~~G~iv~~G~ 125 (168)
T d1uufa2 103 ----AP---HNLDDFTTLLK-RDGTMTLVGA 125 (168)
T ss_dssp ----SC---CCHHHHHTTEE-EEEEEEECCC
T ss_pred ----cc---hhHHHHHHHHh-cCCEEEEecc
Confidence 11 23667888999 9999998753
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.03 E-value=0.28 Score=37.03 Aligned_cols=92 Identities=27% Similarity=0.341 Sum_probs=59.4
Q ss_pred CCCcceEEEecC-C-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCC---C-----CC-CccEEEe
Q 018775 184 FDSIQSLADVGG-G-TGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFD---A-----IP-KADAVFM 250 (350)
Q Consensus 184 ~~~~~~vLDvG~-G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~---~-----~p-~~D~i~~ 250 (350)
.+++.+||=+|| | .|..+..+++.....++++.+. ++-.+.+++ ... .++..+-.+ . .+ .+|+++-
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~-~~i~~~~~~~~~~~~~~~~~~~~d~vid 103 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD-YVINASMQDPLAEIRRITESKGVDAVID 103 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS-EEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCc-eeeccCCcCHHHHHHHHhhcccchhhhc
Confidence 678889999996 3 6777787888766668888887 665555554 111 122222111 1 12 3888876
Q ss_pred cchhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 251 KWILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 251 ~~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
.. .. ...++.+.+.++ |||+++++-.
T Consensus 104 ~~-----g~---~~~~~~a~~~l~-~~G~iv~~G~ 129 (170)
T d1jvba2 104 LN-----NS---EKTLSVYPKALA-KQGKYVMVGL 129 (170)
T ss_dssp SC-----CC---HHHHTTGGGGEE-EEEEEEECCS
T ss_pred cc-----cc---chHHHhhhhhcc-cCCEEEEecc
Confidence 32 12 245778889999 9999998753
|
| >d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Probable transcription regulator BT4300, C-terminal domain species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=90.02 E-value=0.14 Score=33.01 Aligned_cols=41 Identities=15% Similarity=0.308 Sum_probs=36.3
Q ss_pred CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecC
Q 018775 45 PITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMT 95 (350)
Q Consensus 45 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t 95 (350)
++|-++||+-+|+ ..+.+.|.|..|...|+++... +.+...
T Consensus 27 ~lt~~elA~~lg~---sr~tvsr~l~~l~~~g~I~~~~-------~~i~I~ 67 (73)
T d1zyba1 27 KVKMDDLARCLDD---TRLNISKTLNELQDNGLIELHR-------KEILIP 67 (73)
T ss_dssp ECCHHHHHHHHTS---CHHHHHHHHHHHHHTTSCEEET-------TEEEES
T ss_pred ecCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC-------CEEEEc
Confidence 6799999999999 8999999999999999999875 666554
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=89.46 E-value=0.68 Score=34.90 Aligned_cols=94 Identities=19% Similarity=0.059 Sum_probs=57.6
Q ss_pred CCCcceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCCC--------CC-CccEEEec
Q 018775 184 FDSIQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFDA--------IP-KADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~--------~p-~~D~i~~~ 251 (350)
.+++.+||=+||| .|.++..+++..-..++++.|. ++-.+.+++ ...-.+...+-.++ .+ .+|+++-.
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~ 105 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFEC 105 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeec
Confidence 6788899988877 5667777888776667788887 666666654 11111111111111 12 38988863
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeee
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIV 286 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~ 286 (350)
- ..+ ..++.+...++ +||.++++-..
T Consensus 106 ~-----G~~---~~~~~~~~~~~-~g~~~~~v~~~ 131 (176)
T d2fzwa2 106 I-----GNV---KVMRAALEACH-KGWGVSVVVGV 131 (176)
T ss_dssp S-----CCH---HHHHHHHHTBC-TTTCEEEECSC
T ss_pred C-----CCH---HHHHHHHHhhc-CCceeEEEEee
Confidence 2 222 45788889999 99887765433
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.46 E-value=0.27 Score=37.71 Aligned_cols=97 Identities=9% Similarity=0.010 Sum_probs=57.5
Q ss_pred CCCcceEEEec--CCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--CCCeEEEeccCCCC----CC-CccEEEecch
Q 018775 184 FDSIQSLADVG--GGTGGALAEIVKSYPHIKGINFDL-PHVVATAPV--CEGIFHVGGDMFDA----IP-KADAVFMKWI 253 (350)
Q Consensus 184 ~~~~~~vLDvG--~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~~----~p-~~D~i~~~~v 253 (350)
.+++.+||=.| ||.|.+++.+++.. +.+++.... ++-.+.+++ .+.+--...+..+. -+ .+|+|+=.-
T Consensus 29 ~~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~v- 106 (176)
T d1xa0a2 29 TPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPV- 106 (176)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECS-
T ss_pred CCCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcC-
Confidence 45678888887 56888999999885 666666554 444444433 11111111111111 12 499877421
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEeeeecCCC
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVVQEDG 291 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~~~~~ 291 (350)
.. ..+.+..+.|+ |||+++++-.......
T Consensus 107 ----gg----~~~~~~l~~l~-~~Griv~~G~~~g~~~ 135 (176)
T d1xa0a2 107 ----GG----RTLATVLSRMR-YGGAVAVSGLTGGAEV 135 (176)
T ss_dssp ----TT----TTHHHHHHTEE-EEEEEEECSCCSSSCC
T ss_pred ----Cc----hhHHHHHHHhC-CCceEEEeecccCccc
Confidence 11 34888999999 9999998776654443
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=89.42 E-value=1.2 Score=33.53 Aligned_cols=93 Identities=14% Similarity=-0.018 Sum_probs=56.4
Q ss_pred CCCcceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEE-eccCCCC--------C-CCccEEEec
Q 018775 184 FDSIQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHV-GGDMFDA--------I-PKADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~-~~d~~~~--------~-p~~D~i~~~ 251 (350)
.+++.+||=+|+| .|..+..+++..-..++++.|. ++-.+.+++..-..++ ..+..+. . ..+|+++-.
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~ 105 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV 105 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence 6788899999886 5556677778877778999998 6666666542222222 2222111 1 148988764
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
.--. ..++.+...++ ++|..+++-.
T Consensus 106 ~G~~--------~~~~~a~~~~~-~~~g~~~~~~ 130 (176)
T d2jhfa2 106 IGRL--------DTMVTALSCCQ-EAYGVSVIVG 130 (176)
T ss_dssp SCCH--------HHHHHHHHHBC-TTTCEEEECS
T ss_pred CCch--------hHHHHHHHHHh-cCCcceEEec
Confidence 3222 34667777888 7754444443
|
| >d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Transcriptional regulator PG0396, C-terminal domain species: Porphyromonas gingivalis [TaxId: 837]
Probab=89.27 E-value=0.2 Score=32.85 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=33.8
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
-|+|-++||..+|+ ....+.|.|..|...|+++..+
T Consensus 28 ~~lt~~eLA~~~G~---sretvsr~L~~l~~~glI~~~~ 63 (81)
T d2gaua1 28 IYLSREELATLSNM---TVSNAIRTLSTFVSERMLALDG 63 (81)
T ss_dssp CCCCHHHHHHHTTS---CHHHHHHHHHHHHHTTSEEEET
T ss_pred ecCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEecC
Confidence 47899999999999 8899999999999999999886
|
| >d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Catabolite gene activator protein (CAP), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.01 E-value=0.13 Score=32.70 Aligned_cols=35 Identities=17% Similarity=0.369 Sum_probs=33.3
Q ss_pred CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 45 PITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 45 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
|+|-++||.-+|+ ..+.+.|.|+.|...|+++..+
T Consensus 29 ~lt~~~lA~~~G~---sRetvsr~L~~l~~~glI~~~~ 63 (69)
T d1i5za1 29 KITRQEIGQIVGC---SRETVGRILKMLEDQNLISAHG 63 (69)
T ss_dssp ECCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEEcC
Confidence 6899999999999 8999999999999999999886
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=88.50 E-value=0.051 Score=41.91 Aligned_cols=93 Identities=16% Similarity=0.029 Sum_probs=59.0
Q ss_pred CCCcceEEEecCCc-hHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEec--cCCCC-----CC-CccEEEecc
Q 018775 184 FDSIQSLADVGGGT-GGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGG--DMFDA-----IP-KADAVFMKW 252 (350)
Q Consensus 184 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~--d~~~~-----~p-~~D~i~~~~ 252 (350)
.+++.+||=+|||. |..+..+++..--.++++.|. ++-.+.+++ .....+... +..+. .+ .+|+++-.-
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~ 104 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG 104 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEcc
Confidence 66788888899985 888888888754447889998 666666654 111111111 11110 11 389876532
Q ss_pred hhccCChHHHHHHHHHHHhhCCCCCceEEEEee
Q 018775 253 ILHDWDDEACVKILKNCRQAIPDKSGKLVLVEI 285 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~ 285 (350)
- . ...++++.+.++ |+|+++++-.
T Consensus 105 g-----~---~~~~~~a~~~~~-~~G~iv~~G~ 128 (174)
T d1jqba2 105 G-----G---SETLSQAVKMVK-PGGIISNINY 128 (174)
T ss_dssp S-----C---TTHHHHHHHHEE-EEEEEEECCC
T ss_pred C-----C---HHHHHHHHHHHh-cCCEEEEEee
Confidence 1 1 135778889999 9999998654
|
| >d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator DR1159 species: Deinococcus radiodurans [TaxId: 1299]
Probab=88.39 E-value=0.095 Score=40.21 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=45.6
Q ss_pred cChhhhhhhCC--CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 33 LRLADIMHSHG--SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 33 lglfd~L~~~~--~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
+.++-.|...+ +++|..+||+.+++ +...+.++++.|+..|+|++.....+.-.-..++|+.+..+.
T Consensus 65 ~~vL~~L~~~~~~~~lt~~eLa~~l~i---~~~tvsr~l~~Le~~GlV~r~~~~~DrR~~~i~LT~~G~~l~ 133 (172)
T d2fbka1 65 WDLLLTLYRSAPPEGLRPTELSALAAI---SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALV 133 (172)
T ss_dssp HHHHHHHHHHCCSSCBCHHHHHHHCSC---CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHH
T ss_pred HHHHHHHHhhCCCCCcCHHHHHHHHCc---CHhHHHHHHHHHHhCCCeeeeccccchhhHHhhcCHHHHHHH
Confidence 44555554322 34899999999999 889999999999999999998632110011356777666444
|
| >d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcription factor E/IIe-alpha, N-terminal domain domain: Transcription factor E/IIe-alpha, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=88.21 E-value=0.084 Score=35.22 Aligned_cols=45 Identities=13% Similarity=0.346 Sum_probs=37.9
Q ss_pred ChhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeec
Q 018775 34 RLADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVH 81 (350)
Q Consensus 34 glfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 81 (350)
.|++.|.+.++.+|=++||+.+|+ ....+|+.|..|...|++...
T Consensus 22 ~v~~~L~~~~~evtDe~iA~~tgi---~in~VRk~Ly~L~~~~L~~y~ 66 (88)
T d1q1ha_ 22 DVLRILLDKGTEMTDEEIANQLNI---KVNDVRKKLNLLEEQGFVSYR 66 (88)
T ss_dssp HHHHHHHHHCSCBCHHHHHHTTTS---CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHhccCcCCHHHHHHHhCC---cHHHHHHHHHHHHhCCceEEE
Confidence 467766532357999999999999 899999999999999999754
|
| >d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MerB N-terminal domain-like domain: Alkylmercury lyase MerB species: Escherichia coli [TaxId: 562]
Probab=88.07 E-value=0.14 Score=31.03 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=27.5
Q ss_pred hhhhhhhCCCCCCHHHHHhhcCCCCCCcccHHHHHHHhhc
Q 018775 35 LADIMHSHGSPITLPQLASRIDSSCPDIPYLARLMRMLVR 74 (350)
Q Consensus 35 lfd~L~~~~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~ 74 (350)
|+..|.. |.|+|++.||..+|+ +...++..|..+.+
T Consensus 7 LLr~LA~-G~PVs~~~LA~alg~---~~~eV~~aL~~~p~ 42 (60)
T d1s6la1 7 LLRELAK-GRPVSRTTLAGILDW---PAERVAAVLEQATS 42 (60)
T ss_dssp HHHHHHT-TCCBCHHHHHHHHTC---CHHHHHHHHTTCCS
T ss_pred HHHHHhC-CCCcCHHHHHHHhCC---CHHHHHHHHHhCCC
Confidence 4556666 589999999999999 77777766665553
|
| >d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Fatty acid responsive transcription factor FadR, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.07 E-value=0.25 Score=31.93 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=33.6
Q ss_pred CCC-CHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPI-TLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
..+ |..+||+.+++ +..-+++-++.|+..|+|....
T Consensus 25 ~~LPs~~eLa~~~~v---Sr~tvr~Al~~L~~~G~i~~~~ 61 (74)
T d1hw1a1 25 TILPAERELSELIGV---TRTTLREVLQRLARDGWLTIQH 61 (74)
T ss_dssp SBCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCccHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEEEe
Confidence 567 78999999999 8899999999999999999997
|
| >d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Transcriptional regulator YydK species: Bacillus subtilis [TaxId: 1423]
Probab=88.00 E-value=0.32 Score=31.67 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=33.5
Q ss_pred CCC-CHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPI-TLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~-t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
..+ |..+||+.+++ +..-+++-|+.|++.|++....
T Consensus 20 ~~LPse~~La~~~~v---Sr~tvr~Al~~L~~~Gli~~~~ 56 (78)
T d3bwga1 20 DKLPVLETLMAQFEV---SKSTITKSLELLEQKGAIFQVR 56 (78)
T ss_dssp CBCCCHHHHHHHTTC---CHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCcCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEEEc
Confidence 566 78999999999 8899999999999999999987
|
| >d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: PH0730 N-terminal domain-like domain: Hypothetical protein PH0730 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.94 E-value=0.19 Score=31.87 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=40.9
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWL 101 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l 101 (350)
.|+.-..||+.+++ .++.++..++.|...|+++... ..-.+|+.+..+
T Consensus 16 qPiGRr~La~~L~l---~Er~vRte~~~Lk~~gLI~~~~-------~Gm~lTe~G~~~ 63 (69)
T d2p8ta1 16 EPLGRKQISERLEL---GEGSVRTLLRKLSHLDIIRSKQ-------RGHFLTLKGKEI 63 (69)
T ss_dssp SCBCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEC---------CEEECHHHHHH
T ss_pred CCccHHHHHHHcCC---cHHHHHHHHHHHHHCCCeeeeC-------CCCEECHhHHHH
Confidence 59999999999999 9999999999999999999997 445678777644
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.93 E-value=0.42 Score=35.84 Aligned_cols=91 Identities=16% Similarity=0.142 Sum_probs=56.1
Q ss_pred CCCcceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCC-------CCCccEEEecchh
Q 018775 184 FDSIQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDA-------IPKADAVFMKWIL 254 (350)
Q Consensus 184 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~p~~D~i~~~~vl 254 (350)
.+++.+||=+|+| .|..+..+++.. +.+++++|. ++-.+.+++..-..++..+-.+. ...+|.++....
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~- 102 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAV- 102 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCS-
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccc-
Confidence 6678888889988 667777777776 578999998 66666665421112222111110 122343333211
Q ss_pred ccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 255 HDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 255 h~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
. ...+..+.+.|+ |+|+++++-
T Consensus 103 ----~---~~~~~~~~~~l~-~~G~iv~~G 124 (166)
T d1llua2 103 ----S---NSAFGQAIGMAR-RGGTIALVG 124 (166)
T ss_dssp ----C---HHHHHHHHTTEE-EEEEEEECC
T ss_pred ----c---chHHHHHHHHhc-CCcEEEEEE
Confidence 1 235788899999 999999864
|
| >d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: C-terminal domain of RPA32 domain: C-terminal domain of RPA32 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.88 E-value=0.34 Score=30.71 Aligned_cols=45 Identities=11% Similarity=0.269 Sum_probs=38.1
Q ss_pred CCCCHHHHHhhc-CCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecCh
Q 018775 44 SPITLPQLASRI-DSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTH 96 (350)
Q Consensus 44 ~~~t~~ela~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~ 96 (350)
.+++++||++++ ++ +...++.-++.|...|++--.-. +..|+.|.
T Consensus 22 eGi~~~el~~~l~~~---~~~~i~~aid~L~~eG~IYsTiD-----ddHfkstd 67 (69)
T d1dpua_ 22 EGLNFQDLKNQLKHM---SVSSIKQAVDFLSNEGHIYSTVD-----DDHFKSTD 67 (69)
T ss_dssp TTEEHHHHHHHSTTS---CHHHHHHHHHHHHHTTSEEECSS-----TTEEEESS
T ss_pred cCcCHHHHHHHccCC---CHHHHHHHHHHHHhCCceecccc-----cchhcccC
Confidence 689999999998 78 88999999999999999987631 57787663
|
| >d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Cell cycle transcription factor e2f-dp domain: Cell cycle transcription factor E2F-4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.63 E-value=0.16 Score=31.99 Aligned_cols=37 Identities=11% Similarity=0.137 Sum_probs=33.2
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
+.+++++.|+.+++. ..+.+..+.+.|++.|++++..
T Consensus 24 ~~~~L~~aa~~L~v~--~kRRiYDI~NVLe~igli~K~~ 60 (67)
T d1cf7a_ 24 GVLDLKLAADTLAVR--QKRRIYDITNVLEGIGLIEKKS 60 (67)
T ss_dssp TEEEHHHHHHHTTTC--CTHHHHHHHHHHHHHTSEEEEE
T ss_pred CeeeHHHHHHHhcCc--chhhHHHHHHHHhhhhhhhccc
Confidence 677999999999993 3689999999999999999987
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=87.54 E-value=0.69 Score=34.54 Aligned_cols=84 Identities=11% Similarity=0.083 Sum_probs=53.8
Q ss_pred eEEEecCC--chHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCCCCCccEEEecchhccCChHHHHHH
Q 018775 189 SLADVGGG--TGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDAIPKADAVFMKWILHDWDDEACVKI 265 (350)
Q Consensus 189 ~vLDvG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~~p~~D~i~~~~vlh~~~~~~~~~~ 265 (350)
+|.=||+| -+.++..|.++ +.+++++|. ++..+.+++...+.. ..+..+.....|+|++. .|.....++
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~~~~-~~~~~~~~~~~DiIila-----vp~~~~~~v 73 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQLVDE-AGQDLSLLQTAKIIFLC-----TPIQLILPT 73 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTSCSE-EESCGGGGTTCSEEEEC-----SCHHHHHHH
T ss_pred EEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhccce-eeeeccccccccccccc-----CcHhhhhhh
Confidence 56667887 23344555543 568899998 777776654322221 12222334568999863 456778899
Q ss_pred HHHHHhhCCCCCceEE
Q 018775 266 LKNCRQAIPDKSGKLV 281 (350)
Q Consensus 266 L~~~~~~L~~pgG~ll 281 (350)
++++...++ |+..++
T Consensus 74 l~~l~~~l~-~~~iv~ 88 (165)
T d2f1ka2 74 LEKLIPHLS-PTAIVT 88 (165)
T ss_dssp HHHHGGGSC-TTCEEE
T ss_pred hhhhhhhcc-ccccee
Confidence 999999999 876443
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=87.39 E-value=0.41 Score=41.25 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=26.7
Q ss_pred CCCcceEEEecCCchHHHHHHHHHC-------CCCcEEEecc
Q 018775 184 FDSIQSLADVGGGTGGALAEIVKSY-------PHIKGINFDL 218 (350)
Q Consensus 184 ~~~~~~vLDvG~G~G~~~~~l~~~~-------p~~~~~~~D~ 218 (350)
.++..+|||+|+|.|.++..+++.. ..++++.++.
T Consensus 77 ~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~ 118 (365)
T d1zkda1 77 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEI 118 (365)
T ss_dssp CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECC
T ss_pred CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEecc
Confidence 4567789999999999998887653 2345777777
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=87.19 E-value=0.098 Score=39.79 Aligned_cols=99 Identities=13% Similarity=0.189 Sum_probs=62.5
Q ss_pred CcceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCC--CCCeEEEeccCCC---CCCCccEEEecchhccCC
Q 018775 186 SIQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPV--CEGIFHVGGDMFD---AIPKADAVFMKWILHDWD 258 (350)
Q Consensus 186 ~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~i~~~~~d~~~---~~p~~D~i~~~~vlh~~~ 258 (350)
++.+|+=||+| .|..+++.+... +.+++++|. ++.++..+. ..+++....+-.. ....+|+|+..--. |
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aali---p 106 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLV---P 106 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCC---T
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeec---C
Confidence 57899999999 566677777776 578999998 777766554 3344443322211 23469999885432 2
Q ss_pred hHHHHH-HHHHHHhhCCCCCceEEEEeeeecCCC
Q 018775 259 DEACVK-ILKNCRQAIPDKSGKLVLVEIVVQEDG 291 (350)
Q Consensus 259 ~~~~~~-~L~~~~~~L~~pgG~lli~e~~~~~~~ 291 (350)
-..+.. +=+++.+.|| ||+.+ +|...+...
T Consensus 107 G~~aP~lIt~~mv~~Mk-~GSVI--VDvaidqGG 137 (168)
T d1pjca1 107 GRRAPILVPASLVEQMR-TGSVI--VDVAVDQGG 137 (168)
T ss_dssp TSSCCCCBCHHHHTTSC-TTCEE--EETTCTTCC
T ss_pred CcccCeeecHHHHhhcC-CCcEE--EEeecCCCC
Confidence 222222 3457888999 99854 566665543
|
| >d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ReutB4095-like domain: Putative DNA-binding protein ReutB4095 species: Ralstonia eutropha [TaxId: 106590]
Probab=87.07 E-value=0.35 Score=30.83 Aligned_cols=54 Identities=26% Similarity=0.393 Sum_probs=42.0
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecccCCCCCCCeEecChhchhhh
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQSSDGGDETLYKMTHISKWLL 102 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~~~~~~~~t~~s~~l~ 102 (350)
++-|...|+++.++ +-..|||.|..|.+.|+.+..=..+ | .+.=++|+.+..++
T Consensus 23 ~~WSLaklsKra~~---PMS~LRR~LTqL~~aGl~~t~~~ed-G-~G~A~Lt~~G~~lc 76 (81)
T d2obpa1 23 TPWSLPKIAKRAQL---PMSVLRRVLTQLQAAGLADVSVEAD-G-RGHASLTQEGAALA 76 (81)
T ss_dssp CCCBHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEEEECTT-S-CEEEEECHHHHHHH
T ss_pred CCccHHHHHhhcCC---cHHHHHHHHHHHhhcCceeeeeccC-C-cceeeccHHHHHHH
Confidence 68899999999999 8899999999999999988642110 0 35667777766544
|
| >d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Heat-inducible transcription repressor HrcA, N-terminal domain domain: Heat-inducible transcription repressor HrcA, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.65 E-value=0.32 Score=32.48 Aligned_cols=40 Identities=10% Similarity=0.072 Sum_probs=34.3
Q ss_pred CCCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeeccc
Q 018775 43 GSPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQS 83 (350)
Q Consensus 43 ~~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 83 (350)
|.|++..+|++..++. .++..++..|..|...|||.+...
T Consensus 21 g~Pv~s~~i~~~~~l~-~S~aTIRn~m~~LE~~G~l~~~h~ 60 (87)
T d1stza1 21 KKPVSSQRVLEVSNIE-FSSATIRNDMKKLEYLGYIYQPHT 60 (87)
T ss_dssp CSCBCHHHHHHHSCCC-SCHHHHHHHHHHHHHTTSEECCSS
T ss_pred CCccCHHHHHHHhCCC-CCHHHHHHHHHHHHHCCcccCCCC
Confidence 4799999999997761 158899999999999999999764
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=86.45 E-value=0.8 Score=34.47 Aligned_cols=92 Identities=14% Similarity=0.098 Sum_probs=57.9
Q ss_pred CCCcceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEecc--CCC-----CCC-CccEEEecch
Q 018775 184 FDSIQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGD--MFD-----AIP-KADAVFMKWI 253 (350)
Q Consensus 184 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d--~~~-----~~p-~~D~i~~~~v 253 (350)
.+++.+||=+|+| .|..+..+++.....++++.|. ++-.+.+++..-..++..+ ..+ ..+ .+|+++-.-
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~- 108 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFV- 108 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESS-
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEec-
Confidence 4677889999998 4555677777766667888887 6656655542222223221 111 012 378777422
Q ss_pred hccCChHHHHHHHHHHHhhCCCCCceEEEEe
Q 018775 254 LHDWDDEACVKILKNCRQAIPDKSGKLVLVE 284 (350)
Q Consensus 254 lh~~~~~~~~~~L~~~~~~L~~pgG~lli~e 284 (350)
.. ...+....+.++ +||+++++-
T Consensus 109 ----g~---~~~~~~a~~~l~-~~G~iv~~G 131 (172)
T d1h2ba2 109 ----GS---QATVDYTPYLLG-RMGRLIIVG 131 (172)
T ss_dssp ----CC---HHHHHHGGGGEE-EEEEEEECC
T ss_pred ----Cc---chHHHHHHHHHh-CCCEEEEEe
Confidence 12 245888999999 999999876
|
| >d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: CO-sensing protein CooA, C-terminal domain species: Rhodospirillum rubrum [TaxId: 1085]
Probab=86.39 E-value=0.39 Score=31.31 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=33.3
Q ss_pred CCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 45 PITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 45 ~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
|+|-+|||..+|+ ..+.+.|.|..|...|+++..+
T Consensus 30 ~~t~~eiA~~lG~---sretvsr~l~~l~~~g~I~~~~ 64 (80)
T d1ft9a1 30 DFTVEEIANLIGS---SRQTTSTALNSLIKEGYISRQG 64 (80)
T ss_dssp CCCHHHHHHHHCS---CHHHHHHHHHHHHHTTSSEECS
T ss_pred CCCHHHHHHHHCC---CHHHHHHHHHHHHHCCCEEECC
Confidence 8899999999999 8999999999999999999875
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=86.01 E-value=0.43 Score=36.24 Aligned_cols=87 Identities=16% Similarity=0.185 Sum_probs=51.0
Q ss_pred ceEEEecCCchHHHHH-HHHHCCCCcEEEecc-hhHhhhCCC-------CCCeEEE------eccCCCCCCCccEEEecc
Q 018775 188 QSLADVGGGTGGALAE-IVKSYPHIKGINFDL-PHVVATAPV-------CEGIFHV------GGDMFDAIPKADAVFMKW 252 (350)
Q Consensus 188 ~~vLDvG~G~G~~~~~-l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~i~~~------~~d~~~~~p~~D~i~~~~ 252 (350)
.+|.=||+|.-..+.. .+.+ .+..++++|. ++.++..+. ....... ..|..+..+++|+|++.
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~- 79 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLAL-KGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV- 79 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC-
T ss_pred CEEEEECccHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE-
Confidence 4677789996544433 2222 3568889998 665555432 1111111 11111123568998874
Q ss_pred hhccCChHHHHHHHHHHHhhCCCCCceEE
Q 018775 253 ILHDWDDEACVKILKNCRQAIPDKSGKLV 281 (350)
Q Consensus 253 vlh~~~~~~~~~~L~~~~~~L~~pgG~ll 281 (350)
.+......+++++...++ ++..++
T Consensus 80 ----v~~~~~~~~~~~i~~~l~-~~~~iv 103 (184)
T d1bg6a2 80 ----VPAIHHASIAANIASYIS-EGQLII 103 (184)
T ss_dssp ----SCGGGHHHHHHHHGGGCC-TTCEEE
T ss_pred ----EchhHHHHHHHHhhhccC-CCCEEE
Confidence 234456788999999999 886544
|
| >d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Chlorophenol reduction protein CprK species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=85.65 E-value=0.31 Score=31.84 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=32.3
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
-|+|-++||.-+|+ ....+.|.|..|...|+++..+
T Consensus 29 ~~lt~~elA~~~g~---sretvsr~l~~l~~~glI~~~~ 64 (80)
T d3e5ua1 29 MPLSQKSIGEITGV---HHVTVSRVLASLKRENILDKKK 64 (80)
T ss_dssp SCCCHHHHHHHHTC---CHHHHHHHHHHHHHTTSEEC--
T ss_pred eCCCHHHHHHHHCC---CHHHHHHHHHHHHHCCcEEecC
Confidence 48999999999999 8899999999999999998775
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=85.40 E-value=0.83 Score=32.56 Aligned_cols=81 Identities=16% Similarity=0.154 Sum_probs=52.7
Q ss_pred CCchHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCC-------CCCccEEEecchhccCChHHHHHHH
Q 018775 195 GGTGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDA-------IPKADAVFMKWILHDWDDEACVKIL 266 (350)
Q Consensus 195 ~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~p~~D~i~~~~vlh~~~~~~~~~~L 266 (350)
||.|..+..+++.+.+..++++|. ++.++... ...+.++.||..++ ...++.+++.. . ++.+...+.
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~-~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~--~--~d~~n~~~~ 80 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVL-RSGANFVHGDPTRVSDLEKANVRGARAVIVNL--E--SDSETIHCI 80 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHH-HTTCEEEESCTTSHHHHHHTTCTTCSEEEECC--S--SHHHHHHHH
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHH-hcCccccccccCCHHHHHHhhhhcCcEEEEec--c--chhhhHHHH
Confidence 567888999999887777888887 66666554 34688999999873 23477776522 1 244444444
Q ss_pred HHHHhhCCCCCceEEE
Q 018775 267 KNCRQAIPDKSGKLVL 282 (350)
Q Consensus 267 ~~~~~~L~~pgG~lli 282 (350)
.. .+.+. |..++++
T Consensus 81 ~~-~r~~~-~~~~iia 94 (129)
T d2fy8a1 81 LG-IRKID-ESVRIIA 94 (129)
T ss_dssp HH-HHHHC-SSSCEEE
T ss_pred HH-HHHHC-CCceEEE
Confidence 44 44567 7766654
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=83.99 E-value=1.1 Score=31.89 Aligned_cols=81 Identities=15% Similarity=0.066 Sum_probs=50.9
Q ss_pred eEEEecCCchHHHHHHHHHC--CCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCC-------CCCccEEEecchhccCC
Q 018775 189 SLADVGGGTGGALAEIVKSY--PHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDA-------IPKADAVFMKWILHDWD 258 (350)
Q Consensus 189 ~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~p~~D~i~~~~vlh~~~ 258 (350)
+|+=+|+ |.++..+++.. .+..++++|. ++.++.+.+...+.++.||..++ ...+|.++.. .+
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~-----t~ 74 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAV-----TG 74 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEEC-----CS
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhccc-----CC
Confidence 5666666 55655555532 3568899998 88777665433678899999873 2348877762 22
Q ss_pred hHHHHHHHHHHHhhCCCCC
Q 018775 259 DEACVKILKNCRQAIPDKS 277 (350)
Q Consensus 259 ~~~~~~~L~~~~~~L~~pg 277 (350)
+++.-.+.....+.+. +.
T Consensus 75 ~d~~N~~~~~~~k~~~-~~ 92 (132)
T d1lssa_ 75 KEEVNLMSSLLAKSYG-IN 92 (132)
T ss_dssp CHHHHHHHHHHHHHTT-CC
T ss_pred cHHHHHHHHHHHHHcC-Cc
Confidence 3333344555666677 76
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=83.76 E-value=2.2 Score=30.23 Aligned_cols=85 Identities=13% Similarity=0.063 Sum_probs=47.4
Q ss_pred eEEEecCCchHHHHHHHHHC--CCCcEEEecc-hhHhhhCCCCCCeEEEeccCCCC-------CCCccEEEecchhccCC
Q 018775 189 SLADVGGGTGGALAEIVKSY--PHIKGINFDL-PHVVATAPVCEGIFHVGGDMFDA-------IPKADAVFMKWILHDWD 258 (350)
Q Consensus 189 ~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~i~~~~~d~~~~-------~p~~D~i~~~~vlh~~~ 258 (350)
+++=+|+| .++..+++.. -+..++++|. ++.++.++.. ...++.+|..++ ...+|.+++.. . +
T Consensus 2 ~~iIiG~G--~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~-~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~--~--~ 74 (134)
T d2hmva1 2 QFAVIGLG--RFGGSIVKELHRMGHEVLAVDINEEKVNAYASY-ATHAVIANATEENELLSLGIRNFEYVIVAI--G--A 74 (134)
T ss_dssp CEEEECCS--HHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT-CSEEEECCTTCTTHHHHHTGGGCSEEEECC--C--S
T ss_pred EEEEECCC--HHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh-CCcceeeecccchhhhccCCccccEEEEEc--C--c
Confidence 34445554 5555554432 3567889998 8888888753 345677888773 12477665522 1 1
Q ss_pred hHHHHHHHHHHHhhCCCCCceEEE
Q 018775 259 DEACVKILKNCRQAIPDKSGKLVL 282 (350)
Q Consensus 259 ~~~~~~~L~~~~~~L~~pgG~lli 282 (350)
+.....+...+++. . |..+++.
T Consensus 75 ~~~~~~~~~~~~~~-~-~~~~iia 96 (134)
T d2hmva1 75 NIQASTLTTLLLKE-L-DIPNIWV 96 (134)
T ss_dssp CHHHHHHHHHHHHH-T-TCSEEEE
T ss_pred hHHhHHHHHHHHHH-c-CCCcEEe
Confidence 23333334444444 4 4456553
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=83.38 E-value=3.3 Score=31.08 Aligned_cols=94 Identities=15% Similarity=0.012 Sum_probs=57.4
Q ss_pred CCCcceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCC-CCCeEEEeccCCCC--------CC-CccEEEec
Q 018775 184 FDSIQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPV-CEGIFHVGGDMFDA--------IP-KADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~i~~~~~d~~~~--------~p-~~D~i~~~ 251 (350)
.+++.+||=+||| .|..+..+++.+...+++++|. ++-++.+++ .....+-..|.... .+ .+|+++-.
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~ 106 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEV 106 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEEC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEe
Confidence 6788899999998 5566677777776678999998 888888776 22222211221111 12 38877653
Q ss_pred chhccCChHHHHHHHHHHHhhC-CCCCceEEEEeee
Q 018775 252 WILHDWDDEACVKILKNCRQAI-PDKSGKLVLVEIV 286 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L-~~pgG~lli~e~~ 286 (350)
.. .. ..+.+....+ + ++|+++++-..
T Consensus 107 ~g-----~~---~~~~~a~~~~~~-~~G~~v~vG~~ 133 (176)
T d1d1ta2 107 IG-----HL---ETMIDALASCHM-NYGTSVVVGVP 133 (176)
T ss_dssp SC-----CH---HHHHHHHTTSCT-TTCEEEECSCC
T ss_pred CC-----ch---HHHHHHHHHhhc-CCeEEEEEEcc
Confidence 21 11 2344544555 5 56998876543
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=82.02 E-value=3.3 Score=30.93 Aligned_cols=96 Identities=15% Similarity=-0.051 Sum_probs=58.2
Q ss_pred CCCcceEEEecCC-chHHHHHHHHHCCCCcEEEecc-hhHhhhCCCCCCeEEE---eccCCC-C-----CC-CccEEEec
Q 018775 184 FDSIQSLADVGGG-TGGALAEIVKSYPHIKGINFDL-PHVVATAPVCEGIFHV---GGDMFD-A-----IP-KADAVFMK 251 (350)
Q Consensus 184 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~i~~~---~~d~~~-~-----~p-~~D~i~~~ 251 (350)
.+++.+||=+||| .|..+..+++.....++++.|. ++-++.+++..-..++ ..|... . .+ .+|+++-.
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~ 104 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC 104 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence 6788999999998 4566667777766678999998 7777776652212222 222211 0 11 37887753
Q ss_pred chhccCChHHHHHHHHHHHhhCCCCCceEEEEeeee
Q 018775 252 WILHDWDDEACVKILKNCRQAIPDKSGKLVLVEIVV 287 (350)
Q Consensus 252 ~vlh~~~~~~~~~~L~~~~~~L~~pgG~lli~e~~~ 287 (350)
-. . ...+.+....++.++|+++++-...
T Consensus 105 ~g-----~---~~~~~~~~~~~~~~~G~~v~vG~~~ 132 (174)
T d1p0fa2 105 AG-----R---IETMMNALQSTYCGSGVTVVLGLAS 132 (174)
T ss_dssp SC-----C---HHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred CC-----C---chHHHHHHHHHHHhcCceEEEEEec
Confidence 21 1 2346666666651569988876543
|
| >d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Penicillinase repressor domain: Methicillin resistance regulatory protein MecI species: Staphylococcus aureus [TaxId: 1280]
Probab=81.31 E-value=0.24 Score=35.28 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=38.4
Q ss_pred HhcChhhhhhhCCCCCCHHHHHhhc----CCCCCCcccHHHHHHHhhcCCceeecc
Q 018775 31 VELRLADIMHSHGSPITLPQLASRI----DSSCPDIPYLARLMRMLVRKGIFAVHQ 82 (350)
Q Consensus 31 ~~lglfd~L~~~~~~~t~~ela~~~----~~~~~~~~~l~~~L~~L~~~g~l~~~~ 82 (350)
.++.|...|=+. +|+|+.||.+.+ ++ ....+..+|+-|+..|+|.+..
T Consensus 8 ~E~~VM~~lW~~-~~~t~~ei~~~l~~~~~~---~~sTv~t~L~rL~~Kg~l~r~~ 59 (120)
T d1okra_ 8 AEWEVMNIIWMK-KYASANNIIEEIQMQKDW---SPKTIRTLITRLYKKGFIDRKK 59 (120)
T ss_dssp HHHHHHHHHHHH-SSEEHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHhcccCc---cHHhHHHHHHHHHHCCCeEEEe
Confidence 345555666444 699999988877 67 7789999999999999999876
|
| >d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: Homeodomain-like family: AraC type transcriptional activator domain: MarA species: Escherichia coli [TaxId: 562]
Probab=80.58 E-value=0.69 Score=27.42 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=26.6
Q ss_pred CCCCHHHHHhhcCCCCCCcccHHHHHHHhhcCC
Q 018775 44 SPITLPQLASRIDSSCPDIPYLARLMRMLVRKG 76 (350)
Q Consensus 44 ~~~t~~ela~~~~~~~~~~~~l~~~L~~L~~~g 76 (350)
.++|+++||+.+|+ ++..+.|+.+....+.
T Consensus 18 ~~~tl~~lA~~~~~---s~~~l~r~Fk~~~g~t 47 (54)
T d1bl0a1 18 SPLSLEKVSERSGY---SKWHLQRMFKKETGHS 47 (54)
T ss_dssp SCCCCHHHHHHSSS---CHHHHHHHHHHHHSSC
T ss_pred CCCCHHHHHHHHCc---CHHHHHHHHHHHHCcC
Confidence 69999999999999 8999999998877554
|