Citrus Sinensis ID: 018784

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Protein Sequence
MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKAEEKQKIANA
Secondary Structure (PSIPRED)
cccccccEEEEEEcccccccEEEEccccccccEEEEEEccccEEEEccccccEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEcccccEEEEEEEcccccEEEEccccccEEEEEccccccccEEcccccccEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEcccccEEEEccccccEEEEEEEEEEcccccEEEEEcccEEEEEEEEEcccccEEcEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEccccccEEEEEEccccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEccccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccccEEEEEccccEEEEEEcccccEEEEEccccEEccc
Coil and Loop (DISEMBL)
mdkrkvavplvchghsrpvvdlfyspitpdgfflvsaskdsspmlrngetgdwigtfeghkgavwsccldanalfsasgsadFTAKLWDAltgdekhsfeHKHIVRACAFSEDTHLLLTGGFEKILRIFdlnrpdapprevgnssgsiRTVAWLHSDqtilssctdsggvrlwdarsgkivqtletkspvtsaevsrdgryittadgssvkfwdanhfglvkgynmpcntesaslepklgnifiaggedmwVHVFDfhtgeqigcnkghhgpvhcvrfspggesyasgsedgtiriwqtnppnheenhsgtgnaqtgklkastDEVTRKIEGfhinkegkaEEKQKIANA
Flexible Loop (DISEMBL)
mdkrkvavplvchghsrpvvdLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKivqtletkspvtsaevsrdgryittadgssvkfWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHeenhsgtgnaqtgklkasTDEVTRKIEgfhinkegkaeekqkiana
Low Complexity Region (SEG)
MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKAEEKQKIANA
Disordered region (IsUnstruct)
*****VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSA**********GETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN***************IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL*************DGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFS***********************************************************************
Disordered Region (DISOPRED)
*DKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKAE********
Disordered Region (DISEMBL)
MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA*********GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL************RDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPN********************DEVTRKIEGFHINKEG***********
Disordered Region (DISPRO)
****KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKAEEKQKI***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKAEEKQKIANA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	350	2.2.26 [Sep-21-2011]
Q54LT8	293	Serine-threonine kinase r	yes	no	0.82	0.979	0.536	6e-83
Q5XIG8	350	Serine-threonine kinase r	yes	no	0.822	0.822	0.494	3e-75
Q9Z1Z2	350	Serine-threonine kinase r	yes	no	0.822	0.822	0.494	3e-75
Q9Y3F4	350	Serine-threonine kinase r	yes	no	0.822	0.822	0.494	4e-75
Q5E959	350	Serine-threonine kinase r	yes	no	0.822	0.822	0.494	4e-75
Q5ZL33	350	Serine-threonine kinase r	yes	no	0.825	0.825	0.486	4e-74
P0CS32	341	Eukaryotic translation in	no	no	0.808	0.829	0.295	1e-30
P0CS33	341	Eukaryotic translation in	N/A	no	0.808	0.829	0.295	1e-30
Q1HPW4	329	Eukaryotic translation in	N/A	no	0.811	0.863	0.302	2e-30
Q38884	328	Eukaryotic translation in	no	no	0.811	0.865	0.301	5e-30

>sp|Q54LT8|STRAP_DICDI Serine-threonine kinase receptor-associated protein OS=Dictyostelium discoideum GN=strap PE=3 SV=1

 Score =  307 bits (787), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 156/291 (53%), Positives = 197/291 (67%), Gaps = 4/291 (1%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           PL+C GHSRPV DL +S    DG F+VSA  D SPMLRNGE GDWIGTFEGHKGAVWS  
Sbjct: 4   PLICSGHSRPVSDLSFSNENSDGSFIVSACLDGSPMLRNGENGDWIGTFEGHKGAVWSSR 63

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
            ++ A  + + SAD+T KLWD L G E  S EH+ IV+   FS +   ++TGG EKILRI
Sbjct: 64  FNSTASQALTASADYTVKLWDTLNGSEILSIEHQSIVKTADFSNNNSRVVTGGSEKILRI 123

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAW-LHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187
           FDL RP+ P  ++   + +I+T  W +H+D  +LS   D   +R+WD RSG  V +L  K
Sbjct: 124 FDLERPNDPLLQISGHTNTIKTATWSVHNDDIVLSGGLDE-VIRIWDLRSGTQV-SLCAK 181

Query: 188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247
           S +TS E S+D R++ T  G+ V FWDA  F  +K Y++P +   ASL P   + FIAGG
Sbjct: 182 SSITSMEFSKDRRFLVTTAGNEVTFWDAQSFYPLKVYSLPFDVNCASLHPD-NSKFIAGG 240

Query: 248 EDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298
            D WVHV+DF TG +I  NKGHHGPV+C RFSP G S+ASGS DGTIR+W+
Sbjct: 241 SDFWVHVYDFSTGNEIEVNKGHHGPVNCCRFSPDGASFASGSLDGTIRLWK 291

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex.
Dictyostelium discoideum (taxid: 44689)

>sp|Q5XIG8|STRAP_RAT Serine-threonine kinase receptor-associated protein OS=Rattus norvegicus GN=Strap PE=1 SV=1

 Score =  282 bits (721), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 144/291 (49%), Positives = 196/291 (67%), Gaps = 3/291 (1%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct: 7   PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
           L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV+   F++D++ LLTGG +K+LRI
Sbjct: 67  LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI 126

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
           +DLN+P+A P+E+   +  I+   W   D+ ILS+  D   VRLWD  +   V++L    
Sbjct: 127 YDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA--DDKTVRLWDHATMTEVKSLNFNM 184

Query: 189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
            V+S E   +G  +    G S+ F  A     +K +  P    SASL P+     +AGGE
Sbjct: 185 SVSSMEYIPEGEILVITYGRSIAFHSAVSLEPIKSFEAPATINSASLHPE-KEFLVAGGE 243

Query: 249 DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299
           D  ++ +D+++GE++   KGH GP+HCVRFSP GE YASGSEDGT+R+WQT
Sbjct: 244 DFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQT 294

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex. Negatively regulates TGF-beta signaling but positively regulates the PDPK1 kinase activity by enhancing its autophosphorylation and by significantly reducing the association of PDPK1 with 14-3-3 protein.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z1Z2|STRAP_MOUSE Serine-threonine kinase receptor-associated protein OS=Mus musculus GN=Strap PE=1 SV=2

 Score =  282 bits (721), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 144/291 (49%), Positives = 196/291 (67%), Gaps = 3/291 (1%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct: 7   PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
           L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV+   F++D++ LLTGG +K+LRI
Sbjct: 67  LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI 126

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
           +DLN+P+A P+E+   +  I+   W   D+ ILS+  D   VRLWD  +   V++L    
Sbjct: 127 YDLNKPEAEPKEISGHTSGIKKALWCSDDKQILSA--DDKTVRLWDHATMTEVKSLNFNM 184

Query: 189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
            V+S E   +G  +    G S+ F  A     +K +  P    SASL P+     +AGGE
Sbjct: 185 SVSSMEYIPEGEILVITYGRSIAFHSAVSLEPIKSFEAPATINSASLHPE-KEFLVAGGE 243

Query: 249 DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299
           D  ++ +D+++GE++   KGH GP+HCVRFSP GE YASGSEDGT+R+WQT
Sbjct: 244 DFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQT 294

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex. Negatively regulates TGF-beta signaling but positively regulates the PDPK1 kinase activity by enhancing its autophosphorylation and by significantly reducing the association of PDPK1 with 14-3-3 protein.

Mus musculus (taxid: 10090)

>sp|Q9Y3F4|STRAP_HUMAN Serine-threonine kinase receptor-associated protein OS=Homo sapiens GN=STRAP PE=1 SV=1

 Score =  281 bits (720), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 144/291 (49%), Positives = 196/291 (67%), Gaps = 3/291 (1%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct: 7   PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
           L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV+   F++D++ LLTGG +K+LRI
Sbjct: 67  LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI 126

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
           +DLN+P+A P+E+   +  I+   W   D+ ILS+  D   VRLWD  +   V++L    
Sbjct: 127 YDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA--DDKTVRLWDHATMTEVKSLNFNM 184

Query: 189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
            V+S E   +G  +    G S+ F  A     +K +  P    SASL P+     +AGGE
Sbjct: 185 SVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPE-KEFLVAGGE 243

Query: 249 DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299
           D  ++ +D+++GE++   KGH GP+HCVRFSP GE YASGSEDGT+R+WQT
Sbjct: 244 DFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQT 294

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex. Negatively regulates TGF-beta signaling but positively regulates the PDPK1 kinase activity by enhancing its autophosphorylation and by significantly reducing the association of PDPK1 with 14-3-3 protein.

Homo sapiens (taxid: 9606)

>sp|Q5E959|STRAP_BOVIN Serine-threonine kinase receptor-associated protein OS=Bos taurus GN=STRAP PE=2 SV=1

 Score =  281 bits (720), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 144/291 (49%), Positives = 196/291 (67%), Gaps = 3/291 (1%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct: 7   PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
           L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV+   F++D++ LLTGG +K+LRI
Sbjct: 67  LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI 126

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
           +DLN+P+A P+E+   +  I+   W   D+ ILS+  D   VRLWD  +   V++L    
Sbjct: 127 YDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA--DDKTVRLWDHATMTEVKSLNFNM 184

Query: 189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
            V+S E   +G  +    G S+ F  A     +K +  P    SASL P+     +AGGE
Sbjct: 185 SVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPE-KEFVVAGGE 243

Query: 249 DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299
           D  ++ +D+++GE++   KGH GP+HCVRFSP GE YASGSEDGT+R+WQT
Sbjct: 244 DFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQT 294

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex. Negatively regulates TGF-beta signaling but positively regulates the PDPK1 kinase activity by enhancing its autophosphorylation and by significantly reducing the association of PDPK1 with 14-3-3 protein.

Bos taurus (taxid: 9913)

>sp|Q5ZL33|STRAP_CHICK Serine-threonine kinase receptor-associated protein OS=Gallus gallus GN=STRAP PE=2 SV=2

 Score =  278 bits (711), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 142/292 (48%), Positives = 195/292 (66%), Gaps = 3/292 (1%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           PL C GH+RPVVDL +S +TP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct: 7   PLTCSGHTRPVVDLAFSGVTPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
           L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV++  F++D++ LLTGG +K+LRI
Sbjct: 67  LNKDATKAATAAADFTAKVWDAVSGDELITLAHKHIVKSVDFTQDSNYLLTGGQDKLLRI 126

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
           +DL++P+A P  V   +  I+   W   D+ ILS+  D   VRLWD  +   V+ L    
Sbjct: 127 YDLSKPEAEPDVVSGHTSGIKKALWSSDDKQILSA--DDKTVRLWDRSTMTEVKALNVAM 184

Query: 189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
            V+S E   +G+ +    G ++ F  A     +K +  P    SASL P+     +AGGE
Sbjct: 185 SVSSMEYVPEGQILVITYGKTIAFHSAETLEQIKSFEAPATINSASLHPE-KECLVAGGE 243

Query: 249 DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
           D  ++ +D++TGE++   KGH GP+HCVRFSP GE YASGSEDGT+R+WQT 
Sbjct: 244 DFKLYKYDYNTGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTT 295

The SMN complex plays an essential role in spliceosomal snRNP assembly in the cytoplasm and is required for pre-mRNA splicing in the nucleus. STRAP may play a role in the cellular distribution of the SMN complex.

Gallus gallus (taxid: 9031)

>sp|P0CS32|EIF3I_CRYNJ Eukaryotic translation initiation factor 3 subunit I OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=TIF34 PE=3 SV=1

 Score =  134 bits (337), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 157/322 (48%), Gaps = 39/322 (12%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF------EGHKG 62
           P++  GH R +  + ++    +G  L SASKDS         G+ +GT+      +GH G
Sbjct: 3   PIILQGHERSLNQIVFNS---EGDLLFSASKDSVVNAWYTSNGERLGTYGGIKGGDGHNG 59

Query: 63  AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT--- 119
           +VW+  +D+   F  +G AD   KLW+  TG+  +++E    V+  A++ED  + L+   
Sbjct: 60  SVWTVAVDSQTRFLLTGGADNAMKLWEVKTGECLYTWEFLTAVKRVAWNEDDDMFLSITE 119

Query: 120 --GGFEKILRIFDLNRPDAPPREVGNS-------SGSIRTVAWLHSDQTILSSCTDSGGV 170
              G   ++RIF +NR D  PR    +       SGS  TVA        + +  +SG +
Sbjct: 120 QRSGQPSVIRIFSINRED--PRSQSTTPITEMRLSGSRATVAIWAPLSDYIITGHESGKI 177

Query: 171 RLWDARSGKIVQTLETK--SPVTSAEVSRDGRY-ITTADGSSVKFWDANHFGLVKGYNMP 227
             +D ++G+ VQ +E +  + ++  ++S DG Y IT +   + + WD     ++K Y   
Sbjct: 178 AKYDVKTGEEVQAVEDEHSALISDIQLSPDGTYFITASKDKTARLWDIETLEVMKVYTTE 237

Query: 228 CNTESASLEPKLGNIFIAGGED-MWVHVFDFHTG------------EQIGCNKGHHGPVH 274
               SA + P    I + GG+D M V       G            E++G  KGH GP++
Sbjct: 238 TPVNSAVITPDRPYIILGGGQDAMNVTTTSQRAGKFESRFFHKLFEEEVGRVKGHFGPIN 297

Query: 275 CVRFSPGGESYASGSEDGTIRI 296
            +   P G +YASG+EDG +R+
Sbjct: 298 TLSVHPQGRAYASGAEDGFVRV 319

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CS33|EIF3I_CRYNB Eukaryotic translation initiation factor 3 subunit I OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=TIF34 PE=3 SV=1

 Score =  134 bits (337), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 157/322 (48%), Gaps = 39/322 (12%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF------EGHKG 62
           P++  GH R +  + ++    +G  L SASKDS         G+ +GT+      +GH G
Sbjct: 3   PIILQGHERSLNQIVFNS---EGDLLFSASKDSVVNAWYTSNGERLGTYGGIKGGDGHNG 59

Query: 63  AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT--- 119
           +VW+  +D+   F  +G AD   KLW+  TG+  +++E    V+  A++ED  + L+   
Sbjct: 60  SVWTVAVDSQTRFLLTGGADNAMKLWEVKTGECLYTWEFLTAVKRVAWNEDDDMFLSITE 119

Query: 120 --GGFEKILRIFDLNRPDAPPREVGNS-------SGSIRTVAWLHSDQTILSSCTDSGGV 170
              G   ++RIF +NR D  PR    +       SGS  TVA        + +  +SG +
Sbjct: 120 QRSGQPSVIRIFSINRED--PRSQSTTPITEMRLSGSRATVAIWAPLSDYIITGHESGKI 177

Query: 171 RLWDARSGKIVQTLETK--SPVTSAEVSRDGRY-ITTADGSSVKFWDANHFGLVKGYNMP 227
             +D ++G+ VQ +E +  + ++  ++S DG Y IT +   + + WD     ++K Y   
Sbjct: 178 AKYDVKTGEEVQAVEDEHSALISDIQLSPDGTYFITASKDKTARLWDIETLEVMKVYTTE 237

Query: 228 CNTESASLEPKLGNIFIAGGED-MWVHVFDFHTG------------EQIGCNKGHHGPVH 274
               SA + P    I + GG+D M V       G            E++G  KGH GP++
Sbjct: 238 TPVNSAVITPDRPYIILGGGQDAMNVTTTSQRAGKFESRFFHKLFEEEVGRVKGHFGPIN 297

Query: 275 CVRFSPGGESYASGSEDGTIRI 296
            +   P G +YASG+EDG +R+
Sbjct: 298 TLSVHPQGRAYASGAEDGFVRV 319

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q1HPW4|EIF3I_BOMMO Eukaryotic translation initiation factor 3 subunit I OS=Bombyx mori PE=2 SV=1

 Score =  133 bits (335), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 154/314 (49%), Gaps = 30/314 (9%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           PL+  GH R +  + Y+    +G  L SA+KDS P +     G+ +GTF GH G +W   
Sbjct: 3   PLMLQGHQRAITQIKYNR---EGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLD 59

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKI--- 125
           +D  ++   +G  D + +LWD  TG    + +    VR C FS   +       + +   
Sbjct: 60  VDWQSINLITGGGDSSCRLWDLETGKNIATLKSNSSVRTCNFSYSAYQAAYTTDKAMGHP 119

Query: 126 --LRIFDLNRPD------APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
             + + D    D      AP  +   +   + ++ W   D+TI++   ++G +  WD R+
Sbjct: 120 CEVFVIDTRTIDETVSGQAPILKWEITDSKVTSMIWGSLDETIITG-HEAGDLIQWDLRT 178

Query: 178 GKIVQTL-ETKSPVTSAEVSRDG-RYITTADGSSVKFWDANHFGLVKGYNMPCNTESASL 235
           GK + ++ E    +T  ++SRDG  ++T +   + K +D N   L+K Y       SA+L
Sbjct: 179 GKKIHSVKEHTHQITDMQLSRDGTMFVTASKDHTAKLFDTNSLELLKEYKTERPVNSAAL 238

Query: 236 EPKLGNIFIAGGED-MWVHV-------FD---FHT--GEQIGCNKGHHGPVHCVRFSPGG 282
            P L ++ + GG+D M V         FD   FH    E+ G  KGH GP++ + F P G
Sbjct: 239 SPILDHVVLGGGQDAMEVTTTSTRQGKFDARFFHLVFEEEFGRVKGHFGPINSLAFHPDG 298

Query: 283 ESYASGSEDGTIRI 296
           +SYASG EDG +R+
Sbjct: 299 KSYASGGEDGYVRV 312

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Bombyx mori (taxid: 7091)

>sp|Q38884|EIF3I_ARATH Eukaryotic translation initiation factor 3 subunit I OS=Arabidopsis thaliana GN=TIF3I1 PE=2 SV=2

 Score =  132 bits (331), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 151/318 (47%), Gaps = 34/318 (10%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           P++  GH RP+  L Y+    +G  L S +KD +P L   + G+ +GT+ GH GAVW C 
Sbjct: 3   PILMKGHERPLTFLRYNR---EGDLLFSCAKDHTPTLWFADNGERLGTYRGHNGAVWCCD 59

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL--LLTGGFEKIL 126
           +  ++    +GSAD TAKLWD  +G E  +F+     R+  F+    L  + T  F    
Sbjct: 60  VSRDSSRLITGSADQTAKLWDVKSGKELFTFKFNAPTRSVDFAVGDRLAVITTDHFVDRT 119

Query: 127 RIFDLNRPDAPPREVGNSS----------GSIRTVAWLHSDQTILSSCTDSGGVRLWDAR 176
               + R    P E    S            I    W   +QTI+S   D   +R+WDA 
Sbjct: 120 AAIHVKRIAEDPEEQDAESVLVLHCPDGKKRINRAVWGPLNQTIVSGGEDK-VIRIWDAE 178

Query: 177 SGKIVQTLET----KSPVTS-AEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTE 231
           +GK+++  +     K  +TS  + + D  ++T +   + K WD     L+K Y       
Sbjct: 179 TGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWDMRTLTLLKTYTTVVPVN 238

Query: 232 SASLEPKLGNIFIAGGED-------------MWVHVFDFHTGEQIGCNKGHHGPVHCVRF 278
           + SL P L ++ + GG+D                  +D    E+IG  KGH GP++ + F
Sbjct: 239 AVSLSPLLNHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAF 298

Query: 279 SPGGESYASGSEDGTIRI 296
           +P G+S++SG EDG +R+
Sbjct: 299 NPDGKSFSSGGEDGYVRL 316

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
224070853	350	predicted protein [Populus trichocarpa]	1.0	1.0	0.86	1e-179
224054150	350	predicted protein [Populus trichocarpa]	1.0	1.0	0.857	1e-179
225442803	346	PREDICTED: serine-threonine kinase recep	0.977	0.988	0.843	1e-173
255553039	336	serine-threonine kinase receptor-associa	0.931	0.970	0.870	1e-170
449521643	353	PREDICTED: serine-threonine kinase recep	0.988	0.980	0.815	1e-170
255576966	350	serine-threonine kinase receptor-associa	0.997	0.997	0.819	1e-170
225445396	348	PREDICTED: serine-threonine kinase recep	0.994	1.0	0.833	1e-170
449457113	353	PREDICTED: serine-threonine kinase recep	0.988	0.980	0.812	1e-170
356511630	352	PREDICTED: serine-threonine kinase recep	0.988	0.982	0.803	1e-169
255645914	352	unknown [Glycine max]	0.988	0.982	0.800	1e-168

>gi|224070853|ref|XP_002303265.1| predicted protein [Populus trichocarpa] gi|222840697|gb|EEE78244.1| predicted protein [Populus trichocarpa]

 Score =  632 bits (1631), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 301/350 (86%), Positives = 320/350 (91%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           MDK+KVAVPLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDSSPMLRNGETGDWIGTFEGH
Sbjct: 1   MDKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSCCLD +AL +ASGSADF+AKLWDALTGDE HSFEHKHIVRAC FSEDTHLLLTG
Sbjct: 61  KGAVWSCCLDTSALRAASGSADFSAKLWDALTGDELHSFEHKHIVRACTFSEDTHLLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EKILRIFDLNRPDAPPREV NS GSIRTVAWLHSDQTILSSCTD GGVRLWD RSGKI
Sbjct: 121 GVEKILRIFDLNRPDAPPREVDNSPGSIRTVAWLHSDQTILSSCTDIGGVRLWDVRSGKI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLETKSPVTSAEVSRDGRYITTADGS+VKFWDANHFGLVK Y+MPCN ESASLEPKLG
Sbjct: 181 VQTLETKSPVTSAEVSRDGRYITTADGSTVKFWDANHFGLVKSYDMPCNVESASLEPKLG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
           N F+AGGEDMW+HVFDFHTGEQIGCNKGHHGPVHC+RFSPGGESYASGSEDGTIRIWQ  
Sbjct: 241 NKFVAGGEDMWIHVFDFHTGEQIGCNKGHHGPVHCLRFSPGGESYASGSEDGTIRIWQLG 300

Query: 301 PPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKAEEKQKIANA 350
           P  H+EN S  GN  TGK++ S D+V +KIEGFHI+ EGK  EK+   +A
Sbjct: 301 PAIHDENDSVPGNGPTGKVEVSADDVAQKIEGFHISGEGKTTEKENATDA 350

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054150|ref|XP_002298116.1| predicted protein [Populus trichocarpa] gi|222845374|gb|EEE82921.1| predicted protein [Populus trichocarpa]

 Score =  632 bits (1629), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 300/350 (85%), Positives = 319/350 (91%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           MDK+KVAVPLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDSSPMLRNGETGDWIGTFEGH
Sbjct: 1   MDKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSCCLD NAL +ASGSADF+AKLWDALTGDE  SFEHKHIVRACAFSEDTHLLLTG
Sbjct: 61  KGAVWSCCLDTNALRAASGSADFSAKLWDALTGDELQSFEHKHIVRACAFSEDTHLLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           GFEKILRIFDLNRPDAPPREV NS GSIRTVAWLHSDQTILSSC D GGVRLWD RSGKI
Sbjct: 121 GFEKILRIFDLNRPDAPPREVDNSPGSIRTVAWLHSDQTILSSCADIGGVRLWDIRSGKI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLETKSPVTSAEVS+DGRYITTADGS+VKFWDANHFGLVK Y+MPCN ESASLEPK G
Sbjct: 181 VQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYDMPCNVESASLEPKFG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
           N F+AGGEDMW+HVFDFHTGEQIGCNKGHHGPVHC+RFSPGGESYASGSEDGTIRIWQ +
Sbjct: 241 NKFVAGGEDMWIHVFDFHTGEQIGCNKGHHGPVHCLRFSPGGESYASGSEDGTIRIWQLS 300

Query: 301 PPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKAEEKQKIANA 350
           P +H+EN S  GN  TGK+K S D+V +KIE   I+KEGK  EK K  +A
Sbjct: 301 PASHDENDSLPGNGPTGKVKVSADDVAQKIEVLRISKEGKTAEKDKATDA 350

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442803|ref|XP_002285272.1| PREDICTED: serine-threonine kinase receptor-associated protein [Vitis vinifera] gi|297743376|emb|CBI36243.3| unnamed protein product [Vitis vinifera]

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 292/346 (84%), Positives = 314/346 (90%), Gaps = 4/346 (1%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           MDK+KVAVPLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDS+PMLRNGETGDWIGTFEGH
Sbjct: 1   MDKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSTPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSC LD NAL +ASGSADFTAKLWDALTGDE HSFEHKHIVRACAFSEDTH LLTG
Sbjct: 61  KGAVWSCSLDTNALRAASGSADFTAKLWDALTGDELHSFEHKHIVRACAFSEDTHFLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EK+LRIFDLNRPDAPPREV NS GSIRTVAWLHSDQTILSSCTD+GGVRLWD R+GKI
Sbjct: 121 GVEKVLRIFDLNRPDAPPREVENSPGSIRTVAWLHSDQTILSSCTDNGGVRLWDVRTGKI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           V TLETKSPVTSAEVS+DGRYITTADG++VKFWDANH+GLVK YNMPCN ESASLEPK G
Sbjct: 181 VHTLETKSPVTSAEVSQDGRYITTADGTTVKFWDANHYGLVKSYNMPCNMESASLEPKFG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
           N FIAGGEDMW+H+FDF+TGE+IGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 
Sbjct: 241 NKFIAGGEDMWIHMFDFNTGEEIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTG 300

Query: 301 PPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKAEEKQK 346
           P N EE  S      +GK+K   DEVTRK+EGFH+ K+GK   K+K
Sbjct: 301 PQNLEEPDSFV----SGKVKVVVDEVTRKVEGFHVGKDGKTGNKEK 342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553039|ref|XP_002517562.1| serine-threonine kinase receptor-associated protein, putative [Ricinus communis] gi|223543194|gb|EEF44726.1| serine-threonine kinase receptor-associated protein, putative [Ricinus communis]

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 289/332 (87%), Positives = 305/332 (91%), Gaps = 6/332 (1%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           MDK+KVAVPLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDSSPMLRNGETGDWIGTFEGH
Sbjct: 1   MDKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSC LD  AL +AS SADFTAKLWDALTGDE HSFEH+HIVRACAFSEDTHLLLTG
Sbjct: 61  KGAVWSCSLDTKALRAASASADFTAKLWDALTGDELHSFEHRHIVRACAFSEDTHLLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EKILR+FDLNRPDAPPREV +S GSIRTVAWLHSDQTILSSCTD GGVRLWD RSGKI
Sbjct: 121 GMEKILRLFDLNRPDAPPREVNSSPGSIRTVAWLHSDQTILSSCTDMGGVRLWDIRSGKI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLETKSPVTSAEVS+DGRYITTADGS+VKFWDANHFGLVK YNMPCN ESASLEPKLG
Sbjct: 181 VQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCNVESASLEPKLG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
           N F+AGGEDMW+HVFDFHTGEQIGCNKGHHGPVHC+RFSPGGESYASGSEDGTIRIWQT 
Sbjct: 241 NKFVAGGEDMWIHVFDFHTGEQIGCNKGHHGPVHCLRFSPGGESYASGSEDGTIRIWQTG 300

Query: 301 PPNHEENHSGTGNAQTGKLKASTDEVTRKIEG 332
           P NH+E      N  TGK  AS D+VT+KI+G
Sbjct: 301 PQNHDE------NGPTGKAMASADDVTQKIKG 326

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449521643|ref|XP_004167839.1| PREDICTED: serine-threonine kinase receptor-associated protein-like [Cucumis sativus]

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 283/347 (81%), Positives = 312/347 (89%), Gaps = 1/347 (0%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           MDK++VA+PLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDS+PMLRNGETGDWIGTFEGH
Sbjct: 1   MDKKRVAIPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSNPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSCCLD NAL +A+GSADF+AK+WDALTGD  HSFEHKHIVRAC+FSEDTHLLLTG
Sbjct: 61  KGAVWSCCLDTNALRAATGSADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EK+LRI+DLNRPDAPPREV  S GS+RTV WLHSDQTILSSCTD GGVRLWD RSG+I
Sbjct: 121 GLEKVLRIYDLNRPDAPPREVDKSPGSVRTVTWLHSDQTILSSCTDMGGVRLWDVRSGQI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLETKS VTSAEVS+DGRYITTADGS+VKFWDANHFGLVK YNMPC  ESASLEPK G
Sbjct: 181 VQTLETKSSVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTVESASLEPKYG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
             FIAGGEDMW+HVFDFHTG++I CNKGHHGPVHC+RF+PGGESYASGSEDGTIRIWQT 
Sbjct: 241 MKFIAGGEDMWIHVFDFHTGDEIACNKGHHGPVHCLRFAPGGESYASGSEDGTIRIWQTG 300

Query: 301 PPNHEE-NHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKAEEKQK 346
           P  H++ + S   N   GK+K S DEV+RKIEGF+I  EGKA EK+K
Sbjct: 301 PLTHDDSDESALVNGSIGKVKVSADEVSRKIEGFNIADEGKAREKEK 347

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576966|ref|XP_002529368.1| serine-threonine kinase receptor-associated protein, putative [Ricinus communis] gi|223531188|gb|EEF33035.1| serine-threonine kinase receptor-associated protein, putative [Ricinus communis]

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 286/349 (81%), Positives = 309/349 (88%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           MDK++VAVPLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDSSPMLRNGETGDWIGTFEGH
Sbjct: 1   MDKKRVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSCCLD NAL +ASGSADFTAK+WDALTGD  HSFEHKHIVRA AFSEDTHLLLTG
Sbjct: 61  KGAVWSCCLDTNALRAASGSADFTAKVWDALTGDVLHSFEHKHIVRASAFSEDTHLLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EK+LRIFDLNRPDAPPREV  S GS+RTVAWLHSDQTILSSCTD GGVRLWD RSGKI
Sbjct: 121 GIEKVLRIFDLNRPDAPPREVDKSPGSVRTVAWLHSDQTILSSCTDMGGVRLWDVRSGKI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLETKS VTSAEVS+DGRYITT DGS+VKFWDANHFGLVK Y+MPC  ESASLEPK G
Sbjct: 181 VQTLETKSSVTSAEVSQDGRYITTCDGSTVKFWDANHFGLVKSYDMPCTVESASLEPKYG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
           N FIAGGEDMW+HVFDFHTG++I CNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 
Sbjct: 241 NKFIAGGEDMWIHVFDFHTGDEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTG 300

Query: 301 PPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKAEEKQKIAN 349
           P   ++      N   GK+K + +EVT KIEGFHI   GKA++K++ A 
Sbjct: 301 PLIQDDTEGLAANGSVGKVKVTAEEVTHKIEGFHIADGGKAKDKEEAAK 349

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445396|ref|XP_002284993.1| PREDICTED: serine-threonine kinase receptor-associated protein [Vitis vinifera] gi|297738901|emb|CBI28146.3| unnamed protein product [Vitis vinifera]

 Score =  605 bits (1559), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 290/348 (83%), Positives = 308/348 (88%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           M+K++VAVPLVCHGHSRPVVDLFYSPITPDGFFL+SASKDSSPMLRNGETGDWIGTFEGH
Sbjct: 1   MEKKRVAVPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSCCLD NAL +ASGSADFTAK+WDALTGDE HSFEHKHIVRACAFSEDTH LLTG
Sbjct: 61  KGAVWSCCLDTNALRAASGSADFTAKIWDALTGDELHSFEHKHIVRACAFSEDTHSLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EKILRIFDLNRPDAPPREV NS GS+RTVAWLHSDQTILSSCTD GGVRLWD RSGKI
Sbjct: 121 GVEKILRIFDLNRPDAPPREVDNSPGSVRTVAWLHSDQTILSSCTDIGGVRLWDVRSGKI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLET S VTSAEVS+DGRYI TADGSSVKFWDANHFGLVK Y MPC  ESASLEPK G
Sbjct: 181 VQTLETNSSVTSAEVSQDGRYIITADGSSVKFWDANHFGLVKSYKMPCTVESASLEPKNG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
           + FIAGGEDMW+ +FDFHTGE+I CNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 
Sbjct: 241 DKFIAGGEDMWIRLFDFHTGEEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTG 300

Query: 301 PPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKAEEKQKIA 348
           P  H+ N     N  TGK+K + +EV+ KIEGFHI  EGKA E+   A
Sbjct: 301 PLTHDNNEMFRANGLTGKVKVAAEEVSCKIEGFHIADEGKAGEEAGTA 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457113|ref|XP_004146293.1| PREDICTED: serine-threonine kinase receptor-associated protein-like [Cucumis sativus]

 Score =  603 bits (1554), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 282/347 (81%), Positives = 311/347 (89%), Gaps = 1/347 (0%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           MDK++VA+PLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDS+PMLRNGE GDWIGTFEGH
Sbjct: 1   MDKKRVAIPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSNPMLRNGENGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSCCLD NAL +A+GSADF+AK+WDALTGD  HSFEHKHIVRAC+FSEDTHLLLTG
Sbjct: 61  KGAVWSCCLDTNALRAATGSADFSAKVWDALTGDVLHSFEHKHIVRACSFSEDTHLLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EK+LRI+DLNRPDAPPREV  S GS+RTV WLHSDQTILSSCTD GGVRLWD RSG+I
Sbjct: 121 GLEKVLRIYDLNRPDAPPREVDKSPGSVRTVTWLHSDQTILSSCTDMGGVRLWDVRSGQI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLETKS VTSAEVS+DGRYITTADGS+VKFWDANHFGLVK YNMPC  ESASLEPK G
Sbjct: 181 VQTLETKSSVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYNMPCTVESASLEPKYG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
             FIAGGEDMW+HVFDFHTG++I CNKGHHGPVHC+RF+PGGESYASGSEDGTIRIWQT 
Sbjct: 241 MKFIAGGEDMWIHVFDFHTGDEIACNKGHHGPVHCLRFAPGGESYASGSEDGTIRIWQTG 300

Query: 301 PPNHEE-NHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKAEEKQK 346
           P  H++ + S   N   GK+K S DEV+RKIEGF+I  EGKA EK+K
Sbjct: 301 PLTHDDSDESALVNGSIGKVKVSADEVSRKIEGFNIADEGKAREKEK 347

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511630|ref|XP_003524526.1| PREDICTED: serine-threonine kinase receptor-associated protein-like [Glycine max]

 Score =  598 bits (1543), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 278/346 (80%), Positives = 308/346 (89%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           M+K+KVAVPLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDSSPMLRNGETGDWIGTFEGH
Sbjct: 1   MEKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSCCLD +AL +A+ SADF+ K+WDALTGDE HSFEHKHIVRACAFSEDTHLLLTG
Sbjct: 61  KGAVWSCCLDTSALRAATASADFSTKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EKILRI+D+NRPDAPPREV  S GS+RTVAWLHSDQTILSSCTD GGVRLWD RSGKI
Sbjct: 121 GVEKILRIYDMNRPDAPPREVDKSPGSVRTVAWLHSDQTILSSCTDMGGVRLWDVRSGKI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLETKS VTSAEVS+DGRYITTADGS+VKFWDAN++GLVK Y+MPC  ES SLEPK G
Sbjct: 181 VQTLETKSSVTSAEVSQDGRYITTADGSTVKFWDANYYGLVKSYDMPCTVESVSLEPKYG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
           N F+AGGEDMWV VFDFHTG +I CNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 
Sbjct: 241 NKFVAGGEDMWVRVFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTG 300

Query: 301 PPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKAEEKQK 346
           P   +++ + + N    K+K + DEV+RKIEGF I  EGK++EK +
Sbjct: 301 PLTLDDSETVSANGSVDKVKETADEVSRKIEGFQIADEGKSKEKDE 346

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645914|gb|ACU23446.1| unknown [Glycine max]

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 277/346 (80%), Positives = 307/346 (88%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           M+K+KVAVPLVCHGHSRPVVDLFYSP+TPDGFFL+SASKDSSPMLRNGETGDWIGTFEGH
Sbjct: 1   MEKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGH 60

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           KGAVWSCCLD +AL +A+ SADF+ K+WDALTGDE HSFEHKHIVRACAFSEDTHLLLTG
Sbjct: 61  KGAVWSCCLDTSALRAATASADFSTKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTG 120

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
           G EKILRI+D+NRPDAPPREV  S GS+RTVAWLHSDQ ILSSCTD GGVRLWD RSGKI
Sbjct: 121 GVEKILRIYDMNRPDAPPREVDKSPGSVRTVAWLHSDQAILSSCTDMGGVRLWDVRSGKI 180

Query: 181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
           VQTLETKS VTSAEVS+DGRYITTADGS+VKFWDAN++GLVK Y+MPC  ES SLEPK G
Sbjct: 181 VQTLETKSSVTSAEVSQDGRYITTADGSTVKFWDANYYGLVKSYDMPCTVESVSLEPKYG 240

Query: 241 NIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
           N F+AGGEDMWV VFDFHTG +I CNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 
Sbjct: 241 NKFVAGGEDMWVRVFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTG 300

Query: 301 PPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKAEEKQK 346
           P   +++ + + N    K+K + DEV+RKIEGF I  EGK++EK +
Sbjct: 301 PLTLDDSETVSANGSVDKVKETADEVSRKIEGFQIADEGKSKEKDE 346

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
TAIR|locus:2093182	341	AT3G15610 "AT3G15610" [Arabido	0.962	0.988	0.816	4.4e-155
TAIR|locus:2035179	343	AT1G52730 "AT1G52730" [Arabido	0.968	0.988	0.813	9.2e-155
TAIR|locus:2037818	333	AT1G15470 "AT1G15470" [Arabido	0.951	1.0	0.775	6.6e-145
DICTYBASE|DDB_G0286457	293	strap "putative serine-threoni	0.82	0.979	0.536	3.7e-80
ZFIN|ZDB-GENE-040426-1110	329	strap "serine/threonine kinase	0.825	0.878	0.505	7.6e-80
FB|FBgn0034876	328	wmd "wing morphogenesis defect	0.828	0.884	0.506	9.7e-80
UNIPROTKB|E2RBU1	350	STRAP "Uncharacterized protein	0.822	0.822	0.494	1.1e-76
UNIPROTKB|Q9Y3F4	350	STRAP "Serine-threonine kinase	0.822	0.822	0.494	1.1e-76
UNIPROTKB|Q5E959	350	STRAP "Serine-threonine kinase	0.822	0.822	0.494	1.5e-76
MGI|MGI:1329037	350	Strap "serine/threonine kinase	0.822	0.822	0.494	1.5e-76

TAIR|locus:2093182 AT3G15610 "AT3G15610" [Arabidopsis thaliana (taxid:3702)]

 Score = 1512 (537.3 bits), Expect = 4.4e-155, P = 4.4e-155
 Identities = 281/344 (81%), Positives = 299/344 (86%)

Query:     1 MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
             M+K+KVA PLVCHGHSRPVVDLFYSPITPDGFFL+SASKDS PMLRNGETGDWIGTFEGH
Sbjct:     1 MEKKKVATPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSQPMLRNGETGDWIGTFEGH 60

Query:    61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
             KGAVWS CLD NAL +AS SADF+AKLWDALTGD  HSFEHKHIVRACAFS+DT  L+TG
Sbjct:    61 KGAVWSSCLDNNALRAASASADFSAKLWDALTGDVLHSFEHKHIVRACAFSQDTKYLITG 120

Query:   121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
             GFEKILR+FDLNR DAPP E+  S GSIRT+ WLH DQTILSSCTD GGVRLWD RSGKI
Sbjct:   121 GFEKILRVFDLNRLDAPPTEIDKSPGSIRTLTWLHGDQTILSSCTDIGGVRLWDVRSGKI 180

Query:   181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
             VQTLETKSPVTSAEVS+DGRYITTADGS+VKFWDANHFGLVK Y+MPCN ESASLEPK G
Sbjct:   181 VQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYDMPCNIESASLEPKSG 240

Query:   241 NIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
             N F+AGGEDMWV +FDFHTG++IGCNKGHHGPVHCVRF+P GESYASGSEDGTIRIWQT 
Sbjct:   241 NKFVAGGEDMWVRLFDFHTGKEIGCNKGHHGPVHCVRFAPTGESYASGSEDGTIRIWQTG 300

Query:   301 PPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKAEEK 344
             P N EE           K K S DEV RKIEGFHINKEGK  EK
Sbjct:   301 PVNPEE-------ISESKPKQSVDEVARKIEGFHINKEGKTAEK 337

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2035179 AT1G52730 "AT1G52730" [Arabidopsis thaliana (taxid:3702)]

 Score = 1509 (536.3 bits), Expect = 9.2e-155, P = 9.2e-155
 Identities = 280/344 (81%), Positives = 302/344 (87%)

Query:     1 MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
             M+K+KV +P VCHGHSRPVVDLFYSPITPDGFFL+SASKDS PMLRNGETGDWIGTFEGH
Sbjct:     1 MEKKKVTIPQVCHGHSRPVVDLFYSPITPDGFFLISASKDSHPMLRNGETGDWIGTFEGH 60

Query:    61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
             KGAVWS CLD NAL +AS SADF+AKLWDALTGD  HSFEHKHIVRACAFSEDT  LLTG
Sbjct:    61 KGAVWSSCLDNNALRAASASADFSAKLWDALTGDVLHSFEHKHIVRACAFSEDTKSLLTG 120

Query:   121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
             GFEKILR+FD+NR DAPP EV  S GSIRT+ WLHSDQTILSSCTD GGVRLWD RSGKI
Sbjct:   121 GFEKILRVFDMNRLDAPPTEVDKSPGSIRTLTWLHSDQTILSSCTDIGGVRLWDVRSGKI 180

Query:   181 VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG 240
             VQTLETKSPVTSAEVS+DGRYITTADGS+VKFWDANHFGLVK Y+MPCN ESASLEPK G
Sbjct:   181 VQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYDMPCNIESASLEPKSG 240

Query:   241 NIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
               F+AGGEDMWV VFDF+TGE+IGCNKGHHGPVHCVRF+P G SYASGSEDGTIRIWQT 
Sbjct:   241 EKFVAGGEDMWVRVFDFYTGEEIGCNKGHHGPVHCVRFTPTGLSYASGSEDGTIRIWQTT 300

Query:   301 PPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKAEEK 344
             P N EEN + +      ++K S DEV++KIEGFHINKEGK  EK
Sbjct:   301 PANPEENETSSR-----RVKHSVDEVSKKIEGFHINKEGKTAEK 339

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2037818 AT1G15470 "AT1G15470" [Arabidopsis thaliana (taxid:3702)]

 Score = 1416 (503.5 bits), Expect = 6.6e-145, P = 6.6e-145
 Identities = 263/339 (77%), Positives = 290/339 (85%)

Query:     6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVW 65
             +  PLVCHGHSRPVVD+ YSP+TPDGFFL+SASKDS+PMLRNGETGDWIGTFEGHKGAVW
Sbjct:     1 MGAPLVCHGHSRPVVDVAYSPVTPDGFFLISASKDSNPMLRNGETGDWIGTFEGHKGAVW 60

Query:    66 SCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKI 125
             SC LD NA+ +AS SADFTAK+W+ALTGDE HSFEHKHIVRACAFSEDTH LLTGG EKI
Sbjct:    61 SCSLDKNAIRAASASADFTAKIWNALTGDELHSFEHKHIVRACAFSEDTHRLLTGGMEKI 120

Query:   126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE 185
             LRIFDLNRPDAPP+EVGNS GSIRTV WLHSD TILSSCTD+G +RLWD RS KIV TLE
Sbjct:   121 LRIFDLNRPDAPPKEVGNSPGSIRTVEWLHSDNTILSSCTDTGDIRLWDIRSDKIVHTLE 180

Query:   186 TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
             TKSPVTSAEVS+DGRYITTADGSSVKFWDA +FGL+K Y+MPCN ESASLEPK GN FIA
Sbjct:   181 TKSPVTSAEVSQDGRYITTADGSSVKFWDAKNFGLLKSYDMPCNVESASLEPKHGNTFIA 240

Query:   246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
             GGEDMWVH FDF TGE+IGCNKGHHGPVHCVR++PGGESY SGSEDGT+RIW     NH 
Sbjct:   241 GGEDMWVHRFDFQTGEEIGCNKGHHGPVHCVRYAPGGESYTSGSEDGTVRIWVVGSVNHP 300

Query:   306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKAEEK 344
             E  + +G+    KL A  +EV RK E   I+++  AE K
Sbjct:   301 EESNLSGHV---KLVA--EEVVRKAESLRISEKA-AEAK 333

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

DICTYBASE|DDB_G0286457 strap "putative serine-threonine kinase receptor-associated protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
 Identities = 156/291 (53%), Positives = 197/291 (67%)

Query:     9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
             PL+C GHSRPV DL +S    DG F+VSA  D SPMLRNGE GDWIGTFEGHKGAVWS  
Sbjct:     4 PLICSGHSRPVSDLSFSNENSDGSFIVSACLDGSPMLRNGENGDWIGTFEGHKGAVWSSR 63

Query:    69 LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
              ++ A  + + SAD+T KLWD L G E  S EH+ IV+   FS +   ++TGG EKILRI
Sbjct:    64 FNSTASQALTASADYTVKLWDTLNGSEILSIEHQSIVKTADFSNNNSRVVTGGSEKILRI 123

Query:   129 FDLNRPDAPPREVGNSSGSIRTVAW-LHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187
             FDL RP+ P  ++   + +I+T  W +H+D  +LS   D   +R+WD RSG  V +L  K
Sbjct:   124 FDLERPNDPLLQISGHTNTIKTATWSVHNDDIVLSGGLDEV-IRIWDLRSGTQV-SLCAK 181

Query:   188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247
             S +TS E S+D R++ T  G+ V FWDA  F  +K Y++P +   ASL P   + FIAGG
Sbjct:   182 SSITSMEFSKDRRFLVTTAGNEVTFWDAQSFYPLKVYSLPFDVNCASLHPD-NSKFIAGG 240

Query:   248 EDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298
              D WVHV+DF TG +I  NKGHHGPV+C RFSP G S+ASGS DGTIR+W+
Sbjct:   241 SDFWVHVYDFSTGNEIEVNKGHHGPVNCCRFSPDGASFASGSLDGTIRLWK 291

GO:0005575 "cellular_component" evidence=ND

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=ISS

ZFIN|ZDB-GENE-040426-1110 strap "serine/threonine kinase receptor associated protein" [Danio rerio (taxid:7955)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 147/291 (50%), Positives = 205/291 (70%)

Query:     9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
             PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct:     7 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query:    69 LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
             L+  A  +A+ +ADFTAK+WDA+TGDE  +  HKHIV++  F++D++ LLTGG +K+LRI
Sbjct:    67 LNTEATKAATAAADFTAKVWDAVTGDEVLTLAHKHIVKSVNFTQDSNYLLTGGNDKVLRI 126

Query:   129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
             +DL++P+A P+E+   + +I+   W ++DQ ILS+  D   +RLWD  + + V+TL   +
Sbjct:   127 YDLSKPEAEPQEIAGHTSAIKKALWCNNDQQILSAADDKT-IRLWDKNTNEAVKTLSFDA 185

Query:   189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
              V+S E   DG  +    G ++ F++A+   L+K  + P +  SASL P   + F+AGG+
Sbjct:   186 SVSSMEYIPDGETLVITYGRTIAFYNAHSLDLIKTVDAPASIHSASLHPDK-DFFVAGGD 244

Query:   249 DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299
             D  ++ +D+ T E++   KGH GPVHCVRFSP GE YASGSEDGT+R+WQT
Sbjct:   245 DFKLYKYDYTTKEEMESYKGHFGPVHCVRFSPDGELYASGSEDGTLRLWQT 295

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

FB|FBgn0034876 wmd "wing morphogenesis defect" [Drosophila melanogaster (taxid:7227)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 148/292 (50%), Positives = 202/292 (69%)

Query:     8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSC 67
             +PL C GH+RPVV L +S I   G+FL+SA KD SPMLR+G+TGDW+GTFEGHKGAVW+ 
Sbjct:     9 IPLTCSGHTRPVVHLDFSDICDAGYFLISACKDGSPMLRHGDTGDWVGTFEGHKGAVWNA 68

Query:    68 CLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILR 127
              L+ NA  +ASG+ADFT K+W+A+TG E HSF+HKHIV++ AF  D+  ++TG  EK++R
Sbjct:    69 TLNRNATLAASGAADFTGKVWNAVTGAEIHSFQHKHIVKSVAFDRDSENIVTGSNEKLVR 128

Query:   128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187
             +F+L +P+A P E    +G+I+   +   D+ I+S+  D   VRLWD  +G  VQ L+  
Sbjct:   129 VFNLEQPEAQPEEYAGHTGAIKRALFCRGDKCIISAAEDKT-VRLWDRMTGIEVQRLQFN 187

Query:   188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247
             S   S E+S D   +T + GSS+ FW+ +    +K   +P N  SASL P   ++F+ GG
Sbjct:   188 SNPNSLEISSDNHILTISHGSSISFWEIDTLKKLKEVKVPTNVASASLHPDK-HVFVCGG 246

Query:   248 EDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299
             ED  ++ FD+ TG +I   KGH GPVH V+FSP GE YASGSEDGT+R+WQT
Sbjct:   247 EDFKMYKFDYITGNEIESFKGHFGPVHSVKFSPDGELYASGSEDGTLRLWQT 298

GO:0005102 "receptor binding" evidence=ISS

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

UNIPROTKB|E2RBU1 STRAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
 Identities = 144/291 (49%), Positives = 196/291 (67%)

Query:     9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
             PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct:     7 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query:    69 LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
             L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV+   F++D++ LLTGG +K+LRI
Sbjct:    67 LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI 126

Query:   129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
             +DLN+P+A P+E+   +  I+   W   D+ ILS+  D   VRLWD  +   V++L    
Sbjct:   127 YDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA--DDKTVRLWDHATMTEVKSLNFNM 184

Query:   189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
              V+S E   +G  +    G S+ F  A     +K +  P    SASL P+     +AGGE
Sbjct:   185 SVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPEK-EFLVAGGE 243

Query:   249 DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299
             D  ++ +D+++GE++   KGH GP+HCVRFSP GE YASGSEDGT+R+WQT
Sbjct:   244 DFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQT 294

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|Q9Y3F4 STRAP "Serine-threonine kinase receptor-associated protein" [Homo sapiens (taxid:9606)]

 Score = 772 (276.8 bits), Expect = 1.1e-76, P = 1.1e-76
 Identities = 144/291 (49%), Positives = 196/291 (67%)

Query:     9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
             PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct:     7 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query:    69 LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
             L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV+   F++D++ LLTGG +K+LRI
Sbjct:    67 LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI 126

Query:   129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
             +DLN+P+A P+E+   +  I+   W   D+ ILS+  D   VRLWD  +   V++L    
Sbjct:   127 YDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA--DDKTVRLWDHATMTEVKSLNFNM 184

Query:   189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
              V+S E   +G  +    G S+ F  A     +K +  P    SASL P+     +AGGE
Sbjct:   185 SVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPEK-EFLVAGGE 243

Query:   249 DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299
             D  ++ +D+++GE++   KGH GP+HCVRFSP GE YASGSEDGT+R+WQT
Sbjct:   244 DFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQT 294

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030054 "cell junction" evidence=IDA

UNIPROTKB|Q5E959 STRAP "Serine-threonine kinase receptor-associated protein" [Bos taurus (taxid:9913)]

 Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
 Identities = 144/291 (49%), Positives = 196/291 (67%)

Query:     9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
             PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct:     7 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query:    69 LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
             L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV+   F++D++ LLTGG +K+LRI
Sbjct:    67 LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI 126

Query:   129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
             +DLN+P+A P+E+   +  I+   W   D+ ILS+  D   VRLWD  +   V++L    
Sbjct:   127 YDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA--DDKTVRLWDHATMTEVKSLNFNM 184

Query:   189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
              V+S E   +G  +    G S+ F  A     +K +  P    SASL P+     +AGGE
Sbjct:   185 SVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPEK-EFVVAGGE 243

Query:   249 DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299
             D  ++ +D+++GE++   KGH GP+HCVRFSP GE YASGSEDGT+R+WQT
Sbjct:   244 DFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQT 294

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

MGI|MGI:1329037 Strap "serine/threonine kinase receptor associated protein" [Mus musculus (taxid:10090)]

 Score = 771 (276.5 bits), Expect = 1.5e-76, P = 1.5e-76
 Identities = 144/291 (49%), Positives = 196/291 (67%)

Query:     9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
             PL C GH+RPVVDL +S ITP G+FL+SA KD  PMLR G+TGDWIGTF GHKGAVW   
Sbjct:     7 PLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGAT 66

Query:    69 LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
             L+ +A  +A+ +ADFTAK+WDA++GDE  +  HKHIV+   F++D++ LLTGG +K+LRI
Sbjct:    67 LNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRI 126

Query:   129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
             +DLN+P+A P+E+   +  I+   W   D+ ILS+  D   VRLWD  +   V++L    
Sbjct:   127 YDLNKPEAEPKEISGHTSGIKKALWCSDDKQILSA--DDKTVRLWDHATMTEVKSLNFNM 184

Query:   189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
              V+S E   +G  +    G S+ F  A     +K +  P    SASL P+     +AGGE
Sbjct:   185 SVSSMEYIPEGEILVITYGRSIAFHSAVSLEPIKSFEAPATINSASLHPEK-EFLVAGGE 243

Query:   249 DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299
             D  ++ +D+++GE++   KGH GP+HCVRFSP GE YASGSEDGT+R+WQT
Sbjct:   244 DFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQT 294

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0005102 "receptor binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Y3F4	STRAP_HUMAN	No assigned EC number	0.4948	0.8228	0.8228	yes	no
Q9Z1Z2	STRAP_MOUSE	No assigned EC number	0.4948	0.8228	0.8228	yes	no
Q5E959	STRAP_BOVIN	No assigned EC number	0.4948	0.8228	0.8228	yes	no
Q5ZL33	STRAP_CHICK	No assigned EC number	0.4863	0.8257	0.8257	yes	no
Q54LT8	STRAP_DICDI	No assigned EC number	0.5360	0.82	0.9795	yes	no
Q5XIG8	STRAP_RAT	No assigned EC number	0.4948	0.8228	0.8228	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	350
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-48
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-45
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-30
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-27
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-26
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-25
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-25
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-11
smart00320	40	smart00320, WD40, WD40 repeats	3e-08
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-07
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	3e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	7e-06
smart00320	40	smart00320, WD40, WD40 repeats	3e-05

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  165 bits (419), Expect = 1e-48
 Identities = 93/291 (31%), Positives = 147/291 (50%), Gaps = 14/291 (4%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
           GH+  V  + +SP   DG  L + S D +  + + ETG+ + T +GH G V      A+ 
Sbjct: 7   GHTGGVTCVAFSP---DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG 63

Query: 74  LFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLN 132
            + ASGS+D T +LWD  TG+   +   H   V + AFS D  +L +   +K ++++D+ 
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123

Query: 133 RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVT 191
                   +   +  + +VA+      + SS  D G ++LWD R+GK V TL      V 
Sbjct: 124 TGK-CLTTLRGHTDWVNSVAFSPDGTFVASSSQD-GTIKLWDLRTGKCVATLTGHTGEVN 181

Query: 192 SAEVSRDG-RYITTADGSSVKFWDAN---HFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247
           S   S DG + ++++   ++K WD +     G ++G+    N  S +  P  G +  +G 
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVN--SVAFSPD-GYLLASGS 238

Query: 248 EDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298
           ED  + V+D  TGE +    GH   V  + +SP G+  ASGS DGTIRIW 
Sbjct: 239 EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  155 bits (394), Expect = 4e-45
 Identities = 79/252 (31%), Positives = 120/252 (47%), Gaps = 11/252 (4%)

Query: 54  IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSE 112
             T +GH G V       +    A+GS D T K+WD  TG+   + + H   VR  A S 
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA 61

Query: 113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL 172
           D   L +G  +K +R++DL       R +   +  + +VA+   D  ILSS +    +++
Sbjct: 62  DGTYLASGSSDKTIRLWDLETG-ECVRTLTGHTSYVSSVAF-SPDGRILSSSSRDKTIKV 119

Query: 173 WDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADG-SSVKFWDANHFGLVK---GYNMP 227
           WD  +GK + TL      V S   S DG ++ ++    ++K WD      V    G+   
Sbjct: 120 WDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGE 179

Query: 228 CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYAS 287
            N  S +  P  G   ++   D  + ++D  TG+ +G  +GH   V+ V FSP G   AS
Sbjct: 180 VN--SVAFSPD-GEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236

Query: 288 GSEDGTIRIWQT 299
           GSEDGTIR+W  
Sbjct: 237 GSEDGTIRVWDL 248

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  120 bits (301), Expect = 2e-30
 Identities = 97/292 (33%), Positives = 138/292 (47%), Gaps = 13/292 (4%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSAS-KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN 72
           GHS  V  L +SP   DG  L S S  D +  L +  TG  + T  GH   V S     +
Sbjct: 153 GHSESVTSLAFSP---DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPD 209

Query: 73  A-LFSASGSADFTAKLWDALTGDEKHSFEHKHIVRAC-AFSEDTHLLLTGGFEKILRIFD 130
             L  ASGS+D T +LWD  TG    S    H      +FS D  LL +G  +  +R++D
Sbjct: 210 GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWD 269

Query: 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL---ETK 187
           L    +  R +   S S+ +VA+    + + S  +D G VRLWD  +GK++ +L     +
Sbjct: 270 LRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD-GTVRLWDLETGKLLSSLTLKGHE 328

Query: 188 SPVTSAEVSRDGRYITTADGS--SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
            PV+S   S DG  + +      +++ WD      +K      N  S S  P  G +  +
Sbjct: 329 GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPD-GRVVSS 387

Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
           G  D  V ++D  TG  +    GH   V  + FSP G+S ASGS D TIR+W
Sbjct: 388 GSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLW 439

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  110 bits (276), Expect = 5e-27
 Identities = 67/268 (25%), Positives = 119/268 (44%), Gaps = 10/268 (3%)

Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK---HSFEHKHIVRACAF-- 110
              GH+ ++ S     +     SGS+D T KLWD   G++        H   V   A   
Sbjct: 60  LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS 119

Query: 111 -SEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169
              ++ LL +   +  ++++DL+ P    R +   S S+ ++A+    + + S  +  G 
Sbjct: 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179

Query: 170 VRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITT--ADGSSVKFWDANHFGLVKGYNM 226
           ++LWD R+GK + TL     PV+S   S DG  +    +   +++ WD +   L++    
Sbjct: 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS 239

Query: 227 PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ-IGCNKGHHGPVHCVRFSPGGESY 285
             +    S     G++  +G  D  + ++D  +    +    GH   V  V FSP G+  
Sbjct: 240 GHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299

Query: 286 ASGSEDGTIRIWQTNPPNHEENHSGTGN 313
           ASGS DGT+R+W         + +  G+
Sbjct: 300 ASGSSDGTVRLWDLETGKLLSSLTLKGH 327

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  109 bits (273), Expect = 1e-26
 Identities = 92/315 (29%), Positives = 145/315 (46%), Gaps = 20/315 (6%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW-IGTFEG-HKGAVWSCCL-- 69
           GH   +  + +SP   DG  L+S S D +  L + + G+  I + EG H  +V    L  
Sbjct: 63  GHEDSITSIAFSP---DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS 119

Query: 70  -DANALFSASGSADFTAKLWDALTGDE-KHSFE-HKHIVRACAFSEDTHLLLTGGFEK-I 125
            D N++  AS S D T KLWD  T  +   + E H   V + AFS D  LL +G      
Sbjct: 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179

Query: 126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ-TL 184
           ++++DL R   P   +   +  + ++A+      +++S +  G +RLWD  +GK+++ TL
Sbjct: 180 IKLWDL-RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL 238

Query: 185 ETKSPVTSAEVSRDGRYITTADG-SSVKFWDANHFG--LVKGYNMPCNTESASLEPKLGN 241
              S    +  S DG  + +     +++ WD       L        +  S +  P  G 
Sbjct: 239 SGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD-GK 297

Query: 242 IFIAGGEDMWVHVFDFHTGEQIGC--NKGHHGPVHCVRFSPGGESYASG-SEDGTIRIWQ 298
           +  +G  D  V ++D  TG+ +     KGH GPV  + FSP G    SG S+DGTIR+W 
Sbjct: 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357

Query: 299 TNPPNHEENHSGTGN 313
                  +   G  N
Sbjct: 358 LRTGKPLKTLEGHSN 372

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  102 bits (255), Expect = 5e-25
 Identities = 56/211 (26%), Positives = 85/211 (40%), Gaps = 44/211 (20%)

Query: 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160
           H   V   AFS D  LL TG  +  ++++DL   +      G++ G +R VA       +
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT-GPVRDVAASADGTYL 66

Query: 161 LSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDANHFG 219
            S  +D   +RLWD  +G+ V+TL    S V+S   S DGR +++               
Sbjct: 67  ASGSSD-KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSS--------------- 110

Query: 220 LVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFS 279
                                        D  + V+D  TG+ +   +GH   V+ V FS
Sbjct: 111 --------------------------SSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS 144

Query: 280 PGGESYASGSEDGTIRIWQTNPPNHEENHSG 310
           P G   AS S+DGTI++W           +G
Sbjct: 145 PDGTFVASSSQDGTIKLWDLRTGKCVATLTG 175

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  101 bits (254), Expect = 9e-25
 Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 6/165 (3%)

Query: 11  VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLD 70
              GH+  V  + +S   PDG F+ S+S+D +  L +  TG  + T  GH G V S    
Sbjct: 130 TLRGHTDWVNSVAFS---PDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS 186

Query: 71  ANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIF 129
            +     S S+D T KLWD  TG    +   H++ V + AFS D +LL +G  +  +R++
Sbjct: 187 PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVW 246

Query: 130 DLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
           DL R     + +   + S+ ++AW   D   L+S +  G +R+WD
Sbjct: 247 DL-RTGECVQTLSGHTNSVTSLAW-SPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 97.9 bits (242), Expect = 1e-22
 Identities = 88/309 (28%), Positives = 132/309 (42%), Gaps = 13/309 (4%)

Query: 2   DKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW-IGTFEGH 60
           D  +  +  +   H   V  L  S    +   L S+S D +  L +  T    I T EGH
Sbjct: 95  DNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGH 154

Query: 61  KGAVWSCCLDANALFSASGS-ADFTAKLWDALTGDEKHSFE-HKHIVRACAFSED-THLL 117
             +V S     +    ASGS  D T KLWD  TG    +   H   V + AFS D   L+
Sbjct: 155 SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI 214

Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
            +G  +  +R++DL+        +   S S   V+    D ++L+S +  G +RLWD RS
Sbjct: 215 ASGSSDGTIRLWDLSTGKLLRSTLSGHSDS--VVSSFSPDGSLLASGSSDGTIRLWDLRS 272

Query: 178 GKI-VQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANH---FGLVKGYNMPCNTE 231
               ++TL    S V S   S DG+ + +     +V+ WD         +          
Sbjct: 273 SSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVS 332

Query: 232 SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSED 291
           S S  P    +   G +D  + ++D  TG+ +      H  V  V FSP G   +SGS D
Sbjct: 333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT-LEGHSNVLSVSFSPDGRVVSSGSTD 391

Query: 292 GTIRIWQTN 300
           GT+R+W  +
Sbjct: 392 GTVRLWDLS 400

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 65.5 bits (158), Expect = 1e-11
 Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 8/181 (4%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG--TFEGHKGAVWSC-CLD 70
           GHS  V+ + +SP   DG  L S S D +  L + ETG  +   T +GH+G V S     
Sbjct: 282 GHSSSVLSVAFSP---DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSP 338

Query: 71  ANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFD 130
             +L  + GS D T +LWD  TG    + E    V + +FS D  ++ +G  +  +R++D
Sbjct: 339 DGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWD 398

Query: 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPV 190
           L+      R +   +  + ++ +   D   L+S +    +RLWD ++     +      V
Sbjct: 399 LSTGS-LLRNLDGHTSRVTSLDF-SPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKV 456

Query: 191 T 191
            
Sbjct: 457 L 457

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 48.8 bits (117), Expect = 3e-08
 Identities = 22/39 (56%), Positives = 28/39 (71%)

Query: 259 TGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
           +GE +   KGH GPV  V FSP G+  ASGS+DGTI++W
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 21/38 (55%), Positives = 26/38 (68%)

Query: 260 GEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
           G+ +   KGH GPV  V FSP G   ASGS+DGT+R+W
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 267 KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE---ENHSG 310
           KGH G V CV FSP G+  A+GS DGTI++W           + H+G
Sbjct: 6   KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG 52

Length = 289

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 48/205 (23%), Positives = 79/205 (38%), Gaps = 11/205 (5%)

Query: 103 HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG------NSSGSIRTVAWLHS 156
           ++V A  F  D     T G  K ++IF+        R++        S   +  + W   
Sbjct: 484 NLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSY 543

Query: 157 DQTILSSCTDSGGVRLWD-ARSGKIVQTLETKSPVTSAEVSRDGRYI--TTADGSSVKFW 213
            ++ ++S    G V++WD ARS  + +  E +  V S + S     +  + +D  SVK W
Sbjct: 544 IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLW 603

Query: 214 DANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK-GHHGP 272
             N    +       N        + G     G  D  V+ +D    +   C   GH   
Sbjct: 604 SINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKT 663

Query: 273 VHCVRFSPGGESYASGSEDGTIRIW 297
           V  VRF     +  S S D T+++W
Sbjct: 664 VSYVRFV-DSSTLVSSSTDNTLKLW 687

Length = 793

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.0 bits (99), Expect = 7e-06
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89
          + T +GH G V S     +    ASGS D T ++WD
Sbjct: 4  LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 50 TGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89
          +G+ + T +GH G V S     +  + ASGS D T KLWD
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	350
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0288	459	consensus WD40 repeat protein TipD [General functi	100.0
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0283	712	consensus WD40 repeat-containing protein [Function	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG1407	313	consensus WD40 repeat protein [Function unknown]	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0300	481	consensus WD40 repeat-containing protein [Function	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.98
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.98
PTZ00421	493	coronin; Provisional	99.98
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.98
KOG0296	399	consensus Angio-associated migratory cell protein	99.98
KOG0645	312	consensus WD40 repeat protein [General function pr	99.98
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
PTZ00421	493	coronin; Provisional	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.97
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.97
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
PTZ00420	568	coronin; Provisional	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.93
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.93
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
KOG0641	350	consensus WD40 repeat protein [General function pr	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG0267	825	consensus Microtubule severing protein katanin p80	99.93
KOG4328	498	consensus WD40 protein [Function unknown]	99.93
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.93
KOG0643	327	consensus Translation initiation factor 3, subunit	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG2096	420	consensus WD40 repeat protein [General function pr	99.92
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.92
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.92
KOG1539	910	consensus WD repeat protein [General function pred	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG0267	825	consensus Microtubule severing protein katanin p80	99.91
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.91
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.91
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.91
KOG2048	691	consensus WD40 repeat protein [General function pr	99.91
KOG2096	420	consensus WD40 repeat protein [General function pr	99.9
KOG1188	376	consensus WD40 repeat protein [General function pr	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.9
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG4227	609	consensus WD40 repeat protein [General function pr	99.89
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.89
KOG1274	933	consensus WD40 repeat protein [General function pr	99.89
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.89
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.89
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.89
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.89
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.88
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.88
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.88
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.87
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.87
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.87
COG2319	466	FOG: WD40 repeat [General function prediction only	99.87
COG2319	466	FOG: WD40 repeat [General function prediction only	99.86
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.86
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.86
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.85
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.85
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.85
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.84
KOG2055	514	consensus WD40 repeat protein [General function pr	99.84
KOG2048	691	consensus WD40 repeat protein [General function pr	99.84
KOG1273	405	consensus WD40 repeat protein [General function pr	99.84
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.84
KOG1310	758	consensus WD40 repeat protein [General function pr	99.83
PRK11028	330	6-phosphogluconolactonase; Provisional	99.83
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.82
KOG0649	325	consensus WD40 repeat protein [General function pr	99.82
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.81
KOG4328	498	consensus WD40 protein [Function unknown]	99.81
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.81
KOG1963	792	consensus WD40 repeat protein [General function pr	99.8
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.79
KOG1334	559	consensus WD40 repeat protein [General function pr	99.78
PRK01742	429	tolB translocation protein TolB; Provisional	99.78
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.78
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.77
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.77
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.75
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.75
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.74
KOG1310	758	consensus WD40 repeat protein [General function pr	99.74
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.73
KOG1963	792	consensus WD40 repeat protein [General function pr	99.73
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.72
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.72
PRK11028	330	6-phosphogluconolactonase; Provisional	99.72
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.7
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.7
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.69
KOG4227	609	consensus WD40 repeat protein [General function pr	99.69
KOG0649	325	consensus WD40 repeat protein [General function pr	99.66
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.66
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.66
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.66
PRK01742	429	tolB translocation protein TolB; Provisional	99.66
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.66
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.65
KOG1188	376	consensus WD40 repeat protein [General function pr	99.65
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.65
KOG1334	559	consensus WD40 repeat protein [General function pr	99.65
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.64
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.62
PRK02889	427	tolB translocation protein TolB; Provisional	99.6
PRK03629	429	tolB translocation protein TolB; Provisional	99.59
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.59
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.57
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.56
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.56
PRK04922	433	tolB translocation protein TolB; Provisional	99.55
PRK05137	435	tolB translocation protein TolB; Provisional	99.55
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.55
PRK03629	429	tolB translocation protein TolB; Provisional	99.54
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.53
PRK05137	435	tolB translocation protein TolB; Provisional	99.52
KOG2321	703	consensus WD40 repeat protein [General function pr	99.52
PRK04922	433	tolB translocation protein TolB; Provisional	99.5
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.48
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.48
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.48
KOG2321	703	consensus WD40 repeat protein [General function pr	99.47
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.45
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.45
KOG2139	445	consensus WD40 repeat protein [General function pr	99.44
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.43
KOG2315	566	consensus Predicted translation initiation factor	99.42
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.42
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.39
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.39
PRK04792	448	tolB translocation protein TolB; Provisional	99.38
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.38
PRK02889	427	tolB translocation protein TolB; Provisional	99.38
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.37
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.37
KOG2139	445	consensus WD40 repeat protein [General function pr	99.35
PRK00178	430	tolB translocation protein TolB; Provisional	99.35
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.35
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.34
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.34
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.34
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.33
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.32
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.31
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.3
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.29
PRK00178	430	tolB translocation protein TolB; Provisional	99.29
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.27
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.27
KOG4547	541	consensus WD40 repeat-containing protein [General	99.25
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.25
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.25
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.24
PRK04792	448	tolB translocation protein TolB; Provisional	99.24
PRK01029	428	tolB translocation protein TolB; Provisional	99.21
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.19
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.16
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.15
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.15
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.14
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.13
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.11
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.1
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.09
PRK01029	428	tolB translocation protein TolB; Provisional	99.08
COG4946	668	Uncharacterized protein related to the periplasmic	99.05
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.03
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.02
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.01
KOG4547	541	consensus WD40 repeat-containing protein [General	98.99
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.95
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.95
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.94
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.92
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.91
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.91
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.91
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.91
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.9
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.89
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.88
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.87
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.85
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.84
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.84
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.84
KOG2314	698	consensus Translation initiation factor 3, subunit	98.81
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.79
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.79
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.78
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.77
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.72
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.71
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.69
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.68
KOG2314	698	consensus Translation initiation factor 3, subunit	98.68
KOG2695	425	consensus WD40 repeat protein [General function pr	98.67
PRK04043	419	tolB translocation protein TolB; Provisional	98.66
KOG2315	566	consensus Predicted translation initiation factor	98.64
PRK04043	419	tolB translocation protein TolB; Provisional	98.63
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.6
KOG2695	425	consensus WD40 repeat protein [General function pr	98.6
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.56
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.56
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.54
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.53
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.5
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.46
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.44
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.43
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.39
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.31
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.3
COG4946	668	Uncharacterized protein related to the periplasmic	98.29
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.29
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.28
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.28
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.26
KOG3621	726	consensus WD40 repeat-containing protein [General	98.2
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.2
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.17
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.16
PRK02888	635	nitrous-oxide reductase; Validated	98.16
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.14
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.13
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.09
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.06
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.04
PRK02888	635	nitrous-oxide reductase; Validated	98.04
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.94
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.93
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.91
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.9
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.89
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.89
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.89
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.89
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.88
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.86
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.79
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.78
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.71
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.69
KOG2395	644	consensus Protein involved in vacuole import and d	97.66
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.65
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.64
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.6
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.58
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.58
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.57
COG3391	381	Uncharacterized conserved protein [Function unknow	97.51
COG3391	381	Uncharacterized conserved protein [Function unknow	97.49
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.49
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.47
PHA02713	557	hypothetical protein; Provisional	97.46
KOG3621	726	consensus WD40 repeat-containing protein [General	97.45
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.44
PHA02713	557	hypothetical protein; Provisional	97.31
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.29
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.28
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.25
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.23
KOG2444	238	consensus WD40 repeat protein [General function pr	97.18
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.13
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.12
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.07
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.06
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.06
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.87
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.8
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.73
KOG2395	644	consensus Protein involved in vacuole import and d	96.68
PRK13616	591	lipoprotein LpqB; Provisional	96.52
PRK13616	591	lipoprotein LpqB; Provisional	96.51
KOG2444	238	consensus WD40 repeat protein [General function pr	96.51
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.5
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.47
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.31
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.29
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.28
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.16
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.06
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.03
PHA02790	480	Kelch-like protein; Provisional	95.99
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.93
PHA03098	534	kelch-like protein; Provisional	95.8
PHA03098	534	kelch-like protein; Provisional	95.69
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.63
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.5
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.46
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.43
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.34
COG5167	776	VID27 Protein involved in vacuole import and degra	95.32
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.19
PHA02790	480	Kelch-like protein; Provisional	95.14
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.04
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.94
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.83
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.64
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.5
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.2
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.16
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.12
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	94.06
PRK13684	334	Ycf48-like protein; Provisional	94.03
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.86
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.63
PF14727	418	PHTB1_N: PTHB1 N-terminus	93.6
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.02
PRK10115	686	protease 2; Provisional	92.74
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.7
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.38
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	92.08
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.03
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.93
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	91.81
KOG3616	1636	consensus Selective LIM binding factor [Transcript	91.66
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	91.16
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	91.12
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.03
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	90.67
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	90.66
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	90.47
COG5167	776	VID27 Protein involved in vacuole import and degra	90.38
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.37
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	89.74
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	89.7
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	88.47
COG4590	733	ABC-type uncharacterized transport system, permeas	87.84
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	87.82
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	87.56
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	87.53
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.08
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	87.01
PLN00033	398	photosystem II stability/assembly factor; Provisio	86.92
KOG2247	615	consensus WD40 repeat-containing protein [General	86.91
PF14727	418	PHTB1_N: PTHB1 N-terminus	86.88
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	86.62
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	86.28
PRK10115	686	protease 2; Provisional	86.14
PF12768	281	Rax2: Cortical protein marker for cell polarity	86.1
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	86.06
COG5276	370	Uncharacterized conserved protein [Function unknow	85.64
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	84.73
PLN00033	398	photosystem II stability/assembly factor; Provisio	84.32
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	84.07
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	84.05
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	83.96
PRK13684	334	Ycf48-like protein; Provisional	83.83
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	83.54
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	83.47
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	83.42
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	83.23
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	82.65
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	82.64
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	82.38
KOG2377	657	consensus Uncharacterized conserved protein [Funct	82.35
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	81.63
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	81.54
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	81.05
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	80.83
KOG2377	657	consensus Uncharacterized conserved protein [Funct	80.63
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	80.23
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	80.08

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=5e-62  Score=389.47  Aligned_cols=331  Identities=65%  Similarity=1.073  Sum_probs=305.6

Q ss_pred             ccccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCC
Q 018784            4 RKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF   83 (350)
Q Consensus         4 ~~~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg   83 (350)
                      -+.+.|++|+||+.||..++|+|++|+|.+|++++.|+.-.+.+.++|.++.+|+||.+.|++.+++.+....||++.|.
T Consensus         2 ~~~~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadf   81 (334)
T KOG0278|consen    2 AMRQTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADF   81 (334)
T ss_pred             CcccCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccc
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEE
Q 018784           84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (350)
Q Consensus        84 ~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s  163 (350)
                      +.+|||..++..++++.|+..|.+++|+.|.++|++|+.+..+||||+.+++.++.....|.+.|..+.|.+.++.++.+
T Consensus        82 takvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS  161 (334)
T KOG0278|consen   82 TAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS  161 (334)
T ss_pred             hhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999877765554


Q ss_pred             EeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEE
Q 018784          164 CTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIF  243 (350)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (350)
                       ++|++||+||.+++..++++..+.+++++.++++|++++.+.++.|.+||..++..++.+.+|++..+.++.|.. ..+
T Consensus       162 -add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k-~~f  239 (334)
T KOG0278|consen  162 -ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK-EFF  239 (334)
T ss_pred             -ccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCC-ceE
Confidence             899999999999999999999999999999999999999999999999999999999999999999999999975 999


Q ss_pred             EEecCCCeEEEEEcccCeeEEee-cCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccc
Q 018784          244 IAGGEDMWVHVFDFHTGEQIGCN-KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKAS  322 (350)
Q Consensus       244 ~sg~~d~~i~v~d~~~~~~~~~~-~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~  322 (350)
                      ++|++|..++.||..+|+.+..+ ++|.++|.|++|+|+|...|+||+||+|+||...+.+..+.-      ...+....
T Consensus       240 VaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~~~~------~~~~~ed~  313 (334)
T KOG0278|consen  240 VAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTYGLW------KCVKPEDD  313 (334)
T ss_pred             EecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCchhhc------cccChhhh
Confidence            99999999999999999999886 899999999999999999999999999999998766554311      11222344


Q ss_pred             cccceeeeeeEEEcccchhH
Q 018784          323 TDEVTRKIEGFHINKEGKAE  342 (350)
Q Consensus       323 ~~~~~~~i~~~~~~~~g~~~  342 (350)
                      .++..+..++|.++++++-.
T Consensus       314 ~eev~s~~e~~~~~~e~~~~  333 (334)
T KOG0278|consen  314 GEEVASPKEGFPITTEEELA  333 (334)
T ss_pred             cccccccccccccCchhhhc
Confidence            56778888999998887644

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.7e-50  Score=337.49  Aligned_cols=308  Identities=23%  Similarity=0.354  Sum_probs=260.2

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~   92 (350)
                      .||.++|.+++|+|   +|+.|||||.|.++|+||+.+..+.++++||.+-|.|++|+||++.+|||+.||+|++||..+
T Consensus       112 ~GH~e~Vl~~~fsp---~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt  188 (480)
T KOG0271|consen  112 AGHGEAVLSVQFSP---TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT  188 (480)
T ss_pred             CCCCCcEEEEEecC---CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence            59999999999997   999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeee-e-eccccEeEEEEcC-----CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe
Q 018784           93 GDEKHS-F-EHKHIVRACAFSE-----DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (350)
Q Consensus        93 ~~~~~~-~-~h~~~V~~~~~~~-----~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~  165 (350)
                      ++++.. + .|+..|.+++|.|     ...+|++++.||.++|||+..+.. ......|...|+++.|-  ++.++++++
T Consensus       189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~-~~~lsgHT~~VTCvrwG--G~gliySgS  265 (480)
T KOG0271|consen  189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC-VRTLSGHTASVTCVRWG--GEGLIYSGS  265 (480)
T ss_pred             CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE-EEEeccCccceEEEEEc--CCceEEecC
Confidence            886653 3 6999999999975     567999999999999999975443 34557899999999985  566899999


Q ss_pred             CCCeEEEEECCCCceeEeecCC-CCeEEEEEe-----------cCCc-------------------------EEE-EEcC
Q 018784          166 DSGGVRLWDARSGKIVQTLETK-SPVTSAEVS-----------RDGR-------------------------YIT-TADG  207 (350)
Q Consensus       166 ~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~-----------~~~~-------------------------~l~-~~~~  207 (350)
                      .|++|++|+...|++...++.+ ..|+.++.+           |.++                         .|+ +++|
T Consensus       266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd  345 (480)
T KOG0271|consen  266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD  345 (480)
T ss_pred             CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence            9999999999999998888865 456766654           2222                         244 4567


Q ss_pred             CcEEEEECCCcc-eeeeeecCCCCc-eeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEE
Q 018784          208 SSVKFWDANHFG-LVKGYNMPCNTE-SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESY  285 (350)
Q Consensus       208 ~~i~vwd~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~l  285 (350)
                      .++.+|+....+ ++...+.+.... .+.|+| +++++++++-|+.|++||.++|+.+.++.||-.+|+.++|+.|.++|
T Consensus       346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLl  424 (480)
T KOG0271|consen  346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLL  424 (480)
T ss_pred             ceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEE
Confidence            899999976543 555555554444 344554 69999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccchhH
Q 018784          286 ASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKAE  342 (350)
Q Consensus       286 asgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~  342 (350)
                      +|||.|.++++|++++.+.               ....-.+.-++-++.++|||+++
T Consensus       425 VS~SkDsTLKvw~V~tkKl---------------~~DLpGh~DEVf~vDwspDG~rV  466 (480)
T KOG0271|consen  425 VSGSKDSTLKVWDVRTKKL---------------KQDLPGHADEVFAVDWSPDGQRV  466 (480)
T ss_pred             EEcCCCceEEEEEeeeeee---------------cccCCCCCceEEEEEecCCCcee
Confidence            9999999999999865543               44445555667889999999875

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.4e-48  Score=331.35  Aligned_cols=280  Identities=23%  Similarity=0.337  Sum_probs=251.6

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCC--CcEEEEeeCCCeEEEeeCC
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN--ALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~--~~~l~s~s~Dg~v~vWd~~   91 (350)
                      |-+.||..+.|+.   |++.|||||.+|.+++|+......+.+|.||++.|.++.|+|.  +..+||++.||++++|++.
T Consensus       173 gd~rPis~~~fS~---ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~  249 (459)
T KOG0272|consen  173 GDTRPISGCSFSR---DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS  249 (459)
T ss_pred             cCCCcceeeEeec---CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence            7789999999986   9999999999999999999999999999999999999999996  6789999999999999998


Q ss_pred             CCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784           92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (350)
Q Consensus        92 ~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i  170 (350)
                      +..++..+ .|...|..++|||+|++|+|++.|.+.++||+.+......+ .+|...|.+++|. +++.++++|+.|..-
T Consensus       250 ~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q-EGHs~~v~~iaf~-~DGSL~~tGGlD~~~  327 (459)
T KOG0272|consen  250 QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ-EGHSKGVFSIAFQ-PDGSLAATGGLDSLG  327 (459)
T ss_pred             CCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh-cccccccceeEec-CCCceeeccCccchh
Confidence            77666665 58889999999999999999999999999999977655544 4577789999985 678899999999999


Q ss_pred             EEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCCc-eeEecCCCCcEEEEec
Q 018784          171 RLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPKLGNIFIAGG  247 (350)
Q Consensus       171 ~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~sg~  247 (350)
                      +|||+|+|+++..+..+ .+|.++.|+|+|..++++ .|++++|||++...++..+..+.+.. .+.+.|..|.+|++++
T Consensus       328 RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas  407 (459)
T KOG0272|consen  328 RVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS  407 (459)
T ss_pred             heeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc
Confidence            99999999999999865 689999999999998876 58899999999888866655554443 4556677899999999


Q ss_pred             CCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          248 EDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       248 ~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      .|+++++|...++.++..+.||.+.|.++.++|++++++|+|.|.++++|.
T Consensus       408 yD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  408 YDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            999999999999999999999999999999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-45  Score=310.82  Aligned_cols=282  Identities=26%  Similarity=0.416  Sum_probs=241.4

Q ss_pred             EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCcee-eeccCccCCeEEEEEC-----CCCcEEEEeeCCCe
Q 018784           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI-GTFEGHKGAVWSCCLD-----ANALFSASGSADFT   84 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~-~~l~gH~~~V~~v~~~-----~~~~~l~s~s~Dg~   84 (350)
                      .|+||+.=|.||+++|   ||+.||||+.||+|++||.++|+++ ..|.||+..|.+++|.     |.+++|||+|.||+
T Consensus       152 t~KgH~~WVlcvawsP---Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~  228 (480)
T KOG0271|consen  152 TCKGHKNWVLCVAWSP---DGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGS  228 (480)
T ss_pred             eecCCccEEEEEEECC---CcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCC
Confidence            4799999999998886   9999999999999999999998765 5899999999999985     46789999999999


Q ss_pred             EEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEe---------
Q 018784           85 AKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL---------  154 (350)
Q Consensus        85 v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~---------  154 (350)
                      |+|||+..+.++..+ .|+..|+|+.|--+| ++++|+.|++|++|+..++.. ...+..|...|..++.+         
T Consensus       229 vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~-~r~lkGHahwvN~lalsTdy~LRtga  306 (480)
T KOG0271|consen  229 VRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKL-CRELKGHAHWVNHLALSTDYVLRTGA  306 (480)
T ss_pred             EEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhH-HHhhcccchheeeeeccchhhhhccc
Confidence            999999888877766 699999999998766 789999999999999876543 34556677778777654         


Q ss_pred             --CCCC------------------------cEEEEEeCCCeEEEEECCC-CceeEeec-CCCCeEEEEEecCCcEEEEEc
Q 018784          155 --HSDQ------------------------TILSSCTDSGGVRLWDARS-GKIVQTLE-TKSPVTSAEVSRDGRYITTAD  206 (350)
Q Consensus       155 --~~~~------------------------~~~~s~~~dg~i~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~  206 (350)
                        |.+.                        ..+++|++|.++.+|+... .+++..+. ++.-|+.+.|+||++++++++
T Consensus       307 f~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaS  386 (480)
T KOG0271|consen  307 FDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASAS  386 (480)
T ss_pred             cccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEee
Confidence              1111                        2589999999999999754 44665555 456799999999999998875


Q ss_pred             -CCcEEEEECCCcceeeeeecCCCC-ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCE
Q 018784          207 -GSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGES  284 (350)
Q Consensus       207 -~~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~  284 (350)
                       |..|++||.++++.+.++..+... +.+.+.. +.++|++|+.|.++++|++++.++...+.||.+.|+++.|+|||..
T Consensus       387 FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~r  465 (480)
T KOG0271|consen  387 FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQR  465 (480)
T ss_pred             cccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCce
Confidence             899999999999988888766544 3445544 5789999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCcEEEec
Q 018784          285 YASGSEDGTIRIWQ  298 (350)
Q Consensus       285 lasgs~Dg~v~vw~  298 (350)
                      +++|+.|..+++|.
T Consensus       466 V~sggkdkv~~lw~  479 (480)
T KOG0271|consen  466 VASGGKDKVLRLWR  479 (480)
T ss_pred             eecCCCceEEEeec
Confidence            99999999999995

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-42  Score=278.79  Aligned_cols=284  Identities=22%  Similarity=0.325  Sum_probs=240.3

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCC-----CCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEE
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE-----TGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~-----~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~   86 (350)
                      +.||++.|..++-.+..+  .+++++|.|.++.+|++.     .|.+.+.|.||+..|..+..++++.+++|+|.|+++|
T Consensus        11 l~gh~d~Vt~la~~~~~~--~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr   88 (315)
T KOG0279|consen   11 LEGHTDWVTALAIKIKNS--DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR   88 (315)
T ss_pred             ecCCCceEEEEEeecCCC--ceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence            579999999998877544  499999999999999964     4777899999999999999999999999999999999


Q ss_pred             EeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee-cCCCCcEEEEEEeCCC-CcEEEE
Q 018784           87 LWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSD-QTILSS  163 (350)
Q Consensus        87 vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~~~~s  163 (350)
                      +||+.+++....+ .|...|.+++|+++...+++|+.|++|++|++... +..... ..+.+.|.++.|+|.. +.++++
T Consensus        89 lWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs  167 (315)
T KOG0279|consen   89 LWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVS  167 (315)
T ss_pred             EEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence            9999998876665 69999999999999999999999999999998643 222222 2237899999999875 789999


Q ss_pred             EeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCCceeEecCCCCc
Q 018784          164 CTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGN  241 (350)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (350)
                      ++.|++|++||+++.+....+..+ ..++.+.++|||.+.+++ .|+.+.+||++..+.+..+.......++.|.|  .+
T Consensus       168 ~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fsp--nr  245 (315)
T KOG0279|consen  168 ASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSP--NR  245 (315)
T ss_pred             ccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecC--Cc
Confidence            999999999999999888777654 678999999999998775 58899999999998877666555566677776  47


Q ss_pred             EEEEecCCCeEEEEEcccCeeEEeec----CC-----CcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          242 IFIAGGEDMWVHVFDFHTGEQIGCNK----GH-----HGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       242 ~l~sg~~d~~i~v~d~~~~~~~~~~~----~h-----~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      +.++...+..|+|||+.++..+..+.    +.     .....+++|+++|..|++|-.|+.|++|.+.
T Consensus       246 ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  246 YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            88888888889999999988776553    22     2235778999999999999999999999864

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.3e-41  Score=277.86  Aligned_cols=283  Identities=26%  Similarity=0.409  Sum_probs=248.6

Q ss_pred             eEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (350)
Q Consensus        10 ~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd   89 (350)
                      -+++||..-|+++.|++   |++.++++|.||.+.|||..+....+.+.-.+.-|.+++|+|.++++|.||-|...-|++
T Consensus        49 r~LkGH~~Ki~~~~ws~---Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~  125 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWST---DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP  125 (343)
T ss_pred             EEecccccceeeeEecC---CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence            45799999999998876   999999999999999999999988888888889999999999999999999999999999


Q ss_pred             CCCCC------eee-eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEE
Q 018784           90 ALTGD------EKH-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS  162 (350)
Q Consensus        90 ~~~~~------~~~-~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  162 (350)
                      +.+.+      ... ...|++.+.++.|.+|+ .|+|++.|.+..+||++++... .....|.+.|.++...|.+.+.++
T Consensus       126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~-~~f~GH~gDV~slsl~p~~~ntFv  203 (343)
T KOG0286|consen  126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQT-QVFHGHTGDVMSLSLSPSDGNTFV  203 (343)
T ss_pred             cccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEE-EEecCCcccEEEEecCCCCCCeEE
Confidence            87552      112 23599999999999855 5889999999999999987654 445678999999999887899999


Q ss_pred             EEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCC---CCceeEecC
Q 018784          163 SCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPC---NTESASLEP  237 (350)
Q Consensus       163 s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~  237 (350)
                      +|+-|++.++||+|.+.+++++.. .+.|+++.|.|+|.-++++ +|+++|+||+|..+.+..|..+.   ...++.|+ 
T Consensus       204 Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS-  282 (343)
T KOG0286|consen  204 SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFS-  282 (343)
T ss_pred             ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEc-
Confidence            999999999999999999999986 4789999999999877665 57899999999988777665432   23444554 


Q ss_pred             CCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          238 KLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       238 ~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      ..|++|.+|..|.++.+||.-.++.+..+.||.+.|.++..+|||..++|||+|.++|||.
T Consensus       283 ~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  283 KSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            4699999999999999999999999999999999999999999999999999999999994

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=8.3e-40  Score=261.84  Aligned_cols=278  Identities=21%  Similarity=0.257  Sum_probs=228.1

Q ss_pred             ccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC--eeeee-eccccEeE
Q 018784           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD--EKHSF-EHKHIVRA  107 (350)
Q Consensus        31 g~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~--~~~~~-~h~~~V~~  107 (350)
                      .-+|||+|.|.+||+|.+.+|.|.+++..-.+.|+.+.+.|++.+||.++ -..||++|+.++.  ++.++ .|++.|.+
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVta   88 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTA   88 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEE
Confidence            45899999999999999999999999997788899999999999998765 5789999998876  45555 48899999


Q ss_pred             EEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-
Q 018784          108 CAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-  186 (350)
Q Consensus       108 ~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-  186 (350)
                      +.|..+|++++|||.||++||||++......  .-.+...|.++.. ++.+.-+++|..+|.|++||+++..+...+.. 
T Consensus        89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR--~~~~~spVn~vvl-hpnQteLis~dqsg~irvWDl~~~~c~~~liPe  165 (311)
T KOG0315|consen   89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR--NYQHNSPVNTVVL-HPNQTELISGDQSGNIRVWDLGENSCTHELIPE  165 (311)
T ss_pred             EEEeecCeEEEecCCCceEEEEeccCcccch--hccCCCCcceEEe-cCCcceEEeecCCCcEEEEEccCCccccccCCC
Confidence            9999999999999999999999998754332  2345578888865 56677788899999999999998876666543 


Q ss_pred             -CCCeEEEEEecCCcEEEEEc-CCcEEEEECCCcc------eeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcc
Q 018784          187 -KSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFG------LVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (350)
Q Consensus       187 -~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~  258 (350)
                       ..++.++.+.|+|+++++++ .|.+.+|++-...      ++..+..+.........+++.++|+++|.|.+++||+.+
T Consensus       166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~  245 (311)
T KOG0315|consen  166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD  245 (311)
T ss_pred             CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence             46899999999999998876 4789999986532      333344443333333344468999999999999999998


Q ss_pred             cC-eeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCCC
Q 018784          259 TG-EQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTG  312 (350)
Q Consensus       259 ~~-~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~  312 (350)
                      +- +....+++|.++++..+||.|++||++||.|+.+++|++...+..-...++.
T Consensus       246 ~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~  300 (311)
T KOG0315|consen  246 DFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH  300 (311)
T ss_pred             CceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcc
Confidence            87 5566789999999999999999999999999999999998777655555543

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.6e-40  Score=281.55  Aligned_cols=286  Identities=24%  Similarity=0.368  Sum_probs=241.1

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC---CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEe
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET---GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~---~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vW   88 (350)
                      +..|++.|+=+.||+   +|++|||||.|.+..||.+..   .+..+++.||..+|.-+.|+||.+++++++.|..+++|
T Consensus       220 l~~htdEVWfl~FS~---nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw  296 (519)
T KOG0293|consen  220 LQDHTDEVWFLQFSH---NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW  296 (519)
T ss_pred             HhhCCCcEEEEEEcC---CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence            578999999888886   999999999999999998643   35578999999999999999999999999999999999


Q ss_pred             eCCCCCeeeeeecc--ccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeC
Q 018784           89 DALTGDEKHSFEHK--HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD  166 (350)
Q Consensus        89 d~~~~~~~~~~~h~--~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~  166 (350)
                      |+.++..++.+.+.  ..+.+++|.|||..+++|+.|+++..||++... .....+.....|.+++..+++..+++.+ .
T Consensus       297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~-~  374 (519)
T KOG0293|consen  297 DVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVT-V  374 (519)
T ss_pred             cCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEe-c
Confidence            99999998888765  789999999999999999999999999997432 2222233345688999887666666655 7


Q ss_pred             CCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCCc---eeEecCCCCcE
Q 018784          167 SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTE---SASLEPKLGNI  242 (350)
Q Consensus       167 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  242 (350)
                      |..|++++.++......+..+.++++.+++.+++++.+. .+..+++||+.....++.|..+....   -.+|-..+...
T Consensus       375 d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~f  454 (519)
T KOG0293|consen  375 DKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKF  454 (519)
T ss_pred             ccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcce
Confidence            789999998877776677888999999999999998765 57899999999888888776654332   22233334578


Q ss_pred             EEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCC-CEEEEecCCCcEEEecCCCC
Q 018784          243 FIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGG-ESYASGSEDGTIRIWQTNPP  302 (350)
Q Consensus       243 l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~-~~lasgs~Dg~v~vw~~~~~  302 (350)
                      +++||+|++|++|+..+|+++..+.||...|++++|+|.. .+|||+|.||+||||.....
T Consensus       455 iaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  455 IASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             EEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence            9999999999999999999999999999999999999975 56899999999999976544

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.3e-40  Score=283.02  Aligned_cols=279  Identities=24%  Similarity=0.400  Sum_probs=239.5

Q ss_pred             CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCee
Q 018784           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK   96 (350)
Q Consensus        17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~   96 (350)
                      -+|..|.+.   |+|+.|++|+..|...+|+..+......+..|..+|+++.|++++.+++||+.+|.||+|+......+
T Consensus        97 c~V~~v~Wt---PeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk  173 (464)
T KOG0284|consen   97 CPVNVVRWT---PEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK  173 (464)
T ss_pred             cceeeEEEc---CCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH
Confidence            378888666   59999999999999999999777777778999999999999999999999999999999998776655


Q ss_pred             eeee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEEC
Q 018784           97 HSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (350)
Q Consensus        97 ~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~  175 (350)
                      .... |...|++++|+|+...+++++.|++|+|||...+.... .+.+|.-.|.+++|.| ...++++++.|+.|++||.
T Consensus       174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~-vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDp  251 (464)
T KOG0284|consen  174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER-VLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDP  251 (464)
T ss_pred             HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhh-eeccCCCCcceeccCC-ccceeEEccCCceeEeecC
Confidence            5555 45899999999999999999999999999987654433 3467788899999965 5668899999999999999


Q ss_pred             CCCceeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCC-CCceeEecCCCCcEEEEecCCCeE
Q 018784          176 RSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWV  252 (350)
Q Consensus       176 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~sg~~d~~i  252 (350)
                      ++++++.++.. .+.|..+.|++++.+|+++ .|..++++|+|+.+.+..+..+. ......+.|-...+|.+|+.|+.|
T Consensus       252 rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv  331 (464)
T KOG0284|consen  252 RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV  331 (464)
T ss_pred             CCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCce
Confidence            99999999875 5789999999999988765 58899999999877776665443 345666788888999999999999


Q ss_pred             EEEEcccCeeEEee-cCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          253 HVFDFHTGEQIGCN-KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       253 ~v~d~~~~~~~~~~-~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      ..|.+...+++..+ .+|...|++|+|+|-|.+|++|+.|.++++|...
T Consensus       332 vh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  332 VHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             EEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            99999855555444 5899999999999999999999999999999764

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.9e-39  Score=260.87  Aligned_cols=250  Identities=28%  Similarity=0.381  Sum_probs=213.0

Q ss_pred             ccccceeE-eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCC
Q 018784            4 RKVAVPLV-CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD   82 (350)
Q Consensus         4 ~~~~~~~~-~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D   82 (350)
                      -++.+|.. +.||+..|..+..++   ||.+.+++|.|+++|+||+++++....|.||+..|.+++|++|.+.++|||.|
T Consensus        50 ~~~G~~~r~~~GHsH~v~dv~~s~---dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrD  126 (315)
T KOG0279|consen   50 IKYGVPVRRLTGHSHFVSDVVLSS---DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRD  126 (315)
T ss_pred             cccCceeeeeeccceEecceEEcc---CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCc
Confidence            45666665 579999999998876   99999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEeeCCCCCeeeeee--ccccEeEEEEcCC--CCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCC
Q 018784           83 FTAKLWDALTGDEKHSFE--HKHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ  158 (350)
Q Consensus        83 g~v~vWd~~~~~~~~~~~--h~~~V~~~~~~~~--~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (350)
                      .+|++|+...........  +++.|.|+.|+|+  ..+|+++|+|++||+||+...+..... ..|.+.+..++++| |+
T Consensus       127 kTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~-~gh~~~v~t~~vSp-DG  204 (315)
T KOG0279|consen  127 KTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF-IGHSGYVNTVTVSP-DG  204 (315)
T ss_pred             ceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc-ccccccEEEEEECC-CC
Confidence            999999986554333333  3788999999998  689999999999999999876554333 45788999999875 77


Q ss_pred             cEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCC--------CC
Q 018784          159 TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPC--------NT  230 (350)
Q Consensus       159 ~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~--------~~  230 (350)
                      .++++|+.||.+.+||++.++.+..+.+...|.+++|+|+..+|+.+.+..|+|||+.+..++..+....        .+
T Consensus       205 slcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~  284 (315)
T KOG0279|consen  205 SLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDP  284 (315)
T ss_pred             CEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCc
Confidence            8899999999999999999999999999999999999999999999988899999999988776655422        12


Q ss_pred             ceeEe-cCCCCcEEEEecCCCeEEEEEcc
Q 018784          231 ESASL-EPKLGNIFIAGGEDMWVHVFDFH  258 (350)
Q Consensus       231 ~~~~~-~~~~~~~l~sg~~d~~i~v~d~~  258 (350)
                      .+.++ ...+|..|.+|..|+.|++|.+.
T Consensus       285 ~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  285 ICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            22222 23468999999999999999864

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-39  Score=261.20  Aligned_cols=289  Identities=30%  Similarity=0.601  Sum_probs=245.0

Q ss_pred             ceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEE
Q 018784            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (350)
Q Consensus         8 ~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~v   87 (350)
                      +|+.++||+.|++-+.|+.   +|.+|.|++.|.++.+|-..+|+.+.+++||+++|+++.++.+...++||+.|.++++
T Consensus         2 rpi~l~GHERplTqiKyN~---eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kL   78 (327)
T KOG0643|consen    2 RPILLQGHERPLTQIKYNR---EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKL   78 (327)
T ss_pred             CccccccCccccceEEecC---CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEE
Confidence            5788999999999999996   9999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCeeeeeeccccEeEEEEcCCCCeEEEee-----CCCeEEEEECCCCC------CCCeeecCCCCcEEEEEEeCC
Q 018784           88 WDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGG-----FEKILRIFDLNRPD------APPREVGNSSGSIRTVAWLHS  156 (350)
Q Consensus        88 Wd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~-----~d~~v~vwd~~~~~------~~~~~~~~~~~~v~~~~~~~~  156 (350)
                      ||+++|+++..+.-+..|+.+.|+++|++++...     ..+.|.++|+....      .+...+..+...++.+.|.+-
T Consensus        79 WDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l  158 (327)
T KOG0643|consen   79 WDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL  158 (327)
T ss_pred             EEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeeccc
Confidence            9999999999999999999999999999887654     34679999987432      223334556678888889865


Q ss_pred             CCcEEEEEeCCCeEEEEECCCCceeEee-c-CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCCcee
Q 018784          157 DQTILSSCTDSGGVRLWDARSGKIVQTL-E-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESA  233 (350)
Q Consensus       157 ~~~~~~s~~~dg~i~iwd~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~  233 (350)
                       +..+++|.+||.|..||+++|+.+... + +...|+.++++++..+++++ .|.+-++||.++..+++++.......+.
T Consensus       159 -~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~a  237 (327)
T KOG0643|consen  159 -GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTA  237 (327)
T ss_pred             -CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccce
Confidence             456778999999999999998654433 3 45689999999999887765 5889999999999999999988888888


Q ss_pred             EecCCCCcEEEEecCCCe-------------EEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          234 SLEPKLGNIFIAGGEDMW-------------VHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       234 ~~~~~~~~~l~sg~~d~~-------------i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      .+.|....+++-|+++..             -+.|++-..+++...++|-++|++++|+|+|+.++||++||.|++.-.+
T Consensus       238 aisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  238 AISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             ecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence            888877777777776532             2344444445667789999999999999999999999999999998543

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=4.5e-38  Score=263.64  Aligned_cols=292  Identities=20%  Similarity=0.321  Sum_probs=245.0

Q ss_pred             EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~   90 (350)
                      |+.||.+=|.++++.|   ....++|||.|++++|||+.+|++..+|.||...|+.+++++...++++++.|+.|+.||+
T Consensus       146 Vi~gHlgWVr~vavdP---~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL  222 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDP---GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL  222 (460)
T ss_pred             hhhhccceEEEEeeCC---CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence            4589999999999987   5679999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeee-eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe
Q 018784           91 LTGDEKH-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (350)
Q Consensus        91 ~~~~~~~-~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~  169 (350)
                      +.++.++ +..|-..|+|++.+|.-..|++|+.|.++||||+.+... ...+.+|...|..+.+.+.+. .+++|+.|++
T Consensus       223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~-V~~l~GH~~~V~~V~~~~~dp-qvit~S~D~t  300 (460)
T KOG0285|consen  223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS-VHVLSGHTNPVASVMCQPTDP-QVITGSHDST  300 (460)
T ss_pred             hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce-EEEecCCCCcceeEEeecCCC-ceEEecCCce
Confidence            9887554 557999999999999999999999999999999986543 445577899999998876555 4678999999


Q ss_pred             EEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecC
Q 018784          170 VRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE  248 (350)
Q Consensus       170 i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~  248 (350)
                      |++||++.|+.+.++.++ ..+.+++.+|....+++++-..|+-|++..+..+..+..+.. ....+......++++|+.
T Consensus       301 vrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~-iintl~~nsD~v~~~G~d  379 (460)
T KOG0285|consen  301 VRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNA-IINTLSVNSDGVLVSGGD  379 (460)
T ss_pred             EEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccc-eeeeeeeccCceEEEcCC
Confidence            999999999988888754 578999999999999888888999999988776665444332 222333334689999999


Q ss_pred             CCeEEEEEcccCeeEEeec-----C---CCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCC
Q 018784          249 DMWVHVFDFHTGEQIGCNK-----G---HHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENH  308 (350)
Q Consensus       249 d~~i~v~d~~~~~~~~~~~-----~---h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~  308 (350)
                      .+.|..||.++|-.....+     |   -+..|++.+|-..|..|++|..|.+|++|.-+...-.|.|
T Consensus       380 ng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~aT~Eth  447 (460)
T KOG0285|consen  380 NGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHATEETH  447 (460)
T ss_pred             ceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccccCcccC
Confidence            9999999999886543321     1   2456899999999999999999999999976544444444

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.2e-39  Score=276.63  Aligned_cols=243  Identities=22%  Similarity=0.301  Sum_probs=214.0

Q ss_pred             eEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (350)
Q Consensus        10 ~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd   89 (350)
                      .+++||+..|.++.|+|.. ++.-|||++.||+++||+.+...++..|+||...|-.++|+|+|++|+|++.|.+-|+||
T Consensus       211 ~~l~gH~~~v~~~~fhP~~-~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD  289 (459)
T KOG0272|consen  211 QTLRGHTSRVGAAVFHPVD-SDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWD  289 (459)
T ss_pred             EEEeccccceeeEEEccCC-CccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcc
Confidence            3468999999999999954 466899999999999999999899999999999999999999999999999999999999


Q ss_pred             CCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784           90 ALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (350)
Q Consensus        90 ~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg  168 (350)
                      +.++.+.... .|...|.+|+|+|||.+++|||.|..-||||+.++.....+ ..|...|.+++|+| .+..+++|+.|+
T Consensus       290 ~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L-~gH~k~I~~V~fsP-NGy~lATgs~Dn  367 (459)
T KOG0272|consen  290 LETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFL-AGHIKEILSVAFSP-NGYHLATGSSDN  367 (459)
T ss_pred             cccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEe-cccccceeeEeECC-CceEEeecCCCC
Confidence            9998866554 69999999999999999999999999999999988776555 44889999999986 567889999999


Q ss_pred             eEEEEECCCCceeEeecCC-CCeEEEEEec-CCcEEEEE-cCCcEEEEECCCcceeeeeecCCCC-ceeEecCCCCcEEE
Q 018784          169 GVRLWDARSGKIVQTLETK-SPVTSAEVSR-DGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFI  244 (350)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~-~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~  244 (350)
                      +++|||+|..+++.++..+ +-|+.++|.| .|++|+++ -|+++++|..+++.+++.+..+... .++...+ +++.++
T Consensus       368 t~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d~~~i~  446 (459)
T KOG0272|consen  368 TCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-DSQAIA  446 (459)
T ss_pred             cEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc-CCceEE
Confidence            9999999999988888765 5688999998 67777665 5999999999999999988776544 3444444 689999


Q ss_pred             EecCCCeEEEEE
Q 018784          245 AGGEDMWVHVFD  256 (350)
Q Consensus       245 sg~~d~~i~v~d  256 (350)
                      +++.|++|++|.
T Consensus       447 t~s~DRT~KLW~  458 (459)
T KOG0272|consen  447 TSSFDRTIKLWR  458 (459)
T ss_pred             EeccCceeeecc
Confidence            999999999994

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.7e-37  Score=280.47  Aligned_cols=335  Identities=26%  Similarity=0.397  Sum_probs=261.2

Q ss_pred             ccceeEe----eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCce--eeeccCccCCeEEEEECCCCcEEEEe
Q 018784            6 VAVPLVC----HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCCLDANALFSASG   79 (350)
Q Consensus         6 ~~~~~~~----~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~--~~~l~gH~~~V~~v~~~~~~~~l~s~   79 (350)
                      ...|++.    .||.+.|.++.|+.   |++++++||.|.++|||.+...+-  ...|.||++.|.++.|..+...+.|-
T Consensus       131 ~~~pFvl~r~~~g~fddi~si~Ws~---DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tv  207 (893)
T KOG0291|consen  131 EFNPFVLHRTYLGHFDDITSIDWSD---DSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTV  207 (893)
T ss_pred             ccCcceEeeeecCCccceeEEEecc---CCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEE
Confidence            4567775    49999999998886   999999999999999999876554  66889999999999999999999999


Q ss_pred             eCCCeEEEeeCCC-----------------------CCe-----------eeeeec-cccEeEEEEcCCCCeEEEeeCCC
Q 018784           80 SADFTAKLWDALT-----------------------GDE-----------KHSFEH-KHIVRACAFSEDTHLLLTGGFEK  124 (350)
Q Consensus        80 s~Dg~v~vWd~~~-----------------------~~~-----------~~~~~h-~~~V~~~~~~~~~~~l~sg~~d~  124 (350)
                      +.||.+.+|....                       +++           ++.++. ...|++++||+....|++|-..|
T Consensus       208 skdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG  287 (893)
T KOG0291|consen  208 SKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSG  287 (893)
T ss_pred             ecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCC
Confidence            9999999997651                       111           111111 14566666666666666666666


Q ss_pred             eEEEEECCC-------------------------------------------CCCCCeeecCCCCcEEEEEEeCCCCcEE
Q 018784          125 ILRIFDLNR-------------------------------------------PDAPPREVGNSSGSIRTVAWLHSDQTIL  161 (350)
Q Consensus       125 ~v~vwd~~~-------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~  161 (350)
                      ...+|.+..                                           ..-..+ .+.|...+.+++++| |+.++
T Consensus       288 ~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK-QQgH~~~i~~l~YSp-Dgq~i  365 (893)
T KOG0291|consen  288 EFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK-QQGHSDRITSLAYSP-DGQLI  365 (893)
T ss_pred             eeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee-ccccccceeeEEECC-CCcEE
Confidence            655555432                                           111111 245778899999885 56688


Q ss_pred             EEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCCceeEec-CC
Q 018784          162 SSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLE-PK  238 (350)
Q Consensus       162 ~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~  238 (350)
                      ++|++||+|++||..++-|+.++.. .+.++.++|+..++.+.++ -||+||.||+..++..++++.|......++. .+
T Consensus       366 aTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~  445 (893)
T KOG0291|consen  366 ATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP  445 (893)
T ss_pred             EeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC
Confidence            8999999999999999999988875 5789999999999877655 5999999999999999999988765433322 23


Q ss_pred             CCcEEEEecCCCe-EEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCC--Ccc----------
Q 018784          239 LGNIFIAGGEDMW-VHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPP--NHE----------  305 (350)
Q Consensus       239 ~~~~l~sg~~d~~-i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~--~~~----------  305 (350)
                      .|.++++|+.|.. |++|++.+|+++..+.||++||.+++|+|++..|||||+|.+||+||+-..  ..+          
T Consensus       446 sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~  525 (893)
T KOG0291|consen  446 SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLA  525 (893)
T ss_pred             CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeE
Confidence            5899999999985 999999999999999999999999999999999999999999999997533  111          


Q ss_pred             --------cCCCCCCCccccccccccccceeeeeeEEEcccchhHhhh
Q 018784          306 --------ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKAEEKQ  345 (350)
Q Consensus       306 --------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~  345 (350)
                              +......+++...+......+...|+|......||.+.|-
T Consensus       526 vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~  573 (893)
T KOG0291|consen  526 VSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDR  573 (893)
T ss_pred             EEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccce
Confidence                    1111223455556666666788889999999999888775

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.9e-37  Score=260.54  Aligned_cols=287  Identities=15%  Similarity=0.251  Sum_probs=239.1

Q ss_pred             cceeE-eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeE
Q 018784            7 AVPLV-CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (350)
Q Consensus         7 ~~~~~-~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v   85 (350)
                      +-+++ |.+|+++|.+++.+|   +..++|||+.|....||+..+|+++..+.||+.+|.++.|+.++.+||||+.+|.|
T Consensus        54 DdS~~tF~~H~~svFavsl~P---~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v  130 (399)
T KOG0296|consen   54 DDSLVTFDKHTDSVFAVSLHP---NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKV  130 (399)
T ss_pred             ccceeehhhcCCceEEEEeCC---CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccE
Confidence            44555 579999999999887   67799999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCCCeeeeee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEE
Q 018784           86 KLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (350)
Q Consensus        86 ~vWd~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~  164 (350)
                      +||+..++..+..+. --+.+..+.|||-+.+|+.|+.||.+.+|.+.+. ...+....|...+.+=.|.|+ ++.++++
T Consensus       131 ~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pd-GKr~~tg  208 (399)
T KOG0296|consen  131 LVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPD-GKRILTG  208 (399)
T ss_pred             EEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccCC-CceEEEE
Confidence            999999999888875 4456888999999999999999999999999865 344555668888888888865 6777889


Q ss_pred             eCCCeEEEEECCCCceeEeecCC----------C-------------CeE-------EEEEecCC---------------
Q 018784          165 TDSGGVRLWDARSGKIVQTLETK----------S-------------PVT-------SAEVSRDG---------------  199 (350)
Q Consensus       165 ~~dg~i~iwd~~~~~~~~~~~~~----------~-------------~v~-------~~~~~~~~---------------  199 (350)
                      ..||+|++||+.+++++..+...          +             .+.       .+.+..++               
T Consensus       209 y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es  288 (399)
T KOG0296|consen  209 YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES  288 (399)
T ss_pred             ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence            99999999999999988777510          0             000       00111110               


Q ss_pred             ----------cEEEEE-cCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecC
Q 018784          200 ----------RYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG  268 (350)
Q Consensus       200 ----------~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~  268 (350)
                                .+++++ -||+|-+||+.+..+......+.....+.+.+  ..+|++++.+|.|+.||.++|++..++.|
T Consensus       289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~G  366 (399)
T KOG0296|consen  289 VESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTG  366 (399)
T ss_pred             hhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEec
Confidence                      122333 48999999998877766666666666666665  57899999999999999999999999999


Q ss_pred             CCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          269 HHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       269 h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      |...|.+++++|+.++++|+|.|++.+|+++.
T Consensus       367 H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  367 HQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            99999999999999999999999999999763

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=3.2e-39  Score=279.97  Aligned_cols=289  Identities=22%  Similarity=0.374  Sum_probs=242.5

Q ss_pred             cccceeE----eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC-CceeeeccCccCCeEEEEECCCCcEEEEe
Q 018784            5 KVAVPLV----CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIGTFEGHKGAVWSCCLDANALFSASG   79 (350)
Q Consensus         5 ~~~~~~~----~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~-~~~~~~l~gH~~~V~~v~~~~~~~~l~s~   79 (350)
                      +|++|..    ++||+..|+++.|.|.  .+++|++++.|+.|+||++.. ++++++|.||..+|..++|+.+|..+.|+
T Consensus       199 rc~~Pkk~~~~~~gH~kgvsai~~fp~--~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~  276 (503)
T KOG0282|consen  199 RCYLPKKLSHNLSGHTKGVSAIQWFPK--KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSA  276 (503)
T ss_pred             eeeccHhheeeccCCccccchhhhccc--eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeee
Confidence            5556654    3799999999998873  578999999999999999866 99999999999999999999999999999


Q ss_pred             eCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCC
Q 018784           80 SADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ  158 (350)
Q Consensus        80 s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (350)
                      |.|+.|++||+++|++...+.-...+.|+.|+|++ +.+++|+.|+.|+.||++.++. ......|-+.|..+.|.+ ++
T Consensus       277 sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv-vqeYd~hLg~i~~i~F~~-~g  354 (503)
T KOG0282|consen  277 SFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV-VQEYDRHLGAILDITFVD-EG  354 (503)
T ss_pred             ecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH-HHHHHhhhhheeeeEEcc-CC
Confidence            99999999999999999999888889999999998 8899999999999999987663 445577888999999986 45


Q ss_pred             cEEEEEeCCCeEEEEECCCCceeEeecCC--CCeEEEEEecCCcEEEEE-cCCcEEEEECCCc------ceeeeeecCCC
Q 018784          159 TILSSCTDSGGVRLWDARSGKIVQTLETK--SPVTSAEVSRDGRYITTA-DGSSVKFWDANHF------GLVKGYNMPCN  229 (350)
Q Consensus       159 ~~~~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~------~~~~~~~~~~~  229 (350)
                      +.+++.++|++++||+.+.+..+..+...  ....++..+|++.++++- -+..|.++.+...      +....+..+..
T Consensus       355 ~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGy  434 (503)
T KOG0282|consen  355 RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGY  434 (503)
T ss_pred             ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCc
Confidence            56677899999999999988766555432  345678889999998774 4778888875431      12222333333


Q ss_pred             CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCC-CEEEEecCCCcEEEec
Q 018784          230 TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGG-ESYASGSEDGTIRIWQ  298 (350)
Q Consensus       230 ~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~-~~lasgs~Dg~v~vw~  298 (350)
                      ...+.|+| +|++|++|..||.+.+||.++-+++..+++|..++..+.|+|.. ..+||++.||.|++|+
T Consensus       435 s~~v~fSp-DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  435 SCQVDFSP-DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eeeEEEcC-CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            44555665 69999999999999999999999999999999999999999985 4589999999999996

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.4e-38  Score=264.83  Aligned_cols=282  Identities=22%  Similarity=0.349  Sum_probs=243.4

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      +-||..+|+-+.|+|   +-.+++++|.|.+|++||..+|++...|+||+++|..++|+..|+++||+|.|-.+++||..
T Consensus       104 l~g~r~~vt~v~~hp---~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~  180 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFHP---SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD  180 (406)
T ss_pred             hhccccceeeeeecc---CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH
Confidence            458999999999998   55589999999999999999999999999999999999999999999999999999999987


Q ss_pred             CC-Cee-eeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe
Q 018784           92 TG-DEK-HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (350)
Q Consensus        92 ~~-~~~-~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~  169 (350)
                      +. +++ ....|...|.++.|-|.|.++++++.|.+|++|++.++.... ...+|...+..+... .|+.++++|+.|.+
T Consensus       181 ~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~-t~~~h~ewvr~v~v~-~DGti~As~s~dqt  258 (406)
T KOG0295|consen  181 TFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVK-TFPGHSEWVRMVRVN-QDGTIIASCSNDQT  258 (406)
T ss_pred             HHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEE-eccCchHhEEEEEec-CCeeEEEecCCCce
Confidence            63 232 334788899999999999999999999999999999876643 445677788888754 68899999999999


Q ss_pred             EEEEECCCCceeEeecC-CCCeEEEEEecC---------------CcEEEE-EcCCcEEEEECCCcceeeeeecCCCCce
Q 018784          170 VRLWDARSGKIVQTLET-KSPVTSAEVSRD---------------GRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTES  232 (350)
Q Consensus       170 i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~---------------~~~l~~-~~~~~i~vwd~~~~~~~~~~~~~~~~~~  232 (350)
                      |++|-+.++++...+.. ..++..++|.|.               +.++.+ +.|++|++||+.++.++.++..+.+-..
T Consensus       259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr  338 (406)
T KOG0295|consen  259 LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR  338 (406)
T ss_pred             EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence            99999999977666653 457777777652               135544 4689999999999999988887766544


Q ss_pred             -eEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       233 -~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                       +.+.| .|+|++++..|+++++||++++++..++..|+.-|+++.|+.+..+++||+-|.++++|..
T Consensus       339 ~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  339 GVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             eeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence             44554 6999999999999999999999999999999999999999999999999999999999964

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=5.1e-37  Score=251.91  Aligned_cols=286  Identities=24%  Similarity=0.343  Sum_probs=235.0

Q ss_pred             ccceeE-eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCC-CCceeeeccCccCCeEEEEECCCCcEEEEeeCCC
Q 018784            6 VAVPLV-CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE-TGDWIGTFEGHKGAVWSCCLDANALFSASGSADF   83 (350)
Q Consensus         6 ~~~~~~-~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~-~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg   83 (350)
                      +..|+. +.||++.|+.+.|+|   +|.++|||+.|..|.+|+.. ..+-...++||+++|..+.+..++..++|+|.|.
T Consensus        36 l~ap~m~l~gh~geI~~~~F~P---~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk  112 (338)
T KOG0265|consen   36 LQAPIMLLPGHKGEIYTIKFHP---DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDK  112 (338)
T ss_pred             ccchhhhcCCCcceEEEEEECC---CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCc
Confidence            444544 369999999999997   99999999999999999953 3444567889999999999999999999999999


Q ss_pred             eEEEeeCCCCCeeeee-eccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEE
Q 018784           84 TAKLWDALTGDEKHSF-EHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL  161 (350)
Q Consensus        84 ~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  161 (350)
                      +|+.||.++++....+ .|...|+++.-+.-| .++.+++.|+++|+||+++......  ...+-.++++.|.. ....+
T Consensus       113 ~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t--~~~kyqltAv~f~d-~s~qv  189 (338)
T KOG0265|consen  113 TVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT--FENKYQLTAVGFKD-TSDQV  189 (338)
T ss_pred             eEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc--cccceeEEEEEecc-cccce
Confidence            9999999999987776 588899998855444 5667899999999999986544322  22355788999874 44456


Q ss_pred             EEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEE-cCCcEEEEECCCcc----eeeeeecCC-----CC
Q 018784          162 SSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFG----LVKGYNMPC-----NT  230 (350)
Q Consensus       162 ~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~----~~~~~~~~~-----~~  230 (350)
                      .+|+-|+.|++||++.+.....+.++ .+|+.+..+++|.++.+- -+.++++||.+-+.    +++-+....     +.
T Consensus       190 ~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl  269 (338)
T KOG0265|consen  190 ISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL  269 (338)
T ss_pred             eeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence            78889999999999999999988865 689999999999887654 48899999998653    344333322     23


Q ss_pred             ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          231 ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       231 ~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      ..+++.| ++..+.+|+.|+.+++||......+..+.||.+.|.++.|+|..++|.+++.|.+|++=.
T Consensus       270 L~cswsp-~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  270 LKCSWSP-NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             ceeeccC-CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            3455555 478889999999999999999899999999999999999999999999999999998843

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.2e-37  Score=284.01  Aligned_cols=282  Identities=29%  Similarity=0.436  Sum_probs=240.9

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc--eeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC-
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA-   90 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~--~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~-   90 (350)
                      -|...|.++.|++   +|+++++++.|+.+++|+.++.+  .+.++.+|...|..++|+++++++++++.|++|||||+ 
T Consensus       157 ~~~~sv~~~~fs~---~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  157 HECPSVTCVDFSP---DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK  233 (456)
T ss_pred             cccCceEEEEEcC---CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence            3488999998886   99999999999999999998888  78888999999999999999999999999999999999 


Q ss_pred             CCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe
Q 018784           91 LTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (350)
Q Consensus        91 ~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~  169 (350)
                      ..+....++ .|...|++++|+|+++++++|+.|++|++||+..++. ...+..|...|..++|.+ ++.++++++.|+.
T Consensus       234 ~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~-~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~  311 (456)
T KOG0266|consen  234 DDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC-VRKLKGHSDGISGLAFSP-DGNLLVSASYDGT  311 (456)
T ss_pred             CCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE-EEeeeccCCceEEEEECC-CCCEEEEcCCCcc
Confidence            444666666 6999999999999999999999999999999987443 455677888999999875 5566777788999


Q ss_pred             EEEEECCCCc--eeEeecCC--C-CeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCCceeE---ecCCCC
Q 018784          170 VRLWDARSGK--IVQTLETK--S-PVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESAS---LEPKLG  240 (350)
Q Consensus       170 i~iwd~~~~~--~~~~~~~~--~-~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~  240 (350)
                      |++||+.++.  ++..+...  . ++..++|+|+++++.++ .|+.+++||++....+..+..+.....+.   .....+
T Consensus       312 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (456)
T KOG0266|consen  312 IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGG  391 (456)
T ss_pred             EEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCC
Confidence            9999999998  45555432  2 68999999999988766 46799999999988887776655432222   223468


Q ss_pred             cEEEEecCCCeEEEEEcccCeeEEeecCC-CcCEEEEEEcCCCCEEEEec--CCCcEEEecCC
Q 018784          241 NIFIAGGEDMWVHVFDFHTGEQIGCNKGH-HGPVHCVRFSPGGESYASGS--EDGTIRIWQTN  300 (350)
Q Consensus       241 ~~l~sg~~d~~i~v~d~~~~~~~~~~~~h-~~~v~~l~~sp~~~~lasgs--~Dg~v~vw~~~  300 (350)
                      .++++|+.|+.|++||+.++..+..+.+| ...+..++++|...++++++  .|+.|++|..+
T Consensus       392 ~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  392 KLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             CeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            99999999999999999999999999999 88999999999999999988  79999999754

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.1e-35  Score=259.43  Aligned_cols=281  Identities=32%  Similarity=0.551  Sum_probs=238.7

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      +++|.++|.++.|+|   ++.+|++++.|+.+++|+..+++....+.+|...+..+.+.+++.++++++.||.|++|+..
T Consensus         5 ~~~h~~~i~~~~~~~---~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           5 LKGHTGGVTCVAFSP---DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             hcccCCCEEEEEEcC---CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            479999999999987   88999999999999999999998888999999999999999999999999999999999998


Q ss_pred             CCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784           92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (350)
Q Consensus        92 ~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i  170 (350)
                      +++....+ .|...+.++.|+|++.++++++.|+.+++||+.+.... .....|...+.++.|.+. +.++++++.|+.|
T Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i  159 (289)
T cd00200          82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL-TTLRGHTDWVNSVAFSPD-GTFVASSSQDGTI  159 (289)
T ss_pred             cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEE-EEeccCCCcEEEEEEcCc-CCEEEEEcCCCcE
Confidence            86655554 47778999999999999998888999999999754332 333457778999998865 6677777778999


Q ss_pred             EEEECCCCceeEeecCC-CCeEEEEEecCCcEE-EEEcCCcEEEEECCCcceeeeeecCC-CCceeEecCCCCcEEEEec
Q 018784          171 RLWDARSGKIVQTLETK-SPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGG  247 (350)
Q Consensus       171 ~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l-~~~~~~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~sg~  247 (350)
                      ++||+++++.+..+..+ ..+..+.++|+++.+ +++.++.|++||++....+..+..+. ....+.+.+. +.++++++
T Consensus       160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~  238 (289)
T cd00200         160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASGS  238 (289)
T ss_pred             EEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCC-CcEEEEEc
Confidence            99999988887777654 489999999999655 45568999999999877776663332 3445556554 78888888


Q ss_pred             CCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          248 EDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       248 ~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      .|+.|++||+.+++....+..|...|.+++|+|++++|++++.|+.|++|+
T Consensus       239 ~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         239 EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            899999999999998888889999999999999999999999999999996

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.8e-35  Score=257.82  Aligned_cols=306  Identities=21%  Similarity=0.282  Sum_probs=237.5

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeecc---CccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE---GHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~---gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd   89 (350)
                      +.|+..|.++.|+|   ||.++||++.|+++.|||..+|+.+..|+   +|+++|++++|+||+..++|+|.|.++||||
T Consensus       187 r~HskFV~~VRysP---DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd  263 (603)
T KOG0318|consen  187 REHSKFVNCVRYSP---DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD  263 (603)
T ss_pred             cccccceeeEEECC---CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence            68999999999997   99999999999999999999999999998   8999999999999999999999999999999


Q ss_pred             CCCCCeeeee--------------------------------------------eccccEeEEEEcCCCCeEEEeeCCCe
Q 018784           90 ALTGDEKHSF--------------------------------------------EHKHIVRACAFSEDTHLLLTGGFEKI  125 (350)
Q Consensus        90 ~~~~~~~~~~--------------------------------------------~h~~~V~~~~~~~~~~~l~sg~~d~~  125 (350)
                      +.+++...++                                            .|...|+++..+|++++|++|+.||.
T Consensus       264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~  343 (603)
T KOG0318|consen  264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH  343 (603)
T ss_pred             eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce
Confidence            8766542221                                            17889999999999999999999999


Q ss_pred             EEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEe--ecCCCCeEEEEEecCCcEEE
Q 018784          126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQT--LETKSPVTSAEVSRDGRYIT  203 (350)
Q Consensus       126 v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~  203 (350)
                      |.-|+..++..-...-..|...|..++....+  .+.+++.|.++++.++........  .+...+...++..+++.+++
T Consensus       344 I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av  421 (603)
T KOG0318|consen  344 INSWDSGSGTSDRLAGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV  421 (603)
T ss_pred             EEEEecCCccccccccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence            99999987765544446788899998865433  366778888999998865433222  23333344788888876666


Q ss_pred             EEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCee--EEeecCCCcCEEEEEEcCC
Q 018784          204 TADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ--IGCNKGHHGPVHCVRFSPG  281 (350)
Q Consensus       204 ~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~--~~~~~~h~~~v~~l~~sp~  281 (350)
                      ......|.+..-.+.  +......-......+++ ++..+++|++|++|++|.+..+..  ...+..|.++|++++||||
T Consensus       422 v~~~~~iv~l~~~~~--~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd  498 (603)
T KOG0318|consen  422 VACISDIVLLQDQTK--VSSIPIGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPD  498 (603)
T ss_pred             EEecCcEEEEecCCc--ceeeccccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCC
Confidence            665555555542221  11111112233444444 689999999999999999986553  3456789999999999999


Q ss_pred             CCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccch
Q 018784          282 GESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGK  340 (350)
Q Consensus       282 ~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~  340 (350)
                      +.|||+|...+.|.+|++...+..              .....-++++|.++.|+|+-+
T Consensus       499 ~~yla~~Da~rkvv~yd~~s~~~~--------------~~~w~FHtakI~~~aWsP~n~  543 (603)
T KOG0318|consen  499 GAYLAAGDASRKVVLYDVASREVK--------------TNRWAFHTAKINCVAWSPNNK  543 (603)
T ss_pred             CcEEEEeccCCcEEEEEcccCcee--------------cceeeeeeeeEEEEEeCCCce
Confidence            999999999999999998654320              111234788899999988865

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=4e-38  Score=263.12  Aligned_cols=277  Identities=19%  Similarity=0.329  Sum_probs=226.3

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCC
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG   93 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~   93 (350)
                      ...+.|+|+.|.    |+ .+++|..|++|+|||..+.++++.|.||+++|.|+.+.  .++++|||.|.+|+|||.+++
T Consensus       195 e~skgVYClQYD----D~-kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg  267 (499)
T KOG0281|consen  195 ENSKGVYCLQYD----DE-KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG  267 (499)
T ss_pred             ccCCceEEEEec----ch-hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCC
Confidence            357789999986    33 67999999999999999999999999999999888874  559999999999999999999


Q ss_pred             Ceeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC--eeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784           94 DEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--REVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (350)
Q Consensus        94 ~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i  170 (350)
                      +++.++ .|...|..+.|+  ..++++++.|.++++||+..+....  ..+.+|...|..+.|.   .+++++++.|++|
T Consensus       268 e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTi  342 (499)
T KOG0281|consen  268 EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTI  342 (499)
T ss_pred             chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceE
Confidence            988775 688999999998  4589999999999999998765321  2345788889888874   4589999999999


Q ss_pred             EEEECCCCceeEeecCCC-CeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCC-ceeEecCCCCcEEEEec
Q 018784          171 RLWDARSGKIVQTLETKS-PVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIAGG  247 (350)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~sg~  247 (350)
                      ++|++.+++.+.++..+. .|.++  ...+++++++ +|.+||+||+..+.+++.+..+... .++-|   +.+.+++|+
T Consensus       343 kvW~~st~efvRtl~gHkRGIACl--QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF---d~krIVSGa  417 (499)
T KOG0281|consen  343 KVWSTSTCEFVRTLNGHKRGIACL--QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGA  417 (499)
T ss_pred             EEEeccceeeehhhhcccccceeh--hccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee---cCceeeecc
Confidence            999999999999998764 44333  3467887765 5889999999999988877665433 23333   357899999


Q ss_pred             CCCeEEEEEcccCee---------EEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCC
Q 018784          248 EDMWVHVFDFHTGEQ---------IGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHS  309 (350)
Q Consensus       248 ~d~~i~v~d~~~~~~---------~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~  309 (350)
                      .||+|++||+..+..         +.++..|++.|..+.|  |...+++++.|.+|.|||.......+...
T Consensus       418 YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~~~~~  486 (499)
T KOG0281|consen  418 YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPSAAEE  486 (499)
T ss_pred             ccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcccccc
Confidence            999999999987643         3455679999999999  55678999999999999987665554443

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1e-35  Score=241.13  Aligned_cols=280  Identities=21%  Similarity=0.341  Sum_probs=219.3

Q ss_pred             EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC---Cceeeec-cCccCCeEEEEECCCCcEEEEeeCCCeEE
Q 018784           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET---GDWIGTF-EGHKGAVWSCCLDANALFSASGSADFTAK   86 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~---~~~~~~l-~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~   86 (350)
                      .+.||++.++.++++|..  |.+|||+|.|+.||||+...   ..+...| ++|+..|++++|+|.|++||+||.|.++-
T Consensus         9 ~~~gh~~r~W~~awhp~~--g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~   86 (312)
T KOG0645|consen    9 KLSGHKDRVWSVAWHPGK--GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV   86 (312)
T ss_pred             eecCCCCcEEEEEeccCC--ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence            358999999999999832  77999999999999999873   5566666 47999999999999999999999999999


Q ss_pred             EeeCCCCC--eeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCC--CCeeecCCCCcEEEEEEeCCCCcEE
Q 018784           87 LWDALTGD--EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA--PPREVGNSSGSIRTVAWLHSDQTIL  161 (350)
Q Consensus        87 vWd~~~~~--~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~  161 (350)
                      ||.-..++  +..++ .|.+.|.+++|+++|.+|||++.|+.|-||.+.....  ....+..|...|..+.|.| ..-+|
T Consensus        87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL  165 (312)
T KOG0645|consen   87 IWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLL  165 (312)
T ss_pred             EeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-Cccee
Confidence            99876443  55555 5999999999999999999999999999999873321  1234567888888888864 56688


Q ss_pred             EEEeCCCeEEEEECCC---CceeEeecCC-CCeEEEEEecCCcEE-EEEcCCcEEEEECCCcceeeeeecCCCCceeEec
Q 018784          162 SSCTDSGGVRLWDARS---GKIVQTLETK-SPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMPCNTESASLE  236 (350)
Q Consensus       162 ~s~~~dg~i~iwd~~~---~~~~~~~~~~-~~v~~~~~~~~~~~l-~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  236 (350)
                      ++|+.|++|++|+-..   -++++++..+ +.+.+++|.+.|..| .+++|++++||-..+.-.   .........+.+.
T Consensus       166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~---~~~sr~~Y~v~W~  242 (312)
T KOG0645|consen  166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS---GMHSRALYDVPWD  242 (312)
T ss_pred             EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc---hhcccceEeeeec
Confidence            9999999999998662   2578888765 489999999999555 556789999997542100   0001112223333


Q ss_pred             CCCCcEEEEecCCCeEEEEEcccCe------eEE-eecCCCcCEEEEEEcCC-CCEEEEecCCCcEEEecC
Q 018784          237 PKLGNIFIAGGEDMWVHVFDFHTGE------QIG-CNKGHHGPVHCVRFSPG-GESYASGSEDGTIRIWQT  299 (350)
Q Consensus       237 ~~~~~~l~sg~~d~~i~v~d~~~~~------~~~-~~~~h~~~v~~l~~sp~-~~~lasgs~Dg~v~vw~~  299 (350)
                         ...+++++.|+.|++|.....-      .+. .-..|...|+++.|.|. ...|++||.||.|++|.+
T Consensus       243 ---~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l  310 (312)
T KOG0645|consen  243 ---NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL  310 (312)
T ss_pred             ---ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence               4689999999999999865421      111 23468889999999995 678999999999999976

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.3e-35  Score=242.79  Aligned_cols=270  Identities=21%  Similarity=0.369  Sum_probs=227.2

Q ss_pred             eeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEECC
Q 018784           54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLN  132 (350)
Q Consensus        54 ~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~  132 (350)
                      .++|+||.+.|+++.|++|.+.++|+|.||.+.|||..+....+.+. ....|..++|+|.++++|+|+-|+...||++.
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls  127 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS  127 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence            37899999999999999999999999999999999998877766665 44579999999999999999999999999997


Q ss_pred             CCC-----CCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEec-CCcEEEE-
Q 018784          133 RPD-----APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSR-DGRYITT-  204 (350)
Q Consensus       133 ~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~-~~~~l~~-  204 (350)
                      ..+     ...+.+..|.+-+.++.|.+ ++ .+++++.|.++-+||+++++.+..+..+ ..|.++.+.| +++.+++ 
T Consensus       128 ~~d~~g~~~v~r~l~gHtgylScC~f~d-D~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg  205 (343)
T KOG0286|consen  128 TRDAEGNVRVSRELAGHTGYLSCCRFLD-DN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSG  205 (343)
T ss_pred             cccccccceeeeeecCccceeEEEEEcC-CC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEec
Confidence            441     22345678999999999986 33 4667888999999999999999998865 6799999999 7776655 


Q ss_pred             EcCCcEEEEECCCcceeeeeecCCC-CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecC--CCcCEEEEEEcCC
Q 018784          205 ADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG--HHGPVHCVRFSPG  281 (350)
Q Consensus       205 ~~~~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~--h~~~v~~l~~sp~  281 (350)
                      +.|+..++||+|...++++|..+.. ...+.|+| +|.-|++|+.|++.++||++..+++..+..  -..+|++++||..
T Consensus       206 ~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S  284 (343)
T KOG0286|consen  206 GCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS  284 (343)
T ss_pred             ccccceeeeeccCcceeEeecccccccceEEEcc-CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc
Confidence            5689999999999999999887654 45667776 588999999999999999999888877763  2357999999999


Q ss_pred             CCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccchh
Q 018784          282 GESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKA  341 (350)
Q Consensus       282 ~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~  341 (350)
                      |++|.+|..|..+.+||.-..+......               .+.-+|.++..+|||-.
T Consensus       285 GRlLfagy~d~~c~vWDtlk~e~vg~L~---------------GHeNRvScl~~s~DG~a  329 (343)
T KOG0286|consen  285 GRLLFAGYDDFTCNVWDTLKGERVGVLA---------------GHENRVSCLGVSPDGMA  329 (343)
T ss_pred             ccEEEeeecCCceeEeeccccceEEEee---------------ccCCeeEEEEECCCCcE
Confidence            9999999999999999987665544443               45556788888888854

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.1e-36  Score=278.47  Aligned_cols=253  Identities=25%  Similarity=0.410  Sum_probs=216.7

Q ss_pred             cceeEe----eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC-------------------------------
Q 018784            7 AVPLVC----HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-------------------------------   51 (350)
Q Consensus         7 ~~~~~~----~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~-------------------------------   51 (350)
                      .+|-+|    ..-...++|..|++   |+++||.|-.|..|++|.+...                               
T Consensus       365 ~lpSic~YT~~nt~~~v~ca~fSd---dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~  441 (707)
T KOG0263|consen  365 SLPSICMYTFHNTYQGVTCAEFSD---DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS  441 (707)
T ss_pred             CCCcEEEEEEEEcCCcceeEeecC---CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence            345554    33345688888876   9999999999999999997621                               


Q ss_pred             ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEE
Q 018784           52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFD  130 (350)
Q Consensus        52 ~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd  130 (350)
                      ...++|-||+++|+.+.|+|+.++|+|+|.|++||+|.+.+..+...+ .|..+|+.+.|+|.|.++||+|.|++.++|.
T Consensus       442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs  521 (707)
T KOG0263|consen  442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWS  521 (707)
T ss_pred             ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeee
Confidence            123467899999999999999999999999999999999998877665 6999999999999999999999999999999


Q ss_pred             CCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEEcCCc
Q 018784          131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSS  209 (350)
Q Consensus       131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~  209 (350)
                      ... ..+.+....|-+.|.++.|. |+..++++|+.|.+||+||+.+|..++.+.+ ..+|.+++|+|+|          
T Consensus       522 ~d~-~~PlRifaghlsDV~cv~FH-PNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~G----------  589 (707)
T KOG0263|consen  522 TDH-NKPLRIFAGHLSDVDCVSFH-PNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCG----------  589 (707)
T ss_pred             ccc-CCchhhhcccccccceEEEC-CcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCC----------
Confidence            875 45566677888899999875 5677889999999999999999998888875 4789999998865          


Q ss_pred             EEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEec
Q 018784          210 VKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS  289 (350)
Q Consensus       210 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs  289 (350)
                                                     ++|++|+.|+.|.+||+.+++++..+.+|.+.|.+|.||.+|..||+||
T Consensus       590 -------------------------------r~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg  638 (707)
T KOG0263|consen  590 -------------------------------RYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGG  638 (707)
T ss_pred             -------------------------------ceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecC
Confidence                                           4556777788889999999999999999999999999999999999999


Q ss_pred             CCCcEEEecCCCCCcc
Q 018784          290 EDGTIRIWQTNPPNHE  305 (350)
Q Consensus       290 ~Dg~v~vw~~~~~~~~  305 (350)
                      .|.+|++||+......
T Consensus       639 ~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  639 ADNSVRLWDLTKVIEL  654 (707)
T ss_pred             CCCeEEEEEchhhccc
Confidence            9999999998765544

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.3e-36  Score=236.87  Aligned_cols=278  Identities=22%  Similarity=0.330  Sum_probs=234.5

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      +.+|.++|.++.|+.   ||+|.+++++|+++++|++..|.+++++.||...|.-++.+.|...+++++.|..|.+||++
T Consensus        13 l~~~qgaV~avryN~---dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~   89 (307)
T KOG0316|consen   13 LDCAQGAVRAVRYNV---DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN   89 (307)
T ss_pred             ecccccceEEEEEcc---CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence            578999999999997   99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC-eeecCCCCcEEEEEEeCCCCcEEEEEeCCCe
Q 018784           92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP-REVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (350)
Q Consensus        92 ~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~  169 (350)
                      +++..+.+ .|...|+.++|+.+...+++|+.|.++++||..+....+ ..+......|.++...   +..+++|+-||+
T Consensus        90 TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGt  166 (307)
T KOG0316|consen   90 TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGT  166 (307)
T ss_pred             cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCc
Confidence            99988887 599999999999999999999999999999987654333 3344556677787653   556889999999


Q ss_pred             EEEEECCCCceeEeecCCCCeEEEEEecCCcEE-EEEcCCcEEEEECCCcceeeeeecCCCCc---eeEecCCCCcEEEE
Q 018784          170 VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMPCNTE---SASLEPKLGNIFIA  245 (350)
Q Consensus       170 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~s  245 (350)
                      ++.||+|.|+.... ....||++++|+++++.. +++-++++++.|-.++++++.|..+.+..   .+.+. +....+++
T Consensus       167 vRtydiR~G~l~sD-y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~-qsdthV~s  244 (307)
T KOG0316|consen  167 VRTYDIRKGTLSSD-YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLN-QSDTHVFS  244 (307)
T ss_pred             EEEEEeecceeehh-hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeec-ccceeEEe
Confidence            99999999976432 345789999999999875 45568999999999999888877665432   22333 24578999


Q ss_pred             ecCCCeEEEEEcccCeeEEeecCCCcC-EEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          246 GGEDMWVHVFDFHTGEQIGCNKGHHGP-VHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       246 g~~d~~i~v~d~~~~~~~~~~~~h~~~-v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      |++||.+++||+.+...+..+..|... |.+++++|....|+++.. +.+.+|.
T Consensus       245 gSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~  297 (307)
T KOG0316|consen  245 GSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWY  297 (307)
T ss_pred             ccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceecee
Confidence            999999999999999999888888877 899999998766665543 3456663

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.1e-35  Score=269.60  Aligned_cols=294  Identities=20%  Similarity=0.304  Sum_probs=242.5

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCc--EEEEeeCCCeEEEeeCC
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL--FSASGSADFTAKLWDAL   91 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~--~l~s~s~Dg~v~vWd~~   91 (350)
                      .|+.||.-++|+|   .|.+||+|+.|+.+++||...+.+.+.|.||.+.|.++.|+|+..  +|++|..|++|++||+.
T Consensus       103 ~He~Pvi~ma~~~---~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~  179 (775)
T KOG0319|consen  103 IHEAPVITMAFDP---TGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLN  179 (775)
T ss_pred             ccCCCeEEEEEcC---CCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcc
Confidence            3999999999997   778999999999999999999999999999999999999988754  58999999999999976


Q ss_pred             CCCe----------------------------------------------------------------------------
Q 018784           92 TGDE----------------------------------------------------------------------------   95 (350)
Q Consensus        92 ~~~~----------------------------------------------------------------------------   95 (350)
                      +...                                                                            
T Consensus       180 ~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~  259 (775)
T KOG0319|consen  180 DKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGS  259 (775)
T ss_pred             cCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCC
Confidence            3221                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 018784           96 --------------------------------------------------------------------------------   95 (350)
Q Consensus        96 --------------------------------------------------------------------------------   95 (350)
                                                                                                      
T Consensus       260 g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~l  339 (775)
T KOG0319|consen  260 GVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHL  339 (775)
T ss_pred             ceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceE
Confidence                                                                                            


Q ss_pred             --------ee-----------eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCC---CCeeecCCCCcEEEEEE
Q 018784           96 --------KH-----------SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA---PPREVGNSSGSIRTVAW  153 (350)
Q Consensus        96 --------~~-----------~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~---~~~~~~~~~~~v~~~~~  153 (350)
                              +.           ...|+..|.+++...+|-+|+||+.|.++++|.++....   .......|.+.|.++++
T Consensus       340 aVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~  419 (775)
T KOG0319|consen  340 AVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAG  419 (775)
T ss_pred             EEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeee
Confidence                    00           001677788888666778999999999999998854322   22334578889999999


Q ss_pred             eCCCCcEEEEEeCCCeEEEEECCCCcee---Eee-------cCCCCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceee
Q 018784          154 LHSDQTILSSCTDSGGVRLWDARSGKIV---QTL-------ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVK  222 (350)
Q Consensus       154 ~~~~~~~~~s~~~dg~i~iwd~~~~~~~---~~~-------~~~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~  222 (350)
                      +.....++++++.|.++++|++...+..   ..+       .+...|++++++|+.+++++++ |++.++|++.+....-
T Consensus       420 ~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~  499 (775)
T KOG0319|consen  420 SKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLG  499 (775)
T ss_pred             cccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEE
Confidence            8888899999999999999999763211   111       2456899999999999998875 8899999999887777


Q ss_pred             eeecCCCC-ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784          223 GYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       223 ~~~~~~~~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~  301 (350)
                      .+..+... .++.|.+ ..++++++|.|.+|+||.+.+..++.++.||...|..+.|-.+++.|+|++.||.|+||++.+
T Consensus       500 vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt  578 (775)
T KOG0319|consen  500 VLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT  578 (775)
T ss_pred             EeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence            77776654 4455554 578999999999999999999999999999999999999999999999999999999999976


Q ss_pred             CCcccCCCCC
Q 018784          302 PNHEENHSGT  311 (350)
Q Consensus       302 ~~~~~~~~~~  311 (350)
                      .+.+.....|
T Consensus       579 ~eC~~tlD~H  588 (775)
T KOG0319|consen  579 NECEMTLDAH  588 (775)
T ss_pred             hhhhhhhhhc
Confidence            6655444443

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.2e-35  Score=256.96  Aligned_cols=291  Identities=21%  Similarity=0.321  Sum_probs=231.9

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC--Cceee--------eccCcc----CCeEEEEECCCCcEEEEe
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--GDWIG--------TFEGHK----GAVWSCCLDANALFSASG   79 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~--~~~~~--------~l~gH~----~~V~~v~~~~~~~~l~s~   79 (350)
                      +|+.+|.+.+++|..  ..++++|+.|-+.++|++..  .....        .+.++.    ..|++++|+.+|.+||+|
T Consensus       176 ~~~~~V~~~~WnP~~--~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG  253 (524)
T KOG0273|consen  176 RHESEVFICAWNPLR--DGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG  253 (524)
T ss_pred             cCCCceEEEecCchh--hhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence            499999999999843  23889999999999999752  22211        112332    469999999999999999


Q ss_pred             eCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCC
Q 018784           80 SADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ  158 (350)
Q Consensus        80 s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (350)
                      +.||.+|+|+.... ...++ .|+++|.++.|+..|++|++++.|+++.+||..+++... ...-|...-..+.|...+ 
T Consensus       254 ~~~G~~riw~~~G~-l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q-~f~~~s~~~lDVdW~~~~-  330 (524)
T KOG0273|consen  254 SEDGEARIWNKDGN-LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ-QFEFHSAPALDVDWQSND-  330 (524)
T ss_pred             ecCcEEEEEecCch-hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE-eeeeccCCccceEEecCc-
Confidence            99999999997544 44444 699999999999999999999999999999997655432 233345555678887443 


Q ss_pred             cEEEEEeCCCeEEEEECCCCceeEeec-CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCC-Ccee--
Q 018784          159 TILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-TESA--  233 (350)
Q Consensus       159 ~~~~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~-~~~~--  233 (350)
                       -+++++-|+.|+++.+...+++.++. ++++|..+.|+|.+.+|+++ +|+++++|.+........+..+.. .+.+  
T Consensus       331 -~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~w  409 (524)
T KOG0273|consen  331 -EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKW  409 (524)
T ss_pred             -eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEee
Confidence             47888899999999998888888776 46899999999999988765 678999999877665554443331 1222  


Q ss_pred             ------EecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccC
Q 018784          234 ------SLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEEN  307 (350)
Q Consensus       234 ------~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~  307 (350)
                            ..++..+.++++++.|++|++||+..|.+++++..|+.+|++++|+|+|+++|+|+.||.|.+|+.+..+....
T Consensus       410 sp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s  489 (524)
T KOG0273|consen  410 SPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS  489 (524)
T ss_pred             cCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEe
Confidence                  23344567899999999999999999999999999999999999999999999999999999999887766555


Q ss_pred             CCC
Q 018784          308 HSG  310 (350)
Q Consensus       308 ~~~  310 (350)
                      ..+
T Consensus       490 ~~~  492 (524)
T KOG0273|consen  490 YQG  492 (524)
T ss_pred             ecC
Confidence            433

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=7.5e-35  Score=245.97  Aligned_cols=283  Identities=21%  Similarity=0.360  Sum_probs=233.6

Q ss_pred             eeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEEC---CCCcEEEEeeCCCeE
Q 018784            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLD---ANALFSASGSADFTA   85 (350)
Q Consensus         9 ~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~---~~~~~l~s~s~Dg~v   85 (350)
                      |+-|.-|.+=|++|.-.     ++.++||+.||.++|||. .|+...++.||+++|.++++-   +....|+++|.|.++
T Consensus        98 pl~~~~hdDWVSsv~~~-----~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl  171 (423)
T KOG0313|consen   98 PLQCFLHDDWVSSVKGA-----SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTL  171 (423)
T ss_pred             ccccccchhhhhhhccc-----CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceE
Confidence            44455677777777432     569999999999999995 689999999999999988873   233469999999999


Q ss_pred             EEeeCCCCCeeee-----eeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCC------------------------CC
Q 018784           86 KLWDALTGDEKHS-----FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP------------------------DA  136 (350)
Q Consensus        86 ~vWd~~~~~~~~~-----~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~------------------------~~  136 (350)
                      ++|..+.+.....     -.|+..|.++...+++..+++|+.|.++++|+.+..                        ..
T Consensus       172 ~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~  251 (423)
T KOG0313|consen  172 RLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT  251 (423)
T ss_pred             EEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence            9998876653322     269999999999999999999999999999993210                        12


Q ss_pred             CCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE-cCCcEEEEEC
Q 018784          137 PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDA  215 (350)
Q Consensus       137 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~  215 (350)
                      +...+.+|..+|.++.|.+  ...+.+++.|.+|+.||+.+++...++....+++++..+|..++|+++ .+..+|+||.
T Consensus       252 P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DP  329 (423)
T KOG0313|consen  252 PLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDP  329 (423)
T ss_pred             ceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCC
Confidence            3345578899999999986  567889999999999999999999999999999999999988887765 5899999999


Q ss_pred             CCcc---eeeeeecCCC-CceeEecCCCCcEEEEecCCCeEEEEEcccCe-eEEeecCCCcCEEEEEEcCCCCEEEEecC
Q 018784          216 NHFG---LVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGE-QIGCNKGHHGPVHCVRFSPGGESYASGSE  290 (350)
Q Consensus       216 ~~~~---~~~~~~~~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~-~~~~~~~h~~~v~~l~~sp~~~~lasgs~  290 (350)
                      |++.   ..+.+..+.+ ...+.++|.+..+|++|+.|+++++||+++.. .+..+.+|...|.++.|. ++.+++||+.
T Consensus       330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGa  408 (423)
T KOG0313|consen  330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGA  408 (423)
T ss_pred             CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccC
Confidence            9863   2233433333 34667788888999999999999999999877 889999999999999997 5668999999


Q ss_pred             CCcEEEecCC
Q 018784          291 DGTIRIWQTN  300 (350)
Q Consensus       291 Dg~v~vw~~~  300 (350)
                      |..|+++...
T Consensus       409 D~~l~i~~~~  418 (423)
T KOG0313|consen  409 DNKLRIFKGS  418 (423)
T ss_pred             cceEEEeccc
Confidence            9999999754

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.3e-34  Score=249.01  Aligned_cols=275  Identities=22%  Similarity=0.416  Sum_probs=233.0

Q ss_pred             CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCee
Q 018784           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK   96 (350)
Q Consensus        17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~   96 (350)
                      ..|++++++.   +|.+||+|+.||.++||+ .+|..+.+|..|+++|.++.|+.+|.++++++.|+++.+||..++...
T Consensus       236 kdVT~L~Wn~---~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~  311 (524)
T KOG0273|consen  236 KDVTSLDWNN---DGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK  311 (524)
T ss_pred             CCcceEEecC---CCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE
Confidence            4789998875   999999999999999999 468888899999999999999999999999999999999999888876


Q ss_pred             eeee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEEC
Q 018784           97 HSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (350)
Q Consensus        97 ~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~  175 (350)
                      ..+. |...-..+.|-.+. .+++.+.|+.|+|+.+.... |.....+|.+.|.++.|.+ .+.+|++|++|+|++||.+
T Consensus       312 q~f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~-P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~  388 (524)
T KOG0273|consen  312 QQFEFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDR-PVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSM  388 (524)
T ss_pred             EeeeeccCCccceEEecCc-eEeecCCCceEEEEEecCCC-cceeeecccCceEEEEECC-CCceEEEecCCCeeEeeec
Confidence            6665 44443567776554 47899999999999997544 4455556999999999975 5779999999999999999


Q ss_pred             CCCceeEeecCC-CCeEEEEEecCCc----------EEEEEcCCcEEEEECCCcceeeeeecCC-CCceeEecCCCCcEE
Q 018784          176 RSGKIVQTLETK-SPVTSAEVSRDGR----------YITTADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIF  243 (350)
Q Consensus       176 ~~~~~~~~~~~~-~~v~~~~~~~~~~----------~l~~~~~~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l  243 (350)
                      ....+...++.+ ..|..+.|+|.|.          ++.++.|++|++||+..+.++..+..+. +...+.+.| +++++
T Consensus       389 ~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~yl  467 (524)
T KOG0273|consen  389 GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYL  467 (524)
T ss_pred             CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEE
Confidence            988888888865 4789999998652          4556779999999999999998886554 445566665 69999


Q ss_pred             EEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          244 IAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       244 ~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      ++|+.|+.|++|+..+++.++.+++-. .|..++|+.+|..|..+-.|+.+++-|++
T Consensus       468 AsGs~dg~V~iws~~~~~l~~s~~~~~-~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  468 ASGSLDGCVHIWSTKTGKLVKSYQGTG-GIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             EecCCCCeeEeccccchheeEeecCCC-eEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            999999999999999999998887644 49999999999999999999999998864

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=9.3e-34  Score=281.67  Aligned_cols=280  Identities=15%  Similarity=0.207  Sum_probs=219.4

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC----c----eeeeccCccCCeEEEEECC-CCcEEEEeeCCC
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----D----WIGTFEGHKGAVWSCCLDA-NALFSASGSADF   83 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~----~----~~~~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg   83 (350)
                      .+|...|.+++|+|   +|.+||+|+.|++|+||+....    .    +...+.+ ...|.+++|++ ++.++++++.||
T Consensus       480 ~~~~~~V~~i~fs~---dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg  555 (793)
T PLN00181        480 LNSSNLVCAIGFDR---DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEG  555 (793)
T ss_pred             cCCCCcEEEEEECC---CCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCCC
Confidence            45999999999997   9999999999999999997531    1    2233443 46788999976 578999999999


Q ss_pred             eEEEeeCCCCCeeeee-eccccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEE
Q 018784           84 TAKLWDALTGDEKHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL  161 (350)
Q Consensus        84 ~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  161 (350)
                      +|++||+.+++....+ .|...|.+++|+| ++.+|++|+.|++|++||+.+...... .. +...+.++.|.++++.++
T Consensus       556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~-~~-~~~~v~~v~~~~~~g~~l  633 (793)
T PLN00181        556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT-IK-TKANICCVQFPSESGRSL  633 (793)
T ss_pred             eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE-Ee-cCCCeEEEEEeCCCCCEE
Confidence            9999999888776665 5899999999997 789999999999999999986544322 22 345788999987788899


Q ss_pred             EEEeCCCeEEEEECCCCc-eeEeec-CCCCeEEEEEecCCcEEEEEcCCcEEEEECCCc------ceeeeeecCCCC-ce
Q 018784          162 SSCTDSGGVRLWDARSGK-IVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHF------GLVKGYNMPCNT-ES  232 (350)
Q Consensus       162 ~s~~~dg~i~iwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~------~~~~~~~~~~~~-~~  232 (350)
                      ++|+.|++|++||+++++ .+..+. +...|..+.|.+...+++++.|+.|++||++..      .++..+..+... ..
T Consensus       634 atgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~  713 (793)
T PLN00181        634 AFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF  713 (793)
T ss_pred             EEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence            999999999999998865 344554 446899999985555566678999999999743      344555444333 33


Q ss_pred             eEecCCCCcEEEEecCCCeEEEEEcccCeeEEe-------------ecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGC-------------NKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       233 ~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~-------------~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                      +.+.+ .+.++++|+.|+.|++|+......+..             ...|...|.+++|+|++..|++|+.||.|+||++
T Consensus       714 v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        714 VGLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            44554 478999999999999999765543321             1235567999999999999999999999999985

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5.3e-35  Score=267.44  Aligned_cols=202  Identities=28%  Similarity=0.491  Sum_probs=183.7

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      +-||++||+.+.|+|   +.++|+++|.|+++|+|++.+..++-.+.||..+|+.+.|+|.|.+|||+|.|++.++|...
T Consensus       447 L~GH~GPVyg~sFsP---d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d  523 (707)
T KOG0263|consen  447 LYGHSGPVYGCSFSP---DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD  523 (707)
T ss_pred             eecCCCceeeeeecc---cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence            479999999999997   99999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784           92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (350)
Q Consensus        92 ~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i  170 (350)
                      ...+.+.+ .|-+.|.|+.|||+..++++||.|.+||+||+.++... +...+|.+.|.+++|+| +++.+++|++||.|
T Consensus       524 ~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~V-RiF~GH~~~V~al~~Sp-~Gr~LaSg~ed~~I  601 (707)
T KOG0263|consen  524 HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSV-RIFTGHKGPVTALAFSP-CGRYLASGDEDGLI  601 (707)
T ss_pred             cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEE-EEecCCCCceEEEEEcC-CCceEeecccCCcE
Confidence            87777765 69999999999999999999999999999999877654 45566999999999986 78899999999999


Q ss_pred             EEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCc
Q 018784          171 RLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHF  218 (350)
Q Consensus       171 ~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~  218 (350)
                      ++||+.+++.+..+.. .+.+.++.|+.+|..|+++ .|.+|++||+.+.
T Consensus       602 ~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  602 KIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             EEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            9999999998887765 4679999999999988776 4789999998653

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.8e-34  Score=259.70  Aligned_cols=283  Identities=20%  Similarity=0.295  Sum_probs=239.2

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~   92 (350)
                      -|-.+.|.+++|--  |+-.+||.+++...+|+|+..+-.+. .+.||+..|.++....+|.+|+|||.|.++++|.++.
T Consensus       320 vG~ndEI~Dm~~lG--~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~  396 (775)
T KOG0319|consen  320 VGYNDEILDMKFLG--PEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNN  396 (775)
T ss_pred             cCCchhheeeeecC--CccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecC
Confidence            47788999999853  67789999999999999998877776 8999999999999777889999999999999998754


Q ss_pred             CCeeee-----eeccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCC--CCCe------eecCCCCcEEEEEEeCCCC
Q 018784           93 GDEKHS-----FEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPD--APPR------EVGNSSGSIRTVAWLHSDQ  158 (350)
Q Consensus        93 ~~~~~~-----~~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~--~~~~------~~~~~~~~v~~~~~~~~~~  158 (350)
                      +.....     ..|++.|.+++++..+ .+|+++|.|.++++|++....  ..+.      ....|...|.+++..| +.
T Consensus       397 ~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-nd  475 (775)
T KOG0319|consen  397 NCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-ND  475 (775)
T ss_pred             CcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CC
Confidence            443221     2599999999997644 689999999999999997621  1111      1246788899999875 56


Q ss_pred             cEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCCceeEec
Q 018784          159 TILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLE  236 (350)
Q Consensus       159 ~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  236 (350)
                      .++++|+.|++.+||++++.+...++.+| ..+.++.|+|+.++++++ .|.+|++|.+.++.+++++..+........+
T Consensus       476 kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F  555 (775)
T KOG0319|consen  476 KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASF  555 (775)
T ss_pred             ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeee
Confidence            78999999999999999999999999865 579999999998887765 5889999999999999999876544433333


Q ss_pred             CCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          237 PKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       237 ~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                      -.++..|++++.||.|++|++++++++.++..|.+.||+++.+|...+++||+.||.|.+|.-
T Consensus       556 ~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD  618 (775)
T KOG0319|consen  556 IRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD  618 (775)
T ss_pred             eeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeec
Confidence            346899999999999999999999999999999999999999999999999999999999963

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.5e-33  Score=225.95  Aligned_cols=256  Identities=21%  Similarity=0.377  Sum_probs=210.4

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc--eeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE   95 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~--~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~   95 (350)
                      .|..+.   ++||+++||.|+. -.|||||+.++.  ++.+|++|++.|.+|.|..+|+.++|||.||++||||+....+
T Consensus        42 qVNrLe---iTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~  117 (311)
T KOG0315|consen   42 QVNRLE---ITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC  117 (311)
T ss_pred             ceeeEE---EcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCccc
Confidence            466663   5569999998887 678999997754  6889999999999999999999999999999999999998888


Q ss_pred             eeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEEC
Q 018784           96 KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (350)
Q Consensus        96 ~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~  175 (350)
                      .+.+.|+.+|+++..+|+...|++|..+|.|++||+................+.++... +++.+++++...|.+++|++
T Consensus       118 qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~-~dgsml~a~nnkG~cyvW~l  196 (311)
T KOG0315|consen  118 QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVM-PDGSMLAAANNKGNCYVWRL  196 (311)
T ss_pred             chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEc-CCCcEEEEecCCccEEEEEc
Confidence            88899999999999999999999999999999999986555445555556678888754 57788888888899999998


Q ss_pred             CCCc------eeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCc-ceeeeeecCCCC-ceeEecCCCCcEEEE
Q 018784          176 RSGK------IVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHF-GLVKGYNMPCNT-ESASLEPKLGNIFIA  245 (350)
Q Consensus       176 ~~~~------~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~l~s  245 (350)
                      -+..      ++..++. ...+..+.++|++++|+++ .|.+++||...++ +..+.+..+..- ..+.|+. +++||++
T Consensus       197 ~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvT  275 (311)
T KOG0315|consen  197 LNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVT  275 (311)
T ss_pred             cCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEe
Confidence            7653      3344443 4568899999999999765 6899999999887 333333333222 3445554 6899999


Q ss_pred             ecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEc
Q 018784          246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFS  279 (350)
Q Consensus       246 g~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s  279 (350)
                      |+.|+.+++|++..++.++...+|..+..|++..
T Consensus       276 assd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  276 ASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             cCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            9999999999999999999999999888887764

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.1e-35  Score=247.98  Aligned_cols=296  Identities=21%  Similarity=0.315  Sum_probs=240.7

Q ss_pred             cccccceeEe--eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEee
Q 018784            3 KRKVAVPLVC--HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS   80 (350)
Q Consensus         3 ~~~~~~~~~~--~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s   80 (350)
                      .|++++|+|+  .||.+.|++++-+|..+  ..+||||.||.|+|||+...+++.+|++|.+.|..++++.  ..++|+|
T Consensus        51 eR~fakPFv~~L~gHrdGV~~lakhp~~l--s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvg  126 (433)
T KOG0268|consen   51 ERVFAKPFVGSLDGHRDGVSCLAKHPNKL--STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVG  126 (433)
T ss_pred             HHHhhccchhhccccccccchhhcCcchh--hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEec
Confidence            4899999996  69999999999888544  3789999999999999999999999999999999999976  7788999


Q ss_pred             CCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcE
Q 018784           81 ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (350)
Q Consensus        81 ~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  160 (350)
                      .|.+|+.|.... .+.+++..+..+..++.+-.+..++|+|.+  |.|||..... +.....-....+.++.|.|-...+
T Consensus       127 dDKtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~-Pv~smswG~Dti~svkfNpvETsI  202 (433)
T KOG0268|consen  127 DDKTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDN-PVSSMSWGADSISSVKFNPVETSI  202 (433)
T ss_pred             CCcceeeeeccC-CcceeeeccccccccccccccccccccCce--eeecccccCC-ccceeecCCCceeEEecCCCcchh
Confidence            999999999764 477777777888899888888889998875  8999986433 334444456678999999988999


Q ss_pred             EEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEE-EcCCcEEEEECCCccee-eeeecCCC-CceeEecC
Q 018784          161 LSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLV-KGYNMPCN-TESASLEP  237 (350)
Q Consensus       161 ~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~~~-~~~~~~~~-~~~~~~~~  237 (350)
                      +++|+.|+.|.++|+|++.++..+.....-+.++|+|++-.+++ ..|..+..||++..... ..+..+.. ...+.++|
T Consensus       203 Las~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp  282 (433)
T KOG0268|consen  203 LASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP  282 (433)
T ss_pred             eeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC
Confidence            99999999999999999999998888888899999997655544 45788999999876432 22222222 23344555


Q ss_pred             CCCcEEEEecCCCeEEEEEcccCeeEEeecCCC---cCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCC
Q 018784          238 KLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHH---GPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHS  309 (350)
Q Consensus       238 ~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~---~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~  309 (350)
                       .|+-|++||.|++|+||....+.....  .|.   ..|.++.||-|.++++|||.|+.|++|.....+.++..+
T Consensus       283 -tG~EfvsgsyDksIRIf~~~~~~SRdi--YhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~t  354 (433)
T KOG0268|consen  283 -TGQEFVSGSYDKSIRIFPVNHGHSRDI--YHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVIT  354 (433)
T ss_pred             -CcchhccccccceEEEeecCCCcchhh--hhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCCC
Confidence             589999999999999999876644322  232   358999999999999999999999999987766655443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-33  Score=251.77  Aligned_cols=281  Identities=21%  Similarity=0.274  Sum_probs=249.6

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~   92 (350)
                      .-|++.|-+|.|+|..|   .++++=..|.+.|||.+++..+++++--.-+|++..|-+....+++|+.|+.|||++..+
T Consensus        10 ~~rSdRVKsVd~HPteP---w~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt   86 (794)
T KOG0276|consen   10 QSRSDRVKSVDFHPTEP---WILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT   86 (794)
T ss_pred             hccCCceeeeecCCCCc---eEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence            45899999999999777   788888999999999999999999998889999999999999999999999999999999


Q ss_pred             CCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEE
Q 018784           93 GDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (350)
Q Consensus        93 ~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~  171 (350)
                      .+.+..+ .|...+++++.||...+++|+|.|-+|++||.+..=.......+|.--|.+++|.|.|...++||+-|+||+
T Consensus        87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK  166 (794)
T KOG0276|consen   87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK  166 (794)
T ss_pred             ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence            9988887 599999999999999999999999999999997643334556778888999999999999999999999999


Q ss_pred             EEECCCCceeEeecCC-CCeEEEEEecCC---cEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEec
Q 018784          172 LWDARSGKIVQTLETK-SPVTSAEVSRDG---RYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG  247 (350)
Q Consensus       172 iwd~~~~~~~~~~~~~-~~v~~~~~~~~~---~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~  247 (350)
                      +|.+.+..+..+++.+ ..|+++++-+-|   .++++++|..|++||-.+..+++++..+.+..+..+..+.-.++++|+
T Consensus       167 VWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs  246 (794)
T KOG0276|consen  167 VWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGS  246 (794)
T ss_pred             EEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEec
Confidence            9999999888888864 689999999876   455666788999999999999999988776655554444468999999


Q ss_pred             CCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEE
Q 018784          248 EDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRI  296 (350)
Q Consensus       248 ~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~v  296 (350)
                      +||++++|+..+-++..++...-+.|||++-.+.+..++.|...|.|.+
T Consensus       247 EDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  247 EDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             CCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            9999999999998888888888889999999999888999999988766

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.9e-34  Score=239.85  Aligned_cols=258  Identities=21%  Similarity=0.341  Sum_probs=213.9

Q ss_pred             eeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEEC
Q 018784           53 WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDL  131 (350)
Q Consensus        53 ~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~  131 (350)
                      ....+.||..+|+.+-++|+-.++++++.|++|++||..+++....+ .|.+.|..++|+..|++|++++.|-.+++||.
T Consensus       100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~  179 (406)
T KOG0295|consen  100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF  179 (406)
T ss_pred             chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence            34567889999999999999999999999999999999999886666 59999999999999999999999999999998


Q ss_pred             CCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCC-CeEEEEEecCCcEEEEE-cCCc
Q 018784          132 NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS-PVTSAEVSRDGRYITTA-DGSS  209 (350)
Q Consensus       132 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~~~~  209 (350)
                      .+.....+....|.-.|.++.|.|.+ ..++||+.|.+|+.||+.++-++.++..+. -+..+..+.||.+++++ .+.+
T Consensus       180 ~~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqt  258 (406)
T KOG0295|consen  180 DTFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQT  258 (406)
T ss_pred             HHHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCce
Confidence            76433334455677778999988765 678899999999999999999999998765 47778889999998876 4789


Q ss_pred             EEEEECCCcceeeeeecCCCC-ceeEecC--------------CCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEE
Q 018784          210 VKFWDANHFGLVKGYNMPCNT-ESASLEP--------------KLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVH  274 (350)
Q Consensus       210 i~vwd~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~  274 (350)
                      +++|-..+..+...+..+..+ .++.+.|              ..++++.+++.|++|++||+.+|.++.++.+|..+|.
T Consensus       259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr  338 (406)
T KOG0295|consen  259 LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR  338 (406)
T ss_pred             EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence            999999887443332222221 1111111              1246999999999999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCC
Q 018784          275 CVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGT  311 (350)
Q Consensus       275 ~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~  311 (350)
                      .++|+|.|+||+|+..|+++++||+..........++
T Consensus       339 ~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah  375 (406)
T KOG0295|consen  339 GVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH  375 (406)
T ss_pred             eeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC
Confidence            9999999999999999999999999877766554443

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.2e-33  Score=242.37  Aligned_cols=288  Identities=25%  Similarity=0.345  Sum_probs=237.0

Q ss_pred             ccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeE
Q 018784            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (350)
Q Consensus         6 ~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v   85 (350)
                      +..|.+...| .+|..++|+|..|.. +.+|+|  -.+.||+..+-...+++......|.+++|..||+++|.|...|.|
T Consensus        17 ~~~~~~~ke~-~~vssl~fsp~~P~d-~aVt~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V   92 (487)
T KOG0310|consen   17 ETFPPVHKEH-NSVSSLCFSPKHPYD-FAVTSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHV   92 (487)
T ss_pred             hccccccccc-CcceeEecCCCCCCc-eEEecc--cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcE
Confidence            3445544443 589999999998874 444444  467899998888888899999999999999999999999999999


Q ss_pred             EEeeCCCCCeeeee-eccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEE
Q 018784           86 KLWDALTGDEKHSF-EHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (350)
Q Consensus        86 ~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s  163 (350)
                      +|+|..+...+..+ .|..+|..+.|+|++ +.|++|+.|+.+++||+.+... ...+..|...|++.+|+|....++++
T Consensus        93 ~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivvt  171 (487)
T KOG0310|consen   93 KVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVVT  171 (487)
T ss_pred             EEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEEe
Confidence            99996554333333 699999999999955 5678899999999999987663 44667899999999999999999999


Q ss_pred             EeCCCeEEEEECCCC-ceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeec-CCCCceeEecCCCCc
Q 018784          164 CTDSGGVRLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM-PCNTESASLEPKLGN  241 (350)
Q Consensus       164 ~~~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~  241 (350)
                      |+.||+|++||+|+. ..+.++.+..+|.++.+-|.|.+++++.+..|++||+-++........ +....++.....++.
T Consensus       172 GsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~  251 (487)
T KOG0310|consen  172 GSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDST  251 (487)
T ss_pred             cCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCc
Confidence            999999999999987 788899999999999999999999999999999999986554332222 333333333333578


Q ss_pred             EEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          242 IFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       242 ~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                      .|++|+.|+.+++||+.+.+.++.+. ..++|.+++.+|+++.++.|-.||.+.+=+.
T Consensus       252 rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~  308 (487)
T KOG0310|consen  252 RLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR  308 (487)
T ss_pred             eEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehh
Confidence            99999999999999988888776664 6789999999999999999999999888743

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=4.3e-33  Score=229.89  Aligned_cols=284  Identities=25%  Similarity=0.392  Sum_probs=232.6

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC------------------CceeeeccCccCCeEEEEECCCC
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET------------------GDWIGTFEGHKGAVWSCCLDANA   73 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~------------------~~~~~~l~gH~~~V~~v~~~~~~   73 (350)
                      +..|+.++.+.+|+|   ||.++||||.|.+|+|.|++.                  ...+++|-.|.+.|+.+.|+|..
T Consensus       108 lt~HK~~cR~aafs~---DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  108 LTSHKSPCRAAAFSP---DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             EeecccceeeeeeCC---CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            367999999999997   999999999999999999761                  13577888899999999999999


Q ss_pred             cEEEEeeCCCeEEEeeCCCCCee---eeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCe--eecCCCCcE
Q 018784           74 LFSASGSADFTAKLWDALTGDEK---HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR--EVGNSSGSI  148 (350)
Q Consensus        74 ~~l~s~s~Dg~v~vWd~~~~~~~---~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~--~~~~~~~~v  148 (350)
                      ..|+||+.|++|+++|......+   ..+.....|+++.|+|.|.+|+.|..-.++++||+++.++-..  ....|.+.|
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai  264 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI  264 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence            99999999999999998644322   2345667899999999999999999999999999987653221  234678899


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC---CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeee
Q 018784          149 RTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGY  224 (350)
Q Consensus       149 ~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~  224 (350)
                      +++.+++ .+.+.++++.||.|++||=-+++++.++..   ...|.+..|..+++++.++ -|..+++|.+.++++++.|
T Consensus       265 ~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y  343 (430)
T KOG0640|consen  265 TQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY  343 (430)
T ss_pred             eEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence            9999875 567889999999999999989999888763   4679999999999998655 5889999999999999998


Q ss_pred             ecCCCC------ceeEecCCCCcEEEEecC-CCeEEEEEcccCeeEEee-cCCCcCEEEEEEcCCCCEEEEecCCCcEEE
Q 018784          225 NMPCNT------ESASLEPKLGNIFIAGGE-DMWVHVFDFHTGEQIGCN-KGHHGPVHCVRFSPGGESYASGSEDGTIRI  296 (350)
Q Consensus       225 ~~~~~~------~~~~~~~~~~~~l~sg~~-d~~i~v~d~~~~~~~~~~-~~h~~~v~~l~~sp~~~~lasgs~Dg~v~v  296 (350)
                      ......      ....|+. ...+++.-.+ -+.+.-||.++++.+..+ .+|.+++..+.-||.++.+++||.|-++|+
T Consensus       344 tGAg~tgrq~~rtqAvFNh-tEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRF  422 (430)
T KOG0640|consen  344 TGAGTTGRQKHRTQAVFNH-TEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARF  422 (430)
T ss_pred             ecCCcccchhhhhhhhhcC-ccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeee
Confidence            875321      1223332 2344444333 456889999998876655 489999999999999999999999999999


Q ss_pred             ecCC
Q 018784          297 WQTN  300 (350)
Q Consensus       297 w~~~  300 (350)
                      |-.+
T Consensus       423 Wyrr  426 (430)
T KOG0640|consen  423 WYRR  426 (430)
T ss_pred             eeec
Confidence            9654

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.6e-33  Score=233.74  Aligned_cols=278  Identities=25%  Similarity=0.351  Sum_probs=236.5

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeec--------cCccCCeEEEEECCCCcEEEEeeCCCeE
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF--------EGHKGAVWSCCLDANALFSASGSADFTA   85 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l--------~gH~~~V~~v~~~~~~~~l~s~s~Dg~v   85 (350)
                      |.+..+-|..|+|   ||.||++||-||-|.+|+.-+|+..+.|        .-|..+|.|++|+-|..++|||+.||.|
T Consensus       211 g~KSh~EcA~FSP---DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkI  287 (508)
T KOG0275|consen  211 GQKSHVECARFSP---DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKI  287 (508)
T ss_pred             ccccchhheeeCC---CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcE
Confidence            6666777888886   9999999999999999999998876544        4488999999999999999999999999


Q ss_pred             EEeeCCCCCeeeee--eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEE
Q 018784           86 KLWDALTGDEKHSF--EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (350)
Q Consensus        86 ~vWd~~~~~~~~~~--~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s  163 (350)
                      +||.+.+|.+++.+  .|+..|+|+.|+.|+..+++++.|.++|+--+.++... +...+|..-|....|.+ ++..+++
T Consensus       288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~L-KEfrGHsSyvn~a~ft~-dG~~iis  365 (508)
T KOG0275|consen  288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCL-KEFRGHSSYVNEATFTD-DGHHIIS  365 (508)
T ss_pred             EEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhH-HHhcCccccccceEEcC-CCCeEEE
Confidence            99999999998887  49999999999999999999999999999999876654 45567888888888874 6667889


Q ss_pred             EeCCCeEEEEECCCCceeEeecC---CCCeEEEEEecCC--cEEEEEcCCcEEEEECCCcceeeeeecCC----CCceeE
Q 018784          164 CTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDG--RYITTADGSSVKFWDANHFGLVKGYNMPC----NTESAS  234 (350)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~--~~l~~~~~~~i~vwd~~~~~~~~~~~~~~----~~~~~~  234 (350)
                      ++.||+|++|+.++.+++.+++.   ..+++++...|.+  .++++....++.+.++. ++.++.+....    ....+.
T Consensus       366 aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~  444 (508)
T KOG0275|consen  366 ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAI  444 (508)
T ss_pred             ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEE
Confidence            99999999999999999988875   4578888877754  46666667788888875 45566655432    234555


Q ss_pred             ecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       235 ~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      +.| .|..+.+.++|+.++.|...+|...+++.-|+.-|-.++-+|..+.+|+-++||.+++|.
T Consensus       445 lSp-kGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  445 LSP-KGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             ecC-CCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            665 488999999999999999999999999999999999999999999999999999999994

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.2e-31  Score=243.96  Aligned_cols=285  Identities=18%  Similarity=0.329  Sum_probs=232.6

Q ss_pred             CCceeEEEecccCCCccEEEEEeC-CCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASK-DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD   94 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~-d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~   94 (350)
                      ..+|..+.|+.   .|.-||-|+. -|.+-+|+-.+...+....||...+.+++++|||+++|||+.||.|||||...+-
T Consensus       307 ~~~I~t~~~N~---tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf  383 (893)
T KOG0291|consen  307 DQKILTVSFNS---TGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF  383 (893)
T ss_pred             cceeeEEEecc---cCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce
Confidence            45777888875   6888888876 3789999988888888889999999999999999999999999999999999999


Q ss_pred             eeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC-eEEE
Q 018784           95 EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG-GVRL  172 (350)
Q Consensus        95 ~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg-~i~i  172 (350)
                      |..++ .|+..|..+.|+..++.+++.+-||+||.||+.....-.....+..-...+++..+ .+.++.+|+.|. .|.+
T Consensus       384 C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~Ifv  462 (893)
T KOG0291|consen  384 CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFV  462 (893)
T ss_pred             EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEE
Confidence            99888 69999999999999999999999999999999865544344444444555666544 455666666665 5999


Q ss_pred             EECCCCceeEeecC-CCCeEEEEEecCCcEEEEEc-CCcEEEEECCCc-ceeeeeecCCCCceeEecCCCCcEEEEecCC
Q 018784          173 WDARSGKIVQTLET-KSPVTSAEVSRDGRYITTAD-GSSVKFWDANHF-GLVKGYNMPCNTESASLEPKLGNIFIAGGED  249 (350)
Q Consensus       173 wd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d  249 (350)
                      |++++|+.+-.+.+ .+||..++|+|.+..|++++ |.+||+||+-.. +.+.++..........+.| +|+.+++++.|
T Consensus       463 WS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrP-dG~elaVaTld  541 (893)
T KOG0291|consen  463 WSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRP-DGKELAVATLD  541 (893)
T ss_pred             EEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcC-CCCeEEEEEec
Confidence            99999999998885 57999999999999988765 999999998653 3455556555666777777 58999999999


Q ss_pred             CeEEEEEcccCeeEEeecC--------------------CCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784          250 MWVHVFDFHTGEQIGCNKG--------------------HHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       250 ~~i~v~d~~~~~~~~~~~~--------------------h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~  305 (350)
                      |.|.+||...+.++..+.|                    -....+.+++|+||.++++|+....|++|+++.....
T Consensus       542 gqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vll  617 (893)
T KOG0291|consen  542 GQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLL  617 (893)
T ss_pred             ceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhee
Confidence            9999999877665432211                    1246889999999999999999999999998755544

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=100.00  E-value=2.1e-33  Score=239.48  Aligned_cols=278  Identities=18%  Similarity=0.274  Sum_probs=234.9

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc--eeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~--~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd   89 (350)
                      +..|.+.|..+-|-+   +...|++|+.|..|++|+....+  ...+|.|--+.|..+.+.+++..+++++.|+.+++|+
T Consensus       171 ld~h~gev~~v~~l~---~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn  247 (459)
T KOG0288|consen  171 LDAHEGEVHDVEFLR---NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN  247 (459)
T ss_pred             hhccccccceeEEcc---CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence            467999999999886   66789999999999999976554  7788999889999999999999999999999999999


Q ss_pred             CCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784           90 ALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (350)
Q Consensus        90 ~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg  168 (350)
                      +...+..+++ .|+..|+++.|......+++|+.|++|+.||+.+..+.......  ..+..+...   ...++||..|+
T Consensus       248 vd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~--S~cnDI~~~---~~~~~SgH~Dk  322 (459)
T KOG0288|consen  248 VDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG--SQCNDIVCS---ISDVISGHFDK  322 (459)
T ss_pred             ccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc--ccccceEec---ceeeeeccccc
Confidence            9988888877 59999999999887777999999999999999875554333221  223344432   45688999999


Q ss_pred             eEEEEECCCCceeEeecCCCCeEEEEEecCCcEE-EEEcCCcEEEEECCCcceeeeeecCCCC-----ceeEecCCCCcE
Q 018784          169 GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMPCNT-----ESASLEPKLGNI  242 (350)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  242 (350)
                      +|++||.+++.+.......+.++++..++++..+ +++.|.++.+.|+++......+.-++..     ....|+ +++.|
T Consensus       323 kvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS-pd~~Y  401 (459)
T KOG0288|consen  323 KVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS-PDGSY  401 (459)
T ss_pred             ceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC-CCCce
Confidence            9999999999999999999999999999998655 5567899999999999888777665432     233444 46899


Q ss_pred             EEEecCCCeEEEEEcccCeeEEeecCCCc--CEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          243 FIAGGEDMWVHVFDFHTGEQIGCNKGHHG--PVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       243 l~sg~~d~~i~v~d~~~~~~~~~~~~h~~--~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      +++||.||.|+||++.++++...+.....  .|++++|+|.|..|++++.++.+.+|.
T Consensus       402 vaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  402 VAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             eeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            99999999999999999999888875444  599999999999999999999999994

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=100.00  E-value=5.5e-32  Score=251.69  Aligned_cols=277  Identities=25%  Similarity=0.399  Sum_probs=233.1

Q ss_pred             cCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeee-ccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCC
Q 018784           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT-FEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG   93 (350)
Q Consensus        15 H~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~-l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~   93 (350)
                      |...+.+..|.     ..++++++.|.++++|+..++..+.. +.||++.|+++++..-+.++++|+.|.++|+||..++
T Consensus       207 ~~~~~~~~q~~-----~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg  281 (537)
T KOG0274|consen  207 DDHVVLCLQLH-----DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG  281 (537)
T ss_pred             Ccchhhhheee-----cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence            44456666665     34789999999999999999998888 9999999999999877889999999999999999999


Q ss_pred             Ceeeeee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEE
Q 018784           94 DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (350)
Q Consensus        94 ~~~~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i  172 (350)
                      ++.+++. |.+.|+++...+  ..+++|+.|.+|++|++..+...... ..|.+.|.++...   +.++++|+.|++|++
T Consensus       282 ~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~-~~h~~~V~~v~~~---~~~lvsgs~d~~v~V  355 (537)
T KOG0274|consen  282 ECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLL-RGHTGPVNCVQLD---EPLLVSGSYDGTVKV  355 (537)
T ss_pred             cEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEe-ccccccEEEEEec---CCEEEEEecCceEEE
Confidence            9999986 999999987664  45788999999999999876654333 4499999999864   668899999999999


Q ss_pred             EECCCCceeEeecCC-CCeEEEEEecCCcEEEEEcCCcEEEEECCCc-ceeeeeecCCCCceeEecCCCCcEEEEecCCC
Q 018784          173 WDARSGKIVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHF-GLVKGYNMPCNTESASLEPKLGNIFIAGGEDM  250 (350)
Q Consensus       173 wd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~  250 (350)
                      ||+++++++..+..+ ..|.++.+.+...++.++-|++|++||+++. +++.++..+.......  ...++.|++++.|+
T Consensus       356 W~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l--~~~~~~Lvs~~aD~  433 (537)
T KOG0274|consen  356 WDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL--LLRDNFLVSSSADG  433 (537)
T ss_pred             EEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccc--ccccceeEeccccc
Confidence            999999999999865 5788887777656666777999999999999 8888877665443211  12368999999999


Q ss_pred             eEEEEEcccCeeEEeecC-CCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCccc
Q 018784          251 WVHVFDFHTGEQIGCNKG-HHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEE  306 (350)
Q Consensus       251 ~i~v~d~~~~~~~~~~~~-h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~  306 (350)
                      +|++||..+++++.++.+ |...|+++++.  ...+++++.|+.+++||++......
T Consensus       434 ~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  434 TIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIR  488 (537)
T ss_pred             cEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhh
Confidence            999999999999999998 77899999987  5678999999999999998666554

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=3.1e-32  Score=228.66  Aligned_cols=247  Identities=25%  Similarity=0.405  Sum_probs=209.8

Q ss_pred             ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEE
Q 018784           52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFD  130 (350)
Q Consensus        52 ~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd  130 (350)
                      +..+.+.||-+-|+|+++.|-.++|+||+.|++|+|||+.+++.+.++. |...|+.+++++-..++.+++.|+.|+.||
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD  221 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD  221 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence            4456789999999999999999999999999999999999999888886 999999999999999999999999999999


Q ss_pred             CCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEec-CCcEEEEEcCC
Q 018784          131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSR-DGRYITTADGS  208 (350)
Q Consensus       131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~-~~~~l~~~~~~  208 (350)
                      ++..+..... -+|-..|++++.. +.-.++++|+.|.++++||+|+...+..+.. ..+|.++.+.| |.+.++++.|+
T Consensus       222 Le~nkvIR~Y-hGHlS~V~~L~lh-PTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~  299 (460)
T KOG0285|consen  222 LEYNKVIRHY-HGHLSGVYCLDLH-PTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDS  299 (460)
T ss_pred             chhhhhHHHh-ccccceeEEEecc-ccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCc
Confidence            9865544333 4566778888865 4456788999999999999999999999984 57899998886 66777778899


Q ss_pred             cEEEEECCCcceeeeeecCCCC-ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEE
Q 018784          209 SVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYAS  287 (350)
Q Consensus       209 ~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~las  287 (350)
                      +|++||++.++...++..+... ....++|. ...|++++.|. |+-|++..|..+..+.+|..-|.+|+...|+ ++++
T Consensus       300 tvrlWDl~agkt~~tlt~hkksvral~lhP~-e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~  376 (460)
T KOG0285|consen  300 TVRLWDLRAGKTMITLTHHKKSVRALCLHPK-ENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVS  376 (460)
T ss_pred             eEEEeeeccCceeEeeecccceeeEEecCCc-hhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEE
Confidence            9999999998877766655443 34455553 57788887765 8999999999988899999999999998776 7889


Q ss_pred             ecCCCcEEEecCCCCC
Q 018784          288 GSEDGTIRIWQTNPPN  303 (350)
Q Consensus       288 gs~Dg~v~vw~~~~~~  303 (350)
                      |+..|.+.+||...+-
T Consensus       377 G~dng~~~fwdwksg~  392 (460)
T KOG0285|consen  377 GGDNGSIMFWDWKSGH  392 (460)
T ss_pred             cCCceEEEEEecCcCc
Confidence            9999999999986543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=5.3e-31  Score=261.97  Aligned_cols=295  Identities=14%  Similarity=0.213  Sum_probs=222.3

Q ss_pred             CCCeeEeeCCCCceeee-----ccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCC----C----eeeeeeccccEe
Q 018784           40 DSSPMLRNGETGDWIGT-----FEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG----D----EKHSFEHKHIVR  106 (350)
Q Consensus        40 d~~v~iw~~~~~~~~~~-----l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~----~----~~~~~~h~~~V~  106 (350)
                      +|-+++|+....+....     +.+|.+.|.+++|++++.++||||.|++|+|||....    .    ....+.+...|.
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  536 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS  536 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence            56678888776554433     4459999999999999999999999999999997532    1    122344556789


Q ss_pred             EEEEcC-CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec
Q 018784          107 ACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE  185 (350)
Q Consensus       107 ~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~  185 (350)
                      +++|+| ++.+|++++.|++|++||+.+... ......|.+.|.+++|.+.++.++++|+.|++|++||+++++.+..+.
T Consensus       537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~-~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~  615 (793)
T PLN00181        537 GICWNSYIKSQVASSNFEGVVQVWDVARSQL-VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK  615 (793)
T ss_pred             eEEeccCCCCEEEEEeCCCeEEEEECCCCeE-EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence            999987 478999999999999999986543 344567888999999998788899999999999999999999888888


Q ss_pred             CCCCeEEEEEe-cCCcEEEEE-cCCcEEEEECCCcc-eeeeeecCCC-CceeEecCCCCcEEEEecCCCeEEEEEcccC-
Q 018784          186 TKSPVTSAEVS-RDGRYITTA-DGSSVKFWDANHFG-LVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTG-  260 (350)
Q Consensus       186 ~~~~v~~~~~~-~~~~~l~~~-~~~~i~vwd~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~-  260 (350)
                      .+..+.++.|. +++.+++++ .++.|++||+++.. .+..+..+.. ...+.+.  ++.++++++.|+.|++||+..+ 
T Consensus       616 ~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~  693 (793)
T PLN00181        616 TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSI  693 (793)
T ss_pred             cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCc
Confidence            77888999995 467777655 58899999998765 2333332322 2233443  4789999999999999999743 


Q ss_pred             -----eeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCC-CCCccccccccccccceeeeeeEE
Q 018784          261 -----EQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSG-TGNAQTGKLKASTDEVTRKIEGFH  334 (350)
Q Consensus       261 -----~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~  334 (350)
                           ..+..+.+|...+.+++|+|++.+|++|+.|+.|++|+...+.....+.. ......+   .........|..+.
T Consensus       694 ~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~---~~~~~~~~~V~~v~  770 (793)
T PLN00181        694 SGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSG---LEVDDASQFISSVC  770 (793)
T ss_pred             cccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccc---cccCCCCcEEEEEE
Confidence                 56778899999999999999999999999999999999765433211110 0000111   11233445678888


Q ss_pred             Ecccch
Q 018784          335 INKEGK  340 (350)
Q Consensus       335 ~~~~g~  340 (350)
                      ++++|.
T Consensus       771 ws~~~~  776 (793)
T PLN00181        771 WRGQSS  776 (793)
T ss_pred             EcCCCC
Confidence            888775

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4e-31  Score=245.95  Aligned_cols=256  Identities=25%  Similarity=0.423  Sum_probs=214.5

Q ss_pred             eeeccCc-cCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC--eeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEE
Q 018784           54 IGTFEGH-KGAVWSCCLDANALFSASGSADFTAKLWDALTGD--EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIF  129 (350)
Q Consensus        54 ~~~l~gH-~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~--~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vw  129 (350)
                      ...+.+| ...|.++.|+++|.++++++.|+.+++|+..+..  ....+ .|...|..++|+|+++++++++.|+++++|
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw  230 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW  230 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence            3455555 7889999999999999999999999999996666  44443 689999999999999999999999999999


Q ss_pred             ECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEEc-C
Q 018784          130 DLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTAD-G  207 (350)
Q Consensus       130 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~  207 (350)
                      |+.......+.+..|...|.+++|.+.+ .++++|+.|++|++||+++++++..+..+ .+++.++|++++.++++++ |
T Consensus       231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d  309 (456)
T KOG0266|consen  231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD  309 (456)
T ss_pred             eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence            9955544556677899999999999877 89999999999999999999999999865 5899999999999987765 8


Q ss_pred             CcEEEEECCCcc--eeeeeecCCCC---ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcC---EEEEEEc
Q 018784          208 SSVKFWDANHFG--LVKGYNMPCNT---ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGP---VHCVRFS  279 (350)
Q Consensus       208 ~~i~vwd~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~---v~~l~~s  279 (350)
                      +.|++||+.++.  +.+........   ..+.+. +++.++++++.|+.+++||+..+..+..+.+|...   +.+..++
T Consensus       310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fs-p~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~  388 (456)
T KOG0266|consen  310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFS-PNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLS  388 (456)
T ss_pred             ccEEEEECCCCceeeeecccCCCCCCceeEEEEC-CCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccccc
Confidence            999999999988  44444443333   334444 46899999999999999999999999999998874   4455667


Q ss_pred             CCCCEEEEecCCCcEEEecCCCCCcccCCCCC
Q 018784          280 PGGESYASGSEDGTIRIWQTNPPNHEENHSGT  311 (350)
Q Consensus       280 p~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~  311 (350)
                      +.+.++++|+.|+.|++|+...........++
T Consensus       389 ~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h  420 (456)
T KOG0266|consen  389 TGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH  420 (456)
T ss_pred             CCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence            89999999999999999999876655555554

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.7e-30  Score=214.22  Aligned_cols=284  Identities=24%  Similarity=0.339  Sum_probs=227.6

Q ss_pred             cccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeC--C
Q 018784            5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA--D   82 (350)
Q Consensus         5 ~~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~--D   82 (350)
                      ++....+++.-...|.++.|++   +|.+|++++.|.+++|||..++++++++..+.-.|..++|......+.-++.  |
T Consensus         3 s~~~ak~f~~~~~~i~sl~fs~---~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d   79 (311)
T KOG1446|consen    3 SFRPAKVFRETNGKINSLDFSD---DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKED   79 (311)
T ss_pred             ccccccccccCCCceeEEEecC---CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCC
Confidence            3444555666678999999997   9999999999999999999999999999998888988888655554444455  9


Q ss_pred             CeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEE
Q 018784           83 FTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL  161 (350)
Q Consensus        83 g~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  161 (350)
                      .+||..++.+++.++++ .|+..|.++..+|-+..+++++.|++||+||++........... ..  ..++| .+++.++
T Consensus        80 ~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-~~--pi~Af-Dp~GLif  155 (311)
T KOG1446|consen   80 DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS-GR--PIAAF-DPEGLIF  155 (311)
T ss_pred             CceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC-CC--cceeE-CCCCcEE
Confidence            99999999999998887 59999999999999999999999999999999855543322211 11  12344 5677888


Q ss_pred             EEEeCCCeEEEEECCCC--ceeEeec----CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCCc---
Q 018784          162 SSCTDSGGVRLWDARSG--KIVQTLE----TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTE---  231 (350)
Q Consensus       162 ~s~~~dg~i~iwd~~~~--~~~~~~~----~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~---  231 (350)
                      |.+.....|+++|+|+.  .+..++.    ...+.+.+.|+|||+++..+ ..+.+.+.|.-++..+.++....+..   
T Consensus       156 A~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~  235 (311)
T KOG1446|consen  156 ALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLP  235 (311)
T ss_pred             EEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcc
Confidence            88777679999999974  3444443    24678999999999987655 56789999999988887777654433   


Q ss_pred             -eeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecC-CCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          232 -SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG-HHGPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       232 -~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~-h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                       .+.+.| +++.+++|+.||+|++|++.+|..+..+.+ +.+++.++.|+|.-.+++|++.  .+.+|=
T Consensus       236 ~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw~  301 (311)
T KOG1446|consen  236 LSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFWL  301 (311)
T ss_pred             eeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc--eEEEEe
Confidence             555655 589999999999999999999999999988 7999999999998777776654  688884

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.4e-30  Score=226.04  Aligned_cols=311  Identities=19%  Similarity=0.245  Sum_probs=236.4

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      +.||...|.++.|-|.-|-  .++|||.|+++.++.....++..++..|+.-|+++.++|||.+++|+|.||.|.++|-.
T Consensus       143 i~GhSr~ins~~~KpsRPf--Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGk  220 (603)
T KOG0318|consen  143 ITGHSRRINSVDFKPSRPF--RIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGK  220 (603)
T ss_pred             eeccceeEeeeeccCCCce--EEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCC
Confidence            4699999999999987664  89999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeeee----ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCC--CcEEEEEEeCCCCcEEEEEe
Q 018784           92 TGDEKHSFE----HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS--GSIRTVAWLHSDQTILSSCT  165 (350)
Q Consensus        92 ~~~~~~~~~----h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~s~~  165 (350)
                      +++.+..+.    |++.|.++.|+||++.++|++.|.++||||+..............  ..-..+.|-   +..+++-+
T Consensus       221 tge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq---kd~lItVS  297 (603)
T KOG0318|consen  221 TGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ---KDHLITVS  297 (603)
T ss_pred             CccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe---CCeEEEEE
Confidence            999887774    999999999999999999999999999999987654443332222  333445554   22455566


Q ss_pred             CCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeee-ecCCCCceeEecCCCCcE
Q 018784          166 DSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGY-NMPCNTESASLEPKLGNI  242 (350)
Q Consensus       166 ~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  242 (350)
                      -+|+|.+++.....++..+..+ ..|+++..++++++|.++ .||.|.-||..++..-+.. ..+.+........ ....
T Consensus       298 l~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-~~~~  376 (603)
T KOG0318|consen  298 LSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-ESGE  376 (603)
T ss_pred             cCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeec-CCCc
Confidence            7799999999998888888765 589999999999988766 5999999999876543322 1122222222221 2245


Q ss_pred             EEEecCCCeEEEEEcccCe-----------e--------------------EEeecCCC--------cCEEEEEEcCCCC
Q 018784          243 FIAGGEDMWVHVFDFHTGE-----------Q--------------------IGCNKGHH--------GPVHCVRFSPGGE  283 (350)
Q Consensus       243 l~sg~~d~~i~v~d~~~~~-----------~--------------------~~~~~~h~--------~~v~~l~~sp~~~  283 (350)
                      +++.+.|.++++.++....           +                    +..++.+.        -.+.+++++|++.
T Consensus       377 ~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~  456 (603)
T KOG0318|consen  377 LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS  456 (603)
T ss_pred             EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC
Confidence            6677777888887653211           0                    00112121        1356799999999


Q ss_pred             EEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccchh
Q 018784          284 SYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKA  341 (350)
Q Consensus       284 ~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~  341 (350)
                      .+|.|++||.|+||.+....+.+             +....++.++|..+..||||.-
T Consensus       457 ~vaVGG~Dgkvhvysl~g~~l~e-------------e~~~~~h~a~iT~vaySpd~~y  501 (603)
T KOG0318|consen  457 EVAVGGQDGKVHVYSLSGDELKE-------------EAKLLEHRAAITDVAYSPDGAY  501 (603)
T ss_pred             EEEEecccceEEEEEecCCcccc-------------eeeeecccCCceEEEECCCCcE
Confidence            99999999999999886544321             2224567888899999999863

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.6e-31  Score=240.06  Aligned_cols=316  Identities=20%  Similarity=0.305  Sum_probs=247.8

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCC
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG   93 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~   93 (350)
                      .-..+|++++-+|   |.-.||.|-.||.|+||+..+...+-++.||+.+|+++.|+..|..|+|||.|+.|.+||+...
T Consensus        63 ~~k~evt~l~~~~---d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E  139 (888)
T KOG0306|consen   63 KKKAEVTCLRSSD---DILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGE  139 (888)
T ss_pred             cccceEEEeeccC---CcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccc
Confidence            3345788887664   8888999999999999999999999999999999999999999999999999999999999776


Q ss_pred             Ceeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEE
Q 018784           94 DEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (350)
Q Consensus        94 ~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i  172 (350)
                      ..+..+ .|+..|+..-|.....++++.+.|+.|++||+++..+ ......|.+.++.+++.+   ..+++++.|+.+++
T Consensus       140 ~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhC-f~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v  215 (888)
T KOG0306|consen  140 EGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHC-FETHVDHRGEIWALVLDE---KLLVTAGTDSELKV  215 (888)
T ss_pred             eeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEeccccee-eeEEecccceEEEEEEec---ceEEEEecCCceEE
Confidence            666666 5899999999998889999999999999999987544 344567888999998764   56777788899999


Q ss_pred             EECCC------------------------CceeEe----------------------e----------------------
Q 018784          173 WDARS------------------------GKIVQT----------------------L----------------------  184 (350)
Q Consensus       173 wd~~~------------------------~~~~~~----------------------~----------------------  184 (350)
                      |++..                        ++.+..                      +                      
T Consensus       216 ~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~  295 (888)
T KOG0306|consen  216 WELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAE  295 (888)
T ss_pred             EEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcc
Confidence            98810                        000000                      0                      


Q ss_pred             ---------------------------------------------------------------------------cCCCC
Q 018784          185 ---------------------------------------------------------------------------ETKSP  189 (350)
Q Consensus       185 ---------------------------------------------------------------------------~~~~~  189 (350)
                                                                                                 .+.+.
T Consensus       296 t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~d  375 (888)
T KOG0306|consen  296 TEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSD  375 (888)
T ss_pred             ccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhh
Confidence                                                                                       00012


Q ss_pred             eEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCC
Q 018784          190 VTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGH  269 (350)
Q Consensus       190 v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h  269 (350)
                      |.+++++.+...++++.++.+++|+..+.++++++...  ...+..+-+.+++++.|...|.+.+||+.....+.+...|
T Consensus       376 VRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AH  453 (888)
T KOG0306|consen  376 VRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAH  453 (888)
T ss_pred             eeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcc
Confidence            45556666666777777889999999999999987654  3333333345799999999999999999999999999999


Q ss_pred             CcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccchh
Q 018784          270 HGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKA  341 (350)
Q Consensus       270 ~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~  341 (350)
                      .+.||+++.+||+..+++||.|.+|++|+...... +..  .-.....-.+...-+.+..|.+..+||||+-
T Consensus       454 dgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~-~~g--t~~k~lsl~~~rtLel~ddvL~v~~Spdgk~  522 (888)
T KOG0306|consen  454 DGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS-VPG--TQKKVLSLKHTRTLELEDDVLCVSVSPDGKL  522 (888)
T ss_pred             ccceeeeeecCCCCceEEecCCcEEEEEeEEEEec-cCc--ccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence            99999999999999999999999999999743322 111  1111122223334567788999999999974

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.7e-31  Score=219.57  Aligned_cols=258  Identities=19%  Similarity=0.307  Sum_probs=211.1

Q ss_pred             eeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCC-Ceeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEE
Q 018784           53 WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG-DEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFD  130 (350)
Q Consensus        53 ~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~-~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd  130 (350)
                      ++..+.||++.|+.+.|+|+|.+|||||.|..|.+|+.... +....+ .|.+.|..+.|.+++..++++|.|.+++.||
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD  118 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence            44567899999999999999999999999999999996432 223333 5999999999999999999999999999999


Q ss_pred             CCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEE-EcCCc
Q 018784          131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSS  209 (350)
Q Consensus       131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~  209 (350)
                      +++++...+. ..|...+.++.-..-+..++.++++|+++++||+|+..+++++....+++++.|..++..+.+ +=|+.
T Consensus       119 ~~tG~~~rk~-k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~  197 (338)
T KOG0265|consen  119 AETGKRIRKH-KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND  197 (338)
T ss_pred             cccceeeehh-ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence            9987665433 556677777764444667899999999999999999999999988999999999987766554 45889


Q ss_pred             EEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEccc----CeeEEeecCCCc----CEEEEEEcCC
Q 018784          210 VKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT----GEQIGCNKGHHG----PVHCVRFSPG  281 (350)
Q Consensus       210 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~----~~~~~~~~~h~~----~v~~l~~sp~  281 (350)
                      |++||++.......+..+..+..-.+..+++..+++-+-|.++++||++.    .+++..+.+|.-    ....++|+|+
T Consensus       198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~  277 (338)
T KOG0265|consen  198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN  277 (338)
T ss_pred             eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence            99999999888877777776666556666799999999999999999874    344666666532    3467889999


Q ss_pred             CCEEEEecCCCcEEEecCCCCCcccCCCCC
Q 018784          282 GESYASGSEDGTIRIWQTNPPNHEENHSGT  311 (350)
Q Consensus       282 ~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~  311 (350)
                      ++++.+|+.|..+++||...........|+
T Consensus       278 ~~~i~ags~dr~vyvwd~~~r~~lyklpGh  307 (338)
T KOG0265|consen  278 GTKITAGSADRFVYVWDTTSRRILYKLPGH  307 (338)
T ss_pred             CCccccccccceEEEeecccccEEEEcCCc
Confidence            999999999999999998765555444443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.5e-32  Score=249.12  Aligned_cols=238  Identities=21%  Similarity=0.325  Sum_probs=196.7

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC-------------------------------------------
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-------------------------------------------   50 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~-------------------------------------------   50 (350)
                      .|++.|+++.|++   ||+|||+|+.|+.|+||.+..                                           
T Consensus       265 ah~gaIw~mKFS~---DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~  341 (712)
T KOG0283|consen  265 AHKGAIWAMKFSH---DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK  341 (712)
T ss_pred             ccCCcEEEEEeCC---CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence            8999999999997   999999999999999998533                                           


Q ss_pred             -----------------CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcC-
Q 018784           51 -----------------GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE-  112 (350)
Q Consensus        51 -----------------~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~-  112 (350)
                                       .+++..|.||.+.|.-+.|+.+ .+|.|+|.|.|||+|++....++..+.|++.|+|++|+| 
T Consensus       342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPv  420 (712)
T KOG0283|consen  342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPV  420 (712)
T ss_pred             ccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEeccc
Confidence                             0234567899999999999854 566799999999999999999999999999999999999 


Q ss_pred             CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC------
Q 018784          113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET------  186 (350)
Q Consensus       113 ~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~------  186 (350)
                      |.+++++|+-|+.+|||++...+.  ...-....-|++++|.|+ +..++.|+.+|.+++|+++..+.....+-      
T Consensus       421 DDryFiSGSLD~KvRiWsI~d~~V--v~W~Dl~~lITAvcy~Pd-Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K  497 (712)
T KOG0283|consen  421 DDRYFISGSLDGKVRLWSISDKKV--VDWNDLRDLITAVCYSPD-GKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK  497 (712)
T ss_pred             CCCcEeecccccceEEeecCcCee--EeehhhhhhheeEEeccC-CceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence            789999999999999999974332  222334467999999876 66777889999999999988776555431      


Q ss_pred             ---CCCeEEEEEecCC--cEEEEEcCCcEEEEECCCcceeeeeecCCC---CceeEecCCCCcEEEEecCCCeEEEEEcc
Q 018784          187 ---KSPVTSAEVSRDG--RYITTADGSSVKFWDANHFGLVKGYNMPCN---TESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (350)
Q Consensus       187 ---~~~v~~~~~~~~~--~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~sg~~d~~i~v~d~~  258 (350)
                         +..|+.+.|.|..  ++|+++.|..|||||+++..++..+....+   .....|.. +|++++++++|..|++|++.
T Consensus       498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS-DGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc-CCCEEEEeecCceEEEEeCC
Confidence               2369999998743  589999999999999988877766654433   34566666 79999999999999999974


Q ss_pred             c
Q 018784          259 T  259 (350)
Q Consensus       259 ~  259 (350)
                      .
T Consensus       577 ~  577 (712)
T KOG0283|consen  577 S  577 (712)
T ss_pred             C
Confidence            3

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=5.5e-30  Score=223.28  Aligned_cols=269  Identities=29%  Similarity=0.497  Sum_probs=217.4

Q ss_pred             eeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECC
Q 018784           54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN  132 (350)
Q Consensus        54 ~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~  132 (350)
                      +.++.+|.++|.++++++++.++++++.||.|++|+..++.....+ .|...+..+.|+|+++++++++.|+.|++|++.
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            3567899999999999999999999999999999999877654444 577888899999999999999999999999998


Q ss_pred             CCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec-CCCCeEEEEEecCCcEEEEEc-CCcE
Q 018784          133 RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTAD-GSSV  210 (350)
Q Consensus       133 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i  210 (350)
                      .... ......+...+.++.|.+. +.++++++.|+.|++||+++++....+. +...+..+.++|++.+++++. ++.|
T Consensus        82 ~~~~-~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i  159 (289)
T cd00200          82 TGEC-VRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI  159 (289)
T ss_pred             cccc-eEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcE
Confidence            6533 3334566778999999865 6677788778999999999888887777 456799999999999988887 8999


Q ss_pred             EEEECCCcceeeeeecCC-CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEec
Q 018784          211 KFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS  289 (350)
Q Consensus       211 ~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs  289 (350)
                      ++||+++.+.+..+..+. ....+.+.+ +++.+++++.|+.|++||+.+++.+..+..|...+.+++|+|++.++++++
T Consensus       160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  238 (289)
T cd00200         160 KLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS  238 (289)
T ss_pred             EEEEccccccceeEecCccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc
Confidence            999999877776665444 334455555 466888888899999999999988888888999999999999999999999


Q ss_pred             CCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccch
Q 018784          290 EDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGK  340 (350)
Q Consensus       290 ~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~  340 (350)
                      .|+.|++|++.........               ..+...|.++.++++|+
T Consensus       239 ~~~~i~i~~~~~~~~~~~~---------------~~~~~~i~~~~~~~~~~  274 (289)
T cd00200         239 EDGTIRVWDLRTGECVQTL---------------SGHTNSVTSLAWSPDGK  274 (289)
T ss_pred             CCCcEEEEEcCCceeEEEc---------------cccCCcEEEEEECCCCC
Confidence            9999999998653322211               12333566777777653

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=2.4e-30  Score=208.98  Aligned_cols=272  Identities=22%  Similarity=0.321  Sum_probs=222.7

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceee--eccCccCCeEEEEECC-CCcEEEEeeCCCeEEEe
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG--TFEGHKGAVWSCCLDA-NALFSASGSADFTAKLW   88 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~--~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vW   88 (350)
                      .++|...|.+|+|+.   +|..||+|+.|+++++|+++..+.++  .+.||.+.|--++|+| ...++++++.|.+|++|
T Consensus        16 ~~~~~~~v~Sv~wn~---~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w   92 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNC---DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW   92 (313)
T ss_pred             hhhhhhcceEEEEcc---cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence            379999999999997   99999999999999999998887665  4578999999999875 56799999999999999


Q ss_pred             eCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784           89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (350)
Q Consensus        89 d~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg  168 (350)
                      |...+++......+..=.-+.|+|+|++++.++.|..|...|..+.......  .....+..+.|..++..++++.+ -|
T Consensus        93 d~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~--~~~~e~ne~~w~~~nd~Fflt~G-lG  169 (313)
T KOG1407|consen   93 DIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE--QFKFEVNEISWNNSNDLFFLTNG-LG  169 (313)
T ss_pred             EeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh--cccceeeeeeecCCCCEEEEecC-Cc
Confidence            9999998888776655566789999999999999999999998765433222  23445777888855555666654 48


Q ss_pred             eEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceeeeeecCCC-CceeEecCCCCcEEEE
Q 018784          169 GVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIA  245 (350)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s  245 (350)
                      +|.|-...+-+++..++.+ ..+.++.|+|+|+++++++ |..+.+||+...-+++.+.-..- ...++|+- ++++|++
T Consensus       170 ~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~~lAS  248 (313)
T KOG1407|consen  170 CVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGRMLAS  248 (313)
T ss_pred             eEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-Ccceeec
Confidence            9999998888999999865 5688899999999998765 77899999988777766654332 23455544 6899999


Q ss_pred             ecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCC
Q 018784          246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSED  291 (350)
Q Consensus       246 g~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~D  291 (350)
                      ||+|..|-|-+..+|+.+..++ +.++-+.++|+|...+||-++.|
T Consensus       249 aSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  249 ASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             cCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence            9999999999999999887665 67788999999999999877665

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.7e-31  Score=209.23  Aligned_cols=250  Identities=24%  Similarity=0.363  Sum_probs=208.6

Q ss_pred             ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEE
Q 018784           52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFD  130 (350)
Q Consensus        52 ~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd  130 (350)
                      +.++.|.+|+++|+++.++-+|++.+|++.|.+||+|++..+..+.++ .|...|..++.+.|...+++|+.|+.+.+||
T Consensus         8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence            345688999999999999999999999999999999999999988887 5888999999999999999999999999999


Q ss_pred             CCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC--ceeEeecC-CCCeEEEEEecCCcEEEEEcC
Q 018784          131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG--KIVQTLET-KSPVTSAEVSRDGRYITTADG  207 (350)
Q Consensus       131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~  207 (350)
                      +++++.. +....|.+.|..+.|. .+..++++|+.|.++++||.|+.  ++++.+.. ...|.++.++. ..+++.+.|
T Consensus        88 V~TGkv~-Rr~rgH~aqVNtV~fN-eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-heIvaGS~D  164 (307)
T KOG0316|consen   88 VNTGKVD-RRFRGHLAQVNTVRFN-EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-HEIVAGSVD  164 (307)
T ss_pred             cccCeee-eecccccceeeEEEec-CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc-cEEEeeccC
Confidence            9987654 4457789999999986 46778999999999999999865  56666654 45677777664 356667779


Q ss_pred             CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEE--EEEcCCCCEE
Q 018784          208 SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHC--VRFSPGGESY  285 (350)
Q Consensus       208 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~--l~~sp~~~~l  285 (350)
                      |++|.||+|.+.+...+..+ ...+.++.+ +++..++++.|+++++.|-.+|+.+..++||...=+.  .+++.....+
T Consensus       165 GtvRtydiR~G~l~sDy~g~-pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV  242 (307)
T KOG0316|consen  165 GTVRTYDIRKGTLSSDYFGH-PITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHV  242 (307)
T ss_pred             CcEEEEEeecceeehhhcCC-cceeEEecC-CCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeE
Confidence            99999999998876655432 234455554 6889999999999999999999999999999886544  4566667889


Q ss_pred             EEecCCCcEEEecCCCCCccc
Q 018784          286 ASGSEDGTIRIWQTNPPNHEE  306 (350)
Q Consensus       286 asgs~Dg~v~vw~~~~~~~~~  306 (350)
                      ++||+||.|++||+-......
T Consensus       243 ~sgSEDG~Vy~wdLvd~~~~s  263 (307)
T KOG0316|consen  243 FSGSEDGKVYFWDLVDETQIS  263 (307)
T ss_pred             EeccCCceEEEEEeccceeee
Confidence            999999999999987655443

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.8e-31  Score=219.93  Aligned_cols=286  Identities=20%  Similarity=0.364  Sum_probs=222.3

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC-
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA-   90 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~-   90 (350)
                      +-||++.|+.|+.....|   ++.++|.|.+.+||.+++|.|+.++.||.++|+++.|++.+.+++|+|.|++..||.. 
T Consensus       144 ~~GHkDGiW~Vaa~~tqp---i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~a  220 (481)
T KOG0300|consen  144 LEGHKDGIWHVAADSTQP---ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAA  220 (481)
T ss_pred             hcccccceeeehhhcCCc---ceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHh
Confidence            469999999998876555   8999999999999999999999999999999999999999999999999999999962 


Q ss_pred             -----CCC--------C--------------------------eeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEE
Q 018784           91 -----LTG--------D--------------------------EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFD  130 (350)
Q Consensus        91 -----~~~--------~--------------------------~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd  130 (350)
                           ...        +                          ++..+ .|...|.++.|-..|+.++++++|++..+||
T Consensus       221 v~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwD  300 (481)
T KOG0300|consen  221 VNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWD  300 (481)
T ss_pred             hcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeee
Confidence                 110        0                          00111 3778899999999999999999999999999


Q ss_pred             CCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC-ceeEeecCC-CCeEEEEEecCCcEEEEEcCC
Q 018784          131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETK-SPVTSAEVSRDGRYITTADGS  208 (350)
Q Consensus       131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~  208 (350)
                      ++++.....+ .+|....+.+. .++.++++++.+.|-+.++||.+.. ..+..++++ ..+++..|..+.+.+.+++|.
T Consensus       301 VEtge~v~~L-tGHd~ELtHcs-tHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDr  378 (481)
T KOG0300|consen  301 VETGEVVNIL-TGHDSELTHCS-THPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDR  378 (481)
T ss_pred             eccCceeccc-cCcchhccccc-cCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCc
Confidence            9987655444 44555565554 4678899999999999999999843 345566654 579999999999999889999


Q ss_pred             cEEEEECCCcce-eeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEE----eecCCCcCEEEEEEcCCC-
Q 018784          209 SVKFWDANHFGL-VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG----CNKGHHGPVHCVRFSPGG-  282 (350)
Q Consensus       209 ~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~----~~~~h~~~v~~l~~sp~~-  282 (350)
                      +|++||+++.+. +.++.......-+..+ ..+.+++.--.+..|++||+...+..+    .-++|...|.|++|..+- 
T Consensus       379 TvKvWdLrNMRsplATIRtdS~~NRvavs-~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp  457 (481)
T KOG0300|consen  379 TVKVWDLRNMRSPLATIRTDSPANRVAVS-KGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHP  457 (481)
T ss_pred             eEEEeeeccccCcceeeecCCccceeEee-cCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCc
Confidence            999999987642 3333322222222222 123466666667789999997655432    346999999999998653 


Q ss_pred             -CEEEEecCCCcEEEecCCCCC
Q 018784          283 -ESYASGSEDGTIRIWQTNPPN  303 (350)
Q Consensus       283 -~~lasgs~Dg~v~vw~~~~~~  303 (350)
                       .-|++++.|..+.-|++..+.
T Consensus       458 ~cnLftcGFDR~v~gW~in~p~  479 (481)
T KOG0300|consen  458 ACNLFTCGFDRMVAGWKINTPT  479 (481)
T ss_pred             ccccccccccceeeeeEecccC
Confidence             348899999999999987654

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-31  Score=214.19  Aligned_cols=241  Identities=22%  Similarity=0.268  Sum_probs=196.2

Q ss_pred             cCCceeEEEecccCCCccEEEEEeCCCCeeEeeC-CCCceeeeccCccCCeEEEEECC-CCcEEEEeeCCCeEEEeeCCC
Q 018784           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG-ETGDWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALT   92 (350)
Q Consensus        15 H~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~-~~~~~~~~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~   92 (350)
                      -.+.+.+|++++.  ....+++++.||+++|||. ....++..++.|...|.++.+++ +...++++|.|++||+|+...
T Consensus        59 ~~D~LfdV~Wse~--~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r  136 (311)
T KOG0277|consen   59 TEDGLFDVAWSEN--HENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR  136 (311)
T ss_pred             cccceeEeeecCC--CcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence            4667889999873  3458999999999999995 34568889999999999999986 456678889999999999988


Q ss_pred             CCeeeee-eccccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784           93 GDEKHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (350)
Q Consensus        93 ~~~~~~~-~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i  170 (350)
                      ...+.++ .|+..|+..+|+| ..+++++++.|+++++||++.+..... +..|...+.++.|++.+..++++|+.|+.|
T Consensus       137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~v  215 (311)
T KOG0277|consen  137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLV  215 (311)
T ss_pred             CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceE
Confidence            8877776 5899999999999 578899999999999999987755444 667778999999999999999999999999


Q ss_pred             EEEECCCCc-eeEeecCC-CCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecC
Q 018784          171 RLWDARSGK-IVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE  248 (350)
Q Consensus       171 ~iwd~~~~~-~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~  248 (350)
                      +.||+|+-+ ++..+..+ -.|..+.|+|.                                        ...+|++++.
T Consensus       216 r~wDir~~r~pl~eL~gh~~AVRkvk~Sph----------------------------------------~~~lLaSasY  255 (311)
T KOG0277|consen  216 RGWDIRNLRTPLFELNGHGLAVRKVKFSPH----------------------------------------HASLLASASY  255 (311)
T ss_pred             EEEehhhccccceeecCCceEEEEEecCcc----------------------------------------hhhHhhhccc
Confidence            999998754 34444332 24455555542                                        3567888888


Q ss_pred             CCeEEEEEcccCe-eEEeecCCCcCEEEEEEcCC-CCEEEEecCCCcEEEec
Q 018784          249 DMWVHVFDFHTGE-QIGCNKGHHGPVHCVRFSPG-GESYASGSEDGTIRIWQ  298 (350)
Q Consensus       249 d~~i~v~d~~~~~-~~~~~~~h~~~v~~l~~sp~-~~~lasgs~Dg~v~vw~  298 (350)
                      |-++++||...++ .+.+..-|+.-|..+.||+- +.++|+.+.|+.++||+
T Consensus       256 DmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  256 DMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             cceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence            9999999887554 44555678888999999974 56899999999999997

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=6.2e-32  Score=230.26  Aligned_cols=238  Identities=21%  Similarity=0.316  Sum_probs=199.1

Q ss_pred             cCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee-eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCe
Q 018784           61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR  139 (350)
Q Consensus        61 ~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~-~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~  139 (350)
                      +..|..|.|.|+|+.|++|+..|.+-+|+..+..-.. ...|...|+++.|++++.++++|+.+|.|++|+..... ...
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~  174 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKI  174 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHH
Confidence            3468899999999999999999999999975433222 23699999999999999999999999999999986432 223


Q ss_pred             eecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEE-cCCcEEEEECCC
Q 018784          140 EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANH  217 (350)
Q Consensus       140 ~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~  217 (350)
                      ...+|...|++++|+|.|. .+++|++||+|+|||.+..+....+..+ -.+.+++|+|.-.+++++ .|..|++||.++
T Consensus       175 ~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS  253 (464)
T KOG0284|consen  175 IQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS  253 (464)
T ss_pred             hhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence            3345568999999998554 5779999999999999988777777654 579999999987666654 578999999999


Q ss_pred             cceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCC-CEEEEecCCCcEEE
Q 018784          218 FGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGG-ESYASGSEDGTIRI  296 (350)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~-~~lasgs~Dg~v~v  296 (350)
                      +.++.++..+.+.....-..+++++|+++|.|..+++||+++-+.+.++++|..-|+++.|+|-. .+|.+|+.||.|..
T Consensus       254 g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh  333 (464)
T KOG0284|consen  254 GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVH  333 (464)
T ss_pred             cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEE
Confidence            99998887776665444344457999999999999999999989999999999999999999964 57889999999999


Q ss_pred             ecCC
Q 018784          297 WQTN  300 (350)
Q Consensus       297 w~~~  300 (350)
                      |.+.
T Consensus       334 ~~v~  337 (464)
T KOG0284|consen  334 WVVG  337 (464)
T ss_pred             Eecc
Confidence            9987

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.98  E-value=6.3e-32  Score=234.74  Aligned_cols=258  Identities=23%  Similarity=0.368  Sum_probs=209.3

Q ss_pred             CceeeeccCccCCeEEEEECC-CCcEEEEeeCCCeEEEeeCCC-CCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEE
Q 018784           51 GDWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALT-GDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILR  127 (350)
Q Consensus        51 ~~~~~~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~-~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~  127 (350)
                      .+.+.++.||+..|.++.|.| .+.+|+|+|.|+.|+||++.. +.+++++ .|+.+|+.++|+++|..++|+|.|+.++
T Consensus       204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK  283 (503)
T KOG0282|consen  204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK  283 (503)
T ss_pred             HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence            355778999999999999988 899999999999999999876 6677665 6999999999999999999999999999


Q ss_pred             EEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEE-EE
Q 018784          128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYIT-TA  205 (350)
Q Consensus       128 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~  205 (350)
                      +||++++......  +....+.++.|.|++++++++|+.|+.|+.||+|+++.++....+ .++..+.|-++|+.++ ++
T Consensus       284 lwDtETG~~~~~f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS  361 (503)
T KOG0282|consen  284 LWDTETGQVLSRF--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS  361 (503)
T ss_pred             eeccccceEEEEE--ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence            9999987654433  334567888888878799999999999999999999988888754 7899999999987655 55


Q ss_pred             cCCcEEEEECCCcceeeeeecCCC--CceeEecCCCCcEEEEecCCCeEEEEEcccCee---EEeecCCC--cCEEEEEE
Q 018784          206 DGSSVKFWDANHFGLVKGYNMPCN--TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ---IGCNKGHH--GPVHCVRF  278 (350)
Q Consensus       206 ~~~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~---~~~~~~h~--~~v~~l~~  278 (350)
                      +++.+++|+.+....++....+..  ..++...| .+..+++-+.|+.|.+|.+...-.   -..+.||.  +.-..+.|
T Consensus       362 Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f  440 (503)
T KOG0282|consen  362 DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF  440 (503)
T ss_pred             cCccEEEEEcCCCccchhhcchhhccCcceecCC-CCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence            678999999988766654433222  23344555 578999999999999998754322   33567885  44677899


Q ss_pred             cCCCCEEEEecCCCcEEEecCCCCCcccCCCCC
Q 018784          279 SPGGESYASGSEDGTIRIWQTNPPNHEENHSGT  311 (350)
Q Consensus       279 sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~  311 (350)
                      ||||.+|+||+.||.+.+||..+-.......++
T Consensus       441 SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah  473 (503)
T KOG0282|consen  441 SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH  473 (503)
T ss_pred             cCCCCeEEeecCCccEEEeechhhhhhhccccC
Confidence            999999999999999999999876665544443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.98  E-value=5.2e-32  Score=226.64  Aligned_cols=232  Identities=18%  Similarity=0.382  Sum_probs=188.4

Q ss_pred             ccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC
Q 018784           60 HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP  138 (350)
Q Consensus        60 H~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~  138 (350)
                      -...|+|+.+  |...++||..|.+|+|||..+..+...+ .|++.|.|+.|.  ...+++|+.|.+|++||+.+++...
T Consensus       196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~  271 (499)
T KOG0281|consen  196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN  271 (499)
T ss_pred             cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence            3467888887  4567789999999999999888777665 799999999886  4489999999999999999877654


Q ss_pred             eeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCcee---Eeec-CCCCeEEEEEecCCcEEEE-EcCCcEEEE
Q 018784          139 REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV---QTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFW  213 (350)
Q Consensus       139 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~---~~~~-~~~~v~~~~~~~~~~~l~~-~~~~~i~vw  213 (350)
                      .. -+|...|..+.|+   +.++++|+.|.++.+||+.+...+   +.+. +...++.+.|+.  +++++ +.|.+|++|
T Consensus       272 tl-ihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW  345 (499)
T KOG0281|consen  272 TL-IHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVW  345 (499)
T ss_pred             HH-hhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEE
Confidence            44 5677778888875   457889999999999999876432   2233 346778777765  46655 468899999


Q ss_pred             ECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCc
Q 018784          214 DANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGT  293 (350)
Q Consensus       214 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~  293 (350)
                      ++.+...++++..+.....+.  ...++++++|+.|.+|++||+..|.+++.++||+.-|.++.|  |.+.++||+.||+
T Consensus       346 ~~st~efvRtl~gHkRGIACl--QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGk  421 (499)
T KOG0281|consen  346 STSTCEFVRTLNGHKRGIACL--QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK  421 (499)
T ss_pred             eccceeeehhhhcccccceeh--hccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccce
Confidence            999999999887765443332  224789999999999999999999999999999999999999  5678999999999


Q ss_pred             EEEecCCCCCcc
Q 018784          294 IRIWQTNPPNHE  305 (350)
Q Consensus       294 v~vw~~~~~~~~  305 (350)
                      |++||+......
T Consensus       422 ikvWdl~aaldp  433 (499)
T KOG0281|consen  422 IKVWDLQAALDP  433 (499)
T ss_pred             EEEEecccccCC
Confidence            999999765544

>PTZ00421 coronin; Provisional

Probab=99.98  E-value=2.1e-29  Score=234.09  Aligned_cols=214  Identities=21%  Similarity=0.293  Sum_probs=169.1

Q ss_pred             eeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC-------ceeeeccCccCCeEEEEECCCC-cEEEEee
Q 018784            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDANA-LFSASGS   80 (350)
Q Consensus         9 ~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~-------~~~~~l~gH~~~V~~v~~~~~~-~~l~s~s   80 (350)
                      +.++.||+++|.+++|+|.  ++.+||+||.|++|+|||+.++       +++..|.+|...|.+++|+|++ .+|+|++
T Consensus        68 ~~~l~GH~~~V~~v~fsP~--d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs  145 (493)
T PTZ00421         68 PPILLGQEGPIIDVAFNPF--DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG  145 (493)
T ss_pred             CceEeCCCCCEEEEEEcCC--CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe
Confidence            4457899999999999973  5679999999999999998764       3567899999999999999985 6999999


Q ss_pred             CCCeEEEeeCCCCCeeeeee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCC-cEEEEEEeCCCC
Q 018784           81 ADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG-SIRTVAWLHSDQ  158 (350)
Q Consensus        81 ~Dg~v~vWd~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~  158 (350)
                      .|++|+|||+.++.....+. |...|.+++|+|++.+|++++.|++|++||+.++..... ...|.+ ....+.|.+..+
T Consensus       146 ~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~t-l~~H~~~~~~~~~w~~~~~  224 (493)
T PTZ00421        146 ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS-VEAHASAKSQRCLWAKRKD  224 (493)
T ss_pred             CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEE-EecCCCCcceEEEEcCCCC
Confidence            99999999999888777664 888999999999999999999999999999987654333 334443 345667777666


Q ss_pred             cEEEEE---eCCCeEEEEECCCCc-eeEeec--CCCCeEEEEEecCCcEEEEE--cCCcEEEEECCCcceeeeee
Q 018784          159 TILSSC---TDSGGVRLWDARSGK-IVQTLE--TKSPVTSAEVSRDGRYITTA--DGSSVKFWDANHFGLVKGYN  225 (350)
Q Consensus       159 ~~~~s~---~~dg~i~iwd~~~~~-~~~~~~--~~~~v~~~~~~~~~~~l~~~--~~~~i~vwd~~~~~~~~~~~  225 (350)
                      .++++|   +.|++|++||+++.. ++....  ....+....|++++.+++++  .|+.|++||+++...+....
T Consensus       225 ~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~  299 (493)
T PTZ00421        225 LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS  299 (493)
T ss_pred             eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence            666554   357999999998754 333333  23445556788999877654  48899999999887665543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.98  E-value=4.6e-30  Score=231.78  Aligned_cols=279  Identities=18%  Similarity=0.335  Sum_probs=229.2

Q ss_pred             cccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceee--eccCccCCeEE-EEECC-CCcEEEEee
Q 018784            5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG--TFEGHKGAVWS-CCLDA-NALFSASGS   80 (350)
Q Consensus         5 ~~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~--~l~gH~~~V~~-v~~~~-~~~~l~s~s   80 (350)
                      ++....++.||+..|..+++.    ++..++++|.|+++++|+....+++.  .+.+|.+-|.. +++.+ ++-.+++|+
T Consensus         3 ~Y~ls~~l~gH~~DVr~v~~~----~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~   78 (745)
T KOG0301|consen    3 QYKLSHELEGHKSDVRAVAVT----DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGG   78 (745)
T ss_pred             cceeEEEeccCccchheeEec----CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeec
Confidence            466778889999999999876    45679999999999999987666653  57889998876 78764 555689999


Q ss_pred             CCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCc
Q 018784           81 ADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (350)
Q Consensus        81 ~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (350)
                      .|++|.+|......+..++ .|...|+++....++. +++||+|.++++|....   ......+|...|++++..+.+  
T Consensus        79 ~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~--  152 (745)
T KOG0301|consen   79 MDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN--  152 (745)
T ss_pred             ccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh---hhcccCCcchheeeeeecCCC--
Confidence            9999999999988888876 6999999999887887 89999999999998753   223367899999999998765  


Q ss_pred             EEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCC-ceeEecC
Q 018784          160 ILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNT-ESASLEP  237 (350)
Q Consensus       160 ~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~  237 (350)
                      .+++|+.|.+|++|.-  ++.+.++..| ..|..+++-+++.++.+++||.|++|++ ++.++..+..+.+. .+++. .
T Consensus       153 ~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~-~  228 (745)
T KOG0301|consen  153 TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISM-A  228 (745)
T ss_pred             cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEe-c
Confidence            6789999999999974  6777888765 5789999999999999999999999999 56666666655443 34442 3


Q ss_pred             CCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          238 KLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       238 ~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      ..+..++++++|+++++|+..  ++...+.-....||++.+-++|. +++|++||.||||..+
T Consensus       229 ~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  229 LSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             CCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            346899999999999999976  55555554555899999999887 7789999999999876

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.98  E-value=4.7e-30  Score=216.04  Aligned_cols=270  Identities=22%  Similarity=0.364  Sum_probs=212.3

Q ss_pred             eeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEEC
Q 018784           53 WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDL  131 (350)
Q Consensus        53 ~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~  131 (350)
                      -+.+|..|+++|.+++.+|+..++||||.|....+|++.++.....+ .|+..|.++.|+.+|.+||||+-+|.|+||++
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            45689999999999999999999999999999999999999866655 69999999999999999999999999999999


Q ss_pred             CCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEE-cCCc
Q 018784          132 NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSS  209 (350)
Q Consensus       132 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~  209 (350)
                      .++....... .....+.-+.|. +...+++.|+.||.+.+|.+.++...+.+.. ..++++-.|.|+|+.+.++ ++++
T Consensus       136 stg~~~~~~~-~e~~dieWl~WH-p~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt  213 (399)
T KOG0296|consen  136 STGGEQWKLD-QEVEDIEWLKWH-PRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT  213 (399)
T ss_pred             ccCceEEEee-cccCceEEEEec-ccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence            8765544443 233445556665 4778899999999999999998766666665 5689999999999887665 6899


Q ss_pred             EEEEECCCcceeeeee------cCCCC---------------c-----------eeEecC--------------------
Q 018784          210 VKFWDANHFGLVKGYN------MPCNT---------------E-----------SASLEP--------------------  237 (350)
Q Consensus       210 i~vwd~~~~~~~~~~~------~~~~~---------------~-----------~~~~~~--------------------  237 (350)
                      |++|++.+..++....      .++..               .           ....++                    
T Consensus       214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~  293 (399)
T KOG0296|consen  214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP  293 (399)
T ss_pred             EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence            9999999987765544      11100               0           000000                    


Q ss_pred             --CCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCCCCcc
Q 018784          238 --KLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQ  315 (350)
Q Consensus       238 --~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~  315 (350)
                        ..-.++++|+-||+|.|||+...+..+.+ .|+.+|..+.|-+ ..+|++++.||.|++||.+++.            
T Consensus       294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~------------  359 (399)
T KOG0296|consen  294 SSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQ------------  359 (399)
T ss_pred             cccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC-cchheeeccCceEEeeeccccc------------
Confidence              01236888999999999999876655444 5888999999998 7899999999999999876544            


Q ss_pred             ccccccccccceeeeeeEEEcccchh
Q 018784          316 TGKLKASTDEVTRKIEGFHINKEGKA  341 (350)
Q Consensus       316 ~~~~~~~~~~~~~~i~~~~~~~~g~~  341 (350)
                         ++..+..+...|..|.++|+++.
T Consensus       360 ---l~~~y~GH~~~Il~f~ls~~~~~  382 (399)
T KOG0296|consen  360 ---LKFTYTGHQMGILDFALSPQKRL  382 (399)
T ss_pred             ---eEEEEecCchheeEEEEcCCCcE
Confidence               45555666777888888887764

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=9.5e-30  Score=206.51  Aligned_cols=237  Identities=21%  Similarity=0.379  Sum_probs=187.1

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC--CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~--~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      ||+..|+.++|+|   .|++||+||.|.++-||.-+.  .+++.+|+||.+.|.+++|+++|.+|||+|.|++|.||++.
T Consensus        59 ~hkrsVRsvAwsp---~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d  135 (312)
T KOG0645|consen   59 GHKRSVRSVAWSP---HGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID  135 (312)
T ss_pred             cchheeeeeeecC---CCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec
Confidence            8999999999987   999999999999999999664  47789999999999999999999999999999999999987


Q ss_pred             CCCee---eee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCC-CCC-CCeeecCCCCcEEEEEEeCCCCcEEEEEe
Q 018784           92 TGDEK---HSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR-PDA-PPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (350)
Q Consensus        92 ~~~~~---~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~-~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~s~~  165 (350)
                      ...+.   ..+ .|...|..+.|||...+|+++|.|.+|++|+-.. ..- ....+..|.+.|.+++|.+.+ ..+++|+
T Consensus       136 eddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~s  214 (312)
T KOG0645|consen  136 EDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-SRLVSCS  214 (312)
T ss_pred             CCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC-ceEEEec
Confidence            55533   333 5999999999999999999999999999998653 221 123456777899999997654 5678999


Q ss_pred             CCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCc------ceeeee--ecCCCCceeEecC
Q 018784          166 DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHF------GLVKGY--NMPCNTESASLEP  237 (350)
Q Consensus       166 ~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~------~~~~~~--~~~~~~~~~~~~~  237 (350)
                      +|++++||...+.   ....+..++..+.|. ++.+..++.|+.|++|-....      .++...  .......++...|
T Consensus       215 dD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p  290 (312)
T KOG0645|consen  215 DDGTVSIWRLYTD---LSGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNP  290 (312)
T ss_pred             CCcceEeeeeccC---cchhcccceEeeeec-ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcC
Confidence            9999999986622   112234567888888 777777788899999965431      111100  1112345666777


Q ss_pred             CCCcEEEEecCCCeEEEEEcc
Q 018784          238 KLGNIFIAGGEDMWVHVFDFH  258 (350)
Q Consensus       238 ~~~~~l~sg~~d~~i~v~d~~  258 (350)
                      ...+.|++|+.||.|++|.+.
T Consensus       291 ~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  291 KVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCCCceeecCCCceEEEEEec
Confidence            667899999999999999864

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.3e-29  Score=230.68  Aligned_cols=283  Identities=22%  Similarity=0.311  Sum_probs=237.6

Q ss_pred             eEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (350)
Q Consensus        10 ~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd   89 (350)
                      +...||-..|..++||.   |...++||+. ++++||+.++.++++++..  +-+.+..|-|-++++++|...|.+.++|
T Consensus       367 i~~~GHR~dVRsl~vS~---d~~~~~Sga~-~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfd  440 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSS---DSILLASGAG-ESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFD  440 (888)
T ss_pred             eeeccchhheeEEEeec---CceeeeecCC-CcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEE
Confidence            34579999999999986   7777777655 7899999999999999986  4788999999999999999999999999


Q ss_pred             CCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCC-----CCCCC------eeecCCCCcEEEEEEeCCC
Q 018784           90 ALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR-----PDAPP------REVGNSSGSIRTVAWLHSD  157 (350)
Q Consensus        90 ~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~-----~~~~~------~~~~~~~~~v~~~~~~~~~  157 (350)
                      +.......+. .|.+.+.+++.+||++.+++||.|.+|++||..-     +....      .....-...|.++.++| +
T Consensus       441 laS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-d  519 (888)
T KOG0306|consen  441 LASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-D  519 (888)
T ss_pred             eehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-C
Confidence            9877655544 6999999999999999999999999999999531     11111      01123356788898875 6


Q ss_pred             CcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCC-ceeE
Q 018784          158 QTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNT-ESAS  234 (350)
Q Consensus       158 ~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~-~~~~  234 (350)
                      +++++.+--|++|++|=+.+-+....+.+| -||.++.++||+++++++ .|..|++|-+.=+.+-+.+..+... ..+.
T Consensus       520 gk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~  599 (888)
T KOG0306|consen  520 GKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQ  599 (888)
T ss_pred             CcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEE
Confidence            677777888999999999999888887765 599999999999998776 4899999988777777776655444 4556


Q ss_pred             ecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       235 ~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      |.| ....+.+++.|+.|+-||-...+++..+.+|...|+|++.+|+|.+++|+|.|..|++|...
T Consensus       600 F~P-~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t  664 (888)
T KOG0306|consen  600 FLP-KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT  664 (888)
T ss_pred             Ecc-cceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence            666 46889999999999999999999999999999999999999999999999999999999754

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=5.3e-30  Score=238.45  Aligned_cols=255  Identities=20%  Similarity=0.332  Sum_probs=206.0

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      +.||++.|++++|..   .+.+|++||.|.++++||..+|++..+|.||++.|.++..  ....+++||.|.+|++|++.
T Consensus       245 l~GH~g~V~~l~~~~---~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~  319 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPS---GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVT  319 (537)
T ss_pred             ccCCCCCceeEEEec---CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEecc
Confidence            479999999999974   4679999999999999999999999999999999987776  45677889999999999999


Q ss_pred             CCCeeeeee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784           92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (350)
Q Consensus        92 ~~~~~~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i  170 (350)
                      ++..+..+. |...|+++.++  +.++++|+.|++|++||+...+.... ...|.+.|+++.+...  ..+++|+.|++|
T Consensus       320 n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~s-l~gH~~~V~sl~~~~~--~~~~Sgs~D~~I  394 (537)
T KOG0274|consen  320 NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKS-LSGHTGRVYSLIVDSE--NRLLSGSLDTTI  394 (537)
T ss_pred             CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeee-ecCCcceEEEEEecCc--ceEEeeeeccce
Confidence            999999987 99999999998  88999999999999999986655444 4559999999965432  778899999999


Q ss_pred             EEEECCCC-ceeEeecCCCCeEEEEEecCCcEEEE-EcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecC
Q 018784          171 RLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE  248 (350)
Q Consensus       171 ~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~  248 (350)
                      ++||+++. +++.++.++..+.. .+...+++|++ +.|++|++||...+++++.+..+ ....+.+.......+++++.
T Consensus       395 kvWdl~~~~~c~~tl~~h~~~v~-~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~~~~il~s~~  472 (537)
T KOG0274|consen  395 KVWDLRTKRKCIHTLQGHTSLVS-SLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALGKEEILCSSD  472 (537)
T ss_pred             EeecCCchhhhhhhhcCCccccc-ccccccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecCcceEEEEec
Confidence            99999999 99999988776552 23334455554 46899999999999999888775 11122221111478999999


Q ss_pred             CCeEEEEEcccCeeEEeecCCC-cCEEEEEE
Q 018784          249 DMWVHVFDFHTGEQIGCNKGHH-GPVHCVRF  278 (350)
Q Consensus       249 d~~i~v~d~~~~~~~~~~~~h~-~~v~~l~~  278 (350)
                      |+++++||++++.....+-.+. .....+++
T Consensus       473 ~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~  503 (537)
T KOG0274|consen  473 DGSVKLWDLRSGTLIRTLLSTDLGATWGVAP  503 (537)
T ss_pred             CCeeEEEecccCchhhhhhhccccccccccc
Confidence            9999999999998877663333 23344444

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.8e-29  Score=233.22  Aligned_cols=284  Identities=19%  Similarity=0.331  Sum_probs=209.1

Q ss_pred             EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~   90 (350)
                      .|-+|.+||++++|+|..|   +++||+.|-+|++|+.+..+++.+|.||-+-|+.+.|++.-..++|+|.|.|||||+-
T Consensus        46 rFdeHdGpVRgv~FH~~qp---lFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNw  122 (1202)
T KOG0292|consen   46 RFDEHDGPVRGVDFHPTQP---LFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNW  122 (1202)
T ss_pred             hhhccCCccceeeecCCCC---eEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEec
Confidence            3569999999999998544   9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCC---CCCCe-------------------------ee
Q 018784           91 LTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP---DAPPR-------------------------EV  141 (350)
Q Consensus        91 ~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~---~~~~~-------------------------~~  141 (350)
                      .+++++..+ .|+..|.|..|+|...+++++|-|.+|||||+..-   ...+.                         ..
T Consensus       123 qsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL  202 (1202)
T KOG0292|consen  123 QSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL  202 (1202)
T ss_pred             cCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee
Confidence            999999887 59999999999999999999999999999997421   11000                         11


Q ss_pred             cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCce--eEe-ecCCCCeEEEEEecCCcEE-EEEcCCcEEEEECCC
Q 018784          142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI--VQT-LETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANH  217 (350)
Q Consensus       142 ~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~--~~~-~~~~~~v~~~~~~~~~~~l-~~~~~~~i~vwd~~~  217 (350)
                      .+|...|.-++|. +.-.+++||++|+.|++|.+...+.  +-+ -.+.+.|.++-|+|...++ ..+.|+.||+||+.+
T Consensus       203 EGHDRGVNwaAfh-pTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k  281 (1202)
T KOG0292|consen  203 EGHDRGVNWAAFH-PTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK  281 (1202)
T ss_pred             cccccccceEEec-CCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence            2345556666664 4567899999999999999876543  222 2356789999999976655 456799999999998


Q ss_pred             cceeeeeecCCCC-ceeEecCCCCcEEEEecC--------------------------CCeEEEEEcccCee--EEeecC
Q 018784          218 FGLVKGYNMPCNT-ESASLEPKLGNIFIAGGE--------------------------DMWVHVFDFHTGEQ--IGCNKG  268 (350)
Q Consensus       218 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~sg~~--------------------------d~~i~v~d~~~~~~--~~~~~~  268 (350)
                      ...++++.-.... ..+..+| ..+++++|-.                          |..|+-+|+.+.+.  +..++.
T Consensus       282 Rt~v~tfrrendRFW~laahP-~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~  360 (1202)
T KOG0292|consen  282 RTSVQTFRRENDRFWILAAHP-ELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRR  360 (1202)
T ss_pred             ccceeeeeccCCeEEEEEecC-CcceeeeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccC
Confidence            8887777543332 2233333 2344444332                          44455555544322  222222


Q ss_pred             C---CcCEEEEEEcCCCCE-EEEecCCC-cEEEecC
Q 018784          269 H---HGPVHCVRFSPGGES-YASGSEDG-TIRIWQT  299 (350)
Q Consensus       269 h---~~~v~~l~~sp~~~~-lasgs~Dg-~v~vw~~  299 (350)
                      .   ..++.+|.++|.... +++...|+ .--++.+
T Consensus       361 ~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~i  396 (1202)
T KOG0292|consen  361 PGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQI  396 (1202)
T ss_pred             CCcccCCcceeeeccccCeEEEEeccCCCeEEEEEe
Confidence            2   257889999997554 44444443 4444444

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.4e-30  Score=237.10  Aligned_cols=246  Identities=21%  Similarity=0.358  Sum_probs=202.1

Q ss_pred             ecc-CccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCC----------------------------Ce-----------
Q 018784           56 TFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDALTG----------------------------DE-----------   95 (350)
Q Consensus        56 ~l~-gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~----------------------------~~-----------   95 (350)
                      .+. .|.++|+++.|++||+||||||.|+.||||.+...                            ..           
T Consensus       261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence            445 89999999999999999999999999999976440                            00           


Q ss_pred             ---------------------ee-eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEE
Q 018784           96 ---------------------KH-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAW  153 (350)
Q Consensus        96 ---------------------~~-~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~  153 (350)
                                           .. ...|...|..+.|+.++ +|++++.|.|||+|++...++..  .-.|..-|+|++|
T Consensus       341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~--~F~HndfVTcVaF  417 (712)
T KOG0283|consen  341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLK--VFSHNDFVTCVAF  417 (712)
T ss_pred             cccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceee--EEecCCeeEEEEe
Confidence                                 00 00277889999999765 78999999999999998655433  3468889999999


Q ss_pred             eCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceeeeeecCC----
Q 018784          154 LHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPC----  228 (350)
Q Consensus       154 ~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~~~~~~~----  228 (350)
                      .|-|.+++++|+-|++||||++...+.+.-...+.-|+++++.|||++++.|. .|.+++|+....+.........    
T Consensus       418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K  497 (712)
T KOG0283|consen  418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK  497 (712)
T ss_pred             cccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence            99999999999999999999999888877777778899999999999987664 8999999998877665544321    


Q ss_pred             -----CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcC--EEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784          229 -----NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGP--VHCVRFSPGGESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       229 -----~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~--v~~l~~sp~~~~lasgs~Dg~v~vw~~~~  301 (350)
                           ....+.+.+.....+++.+.|..|||||+++-.++..++|+...  =....|+.||++++++|+|.-|+||++..
T Consensus       498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~  577 (712)
T KOG0283|consen  498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS  577 (712)
T ss_pred             cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence                 24556677666667888899999999999988888888876543  35678999999999999999999999865


Q ss_pred             CCc
Q 018784          302 PNH  304 (350)
Q Consensus       302 ~~~  304 (350)
                      ...
T Consensus       578 ~~~  580 (712)
T KOG0283|consen  578 FNS  580 (712)
T ss_pred             Ccc
Confidence            554

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.3e-29  Score=209.75  Aligned_cols=244  Identities=18%  Similarity=0.300  Sum_probs=206.3

Q ss_pred             eeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCC--eEEEeeCCCeEEEE
Q 018784           53 WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTH--LLLTGGFEKILRIF  129 (350)
Q Consensus        53 ~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~--~l~sg~~d~~v~vw  129 (350)
                      ++..+..|.++|.++++  ++.++||||.|-+|+|||..+..+...+ .|.+.|+++.|.+...  .|++|+.||.|.+|
T Consensus        35 ~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw  112 (362)
T KOG0294|consen   35 PLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW  112 (362)
T ss_pred             ccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence            46788999999999998  5899999999999999999888776654 7999999999988765  89999999999999


Q ss_pred             ECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCc
Q 018784          130 DLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSS  209 (350)
Q Consensus       130 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~  209 (350)
                      +..+.. ....+..|.+.|+.++. +|.++++++-+.|+.+++||+-.|+.-..+......+.+.|+|.|.+++.+....
T Consensus       113 ~~~~W~-~~~slK~H~~~Vt~lsi-HPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~  190 (362)
T KOG0294|consen  113 RVGSWE-LLKSLKAHKGQVTDLSI-HPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK  190 (362)
T ss_pred             EcCCeE-EeeeecccccccceeEe-cCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE
Confidence            998653 34556788889999986 5677888899999999999999998777777666667799999999888887788


Q ss_pred             EEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEc--CCCCEEEE
Q 018784          210 VKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFS--PGGESYAS  287 (350)
Q Consensus       210 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s--p~~~~las  287 (350)
                      |-+|.+.+-...+....+..+.++.  +.++.+|++|+.|+.|.+||.++..++..+.+|...|.++.+-  |.+.+|+|
T Consensus       191 i~i~q~d~A~v~~~i~~~~r~l~~~--~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvT  268 (362)
T KOG0294|consen  191 IDIYQLDNASVFREIENPKRILCAT--FLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVT  268 (362)
T ss_pred             EEEEecccHhHhhhhhccccceeee--ecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEE
Confidence            9999988877666665553333333  3357899999999999999999999999999999999999853  67889999


Q ss_pred             ecCCCcEEEecCCCC
Q 018784          288 GSEDGTIRIWQTNPP  302 (350)
Q Consensus       288 gs~Dg~v~vw~~~~~  302 (350)
                      +|+||.|++||++..
T Consensus       269 aSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  269 ASSDGFIKVWDIDME  283 (362)
T ss_pred             eccCceEEEEEcccc
Confidence            999999999998644

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1e-29  Score=228.77  Aligned_cols=247  Identities=21%  Similarity=0.351  Sum_probs=213.4

Q ss_pred             EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccC-ccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-HKGAVWSCCLDANALFSASGSADFTAKLWD   89 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~g-H~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd   89 (350)
                      .|..+.+.|+++.|++   +|.+||.|..+|.+.|||.+..+.+.++.+ |...|-+++|.  ...+.+|+.|+.|..+|
T Consensus       212 l~~~~~~~vtSv~ws~---~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~d  286 (484)
T KOG0305|consen  212 LCSFGEELVTSVKWSP---DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHD  286 (484)
T ss_pred             eEecCCCceEEEEECC---CCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEE
Confidence            3455588999999886   999999999999999999999999999999 99999999997  77889999999999999


Q ss_pred             CCCCCeeee-e-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe--
Q 018784           90 ALTGDEKHS-F-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT--  165 (350)
Q Consensus        90 ~~~~~~~~~-~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~--  165 (350)
                      +...+.... + .|...|..+.|++++.+||+|+.|+.+.|||.... .+......|.+.|.+++|+|-...+||+|+  
T Consensus       287 vR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~-~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs  365 (484)
T KOG0305|consen  287 VRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP-EPKFTFTEHTAAVKALAWCPWQSGLLATGGGS  365 (484)
T ss_pred             EecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc-cccEEEeccceeeeEeeeCCCccCceEEcCCC
Confidence            877664433 3 58999999999999999999999999999999543 345566789999999999998888888764  


Q ss_pred             CCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEE
Q 018784          166 DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA  245 (350)
Q Consensus       166 ~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  245 (350)
                      .|+.|++||+.+++.+..+...+.|.++.|++..+-++++.                                       
T Consensus       366 ~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sth---------------------------------------  406 (484)
T KOG0305|consen  366 ADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTH---------------------------------------  406 (484)
T ss_pred             cccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEec---------------------------------------
Confidence            67899999999999999999999999999998765444332                                       


Q ss_pred             ecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCC
Q 018784          246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPP  302 (350)
Q Consensus       246 g~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~  302 (350)
                      |..++.|.||++.+.+.+..+.+|...|..++++|||..+++|+.|.++++|++-..
T Consensus       407 G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  407 GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            222445777777777778889999999999999999999999999999999998654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=1.9e-29  Score=216.64  Aligned_cols=277  Identities=22%  Similarity=0.314  Sum_probs=230.2

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH   97 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~   97 (350)
                      .+.++...|   ....++||+.|.++.++|..+.+.+.+|+||+..|..+.++++....++++.|..|+||......+..
T Consensus       221 gi~ald~~~---s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~  297 (506)
T KOG0289|consen  221 GITALDIIP---SSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT  297 (506)
T ss_pred             CeeEEeecC---CCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc
Confidence            455554444   35589999999999999999999999999999999999999999999999999999999987665444


Q ss_pred             -eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecC-CCCcEEEEEEeCCCCcEEEEEeCCCeEEEEEC
Q 018784           98 -SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN-SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (350)
Q Consensus        98 -~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~  175 (350)
                       ...|...|+.+..+|.|.+|++++.|+++...|+.++......... ..-.+++.+| |+|+.++.+|..|+.|+|||+
T Consensus       298 ~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~f-HpDgLifgtgt~d~~vkiwdl  376 (506)
T KOG0289|consen  298 SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAF-HPDGLIFGTGTPDGVVKIWDL  376 (506)
T ss_pred             ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeE-cCCceEEeccCCCceEEEEEc
Confidence             3469999999999999999999999999999999876654433221 2233555554 678999999999999999999


Q ss_pred             CCCceeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCC--CceeEecCCCCcEEEEecCCCe
Q 018784          176 RSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN--TESASLEPKLGNIFIAGGEDMW  251 (350)
Q Consensus       176 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~sg~~d~~  251 (350)
                      .++..+..+.. ..+|..++|+.||.||+++ +|+.|++||+|+.+.++++..+..  ....+|.. .|.+|+.+++|=.
T Consensus       377 ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~g~~l~  455 (506)
T KOG0289|consen  377 KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTYLGIAGSDLQ  455 (506)
T ss_pred             CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCeEEeecceeE
Confidence            99988887775 4789999999999999876 566799999999999998888765  44555554 5889999988877


Q ss_pred             EEEEEc--ccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          252 VHVFDF--HTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       252 i~v~d~--~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                      |++++-  ...+++..+..|.+..+.+.|...-++++++|-|..++++.+
T Consensus       456 Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  456 VYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             EEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            777763  356778888889999999999999999999999999988743

>PTZ00421 coronin; Provisional

Probab=99.97  E-value=3.1e-28  Score=226.19  Aligned_cols=263  Identities=14%  Similarity=0.195  Sum_probs=190.7

Q ss_pred             cCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCce----------e---eeccCccCCeEEEEECC-CCcEEEEee
Q 018784           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW----------I---GTFEGHKGAVWSCCLDA-NALFSASGS   80 (350)
Q Consensus        15 H~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~----------~---~~l~gH~~~V~~v~~~~-~~~~l~s~s   80 (350)
                      |-..|....++   +|+..+++++.+.....|+...+..          .   ..+.||++.|++++|+| ++.+|+|||
T Consensus        19 ~~~~i~~~~~~---~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS   95 (493)
T PTZ00421         19 HFLNVTPSTAL---WDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTAS   95 (493)
T ss_pred             ceecccccccc---CCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEe
Confidence            33444444333   4766667777777666776433322          1   14789999999999999 889999999


Q ss_pred             CCCeEEEeeCCCCC-------eeeee-eccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEE
Q 018784           81 ADFTAKLWDALTGD-------EKHSF-EHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV  151 (350)
Q Consensus        81 ~Dg~v~vWd~~~~~-------~~~~~-~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~  151 (350)
                      .|++|++||+.++.       .+..+ .|...|.+++|+|++ ++|++++.|++|++||+.++.. ......|...|.++
T Consensus        96 ~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~-~~~l~~h~~~V~sl  174 (493)
T PTZ00421         96 EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA-VEVIKCHSDQITSL  174 (493)
T ss_pred             CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE-EEEEcCCCCceEEE
Confidence            99999999987542       23333 588999999999985 6899999999999999986543 33445678889999


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCC--eEEEEEecCCcEEE-EE----cCCcEEEEECCCcce-eee
Q 018784          152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP--VTSAEVSRDGRYIT-TA----DGSSVKFWDANHFGL-VKG  223 (350)
Q Consensus       152 ~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~-~~----~~~~i~vwd~~~~~~-~~~  223 (350)
                      +|++ ++.++++++.|++|++||+++++.+..+..+..  ...+.|.+++..++ ++    .++.|++||+++... +..
T Consensus       175 a~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~  253 (493)
T PTZ00421        175 EWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST  253 (493)
T ss_pred             EEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence            9986 567888999999999999999998888776532  34567888765554 33    368899999987543 322


Q ss_pred             eecCCC-CceeEecCCCCcEEEEec-CCCeEEEEEcccCeeEEeecC-CCcCEEEEEEcCCC
Q 018784          224 YNMPCN-TESASLEPKLGNIFIAGG-EDMWVHVFDFHTGEQIGCNKG-HHGPVHCVRFSPGG  282 (350)
Q Consensus       224 ~~~~~~-~~~~~~~~~~~~~l~sg~-~d~~i~v~d~~~~~~~~~~~~-h~~~v~~l~~sp~~  282 (350)
                      ...... .....+...++++|++|+ .|+.|++||+.++..+..... +..++..++|.|..
T Consensus       254 ~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        254 VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence            222221 222233344577777776 599999999999988766543 45678888888853

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.4e-29  Score=230.73  Aligned_cols=278  Identities=18%  Similarity=0.301  Sum_probs=222.2

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE   95 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~   95 (350)
                      +..|-+++|+|..|   .++++-..|.|++||..-+.++..|.+|.++|+.++|+|+..+++|||.|-.|+||+..+.++
T Consensus         9 SsRvKglsFHP~rP---wILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc   85 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRP---WILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC   85 (1202)
T ss_pred             cccccceecCCCCC---EEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee
Confidence            45788899999777   889999999999999999999999999999999999999999999999999999999999988


Q ss_pred             eeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 018784           96 KHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD  174 (350)
Q Consensus        96 ~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd  174 (350)
                      +.++ .|-..|+.+.||+.-.+++++|.|.+||||+..+..+..... +|.--|.|..|. +..-+++|++-|.+||+||
T Consensus        86 lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-GHnHYVMcAqFh-ptEDlIVSaSLDQTVRVWD  163 (1202)
T KOG0292|consen   86 LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQFH-PTEDLIVSASLDQTVRVWD  163 (1202)
T ss_pred             hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-cCceEEEeeccC-CccceEEEecccceEEEEe
Confidence            8876 799999999999999999999999999999998766655443 455566666665 5566889999999999999


Q ss_pred             CCCCc-----e------------------------eEeec-CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcc--ee
Q 018784          175 ARSGK-----I------------------------VQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFG--LV  221 (350)
Q Consensus       175 ~~~~~-----~------------------------~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~--~~  221 (350)
                      +..-+     +                        .+.+. +...|+.++|+|.--+++++ +|+.|++|.+...+  .+
T Consensus       164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEv  243 (1202)
T KOG0292|consen  164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV  243 (1202)
T ss_pred             ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceee
Confidence            74211     0                        01111 23468889999987777655 67899999886543  22


Q ss_pred             eeeecCCCC-ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          222 KGYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       222 ~~~~~~~~~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      .+...+.+. .++.|+| ..+++++.|+|++|++||+...+.+.++.--.+.-|.++-+|..+++|. +.|+-+.++.+.
T Consensus       244 DtcrgH~nnVssvlfhp-~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAA-gHDsGm~VFkle  321 (1202)
T KOG0292|consen  244 DTCRGHYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAA-GHDSGMIVFKLE  321 (1202)
T ss_pred             hhhhcccCCcceEEecC-ccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeee-ecCCceEEEEEc
Confidence            233333333 4455555 4689999999999999999999988888766778899999999987765 556666666654

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=4.9e-28  Score=226.12  Aligned_cols=243  Identities=16%  Similarity=0.289  Sum_probs=183.5

Q ss_pred             EEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCC-CcEEEEeeCCCeEEEeeCCCCCe--------eeee-eccccE
Q 018784           36 SASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALTGDE--------KHSF-EHKHIV  105 (350)
Q Consensus        36 sgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~vWd~~~~~~--------~~~~-~h~~~V  105 (350)
                      +|+.++.+++|+......+..+.+|.+.|.+++|+|+ +.+|||||.||+|+|||+.++..        ...+ .|...|
T Consensus        49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            3667889999998888888899999999999999996 78999999999999999875421        1222 588999


Q ss_pred             eEEEEcCCCCe-EEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEee
Q 018784          106 RACAFSEDTHL-LLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL  184 (350)
Q Consensus       106 ~~~~~~~~~~~-l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~  184 (350)
                      .+++|+|++.. |++++.|++|++||+.++......  .+...+.+++|++ ++.++++++.|++|++||+++++.+.++
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i--~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl  205 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI--NMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSF  205 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE--ecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence            99999998875 578999999999999876543222  2456799999986 4567777788999999999999988888


Q ss_pred             cCCCC-eEE-----EEEecCCcEEEE-EcC----CcEEEEECCC-cceeeeeecCCCCc--eeEecCCCCcEEEEecCCC
Q 018784          185 ETKSP-VTS-----AEVSRDGRYITT-ADG----SSVKFWDANH-FGLVKGYNMPCNTE--SASLEPKLGNIFIAGGEDM  250 (350)
Q Consensus       185 ~~~~~-v~~-----~~~~~~~~~l~~-~~~----~~i~vwd~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~l~sg~~d~  250 (350)
                      ..+.. +..     ..|++++.++++ +.+    +.|++||++. ..++..........  ...+.+..+.++++|+.|+
T Consensus       206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~  285 (568)
T PTZ00420        206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG  285 (568)
T ss_pred             ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence            76542 222     234477766554 544    3799999996 44555544433322  2334455688999999999


Q ss_pred             eEEEEEcccCeeEEeec--CCCcCEEEEEEcCCC
Q 018784          251 WVHVFDFHTGEQIGCNK--GHHGPVHCVRFSPGG  282 (350)
Q Consensus       251 ~i~v~d~~~~~~~~~~~--~h~~~v~~l~~sp~~  282 (350)
                      .|++|++..+.. ..+.  .+..++.+++|.|..
T Consensus       286 tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        286 NCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             eEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence            999999987643 2222  256788999999975

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=1.9e-28  Score=201.84  Aligned_cols=268  Identities=18%  Similarity=0.315  Sum_probs=201.9

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC-Cce-eeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCC
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDW-IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG   93 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~-~~~-~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~   93 (350)
                      ++.|.+++|||.  ...+++.||+|++||+|+++. |.. -+....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus        27 ~DsIS~l~FSP~--~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   27 EDSISALAFSPQ--ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             ccchheeEeccc--cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            789999999992  345778999999999999876 333 2466779999999999999999999999999999999999


Q ss_pred             CeeeeeeccccEeEEEEcCCCC--eEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEE
Q 018784           94 DEKHSFEHKHIVRACAFSEDTH--LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (350)
Q Consensus        94 ~~~~~~~h~~~V~~~~~~~~~~--~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~  171 (350)
                      +....-.|..+|+.|.|-+...  .|+|||+|.+||.||++........  .....++++...   ..+++.+..++.|.
T Consensus       105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~--~LPeRvYa~Dv~---~pm~vVata~r~i~  179 (347)
T KOG0647|consen  105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL--QLPERVYAADVL---YPMAVVATAERHIA  179 (347)
T ss_pred             CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee--eccceeeehhcc---CceeEEEecCCcEE
Confidence            8777778999999999976554  8999999999999999865443322  234567766543   34667777789999


Q ss_pred             EEECCCCce-eEeec--CCCCeEEEEEecCCc-EEEEEcCCcEEEEECCCcceeeeeecCCCC------------ceeEe
Q 018784          172 LWDARSGKI-VQTLE--TKSPVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGYNMPCNT------------ESASL  235 (350)
Q Consensus       172 iwd~~~~~~-~~~~~--~~~~v~~~~~~~~~~-~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~------------~~~~~  235 (350)
                      +++++++.. ...+.  ....+.++++.++.. ++.++-.|.+-+..+........+.+.|+.            ..+.|
T Consensus       180 vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~F  259 (347)
T KOG0647|consen  180 VYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAF  259 (347)
T ss_pred             EEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEe
Confidence            999976632 22222  234567777776554 444555677666655544333333333221            24556


Q ss_pred             cCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEE-ecCC
Q 018784          236 EPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYAS-GSED  291 (350)
Q Consensus       236 ~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~las-gs~D  291 (350)
                      .| ....|++.+.||++.+||-.....+.+...|..+|++.+|+.+|.++|- -|.|
T Consensus       260 hP-~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD  315 (347)
T KOG0647|consen  260 HP-VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD  315 (347)
T ss_pred             ec-ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence            66 4678999999999999999888888888899999999999999998874 3444

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=3e-28  Score=201.22  Aligned_cols=271  Identities=18%  Similarity=0.262  Sum_probs=206.3

Q ss_pred             ccccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCC
Q 018784            4 RKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF   83 (350)
Q Consensus         4 ~~~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg   83 (350)
                      +.+..|.     ++.|+.|.|+|   .+..|+.+|+||++++|++...+....+. |..++..++|.+ ...+++|+.||
T Consensus         6 ~~l~npP-----~d~IS~v~f~~---~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg   75 (323)
T KOG1036|consen    6 FELENPP-----EDGISSVKFSP---SSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDG   75 (323)
T ss_pred             cccCCCC-----hhceeeEEEcC---cCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCc
Confidence            4455555     78899999996   55567778899999999998876554444 899999999976 56678999999


Q ss_pred             eEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEE
Q 018784           84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (350)
Q Consensus        84 ~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s  163 (350)
                      .||++|+.++.......|...|+|+.+.+....+++||+|++|++||.........  ......|.++...   +..++.
T Consensus        76 ~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~--~d~~kkVy~~~v~---g~~LvV  150 (323)
T KOG1036|consen   76 QVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGT--FDQGKKVYCMDVS---GNRLVV  150 (323)
T ss_pred             eEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccc--cccCceEEEEecc---CCEEEE
Confidence            99999999998888889999999999999888999999999999999875322221  2234478777643   344556


Q ss_pred             EeCCCeEEEEECCCCceeEeec---CCCCeEEEEEecCCc-EEEEEcCCc--EEEEECCCcceeeeeecCCC--------
Q 018784          164 CTDSGGVRLWDARSGKIVQTLE---TKSPVTSAEVSRDGR-YITTADGSS--VKFWDANHFGLVKGYNMPCN--------  229 (350)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~-~l~~~~~~~--i~vwd~~~~~~~~~~~~~~~--------  229 (350)
                      |..|..+.+||+|+.....+..   ..-.+.++++.|++. +++++-+|.  +.++|.......+.|.+.|+        
T Consensus       151 g~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~  230 (323)
T KOG1036|consen  151 GTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTE  230 (323)
T ss_pred             eecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCce
Confidence            6677899999999876544332   345688899998655 445555665  45566653333334443332        


Q ss_pred             ----CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecC
Q 018784          230 ----TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSE  290 (350)
Q Consensus       230 ----~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~  290 (350)
                          ...+.|.|. ...|++|+.||.|.+||+.+.+.+..+......|.+++|+.+|..||.++.
T Consensus       231 ~~yPVNai~Fhp~-~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  231 IIYPVNAIAFHPI-HGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EEEEeceeEeccc-cceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence                224556654 678999999999999999999888888777888999999999999998875

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=5.6e-27  Score=186.00  Aligned_cols=280  Identities=20%  Similarity=0.289  Sum_probs=215.3

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCCCeeEee------CC------CCce---eeeccCccCCeEEEEECCCCcEEEE
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRN------GE------TGDW---IGTFEGHKGAVWSCCLDANALFSAS   78 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~------~~------~~~~---~~~l~gH~~~V~~v~~~~~~~~l~s   78 (350)
                      ..+..|.+|+|+|   .|.+.|.||+..+.||-.      +.      ...+   .+.-+.|.++|+|.+|+|+|+++||
T Consensus        30 ~dsqairav~fhp---~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat  106 (350)
T KOG0641|consen   30 EDSQAIRAVAFHP---AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT  106 (350)
T ss_pred             cchhheeeEEecC---CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence            4567899999997   899999999999998833      11      1111   1233568999999999999999999


Q ss_pred             eeCCCeEEEeeCCCCC------eeeeeeccccEeEEEEcC----CCCeEEEeeC-CCeEEEEECCCCCCCCeeecCCCCc
Q 018784           79 GSADFTAKLWDALTGD------EKHSFEHKHIVRACAFSE----DTHLLLTGGF-EKILRIFDLNRPDAPPREVGNSSGS  147 (350)
Q Consensus        79 ~s~Dg~v~vWd~~~~~------~~~~~~h~~~V~~~~~~~----~~~~l~sg~~-d~~v~vwd~~~~~~~~~~~~~~~~~  147 (350)
                      ||.|.+|++.-.+...      ....--|.+.|+.++|-.    .+.+|++++. |-.|.+=|..+++ .......|.+.
T Consensus       107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~-~~~a~sghtgh  185 (350)
T KOG0641|consen  107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ-GFHALSGHTGH  185 (350)
T ss_pred             cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC-cceeecCCccc
Confidence            9999999998653222      222224899999999953    3467777654 5556666665544 34455778888


Q ss_pred             EEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC--------CCCeEEEEEecCCcEEEEEc-CCcEEEEECCCc
Q 018784          148 IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET--------KSPVTSAEVSRDGRYITTAD-GSSVKFWDANHF  218 (350)
Q Consensus       148 v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~  218 (350)
                      |.++-  .-.+.++++|+.|.+|++||+|-..++.++..        .+.+.++++.|.|++|+++. |..+.+||+|.+
T Consensus       186 ilaly--swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~  263 (350)
T KOG0641|consen  186 ILALY--SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG  263 (350)
T ss_pred             EEEEE--EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC
Confidence            87762  23578999999999999999999988888763        25688999999999999885 778999999999


Q ss_pred             ceeeeeecCCCC-ceeEecCCCCcEEEEecCCCeEEEEEcccC---e-eEEeecCCCcCEEEEEEcCCCCEEEEecCCCc
Q 018784          219 GLVKGYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTG---E-QIGCNKGHHGPVHCVRFSPGGESYASGSEDGT  293 (350)
Q Consensus       219 ~~~~~~~~~~~~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~---~-~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~  293 (350)
                      +.++.+.-+... .++.|.| ...|+++|+.|.+|++-|+..-   + .+...-.|...+-.+.|+|..-.+++.|.|.+
T Consensus       264 r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt  342 (350)
T KOG0641|consen  264 RMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKT  342 (350)
T ss_pred             ceeeeeCCCccceeEEEeCC-CceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcce
Confidence            999888765544 3444554 5789999999999999998531   1 23344579999999999999888999999999


Q ss_pred             EEEecCC
Q 018784          294 IRIWQTN  300 (350)
Q Consensus       294 v~vw~~~  300 (350)
                      +.+|.++
T Consensus       343 ~tlwa~~  349 (350)
T KOG0641|consen  343 ATLWALN  349 (350)
T ss_pred             EEEeccC
Confidence            9999764

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.1e-28  Score=220.56  Aligned_cols=249  Identities=22%  Similarity=0.314  Sum_probs=210.3

Q ss_pred             eeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeec-cccEeEEEEcCCCCeEEEeeCCCeEEEEECCC
Q 018784           55 GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH-KHIVRACAFSEDTHLLLTGGFEKILRIFDLNR  133 (350)
Q Consensus        55 ~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h-~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~  133 (350)
                      +.+..|+..|.++.++|....+.++=-.|.|.|||.++...+..+.. .-+|+++.|-+..+++++|+.|..||||+..+
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt   86 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT   86 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence            45666999999999999999999999999999999999888888764 45799999999999999999999999999987


Q ss_pred             CCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC-ceeEeecCC-CCeEEEEEecCC--cEEEEEcCCc
Q 018784          134 PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETK-SPVTSAEVSRDG--RYITTADGSS  209 (350)
Q Consensus       134 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~v~~~~~~~~~--~~l~~~~~~~  209 (350)
                      .+.. .....|..-+++++.. |...+++++++|-+|++||-+.+ .+.+++.+| ..|.+++|+|..  .+..++-|++
T Consensus        87 ~ekV-~~FeAH~DyIR~iavH-Pt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT  164 (794)
T KOG0276|consen   87 GEKV-KTFEAHSDYIRSIAVH-PTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT  164 (794)
T ss_pred             ceee-EEeeccccceeeeeec-CCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence            6654 4557788999999864 56677889999999999998765 666777765 579999999853  4555667999


Q ss_pred             EEEEECCCcceeeeeecCCCC-ceeEecCC-CCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEE
Q 018784          210 VKFWDANHFGLVKGYNMPCNT-ESASLEPK-LGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYAS  287 (350)
Q Consensus       210 i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~las  287 (350)
                      |++|.+.+..+..++..+... .++.+.+. +..+|++|+.|.+|++||..+..++.++.||...|..+.|+|.-++++|
T Consensus       165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiis  244 (794)
T KOG0276|consen  165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIIS  244 (794)
T ss_pred             EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEE
Confidence            999999988887777765443 34444432 3469999999999999999999999999999999999999999999999


Q ss_pred             ecCCCcEEEecCCCCCcc
Q 018784          288 GSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       288 gs~Dg~v~vw~~~~~~~~  305 (350)
                      ||+||+||||+..+.+++
T Consensus       245 gsEDGTvriWhs~Ty~lE  262 (794)
T KOG0276|consen  245 GSEDGTVRIWNSKTYKLE  262 (794)
T ss_pred             ecCCccEEEecCcceehh
Confidence            999999999987665544

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=4.2e-28  Score=209.84  Aligned_cols=283  Identities=17%  Similarity=0.254  Sum_probs=224.0

Q ss_pred             eEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCcee----ee------------c--cCccCCeEEEEECC
Q 018784           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI----GT------------F--EGHKGAVWSCCLDA   71 (350)
Q Consensus        10 ~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~----~~------------l--~gH~~~V~~v~~~~   71 (350)
                      .+...|.-++.+|+++|   |.+++.+++.|++|.=|+..+++..    ..            .  ++|...|.++++++
T Consensus       136 ~~~~~H~~s~~~vals~---d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~  212 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSP---DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS  212 (479)
T ss_pred             eeeccccCcceEEEeec---cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC
Confidence            34568999999999886   9999999999999999998877632    01            1  37889999999999


Q ss_pred             CCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEE
Q 018784           72 NALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRT  150 (350)
Q Consensus        72 ~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~  150 (350)
                      |+++||||+.|..|.||+..+.+.+..+ .|.+.|.+++|-.....|++++.|++|++|+++..... ..+-.|...|..
T Consensus       213 Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v-etlyGHqd~v~~  291 (479)
T KOG0299|consen  213 DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV-ETLYGHQDGVLG  291 (479)
T ss_pred             CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH-HHHhCCccceee
Confidence            9999999999999999999999988875 69999999999988889999999999999999754433 333456677888


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCC
Q 018784          151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNT  230 (350)
Q Consensus       151 ~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~  230 (350)
                      +..+. -++++..|+.|+++++|++.....+....+...+.+++|-.+..+++++++|.|.+|++-+.+++.....+...
T Consensus       292 IdaL~-reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv  370 (479)
T KOG0299|consen  292 IDALS-RERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV  370 (479)
T ss_pred             echhc-ccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccc
Confidence            87663 56678888899999999996555554455566899999999999999999999999999888877665443211


Q ss_pred             -------------ceeEecCCCCcEEEEecCCCeEEEEEcccC-e---eEEeecCCCcCEEEEEEcCCCCE-EEEecCCC
Q 018784          231 -------------ESASLEPKLGNIFIAGGEDMWVHVFDFHTG-E---QIGCNKGHHGPVHCVRFSPGGES-YASGSEDG  292 (350)
Q Consensus       231 -------------~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~-~---~~~~~~~h~~~v~~l~~sp~~~~-lasgs~Dg  292 (350)
                                   ..+... ...+++++|+.+|.|++|.+.++ +   ++..+. -.+.|++++|+++|+. +|..+...
T Consensus       371 ~~~~~~~~~~~Witsla~i-~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEh  448 (479)
T KOG0299|consen  371 IPELDPVNGNFWITSLAVI-PGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEH  448 (479)
T ss_pred             cCCccccccccceeeeEec-ccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccccc
Confidence                         112222 34689999999999999999887 2   233333 5678999999999995 45556666


Q ss_pred             cEEEecC
Q 018784          293 TIRIWQT  299 (350)
Q Consensus       293 ~v~vw~~  299 (350)
                      .+-=|-.
T Consensus       449 RlGRW~~  455 (479)
T KOG0299|consen  449 RLGRWWC  455 (479)
T ss_pred             ccceeeE
Confidence            6666643

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4e-28  Score=200.95  Aligned_cols=240  Identities=16%  Similarity=0.217  Sum_probs=196.1

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCc--EEEEeeCCCeEEEee
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL--FSASGSADFTAKLWD   89 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~--~l~s~s~Dg~v~vWd   89 (350)
                      +..|.+++++++++     |.++||||+|.+|+|||..+...+..+-.|++.|+++.|.+.-.  .|.+|+.||.|.+|+
T Consensus        39 ~~aH~~sitavAVs-----~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~  113 (362)
T KOG0294|consen   39 FSAHAGSITALAVS-----GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR  113 (362)
T ss_pred             ccccccceeEEEec-----ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence            36899999999985     67999999999999999999999999999999999999987654  789999999999999


Q ss_pred             CCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784           90 ALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (350)
Q Consensus        90 ~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg  168 (350)
                      ...-....++ .|++.|+.++.||.+++.++.+.|+.+++||+-++......-  -......+.|++.+.++++++.  .
T Consensus       114 ~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~--L~~~at~v~w~~~Gd~F~v~~~--~  189 (362)
T KOG0294|consen  114 VGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN--LKNKATLVSWSPQGDHFVVSGR--N  189 (362)
T ss_pred             cCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec--cCCcceeeEEcCCCCEEEEEec--c
Confidence            9887777776 589999999999999999999999999999997654433222  2233445889977776766543  4


Q ss_pred             eEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCce--eEecCCCCcEEEEe
Q 018784          169 GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTES--ASLEPKLGNIFIAG  246 (350)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~sg  246 (350)
                      .|-+|.+.+...+..+..+..+.++.|...+.+++++++..|++||.....+...+..+.+...  ..+..+.+.+|++.
T Consensus       190 ~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTa  269 (362)
T KOG0294|consen  190 KIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTA  269 (362)
T ss_pred             EEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEe
Confidence            8999999998888888777778888888888888899999999999987666555555444332  22344457899999


Q ss_pred             cCCCeEEEEEcccC
Q 018784          247 GEDMWVHVFDFHTG  260 (350)
Q Consensus       247 ~~d~~i~v~d~~~~  260 (350)
                      ++||.|++||++..
T Consensus       270 SSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  270 SSDGFIKVWDIDME  283 (362)
T ss_pred             ccCceEEEEEcccc
Confidence            99999999998765

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.5e-28  Score=209.96  Aligned_cols=278  Identities=21%  Similarity=0.310  Sum_probs=212.9

Q ss_pred             eeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe---eeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEE
Q 018784           54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE---KHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIF  129 (350)
Q Consensus        54 ~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~---~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vw  129 (350)
                      ...|..|++.|+.+.|+++|++|||++.|.+..+|++.....   ..++ .|..+|..+.|+||.++|++++.|..+++|
T Consensus       217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw  296 (519)
T KOG0293|consen  217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW  296 (519)
T ss_pred             hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence            357889999999999999999999999999999998754433   3333 588999999999999999999999999999


Q ss_pred             ECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC--CCCeEEEEEecCCcEEEE-Ec
Q 018784          130 DLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET--KSPVTSAEVSRDGRYITT-AD  206 (350)
Q Consensus       130 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~-~~  206 (350)
                      |+.++.........+...+.+++|.|++ ..+++|+.|++|..||+.. ......+.  ...+..+++++||+++.. ..
T Consensus       297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~  374 (519)
T KOG0293|consen  297 DVDTGDLRHLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTV  374 (519)
T ss_pred             cCCcchhhhhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCcEEEEEec
Confidence            9998887666655567889999999754 4577889999999999863 33333332  246889999999988754 56


Q ss_pred             CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcC--EEEEEEcC-CCC
Q 018784          207 GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGP--VHCVRFSP-GGE  283 (350)
Q Consensus       207 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~--v~~l~~sp-~~~  283 (350)
                      |..|++++..+...+.....+....+.+++ .+++++++.=.+..|++||+.+...+..+.||...  |-.-+|-- +..
T Consensus       375 d~~i~l~~~e~~~dr~lise~~~its~~iS-~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~  453 (519)
T KOG0293|consen  375 DKKIRLYNREARVDRGLISEEQPITSFSIS-KDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDK  453 (519)
T ss_pred             ccceeeechhhhhhhccccccCceeEEEEc-CCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcc
Confidence            889999998765544333333334444444 36899999999999999999988888899999764  44445653 447


Q ss_pred             EEEEecCCCcEEEecCCCCCcccCCCCCC--------Cccccc-cccccccceeeeeeEE
Q 018784          284 SYASGSEDGTIRIWQTNPPNHEENHSGTG--------NAQTGK-LKASTDEVTRKIEGFH  334 (350)
Q Consensus       284 ~lasgs~Dg~v~vw~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~i~~~~  334 (350)
                      ++||||+|+.|+||+....+.....+||.        +++... +....|+-+-+|.|+.
T Consensus       454 fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~  513 (519)
T KOG0293|consen  454 FIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS  513 (519)
T ss_pred             eEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence            99999999999999998888877776664        222222 2233355566666543

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.3e-28  Score=196.82  Aligned_cols=241  Identities=24%  Similarity=0.377  Sum_probs=184.8

Q ss_pred             eeEEEecccCCCccEEEEEe-----CCCCeeEeeCCCCceeeeccC--ccCCeEEEEECCCC-cEEEEeeCCCeEEEeeC
Q 018784           19 VVDLFYSPITPDGFFLVSAS-----KDSSPMLRNGETGDWIGTFEG--HKGAVWSCCLDANA-LFSASGSADFTAKLWDA   90 (350)
Q Consensus        19 v~~~~~~~~s~dg~~lasgs-----~d~~v~iw~~~~~~~~~~l~g--H~~~V~~v~~~~~~-~~l~s~s~Dg~v~vWd~   90 (350)
                      =+++.|||+.++--.+|++.     ..|++.|-+....+-+..+..  -.+.+..|+|++.. ..+++++.||++|+||.
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~   90 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL   90 (311)
T ss_pred             cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence            36789999887533334443     367888888764444443332  34778899998764 57789999999999996


Q ss_pred             CCCC-eeeee-eccccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC
Q 018784           91 LTGD-EKHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (350)
Q Consensus        91 ~~~~-~~~~~-~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d  167 (350)
                      .... +++.+ +|+..|.++.|++ .+..++++++|++||+|+...+..... ...|...|+..+|+|..+.++++++.|
T Consensus        91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~T-f~gh~~~Iy~a~~sp~~~nlfas~Sgd  169 (311)
T KOG0277|consen   91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQT-FNGHNSCIYQAAFSPHIPNLFASASGD  169 (311)
T ss_pred             CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEe-ecCCccEEEEEecCCCCCCeEEEccCC
Confidence            4432 44444 6999999999998 567788899999999999987665443 566888999999999999999999999


Q ss_pred             CeEEEEECCC-CceeEeecC-CCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEE
Q 018784          168 GGVRLWDARS-GKIVQTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA  245 (350)
Q Consensus       168 g~i~iwd~~~-~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  245 (350)
                      +++++||++. |+.+. +.. ..++.++.|+.                                        .+.+++++
T Consensus       170 ~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~k----------------------------------------y~~~vl~T  208 (311)
T KOG0277|consen  170 GTLRLWDVRSPGKFMS-IEAHNSEILCCDWSK----------------------------------------YNHNVLAT  208 (311)
T ss_pred             ceEEEEEecCCCceeE-EEeccceeEeecccc----------------------------------------cCCcEEEe
Confidence            9999999985 44444 443 33666655553                                        23567788


Q ss_pred             ecCCCeEEEEEcccC-eeEEeecCCCcCEEEEEEcCCC-CEEEEecCCCcEEEecCCC
Q 018784          246 GGEDMWVHVFDFHTG-EQIGCNKGHHGPVHCVRFSPGG-ESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       246 g~~d~~i~v~d~~~~-~~~~~~~~h~~~v~~l~~sp~~-~~lasgs~Dg~v~vw~~~~  301 (350)
                      |+.|+.|+.||++.- .++..+.+|.-.|..++|||.- .+|||+|.|-+++|||...
T Consensus       209 g~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~  266 (311)
T KOG0277|consen  209 GGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPER  266 (311)
T ss_pred             cCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEeccccc
Confidence            888888888888764 4567788999999999999974 6789999999999999753

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=7.9e-28  Score=227.56  Aligned_cols=282  Identities=17%  Similarity=0.270  Sum_probs=222.3

Q ss_pred             cCCceeEEEecccCCCccEEEEEe--CCCCeeEeeCCC------------CceeeeccCccCCeEEEEECCCCcEEEEee
Q 018784           15 HSRPVVDLFYSPITPDGFFLVSAS--KDSSPMLRNGET------------GDWIGTFEGHKGAVWSCCLDANALFSASGS   80 (350)
Q Consensus        15 H~~~v~~~~~~~~s~dg~~lasgs--~d~~v~iw~~~~------------~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s   80 (350)
                      |+..|..+..+|   ||..+|||+  .|+.++||+.+.            .+.+.++..|.+.|.|+.|++||++||+||
T Consensus        12 ~~~~IfSIdv~p---dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS   88 (942)
T KOG0973|consen   12 NEKSIFSIDVHP---DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS   88 (942)
T ss_pred             CCeeEEEEEecC---CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence            345788887775   999999999  899999999542            234567788999999999999999999999


Q ss_pred             CCCeEEEeeCCC----------CC--------eeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee
Q 018784           81 ADFTAKLWDALT----------GD--------EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV  141 (350)
Q Consensus        81 ~Dg~v~vWd~~~----------~~--------~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~  141 (350)
                      .|+.|.||+...          +.        +...+ .|.+.|..++|+|++.+|++++.|++|.+|+..+. ...+.+
T Consensus        89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl  167 (942)
T KOG0973|consen   89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVL  167 (942)
T ss_pred             CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeee
Confidence            999999998762          10        11222 59999999999999999999999999999999887 455666


Q ss_pred             cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-------CCCeEEEEEecCCcEEEEEc---C--Cc
Q 018784          142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-------KSPVTSAEVSRDGRYITTAD---G--SS  209 (350)
Q Consensus       142 ~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~---~--~~  209 (350)
                      ..|.+.|..+.|.| -++++++-++|++|++|++.+....+.+..       ..-+..+.|+|||++|++..   +  ..
T Consensus       168 ~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~  246 (942)
T KOG0973|consen  168 RGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKST  246 (942)
T ss_pred             ecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcce
Confidence            78889999999975 566888999999999999877666555543       24578899999999998753   2  36


Q ss_pred             EEEEECCCcceeeeeecCCCC-ceeEecCC----C--------C----cEEEEecCCCeEEEEEcccCeeEEeec-CCCc
Q 018784          210 VKFWDANHFGLVKGYNMPCNT-ESASLEPK----L--------G----NIFIAGGEDMWVHVFDFHTGEQIGCNK-GHHG  271 (350)
Q Consensus       210 i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~----~--------~----~~l~sg~~d~~i~v~d~~~~~~~~~~~-~h~~  271 (350)
                      +.|.+-.+++.-..+-.+... ..+.|+|.    .        .    .++++|+.|+.|-||.....+++.... -...
T Consensus       247 ~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~  326 (942)
T KOG0973|consen  247 IAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNK  326 (942)
T ss_pred             eEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcC
Confidence            888887776655555554443 33344431    0        1    278999999999999987777765443 2345


Q ss_pred             CEEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784          272 PVHCVRFSPGGESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       272 ~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~  301 (350)
                      +|..|+|+|||-.|+.+|.||+|.+.....
T Consensus       327 SI~DmsWspdG~~LfacS~DGtV~~i~Fee  356 (942)
T KOG0973|consen  327 SIVDMSWSPDGFSLFACSLDGTVALIHFEE  356 (942)
T ss_pred             ceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence            799999999999999999999999998753

>PTZ00420 coronin; Provisional

Probab=99.96  E-value=1.2e-26  Score=216.92  Aligned_cols=225  Identities=14%  Similarity=0.218  Sum_probs=174.6

Q ss_pred             EeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCC-CCeEEEeeCCCeEEEEECCCCCC-------CCeeecCCCCcE
Q 018784           78 SGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDA-------PPREVGNSSGSI  148 (350)
Q Consensus        78 s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~-~~~l~sg~~d~~v~vwd~~~~~~-------~~~~~~~~~~~v  148 (350)
                      +||.++.|++|+.........+ .|...|.+++|+|+ +.+|++|+.|++|++||+.....       +......|...|
T Consensus        49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V  128 (568)
T PTZ00420         49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI  128 (568)
T ss_pred             CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence            4778999999998776655555 58999999999996 78999999999999999975321       122346688899


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecC
Q 018784          149 RTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMP  227 (350)
Q Consensus       149 ~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~  227 (350)
                      .+++|.|....++++++.|++|++||+++++.+..+.++..+.+++|+|+|.+|+++ .|+.|++||+++...+..+..+
T Consensus       129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH  208 (568)
T PTZ00420        129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH  208 (568)
T ss_pred             EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence            999999877778889999999999999999888877777889999999999998866 5889999999998887776655


Q ss_pred             CCCc-eeEec----CCCCcEEEEecCC----CeEEEEEccc-CeeEEeec--CCCcCEEEEEEcCCCCEEEEecCCCcEE
Q 018784          228 CNTE-SASLE----PKLGNIFIAGGED----MWVHVFDFHT-GEQIGCNK--GHHGPVHCVRFSPGGESYASGSEDGTIR  295 (350)
Q Consensus       228 ~~~~-~~~~~----~~~~~~l~sg~~d----~~i~v~d~~~-~~~~~~~~--~h~~~v~~l~~sp~~~~lasgs~Dg~v~  295 (350)
                      .... ...+.    ..++.++++++.|    +.|+|||+++ +..+....  .+.+.+......+++.++++|+.|+.|+
T Consensus       209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr  288 (568)
T PTZ00420        209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR  288 (568)
T ss_pred             cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence            4321 11111    1346777777665    3799999985 45554433  3444455555566789999999999999


Q ss_pred             EecCCCC
Q 018784          296 IWQTNPP  302 (350)
Q Consensus       296 vw~~~~~  302 (350)
                      +|++...
T Consensus       289 ~~e~~~~  295 (568)
T PTZ00420        289 YYQHSLG  295 (568)
T ss_pred             EEEccCC
Confidence            9998654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=2.7e-28  Score=206.42  Aligned_cols=202  Identities=25%  Similarity=0.353  Sum_probs=177.2

Q ss_pred             eEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCC-------------------------CCceeeeccCccCCe
Q 018784           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE-------------------------TGDWIGTFEGHKGAV   64 (350)
Q Consensus        10 ~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~-------------------------~~~~~~~l~gH~~~V   64 (350)
                      .+|+||+.+|-+|...+   +|..+++||.|.+++||+.+                         +..++.+|+||+++|
T Consensus       187 ~~~~GHk~~V~sVsv~~---sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~V  263 (423)
T KOG0313|consen  187 KVCRGHKRSVDSVSVDS---SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPV  263 (423)
T ss_pred             hHhcccccceeEEEecC---CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccce
Confidence            45789999999998775   99999999999999999922                         234567899999999


Q ss_pred             EEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCC--CCeeec
Q 018784           65 WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA--PPREVG  142 (350)
Q Consensus        65 ~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~--~~~~~~  142 (350)
                      .+|.|++ ...+.|+|.|.+||.||++++..+.++.-+....+++++|..++|++|+.|..+++||.+.+..  +...+.
T Consensus       264 s~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~  342 (423)
T KOG0313|consen  264 SSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLI  342 (423)
T ss_pred             eeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeee
Confidence            9999987 7778999999999999999999999988888999999999999999999999999999976543  334567


Q ss_pred             CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCc-eeEeecC-CCCeEEEEEecCCcEEEEEcCCcEEEEEC
Q 018784          143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK-IVQTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDA  215 (350)
Q Consensus       143 ~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~i~vwd~  215 (350)
                      .|.+.|.++.|+|.+..++++++.|+++++||+|+.+ ++..+.. ...+.++.|+..+.++.++.|.+|+++..
T Consensus       343 gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  343 GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEecc
Confidence            8899999999999999999999999999999999987 7888775 46799999998777777788999999864

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=3e-27  Score=194.69  Aligned_cols=245  Identities=18%  Similarity=0.288  Sum_probs=191.2

Q ss_pred             ccCCeEEEEECC-CCcEEEEeeCCCeEEEeeCCCC-C--eeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCC
Q 018784           60 HKGAVWSCCLDA-NALFSASGSADFTAKLWDALTG-D--EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD  135 (350)
Q Consensus        60 H~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~~-~--~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~  135 (350)
                      ..+.|.+++|+| ...+++.+|.|++||+|++... .  .+....|.++|.+++|+.+|..+++|+-|+.+++||+.+++
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q  105 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ  105 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence            457899999999 5667779999999999998753 3  33345799999999999999999999999999999998763


Q ss_pred             CCCeeecCCCCcEEEEEEeCCCC-cEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEE
Q 018784          136 APPREVGNSSGSIRTVAWLHSDQ-TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWD  214 (350)
Q Consensus       136 ~~~~~~~~~~~~v~~~~~~~~~~-~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd  214 (350)
                        ....+.|.+.|.++.|.+... .++++|+.|++|++||+|+..++.+++.+..+.++.+-.. -.+++..++.|.+|+
T Consensus       106 --~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~p-m~vVata~r~i~vyn  182 (347)
T KOG0647|consen  106 --VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYP-MAVVATAERHIAVYN  182 (347)
T ss_pred             --eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCc-eeEEEecCCcEEEEE
Confidence              456788999999999996543 5889999999999999999999999999888877655432 233444678999999


Q ss_pred             CCCcc-eeeeeecCCC--CceeEecCCCCcEEEEecCCCeEEEEEcccC--eeEEeecCCCc---------CEEEEEEcC
Q 018784          215 ANHFG-LVKGYNMPCN--TESASLEPKLGNIFIAGGEDMWVHVFDFHTG--EQIGCNKGHHG---------PVHCVRFSP  280 (350)
Q Consensus       215 ~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~--~~~~~~~~h~~---------~v~~l~~sp  280 (350)
                      ++... ..+....+..  ..++.... +...++.|+.+|.+.+..+..+  ..-.+++.|..         +|++++|+|
T Consensus       183 L~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP  261 (347)
T KOG0647|consen  183 LENPPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP  261 (347)
T ss_pred             cCCCcchhhhhcCcccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec
Confidence            96643 3333333322  33444443 3455699999999999988876  44455666652         478899999


Q ss_pred             CCCEEEEecCCCcEEEecCCCCCcccCC
Q 018784          281 GGESYASGSEDGTIRIWQTNPPNHEENH  308 (350)
Q Consensus       281 ~~~~lasgs~Dg~v~vw~~~~~~~~~~~  308 (350)
                      .-..|+|.+.||+..+||.+....+...
T Consensus       262 ~hgtlvTaGsDGtf~FWDkdar~kLk~s  289 (347)
T KOG0647|consen  262 VHGTLVTAGSDGTFSFWDKDARTKLKTS  289 (347)
T ss_pred             ccceEEEecCCceEEEecchhhhhhhcc
Confidence            9889999999999999998766655443

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.96  E-value=8.8e-26  Score=199.83  Aligned_cols=267  Identities=16%  Similarity=0.146  Sum_probs=196.6

Q ss_pred             cEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEE-EEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEE
Q 018784           32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAF  110 (350)
Q Consensus        32 ~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l-~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~  110 (350)
                      ++++|++.|+.+++||..+++.+..+.+|.. +..++|++++..+ ++++.|+.|++||..+++....+.....+..++|
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~   80 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFAL   80 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEE
Confidence            4789999999999999999999988887654 6789999999865 6778899999999988877665544444678899


Q ss_pred             cCCCCeEEE-eeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC-CeEEEEECCCCceeEeecCCC
Q 018784          111 SEDTHLLLT-GGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-GGVRLWDARSGKIVQTLETKS  188 (350)
Q Consensus       111 ~~~~~~l~s-g~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-g~i~iwd~~~~~~~~~~~~~~  188 (350)
                      +|+++.+++ ++.|+.+++||+.+....... . ....+..++|++.+. +++++..+ ..+.+||.++++....+....
T Consensus        81 ~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~-~-~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~  157 (300)
T TIGR03866        81 HPNGKILYIANEDDNLVTVIDIETRKVLAEI-P-VGVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTYEIVDNVLVDQ  157 (300)
T ss_pred             CCCCCEEEEEcCCCCeEEEEECCCCeEEeEe-e-CCCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCCeEEEEEEcCC
Confidence            999987755 456899999999764322211 1 223456788876544 55555554 457788999887766655555


Q ss_pred             CeEEEEEecCCcEEE-EE-cCCcEEEEECCCcceeeeeecCC--------CCceeEecCCCCcE-EEEecCCCeEEEEEc
Q 018784          189 PVTSAEVSRDGRYIT-TA-DGSSVKFWDANHFGLVKGYNMPC--------NTESASLEPKLGNI-FIAGGEDMWVHVFDF  257 (350)
Q Consensus       189 ~v~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-l~sg~~d~~i~v~d~  257 (350)
                      ....+.|+|++++++ ++ .++.|++||+++.+.+..+....        ....+.+.+. +++ +++.+.++.|.+||+
T Consensus       158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d-g~~~~~~~~~~~~i~v~d~  236 (300)
T TIGR03866       158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD-GKTAFVALGPANRVAVVDA  236 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC-CCEEEEEcCCCCeEEEEEC
Confidence            567789999998774 43 37899999999887766554321        1123445554 444 555566778999999


Q ss_pred             ccCeeEEeecCCCcCEEEEEEcCCCCEEEEe-cCCCcEEEecCCCCCc
Q 018784          258 HTGEQIGCNKGHHGPVHCVRFSPGGESYASG-SEDGTIRIWQTNPPNH  304 (350)
Q Consensus       258 ~~~~~~~~~~~h~~~v~~l~~sp~~~~lasg-s~Dg~v~vw~~~~~~~  304 (350)
                      .+++.+..+. +...+++++|+|++++|+++ +.++.|++||+...+.
T Consensus       237 ~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       237 KTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV  283 (300)
T ss_pred             CCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence            9888765543 34578999999999998876 5699999999876554

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=8e-28  Score=215.97  Aligned_cols=294  Identities=22%  Similarity=0.312  Sum_probs=225.9

Q ss_pred             ccccceeEee-----ccCCcee---EEEecccCCCccEEEEEeCCCCeeEeeCC--CCc----eeeeccCccCCeEEEEE
Q 018784            4 RKVAVPLVCH-----GHSRPVV---DLFYSPITPDGFFLVSASKDSSPMLRNGE--TGD----WIGTFEGHKGAVWSCCL   69 (350)
Q Consensus         4 ~~~~~~~~~~-----gH~~~v~---~~~~~~~s~dg~~lasgs~d~~v~iw~~~--~~~----~~~~l~gH~~~V~~v~~   69 (350)
                      .++.+.+|++     -|-..|.   .+..++  |.+++|.||+.||.|++|+..  .++    .+..++.|++-|.-+..
T Consensus         4 kk~kvsyVi~D~~e~qn~~~v~~~~~Lq~da--~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL   81 (735)
T KOG0308|consen    4 KKKKVSYVIRDENEKQNRNGVNITKALQLDA--PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIIL   81 (735)
T ss_pred             ceeEEEEEccchhhhhccccccchhhccccC--CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHh
Confidence            3456666653     2444454   444444  678899999999999999963  222    46789999999999999


Q ss_pred             CCCCcEEEEeeCCCeEEEeeCCCCC--eeeee-eccccEeEEEE-cCCCCeEEEeeCCCeEEEEECCCCCC---------
Q 018784           70 DANALFSASGSADFTAKLWDALTGD--EKHSF-EHKHIVRACAF-SEDTHLLLTGGFEKILRIFDLNRPDA---------  136 (350)
Q Consensus        70 ~~~~~~l~s~s~Dg~v~vWd~~~~~--~~~~~-~h~~~V~~~~~-~~~~~~l~sg~~d~~v~vwd~~~~~~---------  136 (350)
                      ..+++.|+|+|.|.+|++|+...+.  +..++ .|+..|.|+++ .++..++|+||-|+.|.+||++.+..         
T Consensus        82 ~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~  161 (735)
T KOG0308|consen   82 CGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV  161 (735)
T ss_pred             hcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc
Confidence            8999999999999999999987663  44444 59999999999 88999999999999999999986522         


Q ss_pred             C-CeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEE-EEEcCCcEEEE
Q 018784          137 P-PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYI-TTADGSSVKFW  213 (350)
Q Consensus       137 ~-~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l-~~~~~~~i~vw  213 (350)
                      . .....++...+++++.. +.+.++++|+-.+.|++||.++++.+..+.++ ..|..+..++||..+ .+++|++|++|
T Consensus       162 t~~sl~sG~k~siYSLA~N-~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlW  240 (735)
T KOG0308|consen  162 TVNSLGSGPKDSIYSLAMN-QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLW  240 (735)
T ss_pred             ccccCCCCCccceeeeecC-CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEee
Confidence            0 11222567788998865 44578999999999999999999888888765 568999999999655 56689999999


Q ss_pred             ECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCc
Q 018784          214 DANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGT  293 (350)
Q Consensus       214 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~  293 (350)
                      |++..+++.++..+..........+.-.++.+|+.|+.|..=|+++......+-....+|..+..+...+-+-.+..|+.
T Consensus       241 dLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~  320 (735)
T KOG0308|consen  241 DLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSS  320 (735)
T ss_pred             eccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeecccc
Confidence            99999999998877655433333344578999999999999999885433223234456777777755555577888999


Q ss_pred             EEEecCC
Q 018784          294 IRIWQTN  300 (350)
Q Consensus       294 v~vw~~~  300 (350)
                      |+-|...
T Consensus       321 I~rW~~~  327 (735)
T KOG0308|consen  321 IKRWKLE  327 (735)
T ss_pred             ceecCCc
Confidence            9999764

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.9e-27  Score=205.32  Aligned_cols=234  Identities=19%  Similarity=0.310  Sum_probs=193.7

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCC-CcEEEEeeCCCeEEEeeCCCCC
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALTGD   94 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~vWd~~~~~   94 (350)
                      .+.|+++.|..   ||++||.|...|.|+|+|..+...++.|.+|+.+|..+.|+|+ ++.+++|+.|+.+++||+.+..
T Consensus        68 k~~v~s~~fR~---DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~  144 (487)
T KOG0310|consen   68 KDVVYSVDFRS---DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY  144 (487)
T ss_pred             ccceeEEEeec---CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE
Confidence            56788998886   9999999999999999997776678899999999999999986 4678899999999999998887


Q ss_pred             eeeee-eccccEeEEEEcCC-CCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEE
Q 018784           95 EKHSF-EHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (350)
Q Consensus        95 ~~~~~-~h~~~V~~~~~~~~-~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i  172 (350)
                      .+..+ .|+..|+|.+|+|. +.+++|||.||+||+||+.... .....-.|..+|..+.+.|++. ++++|+. ..|++
T Consensus       145 v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs-~iasAgG-n~vkV  221 (487)
T KOG0310|consen  145 VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGS-LIASAGG-NSVKV  221 (487)
T ss_pred             EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCC-EEEEcCC-CeEEE
Confidence            54333 69999999999995 5689999999999999998654 3444567888999999987655 5556655 58999


Q ss_pred             EECCCCc-eeEeec-CCCCeEEEEEecCCcEE-EEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCC
Q 018784          173 WDARSGK-IVQTLE-TKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED  249 (350)
Q Consensus       173 wd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l-~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d  249 (350)
                      ||+-+|. .+..+. ++..|+++.+..++..| +++-|+.+++||..+++.+....++....++.+.+ +++.++.|-.+
T Consensus       222 WDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~-dd~t~viGmsn  300 (487)
T KOG0310|consen  222 WDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSP-DDQTVVIGMSN  300 (487)
T ss_pred             EEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecC-CCceEEEeccc
Confidence            9998664 444443 67889999999887655 55569999999999999999999998888888887 46888999999


Q ss_pred             CeEEEEE
Q 018784          250 MWVHVFD  256 (350)
Q Consensus       250 ~~i~v~d  256 (350)
                      |.+-+=+
T Consensus       301 Glv~~rr  307 (487)
T KOG0310|consen  301 GLVSIRR  307 (487)
T ss_pred             ceeeeeh
Confidence            8766543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=2.8e-28  Score=208.28  Aligned_cols=272  Identities=19%  Similarity=0.260  Sum_probs=214.7

Q ss_pred             CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC--eeeeee-ccccEeEEEEcCCCCeEEEeeCCCeEE
Q 018784           51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD--EKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILR  127 (350)
Q Consensus        51 ~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~--~~~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~  127 (350)
                      .+....+..|.+.|..+.|-++...|+||+.|..|++|+....+  ...++. -.+.++.++|.+++..+++++.|+.++
T Consensus       165 S~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r  244 (459)
T KOG0288|consen  165 SRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR  244 (459)
T ss_pred             hhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence            34556788999999999999998899999999999999986555  233343 346799999999999999999999999


Q ss_pred             EEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE-c
Q 018784          128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-D  206 (350)
Q Consensus       128 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~  206 (350)
                      +|++........+ ..|...|+++.|..... .+++|+.|.+|++||+....+..++-..+.++.+...  ...++++ .
T Consensus       245 ~Wnvd~~r~~~TL-sGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~  320 (459)
T KOG0288|consen  245 LWNVDSLRLRHTL-SGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHF  320 (459)
T ss_pred             eeeccchhhhhhh-cccccceeeehhhcccc-ceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeeccc
Confidence            9999876554444 45999999998874433 3899999999999999999998888877778887776  2333333 5


Q ss_pred             CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCC----CcCEEEEEEcCCC
Q 018784          207 GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGH----HGPVHCVRFSPGG  282 (350)
Q Consensus       207 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h----~~~v~~l~~sp~~  282 (350)
                      |+.||+||.+.........+.....++.+.. ++..+++++.|.++.++|+++.+...++...    ..-.+.+.|||++
T Consensus       321 DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~  399 (459)
T KOG0288|consen  321 DKKVRFWDIRSADKTRSVPLGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDG  399 (459)
T ss_pred             ccceEEEeccCCceeeEeecCcceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCC
Confidence            8899999999999888888877777777766 4677888899999999999998876665432    1237889999999


Q ss_pred             CEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccch
Q 018784          283 ESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGK  340 (350)
Q Consensus       283 ~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~  340 (350)
                      .|+|+||.||.|+||++...+.+......             .....|..+.|.|-|+
T Consensus       400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s-------------~s~~aI~s~~W~~sG~  444 (459)
T KOG0288|consen  400 SYVAAGSADGSVYIWSVFTGKLEKVLSLS-------------TSNAAITSLSWNPSGS  444 (459)
T ss_pred             ceeeeccCCCcEEEEEccCceEEEEeccC-------------CCCcceEEEEEcCCCc
Confidence            99999999999999999876655433221             1112577777777664

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=1.6e-26  Score=198.82  Aligned_cols=240  Identities=18%  Similarity=0.265  Sum_probs=197.8

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      +.||...|..+.|++   +...++++|.|..|+||..-..........|.++|+.+..+|.|.||+++|.||+.-+-|..
T Consensus       257 ~~Gh~kki~~v~~~~---~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~  333 (506)
T KOG0289|consen  257 LKGHTKKITSVKFHK---DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS  333 (506)
T ss_pred             ccCcceEEEEEEecc---chhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEcc
Confidence            479999999999997   78899999999999999988777777889999999999999999999999999999999999


Q ss_pred             CCCeeeeeeccc---cEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784           92 TGDEKHSFEHKH---IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (350)
Q Consensus        92 ~~~~~~~~~h~~---~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg  168 (350)
                      ++..+....+..   .+.+.+|||||.+|.+|..|+.|++||+..+.... .+..|.+.|..++|+. ++.+++++.+|+
T Consensus       334 ~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a-~Fpght~~vk~i~FsE-NGY~Lat~add~  411 (506)
T KOG0289|consen  334 SGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA-KFPGHTGPVKAISFSE-NGYWLATAADDG  411 (506)
T ss_pred             CCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc-cCCCCCCceeEEEecc-CceEEEEEecCC
Confidence            999888877743   37899999999999999999999999998877444 4456999999999984 677888888999


Q ss_pred             eEEEEECCCCceeEeecCC--CCeEEEEEecCCcEEEEEcCCcEEEEECC----CcceeeeeecCCCCceeEecCCCCcE
Q 018784          169 GVRLWDARSGKIVQTLETK--SPVTSAEVSRDGRYITTADGSSVKFWDAN----HFGLVKGYNMPCNTESASLEPKLGNI  242 (350)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~i~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (350)
                      .|++||+|.-+...++...  .++.++.|.+.|++|..+ +..++||-..    ++.++..+...........+....++
T Consensus       412 ~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~  490 (506)
T KOG0289|consen  412 SVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQY  490 (506)
T ss_pred             eEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee-cceeEEEEEecccccceeeehhhhcccccceeeecccceE
Confidence            9999999998877777654  469999999999999776 4445555433    44555555444433333333345689


Q ss_pred             EEEecCCCeEEEEEc
Q 018784          243 FIAGGEDMWVHVFDF  257 (350)
Q Consensus       243 l~sg~~d~~i~v~d~  257 (350)
                      +++++.|..++++.+
T Consensus       491 l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  491 LASTSMDAILRLYAL  505 (506)
T ss_pred             EeeccchhheEEeec
Confidence            999999999888754

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.96  E-value=3.9e-26  Score=187.64  Aligned_cols=284  Identities=20%  Similarity=0.329  Sum_probs=221.2

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc-------eee--------eccCccCCeEEEEECC-CCcEE
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-------WIG--------TFEGHKGAVWSCCLDA-NALFS   76 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~-------~~~--------~l~gH~~~V~~v~~~~-~~~~l   76 (350)
                      +-|.+.|..+...+  ..|+|+++|+.||.+.+||++.-.       ..+        .-.+|+-.|..+-|-| |.-++
T Consensus        40 r~HgGsvNsL~id~--tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF  117 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDL--TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF  117 (397)
T ss_pred             ccCCCccceeeecc--ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence            67999999998887  478999999999999999986432       111        1246888898888866 55678


Q ss_pred             EEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCC---CeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEE
Q 018784           77 ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDT---HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAW  153 (350)
Q Consensus        77 ~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~---~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~  153 (350)
                      .|+|.|.++||||..+.+....+.-++.|++-+++|-.   .++|+|..|-.|++.|+.++.... .+.+|.+.|.++.|
T Consensus       118 tssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH-~LsGHr~~vlaV~W  196 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH-TLSGHRDGVLAVEW  196 (397)
T ss_pred             ecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee-eeccccCceEEEEe
Confidence            89999999999999999988888888999999999843   477888889999999998876543 45678889999999


Q ss_pred             eCCCCcEEEEEeCCCeEEEEECCCC-ceeEeecC---------------CCCeEEEEEecCCcEEE-EEcCCcEEEEECC
Q 018784          154 LHSDQTILSSCTDSGGVRLWDARSG-KIVQTLET---------------KSPVTSAEVSRDGRYIT-TADGSSVKFWDAN  216 (350)
Q Consensus       154 ~~~~~~~~~s~~~dg~i~iwd~~~~-~~~~~~~~---------------~~~v~~~~~~~~~~~l~-~~~~~~i~vwd~~  216 (350)
                      +|....++++|+.||.|++||+|.. .++..+..               .+.++.++|+.++.++. .+.+..+++|+..
T Consensus       197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~  276 (397)
T KOG4283|consen  197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME  276 (397)
T ss_pred             ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence            9999999999999999999999865 44444432               24588899999998775 5678899999987


Q ss_pred             Cccee-eeeecCCC--CceeE--ecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCC
Q 018784          217 HFGLV-KGYNMPCN--TESAS--LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSED  291 (350)
Q Consensus       217 ~~~~~-~~~~~~~~--~~~~~--~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~D  291 (350)
                      ++..- +.+.-.++  .....  ...-+...++---.++.+.++++.+|..++.+.+|...|.|..|.|+-+...+|..|
T Consensus       277 ~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d  356 (397)
T KOG4283|consen  277 SGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMN  356 (397)
T ss_pred             cCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccC
Confidence            65422 11110010  11111  111112333333446889999999999999999998899999999999999999999


Q ss_pred             CcEEEecC
Q 018784          292 GTIRIWQT  299 (350)
Q Consensus       292 g~v~vw~~  299 (350)
                      +.|..|-.
T Consensus       357 ~ni~~w~p  364 (397)
T KOG4283|consen  357 GNIYMWSP  364 (397)
T ss_pred             Cccccccc
Confidence            99999964

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=1.7e-26  Score=202.44  Aligned_cols=283  Identities=19%  Similarity=0.240  Sum_probs=210.1

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC----Cceeeecc-CccCCeEEEEECCCCcEEEEeeCCCeEE
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET----GDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAK   86 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~----~~~~~~l~-gH~~~V~~v~~~~~~~~l~s~s~Dg~v~   86 (350)
                      +++|+..|+++++.|   .|-.++|||-|-+|++||...    -+..+.|. .-...|+++.+++.+..++..+..-..+
T Consensus       163 l~hgtk~Vsal~~Dp---~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak  239 (641)
T KOG0772|consen  163 LKHGTKIVSALAVDP---SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK  239 (641)
T ss_pred             ccCCceEEEEeeecC---CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence            479999999999987   899999999999999999652    12222222 2334688999999998887777788899


Q ss_pred             EeeCCCCCeee-------------eeeccccEeEEEEcCC-CCeEEEeeCCCeEEEEECCCCCCCCeee-----cCCCCc
Q 018784           87 LWDALTGDEKH-------------SFEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPPREV-----GNSSGS  147 (350)
Q Consensus        87 vWd~~~~~~~~-------------~~~h~~~V~~~~~~~~-~~~l~sg~~d~~v~vwd~~~~~~~~~~~-----~~~~~~  147 (350)
                      |+|-.......             +-.|...++|-+|+|. .+.++|++.|+++|+||+.........+     +...-.
T Consensus       240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~  319 (641)
T KOG0772|consen  240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP  319 (641)
T ss_pred             EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence            99854322111             1247788999999995 4678999999999999998654333222     233446


Q ss_pred             EEEEEEeCCCCcEEEEEeCCCeEEEEECCCCc--eeEee-cC---CCCeEEEEEecCCcEEEE-EcCCcEEEEECCCcce
Q 018784          148 IRTVAWLHSDQTILSSCTDSGGVRLWDARSGK--IVQTL-ET---KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGL  220 (350)
Q Consensus       148 v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~--~~~~~-~~---~~~v~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~~  220 (350)
                      +++|+|+++ +.++++|-.||.|.+||.++..  +...+ +.   ...|+++.|+++|++|++ +.|+++++||+++.+.
T Consensus       320 ~tsC~~nrd-g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk  398 (641)
T KOG0772|consen  320 VTSCAWNRD-GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK  398 (641)
T ss_pred             ceeeecCCC-cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence            788999865 4557777788999999986432  22222 12   247999999999998876 5688999999998753


Q ss_pred             -eeeeec-C--CCCceeEecCCCCcEEEEecC------CCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecC
Q 018784          221 -VKGYNM-P--CNTESASLEPKLGNIFIAGGE------DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSE  290 (350)
Q Consensus       221 -~~~~~~-~--~~~~~~~~~~~~~~~l~sg~~------d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~  290 (350)
                       +..... +  -....+.|+| +.+++++|+.      .+++.+||..+.+.+..+..-...|..+.|+|.-+.+..|+.
T Consensus       399 pL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsg  477 (641)
T KOG0772|consen  399 PLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSG  477 (641)
T ss_pred             chhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecC
Confidence             322221 1  1234566666 4688888774      568999999999998888777888999999999888889999


Q ss_pred             CCcEEEecC
Q 018784          291 DGTIRIWQT  299 (350)
Q Consensus       291 Dg~v~vw~~  299 (350)
                      ||.++++--
T Consensus       478 dG~~~vyYd  486 (641)
T KOG0772|consen  478 DGTAHVYYD  486 (641)
T ss_pred             CCceEEEEC
Confidence            999999853

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=3e-26  Score=189.48  Aligned_cols=244  Identities=21%  Similarity=0.347  Sum_probs=192.7

Q ss_pred             cCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee
Q 018784           61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE  140 (350)
Q Consensus        61 ~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~  140 (350)
                      +..|..+.|++.+..|+.+++||+++++|......+..+.|..++.+|+|.++ ..+++|+-|+.|+.+|+..+.  ...
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~--~~~   89 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN--EDQ   89 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCc--cee
Confidence            57799999999888888888999999999998888888899999999999984 468899999999999998543  456


Q ss_pred             ecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcce
Q 018784          141 VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGL  220 (350)
Q Consensus       141 ~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~  220 (350)
                      ++.|...++++.+++ ....+++|++|++|++||.|.......+.....|.++.... .+++++..+..+.+||+|+...
T Consensus        90 igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g-~~LvVg~~~r~v~iyDLRn~~~  167 (323)
T KOG1036|consen   90 IGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSG-NRLVVGTSDRKVLIYDLRNLDE  167 (323)
T ss_pred             eccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccccccCceEEEEeccC-CEEEEeecCceEEEEEcccccc
Confidence            788999999999885 44567889999999999999866666666666777666554 3566667889999999998765


Q ss_pred             ee---eeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccC----eeEEeecCCCc---------CEEEEEEcCCCCE
Q 018784          221 VK---GYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG----EQIGCNKGHHG---------PVHCVRFSPGGES  284 (350)
Q Consensus       221 ~~---~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~----~~~~~~~~h~~---------~v~~l~~sp~~~~  284 (350)
                      ..   .-.+.-.+.++.+.| .+.=+++++-||+|.+=.++..    ..-..++.|..         +|++|+|+|--..
T Consensus       168 ~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t  246 (323)
T KOG1036|consen  168 PFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT  246 (323)
T ss_pred             hhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce
Confidence            43   112222345566666 5677889999999888666554    22344556642         7999999999889


Q ss_pred             EEEecCCCcEEEecCCCCCcccCCCC
Q 018784          285 YASGSEDGTIRIWQTNPPNHEENHSG  310 (350)
Q Consensus       285 lasgs~Dg~v~vw~~~~~~~~~~~~~  310 (350)
                      ||||+.||.|.+||..+.+.+.....
T Consensus       247 faTgGsDG~V~~Wd~~~rKrl~q~~~  272 (323)
T KOG1036|consen  247 FATGGSDGIVNIWDLFNRKRLKQLAK  272 (323)
T ss_pred             EEecCCCceEEEccCcchhhhhhccC
Confidence            99999999999999987776655544

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.7e-25  Score=184.57  Aligned_cols=252  Identities=20%  Similarity=0.315  Sum_probs=201.4

Q ss_pred             ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeecc-ccEeEEEEcCCCCeEEEeeC--CCeEEE
Q 018784           52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHK-HIVRACAFSEDTHLLLTGGF--EKILRI  128 (350)
Q Consensus        52 ~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~sg~~--d~~v~v  128 (350)
                      ++.+.|..-...|.++.|+++|.++++++.|-+++++|..+++.+.++..+ -.|..+.|....+.++.++.  |.+||.
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry   84 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY   84 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence            344455556678999999999999999999999999999999999888754 45777888776666666665  899999


Q ss_pred             EECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCC
Q 018784          129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGS  208 (350)
Q Consensus       129 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~  208 (350)
                      -++.+.. ..+...+|...|.++..+|-+ ..++|++.|++|++||+|..++...+..... ..++++|+|.+++.+.++
T Consensus        85 Lsl~dNk-ylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLifA~~~~~  161 (311)
T KOG1446|consen   85 LSLHDNK-YLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLIFALANGS  161 (311)
T ss_pred             EEeecCc-eEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcEEEEecCC
Confidence            9997644 356678899999999988766 5677889999999999998887766654332 247899999999988765


Q ss_pred             -cEEEEECCCc--ceeeeeecCC----CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCE---EEEEE
Q 018784          209 -SVKFWDANHF--GLVKGYNMPC----NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPV---HCVRF  278 (350)
Q Consensus       209 -~i~vwd~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v---~~l~~  278 (350)
                       .|++||+|.+  ++..++....    ....+.|.+ +|++++.++..+.+++.|.-+|....++.++...-   .+.+|
T Consensus       162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f  240 (311)
T KOG1446|consen  162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF  240 (311)
T ss_pred             CeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence             8999999986  3555555442    123344554 69999999999999999999999988888776543   67899


Q ss_pred             cCCCCEEEEecCCCcEEEecCCCCCcccC
Q 018784          279 SPGGESYASGSEDGTIRIWQTNPPNHEEN  307 (350)
Q Consensus       279 sp~~~~lasgs~Dg~v~vw~~~~~~~~~~  307 (350)
                      +||++++++|+.||+|.+|++..+.....
T Consensus       241 tPds~Fvl~gs~dg~i~vw~~~tg~~v~~  269 (311)
T KOG1446|consen  241 TPDSKFVLSGSDDGTIHVWNLETGKKVAV  269 (311)
T ss_pred             CCCCcEEEEecCCCcEEEEEcCCCcEeeE
Confidence            99999999999999999999976655433

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=9.3e-27  Score=201.43  Aligned_cols=257  Identities=23%  Similarity=0.326  Sum_probs=197.6

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC----------ceeeeccCccCCeEEEEECCC-CcEEEEeeCC
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----------DWIGTFEGHKGAVWSCCLDAN-ALFSASGSAD   82 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~----------~~~~~l~gH~~~V~~v~~~~~-~~~l~s~s~D   82 (350)
                      .|.+.|..+.+.|..|.  ++|+++..+.+.|||..+.          .+-..|.||++.-+.++|++. .-.|++++.|
T Consensus       122 ~h~gEVnRaRymPQnp~--iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d  199 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPN--IVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD  199 (422)
T ss_pred             cCCccchhhhhCCCCCc--EEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence            59999999999997665  9999999999999996432          122378999998888999875 4478999999


Q ss_pred             CeEEEeeCCCCCe-------eeee-eccccEeEEEEcC-CCCeEEEeeCCCeEEEEECCC-CCCCCeeecCCCCcEEEEE
Q 018784           83 FTAKLWDALTGDE-------KHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNR-PDAPPREVGNSSGSIRTVA  152 (350)
Q Consensus        83 g~v~vWd~~~~~~-------~~~~-~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~-~~~~~~~~~~~~~~v~~~~  152 (350)
                      ++|.+||+.....       +..+ .|...|..++|++ +..+|++++.|+.+.|||+++ ...+......|.+.+.+++
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~  279 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA  279 (422)
T ss_pred             CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence            9999999854322       2222 5899999999999 456788999999999999986 3444556678899999999


Q ss_pred             EeCCCCcEEEEEeCCCeEEEEECCCC-ceeEeecC-CCCeEEEEEecCCc-EEE-EEcCCcEEEEECCCcceeeeeecCC
Q 018784          153 WLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLET-KSPVTSAEVSRDGR-YIT-TADGSSVKFWDANHFGLVKGYNMPC  228 (350)
Q Consensus       153 ~~~~~~~~~~s~~~dg~i~iwd~~~~-~~~~~~~~-~~~v~~~~~~~~~~-~l~-~~~~~~i~vwd~~~~~~~~~~~~~~  228 (350)
                      |.|-+..++++|+.|++|.+||+|+- +++..+.. ...|..+.|+|... .|+ ++.|+.+.+||+..-...+.-.   
T Consensus       280 fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e---  356 (422)
T KOG0264|consen  280 FNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE---  356 (422)
T ss_pred             eCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh---
Confidence            99999999999999999999999975 45566654 56799999999754 333 3457788888875433221100   


Q ss_pred             CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCE-EEEecCCCcEEEecCC
Q 018784          229 NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGES-YASGSEDGTIRIWQTN  300 (350)
Q Consensus       229 ~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~-lasgs~Dg~v~vw~~~  300 (350)
                                +       ..|        ...++++.-.||...|..+.|+|+.+. ++|.+.|+.+.||+..
T Consensus       357 ----------d-------a~d--------gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  357 ----------D-------AED--------GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ----------h-------hcc--------CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                      0       000        012344556689999999999999876 6899999999999864

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=3.3e-27  Score=196.39  Aligned_cols=245  Identities=20%  Similarity=0.305  Sum_probs=204.8

Q ss_pred             ccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee---------eccccEeEEEEcCCCCeEEEeeCCCeEEEEE
Q 018784           60 HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF---------EHKHIVRACAFSEDTHLLLTGGFEKILRIFD  130 (350)
Q Consensus        60 H~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~---------~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd  130 (350)
                      ...-+.|..|+||+++|+|||.||-|.+||..+|+.+.-+         -+...|.|+.|+.|..+|++|+.||.|++|.
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr  291 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR  291 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence            3455778899999999999999999999999888755433         2677899999999999999999999999999


Q ss_pred             CCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEE-EEcCC
Q 018784          131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYIT-TADGS  208 (350)
Q Consensus       131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~~  208 (350)
                      +.++.+..+....|...|+++.|+. ++..+++++.|.++++.-+++|+++..+.++ +.++...|.++|..+. +++|+
T Consensus       292 i~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg  370 (508)
T KOG0275|consen  292 IETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG  370 (508)
T ss_pred             EecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence            9999888877778899999999985 4556778899999999999999999999876 5688899999997765 56799


Q ss_pred             cEEEEECCCcceeeeeecCCC---CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec-C--CCcCEEEEEEcCCC
Q 018784          209 SVKFWDANHFGLVKGYNMPCN---TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK-G--HHGPVHCVRFSPGG  282 (350)
Q Consensus       209 ~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~-~--h~~~v~~l~~sp~~  282 (350)
                      +|++|+..+..+..++.....   ...+.+.|++...++++...++|++-++. |+.++.+. |  ..+..-+.+.||.|
T Consensus       371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkG  449 (508)
T KOG0275|consen  371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKG  449 (508)
T ss_pred             cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCC
Confidence            999999999998888765443   23556677888999999999999999875 56666553 2  23456778899999


Q ss_pred             CEEEEecCCCcEEEecCCCCCccc
Q 018784          283 ESYASGSEDGTIRIWQTNPPNHEE  306 (350)
Q Consensus       283 ~~lasgs~Dg~v~vw~~~~~~~~~  306 (350)
                      .++.+.++|+.++.+.+..+..+-
T Consensus       450 ewiYcigED~vlYCF~~~sG~LE~  473 (508)
T KOG0275|consen  450 EWIYCIGEDGVLYCFSVLSGKLER  473 (508)
T ss_pred             cEEEEEccCcEEEEEEeecCceee
Confidence            999999999999999987666553

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=9.2e-28  Score=202.16  Aligned_cols=245  Identities=22%  Similarity=0.401  Sum_probs=202.4

Q ss_pred             ceeeeccCccCCeEEEEECCCC-cEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEE
Q 018784           52 DWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIF  129 (350)
Q Consensus        52 ~~~~~l~gH~~~V~~v~~~~~~-~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vw  129 (350)
                      .++..|.||.+.|.+++-+|.. ..+|||+.||.|++||+.+..+..++ .|.+.|+.+++..  ..++++|+|.+|+.|
T Consensus        57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~w  134 (433)
T KOG0268|consen   57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQW  134 (433)
T ss_pred             cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeee
Confidence            4567889999999999999877 68899999999999999998888877 5899999999987  668899999999999


Q ss_pred             ECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcE-EE-EEc
Q 018784          130 DLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRY-IT-TAD  206 (350)
Q Consensus       130 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~-l~-~~~  206 (350)
                      .++.+  +.... .....+..+... .....+++||+  .|.|||.+...++..+.- ...+.++.|+|.... |+ +++
T Consensus       135 k~~~~--p~~ti-lg~s~~~gIdh~-~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~s  208 (433)
T KOG0268|consen  135 KIDGP--PLHTI-LGKSVYLGIDHH-RKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCAS  208 (433)
T ss_pred             eccCC--cceee-eccccccccccc-cccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeecc
Confidence            88753  22221 123344455432 34567888886  599999988888888774 356889999997653 44 347


Q ss_pred             CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccC-eeEEeecCCCcCEEEEEEcCCCCEE
Q 018784          207 GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG-EQIGCNKGHHGPVHCVRFSPGGESY  285 (350)
Q Consensus       207 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l  285 (350)
                      |+.|.+||+|+..+++...+...+..++++| ..-.|++|++|..++.||++.. +++....+|.+.|.++.|||.|+-+
T Consensus       209 DrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Ef  287 (433)
T KOG0268|consen  209 DRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEF  287 (433)
T ss_pred             CCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchh
Confidence            9999999999999999888888888999999 7889999999999999999875 4567788999999999999999999


Q ss_pred             EEecCCCcEEEecCCCCCcc
Q 018784          286 ASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       286 asgs~Dg~v~vw~~~~~~~~  305 (350)
                      +|||.|.+|+||.++.....
T Consensus       288 vsgsyDksIRIf~~~~~~SR  307 (433)
T KOG0268|consen  288 VSGSYDKSIRIFPVNHGHSR  307 (433)
T ss_pred             ccccccceEEEeecCCCcch
Confidence            99999999999988654433

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.6e-26  Score=207.68  Aligned_cols=232  Identities=16%  Similarity=0.294  Sum_probs=193.4

Q ss_pred             CCCcEEEEeeCCCeEEEeeCCCCCe------eeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCC-CCCeeec
Q 018784           71 ANALFSASGSADFTAKLWDALTGDE------KHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD-APPREVG  142 (350)
Q Consensus        71 ~~~~~l~s~s~Dg~v~vWd~~~~~~------~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-~~~~~~~  142 (350)
                      +.+++|+|||.||.|++|+...-..      ...+ .|...|+.+.+..+++.|+++|.|-+|++|+..... .-...+.
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir  114 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR  114 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence            5677899999999999999754322      2223 488899999999999999999999999999987653 2235567


Q ss_pred             CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC--ceeEeec----------CCCCeEEEEEecCCcEEEEE-cCCc
Q 018784          143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG--KIVQTLE----------TKSPVTSAEVSRDGRYITTA-DGSS  209 (350)
Q Consensus       143 ~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~--~~~~~~~----------~~~~v~~~~~~~~~~~l~~~-~~~~  209 (350)
                      .|...|.++++...+..+++||+-|+.|++||+.++  +.+..+.          ...++.+++.++.|.+++++ ..+.
T Consensus       115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~  194 (735)
T KOG0308|consen  115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD  194 (735)
T ss_pred             cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence            899999999987778889999999999999999987  3333322          23578999999999877765 4788


Q ss_pred             EEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEec
Q 018784          210 VKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS  289 (350)
Q Consensus       210 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs  289 (350)
                      +++||.++.+.+-.+..+.....+.+..++|..++++++|++|++||+...+++.++..|...||++..+|+-..+.+|+
T Consensus       195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~  274 (735)
T KOG0308|consen  195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGG  274 (735)
T ss_pred             eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecC
Confidence            99999999887777776655555556666899999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEecCCCC
Q 018784          290 EDGTIRIWQTNPP  302 (350)
Q Consensus       290 ~Dg~v~vw~~~~~  302 (350)
                      .||.|+.=|++.+
T Consensus       275 rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  275 RDGNIYRTDLRNP  287 (735)
T ss_pred             CCCcEEecccCCc
Confidence            9999999888764

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=7.9e-26  Score=182.90  Aligned_cols=246  Identities=22%  Similarity=0.293  Sum_probs=199.1

Q ss_pred             eeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeee---eeccccEeEEEEcC-CCCeEEEeeCCCeEEEEE
Q 018784           55 GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS---FEHKHIVRACAFSE-DTHLLLTGGFEKILRIFD  130 (350)
Q Consensus        55 ~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~---~~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd  130 (350)
                      +.+.+|.+.|.+|+|..+|..|++|+.|+++++|+++..+....   ..|...|-.++|+| +...|++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            56789999999999999999999999999999999876643332   25888888888876 667899999999999999


Q ss_pred             CCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcC-Cc
Q 018784          131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG-SS  209 (350)
Q Consensus       131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~  209 (350)
                      ....+..... . ..+.-.-+.|+|+++.++ .+..|..|.+.|.++.+.+...+....++.++|+.++.++...++ |.
T Consensus        94 ~r~~k~~~~i-~-~~~eni~i~wsp~g~~~~-~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~  170 (313)
T KOG1407|consen   94 IRSGKCTARI-E-TKGENINITWSPDGEYIA-VGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC  170 (313)
T ss_pred             eccCcEEEEe-e-ccCcceEEEEcCCCCEEE-EecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence            9866543322 2 233344677887766555 456777999999999999998888888999999977776655554 89


Q ss_pred             EEEEECCCcceeeeeecCC-CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEe
Q 018784          210 VKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASG  288 (350)
Q Consensus       210 i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasg  288 (350)
                      |.|..-...+++.++.-+. +..++.+.| .|++|++|+.|..+-+||+.+.-+++++.-+.-+|..++||-+|++||||
T Consensus       171 v~ILsypsLkpv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa  249 (313)
T KOG1407|consen  171 VEILSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA  249 (313)
T ss_pred             EEEEeccccccccccccCCcceEEEEECC-CCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence            9998877777777766544 344555665 69999999999999999999988889999999999999999999999999


Q ss_pred             cCCCcEEEecCCCCCc
Q 018784          289 SEDGTIRIWQTNPPNH  304 (350)
Q Consensus       289 s~Dg~v~vw~~~~~~~  304 (350)
                      |+|..|-|=++.++..
T Consensus       250 SEDh~IDIA~vetGd~  265 (313)
T KOG1407|consen  250 SEDHFIDIAEVETGDR  265 (313)
T ss_pred             CccceEEeEecccCCe
Confidence            9999997766655543

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=5.2e-27  Score=188.65  Aligned_cols=242  Identities=18%  Similarity=0.281  Sum_probs=197.9

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      |-||++.|+....+-   +....|+++.|=+.++||.-+|..+.+|+ |..-|.+++|+.|..+|+||+.+..+||+|++
T Consensus        55 feghkgavw~~~l~~---na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln  130 (334)
T KOG0278|consen   55 FEGHKGAVWSATLNK---NATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLN  130 (334)
T ss_pred             eeccCcceeeeecCc---hhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhcc
Confidence            469999999987764   66788999999999999999999999887 88899999999999999999999999999987


Q ss_pred             CCC--eeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe
Q 018784           92 TGD--EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (350)
Q Consensus        92 ~~~--~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~  169 (350)
                      ..+  +...-.|++.|+.+-|....+.+++...|++||+||..++.......  ....|.++..++ ++.++..+ +-+.
T Consensus       131 ~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs~-dG~ilTia-~gss  206 (334)
T KOG0278|consen  131 RPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVTSLEVSQ-DGRILTIA-YGSS  206 (334)
T ss_pred             CCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCcceeecc-CCCEEEEe-cCce
Confidence            655  23344699999999999888999999999999999998776544433  344577887765 55555554 4479


Q ss_pred             EEEEECCCCceeEeecCCCCeEEEEEecCCcEEEE-EcCCcEEEEECCCcceeeee-ecCC-CCceeEecCCCCcEEEEe
Q 018784          170 VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGY-NMPC-NTESASLEPKLGNIFIAG  246 (350)
Q Consensus       170 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~l~sg  246 (350)
                      |++||..+...+...+.+..|.+....|+..++++ +.+..++.||-.++..+-.+ ..+. ...++.|.| +|...++|
T Consensus       207 V~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAsG  285 (334)
T KOG0278|consen  207 VKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYASG  285 (334)
T ss_pred             eEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeecc
Confidence            99999999999999999999999999998766655 46789999999998877665 2222 334555665 69999999


Q ss_pred             cCCCeEEEEEcccCee
Q 018784          247 GEDMWVHVFDFHTGEQ  262 (350)
Q Consensus       247 ~~d~~i~v~d~~~~~~  262 (350)
                      |+||+|++|....++.
T Consensus       286 SEDGTirlWQt~~~~~  301 (334)
T KOG0278|consen  286 SEDGTIRLWQTTPGKT  301 (334)
T ss_pred             CCCceEEEEEecCCCc
Confidence            9999999999865543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=7.5e-26  Score=205.29  Aligned_cols=266  Identities=17%  Similarity=0.257  Sum_probs=212.9

Q ss_pred             EEEEEeCCCCeeEeeCCCC---ce----------ee------------------------eccCccCCeEEEEECCCCcE
Q 018784           33 FLVSASKDSSPMLRNGETG---DW----------IG------------------------TFEGHKGAVWSCCLDANALF   75 (350)
Q Consensus        33 ~lasgs~d~~v~iw~~~~~---~~----------~~------------------------~l~gH~~~V~~v~~~~~~~~   75 (350)
                      -+.|+|.|++||+|+++.+   ..          ++                        ..-+-.-.+++++++|++++
T Consensus       394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh  473 (1080)
T KOG1408|consen  394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH  473 (1080)
T ss_pred             ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence            3689999999999997642   11          00                        00123345789999999999


Q ss_pred             EEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcC---CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEE
Q 018784           76 SASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSE---DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV  151 (350)
Q Consensus        76 l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~---~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~  151 (350)
                      ||+|..-|++||+++...+....+ .|...|.|+.|+.   ..++||+++.|+.|.|||+.....+...+-.|...|+++
T Consensus       474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsv  553 (1080)
T KOG1408|consen  474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSV  553 (1080)
T ss_pred             ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEE
Confidence            999999999999999876655544 5999999999975   357899999999999999988777777778899999999


Q ss_pred             EEeCCC-CcEEEEEeCCCeEEEEECCC----CceeEe---ecCCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceee
Q 018784          152 AWLHSD-QTILSSCTDSGGVRLWDARS----GKIVQT---LETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVK  222 (350)
Q Consensus       152 ~~~~~~-~~~~~s~~~dg~i~iwd~~~----~~~~~~---~~~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~  222 (350)
                      .|.-.+ +..+++|+.|+.| +++...    |.....   ...+..+..+++.|+.++++++ .|+.|+|||+.+++..+
T Consensus       554 KFa~~gln~~MiscGADksi-mFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k  632 (1080)
T KOG1408|consen  554 KFACNGLNRKMISCGADKSI-MFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK  632 (1080)
T ss_pred             EEeecCCceEEEeccCchhh-heehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceee
Confidence            998655 4567788888655 444432    221111   1124568889999998887654 68999999999999988


Q ss_pred             eeecCC----CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          223 GYNMPC----NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       223 ~~~~~~----~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      .+....    ....+.+.| .+-|+++...|+++.++|..+|+++....||...|+.|.|.+|-+.|++.+.||+|.||.
T Consensus       633 ~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~  711 (1080)
T KOG1408|consen  633 SFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK  711 (1080)
T ss_pred             eecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence            887643    234556665 589999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 018784          299 TN  300 (350)
Q Consensus       299 ~~  300 (350)
                      +.
T Consensus       712 lp  713 (1080)
T KOG1408|consen  712 LP  713 (1080)
T ss_pred             Cc
Confidence            86

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=7.1e-26  Score=181.55  Aligned_cols=247  Identities=18%  Similarity=0.212  Sum_probs=188.0

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC---ceeeeccCccCCeEEEEECC--CCcEEEEeeCCCeEEE
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---DWIGTFEGHKGAVWSCCLDA--NALFSASGSADFTAKL   87 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~---~~~~~l~gH~~~V~~v~~~~--~~~~l~s~s~Dg~v~v   87 (350)
                      .+|.+-|.++..+-   .|+.|||+|+|++|+|+...+.   +++.+|.||+++|+-++|..  -|.+|||++.||.|.|
T Consensus         8 t~H~D~IHda~lDy---ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi   84 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDY---YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII   84 (299)
T ss_pred             hhhhhhhhHhhhhh---hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence            57888888775543   6899999999999999997653   56889999999999999953  7999999999999999


Q ss_pred             eeCCCCCeee---eeeccccEeEEEEcC--CCCeEEEeeCCCeEEEEECCCC-C-CCCeeecCCCCcEEEEEEeCCC--C
Q 018784           88 WDALTGDEKH---SFEHKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRP-D-APPREVGNSSGSIRTVAWLHSD--Q  158 (350)
Q Consensus        88 Wd~~~~~~~~---~~~h~~~V~~~~~~~--~~~~l~sg~~d~~v~vwd~~~~-~-~~~~~~~~~~~~v~~~~~~~~~--~  158 (350)
                      |.-+.++-..   ...|...|++++|.|  .|-.|++++.||.|.|.+.+.. . ...+....|.-.+.++.|.|..  +
T Consensus        85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g  164 (299)
T KOG1332|consen   85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG  164 (299)
T ss_pred             EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence            9987764211   125889999999988  4678999999999999987653 1 2233446677788999998751  1


Q ss_pred             -----------cEEEEEeCCCeEEEEECCCCc--eeEeecCC-CCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeee
Q 018784          159 -----------TILSSCTDSGGVRLWDARSGK--IVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY  224 (350)
Q Consensus       159 -----------~~~~s~~~dg~i~iwd~~~~~--~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~  224 (350)
                                 +.+++|+.|+.|+||+..+++  .-.++..+ .-++.+++.|.-.+                       
T Consensus       165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl-----------------------  221 (299)
T KOG1332|consen  165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL-----------------------  221 (299)
T ss_pred             cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC-----------------------
Confidence                       458899999999999987752  22234333 34666777664110                       


Q ss_pred             ecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccC-ee--EEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          225 NMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG-EQ--IGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~-~~--~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                                    ...+++++++|+++.||..+.. +.  ...+......++.++||+.|.+|+.++.|..|.+|.-
T Consensus       222 --------------~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  222 --------------PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             --------------CceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence                          1357899999999999976521 11  2234456778999999999999999999999999964

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=3.1e-25  Score=210.15  Aligned_cols=265  Identities=20%  Similarity=0.336  Sum_probs=203.7

Q ss_pred             ccCCeEEEEECCCCcEEEEee--CCCeEEEeeCCCC------------Ceeee-eeccccEeEEEEcCCCCeEEEeeCCC
Q 018784           60 HKGAVWSCCLDANALFSASGS--ADFTAKLWDALTG------------DEKHS-FEHKHIVRACAFSEDTHLLLTGGFEK  124 (350)
Q Consensus        60 H~~~V~~v~~~~~~~~l~s~s--~Dg~v~vWd~~~~------------~~~~~-~~h~~~V~~~~~~~~~~~l~sg~~d~  124 (350)
                      +..+|.++.++|++..+||||  .||.++||+...-            +.+.+ ..|.+.|.|+.|+|||++||+|+.|+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~   91 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR   91 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence            456789999999999999999  9999999975311            11112 24899999999999999999999999


Q ss_pred             eEEEEECCCC--C--------C-------CCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-
Q 018784          125 ILRIFDLNRP--D--------A-------PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-  186 (350)
Q Consensus       125 ~v~vwd~~~~--~--------~-------~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-  186 (350)
                      .|.||.....  .        .       .......|.+.|..+.|+| +..++++++-|++|.+|+.++++.+..+.. 
T Consensus        92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H  170 (942)
T KOG0973|consen   92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGH  170 (942)
T ss_pred             eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeecc
Confidence            9999987620  0        0       1122346888999999997 778999999999999999999988888875 


Q ss_pred             CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCC-------CceeEecCCCCcEEEEecC----CCeEEE
Q 018784          187 KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-------TESASLEPKLGNIFIAGGE----DMWVHV  254 (350)
Q Consensus       187 ~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~sg~~----d~~i~v  254 (350)
                      ++.|..+.|+|-|+|+++- +|++|+||.+.++...+..+.+-.       ..-.++.| +|++|++.-.    -..+.|
T Consensus       171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP-DG~~las~nA~n~~~~~~~I  249 (942)
T KOG0973|consen  171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP-DGHHLASPNAVNGGKSTIAI  249 (942)
T ss_pred             cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC-CcCeecchhhccCCcceeEE
Confidence            5678999999999999874 688999999888887776655422       12344555 5888887543    346888


Q ss_pred             EEcccCeeEEeecCCCcCEEEEEEcCC-----CC------------EEEEecCCCcEEEecCCCCCcccCCCCCCCcccc
Q 018784          255 FDFHTGEQIGCNKGHHGPVHCVRFSPG-----GE------------SYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTG  317 (350)
Q Consensus       255 ~d~~~~~~~~~~~~h~~~v~~l~~sp~-----~~------------~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~  317 (350)
                      .+-.+.+.-..+.||..++.+++|+|.     ..            .+|+||.|++|-||....++.....         
T Consensus       250 ieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi---------  320 (942)
T KOG0973|consen  250 IERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI---------  320 (942)
T ss_pred             EecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh---------
Confidence            888778877889999999999999982     11            5789999999999987655443222         


Q ss_pred             ccccccccceeeeeeEEEcccch
Q 018784          318 KLKASTDEVTRKIEGFHINKEGK  340 (350)
Q Consensus       318 ~~~~~~~~~~~~i~~~~~~~~g~  340 (350)
                           -+-....|.++.|+|||.
T Consensus       321 -----~~lf~~SI~DmsWspdG~  338 (942)
T KOG0973|consen  321 -----HNLFNKSIVDMSWSPDGF  338 (942)
T ss_pred             -----hhhhcCceeeeeEcCCCC
Confidence                 223344566666666664

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=5.7e-25  Score=182.34  Aligned_cols=316  Identities=16%  Similarity=0.228  Sum_probs=224.0

Q ss_pred             eeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeee
Q 018784           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS   98 (350)
Q Consensus        19 v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~   98 (350)
                      -.|+.|++   -|.+||+|..||.+.|||..+....++|.+|.-+|.+++|+++|++|+|+|.|-.|++||+..+.+...
T Consensus        26 a~~~~Fs~---~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r  102 (405)
T KOG1273|consen   26 AECCQFSR---WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR  102 (405)
T ss_pred             cceEEecc---CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence            45777886   789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccccEeEEEEcCCCCeE-EEeeCCCeEEEEECCCCCCC--CeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEEC
Q 018784           99 FEHKHIVRACAFSEDTHLL-LTGGFEKILRIFDLNRPDAP--PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (350)
Q Consensus        99 ~~h~~~V~~~~~~~~~~~l-~sg~~d~~v~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~  175 (350)
                      +....+|..+.|+|..... ++.-.+..-.+-++..+...  ........+.+-+..++...+.++.+|..-|.+.++|.
T Consensus       103 irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a  182 (405)
T KOG1273|consen  103 IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA  182 (405)
T ss_pred             EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence            9999999999999954333 33333333344444332111  00001111112222244566788889999999999999


Q ss_pred             CCCceeEeecCC--CCeEEEEEecCCcEEEE-EcCCcEEEEECCCccee---------eeee-c--CCCCceeEecCCCC
Q 018784          176 RSGKIVQTLETK--SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLV---------KGYN-M--PCNTESASLEPKLG  240 (350)
Q Consensus       176 ~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~~~---------~~~~-~--~~~~~~~~~~~~~~  240 (350)
                      .+.+++..+...  ..|.++.++..|++++. ..|+.||.|+++..-..         +.+. +  ...-..+.|+. +|
T Consensus       183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-dg  261 (405)
T KOG1273|consen  183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-DG  261 (405)
T ss_pred             chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC-Cc
Confidence            999998877643  57889999999988765 46899999997632111         1110 0  01112344544 68


Q ss_pred             cEEEEecC-CCeEEEEEcccCeeEEeecCCC-cCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccc
Q 018784          241 NIFIAGGE-DMWVHVFDFHTGEQIGCNKGHH-GPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGK  318 (350)
Q Consensus       241 ~~l~sg~~-d~~i~v~d~~~~~~~~~~~~h~-~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~  318 (350)
                      .|+++|+. -..+++|.-..|.++..+.|.. .....+.|+|-...+++- ..|.|++|.....+.-....+  +  .-.
T Consensus       262 eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~enwsafAP--d--Fqe  336 (405)
T KOG1273|consen  262 EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVENWSAFAP--D--FQE  336 (405)
T ss_pred             cEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecccchhhcCc--h--HHH
Confidence            88887774 4579999999999999998887 567889999999999887 678999998754433222211  1  111


Q ss_pred             cccccccceeeeeeEEEcccchhHhh
Q 018784          319 LKASTDEVTRKIEGFHINKEGKAEEK  344 (350)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~~g~~~~~  344 (350)
                      +.. ..+...+..+|.+..|.++++.
T Consensus       337 lee-NieY~EkEdeFDi~DE~~~e~~  361 (405)
T KOG1273|consen  337 LEE-NIEYEEKEDEFDIEDEDEQEQE  361 (405)
T ss_pred             HHh-hhhhccccccCCcccccccchh
Confidence            111 2234455567777655555443

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3.8e-26  Score=208.89  Aligned_cols=235  Identities=20%  Similarity=0.281  Sum_probs=184.4

Q ss_pred             EEEecccCCCccEEEEEeCCCCeeEeeCCC---CceeeeccCccCCeEEEEECC-CCcEEEEeeCCCeEEEeeCCCCCee
Q 018784           21 DLFYSPITPDGFFLVSASKDSSPMLRNGET---GDWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALTGDEK   96 (350)
Q Consensus        21 ~~~~~~~s~dg~~lasgs~d~~v~iw~~~~---~~~~~~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~~~~~   96 (350)
                      .|.++  +-+..+|||++..|.|.+||+..   .+.+..|..|+..|.+++|++ ...+|+|||.||+||+||+...+..
T Consensus        92 DVkW~--~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~  169 (839)
T KOG0269|consen   92 DVKWG--QLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK  169 (839)
T ss_pred             hcccc--cchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence            44555  34677999999999999999977   667778999999999999976 5789999999999999999877765


Q ss_pred             eee-eccccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 018784           97 HSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD  174 (350)
Q Consensus        97 ~~~-~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd  174 (350)
                      .++ ...+.|+.+.|+| .+..++++...|.+++||++.+......+..|.+.|.++.|.| ++.++++|+.|++|+|||
T Consensus       170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd  248 (839)
T KOG0269|consen  170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWD  248 (839)
T ss_pred             ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEe
Confidence            554 4667899999998 6788999999999999999988877777889999999999987 788999999999999999


Q ss_pred             CCCC--ceeEeecCCCCeEEEEEecCCcE-EEEE---cCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecC
Q 018784          175 ARSG--KIVQTLETKSPVTSAEVSRDGRY-ITTA---DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE  248 (350)
Q Consensus       175 ~~~~--~~~~~~~~~~~v~~~~~~~~~~~-l~~~---~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~  248 (350)
                      +.++  +++.+++.-.++..+.|-|.-.+ |+++   .+..|+|||++..                              
T Consensus       249 ~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP------------------------------  298 (839)
T KOG0269|consen  249 MTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP------------------------------  298 (839)
T ss_pred             ccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc------------------------------
Confidence            9865  46778888889999999987543 3322   2445666665421                              


Q ss_pred             CCeEEEEEcccCeeEEeecCCCcCEEEEEEcC-CCCEEEEecCCCcEEEecC
Q 018784          249 DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSP-GGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       249 d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp-~~~~lasgs~Dg~v~vw~~  299 (350)
                                 --+..++..|...++.++|-. |...|.++|.|++|..-..
T Consensus       299 -----------YIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~  339 (839)
T KOG0269|consen  299 -----------YIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF  339 (839)
T ss_pred             -----------cccceeeeccCccccceeccCCCceeeEeecCccHHHHhhh
Confidence                       122334556777777777753 3445677777777765543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=6.1e-25  Score=198.88  Aligned_cols=240  Identities=23%  Similarity=0.341  Sum_probs=189.7

Q ss_pred             ccccce-eEeeccCCceeE-EEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeC
Q 018784            4 RKVAVP-LVCHGHSRPVVD-LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA   81 (350)
Q Consensus         4 ~~~~~~-~~~~gH~~~v~~-~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~   81 (350)
                      .+..++ ..+.+|.+-|.. ++|-+  .++-.+++|+.|.++.+|......++.+|.||+..|.++....++. ++|||.
T Consensus        44 ~~~~l~~~~~~~~~g~i~~~i~y~e--~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSW  120 (745)
T KOG0301|consen   44 GKQYLETHAFEGPKGFIANSICYAE--SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSW  120 (745)
T ss_pred             CcccccceecccCcceeeccceecc--ccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEeccc
Confidence            344455 456788888887 88876  4666789999999999999999999999999999999998887777 899999


Q ss_pred             CCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEE
Q 018784           82 DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL  161 (350)
Q Consensus        82 Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  161 (350)
                      |.++++|-....... ...|+..|+++++-|.+ .++|||.|.+||+|.-.   ...+.+..|...|+.++..+..  -+
T Consensus       121 D~TakvW~~~~l~~~-l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~--~f  193 (745)
T KOG0301|consen  121 DSTAKVWRIGELVYS-LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDS--HF  193 (745)
T ss_pred             ccceEEecchhhhcc-cCCcchheeeeeecCCC-cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCC--Ce
Confidence            999999986433221 33699999999999988 78899999999999753   3445567799999999998643  37


Q ss_pred             EEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEE-ecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCc-eeEecCC
Q 018784          162 SSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEV-SRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPK  238 (350)
Q Consensus       162 ~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~-~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~  238 (350)
                      +||+.||.|++|++ +|+++..+.. .+-+.++.. .+++.++.++.|+++++|+..  .+.+.+..|.... ++.+-+ 
T Consensus       194 lScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~-  269 (745)
T KOG0301|consen  194 LSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL-  269 (745)
T ss_pred             EeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee-
Confidence            89999999999999 6777666664 466888884 456667778899999999976  6777777776432 333222 


Q ss_pred             CCcEEEEecCCCeEEEEEcc
Q 018784          239 LGNIFIAGGEDMWVHVFDFH  258 (350)
Q Consensus       239 ~~~~l~sg~~d~~i~v~d~~  258 (350)
                       ..-+++|++||.||||...
T Consensus       270 -NgDIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  270 -NGDIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             -CCCEEEeccCceEEEEEec
Confidence             3447889999999999865

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=7e-25  Score=182.08  Aligned_cols=249  Identities=20%  Similarity=0.382  Sum_probs=194.3

Q ss_pred             ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEE
Q 018784           52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFD  130 (350)
Q Consensus        52 ~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd  130 (350)
                      ++++.|.||.+.|+-++....-..+.|+|.|.+.+||.++++.++..+ .|.+.|++++|++++.++++++.|++..||.
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~  218 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK  218 (481)
T ss_pred             eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence            456789999999999998776678999999999999999999998877 6999999999999999999999999999997


Q ss_pred             ------CCCCCC---------------------------------CCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEE
Q 018784          131 ------LNRPDA---------------------------------PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (350)
Q Consensus       131 ------~~~~~~---------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~  171 (350)
                            +.++..                                 +...+..|.+.|.++.|.. ++..+++++.|++-.
T Consensus       219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAn  297 (481)
T KOG0300|consen  219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTAN  297 (481)
T ss_pred             HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeeccccce
Confidence                  221100                                 1112234566777777874 455678899999999


Q ss_pred             EEECCCCceeEeecCC-CCeEEEEEecCCcEEEEE-cCCcEEEEECCCc-ceeeeeecCCCCceeEecCCCCcEEEEecC
Q 018784          172 LWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHF-GLVKGYNMPCNTESASLEPKLGNIFIAGGE  248 (350)
Q Consensus       172 iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~  248 (350)
                      +||+++++++..+.++ ...+.++-+|..++++++ .|.+.|+||.+.. ..+..|..+........+. .+..+++|+.
T Consensus       298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~-~dd~vVSgSD  376 (481)
T KOG0300|consen  298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFN-TDDRVVSGSD  376 (481)
T ss_pred             eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEe-cCCceeecCC
Confidence            9999999999998864 678888888988887765 5789999999842 2233444444333333332 3577999999


Q ss_pred             CCeEEEEEcccCe-eEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCC
Q 018784          249 DMWVHVFDFHTGE-QIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPN  303 (350)
Q Consensus       249 d~~i~v~d~~~~~-~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~  303 (350)
                      |.+|++||+++-+ ++.++. -..+++.++.+..++.+|.-=....|++||++...
T Consensus       377 DrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R  431 (481)
T KOG0300|consen  377 DRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR  431 (481)
T ss_pred             CceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence            9999999998754 455554 34578999999888888888888899999986444

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=6e-25  Score=190.42  Aligned_cols=242  Identities=21%  Similarity=0.300  Sum_probs=190.8

Q ss_pred             ceeEee--ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeE
Q 018784            8 VPLVCH--GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (350)
Q Consensus         8 ~~~~~~--gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v   85 (350)
                      +|+..+  +|-..+.+++.+|   ||+|||+|+.|..+.||+..+.+.++.+.+|.+.|.+++|-.....+.++|.|++|
T Consensus       192 ~~~k~~r~~h~keil~~avS~---Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsv  268 (479)
T KOG0299|consen  192 NPLKESRKGHVKEILTLAVSS---DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSV  268 (479)
T ss_pred             CCCCcccccccceeEEEEEcC---CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCce
Confidence            344443  8999999998886   99999999999999999999999999999999999999998888888999999999


Q ss_pred             EEeeCCCCCeeee-eeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEE
Q 018784           86 KLWDALTGDEKHS-FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (350)
Q Consensus        86 ~vWd~~~~~~~~~-~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~  164 (350)
                      ++|++.....+.+ +.|...|.++.-..-...+.+|+.|+++++|++....  ....-++.+.+-+++|...+  .+++|
T Consensus       269 kvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees--qlifrg~~~sidcv~~In~~--HfvsG  344 (479)
T KOG0299|consen  269 KVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES--QLIFRGGEGSIDCVAFINDE--HFVSG  344 (479)
T ss_pred             EEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc--eeeeeCCCCCeeeEEEeccc--ceeec
Confidence            9999876655444 5799999999888777777778899999999995332  23334567789999998543  48899


Q ss_pred             eCCCeEEEEECCCCceeEeecC-------------CCCeEEEEEecCCcEEEEEc-CCcEEEEECCCc----ceeeeeec
Q 018784          165 TDSGGVRLWDARSGKIVQTLET-------------KSPVTSAEVSRDGRYITTAD-GSSVKFWDANHF----GLVKGYNM  226 (350)
Q Consensus       165 ~~dg~i~iwd~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~----~~~~~~~~  226 (350)
                      +++|.|.+|++-..+++.+...             +.-|++++..|...++++++ +|.||+|-+..+    .++..+.+
T Consensus       345 SdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~  424 (479)
T KOG0299|consen  345 SDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL  424 (479)
T ss_pred             cCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc
Confidence            9999999999998887766542             12578999999999988775 789999987654    34445555


Q ss_pred             CCCCceeEecCCCCcEEEEecCCCeEEEEE
Q 018784          227 PCNTESASLEPKLGNIFIAGGEDMWVHVFD  256 (350)
Q Consensus       227 ~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d  256 (350)
                      ......+.|.+....+++..+....+--|-
T Consensus       425 ~GfVNsl~f~~sgk~ivagiGkEhRlGRW~  454 (479)
T KOG0299|consen  425 VGFVNSLAFSNSGKRIVAGIGKEHRLGRWW  454 (479)
T ss_pred             ccEEEEEEEccCCCEEEEecccccccceee
Confidence            555556666665444666666666655553

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.94  E-value=4.5e-25  Score=182.65  Aligned_cols=252  Identities=17%  Similarity=0.225  Sum_probs=191.2

Q ss_pred             Ccccccc-eeE--eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccC--ccCCeEEEEECCCCcEE
Q 018784            2 DKRKVAV-PLV--CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG--HKGAVWSCCLDANALFS   76 (350)
Q Consensus         2 ~~~~~~~-~~~--~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~g--H~~~V~~v~~~~~~~~l   76 (350)
                      ++++.+. |.+  +--|.++|.++.|+|   ...+|++||.|++++++|..+....+.++-  -...|+++.|+|.|.++
T Consensus       155 ~~~~qa~hPvIRTlYDH~devn~l~FHP---re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefl  231 (430)
T KOG0640|consen  155 SGDTQARHPVIRTLYDHVDEVNDLDFHP---RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFL  231 (430)
T ss_pred             cCCcccCCceEeehhhccCcccceeecc---hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceE
Confidence            4555666 544  237999999999998   667999999999999999876655444443  34679999999999999


Q ss_pred             EEeeCCCeEEEeeCCCCCeeeee----eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCC-CcEEEE
Q 018784           77 ASGSADFTAKLWDALTGDEKHSF----EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS-GSIRTV  151 (350)
Q Consensus        77 ~s~s~Dg~v~vWd~~~~~~~~~~----~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~-~~v~~~  151 (350)
                      +.|-...++|++|+++-++....    .|++.|+++.+++.+++-++|+.||.|++||--+..+.......|. ..|++.
T Consensus       232 lvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa  311 (430)
T KOG0640|consen  232 LVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSA  311 (430)
T ss_pred             EEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeE
Confidence            99999999999999998876654    4889999999999999999999999999999766555544444444 456666


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCC------CeEEEEEecCCcEEEEEcC--CcEEEEECCCcceeee
Q 018784          152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS------PVTSAEVSRDGRYITTADG--SSVKFWDANHFGLVKG  223 (350)
Q Consensus       152 ~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~~--~~i~vwd~~~~~~~~~  223 (350)
                      .|. .+++++++.+.|.++++|.+.+++++....+.+      --+...|+....++..-+.  +.+.-||.|+...+..
T Consensus       312 ~Ft-kn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l  390 (430)
T KOG0640|consen  312 VFT-KNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL  390 (430)
T ss_pred             EEc-cCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh
Confidence            666 466777788899999999999999988876431      1233446666666655443  5688899998765554


Q ss_pred             eecCCC-CceeEecCCCCcEEEEecCCCeEEEEEc
Q 018784          224 YNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDF  257 (350)
Q Consensus       224 ~~~~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~  257 (350)
                      ..+..+ ........+.+.-|++|+.|..+++|--
T Consensus       391 ~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  391 LSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             cccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence            444322 3334445556788999999999999953

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.3e-23  Score=173.73  Aligned_cols=266  Identities=18%  Similarity=0.312  Sum_probs=183.2

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCC----CCceeeeccCccCCeEEEEEC-C-CCcEEEEeeCCCeE
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE----TGDWIGTFEGHKGAVWSCCLD-A-NALFSASGSADFTA   85 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~----~~~~~~~l~gH~~~V~~v~~~-~-~~~~l~s~s~Dg~v   85 (350)
                      -.||.+=|.++.|++   .|+.+||+|.|.+++|||..    +..+....+.|.++|+.+.|. | -|+.+|++|.|+++
T Consensus         9 ~s~h~DlihdVs~D~---~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv   85 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDF---YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV   85 (361)
T ss_pred             ccCCcceeeeeeecc---cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence            369999999999986   89999999999999999953    234566788999999999994 4 49999999999999


Q ss_pred             EEeeCCCCC---------eeeee-eccccEeEEEEcCC--CCeEEEeeCCCeEEEEECCCCCCCC------------eee
Q 018784           86 KLWDALTGD---------EKHSF-EHKHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDAPP------------REV  141 (350)
Q Consensus        86 ~vWd~~~~~---------~~~~~-~h~~~V~~~~~~~~--~~~l~sg~~d~~v~vwd~~~~~~~~------------~~~  141 (350)
                      +||+-....         ...++ .....|+.+.|.|.  |-.||+++.||++|||+...+....            ...
T Consensus        86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp  165 (361)
T KOG2445|consen   86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP  165 (361)
T ss_pred             eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence            999742111         11222 35678999999984  6788999999999999875432111            112


Q ss_pred             cCCCCcEEEEEEeCC--CCcEEEEEeCC-----CeEEEEECCCCc----eeEeec-CCCCeEEEEEecCC----cEEEEE
Q 018784          142 GNSSGSIRTVAWLHS--DQTILSSCTDS-----GGVRLWDARSGK----IVQTLE-TKSPVTSAEVSRDG----RYITTA  205 (350)
Q Consensus       142 ~~~~~~v~~~~~~~~--~~~~~~s~~~d-----g~i~iwd~~~~~----~~~~~~-~~~~v~~~~~~~~~----~~l~~~  205 (350)
                      +.+.....++.|.+.  ...+++.|+++     +.++||....+.    .+.++. +..+|+.++|.|+-    .+|+++
T Consensus       166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA  245 (361)
T KOG2445|consen  166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA  245 (361)
T ss_pred             ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence            235556778888753  23456666554     478999765432    222332 45789999999962    345554


Q ss_pred             c-CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCE
Q 018784          206 D-GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGES  284 (350)
Q Consensus       206 ~-~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~  284 (350)
                      . || |+||.++.......                .+-+.++..-..+      .-+.+..+.+|.+.|+.++|.=.|..
T Consensus       246 ~kDg-v~I~~v~~~~s~i~----------------~ee~~~~~~~~~l------~v~~vs~~~~H~~~VWrv~wNmtGti  302 (361)
T KOG2445|consen  246 TKDG-VRIFKVKVARSAIE----------------EEEVLAPDLMTDL------PVEKVSELDDHNGEVWRVRWNMTGTI  302 (361)
T ss_pred             ecCc-EEEEEEeeccchhh----------------hhcccCCCCcccc------ceEEeeeccCCCCceEEEEEeeeeeE
Confidence            4 45 88888753221000                0000011100111      11334557789999999999999999


Q ss_pred             EEEecCCCcEEEecCCCCC
Q 018784          285 YASGSEDGTIRIWQTNPPN  303 (350)
Q Consensus       285 lasgs~Dg~v~vw~~~~~~  303 (350)
                      |+|.|.||+||+|.....+
T Consensus       303 LsStGdDG~VRLWkany~n  321 (361)
T KOG2445|consen  303 LSSTGDDGCVRLWKANYNN  321 (361)
T ss_pred             EeecCCCceeeehhhhhhh
Confidence            9999999999999865433

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.93  E-value=2.4e-24  Score=194.95  Aligned_cols=297  Identities=18%  Similarity=0.263  Sum_probs=224.4

Q ss_pred             cccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc---------------------ee---------
Q 018784            5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---------------------WI---------   54 (350)
Q Consensus         5 ~~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~---------------------~~---------   54 (350)
                      ++.+=+++.||++-|.+++|.....+.-+|||+|.|..||||.+.-+.                     .+         
T Consensus       180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~  259 (764)
T KOG1063|consen  180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF  259 (764)
T ss_pred             ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence            455666779999999999999877767899999999999999853211                     11         


Q ss_pred             -eeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCee-------------------------------------
Q 018784           55 -GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK-------------------------------------   96 (350)
Q Consensus        55 -~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~-------------------------------------   96 (350)
                       ..+.||.+-|+++-|+|.+..|.|+|.|.++.+|...+...+                                     
T Consensus       260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg  339 (764)
T KOG1063|consen  260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG  339 (764)
T ss_pred             hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence             123599999999999999999999999999999975432110                                     


Q ss_pred             -eee---------------eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCe---eecCCCCcEEEEEEeCCC
Q 018784           97 -HSF---------------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR---EVGNSSGSIRTVAWLHSD  157 (350)
Q Consensus        97 -~~~---------------~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~  157 (350)
                       +.+               .|...|+.++|+|.|.+|++.|.|.+-|+|-....+....   ..+-|.-.+.++++.+. 
T Consensus       340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~-  418 (764)
T KOG1063|consen  340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE-  418 (764)
T ss_pred             EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC-
Confidence             000               1677899999999999999999999999997652222111   12345566788888754 


Q ss_pred             CcEEEEEeCCCeEEEEECCC----------C-----c-----------------eeE---------------ee------
Q 018784          158 QTILSSCTDSGGVRLWDARS----------G-----K-----------------IVQ---------------TL------  184 (350)
Q Consensus       158 ~~~~~s~~~dg~i~iwd~~~----------~-----~-----------------~~~---------------~~------  184 (350)
                      ...+++|.+...+|+++...          +     .                 .+.               +.      
T Consensus       419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~  498 (764)
T KOG1063|consen  419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC  498 (764)
T ss_pred             CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence            66788998888899997532          1     0                 000               00      


Q ss_pred             ------------------------cCCCCeEEEEEecCCcEEEEEc------CCcEEEEECCCcceeeeeecCCCCceeE
Q 018784          185 ------------------------ETKSPVTSAEVSRDGRYITTAD------GSSVKFWDANHFGLVKGYNMPCNTESAS  234 (350)
Q Consensus       185 ------------------------~~~~~v~~~~~~~~~~~l~~~~------~~~i~vwd~~~~~~~~~~~~~~~~~~~~  234 (350)
                                              .+...+.+++.+|++++++++.      ...|++|+..+...++.+..+.......
T Consensus       499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l  578 (764)
T KOG1063|consen  499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL  578 (764)
T ss_pred             hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE
Confidence                                    0112588999999999998863      2359999998877777666666555555


Q ss_pred             ecCCCCcEEEEecCCCeEEEEEcccCee----EEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCC
Q 018784          235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQ----IGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPP  302 (350)
Q Consensus       235 ~~~~~~~~l~sg~~d~~i~v~d~~~~~~----~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~  302 (350)
                      ..++++++|++.+.|+++.+|.......    ....+.|..-|++..|+|++.++||+|.|.+|++|.....
T Consensus       579 ~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  579 AFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             EECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence            5555799999999999999998754332    2346789999999999999999999999999999987654

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=5.7e-24  Score=191.01  Aligned_cols=280  Identities=19%  Similarity=0.284  Sum_probs=199.6

Q ss_pred             EEEecccCCCccEEEEEeCCCCeeEeeCCCCce------eeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC
Q 018784           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDW------IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD   94 (350)
Q Consensus        21 ~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~------~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~   94 (350)
                      ++.|++-....++||.+-.||.|.|+|......      ++....|.+.|.-+.|-|-...|++++.|.++|+||+.++.
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~  133 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR  133 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence            466776555568999999999999999765433      24567899999999999977789999999999999998887


Q ss_pred             eee---eeeccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCC-------------------CCe-------eecCC
Q 018784           95 EKH---SFEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDA-------------------PPR-------EVGNS  144 (350)
Q Consensus        95 ~~~---~~~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~-------------------~~~-------~~~~~  144 (350)
                      ...   .+.|...|.+++|.|.. ..|++|+.|+.|.|||+.-...                   +..       ....+
T Consensus       134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~  213 (720)
T KOG0321|consen  134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA  213 (720)
T ss_pred             eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence            554   35899999999999954 6788999999999999742110                   000       00112


Q ss_pred             CCcEEE---EEEeCCCCcEEEEEeC-CCeEEEEECCCCceeEeec------C--C----CCeEEEEEecCCcEE-EEEcC
Q 018784          145 SGSIRT---VAWLHSDQTILSSCTD-SGGVRLWDARSGKIVQTLE------T--K----SPVTSAEVSRDGRYI-TTADG  207 (350)
Q Consensus       145 ~~~v~~---~~~~~~~~~~~~s~~~-dg~i~iwd~~~~~~~~~~~------~--~----~~v~~~~~~~~~~~l-~~~~~  207 (350)
                      .+.+.+   +.++. |+..+++++. |+.|++||++........+      .  +    -.+.++.....|.+| +...|
T Consensus       214 s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD  292 (720)
T KOG0321|consen  214 SNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD  292 (720)
T ss_pred             cCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence            233333   33443 4455666555 9999999999765433221      1  1    245666666667665 55579


Q ss_pred             CcEEEEECCCcce--eeeeecCCC--CceeEecCCCCcEEEEecCCCeEEEEEcccCee-EEeecCCCcCEEEEEEcCCC
Q 018784          208 SSVKFWDANHFGL--VKGYNMPCN--TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ-IGCNKGHHGPVHCVRFSPGG  282 (350)
Q Consensus       208 ~~i~vwd~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~-~~~~~~h~~~v~~l~~sp~~  282 (350)
                      +.|.+|++++...  +..+....+  .........++.++++|+.|...++|.+.+.+. ...+.||...|++++|.|..
T Consensus       293 ~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~  372 (720)
T KOG0321|consen  293 NSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA  372 (720)
T ss_pred             CcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence            9999999987542  222221111  112223344689999999999999999988654 45678999999999999853


Q ss_pred             -CEEEEecCCCcEEEecCCC
Q 018784          283 -ESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       283 -~~lasgs~Dg~v~vw~~~~  301 (350)
                       .-+++++.|-++++|++..
T Consensus       373 ~t~v~TcSdD~~~kiW~l~~  392 (720)
T KOG0321|consen  373 TTPVATCSDDFRVKIWRLSN  392 (720)
T ss_pred             CCCceeeccCcceEEEeccC
Confidence             3367779999999999843

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=5.8e-23  Score=163.28  Aligned_cols=247  Identities=21%  Similarity=0.340  Sum_probs=189.2

Q ss_pred             ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC------C----CC------eeeeeeccccEeEEEEcCCCC
Q 018784           52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL------T----GD------EKHSFEHKHIVRACAFSEDTH  115 (350)
Q Consensus        52 ~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~------~----~~------~~~~~~h~~~V~~~~~~~~~~  115 (350)
                      +++.+|+ -+..|++++|+|.|.+.|.||...+.||--..      .    .+      ++....|++.|+|.+|+|.|+
T Consensus        24 ~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge  102 (350)
T KOG0641|consen   24 EAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE  102 (350)
T ss_pred             EEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC
Confidence            3455555 46789999999999999999999999997421      1    11      111224889999999999999


Q ss_pred             eEEEeeCCCeEEEEECCCCCC----CCeeecCCCCcEEEEEEeCC---CCcEEEEEe-CCCeEEEEECCCCceeEeecCC
Q 018784          116 LLLTGGFEKILRIFDLNRPDA----PPREVGNSSGSIRTVAWLHS---DQTILSSCT-DSGGVRLWDARSGKIVQTLETK  187 (350)
Q Consensus       116 ~l~sg~~d~~v~vwd~~~~~~----~~~~~~~~~~~v~~~~~~~~---~~~~~~s~~-~dg~i~iwd~~~~~~~~~~~~~  187 (350)
                      ++++|+.|.+|++...+....    .-..+.-|.+.|+.++|...   .+.++++++ .|-.|++-|...|+.++.+..+
T Consensus       103 liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sgh  182 (350)
T KOG0641|consen  103 LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGH  182 (350)
T ss_pred             eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCC
Confidence            999999999999986543221    12244568899999999853   345666554 5567777788899988888766


Q ss_pred             C-CeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCC--------CCceeEecCCCCcEEEEecCCCeEEEEEc
Q 018784          188 S-PVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPC--------NTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (350)
Q Consensus       188 ~-~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~sg~~d~~i~v~d~  257 (350)
                      . -|.++ ++=++-+++++ .|.+||+||+|-..+++.+.-..        ....+.+.| .+++|++|-.|....+||+
T Consensus       183 tghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~dssc~lydi  260 (350)
T KOG0641|consen  183 TGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHADSSCMLYDI  260 (350)
T ss_pred             cccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-CcceeeeccCCCceEEEEe
Confidence            4 34443 44456666665 47899999999888877653211        122334444 5899999999999999999


Q ss_pred             ccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784          258 HTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       258 ~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~  301 (350)
                      +.++++..+..|+..|.++.|+|.-.||.++|.|..|++=|+..
T Consensus       261 rg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  261 RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             eCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence            99999999999999999999999999999999999999998853

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=1.8e-23  Score=192.93  Aligned_cols=291  Identities=19%  Similarity=0.251  Sum_probs=214.9

Q ss_pred             EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCc-EEEEeeCCCeEEEee
Q 018784           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWD   89 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~-~l~s~s~Dg~v~vWd   89 (350)
                      .++++...|+++--+|   -=..+|.|..+|+|.|.++..++.+.+|+--.++|.+++|..||. ++|+|+..|.+-+||
T Consensus       197 ~f~~~~s~IT~ieqsP---aLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wD  273 (910)
T KOG1539|consen  197 TFQEFFSRITAIEQSP---ALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWD  273 (910)
T ss_pred             EecccccceeEeccCC---cceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEE
Confidence            3589999999996665   556999999999999999999999999985579999999999986 678888889999999


Q ss_pred             CCCCCeeeee--eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC---eeecCCCCcEEEEEEeC---------
Q 018784           90 ALTGDEKHSF--EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP---REVGNSSGSIRTVAWLH---------  155 (350)
Q Consensus        90 ~~~~~~~~~~--~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~~~~~~v~~~~~~~---------  155 (350)
                      ++..+....+  .|.+.|....|-|....+++++.|..+++|=.+++...+   +...+|..+..++.|..         
T Consensus       274 Le~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa  353 (910)
T KOG1539|consen  274 LEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSA  353 (910)
T ss_pred             cCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEec
Confidence            9887766554  488899999999999999999999999988433221111   11112222222222221         


Q ss_pred             --------------------------------------------------------------------------------
Q 018784          156 --------------------------------------------------------------------------------  155 (350)
Q Consensus       156 --------------------------------------------------------------------------------  155 (350)
                                                                                                      
T Consensus       354 ~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~  433 (910)
T KOG1539|consen  354 KQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT  433 (910)
T ss_pred             ccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc
Confidence                                                                                            


Q ss_pred             ------------------------CCCcEEEEEeCCCeEEEEECCCCceeEee----cCCCCeEEEEEecCCcEEE-EEc
Q 018784          156 ------------------------SDQTILSSCTDSGGVRLWDARSGKIVQTL----ETKSPVTSAEVSRDGRYIT-TAD  206 (350)
Q Consensus       156 ------------------------~~~~~~~s~~~dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~-~~~  206 (350)
                                              ..+++.+.|+..|+|-++++.+|-....+    .+..+|+.++...-++.++ ++.
T Consensus       434 ~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~  513 (910)
T KOG1539|consen  434 SGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGA  513 (910)
T ss_pred             cccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccC
Confidence                                    12334444455566666666666554444    2345677777666555444 445


Q ss_pred             CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEE
Q 018784          207 GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYA  286 (350)
Q Consensus       207 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~la  286 (350)
                      +|.+++||..+..++............. ......+++.+..|-.|+++|..+.+.++.+.||.+.|++++|||||++|+
T Consensus       514 ~Gilkfw~f~~k~l~~~l~l~~~~~~iv-~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWli  592 (910)
T KOG1539|consen  514 DGILKFWDFKKKVLKKSLRLGSSITGIV-YHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLI  592 (910)
T ss_pred             cceEEEEecCCcceeeeeccCCCcceee-eeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEE
Confidence            7888888887776666555543333222 223356788888999999999999999999999999999999999999999


Q ss_pred             EecCCCcEEEecCCCCCcc
Q 018784          287 SGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       287 sgs~Dg~v~vw~~~~~~~~  305 (350)
                      +++.|++|++||+.+....
T Consensus       593 sasmD~tIr~wDlpt~~lI  611 (910)
T KOG1539|consen  593 SASMDSTIRTWDLPTGTLI  611 (910)
T ss_pred             EeecCCcEEEEeccCccee
Confidence            9999999999999876665

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=1.2e-22  Score=179.75  Aligned_cols=259  Identities=16%  Similarity=0.130  Sum_probs=189.5

Q ss_pred             eccCCceeEEEecccCCCccEE-EEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEE-EeeCCCeEEEeeC
Q 018784           13 HGHSRPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSADFTAKLWDA   90 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~l-asgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~-s~s~Dg~v~vWd~   90 (350)
                      .+|.. +..+.|+|   +|+.+ ++++.|+.+++||..+++.+..+..|.. +..+++++++..++ +++.|+.|++||+
T Consensus        28 ~~~~~-~~~l~~~~---dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~  102 (300)
T TIGR03866        28 PVGQR-PRGITLSK---DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDI  102 (300)
T ss_pred             ECCCC-CCceEECC---CCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEEC
Confidence            44443 56788876   88765 6778899999999999998887776544 45788999988664 5567899999999


Q ss_pred             CCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCC-eEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe
Q 018784           91 LTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK-ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (350)
Q Consensus        91 ~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~-~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~  169 (350)
                      .+.+.+..+.+...+.+++|+|++.++++++.++ .+.+||..+........  ....+..++|++.++.+++++..++.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~  180 (300)
T TIGR03866       103 ETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRPRFAEFTADGKELWVSSEIGGT  180 (300)
T ss_pred             CCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCccEEEECCCCCEEEEEcCCCCE
Confidence            8877776666555678999999999999888765 56778986543322111  22345678888776666677777899


Q ss_pred             EEEEECCCCceeEeecCC--------CCeEEEEEecCCcEEEE--EcCCcEEEEECCCcceeeeeecCCCCceeEecCCC
Q 018784          170 VRLWDARSGKIVQTLETK--------SPVTSAEVSRDGRYITT--ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKL  239 (350)
Q Consensus       170 i~iwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~--~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  239 (350)
                      |++||+++++.+..+...        .....+.++|+++++..  +.++.+.+||+++++.............+.+.+ +
T Consensus       181 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~  259 (300)
T TIGR03866       181 VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTP-D  259 (300)
T ss_pred             EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECC-C
Confidence            999999999876665421        12345789999987543  345689999999877765544344455666766 4


Q ss_pred             CcEEEEe-cCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcC
Q 018784          240 GNIFIAG-GEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSP  280 (350)
Q Consensus       240 ~~~l~sg-~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp  280 (350)
                      +++|+++ +.++.|++||+.+++.+..+... ...+.++|+|
T Consensus       260 g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       260 EKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             CCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence            6666654 57899999999999998888754 4558888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=6.6e-26  Score=205.93  Aligned_cols=234  Identities=22%  Similarity=0.295  Sum_probs=189.5

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~   92 (350)
                      -.|...|.++..-   ..++.+++|+.|..+.+|.......+..|.+|+.+|.++.|+++..+++.|+.||+||+||+++
T Consensus        25 ~~hsaav~~lk~~---~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee  101 (825)
T KOG0267|consen   25 VAHSAAVGCLKIR---KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE  101 (825)
T ss_pred             hhhhhhhceeeee---ccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence            3588888887642   3678999999999999999888888888999999999999999999999999999999999999


Q ss_pred             CCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEE
Q 018784           93 GDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (350)
Q Consensus        93 ~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~  171 (350)
                      .+.++++ .|...+.+++|+|.+.++++|+.|.-+++||.....+.... ..|...+..+.|. +++++++++++|.+++
T Consensus       102 Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~-~s~~~vv~~l~ls-P~Gr~v~~g~ed~tvk  179 (825)
T KOG0267|consen  102 AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY-KSHTRVVDVLRLS-PDGRWVASGGEDNTVK  179 (825)
T ss_pred             hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeee-cCCcceeEEEeec-CCCceeeccCCcceee
Confidence            8877776 68889999999999999999999999999999865554444 4477777777776 5778899999999999


Q ss_pred             EEECCCCceeEeec-CCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCC
Q 018784          172 LWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM  250 (350)
Q Consensus       172 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~  250 (350)
                      |||...|+.+..+. +...+.++.|+|..-+                                         +++|+.|+
T Consensus       180 i~d~~agk~~~ef~~~e~~v~sle~hp~e~L-----------------------------------------la~Gs~d~  218 (825)
T KOG0267|consen  180 IWDLTAGKLSKEFKSHEGKVQSLEFHPLEVL-----------------------------------------LAPGSSDR  218 (825)
T ss_pred             eecccccccccccccccccccccccCchhhh-----------------------------------------hccCCCCc
Confidence            99999999988887 4456666666664433                                         44555556


Q ss_pred             eEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCC
Q 018784          251 WVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG  292 (350)
Q Consensus       251 ~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg  292 (350)
                      ++++||+++-+.+.........|.+++|+|++..+++|.++.
T Consensus       219 tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  219 TVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS  260 (825)
T ss_pred             eeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence            666666555555555555566788899999988888877654

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.93  E-value=1.4e-23  Score=181.88  Aligned_cols=287  Identities=20%  Similarity=0.221  Sum_probs=217.8

Q ss_pred             EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC----ceeeeccCccCCeEEEEECCCC-cEEEEeeCCCeE
Q 018784           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----DWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTA   85 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~----~~~~~l~gH~~~V~~v~~~~~~-~~l~s~s~Dg~v   85 (350)
                      |.+-|.++|++++|+|..+ -++||+|..-|+|-+||+.+.    .-+.-+..|+.+|.++.|+|.. ..+.+.|.||+|
T Consensus       181 v~kv~~~Rit~l~fHPt~~-~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti  259 (498)
T KOG4328|consen  181 VAKVTDRRITSLAFHPTEN-RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI  259 (498)
T ss_pred             eeEecccceEEEEecccCc-ceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence            4577899999999999543 369999999999999998433    2345678899999999999854 577899999999


Q ss_pred             EEeeCCCCCeeeeee---ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEE
Q 018784           86 KLWDALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS  162 (350)
Q Consensus        86 ~vWd~~~~~~~~~~~---h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  162 (350)
                      |+=|++.+.....+.   .......++|+.+...++.+..=|...+||+..+........-|...|.++++.|....+++
T Consensus       260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la  339 (498)
T KOG4328|consen  260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA  339 (498)
T ss_pred             eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence            999998765433332   23356788898888888888877799999998766544444556679999999999999999


Q ss_pred             EEeCCCeEEEEECCCCc-----eeEeecCCCCeEEEEEecCC-cEEEEEcCCcEEEEECC----CcceeeeeecCCC---
Q 018784          163 SCTDSGGVRLWDARSGK-----IVQTLETKSPVTSAEVSRDG-RYITTADGSSVKFWDAN----HFGLVKGYNMPCN---  229 (350)
Q Consensus       163 s~~~dg~i~iwd~~~~~-----~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~i~vwd~~----~~~~~~~~~~~~~---  229 (350)
                      +|+-|++.+|||+|.-.     .+..+.+...|.+..|+|.+ .+++++.|..|||||..    ...+...+...+.   
T Consensus       340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~R  419 (498)
T KOG4328|consen  340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGR  419 (498)
T ss_pred             ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccc
Confidence            99999999999998632     25566777899999999965 66677789999999984    2222223322221   


Q ss_pred             ---CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCc-CEEE-EEEcCCCCEEEE-ecCCCcEEEecC
Q 018784          230 ---TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHG-PVHC-VRFSPGGESYAS-GSEDGTIRIWQT  299 (350)
Q Consensus       230 ---~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~-~v~~-l~~sp~~~~las-gs~Dg~v~vw~~  299 (350)
                         ...+.+.| +..++++|-.-..|-+||-..++.+..+..... .|.+ ..|+|-+..+++ |+.-|.|+||.-
T Consensus       420 wlT~fKA~W~P-~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~  494 (498)
T KOG4328|consen  420 WLTPFKAAWDP-DYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN  494 (498)
T ss_pred             cccchhheeCC-CccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence               12344555 568899999999999999988888777654433 4554 579999885555 556789999954

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.93  E-value=3e-24  Score=188.49  Aligned_cols=251  Identities=21%  Similarity=0.325  Sum_probs=187.6

Q ss_pred             CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe----eeeee--ccccEeEEEEcCCCCeEEEeeCCC
Q 018784           51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE----KHSFE--HKHIVRACAFSEDTHLLLTGGFEK  124 (350)
Q Consensus        51 ~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~----~~~~~--h~~~V~~~~~~~~~~~l~sg~~d~  124 (350)
                      +..--.|.+|+..|.++++.|.|..|+|||-|-+|++||+.....    ...+.  ....|+++.|++.+..|++.+...
T Consensus       157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a  236 (641)
T KOG0772|consen  157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA  236 (641)
T ss_pred             ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence            334457899999999999999999999999999999999864332    11221  345799999999999999999999


Q ss_pred             eEEEEECCCCCCC-----------CeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCc-eeEeecC------
Q 018784          125 ILRIFDLNRPDAP-----------PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK-IVQTLET------  186 (350)
Q Consensus       125 ~v~vwd~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~-~~~~~~~------  186 (350)
                      ..+|+|-+.....           ....++|...+++.+|.|.....+++|+.||++|+||+...+ .+..+.+      
T Consensus       237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~  316 (641)
T KOG0772|consen  237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK  316 (641)
T ss_pred             ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence            9999997532211           112356777888889998888889999999999999997653 2333332      


Q ss_pred             CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcc-----eeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccC
Q 018784          187 KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFG-----LVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG  260 (350)
Q Consensus       187 ~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~  260 (350)
                      .-++++++|+++|++++++ .||.|.+|+.+...     .++.-+.+....++..+..++++|++-+.|+++++||++..
T Consensus       317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~  396 (641)
T KOG0772|consen  317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF  396 (641)
T ss_pred             ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence            2468999999999998776 58999999976532     22222333333344444457999999999999999999875


Q ss_pred             e-eEEeecCCC--cCEEEEEEcCCCCEEEEecC------CCcEEEecCCC
Q 018784          261 E-QIGCNKGHH--GPVHCVRFSPGGESYASGSE------DGTIRIWQTNP  301 (350)
Q Consensus       261 ~-~~~~~~~h~--~~v~~l~~sp~~~~lasgs~------Dg~v~vw~~~~  301 (350)
                      + ++....+-.  -+-+.++|||+.+++++|..      .|.+.++|..+
T Consensus       397 kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t  446 (641)
T KOG0772|consen  397 KKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT  446 (641)
T ss_pred             ccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence            4 455444433  24578999999999999874      46788887653

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.92  E-value=2.5e-23  Score=169.05  Aligned_cols=206  Identities=19%  Similarity=0.286  Sum_probs=167.3

Q ss_pred             eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCC
Q 018784           98 SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS  177 (350)
Q Consensus        98 ~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~  177 (350)
                      ...|..+++.+.|+.+|.+|.+++.|.+..+|-...++. ......|.+.|+++... .+...+++|+.|.++++||+++
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-lGty~GHtGavW~~Did-~~s~~liTGSAD~t~kLWDv~t   83 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-LGTYDGHTGAVWCCDID-WDSKHLITGSADQTAKLWDVET   83 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-eeeecCCCceEEEEEec-CCcceeeeccccceeEEEEcCC
Confidence            346999999999999999999999999999997654443 34557799999999865 4567788999999999999999


Q ss_pred             CceeEeecCCCCeEEEEEecCCcEEEEEcC------CcEEEEECCC-------cceeeeeecCCCCceeEecCCCCcEEE
Q 018784          178 GKIVQTLETKSPVTSAEVSRDGRYITTADG------SSVKFWDANH-------FGLVKGYNMPCNTESASLEPKLGNIFI  244 (350)
Q Consensus       178 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------~~i~vwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (350)
                      |+++..++.+.++..+.|+++|.+++.+.|      +.|.++|++.       ..++..+..+........-.+.++.++
T Consensus        84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii  163 (327)
T KOG0643|consen   84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII  163 (327)
T ss_pred             CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence            999999999999999999999988766543      4699999983       233444443332222333334589999


Q ss_pred             EecCCCeEEEEEcccCee-EEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784          245 AGGEDMWVHVFDFHTGEQ-IGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       245 sg~~d~~i~v~d~~~~~~-~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~  305 (350)
                      +|.+||.|..||+++|.+ +.....|...|+.|+|+||..++++||.|.+-++||....+.+
T Consensus       164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~  225 (327)
T KOG0643|consen  164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVL  225 (327)
T ss_pred             EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeE
Confidence            999999999999999855 4555789999999999999999999999999999998754443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=4e-23  Score=179.46  Aligned_cols=265  Identities=20%  Similarity=0.274  Sum_probs=205.3

Q ss_pred             EEEEEeCCCC-eeEeeCCCCceeeeccCcc-CCeEEEEECCCCcEEE-EeeCCCeEEEeeCCCCCeee-eeeccccEeEE
Q 018784           33 FLVSASKDSS-PMLRNGETGDWIGTFEGHK-GAVWSCCLDANALFSA-SGSADFTAKLWDALTGDEKH-SFEHKHIVRAC  108 (350)
Q Consensus        33 ~lasgs~d~~-v~iw~~~~~~~~~~l~gH~-~~V~~v~~~~~~~~l~-s~s~Dg~v~vWd~~~~~~~~-~~~h~~~V~~~  108 (350)
                      ++.++|.|.. +.+||+.+|.-+.++++-. ..-.++.. -.+.+++ +-..-..+-+|.+....... ..--++.|.++
T Consensus         9 ~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~-l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al   87 (476)
T KOG0646|consen    9 VCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTA-LNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHAL   87 (476)
T ss_pred             EEeccCCCCcceeEEecCCCceeEEecCcccccchhhhh-hchhheeeecccCccccccccCchhhhhhhcccccceeee
Confidence            4455566655 8999999999888887642 11112211 1223444 34455688999986554433 34467889999


Q ss_pred             EEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECC---------CCc
Q 018784          109 AFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR---------SGK  179 (350)
Q Consensus       109 ~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~---------~~~  179 (350)
                      +-+|.|.+|+.|...+.+.+|.+.++...... ..|-..|+++.|+. ++.++++|+.||.|.+|++.         +-+
T Consensus        88 ~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~  165 (476)
T KOG0646|consen   88 ASSNLGYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVK  165 (476)
T ss_pred             ecCCCceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCcc
Confidence            99999999999989999999999988765544 66778899999984 66788899999999999763         234


Q ss_pred             eeEeecCC-CCeEEEEEec---CCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEE
Q 018784          180 IVQTLETK-SPVTSAEVSR---DGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVF  255 (350)
Q Consensus       180 ~~~~~~~~-~~v~~~~~~~---~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~  255 (350)
                      ++..+..| -+|+++.+.+   +.++++++.|.++++||+..+.++.++.++....++.+.|. .+.+.+|+.+|.|.+.
T Consensus       166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpa-e~~~yiGt~~G~I~~~  244 (476)
T KOG0646|consen  166 PLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPA-ERVVYIGTEEGKIFQN  244 (476)
T ss_pred             ceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEccc-ccEEEecCCcceEEee
Confidence            55556544 5788888875   45778888899999999999999999999888888888874 6788899999999988


Q ss_pred             EcccC----------------eeEEeecCCCc--CEEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784          256 DFHTG----------------EQIGCNKGHHG--PVHCVRFSPGGESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       256 d~~~~----------------~~~~~~~~h~~--~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~  301 (350)
                      ++...                ..+..+.||.+  .|+|++++-||.+|+||+.||.|+|||...
T Consensus       245 ~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S  308 (476)
T KOG0646|consen  245 LLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS  308 (476)
T ss_pred             ehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence            76432                23456789988  999999999999999999999999999753

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=1e-23  Score=184.60  Aligned_cols=277  Identities=17%  Similarity=0.212  Sum_probs=214.6

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCC---CCceeeeccC--ccCCeEEEEECCCCcEEEEeeCCCeEEEe
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE---TGDWIGTFEG--HKGAVWSCCLDANALFSASGSADFTAKLW   88 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~---~~~~~~~l~g--H~~~V~~v~~~~~~~~l~s~s~Dg~v~vW   88 (350)
                      .|.+-|-++..+.   ..+.+.||+. |.|+|||+.   +..++..|..  ..+-|+++.+.+|++.|++||.--++-||
T Consensus       417 ~HGEvVcAvtIS~---~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW  492 (705)
T KOG0639|consen  417 AHGEVVCAVTISN---PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW  492 (705)
T ss_pred             ccCcEEEEEEecC---CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence            5777776776554   6678999887 889999974   2345555654  34678999999999999999999999999


Q ss_pred             eCCCCCeeeeeec---cccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe
Q 018784           89 DALTGDEKHSFEH---KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (350)
Q Consensus        89 d~~~~~~~~~~~h---~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~  165 (350)
                      |+..........-   ....++++.+||.+...++..||.|.|||+..... .+.+..|...+.++..++ ++.-+-+|+
T Consensus       493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~-VrqfqGhtDGascIdis~-dGtklWTGG  570 (705)
T KOG0639|consen  493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISK-DGTKLWTGG  570 (705)
T ss_pred             eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee-eecccCCCCCceeEEecC-CCceeecCC
Confidence            9976654443322   23578899999999999999999999999986544 456677888888888764 566778899


Q ss_pred             CCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCC-CceeEecCCCCcEE
Q 018784          166 DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIF  243 (350)
Q Consensus       166 ~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l  243 (350)
                      -|++||.||+|+++.+..-...+.|.++..+|++.+++.+ .++.+.+.........+ +..+.. ..++.|. ..|+.+
T Consensus       571 lDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyq-lhlheScVLSlKFa-~cGkwf  648 (705)
T KOG0639|consen  571 LDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQ-LHLHESCVLSLKFA-YCGKWF  648 (705)
T ss_pred             CccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcccee-ecccccEEEEEEec-ccCcee
Confidence            9999999999999988888888899999999999998776 56677777665432211 111111 1222333 358999


Q ss_pred             EEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          244 IAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       244 ~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                      ++.+.|+.+..|..--|..+...+ ...+|.++.+|.|.++++|||-|....||.+
T Consensus       649 vStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  649 VSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            999999999999988887776554 3557999999999999999999988888864

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.4e-22  Score=168.49  Aligned_cols=275  Identities=17%  Similarity=0.268  Sum_probs=189.1

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCce-----ee-ecc-CccCCeEEEEECCCCcE-EEEeeCCC
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW-----IG-TFE-GHKGAVWSCCLDANALF-SASGSADF   83 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~-----~~-~l~-gH~~~V~~v~~~~~~~~-l~s~s~Dg   83 (350)
                      ++||++.|++++|++   ||++|||++.|++|+||++.+.+.     ++ +++ +|.   +.|.|.||..- +++.-...
T Consensus        82 LKgH~~~vt~~~FsS---dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhp---T~V~FapDc~s~vv~~~~g~  155 (420)
T KOG2096|consen   82 LKGHKKEVTDVAFSS---DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHP---TRVVFAPDCKSVVVSVKRGN  155 (420)
T ss_pred             hhccCCceeeeEEcC---CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCc---eEEEECCCcceEEEEEccCC
Confidence            589999999999997   999999999999999999876422     11 122 233   56789999864 45556667


Q ss_pred             eEEEeeCCCCC---eeee--------e--eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEE
Q 018784           84 TAKLWDALTGD---EKHS--------F--EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRT  150 (350)
Q Consensus        84 ~v~vWd~~~~~---~~~~--------~--~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~  150 (350)
                      ++++|.....+   ..+.        +  .|.-.+..+....++.+|++++.|..|.+|++. ++.. ..+......-+.
T Consensus       156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L-~~idtnq~~n~~  233 (420)
T KOG2096|consen  156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLL-QSIDTNQSSNYD  233 (420)
T ss_pred             EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Ccee-eeeccccccccc
Confidence            89999764322   1111        1  144456677778899999999999999999997 3322 221111112233


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEEC---CCCc-----eeEeecC-CCCeEEEEEecCCcEEE-EEcCCcEEEEECCC---
Q 018784          151 VAWLHSDQTILSSCTDSGGVRLWDA---RSGK-----IVQTLET-KSPVTSAEVSRDGRYIT-TADGSSVKFWDANH---  217 (350)
Q Consensus       151 ~~~~~~~~~~~~s~~~dg~i~iwd~---~~~~-----~~~~~~~-~~~v~~~~~~~~~~~l~-~~~~~~i~vwd~~~---  217 (350)
                      .+. .++++++++++..-.|++|.+   +.|.     .+..++. .+.|..++|+++.+.++ .+.||.+|+||+.-   
T Consensus       234 aav-SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~  312 (420)
T KOG2096|consen  234 AAV-SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE  312 (420)
T ss_pred             eee-CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEe
Confidence            343 467888888888888999986   2332     2334443 56899999999987665 56799999999742   


Q ss_pred             ----cceeeeeecC-----CCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec-CCCcCEEEEEEcCCCCEEEE
Q 018784          218 ----FGLVKGYNMP-----CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK-GHHGPVHCVRFSPGGESYAS  287 (350)
Q Consensus       218 ----~~~~~~~~~~-----~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~-~h~~~v~~l~~sp~~~~las  287 (350)
                          ...++....+     ..+..+.++| .++.|+. +....+++|..++|+...++. .|+..|.+++|+++|++++|
T Consensus       313 ~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~lA~-s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~at  390 (420)
T KOG2096|consen  313 AGQDPKILKEGSAPLHAAGSEPVRLELSP-SGDSLAV-SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIAT  390 (420)
T ss_pred             cCCCchHhhcCCcchhhcCCCceEEEeCC-CCcEEEe-ecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEee
Confidence                1112222111     1233455555 3565554 345679999999988877664 79999999999999999999


Q ss_pred             ecCCCcEEEec
Q 018784          288 GSEDGTIRIWQ  298 (350)
Q Consensus       288 gs~Dg~v~vw~  298 (350)
                      ++. ..+++..
T Consensus       391 cGd-r~vrv~~  400 (420)
T KOG2096|consen  391 CGD-RYVRVIR  400 (420)
T ss_pred             ecc-eeeeeec
Confidence            874 5677764

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.92  E-value=5.3e-23  Score=185.70  Aligned_cols=270  Identities=20%  Similarity=0.332  Sum_probs=208.4

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH   97 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~   97 (350)
                      -|..++|.|   ||..|+.+. +..+.|||...|..+.+|+||.+.|++|+++.+|+.+|||+.|..|.+|... -+...
T Consensus        14 ci~d~afkP---DGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~L   88 (1081)
T KOG1538|consen   14 CINDIAFKP---DGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGIL   88 (1081)
T ss_pred             chheeEECC---CCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc-cccee
Confidence            789999987   998776654 3568999999999999999999999999999999999999999999999853 34556


Q ss_pred             eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCC
Q 018784           98 SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS  177 (350)
Q Consensus        98 ~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~  177 (350)
                      .+.|+..+.|+.|+|-.+.|++++-.. .-+|..+..   ..........+.+++|.. ++.+++-|..+|||.+-+ .+
T Consensus        89 kYSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK---~V~K~kss~R~~~CsWtn-DGqylalG~~nGTIsiRN-k~  162 (1081)
T KOG1538|consen   89 KYSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQK---SVSKHKSSSRIICCSWTN-DGQYLALGMFNGTISIRN-KN  162 (1081)
T ss_pred             eeccCCeeeEeecCchHHHhhhcchhh-ccccChhhh---hHHhhhhheeEEEeeecC-CCcEEEEeccCceEEeec-CC
Confidence            678999999999999999999987543 456765422   112223355688888875 566777788899999985 44


Q ss_pred             CceeEeec----CCCCeEEEEEecCC-----cEEE-EEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEec
Q 018784          178 GKIVQTLE----TKSPVTSAEVSRDG-----RYIT-TADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG  247 (350)
Q Consensus       178 ~~~~~~~~----~~~~v~~~~~~~~~-----~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~  247 (350)
                      +++...++    .+++|.+++|+|..     ..++ ..-+.++.++.+.....-+...+.-.+.+++.++ +|++++.|+
T Consensus       163 gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~-NGEy~LiGG  241 (1081)
T KOG1538|consen  163 GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFT-NGEYILLGG  241 (1081)
T ss_pred             CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheecc-CCcEEEEcc
Confidence            55444444    35789999999853     2343 3346788888776543333334444445555555 589999999


Q ss_pred             CCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          248 EDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       248 ~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      .|+.+++|- +.|-.+.++.....+||.+...|++++++.|+.||+|-.|++-
T Consensus       242 sdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  242 SDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             CCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            999999995 5677777777778899999999999999999999999999864

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.6e-23  Score=180.95  Aligned_cols=232  Identities=25%  Similarity=0.366  Sum_probs=179.8

Q ss_pred             ccEEEEEeCCCCeeEeeCCCC---ceee------------------eccCccCCeEEEEECCC-CcEEEEeeCCCeEEEe
Q 018784           31 GFFLVSASKDSSPMLRNGETG---DWIG------------------TFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLW   88 (350)
Q Consensus        31 g~~lasgs~d~~v~iw~~~~~---~~~~------------------~l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~vW   88 (350)
                      |.|+|.|+.|..|.|||+.-.   .+..                  ..++|+..|.+++|... ...|||||.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            679999999999999996421   1111                  23479999998888765 4589999999999999


Q ss_pred             eCCCCCeeeeee-ccccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeC
Q 018784           89 DALTGDEKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD  166 (350)
Q Consensus        89 d~~~~~~~~~~~-h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~  166 (350)
                      |+.++++..++. |.+.|.++.|+| ....|++|+.|++|++.|++.+....... ...+.|-.++|.+.....++++.+
T Consensus       272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~td  350 (463)
T KOG0270|consen  272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVSTD  350 (463)
T ss_pred             EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEEecC
Confidence            999999999887 788999999998 46789999999999999998644333222 245678999999888888889999


Q ss_pred             CCeEEEEECCCC-ceeEeecC-CCCeEEEEEecCCc-EE-EEEcCCcEEEEECCCcc--eeeeeecCCC-CceeEecCCC
Q 018784          167 SGGVRLWDARSG-KIVQTLET-KSPVTSAEVSRDGR-YI-TTADGSSVKFWDANHFG--LVKGYNMPCN-TESASLEPKL  239 (350)
Q Consensus       167 dg~i~iwd~~~~-~~~~~~~~-~~~v~~~~~~~~~~-~l-~~~~~~~i~vwd~~~~~--~~~~~~~~~~-~~~~~~~~~~  239 (350)
                      ||+|+-+|+|+. +++.+++. ..+|..+++++... ++ +++.++.|++|++....  .++...+... ..+..+.+..
T Consensus       351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~  430 (463)
T KOG0270|consen  351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDV  430 (463)
T ss_pred             CceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCc
Confidence            999999999975 88988885 46899999987543 33 44568999999975432  3333222221 3344555666


Q ss_pred             CcEEEEecCCCeEEEEEcccCeeE
Q 018784          240 GNIFIAGGEDMWVHVFDFHTGEQI  263 (350)
Q Consensus       240 ~~~l~sg~~d~~i~v~d~~~~~~~  263 (350)
                      ...++.|+..+.+++||+.+...+
T Consensus       431 a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  431 AFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             ceEEEecCccceEEEeecccChhH
Confidence            788999999999999999876554

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=2.5e-22  Score=185.43  Aligned_cols=286  Identities=20%  Similarity=0.257  Sum_probs=223.6

Q ss_pred             cceeEeeccC-CceeEEEecccCCCcc-EEEEEeCCCCeeEeeCCCCceeeecc-CccCCeEEEEECCCCcEEEEeeCCC
Q 018784            7 AVPLVCHGHS-RPVVDLFYSPITPDGF-FLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADF   83 (350)
Q Consensus         7 ~~~~~~~gH~-~~v~~~~~~~~s~dg~-~lasgs~d~~v~iw~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~l~s~s~Dg   83 (350)
                      +.=+.-.-|. ++|+.+.|.-   ||. +||+|+..|.+-+||++..+....+. .|.++|....|-+....++|++.|.
T Consensus       234 dkil~sFk~d~g~VtslSFrt---DG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~Dn  310 (910)
T KOG1539|consen  234 DKILMSFKQDWGRVTSLSFRT---DGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADN  310 (910)
T ss_pred             CcEEEEEEccccceeEEEecc---CCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCC
Confidence            3333334565 8999999974   774 67888888999999999888877665 7888888888888888888888888


Q ss_pred             eEEEeeCCCCCe--------------------------------------------------------------------
Q 018784           84 TAKLWDALTGDE--------------------------------------------------------------------   95 (350)
Q Consensus        84 ~v~vWd~~~~~~--------------------------------------------------------------------   95 (350)
                      ++++|=..++..                                                                    
T Consensus       311 Slk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~  390 (910)
T KOG1539|consen  311 SLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFST  390 (910)
T ss_pred             ceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccch
Confidence            888883321100                                                                    


Q ss_pred             ---------------------------------------------eeeeecc------ccEeEEEEcCCCCeEEEeeCCC
Q 018784           96 ---------------------------------------------KHSFEHK------HIVRACAFSEDTHLLLTGGFEK  124 (350)
Q Consensus        96 ---------------------------------------------~~~~~h~------~~V~~~~~~~~~~~l~sg~~d~  124 (350)
                                                                   .+.+.++      ..+.+++.++-|++.+.|...|
T Consensus       391 ~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G  470 (910)
T KOG1539|consen  391 EKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKG  470 (910)
T ss_pred             hhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCC
Confidence                                                         0111122      3578889999999999999999


Q ss_pred             eEEEEECCCCCCCCee--ecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEE
Q 018784          125 ILRIFDLNRPDAPPRE--VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI  202 (350)
Q Consensus       125 ~v~vwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l  202 (350)
                      +|.+|++.++-.....  ...|.+.|+.++.. .-++.+++++.+|.+++||......+..+....++..+..+....++
T Consensus       471 ~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D-~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~  549 (910)
T KOG1539|consen  471 TIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVD-GTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLL  549 (910)
T ss_pred             eEEEEEcccCeeecccccCccccCceeEEEec-CCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhh
Confidence            9999999765433333  35788999999864 45667888999999999999998888888888888888777665555


Q ss_pred             EE-EcCCcEEEEECCCcceeeeeecCCCCce-eEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcC
Q 018784          203 TT-ADGSSVKFWDANHFGLVKGYNMPCNTES-ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSP  280 (350)
Q Consensus       203 ~~-~~~~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp  280 (350)
                      +. .++-.|+++|..+.+.++.+..+.+... ..|+ ++++.+++++.|++|++||+-++.++-.+. -..+..++.|+|
T Consensus       550 a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS-~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SP  627 (910)
T KOG1539|consen  550 AIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS-PDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSP  627 (910)
T ss_pred             hhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC-CCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECC
Confidence            54 4566899999999999988886665544 4555 479999999999999999999999886553 356789999999


Q ss_pred             CCCEEEEecCC-CcEEEec
Q 018784          281 GGESYASGSED-GTIRIWQ  298 (350)
Q Consensus       281 ~~~~lasgs~D-g~v~vw~  298 (350)
                      +|.+||+...| .-|++|-
T Consensus       628 ngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  628 NGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             CCCEEEEEEecCceEEEEE
Confidence            99999999998 6799995

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=2.5e-23  Score=180.26  Aligned_cols=206  Identities=20%  Similarity=0.303  Sum_probs=168.2

Q ss_pred             eeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC-------ceeeeccCccCCeEEEEECCC-CcEEEEee
Q 018784            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDAN-ALFSASGS   80 (350)
Q Consensus         9 ~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~-------~~~~~l~gH~~~V~~v~~~~~-~~~l~s~s   80 (350)
                      .+.++||++.-++++|++..+.  .|++|+.|+++.+||+...       .+...+.+|+..|.-++|++. ..+|++.+
T Consensus       170 dl~L~gH~~eg~glsWn~~~~g--~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~  247 (422)
T KOG0264|consen  170 DLRLKGHEKEGYGLSWNRQQEG--TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG  247 (422)
T ss_pred             ceEEEeecccccccccccccce--eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec
Confidence            3467999998889999986543  7899999999999997532       235678999999999999874 56889999


Q ss_pred             CCCeEEEeeCCC--CCeeee-eeccccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCC
Q 018784           81 ADFTAKLWDALT--GDEKHS-FEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS  156 (350)
Q Consensus        81 ~Dg~v~vWd~~~--~~~~~~-~~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  156 (350)
                      .|+.+.|||+.+  .+.... -.|...|.|++|+| ++.+|||||.|++|++||+++...+......|...|..+.|+|.
T Consensus       248 dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh  327 (422)
T KOG0264|consen  248 DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPH  327 (422)
T ss_pred             CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCC
Confidence            999999999984  333333 36899999999999 56778999999999999999888888888899999999999999


Q ss_pred             CCcEEEEEeCCCeEEEEECCCC-cee------------Eee--cCCCCeEEEEEecCCcEEEE--EcCCcEEEEECC
Q 018784          157 DQTILSSCTDSGGVRLWDARSG-KIV------------QTL--ETKSPVTSAEVSRDGRYITT--ADGSSVKFWDAN  216 (350)
Q Consensus       157 ~~~~~~s~~~dg~i~iwd~~~~-~~~------------~~~--~~~~~v~~~~~~~~~~~l~~--~~~~~i~vwd~~  216 (350)
                      ...++++++.|+.+.+||+..- +..            ..+  .+...|....|+|+.-++.+  ++|+.+.||.+.
T Consensus       328 ~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  328 NETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            9999999999999999998642 110            111  12356888899998876543  468999999875

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=2.1e-22  Score=183.09  Aligned_cols=306  Identities=19%  Similarity=0.241  Sum_probs=223.8

Q ss_pred             eeEEEecccCCCccEEEEEeCCCCeeEeeCCCCce---eeeccCccCCeEEEEECC------------CCcEEEEeeCCC
Q 018784           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW---IGTFEGHKGAVWSCCLDA------------NALFSASGSADF   83 (350)
Q Consensus        19 v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~---~~~l~gH~~~V~~v~~~~------------~~~~l~s~s~Dg   83 (350)
                      -.++.|++   .-.-|..--+|..+.|||+.+-..   ...+--|+..||.+..-|            .+ -|+|+|.|+
T Consensus       327 ~IA~~Fde---t~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD~  402 (1080)
T KOG1408|consen  327 AIACQFDE---TTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG-CFTTCSSDG  402 (1080)
T ss_pred             eeEEEecC---CCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCcc-ceeEecCCC
Confidence            34666776   334677888999999999865322   235556999998875432            22 468999999


Q ss_pred             eEEEeeCCCCCe--e-e--ee---------------------------------eccccEeEEEEcCCCCeEEEeeCCCe
Q 018784           84 TAKLWDALTGDE--K-H--SF---------------------------------EHKHIVRACAFSEDTHLLLTGGFEKI  125 (350)
Q Consensus        84 ~v~vWd~~~~~~--~-~--~~---------------------------------~h~~~V~~~~~~~~~~~l~sg~~d~~  125 (350)
                      +||+||+..+..  . +  .+                                 ..+..+++++.+|++++||+|..-|.
T Consensus       403 TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gn  482 (1080)
T KOG1408|consen  403 TIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGN  482 (1080)
T ss_pred             cEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCc
Confidence            999999865211  0 0  00                                 12346899999999999999999999


Q ss_pred             EEEEECCCCCCCCeeecCCCCcEEEEEEeCC--CCcEEEEEeCCCeEEEEECCC-CceeEeecC-CCCeEEEEEecCC--
Q 018784          126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHS--DQTILSSCTDSGGVRLWDARS-GKIVQTLET-KSPVTSAEVSRDG--  199 (350)
Q Consensus       126 v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~s~~~dg~i~iwd~~~-~~~~~~~~~-~~~v~~~~~~~~~--  199 (350)
                      ++||++..-... .....|...|.++.|+.+  ..+++++++.|+-|.++|+.. -.++.++.. ...|+++.|..+|  
T Consensus       483 lrVy~Lq~l~~~-~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln  561 (1080)
T KOG1408|consen  483 LRVYDLQELEYT-CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLN  561 (1080)
T ss_pred             eEEEEehhhhhh-hheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCc
Confidence            999999654332 234678899999999866  467899999999999999954 456677765 5689999998766  


Q ss_pred             -cEEEEEcCCcEEEEECCCcceeeeeec------CCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecC---C
Q 018784          200 -RYITTADGSSVKFWDANHFGLVKGYNM------PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG---H  269 (350)
Q Consensus       200 -~~l~~~~~~~i~vwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~---h  269 (350)
                       +++.++.|+.|.+--.++....+.+.-      ....+...+.| .-++++++++|+.|+|||+.+|++...+++   |
T Consensus       562 ~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~  640 (1080)
T KOG1408|consen  562 RKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH  640 (1080)
T ss_pred             eEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-CcceEEEEecccceEEEeccccceeeeecccccC
Confidence             567777776654322221111111111      11122333444 357899999999999999999999988864   6


Q ss_pred             CcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeee
Q 018784          270 HGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKI  330 (350)
Q Consensus       270 ~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  330 (350)
                      .+..--+..-|.|-|+|+.+.|.++.++|....+......||...++|....+.=.+.-.+
T Consensus       641 eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISv  701 (1080)
T KOG1408|consen  641 EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISV  701 (1080)
T ss_pred             CCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheee
Confidence            6778889999999999999999999999999999888889999999887666654444433

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.8e-22  Score=174.03  Aligned_cols=278  Identities=15%  Similarity=0.233  Sum_probs=207.2

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCCCeeEeeCC--CCceeeeccCccCCeEEEEECCCCc-EEEEeeCCCeEEEeeCCC
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE--TGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWDALT   92 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~--~~~~~~~l~gH~~~V~~v~~~~~~~-~l~s~s~Dg~v~vWd~~~   92 (350)
                      .++|++|.|+|..|   +|++|+.|++++||.+.  +...+..+.=-.-+|.+++|.|+|. .++++|.-.-...||+.+
T Consensus       213 ~~~I~sv~FHp~~p---lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~  289 (514)
T KOG2055|consen  213 HGGITSVQFHPTAP---LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET  289 (514)
T ss_pred             cCCceEEEecCCCc---eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence            45899999998555   99999999999998864  3445555554557899999999998 899999999999999988


Q ss_pred             CCeeee---eec-cccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784           93 GDEKHS---FEH-KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (350)
Q Consensus        93 ~~~~~~---~~h-~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg  168 (350)
                      .+....   ..+ ...+.....+|++++|+..|..|.|.+--..+.+.....  .-.+.+..++|+.++ +.++.++.+|
T Consensus       290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~--KieG~v~~~~fsSds-k~l~~~~~~G  366 (514)
T KOG2055|consen  290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF--KIEGVVSDFTFSSDS-KELLASGGTG  366 (514)
T ss_pred             cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee--eeccEEeeEEEecCC-cEEEEEcCCc
Confidence            763322   122 235667778999999999999999999877655443322  236789999999655 5555556679


Q ss_pred             eEEEEECCCCceeEeecCCCCe--EEEEEecCCcEEEEEcC-CcEEEEECCC------cceeeeee-cCCCCceeEecCC
Q 018784          169 GVRLWDARSGKIVQTLETKSPV--TSAEVSRDGRYITTADG-SSVKFWDANH------FGLVKGYN-MPCNTESASLEPK  238 (350)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-~~i~vwd~~~------~~~~~~~~-~~~~~~~~~~~~~  238 (350)
                      .|.+||+++..+++.+...+.+  ++++.++++.|++++++ |.|.|||..+      .++++.+. +......+.|++ 
T Consensus       367 eV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~-  445 (514)
T KOG2055|consen  367 EVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH-  445 (514)
T ss_pred             eEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc-
Confidence            9999999999999988766554  56777899999998875 7899999653      23333221 122234455655 


Q ss_pred             CCcEEEEecC--CCeEEEEEcccCeeEEeec---CCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          239 LGNIFIAGGE--DMWVHVFDFHTGEQIGCNK---GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       239 ~~~~l~sg~~--d~~i~v~d~~~~~~~~~~~---~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      +.++|+.+|.  +..+++-.+.+......+.   .--+.|+||+|||.+.+||.|-.+|.|.+|.+.
T Consensus       446 d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  446 DAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             chhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            5788887775  5568887776655443332   233568999999999999999999999999863

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=2.2e-23  Score=167.35  Aligned_cols=204  Identities=24%  Similarity=0.388  Sum_probs=162.5

Q ss_pred             EeeccCCceeEEEec-ccCCCccEEEEEeCCCCeeEeeCCCCceee--eccCccCCeEEEEECCC--CcEEEEeeCCCeE
Q 018784           11 VCHGHSRPVVDLFYS-PITPDGFFLVSASKDSSPMLRNGETGDWIG--TFEGHKGAVWSCCLDAN--ALFSASGSADFTA   85 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~-~~s~dg~~lasgs~d~~v~iw~~~~~~~~~--~l~gH~~~V~~v~~~~~--~~~l~s~s~Dg~v   85 (350)
                      .++||.+||+.++|- |  .-|.+||++|.|++|.||.-+.|++.+  ....|+.+|++++|.|.  |.+||.++.||.|
T Consensus        51 ~L~Gh~GPVwqv~wahP--k~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~v  128 (299)
T KOG1332|consen   51 ELTGHSGPVWKVAWAHP--KFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKV  128 (299)
T ss_pred             EecCCCCCeeEEeeccc--ccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcE
Confidence            368999999999984 3  258899999999999999999887754  55689999999999875  6799999999999


Q ss_pred             EEeeCCCC-C---eeeeeeccccEeEEEEcCC---C-----------CeEEEeeCCCeEEEEECCCCCCCCe-eecCCCC
Q 018784           86 KLWDALTG-D---EKHSFEHKHIVRACAFSED---T-----------HLLLTGGFEKILRIFDLNRPDAPPR-EVGNSSG  146 (350)
Q Consensus        86 ~vWd~~~~-~---~~~~~~h~~~V~~~~~~~~---~-----------~~l~sg~~d~~v~vwd~~~~~~~~~-~~~~~~~  146 (350)
                      .|.+.... .   .+....|+-.|+++.|.|-   |           +.|++|+-|..|+||+.....-... .+..|..
T Consensus       129 svl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~d  208 (299)
T KOG1332|consen  129 SVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKD  208 (299)
T ss_pred             EEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcch
Confidence            99987544 1   2334468889999999886   4           5699999999999999876543333 3678999


Q ss_pred             cEEEEEEeCCC---CcEEEEEeCCCeEEEEECCCCceeE--ee--cCCCCeEEEEEecCCcEEEEE-cCCcEEEEECC
Q 018784          147 SIRTVAWLHSD---QTILSSCTDSGGVRLWDARSGKIVQ--TL--ETKSPVTSAEVSRDGRYITTA-DGSSVKFWDAN  216 (350)
Q Consensus       147 ~v~~~~~~~~~---~~~~~s~~~dg~i~iwd~~~~~~~~--~~--~~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~  216 (350)
                      .|+.++|.|.-   ...+++|+.||+|.||-.+......  ++  ..+..+..+.|+..|.+|+.+ .++.|.+|--.
T Consensus       209 wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  209 WVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             hhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            99999999864   4579999999999999876321111  11  135678999999999999766 46789999643

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=7e-22  Score=184.33  Aligned_cols=272  Identities=17%  Similarity=0.246  Sum_probs=211.6

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC-ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~-~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~   92 (350)
                      +|+..-+.|+|.|   +|.+|.+++.|+.|++|+..+- +...++.-|...|.+++.  ....|++|+.+++|.++....
T Consensus        11 aht~G~t~i~~d~---~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps   85 (933)
T KOG1274|consen   11 AHTGGLTLICYDP---DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPS   85 (933)
T ss_pred             hccCceEEEEEcC---CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCC
Confidence            7999999999886   9999999999999999996554 444455557788877765  445889999999999999988


Q ss_pred             CCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEE
Q 018784           93 GDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (350)
Q Consensus        93 ~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~  171 (350)
                      ++.-..+ .-+-+++.++|+-+|+++|.||.|-.|++-++.+.... .....|.++|.++.|.| .+.++++.+-||+|+
T Consensus        86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~-~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~  163 (933)
T KOG1274|consen   86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE-KVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQ  163 (933)
T ss_pred             CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh-eeecccCCceeeeeEcC-CCCEEEEEecCceEE
Confidence            7765444 34557899999999999999999999999999876554 34467899999999875 556778888899999


Q ss_pred             EEECCCCceeEeecC---------CCCeEEEEEecC-CcEEEEEcCCcEEEEECCCcceeeeeecC---CCCceeEecCC
Q 018784          172 LWDARSGKIVQTLET---------KSPVTSAEVSRD-GRYITTADGSSVKFWDANHFGLVKGYNMP---CNTESASLEPK  238 (350)
Q Consensus       172 iwd~~~~~~~~~~~~---------~~~v~~~~~~~~-~~~l~~~~~~~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~  238 (350)
                      +||+.++.+..++..         ...+..++|+|+ |++++...++.|++|+..++.....+...   .....+.+.|.
T Consensus       164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn  243 (933)
T KOG1274|consen  164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN  243 (933)
T ss_pred             EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC
Confidence            999999987766643         234677899998 67888888999999999887765555432   22445566764


Q ss_pred             CCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEe
Q 018784          239 LGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW  297 (350)
Q Consensus       239 ~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw  297 (350)
                       |.|||+++.||.|.|||..+-+.    ......|.+++|.|+...+-.-..-|...+|
T Consensus       244 -G~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~  297 (933)
T KOG1274|consen  244 -GKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS  297 (933)
T ss_pred             -CcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence             99999999999999999987111    2234579999999998765443334444444

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=2.1e-24  Score=196.27  Aligned_cols=194  Identities=22%  Similarity=0.404  Sum_probs=170.5

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      +.||+.+|-++.|++   +-.+|+.|+.||+|++||++..+.+++|.||...+..|.|+|-+.++|+|+.|+.+++||..
T Consensus        66 ~~~hespIeSl~f~~---~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R  142 (825)
T KOG0267|consen   66 LTGHESPIESLTFDT---SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR  142 (825)
T ss_pred             eeccCCcceeeecCc---chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhh
Confidence            379999999999996   77899999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784           92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (350)
Q Consensus        92 ~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i  170 (350)
                      ...+.+++ .|...|..+.|+|+|.++++|+.|.+++|||+..++.. ..+..|.+.+..+.| ++...++++|+.|+++
T Consensus       143 k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~-~ef~~~e~~v~sle~-hp~e~Lla~Gs~d~tv  220 (825)
T KOG0267|consen  143 KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS-KEFKSHEGKVQSLEF-HPLEVLLAPGSSDRTV  220 (825)
T ss_pred             ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccc-ccccccccccccccc-CchhhhhccCCCCcee
Confidence            66666666 48889999999999999999999999999999765543 344668888999985 5677889999999999


Q ss_pred             EEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEEcCCcE
Q 018784          171 RLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSSV  210 (350)
Q Consensus       171 ~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~i  210 (350)
                      ++||+++.+.+..... ...+.+..|+|+++.+.++..-.+
T Consensus       221 ~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl  261 (825)
T KOG0267|consen  221 RFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISL  261 (825)
T ss_pred             eeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhh
Confidence            9999999888877664 468999999999998887754333

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=5.1e-22  Score=177.38  Aligned_cols=281  Identities=21%  Similarity=0.265  Sum_probs=202.3

Q ss_pred             eeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCc--EEEEeeCCCeEE
Q 018784            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL--FSASGSADFTAK   86 (350)
Q Consensus         9 ~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~--~l~s~s~Dg~v~   86 (350)
                      .++++||++.|.++...|   .|..||+||.||++|||.+.+|+|++++. ..+.|.+|+|+|.+.  +||.+ ....+-
T Consensus       393 ~lvyrGHtg~Vr~iSvdp---~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA-~~~~~~  467 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDP---SGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA-VGECVL  467 (733)
T ss_pred             eeeEeccCCeEEEEEecC---CcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEE-ecCceE
Confidence            456799999999997775   89999999999999999999999998765 335799999988654  34433 222244


Q ss_pred             EeeCCCC---------------------------------C-----eeeeeeccccEeEEEEcCCCCeEEEeeC---CCe
Q 018784           87 LWDALTG---------------------------------D-----EKHSFEHKHIVRACAFSEDTHLLLTGGF---EKI  125 (350)
Q Consensus        87 vWd~~~~---------------------------------~-----~~~~~~h~~~V~~~~~~~~~~~l~sg~~---d~~  125 (350)
                      |-+..-|                                 +     ....+.|...|+.+.||..|.+|++...   ...
T Consensus       468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~  547 (733)
T KOG0650|consen  468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS  547 (733)
T ss_pred             EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence            4332111                                 0     1123458889999999999999998754   467


Q ss_pred             EEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCc-EEE
Q 018784          126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGR-YIT  203 (350)
Q Consensus       126 v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~-~l~  203 (350)
                      |.|.++.+.... .-+....+.+..+.|.|....+++ ++. ..|++||+-.++.+..+... ..+.+++++|.|. +++
T Consensus       548 VliHQLSK~~sQ-~PF~kskG~vq~v~FHPs~p~lfV-aTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~  624 (733)
T KOG0650|consen  548 VLIHQLSKRKSQ-SPFRKSKGLVQRVKFHPSKPYLFV-ATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL  624 (733)
T ss_pred             EEEEeccccccc-CchhhcCCceeEEEecCCCceEEE-Eec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence            889998754322 223345678999998766555554 444 58999999887776666554 4577899999885 455


Q ss_pred             EEcCCcEEEEECCCc-ceeeeeecCCC-CceeEecCCCCcEEEEecCCCeEEEEEcc------cC---eeEEeecCCCcC
Q 018784          204 TADGSSVKFWDANHF-GLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFH------TG---EQIGCNKGHHGP  272 (350)
Q Consensus       204 ~~~~~~i~vwd~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~------~~---~~~~~~~~h~~~  272 (350)
                      ++.++.+..+|+.-. ++.+++..+.. ...+.++.. -.+|++|+.|+++.||.-.      ..   -++..+.+|...
T Consensus       625 gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r-yPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~  703 (733)
T KOG0650|consen  625 GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR-YPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT  703 (733)
T ss_pred             ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccc-cceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceee
Confidence            666889999998543 34444443332 334455543 3689999999999988521      11   134567899876


Q ss_pred             ----EEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          273 ----VHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       273 ----v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                          |..+.|+|...+|+|++.||+|++|.
T Consensus       704 ~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  704 NDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             cccceEeecccCCCceEEecCCCceEEeeC
Confidence                99999999999999999999999993

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=2.4e-23  Score=184.76  Aligned_cols=258  Identities=21%  Similarity=0.266  Sum_probs=181.6

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCC--------CCceeeeccCccCCeEEEEECCCCcEEEEeeCCC
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE--------TGDWIGTFEGHKGAVWSCCLDANALFSASGSADF   83 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~--------~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg   83 (350)
                      ++-|.+-|+++.|.|.+|   .|++++.|+++++|+++        ..+++.+|.+|.++|.|+++..++..+.|||.||
T Consensus       290 l~s~~d~ir~l~~~~sep---~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg  366 (577)
T KOG0642|consen  290 LRSHDDCIRALAFHPSEP---VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG  366 (577)
T ss_pred             eecchhhhhhhhcCCCCC---eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence            478999999999999777   59999999999999983        2467889999999999999999999999999999


Q ss_pred             eEEEeeCCCCC------e-----eeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEE
Q 018784           84 TAKLWDALTGD------E-----KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVA  152 (350)
Q Consensus        84 ~v~vWd~~~~~------~-----~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~  152 (350)
                      +|+.|++....      .     -..+.|...|+.+++|+....|++++.||+++.|+...............+...++.
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd  446 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVD  446 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEe
Confidence            99999654221      0     112369999999999999999999999999999987644331122222334455666


Q ss_pred             EeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCce
Q 018784          153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTES  232 (350)
Q Consensus       153 ~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~  232 (350)
                      +......+.++...-+.--+.++..+..+..+...                  .....+.+              .....
T Consensus       447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~------------------~~~~~~~~--------------~~in~  494 (577)
T KOG0642|consen  447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESS------------------ASPGPRRY--------------PQINK  494 (577)
T ss_pred             eccchhHhhhhhcccccccchhhhhhhheeecccc------------------CCCccccc--------------Cccce
Confidence            55443333332222122222222222211111110                  00000000              00111


Q ss_pred             eEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784          233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       233 ~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~  305 (350)
                      +... +...+.+++..|+.|+++|..++..++....|...++++++-|+|.+|++|+.|+.|++|.+......
T Consensus       495 vVs~-~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~  566 (577)
T KOG0642|consen  495 VVSH-PTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV  566 (577)
T ss_pred             EEec-CCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence            1111 23467788889999999999999999999999999999999999999999999999999998655443

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.91  E-value=5e-22  Score=165.54  Aligned_cols=263  Identities=23%  Similarity=0.322  Sum_probs=195.4

Q ss_pred             cCCCccEEEEEeCCCCeeEeeCCC-----C--ce-e----eeccCc-cCCeEEEEE-------CCCCcEEEEeeCCCeEE
Q 018784           27 ITPDGFFLVSASKDSSPMLRNGET-----G--DW-I----GTFEGH-KGAVWSCCL-------DANALFSASGSADFTAK   86 (350)
Q Consensus        27 ~s~dg~~lasgs~d~~v~iw~~~~-----~--~~-~----~~l~gH-~~~V~~v~~-------~~~~~~l~s~s~Dg~v~   86 (350)
                      ++|||..+++-+.|..+++|++-.     .  .. .    .+++-- ...|+..+|       .|+..++|+.+.|.-|.
T Consensus        57 WSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh  136 (406)
T KOG2919|consen   57 WSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIH  136 (406)
T ss_pred             eCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCcee
Confidence            567999999999999999999531     1  11 1    111111 134555555       36778999999999999


Q ss_pred             EeeCCCCCeeeee---ecccc---EeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCe--e-----ecCCCCcEEEEEE
Q 018784           87 LWDALTGDEKHSF---EHKHI---VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR--E-----VGNSSGSIRTVAW  153 (350)
Q Consensus        87 vWd~~~~~~~~~~---~h~~~---V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~--~-----~~~~~~~v~~~~~  153 (350)
                      +||..+++.+.++   .|...   -.+++|+|||.+|++ +..+.|++||+..+.....  .     .....+.+.+++|
T Consensus       137 ~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~  215 (406)
T KOG2919|consen  137 LWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAF  215 (406)
T ss_pred             eeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhcccccccceeeeeec
Confidence            9999999887765   45443   458999999999885 4578999999965432211  1     1223667888899


Q ss_pred             eCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEEc--CCcEEEEECCCccee-eeeecCC-
Q 018784          154 LHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTAD--GSSVKFWDANHFGLV-KGYNMPC-  228 (350)
Q Consensus       154 ~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~~~i~vwd~~~~~~~-~~~~~~~-  228 (350)
                      +|.+..+++.++.-..+-|+.-..++++..+.. .+.|+.++|.++|+.|.++.  +..|..||+|..+.+ ..+.-+. 
T Consensus       216 sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~  295 (406)
T KOG2919|consen  216 SPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVG  295 (406)
T ss_pred             cCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhcc
Confidence            998888999998888888877667777777664 57899999999998877664  568999999976532 2222111 


Q ss_pred             --C-CceeEecCCCCcEEEEecCCCeEEEEEccc-CeeEEeecCCCcCEEEEEEcCCCCEEEEecCC
Q 018784          229 --N-TESASLEPKLGNIFIAGGEDMWVHVFDFHT-GEQIGCNKGHHGPVHCVRFSPGGESYASGSED  291 (350)
Q Consensus       229 --~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~-~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~D  291 (350)
                        + .....+.+ .+++|++|+.||.|++||+++ |+.+..+..|...++.++++|--+++|++|-.
T Consensus       296 ~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  296 DTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             CccceEEEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence              1 22233333 589999999999999999998 78788888899999999999999989887754

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.5e-21  Score=175.23  Aligned_cols=278  Identities=17%  Similarity=0.206  Sum_probs=217.2

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCce-eeeccCccC-CeEEEEECCCCcEEEEeeCCCeEEEeeCCCC
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW-IGTFEGHKG-AVWSCCLDANALFSASGSADFTAKLWDALTG   93 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~-~~~l~gH~~-~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~   93 (350)
                      -.+|.+++|+.   .++.||.+-.||.|.||++...-+ ...+.||.+ +|.+++|. ++..|+|.+.+|.|.-||+.+.
T Consensus        25 Ps~I~slA~s~---kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~l  100 (691)
T KOG2048|consen   25 PSEIVSLAYSH---KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTL  100 (691)
T ss_pred             ccceEEEEEec---cCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccC
Confidence            35799999986   666899999999999999877543 457788764 69999999 5556678899999999999999


Q ss_pred             Ceeeeee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCe-eecCCCCcEEEEEEeCCCCcEEEEEeCCCeEE
Q 018784           94 DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR-EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (350)
Q Consensus        94 ~~~~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~  171 (350)
                      +++..+. ..+.+++++.+|.+..++.|+.||.+..++......... .+...++.+.++.|.+ +...+++|+.||.|+
T Consensus       101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Ir  179 (691)
T KOG2048|consen  101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIR  179 (691)
T ss_pred             ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEE
Confidence            9888775 456899999999999999999999888888764433222 2344568999999975 455577889999999


Q ss_pred             EEECCCCceeEeecC---------CCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcE
Q 018784          172 LWDARSGKIVQTLET---------KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNI  242 (350)
Q Consensus       172 iwd~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (350)
                      +||..++..+.....         ..-+.++.+-.++.++++.+.|.|.+||...+.+++.+..+.....+....+++++
T Consensus       180 iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~  259 (691)
T KOG2048|consen  180 IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDR  259 (691)
T ss_pred             EEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCe
Confidence            999999877662221         12367777888888777777899999999998888877766555545445556789


Q ss_pred             EEEecCCCeEEEEEcccCee----EEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          243 FIAGGEDMWVHVFDFHTGEQ----IGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       243 l~sg~~d~~i~v~d~~~~~~----~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      +.+++-|+.|.-|...+...    ......|...|.+++..++  .+.+|+.|..+.+--..
T Consensus       260 vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~  319 (691)
T KOG2048|consen  260 VFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSR  319 (691)
T ss_pred             EEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEcccc
Confidence            99999999998888766533    2234578888999999877  89999999988876543

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=5.6e-22  Score=164.95  Aligned_cols=212  Identities=23%  Similarity=0.349  Sum_probs=152.2

Q ss_pred             eeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCee--eeee---ccccEeEEEEcCCCCeE-EEeeCCCeEE
Q 018784           54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK--HSFE---HKHIVRACAFSEDTHLL-LTGGFEKILR  127 (350)
Q Consensus        54 ~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~--~~~~---h~~~V~~~~~~~~~~~l-~sg~~d~~v~  127 (350)
                      +.+|+||.+.|.+++|+.||+.|||++.|++||+|++.....+  ..+.   .-+..+.+.|+||..-+ ++.-...+++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            3478999999999999999999999999999999998643211  1110   11235778999998755 4555677899


Q ss_pred             EEECCCCCC---CCe--------eecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEE
Q 018784          128 IFDLNRPDA---PPR--------EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEV  195 (350)
Q Consensus       128 vwd~~~~~~---~~~--------~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~  195 (350)
                      +|.+.+.+.   +..        ....|...+..+.. ..+..++++|+.|.+|.+|+++ |+.+..+..+ ..-...++
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi-A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav  236 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI-AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV  236 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEee-cCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence            998754321   110        11223344555543 3567889999999999999999 9988888764 34556789


Q ss_pred             ecCCcEEEEEc-CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEE
Q 018784          196 SRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVH  274 (350)
Q Consensus       196 ~~~~~~l~~~~-~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~  274 (350)
                      +|+|++++++. --.|++|.+-     .                        +.||++     .+-..+..++||+..|.
T Consensus       237 SP~GRFia~~gFTpDVkVwE~~-----f------------------------~kdG~f-----qev~rvf~LkGH~saV~  282 (420)
T KOG2096|consen  237 SPDGRFIAVSGFTPDVKVWEPI-----F------------------------TKDGTF-----QEVKRVFSLKGHQSAVL  282 (420)
T ss_pred             CCCCcEEEEecCCCCceEEEEE-----e------------------------ccCcch-----hhhhhhheeccchhhee
Confidence            99999987654 4468888641     0                        011211     11123446789999999


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784          275 CVRFSPGGESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       275 ~l~~sp~~~~lasgs~Dg~v~vw~~~~  301 (350)
                      .++|+|+.+.++|.|.||.++|||++-
T Consensus       283 ~~aFsn~S~r~vtvSkDG~wriwdtdV  309 (420)
T KOG2096|consen  283 AAAFSNSSTRAVTVSKDGKWRIWDTDV  309 (420)
T ss_pred             eeeeCCCcceeEEEecCCcEEEeeccc
Confidence            999999999999999999999999863

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=2.6e-22  Score=168.32  Aligned_cols=268  Identities=15%  Similarity=0.188  Sum_probs=203.2

Q ss_pred             cEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECC--CCcEEEEeeCCCeEEEeeCCCCCeeeee---ecc-ccE
Q 018784           32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA--NALFSASGSADFTAKLWDALTGDEKHSF---EHK-HIV  105 (350)
Q Consensus        32 ~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~--~~~~l~s~s~Dg~v~vWd~~~~~~~~~~---~h~-~~V  105 (350)
                      ..+|++-+.++++|||..+++.+..+++|...+..+.|..  .+..+.|++.||+||+||+........+   .++ .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            3588888899999999999999999999999999998865  5678899999999999999776644433   233 466


Q ss_pred             eEEEEcCCCCeEEEee----CCCeEEEEECCCCCC-CCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC--
Q 018784          106 RACAFSEDTHLLLTGG----FEKILRIFDLNRPDA-PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG--  178 (350)
Q Consensus       106 ~~~~~~~~~~~l~sg~----~d~~v~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~--  178 (350)
                      .+++....++++++|.    .|-.|.+||++..++ .......|..-|+++.|.|.+..++++|+-||-|.++|++..  
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E  200 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE  200 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence            7888887888888874    467899999987666 344557789999999999999999999999999999999754  


Q ss_pred             --ceeEeecCCCCeEEEEEecCC--cEEEEEcCCcEEEEECCCcceeeeeecCCC-----------Ccee-EecCCCCcE
Q 018784          179 --KIVQTLETKSPVTSAEVSRDG--RYITTADGSSVKFWDANHFGLVKGYNMPCN-----------TESA-SLEPKLGNI  242 (350)
Q Consensus       179 --~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~  242 (350)
                        ..+..+...+.|..+.|..++  +++..+...+..+|+++...+...+..+..           ...+ ...+.+...
T Consensus       201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~  280 (376)
T KOG1188|consen  201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDT  280 (376)
T ss_pred             hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcce
Confidence              245566677889999999888  777777788999999988765544433211           0111 122333445


Q ss_pred             EEEecC-CCeEEEEEcc---c---CeeEEeecC-CCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          243 FIAGGE-DMWVHVFDFH---T---GEQIGCNKG-HHGPVHCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       243 l~sg~~-d~~i~v~d~~---~---~~~~~~~~~-h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                      ++.++. -++..++-+.   +   ++.+..+++ |..-|.++.|...+.++.||++||.+.+|..
T Consensus       281 ~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  281 CALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             EEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            554444 4555554332   2   334556665 6777899999888899999999999999985

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=5.5e-22  Score=172.46  Aligned_cols=231  Identities=17%  Similarity=0.218  Sum_probs=179.1

Q ss_pred             CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCee
Q 018784           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK   96 (350)
Q Consensus        17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~   96 (350)
                      ++|.+++-+   |+|.+|+.|+--+.+.||.+.+|+.+..+.+|-.+|+++.|+.|+.+++|||.||.|.+|.+..    
T Consensus        82 g~v~al~s~---n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~----  154 (476)
T KOG0646|consen   82 GPVHALASS---NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD----  154 (476)
T ss_pred             cceeeeecC---CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe----
Confidence            478888555   5999999988999999999999999999999999999999999999999999999999999632    


Q ss_pred             eeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCC-CCcEEEEEeCCCeEEEEEC
Q 018784           97 HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS-DQTILSSCTDSGGVRLWDA  175 (350)
Q Consensus        97 ~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~s~~~dg~i~iwd~  175 (350)
                                          ++++..|+.         ..+......|.-+|+.+..... ....+++++.|+++++||+
T Consensus       155 --------------------lv~a~~~~~---------~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl  205 (476)
T KOG0646|consen  155 --------------------LVSADNDHS---------VKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDL  205 (476)
T ss_pred             --------------------ecccccCCC---------ccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEe
Confidence                                222333321         1122334556667777765543 3456888999999999999


Q ss_pred             CCCceeEeecCCCCeEEEEEecCCcEEEE-EcCCcEEEEECCCcc----------------eeeeeecCCC--CceeEec
Q 018784          176 RSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFG----------------LVKGYNMPCN--TESASLE  236 (350)
Q Consensus       176 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~----------------~~~~~~~~~~--~~~~~~~  236 (350)
                      ..+..+.++..+.++.++.++|-++.+.. +.+|.|.+.++.+..                .++.+..+.+  ..++..-
T Consensus       206 S~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai  285 (476)
T KOG0646|consen  206 SLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI  285 (476)
T ss_pred             ccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE
Confidence            99999999999999999999998876655 467888887765432                1122222333  2333333


Q ss_pred             CCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCC
Q 018784          237 PKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGE  283 (350)
Q Consensus       237 ~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~  283 (350)
                      ..++.+|++|+.||+++|||+.+.++++++....++|+-+.+.|-.+
T Consensus       286 s~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~  332 (476)
T KOG0646|consen  286 STDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER  332 (476)
T ss_pred             ecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence            45799999999999999999999999988887888999999966533

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.90  E-value=2.5e-22  Score=171.30  Aligned_cols=207  Identities=23%  Similarity=0.348  Sum_probs=164.0

Q ss_pred             ceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC-------ceeeeccCccCCeEEEEECCCC-cEEEEe
Q 018784            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDANA-LFSASG   79 (350)
Q Consensus         8 ~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~-------~~~~~l~gH~~~V~~v~~~~~~-~~l~s~   79 (350)
                      .|++ .||+++|.+++|+|+  +...+||||.|.+|.||++-.+       +++..|.||+..|-.++|+|.. ..|+|+
T Consensus        74 ~P~v-~GHt~~vLDi~w~Pf--nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa  150 (472)
T KOG0303|consen   74 YPLV-CGHTAPVLDIDWCPF--NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA  150 (472)
T ss_pred             CCCc-cCccccccccccCcc--CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc
Confidence            4553 799999999999994  5568999999999999996432       5577899999999999999864 688999


Q ss_pred             eCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCC-cEEEEEEeCCCC
Q 018784           80 SADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG-SIRTVAWLHSDQ  158 (350)
Q Consensus        80 s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~  158 (350)
                      |.|.+|.+||+.+++...++.|...|+++.|+.+|.+|+|.+.|+.|||||..+++..... ..|.+ ...-+.|... +
T Consensus       151 g~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~k~~Raifl~~-g  228 (472)
T KOG0303|consen  151 GSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGAKPARAIFLAS-G  228 (472)
T ss_pred             cCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccccCCCcceeEEecc-C
Confidence            9999999999999999999999999999999999999999999999999999876654443 33333 3333445544 3


Q ss_pred             cEEEEE---eCCCeEEEEECCCCc---eeEeecCCCCeEEEEEecCCcEEEE-E-cCCcEEEEECCCcc
Q 018784          159 TILSSC---TDSGGVRLWDARSGK---IVQTLETKSPVTSAEVSRDGRYITT-A-DGSSVKFWDANHFG  219 (350)
Q Consensus       159 ~~~~s~---~~dg~i~iwd~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~-~-~~~~i~vwd~~~~~  219 (350)
                      .++.+|   ..++++-+||..+-+   .+.++...+.|.--.+.++.+++.. + .|+.||+|.+....
T Consensus       229 ~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  229 KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             ceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            466555   355789999976543   4556667778877778888876543 3 57899999986644

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.9e-21  Score=175.63  Aligned_cols=250  Identities=17%  Similarity=0.223  Sum_probs=189.1

Q ss_pred             ccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee--ccccEeEE
Q 018784           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRAC  108 (350)
Q Consensus        31 g~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~--h~~~V~~~  108 (350)
                      ...||.|.. ..+.+|+..+++.....+-+.+.|+++.|+++|.+||.|-.+|.|.|||..+.+....+.  |...|-++
T Consensus       188 ~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~l  266 (484)
T KOG0305|consen  188 ANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSL  266 (484)
T ss_pred             CCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEE
Confidence            346676654 678999999998766555568999999999999999999999999999998887766653  78899999


Q ss_pred             EEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec-CC
Q 018784          109 AFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TK  187 (350)
Q Consensus       109 ~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~-~~  187 (350)
                      +|.  ...+.+|+.|+.|..+|+...+.......+|...|+.+.|++ ++..+++|+.|+.+.|||....+++..+. +.
T Consensus       267 aW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~  343 (484)
T KOG0305|consen  267 AWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHT  343 (484)
T ss_pred             ecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccc
Confidence            999  667899999999999999876655555677899999999985 67789999999999999997766665554 45


Q ss_pred             CCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEec--CCCeEEEEEcccCeeEEe
Q 018784          188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG--EDMWVHVFDFHTGEQIGC  265 (350)
Q Consensus       188 ~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~--~d~~i~v~d~~~~~~~~~  265 (350)
                      ..|..++|+|-.                                        ..+||+|+  .|+.|++||..+|..+..
T Consensus       344 aAVKA~awcP~q----------------------------------------~~lLAsGGGs~D~~i~fwn~~~g~~i~~  383 (484)
T KOG0305|consen  344 AAVKALAWCPWQ----------------------------------------SGLLATGGGSADRCIKFWNTNTGARIDS  383 (484)
T ss_pred             eeeeEeeeCCCc----------------------------------------cCceEEcCCCcccEEEEEEcCCCcEecc
Confidence            678888888731                                        23334332  366666666666666544


Q ss_pred             ecCCCcCEEEEEEcCCCCEEEE--ecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccch
Q 018784          266 NKGHHGPVHCVRFSPGGESYAS--GSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGK  340 (350)
Q Consensus       266 ~~~h~~~v~~l~~sp~~~~las--gs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~  340 (350)
                      .. -...|.+|.|++..+-|++  |-.+..|.||++...+.....               ..|+.++.-+.++|||.
T Consensus       384 vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l---------------~gH~~RVl~la~SPdg~  444 (484)
T KOG0305|consen  384 VD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL---------------LGHTSRVLYLALSPDGE  444 (484)
T ss_pred             cc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee---------------cCCcceeEEEEECCCCC
Confidence            43 2345999999998755544  556789999999775544444               34455566666666654

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.90  E-value=1.6e-22  Score=177.17  Aligned_cols=243  Identities=20%  Similarity=0.328  Sum_probs=193.6

Q ss_pred             CccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe---ee---eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECC
Q 018784           59 GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE---KH---SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN  132 (350)
Q Consensus        59 gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~---~~---~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~  132 (350)
                      .|..-|.++.++...+.+.||| .|.|||||+.....   +.   .++..+.+++|.+.|||..|++|+.-.++.|||+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            4878888999998889988865 58899999864422   22   23456789999999999999999999999999998


Q ss_pred             CCCCCCeeecCC-CCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEE-EEEcCCc
Q 018784          133 RPDAPPREVGNS-SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYI-TTADGSS  209 (350)
Q Consensus       133 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l-~~~~~~~  209 (350)
                      .++...+..... ....++++.+ +|.+++.+|-.||.|.|||+++...++.++.+ ..+.++.++++|.-| +.+-|.+
T Consensus       496 apTprikaeltssapaCyALa~s-pDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt  574 (705)
T KOG0639|consen  496 APTPRIKAELTSSAPACYALAIS-PDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT  574 (705)
T ss_pred             CCCcchhhhcCCcchhhhhhhcC-CccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence            776554432222 2234555655 46667777778899999999999999999865 578899999999655 5667999


Q ss_pred             EEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEec
Q 018784          210 VKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS  289 (350)
Q Consensus       210 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs  289 (350)
                      ||.||+|..+.+..+.+.....++..+| .+..+++|=..+.+.|...... .-..+.-|..-|.++.|.+.|++++|.+
T Consensus       575 vRcWDlregrqlqqhdF~SQIfSLg~cP-~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStG  652 (705)
T KOG0639|consen  575 VRCWDLREGRQLQQHDFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTG  652 (705)
T ss_pred             eeehhhhhhhhhhhhhhhhhheecccCC-CccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecC
Confidence            9999999998888777777766776676 4789999999998888776433 3345667899999999999999999999


Q ss_pred             CCCcEEEecCCCCCcc
Q 018784          290 EDGTIRIWQTNPPNHE  305 (350)
Q Consensus       290 ~Dg~v~vw~~~~~~~~  305 (350)
                      .|..+..|.......+
T Consensus       653 kDnlLnawrtPyGasi  668 (705)
T KOG0639|consen  653 KDNLLNAWRTPYGASI  668 (705)
T ss_pred             chhhhhhccCccccce
Confidence            9999999998765543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=3.5e-20  Score=162.71  Aligned_cols=274  Identities=19%  Similarity=0.259  Sum_probs=204.3

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceee---eccCcc-CCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG---TFEGHK-GAVWSCCLDANALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~---~l~gH~-~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      .+.|..+.|+|..|.  ++++.+. +.+..|..+.+.+.+   .+++++ .-|.|++|.++|.. +||.++|.|-||+..
T Consensus       200 ne~v~~a~FHPtd~n--liit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdv-iTgDS~G~i~Iw~~~  275 (626)
T KOG2106|consen  200 NEVVFLATFHPTDPN--LIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDV-ITGDSGGNILIWSKG  275 (626)
T ss_pred             cceEEEEEeccCCCc--EEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCE-EeecCCceEEEEeCC
Confidence            456778889995554  7777766 778999988876644   566665 45899999999988 689999999999986


Q ss_pred             CCCe-eeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeec----------------------------
Q 018784           92 TGDE-KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG----------------------------  142 (350)
Q Consensus        92 ~~~~-~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~----------------------------  142 (350)
                      +.+. +....|++.|.++..-.+|++| +|+.|+.|..||-.-.........                            
T Consensus       276 ~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~G  354 (626)
T KOG2106|consen  276 TNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQG  354 (626)
T ss_pred             CceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEe
Confidence            6553 2334799999999999999755 599999999998321000000000                            


Q ss_pred             -----------CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEE
Q 018784          143 -----------NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVK  211 (350)
Q Consensus       143 -----------~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~  211 (350)
                                 .|....+.++ .++....+++|+.|+.+++|+  ..++..+.....++.++.|+|.|.+++....|.-.
T Consensus       355 t~~~~f~~~v~gh~delwgla-~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~  431 (626)
T KOG2106|consen  355 TLENGFTLTVQGHGDELWGLA-THPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWF  431 (626)
T ss_pred             eecCCceEEEEecccceeeEE-cCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcceEEEeeccceEE
Confidence                       1122233333 245566788999999999999  67888888888999999999999555555678889


Q ss_pred             EEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEccc-CeeEEee-cCCCcCEEEEEEcCCCCEEEEec
Q 018784          212 FWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT-GEQIGCN-KGHHGPVHCVRFSPGGESYASGS  289 (350)
Q Consensus       212 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~-~~~~~~~-~~h~~~v~~l~~sp~~~~lasgs  289 (350)
                      +.|..+...+....- ..+.++.-..++|.+|+.|+.|+.|++|-+.. |+.+... +.|..+|+.+.||+|+++|.+-|
T Consensus       432 V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S  510 (626)
T KOG2106|consen  432 VLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS  510 (626)
T ss_pred             EEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEecc
Confidence            999988666655444 33334444445799999999999999999864 4554433 34458899999999999999999


Q ss_pred             CCCcEEEec
Q 018784          290 EDGTIRIWQ  298 (350)
Q Consensus       290 ~Dg~v~vw~  298 (350)
                      -|-.|..|.
T Consensus       511 ~d~eiLyW~  519 (626)
T KOG2106|consen  511 GDYEILYWK  519 (626)
T ss_pred             CceEEEEEc
Confidence            999999993

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=3.5e-21  Score=164.31  Aligned_cols=281  Identities=18%  Similarity=0.203  Sum_probs=214.5

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCC------CCceeeeccC-ccCCeEEEEECCCCcEEEEeeCCCeE
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE------TGDWIGTFEG-HKGAVWSCCLDANALFSASGSADFTA   85 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~------~~~~~~~l~g-H~~~V~~v~~~~~~~~l~s~s~Dg~v   85 (350)
                      +||++-|.++.|+.   ++++||+|+.|..+++|+++      +.+++..... |...|.|++|.....++.+|+.+++|
T Consensus        53 ~~H~GCiNAlqFS~---N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   53 REHTGCINALQFSH---NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhccccceeeecc---CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            79999999999986   79999999999999999964      3466655543 56889999999999999999999999


Q ss_pred             EEeeCCCCCeeeeeeccc---cEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC--eeecCCCCcEEEEEEeCCCCcE
Q 018784           86 KLWDALTGDEKHSFEHKH---IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--REVGNSSGSIRTVAWLHSDQTI  160 (350)
Q Consensus        86 ~vWd~~~~~~~~~~~h~~---~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~  160 (350)
                      .+.|+++.+.+..++|.+   .|+.+..+|..+.|++.+.++.|.+||......+.  ...........++.|.|....+
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L  209 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL  209 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence            999999999888888765   89999999999999999999999999987544222  2334455567788888888999


Q ss_pred             EEEEeCCCeEEEEECCCCce-eEe------ecC-CCCeEEEEEecCCcEEEEEcCC-cEEEEECCCccee-eeeecCC--
Q 018784          161 LSSCTDSGGVRLWDARSGKI-VQT------LET-KSPVTSAEVSRDGRYITTADGS-SVKFWDANHFGLV-KGYNMPC--  228 (350)
Q Consensus       161 ~~s~~~dg~i~iwd~~~~~~-~~~------~~~-~~~v~~~~~~~~~~~l~~~~~~-~i~vwd~~~~~~~-~~~~~~~--  228 (350)
                      +++++..+.+.+||.+..+. +..      ++. ......+.|+|+|..+.+-..+ .=.+||+-+.++. ..+....  
T Consensus       210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G  289 (609)
T KOG4227|consen  210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG  289 (609)
T ss_pred             EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence            99999999999999986532 211      111 2344677899999877655433 3456776654432 2222111  


Q ss_pred             -----CCceeEecCCCCcEEEEecCCCeEEEEEccc-----C-----e-------------eEEeecCCCcCEEEEEEcC
Q 018784          229 -----NTESASLEPKLGNIFIAGGEDMWVHVFDFHT-----G-----E-------------QIGCNKGHHGPVHCVRFSP  280 (350)
Q Consensus       229 -----~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~-----~-----~-------------~~~~~~~h~~~v~~l~~sp  280 (350)
                           ...+++|.  +...+++|+.+=.|++|.+..     |     .             .+..++||..-+..+.|+|
T Consensus       290 Y~N~~T~KS~~F~--~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~  367 (609)
T KOG4227|consen  290 YCNIKTIKSMTFI--DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ  367 (609)
T ss_pred             ceeeeeeeeeeee--cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC
Confidence                 11222332  345588999888999998731     1     1             2346789999999999999


Q ss_pred             CCCEEEEecCCCcEEEec
Q 018784          281 GGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       281 ~~~~lasgs~Dg~v~vw~  298 (350)
                      ...+|++.+-...++||.
T Consensus       368 H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  368 HNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             CcceEeccchhhheeccc
Confidence            999999999999999995

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.89  E-value=1.9e-21  Score=174.87  Aligned_cols=124  Identities=23%  Similarity=0.230  Sum_probs=98.4

Q ss_pred             cceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc--ee---eeccCccC-CeEEEEECCCCcEEEEee
Q 018784            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WI---GTFEGHKG-AVWSCCLDANALFSASGS   80 (350)
Q Consensus         7 ~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~--~~---~~l~gH~~-~V~~v~~~~~~~~l~s~s   80 (350)
                      .+++ +.+|++.|.++.|+|+.  ..+|||+|.|..++||.+..|-  .+   ...-||.+ .|.++.|+|...-+...+
T Consensus        71 ~i~~-l~~H~d~VtDl~FspF~--D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~  147 (1012)
T KOG1445|consen   71 DIGI-LAAHGDQVTDLGFSPFA--DELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASG  147 (1012)
T ss_pred             ccce-eecccceeeccCccccc--hhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEec
Confidence            4455 58999999999999964  4589999999999999986431  11   12234544 467889987544333445


Q ss_pred             CCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCC
Q 018784           81 ADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR  133 (350)
Q Consensus        81 ~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~  133 (350)
                      .-|++.|||+.+++....+ .|...|.+..|+.||.+|++.+.|+.|+|||...
T Consensus       148 a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa  201 (1012)
T KOG1445|consen  148 AHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA  201 (1012)
T ss_pred             cCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence            7899999999999988776 5999999999999999999999999999999653

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=8e-21  Score=177.34  Aligned_cols=239  Identities=18%  Similarity=0.285  Sum_probs=189.0

Q ss_pred             cCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCC-Ceeeeee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCC
Q 018784           58 EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG-DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD  135 (350)
Q Consensus        58 ~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~-~~~~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~  135 (350)
                      .+|+..-..+++.++|.++.+++.||.||+|+.... +...++. +...|.+++...  ..|++|+.+++|.+|....++
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s--~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS--NHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc--cceEEeeccceEEEeeCCCCC
Confidence            468888899999999999999999999999997655 4444444 777788877654  489999999999999987654


Q ss_pred             CCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec-CCCCeEEEEEecCCcEEEEE-cCCcEEEE
Q 018784          136 APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFW  213 (350)
Q Consensus       136 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~vw  213 (350)
                      .. ..+....-+++.++++. ++.+++.|++|-.|++-++........+. +..+|.++.++|++.+|+++ .+|.|++|
T Consensus        88 ~~-~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw  165 (933)
T KOG1274|consen   88 ED-TILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW  165 (933)
T ss_pred             cc-ceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence            32 22334456788888875 56688889999999999998776655555 56899999999999999876 58999999


Q ss_pred             ECCCcceeeeeecC--CC-------CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecC--CCcCEEEEEEcCCC
Q 018784          214 DANHFGLVKGYNMP--CN-------TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG--HHGPVHCVRFSPGG  282 (350)
Q Consensus       214 d~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~--h~~~v~~l~~sp~~  282 (350)
                      |+.++.+.+++..-  .+       .....+.|+ +..|+.-+.|+.|.+|+..+++....+..  ++..+..+.|+|+|
T Consensus       166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk-~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG  244 (933)
T KOG1274|consen  166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPK-GGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG  244 (933)
T ss_pred             EcccchhhhhcccCCccccccccceeeeeeecCC-CCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCC
Confidence            99988776655431  11       123456665 45666677899999999999999887753  44559999999999


Q ss_pred             CEEEEecCCCcEEEecCCC
Q 018784          283 ESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       283 ~~lasgs~Dg~v~vw~~~~  301 (350)
                      +|||++..||.|.|||+.+
T Consensus       245 ~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  245 KYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             cEEeeeccCCcEEEEeccc
Confidence            9999999999999999984

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.89  E-value=5.4e-22  Score=173.68  Aligned_cols=197  Identities=14%  Similarity=0.175  Sum_probs=165.5

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH   97 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~   97 (350)
                      .-.||+...   -+.|+++|+..++|+|||+....+.+.+.+|+..|++|.+.....++|+++..|.|.|..+.++....
T Consensus        81 ~~~Cv~~~s---~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt  157 (673)
T KOG4378|consen   81 NAFCVACAS---QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT  157 (673)
T ss_pred             hHHHHhhhh---cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc
Confidence            334454443   24699999999999999999888888999999999999999999999999999999999999888777


Q ss_pred             eeecc--ccEeEEEEcCCCCeE-EEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 018784           98 SFEHK--HIVRACAFSEDTHLL-LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD  174 (350)
Q Consensus        98 ~~~h~--~~V~~~~~~~~~~~l-~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd  174 (350)
                      .+.|.  ..|+-+.|+|..++| .+++.+|.|.+||+............|..+...++|+|.+..++++-+.|..|.+||
T Consensus       158 ~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD  237 (673)
T KOG4378|consen  158 TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD  237 (673)
T ss_pred             ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence            77765  457899999987654 578999999999998766666667788999999999999999999999999999999


Q ss_pred             CCCCceeEeecCCCCeEEEEEecCCcEEEEEc-CCcEEEEECCC
Q 018784          175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANH  217 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~  217 (350)
                      +++.+....+....|...++|.++|.+|+++. .|.|..||+|.
T Consensus       238 ~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  238 IRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             cccccccceeeecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence            99988888888888899999998877766553 45555555543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=1.4e-21  Score=174.59  Aligned_cols=246  Identities=24%  Similarity=0.315  Sum_probs=186.9

Q ss_pred             ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCe-EEEeeCCCeEEEEE
Q 018784           52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL-LLTGGFEKILRIFD  130 (350)
Q Consensus        52 ~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~-l~sg~~d~~v~vwd  130 (350)
                      .+...+.||++.|+++..++.|..|++||.||+||||.+.++.++.++.-.+.|+|++|+|.+.. +++++.+..+.+-+
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn  470 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVN  470 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence            34457799999999999999999999999999999999999999999988889999999997642 22333333344443


Q ss_pred             CCCC------------------------------------CCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC--CeEEE
Q 018784          131 LNRP------------------------------------DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS--GGVRL  172 (350)
Q Consensus       131 ~~~~------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d--g~i~i  172 (350)
                      ..=+                                    +......-.|...|..+.|...+..+.+++.++  ..|.|
T Consensus       471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli  550 (733)
T KOG0650|consen  471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI  550 (733)
T ss_pred             ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence            2100                                    000011223556788888876666666555544  46888


Q ss_pred             EECCCCceeEee-cCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCc-eeEecCCCCcEEEEecCCC
Q 018784          173 WDARSGKIVQTL-ETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPKLGNIFIAGGEDM  250 (350)
Q Consensus       173 wd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~sg~~d~  250 (350)
                      .++...+...-+ ...+.+..+.|+|.--+|..++...|++||+....+++.+.-.+... ..+.++ .|..|+.|+.|+
T Consensus       551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~d~  629 (733)
T KOG0650|consen  551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSYDK  629 (733)
T ss_pred             EecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecCCC
Confidence            998766554444 34567889999999888888899999999998877776654444333 334444 578899999999


Q ss_pred             eEEEEEcccC-eeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          251 WVHVFDFHTG-EQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       251 ~i~v~d~~~~-~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      ++..||+.-. +...++..|...+++++|++.-++|+||+.||++.|+-
T Consensus       630 k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  630 KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence            9999999865 56778899999999999999999999999999999984

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=2.4e-22  Score=191.50  Aligned_cols=241  Identities=21%  Similarity=0.306  Sum_probs=193.1

Q ss_pred             CeEEEEECCCCc----EEEEeeCCCeEEEeeCCC---CCeeeee----eccccEeEEEEcCCC-CeEEEeeCCCeEEEEE
Q 018784           63 AVWSCCLDANAL----FSASGSADFTAKLWDALT---GDEKHSF----EHKHIVRACAFSEDT-HLLLTGGFEKILRIFD  130 (350)
Q Consensus        63 ~V~~v~~~~~~~----~l~s~s~Dg~v~vWd~~~---~~~~~~~----~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd  130 (350)
                      .-+.++|.+.+.    ++|.|..||.|-+||...   +.....+    .|++.|+.++|++.. ++||+|+.||.|.|||
T Consensus        66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD  145 (1049)
T KOG0307|consen   66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD  145 (1049)
T ss_pred             cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence            346788876554    589999999999999754   2222222    599999999999954 5999999999999999


Q ss_pred             CCCCCCCCee-ecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCC---eEEEEEecCC--cEEEE
Q 018784          131 LNRPDAPPRE-VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP---VTSAEVSRDG--RYITT  204 (350)
Q Consensus       131 ~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~---v~~~~~~~~~--~~l~~  204 (350)
                      +.+.+.+... .......|.+++|...-++++++++.+|.+.|||+|..+.+..+.....   +..+.|+|+.  +++++
T Consensus       146 lnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~A  225 (1049)
T KOG0307|consen  146 LNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVA  225 (1049)
T ss_pred             cCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeee
Confidence            9886655443 2335677999999988889999999999999999999988877765443   8899999986  34444


Q ss_pred             EcC-C--cEEEEECCCcc-eeeeeecCC-CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEc
Q 018784          205 ADG-S--SVKFWDANHFG-LVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFS  279 (350)
Q Consensus       205 ~~~-~--~i~vwd~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s  279 (350)
                      ++| +  .|.+||+|.-. ..+.+..+. ......+++.+.++|++++.|+.|.+|+..+++.+..+.....++..+.|+
T Consensus       226 s~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~  305 (1049)
T KOG0307|consen  226 SGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWC  305 (1049)
T ss_pred             cCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeec
Confidence            443 2  69999998643 445554433 346778888888999999999999999999999999998888999999999


Q ss_pred             CCCC-EEEEecCCCcEEEecCCCCC
Q 018784          280 PGGE-SYASGSEDGTIRIWQTNPPN  303 (350)
Q Consensus       280 p~~~-~lasgs~Dg~v~vw~~~~~~  303 (350)
                      |... .|+.++.||.|-|+.+....
T Consensus       306 pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  306 PRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCCcchhhhheeccceeeeeeecCC
Confidence            9876 78899999999999886544

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.89  E-value=1e-21  Score=159.39  Aligned_cols=283  Identities=20%  Similarity=0.208  Sum_probs=188.5

Q ss_pred             eeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeecc-CccCCeEEEEECCCCcEEEEeeCCCeEEE
Q 018784            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKL   87 (350)
Q Consensus         9 ~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~l~s~s~Dg~v~v   87 (350)
                      .+|+|+|...|+++.|..   . .+|.+|..-|.+++|++.+-+.+..++ .|+..|..+..-|+ ..+.|-+.|+.+.+
T Consensus         7 ~fvLRp~~~~v~s~~fqa---~-~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l   81 (323)
T KOG0322|consen    7 FFVLRPHSSSVTSVLFQA---N-ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL   81 (323)
T ss_pred             eeEeccccchheehhhcc---c-hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence            467899999999999975   3 358999999999999999998888888 56788888887776 45578899999999


Q ss_pred             eeCCCCCeeeeeeccccEeEEEEcC-----CC----CeEEEeeCCC-eEEEEECCCCCCCC---eeecCCCCcEEEEEEe
Q 018784           88 WDALTGDEKHSFEHKHIVRACAFSE-----DT----HLLLTGGFEK-ILRIFDLNRPDAPP---REVGNSSGSIRTVAWL  154 (350)
Q Consensus        88 Wd~~~~~~~~~~~h~~~V~~~~~~~-----~~----~~l~sg~~d~-~v~vwd~~~~~~~~---~~~~~~~~~v~~~~~~  154 (350)
                      |++..+..+.  .|.-.++++.|.+     ++    +.++.-+..- .+.+=|..+.....   .......+.+.+..+-
T Consensus        82 w~ia~s~~i~--i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~  159 (323)
T KOG0322|consen   82 WTIAYSAFIS--IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD  159 (323)
T ss_pred             EEccCcceEE--EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence            9987643221  1222233333322     11    1111111100 01111211111100   0011234556665544


Q ss_pred             CCC--CcEEEEEeCCCeEEEEECCCCceeEeec-----------CCCCeEEEEEecCC-cEEEEEcCCcEEEEECCCc--
Q 018784          155 HSD--QTILSSCTDSGGVRLWDARSGKIVQTLE-----------TKSPVTSAEVSRDG-RYITTADGSSVKFWDANHF--  218 (350)
Q Consensus       155 ~~~--~~~~~s~~~dg~i~iwd~~~~~~~~~~~-----------~~~~v~~~~~~~~~-~~l~~~~~~~i~vwd~~~~--  218 (350)
                      ..+  ..++++|.++|.+.+||+.++..+..+.           +..++.++.+.+.- +-+..+-+..+..|.+...  
T Consensus       160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g  239 (323)
T KOG0322|consen  160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG  239 (323)
T ss_pred             ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence            333  3567889999999999999874433332           34678888877532 2233333456777766432  


Q ss_pred             c--eeeeeec-CCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEE
Q 018784          219 G--LVKGYNM-PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIR  295 (350)
Q Consensus       219 ~--~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~  295 (350)
                      .  ....... .+........+ +++++++++.|++||+|+.++.+++..++.|.+.|.+++|+|+..+||++|.|++|.
T Consensus       240 slq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rIS  318 (323)
T KOG0322|consen  240 SLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARIS  318 (323)
T ss_pred             cccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEE
Confidence            1  1111222 12334455555 589999999999999999999999999999999999999999999999999999999


Q ss_pred             EecC
Q 018784          296 IWQT  299 (350)
Q Consensus       296 vw~~  299 (350)
                      +|++
T Consensus       319 LWkL  322 (323)
T KOG0322|consen  319 LWKL  322 (323)
T ss_pred             eeec
Confidence            9986

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=3e-22  Score=183.58  Aligned_cols=185  Identities=22%  Similarity=0.312  Sum_probs=153.1

Q ss_pred             EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCC-CcEEEEeeCCCeEEEee
Q 018784           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWD   89 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~vWd   89 (350)
                      ++..|+..+.++.|++..|.  +|+|||.||+|++||+...+-..++.+-..+|+-|.|+|. +..|+++...|.+++||
T Consensus       128 ~f~EH~Rs~~~ldfh~tep~--iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWD  205 (839)
T KOG0269|consen  128 VFNEHERSANKLDFHSTEPN--ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWD  205 (839)
T ss_pred             HhhhhccceeeeeeccCCcc--EEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEee
Confidence            57899999999999998886  9999999999999999888888888999999999999985 67889999999999999


Q ss_pred             CCCCC-ee-eeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe--
Q 018784           90 ALTGD-EK-HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT--  165 (350)
Q Consensus        90 ~~~~~-~~-~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~--  165 (350)
                      +.... +. ....|++.|.|+.|+|++.+|||||.|+.|+|||+.++.......-+...++..+.|-|.....|++|+  
T Consensus       206 lRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv  285 (839)
T KOG0269|consen  206 LRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMV  285 (839)
T ss_pred             ccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhcc
Confidence            86543 22 234699999999999999999999999999999998766665555566778899999998888888775  


Q ss_pred             CCCeEEEEECCCC-ceeEeecCC-CCeEEEEEec
Q 018784          166 DSGGVRLWDARSG-KIVQTLETK-SPVTSAEVSR  197 (350)
Q Consensus       166 ~dg~i~iwd~~~~-~~~~~~~~~-~~v~~~~~~~  197 (350)
                      .|-.|+|||++.. -+..++..+ ..++.++|..
T Consensus       286 ~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~  319 (839)
T KOG0269|consen  286 VDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS  319 (839)
T ss_pred             ccceEEEEeeccccccceeeeccCccccceeccC
Confidence            4568999999765 344455444 4455666654

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.88  E-value=2e-21  Score=164.88  Aligned_cols=171  Identities=24%  Similarity=0.390  Sum_probs=145.0

Q ss_pred             cccceeE-eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceee---eccCccCCeEEEEECCC-CcEEEEe
Q 018784            5 KVAVPLV-CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG---TFEGHKGAVWSCCLDAN-ALFSASG   79 (350)
Q Consensus         5 ~~~~~~~-~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~---~l~gH~~~V~~v~~~~~-~~~l~s~   79 (350)
                      +...|+. +.||...=++++|||+.. | .|+||..-+.|++|...++.+..   .|.+|+.+|--++|+|. ..+|||+
T Consensus       199 s~~~Pl~t~~ghk~EGy~LdWSp~~~-g-~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaSc  276 (440)
T KOG0302|consen  199 SEFRPLFTFNGHKGEGYGLDWSPIKT-G-RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASC  276 (440)
T ss_pred             cccCceEEecccCccceeeecccccc-c-ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEee
Confidence            4445654 469999999999999543 3 47888888889999999988854   57889999999999986 5689999


Q ss_pred             eCCCeEEEeeCCCC---CeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCC--CCCCeeecCCCCcEEEEEEe
Q 018784           80 SADFTAKLWDALTG---DEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP--DAPPREVGNSSGSIRTVAWL  154 (350)
Q Consensus        80 s~Dg~v~vWd~~~~---~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~--~~~~~~~~~~~~~v~~~~~~  154 (350)
                      |-||+|||||+..+   .++.+-.|..-|+.+.|+..-.+||+|+.||+++|||++..  ..+......|..+|+++.|.
T Consensus       277 S~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~  356 (440)
T KOG0302|consen  277 SCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWH  356 (440)
T ss_pred             ecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEec
Confidence            99999999999877   35555679999999999998889999999999999999753  34555678899999999999


Q ss_pred             CCCCcEEEEEeCCCeEEEEECCC
Q 018784          155 HSDQTILSSCTDSGGVRLWDARS  177 (350)
Q Consensus       155 ~~~~~~~~s~~~dg~i~iwd~~~  177 (350)
                      |.+...+++++.|.+|.+||+..
T Consensus       357 p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  357 PHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             cccCceEEeccCCCcEEEEEeec
Confidence            98888888889999999999853

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.88  E-value=2.5e-19  Score=157.45  Aligned_cols=281  Identities=19%  Similarity=0.268  Sum_probs=199.5

Q ss_pred             ccCCceeEEEecccCCCccEEEEE--eCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSA--SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasg--s~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      +-+..|.+++|++... |.+|..-  |++.-+.+||=..+..+...+.-...|..+.|+|.+.-+.-....+.+..|+..
T Consensus       152 ~f~~GV~~vaFsk~~~-G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~  230 (626)
T KOG2106|consen  152 FFDRGVTCVAFSKING-GSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLR  230 (626)
T ss_pred             cccccceeeeecccCC-CceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEcc
Confidence            4466899999998543 4444332  345557789977776666666666778888999866544444567899999988


Q ss_pred             CCCeeeee---e--ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeC
Q 018784           92 TGDEKHSF---E--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD  166 (350)
Q Consensus        92 ~~~~~~~~---~--h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~  166 (350)
                      .+......   +  .+..|.|++|.++|. ++||..+|.|.||+...... .+....|.+.|.++.... ++. ++||+.
T Consensus       231 ~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~-~k~~~aH~ggv~~L~~lr-~Gt-llSGgK  306 (626)
T KOG2106|consen  231 GGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRI-SKQVHAHDGGVFSLCMLR-DGT-LLSGGK  306 (626)
T ss_pred             CCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceE-EeEeeecCCceEEEEEec-Ccc-EeecCc
Confidence            77543332   2  346799999999997 67999999999999854333 333448899999998764 444 445999


Q ss_pred             CCeEEEEECCCC--c---------eeEeec-CC-----------------------------CCeEEEEEecCC-cEEEE
Q 018784          167 SGGVRLWDARSG--K---------IVQTLE-TK-----------------------------SPVTSAEVSRDG-RYITT  204 (350)
Q Consensus       167 dg~i~iwd~~~~--~---------~~~~~~-~~-----------------------------~~v~~~~~~~~~-~~l~~  204 (350)
                      |++|..||-.-.  +         .++++. ..                             .+...++..|+. +++++
T Consensus       307 DRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~  386 (626)
T KOG2106|consen  307 DRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTC  386 (626)
T ss_pred             cceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeec
Confidence            999999982111  0         111110 00                             122233445543 45667


Q ss_pred             EcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCE
Q 018784          205 ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGES  284 (350)
Q Consensus       205 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~  284 (350)
                      +.|+.+++|+  ..+++.+........+..|.|. + .++.|...|...+.|..+.+.+..-.. ..++.+++|+|+|.+
T Consensus       387 gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhps-g-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~  461 (626)
T KOG2106|consen  387 GQDKHVRLWN--DHKLEWTKIIEDPAECADFHPS-G-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAF  461 (626)
T ss_pred             cCcceEEEcc--CCceeEEEEecCceeEeeccCc-c-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCE
Confidence            7899999999  4455555555555566777775 4 999999999999999999776655555 788999999999999


Q ss_pred             EEEecCCCcEEEecCCCCCc
Q 018784          285 YASGSEDGTIRIWQTNPPNH  304 (350)
Q Consensus       285 lasgs~Dg~v~vw~~~~~~~  304 (350)
                      ||.||.|+.|+||.++....
T Consensus       462 lAvgs~d~~iyiy~Vs~~g~  481 (626)
T KOG2106|consen  462 LAVGSHDNHIYIYRVSANGR  481 (626)
T ss_pred             EEEecCCCeEEEEEECCCCc
Confidence            99999999999999865443

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.88  E-value=2.1e-21  Score=162.15  Aligned_cols=257  Identities=18%  Similarity=0.283  Sum_probs=180.6

Q ss_pred             cCCceeEEEecccCCC-ccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCC-CcEEEEeeCCCeEEEeeCCC
Q 018784           15 HSRPVVDLFYSPITPD-GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALT   92 (350)
Q Consensus        15 H~~~v~~~~~~~~s~d-g~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~vWd~~~   92 (350)
                      |.+..+.++++--+.+ .-+||.|+.-|.|+|.|+.++++...+.||..+|+.+.+.|+ .++++++|.|.+||+|++.+
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence            7777777777654443 348888899999999999999999999999999999999986 57899999999999999999


Q ss_pred             CCeeeeee----ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee---------------------------e
Q 018784           93 GDEKHSFE----HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE---------------------------V  141 (350)
Q Consensus        93 ~~~~~~~~----h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~---------------------------~  141 (350)
                      ..++..+.    |...|.+++|+++|.+++++|.|.++++|++..++.....                           .
T Consensus       168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~  247 (385)
T KOG1034|consen  168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT  247 (385)
T ss_pred             CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence            99998874    9999999999999999999999999999999743211100                           0


Q ss_pred             cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEEC-CCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcce
Q 018784          142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA-RSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGL  220 (350)
Q Consensus       142 ~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~  220 (350)
                      .-|...|-++.|+   +.+++|-+-++.|..|.. +-++.+.....+.....+        +..-.=....+|=+     
T Consensus       248 diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti--------~~~~~~~~c~iWfi-----  311 (385)
T KOG1034|consen  248 DIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTI--------LGEFDYPMCDIWFI-----  311 (385)
T ss_pred             ccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceee--------eeEeccCccceEEE-----
Confidence            1122333333333   245666666778888876 222222222221111111        00000001112211     


Q ss_pred             eeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEE--eecCC--CcCEEEEEEcCCCCEEEEecCCCcEEE
Q 018784          221 VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG--CNKGH--HGPVHCVRFSPGGESYASGSEDGTIRI  296 (350)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~--~~~~h--~~~v~~l~~sp~~~~lasgs~Dg~v~v  296 (350)
                                 ...+.+ -+++|+.|.+.|+|++|||+..++..  ++..+  ...|...+|+.|+.+|+..+.|++|.-
T Consensus       312 -----------rf~~d~-~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwr  379 (385)
T KOG1034|consen  312 -----------RFAFDP-WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWR  379 (385)
T ss_pred             -----------EEeecH-HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEE
Confidence                       112222 36789999999999999999876632  22222  346899999999999999999999999


Q ss_pred             ecC
Q 018784          297 WQT  299 (350)
Q Consensus       297 w~~  299 (350)
                      ||.
T Consensus       380 wdr  382 (385)
T KOG1034|consen  380 WDR  382 (385)
T ss_pred             EEe
Confidence            985

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.87  E-value=1.9e-20  Score=158.98  Aligned_cols=202  Identities=19%  Similarity=0.288  Sum_probs=159.1

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCC----------------CCceeeeccCccCCeEEEEECCCCc-EE
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE----------------TGDWIGTFEGHKGAVWSCCLDANAL-FS   76 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~----------------~~~~~~~l~gH~~~V~~v~~~~~~~-~l   76 (350)
                      +|-+.+.-+..+++- +..+.|+=+..|.|+||++.                ..+++.++.+|...=++++|+|-.. .|
T Consensus       149 ~h~g~~NRvr~~~~~-~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLG-NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             ccccccceeeecccC-CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            566666666655532 45678888889999999953                2356889999999999999998432 35


Q ss_pred             EEeeCCCeEEEeeCCCCCe----eeeeeccccEeEEEEcCC-CCeEEEeeCCCeEEEEECCCC-CCCCeeecCCCCcEEE
Q 018784           77 ASGSADFTAKLWDALTGDE----KHSFEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRP-DAPPREVGNSSGSIRT  150 (350)
Q Consensus        77 ~s~s~Dg~v~vWd~~~~~~----~~~~~h~~~V~~~~~~~~-~~~l~sg~~d~~v~vwd~~~~-~~~~~~~~~~~~~v~~  150 (350)
                      +||.--+.|++|...++.-    +....|+..|-.++|+|. ...|++||-|++|+|||++.+ .........|.+-|..
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV  307 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV  307 (440)
T ss_pred             ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence            7777778999999887652    223459999999999995 467899999999999999865 3344555788889999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEECCCC---ceeEeec-CCCCeEEEEEecCC--cEEEEEcCCcEEEEECCC
Q 018784          151 VAWLHSDQTILSSCTDSGGVRLWDARSG---KIVQTLE-TKSPVTSAEVSRDG--RYITTADGSSVKFWDANH  217 (350)
Q Consensus       151 ~~~~~~~~~~~~s~~~dg~i~iwd~~~~---~~~~~~~-~~~~v~~~~~~~~~--~~l~~~~~~~i~vwd~~~  217 (350)
                      +.|+..-. ++++|++||+++|||+|+.   +++..++ +..+|+++.|+|..  .+++++.|.+|.+||+..
T Consensus       308 ISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  308 ISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             EEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            99986544 9999999999999999864   5667776 56899999999854  566777899999999853

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.87  E-value=1.1e-20  Score=155.67  Aligned_cols=215  Identities=23%  Similarity=0.370  Sum_probs=162.1

Q ss_pred             cCccCCeEEEEECC-CCcEEEEeeCCCeEEEeeCCCCCe----------eeee------eccccEeEEEEcC-CCCeEEE
Q 018784           58 EGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALTGDE----------KHSF------EHKHIVRACAFSE-DTHLLLT  119 (350)
Q Consensus        58 ~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~~~~----------~~~~------~h~~~V~~~~~~~-~~~~l~s  119 (350)
                      .-|.++|+++.+.+ .|++++||+.||.|.+||++....          +..+      .|+-.|..+.|-| |..++.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            45889999999976 689999999999999999865431          1111      2666788998988 6668889


Q ss_pred             eeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCC--CCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEe
Q 018784          120 GGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS--DQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVS  196 (350)
Q Consensus       120 g~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~  196 (350)
                      ++.|.+++|||..+.+....  ..-.+.|++-+++|-  ..-++++|.+|-+|++.|+.+|..-+.+..+ ..|.++.|+
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~--F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws  197 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVD--FKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS  197 (397)
T ss_pred             ccccceEEEeecccceeeEE--eecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence            99999999999986443322  223456666666653  2457788889999999999999999999865 689999999


Q ss_pred             cCCcEEE-E-EcCCcEEEEECCCc-ceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCee---EEeecCCC
Q 018784          197 RDGRYIT-T-ADGSSVKFWDANHF-GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ---IGCNKGHH  270 (350)
Q Consensus       197 ~~~~~l~-~-~~~~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~---~~~~~~h~  270 (350)
                      |...++. + +.|+.||+||+|.- .+...+                               |..+++.   +.+-..|.
T Consensus       198 p~~e~vLatgsaDg~irlWDiRrasgcf~~l-------------------------------D~hn~k~~p~~~~n~ah~  246 (397)
T KOG4283|consen  198 PSSEWVLATGSADGAIRLWDIRRASGCFRVL-------------------------------DQHNTKRPPILKTNTAHY  246 (397)
T ss_pred             cCceeEEEecCCCceEEEEEeecccceeEEe-------------------------------ecccCccCcccccccccc
Confidence            9887753 3 35899999999763 333332                               2222211   11234689


Q ss_pred             cCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784          271 GPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       271 ~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~  305 (350)
                      +.|..++|+.++.++++.+.|..+++|+...+...
T Consensus       247 gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~nt  281 (397)
T KOG4283|consen  247 GKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNT  281 (397)
T ss_pred             ceeeeeeecccchhhhhccCccceEEeecccCccc
Confidence            99999999999999999999999999998765544

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=3.2e-21  Score=166.80  Aligned_cols=208  Identities=18%  Similarity=0.202  Sum_probs=163.3

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECC-CCcEEEEeeCCCeEEEeeC
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDA   90 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~   90 (350)
                      -.||++.|..+.++-..  ..+|||||.|.+|++||+.++++..++..|.+.|.++.|++ .+.+|++||.|++|++.|+
T Consensus       239 ~~gHTdavl~Ls~n~~~--~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~  316 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNF--RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDC  316 (463)
T ss_pred             cccchHHHHHHHhcccc--ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeec
Confidence            35899999999887532  35999999999999999999999999999999999999987 5789999999999999998


Q ss_pred             CCCC-eeeeeeccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784           91 LTGD-EKHSFEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (350)
Q Consensus        91 ~~~~-~~~~~~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg  168 (350)
                      .... .-..+...+.|-.++|.|.. ..++++..||+|+-+|++....+......|.+.|.++.++.....++++++.|+
T Consensus       317 R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~  396 (463)
T KOG0270|consen  317 RDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDK  396 (463)
T ss_pred             cCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccc
Confidence            6422 22344566779999998854 567788899999999999888888888999999999999988889999999999


Q ss_pred             eEEEEECCCCceeEeec--CC-CCeEEEEEecCCc--EEEEEcCCcEEEEECCCccee
Q 018784          169 GVRLWDARSGKIVQTLE--TK-SPVTSAEVSRDGR--YITTADGSSVKFWDANHFGLV  221 (350)
Q Consensus       169 ~i~iwd~~~~~~~~~~~--~~-~~v~~~~~~~~~~--~l~~~~~~~i~vwd~~~~~~~  221 (350)
                      +|++|++..-.+.....  .. +...+.++.|+--  +.+++..+.+++||+.+...+
T Consensus       397 ~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  397 VVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             eEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            99999986443321111  11 1233344455433  334445567999998776543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.87  E-value=5.1e-18  Score=155.72  Aligned_cols=284  Identities=33%  Similarity=0.531  Sum_probs=215.3

Q ss_pred             EeeccCCceeEEEecccCCCccEEEEEeC-CCCeeEeeCCCCceeeeccCccCCeEEEEECCCCc-EEEEeeCCCeEEEe
Q 018784           11 VCHGHSRPVVDLFYSPITPDGFFLVSASK-DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLW   88 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~-d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~-~l~s~s~Dg~v~vW   88 (350)
                      .+.+|...|..+.|+|   ++.++++++. |+.+++|+...+..+..+.+|...|.++++++++. ++++++.|+.|++|
T Consensus       150 ~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~w  226 (466)
T COG2319         150 TLEGHSESVTSLAFSP---DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW  226 (466)
T ss_pred             EEecCcccEEEEEECC---CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEE
Confidence            3579999999999987   7878888886 99999999999899999999999999999999987 66666999999999


Q ss_pred             eCCCCCeee-ee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeC
Q 018784           89 DALTGDEKH-SF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD  166 (350)
Q Consensus        89 d~~~~~~~~-~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~  166 (350)
                      |...+.... .+ .|...+ ...|+|++.++++++.|+.+++|++............|...+.++.|.+....++ +++.
T Consensus       227 d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~  304 (466)
T COG2319         227 DLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLA-SGSS  304 (466)
T ss_pred             ECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEE-EeeC
Confidence            887666555 23 465554 3389999989999999999999999755441222245577888998887444444 4778


Q ss_pred             CCeEEEEECCCCceeEeec--CC-CCeEEEEEecCCcEEE-E-EcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCc
Q 018784          167 SGGVRLWDARSGKIVQTLE--TK-SPVTSAEVSRDGRYIT-T-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGN  241 (350)
Q Consensus       167 dg~i~iwd~~~~~~~~~~~--~~-~~v~~~~~~~~~~~l~-~-~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (350)
                      |+.+++||.++........  .+ ..+..+.+.+++..+. + ..++.+++|+....................+.+ . .
T Consensus       305 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~  382 (466)
T COG2319         305 DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D-G  382 (466)
T ss_pred             CCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-C-C
Confidence            8889999998887665554  33 3588888833323443 3 356789999998776322222222234445555 4 4


Q ss_pred             EEEE-ecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784          242 IFIA-GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       242 ~l~s-g~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~  301 (350)
                      .+.. +..++.+.+|+............+...+....+++++..+++++.+..+++|+...
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         383 RVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             CEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            4444 78999999999988877766655447899999999999999999999999999866

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.86  E-value=8.1e-18  Score=154.42  Aligned_cols=287  Identities=29%  Similarity=0.520  Sum_probs=213.4

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc-eeeeccCccC-CeEEEEE-CCCCc-EEEEe-eCCCeEE
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-WIGTFEGHKG-AVWSCCL-DANAL-FSASG-SADFTAK   86 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~-~~~~l~gH~~-~V~~v~~-~~~~~-~l~s~-s~Dg~v~   86 (350)
                      +.+|...+..+.|.+   .+..++.++.|+.+.+|+...+. ....+.++.. .+..+.+ .+++. +++.. ..|+.++
T Consensus        61 ~~~~~~~i~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  137 (466)
T COG2319          61 LRGHEDSITSIAFSP---DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK  137 (466)
T ss_pred             eeeccceEEEEEECC---CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence            468999999999986   78889999999999999988876 6777777544 6766666 77776 55554 4499999


Q ss_pred             EeeCCC-CCeee-eeeccccEeEEEEcCCCCeEEEeeC-CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEE
Q 018784           87 LWDALT-GDEKH-SFEHKHIVRACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (350)
Q Consensus        87 vWd~~~-~~~~~-~~~h~~~V~~~~~~~~~~~l~sg~~-d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s  163 (350)
                      +|+... ..... ...|...|..++|+|++..+++++. |+.+++|++.... .......|...+..++|.+....++++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~  216 (466)
T COG2319         138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGLLIAS  216 (466)
T ss_pred             EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcceEEEE
Confidence            999987 44433 4468899999999999998888886 9999999997632 233344578899999999544446777


Q ss_pred             EeCCCeEEEEECCCCceeE-eecCCCCeEEEEEecCCcEEE-EEcCCcEEEEECCCcce-eeeeecC-CCCceeEecCCC
Q 018784          164 CTDSGGVRLWDARSGKIVQ-TLETKSPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGL-VKGYNMP-CNTESASLEPKL  239 (350)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~-~~~~~~~-~~~~~~~~~~~~  239 (350)
                      ++.|++|++||.+.+..+. .+..+.......|++++.+++ ++.++.+++||.+.... ...+..+ .......+.+ .
T Consensus       217 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~  295 (466)
T COG2319         217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-D  295 (466)
T ss_pred             ecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-C
Confidence            7899999999999887777 455443332227899986555 55689999999986654 3333222 2223344555 5


Q ss_pred             CcEEEEecCCCeEEEEEcccCeeEEeec--CCCcCEEEEEEcCCCCEEEEe-cCCCcEEEecCCCCC
Q 018784          240 GNIFIAGGEDMWVHVFDFHTGEQIGCNK--GHHGPVHCVRFSPGGESYASG-SEDGTIRIWQTNPPN  303 (350)
Q Consensus       240 ~~~l~sg~~d~~i~v~d~~~~~~~~~~~--~h~~~v~~l~~sp~~~~lasg-s~Dg~v~vw~~~~~~  303 (350)
                      +..+++++.|+.+++||+.+........  .|...+..+.|.+++..++.+ ..|+.+++|+.....
T Consensus       296 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  362 (466)
T COG2319         296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK  362 (466)
T ss_pred             CCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence            6777778889889999998887666655  888889999994332455555 788999999987665

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.86  E-value=6.7e-20  Score=160.71  Aligned_cols=265  Identities=15%  Similarity=0.229  Sum_probs=193.5

Q ss_pred             EeCCCCeeEeeCCCCceeeeccCccC--CeEEEEECCCC-cEEEEeeCCCeEEEeeCCCC--C-eeeeeeccccEeEEEE
Q 018784           37 ASKDSSPMLRNGETGDWIGTFEGHKG--AVWSCCLDANA-LFSASGSADFTAKLWDALTG--D-EKHSFEHKHIVRACAF  110 (350)
Q Consensus        37 gs~d~~v~iw~~~~~~~~~~l~gH~~--~V~~v~~~~~~-~~l~s~s~Dg~v~vWd~~~~--~-~~~~~~h~~~V~~~~~  110 (350)
                      +|...+++|||...-+....+-.|+.  .+.+++|.... ...++.+.|..+++|.-...  + ++........-.|++.
T Consensus         8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~   87 (673)
T KOG4378|consen    8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVAC   87 (673)
T ss_pred             eccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhh
Confidence            44456789999876554444444432  38888997665 55677889999999975432  1 1111111112334444


Q ss_pred             cCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC--C
Q 018784          111 SEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK--S  188 (350)
Q Consensus       111 ~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~--~  188 (350)
                      .....++++||..++|+|||+. .+...+....|...|+.+.+...|. ++++++..|.|.|..+.++.....+...  .
T Consensus        88 ~s~S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f~~~sgq  165 (673)
T KOG4378|consen   88 ASQSLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ  165 (673)
T ss_pred             hhcceeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCccccceecCCCC
Confidence            4555899999999999999997 3455566778889999999876555 5677788899999999998877777654  4


Q ss_pred             CeEEEEEecCCcEEE--EEcCCcEEEEECCCcceeeeeec-C-CCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEE
Q 018784          189 PVTSAEVSRDGRYIT--TADGSSVKFWDANHFGLVKGYNM-P-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG  264 (350)
Q Consensus       189 ~v~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~  264 (350)
                      .+.-+.+++..+++.  ++++|.|.+||.....++..... + .....++|+|.+..+|++-+.|.+|.+||.+......
T Consensus       166 svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~  245 (673)
T KOG4378|consen  166 SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD  245 (673)
T ss_pred             eEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc
Confidence            566888998877653  45789999999987766543321 1 2234567778778999999999999999998766655


Q ss_pred             eecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCc
Q 018784          265 CNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNH  304 (350)
Q Consensus       265 ~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~  304 (350)
                      ++. ...+...++|+++|.+|+.|...|.|..||++..+.
T Consensus       246 ~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~  284 (673)
T KOG4378|consen  246 RLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA  284 (673)
T ss_pred             eee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence            554 345689999999999999999999999999874443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.86  E-value=1.7e-19  Score=163.81  Aligned_cols=306  Identities=18%  Similarity=0.275  Sum_probs=206.1

Q ss_pred             EEEecccCCCccEEEEEeCCCCeeEeeCCCC--ceeeeccCccCCeEEEEECC---CCcEEEEeeCCCeEEEeeCCCCC-
Q 018784           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETG--DWIGTFEGHKGAVWSCCLDA---NALFSASGSADFTAKLWDALTGD-   94 (350)
Q Consensus        21 ~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~--~~~~~l~gH~~~V~~v~~~~---~~~~l~s~s~Dg~v~vWd~~~~~-   94 (350)
                      |+++.+ .++..++|.|+.+..+.|+...+.  +.+..++||.+-|++++|..   +..++||+|.|..||||.+.-.. 
T Consensus       150 cL~~~~-~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~  228 (764)
T KOG1063|consen  150 CLAALK-NNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDD  228 (764)
T ss_pred             HHhhhc-cCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCC
Confidence            333444 344567788888888999886544  45668999999999999864   34689999999999999763221 


Q ss_pred             -----------------------eee---e-----eeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC-----
Q 018784           95 -----------------------EKH---S-----FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP-----  138 (350)
Q Consensus        95 -----------------------~~~---~-----~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~-----  138 (350)
                                             ...   +     ..|.+-|+++.|+|.+..|++++.|.++.+|...+.....     
T Consensus       229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vR  308 (764)
T KOG1063|consen  229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVR  308 (764)
T ss_pred             ccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEE
Confidence                                   000   0     1389999999999999999999999999999876543221     


Q ss_pred             -eeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCcee---Eeec-CCCCeEEEEEecCCcEEE-EEcCCcEEE
Q 018784          139 -REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV---QTLE-TKSPVTSAEVSRDGRYIT-TADGSSVKF  212 (350)
Q Consensus       139 -~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~---~~~~-~~~~v~~~~~~~~~~~l~-~~~~~~i~v  212 (350)
                       ...++..+....+.|+++. .++++-+.-|..++|.......-   ..+. +-..|+.+.|+|.|.+|. ++.|.+-|+
T Consensus       309 lGe~gg~a~GF~g~lw~~n~-~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRl  387 (764)
T KOG1063|consen  309 LGEVGGSAGGFWGGLWSPNS-NVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRL  387 (764)
T ss_pred             eecccccccceeeEEEcCCC-CEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceee
Confidence             1223334557788888655 56666677899999984332211   1222 235788888888887764 345665555


Q ss_pred             EECC--------------------Ccce---------------eeeee--------------------------------
Q 018784          213 WDAN--------------------HFGL---------------VKGYN--------------------------------  225 (350)
Q Consensus       213 wd~~--------------------~~~~---------------~~~~~--------------------------------  225 (350)
                      |-.-                    ....               .+.|.                                
T Consensus       388 Fa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaL  467 (764)
T KOG1063|consen  388 FARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPAL  467 (764)
T ss_pred             ecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccc
Confidence            4221                    0000               00000                                


Q ss_pred             -------c------------------------------------------------CCCC-ceeEecCCCCcEEEEecC-
Q 018784          226 -------M------------------------------------------------PCNT-ESASLEPKLGNIFIAGGE-  248 (350)
Q Consensus       226 -------~------------------------------------------------~~~~-~~~~~~~~~~~~l~sg~~-  248 (350)
                             .                                                +... ..+.. .+.+++++++.. 
T Consensus       468 GLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~-s~~gnliASaCKS  546 (764)
T KOG1063|consen  468 GLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAI-SPTGNLIASACKS  546 (764)
T ss_pred             cccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEe-cCCCCEEeehhhh
Confidence                   0                                                0000 01111 123566776653 


Q ss_pred             ----CCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccc
Q 018784          249 ----DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTD  324 (350)
Q Consensus       249 ----d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (350)
                          -..|++|+..+...+..+.+|+=.|+.|+||||+++|++.|.|.++.+|........+..           .....
T Consensus       547 ~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~-----------fa~~k  615 (764)
T KOG1063|consen  547 SLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR-----------FACLK  615 (764)
T ss_pred             CCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh-----------hcccc
Confidence                346899999998888899999999999999999999999999999999987433322221           22256


Q ss_pred             cceeeeeeEEEcccch
Q 018784          325 EVTRKIEGFHINKEGK  340 (350)
Q Consensus       325 ~~~~~i~~~~~~~~g~  340 (350)
                      .+++-|.+-.++||+.
T Consensus       616 ~HtRIIWdcsW~pde~  631 (764)
T KOG1063|consen  616 AHTRIIWDCSWSPDEK  631 (764)
T ss_pred             ccceEEEEcccCcccc
Confidence            6888888888888876

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.85  E-value=5.9e-21  Score=176.38  Aligned_cols=276  Identities=19%  Similarity=0.238  Sum_probs=203.9

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      ++||...|+|++|..   .|+++++|+.|..++||..++..++.++.||++.|+-++.+.+..++|++|.|..||+|-+.
T Consensus       186 LlgH~naVyca~fDr---tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~  262 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDR---TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP  262 (1113)
T ss_pred             HHhhhhheeeeeecc---ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence            479999999999987   89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECC-CCC--CCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC
Q 018784           92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN-RPD--APPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (350)
Q Consensus        92 ~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d  167 (350)
                      .+.++..+ .|++.|++++|+|-.    +.+.||++++||.. .+.  .+..........+.++.+. ....-+++++.|
T Consensus       263 ~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~-~~~~~f~Tgs~d  337 (1113)
T KOG0644|consen  263 DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFE-NNGDRFLTGSRD  337 (1113)
T ss_pred             CCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecc-ccccccccccCC
Confidence            98877765 699999999999965    78899999999976 111  1111111223334444443 334456788888


Q ss_pred             CeEEEEECCCCceeEeecCCCCeEEEEEecCC-cEE-EEEcCCcEEEEECCCcceeeeeecCCC-CceeEecCCCCcEEE
Q 018784          168 GGVRLWDARSGKIVQTLETKSPVTSAEVSRDG-RYI-TTADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFI  244 (350)
Q Consensus       168 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l-~~~~~~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~  244 (350)
                      +.-..|.+..-...     ...+.-+..+.+- .+. ++-.+..+.+|++.++.+..-...... .....++|.+..+..
T Consensus       338 ~ea~n~e~~~l~~~-----~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~m  412 (1113)
T KOG0644|consen  338 GEARNHEFEQLAWR-----SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAM  412 (1113)
T ss_pred             cccccchhhHhhhh-----ccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhh
Confidence            88888875432110     0011111111111 222 233455788899888766554444433 345667788888999


Q ss_pred             EecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          245 AGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       245 sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      +++.||...|||+-.|.++.....-...+..-+||++|+.++..-.-|.++|....
T Consensus       413 sag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~g  468 (1113)
T KOG0644|consen  413 SAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTG  468 (1113)
T ss_pred             hccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccC
Confidence            99999999999999888766554335567788999999988887777888888654

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.85  E-value=9.7e-20  Score=164.02  Aligned_cols=280  Identities=20%  Similarity=0.229  Sum_probs=180.8

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeee--ccCccCCeEEEEECCC-CcEEEEeeCCCeEEEee
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT--FEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWD   89 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~--l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~vWd   89 (350)
                      ..|...|.++.+-|   .-..|++++.|.+++.||++..++...  +-||+.+|.++||.+. ...|+||+.||.|.|||
T Consensus        97 ~aH~nAifDl~wap---ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD  173 (720)
T KOG0321|consen   97 LAHKNAIFDLKWAP---GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD  173 (720)
T ss_pred             ccccceeEeeccCC---CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence            47999999998776   446899999999999999999988876  8999999999999875 56899999999999999


Q ss_pred             CCCCCe-----------------------e-----eeeeccccEeE---EEEcCCCCeEEEeeC-CCeEEEEECCCCCCC
Q 018784           90 ALTGDE-----------------------K-----HSFEHKHIVRA---CAFSEDTHLLLTGGF-EKILRIFDLNRPDAP  137 (350)
Q Consensus        90 ~~~~~~-----------------------~-----~~~~h~~~V~~---~~~~~~~~~l~sg~~-d~~v~vwd~~~~~~~  137 (350)
                      +.-...                       +     .-..+.+.+.+   +-+..|...||++|. |+.|+|||+.+.+..
T Consensus       174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~  253 (720)
T KOG0321|consen  174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA  253 (720)
T ss_pred             EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence            632110                       0     00113334444   445567778888877 999999999875543


Q ss_pred             Ceee-------cCC---CCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCc--eeEeecCC---CCeEEEEEecCCcEE
Q 018784          138 PREV-------GNS---SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK--IVQTLETK---SPVTSAEVSRDGRYI  202 (350)
Q Consensus       138 ~~~~-------~~~---~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~--~~~~~~~~---~~v~~~~~~~~~~~l  202 (350)
                      .+..       ..+   .-.+.++.....+.+++++|. |+.|++|++++..  ++..+.+.   .--..-..+|++.++
T Consensus       254 ~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l  332 (720)
T KOG0321|consen  254 YRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL  332 (720)
T ss_pred             cccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence            2211       111   112333333344678899998 7899999998653  33333221   112233467999888


Q ss_pred             EEE-cCCcEEEEECCCcceee-eeecCCC-CceeEecCCCCcEEEEecCCCeEEEEEcccCee--------------EEe
Q 018784          203 TTA-DGSSVKFWDANHFGLVK-GYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ--------------IGC  265 (350)
Q Consensus       203 ~~~-~~~~i~vwd~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~--------------~~~  265 (350)
                      +++ .+....+|.+.+....- .+..+.. ...+.+.+..-.-+++++.|..+++|++..+-.              ...
T Consensus       333 ~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~r  412 (720)
T KOG0321|consen  333 LSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRR  412 (720)
T ss_pred             eccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhh
Confidence            765 57889999887654321 1111111 223334443445567779999999999865421              123


Q ss_pred             ecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          266 NKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       266 ~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      +.+|.-.+..+-++-.+.+....  .+..++|.
T Consensus       413 fk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~s  443 (720)
T KOG0321|consen  413 FKGHLPQVLNVNSSLRKTYKDPR--EGMNRISS  443 (720)
T ss_pred             hhccccccccccccccccccchh--hhcccccc
Confidence            45666556555555444333322  34455554

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.85  E-value=3e-19  Score=153.13  Aligned_cols=289  Identities=18%  Similarity=0.233  Sum_probs=195.1

Q ss_pred             eeccC-CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC---------ceeeeccCccCCeEEEEECCCCcEEEEeeC
Q 018784           12 CHGHS-RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---------DWIGTFEGHKGAVWSCCLDANALFSASGSA   81 (350)
Q Consensus        12 ~~gH~-~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~---------~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~   81 (350)
                      .+=|. .||..+.|...+  ...+|||+.|..|+||.+..+         +.+..|.+|..+|+++.|+|+|.+||||+.
T Consensus         8 i~wH~~~pv~s~dfq~n~--~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D   85 (434)
T KOG1009|consen    8 ISWHDHEPVYSVDFQKNS--LNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGD   85 (434)
T ss_pred             EEecCCCceEEEEeccCc--ccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCC
Confidence            34444 389999998733  238999999999999996542         345678999999999999999999999999


Q ss_pred             CCeEEEeeCC--------C----CCeee----ee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCC
Q 018784           82 DFTAKLWDAL--------T----GDEKH----SF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS  144 (350)
Q Consensus        82 Dg~v~vWd~~--------~----~~~~~----~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~  144 (350)
                      +|.|.+|...        +    .++..    .+ .|...++.++|+|++.++++++-|.++++||+..+... .....|
T Consensus        86 ~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~-~~~~dh  164 (434)
T KOG1009|consen   86 GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLL-AILDDH  164 (434)
T ss_pred             CceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeE-eecccc
Confidence            9999999754        2    01111    11 38888999999999999999999999999999876543 344667


Q ss_pred             CCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec--------------------C----CCCeEEEEEecCCc
Q 018784          145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--------------------T----KSPVTSAEVSRDGR  200 (350)
Q Consensus       145 ~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~--------------------~----~~~v~~~~~~~~~~  200 (350)
                      ...+.-++|.+-.+ .+++-+.|...+.+.+...+.+....                    +    ..-...++|+|+|.
T Consensus       165 ~~yvqgvawDpl~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~  243 (434)
T KOG1009|consen  165 EHYVQGVAWDPLNQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS  243 (434)
T ss_pred             ccccceeecchhhh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc
Confidence            78888898875443 45555566655555554332222111                    0    11234567899999


Q ss_pred             EEEEEc-----CCcE-----EEEECCCc-ceeeeeecCCCC------------------ceeEecCCCCcEEEEecCCCe
Q 018784          201 YITTAD-----GSSV-----KFWDANHF-GLVKGYNMPCNT------------------ESASLEPKLGNIFIAGGEDMW  251 (350)
Q Consensus       201 ~l~~~~-----~~~i-----~vwd~~~~-~~~~~~~~~~~~------------------~~~~~~~~~~~~l~sg~~d~~  251 (350)
                      ++++..     ++.+     .+|+-... +++..+..+...                  ....+.-+.+-+++.++ .+.
T Consensus       244 llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~s  322 (434)
T KOG1009|consen  244 LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNS  322 (434)
T ss_pred             EEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cce
Confidence            887532     2222     34432211 111111111100                  00011122334455555 457


Q ss_pred             EEEEEcccCeeEEeec-CCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784          252 VHVFDFHTGEQIGCNK-GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       252 i~v~d~~~~~~~~~~~-~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~  305 (350)
                      |++||..+..++.... -|-..|+.++|+++|.+|+..|.||...+-...+.++.
T Consensus       323 vyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg  377 (434)
T KOG1009|consen  323 VYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG  377 (434)
T ss_pred             EEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence            9999999888877664 58889999999999999999999998877666554443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=9e-19  Score=165.80  Aligned_cols=282  Identities=18%  Similarity=0.299  Sum_probs=193.7

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCcc---CCeEEEEE--CCCCcEEEEeeCCCeEEEeeC
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHK---GAVWSCCL--DANALFSASGSADFTAKLWDA   90 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~---~~V~~v~~--~~~~~~l~s~s~Dg~v~vWd~   90 (350)
                      ..+-..+.|+|++|   .++++.....|++||-+.++.+.-|..+.   ..|..+.+  ..|..++.+|+.||.||||+-
T Consensus      1064 ~~~pk~~~~hpf~p---~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEP---QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred             CCCCceeeecCCCc---eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence            33566778999887   68887767789999999999988776543   45777776  346678899999999999974


Q ss_pred             CCC---Ce--eeeee--------ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCC
Q 018784           91 LTG---DE--KHSFE--------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD  157 (350)
Q Consensus        91 ~~~---~~--~~~~~--------h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (350)
                      ...   +.  +.-+.        ..+.=.-++|..+..+|+++|.-+.|||||+.+..............++++......
T Consensus      1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred             cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence            322   11  11111        111114457888777788878799999999976443333333455667777665556


Q ss_pred             CcEEEEEeCCCeEEEEECCCCce---eEeecC-C--CCeEEEEEecCC--cEEEEEcCCcEEEEECCCcceeeeeecCC-
Q 018784          158 QTILSSCTDSGGVRLWDARSGKI---VQTLET-K--SPVTSAEVSRDG--RYITTADGSSVKFWDANHFGLVKGYNMPC-  228 (350)
Q Consensus       158 ~~~~~s~~~dg~i~iwd~~~~~~---~~~~~~-~--~~v~~~~~~~~~--~~l~~~~~~~i~vwd~~~~~~~~~~~~~~-  228 (350)
                      +.++++|-.||.|++||.|....   +..... .  .+|..+.+.++|  ++++++.+|.|++||+|.......+.... 
T Consensus      1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred             CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence            78899999999999999986532   333332 2  348888888765  56677789999999999742211111111 


Q ss_pred             ---C-CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCC-------CcCEEEEEEcCCCCEEEEecCCCcEEEe
Q 018784          229 ---N-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGH-------HGPVHCVRFSPGGESYASGSEDGTIRIW  297 (350)
Q Consensus       229 ---~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~lasgs~Dg~v~vw  297 (350)
                         . ..+.........++++|+. +.|+||++. |+.+..++.+       .+.+.|++|+|..-++|.|+.|.+|.||
T Consensus      1301 ~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred             cccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence               1 1222223334678999988 999999985 4444333322       3568999999999999999999999999


Q ss_pred             cCCCC
Q 018784          298 QTNPP  302 (350)
Q Consensus       298 ~~~~~  302 (350)
                      ...++
T Consensus      1379 s~~k~ 1383 (1387)
T KOG1517|consen 1379 SCEKP 1383 (1387)
T ss_pred             ecCCc
Confidence            76544

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.1e-18  Score=151.83  Aligned_cols=238  Identities=16%  Similarity=0.274  Sum_probs=184.2

Q ss_pred             CCeEEEEECCCCcEEEEeeCCCeEEEeeCCC--CCeeeeee-ccccEeEEEEcCCCC-eEEEeeCCCeEEEEECCCCCCC
Q 018784           62 GAVWSCCLDANALFSASGSADFTAKLWDALT--GDEKHSFE-HKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAP  137 (350)
Q Consensus        62 ~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~--~~~~~~~~-h~~~V~~~~~~~~~~-~l~sg~~d~~v~vwd~~~~~~~  137 (350)
                      +.|+++.|+|...++.++|.|++++++.+..  ...+..+. ...++.++.|+|+|+ .+++++.-..+.+||+.+.+..
T Consensus       214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~  293 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT  293 (514)
T ss_pred             CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccc
Confidence            6799999999999999999999999998743  22333333 356789999999999 8899999999999999764422


Q ss_pred             C-ee-ecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEE-EEcCCcEEEEE
Q 018784          138 P-RE-VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT-TADGSSVKFWD  214 (350)
Q Consensus       138 ~-~~-~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~i~vwd  214 (350)
                      . .. .+.....+.....+|. +.+++..+..|.|.+--..+++.+..++..+.+..++|+.+++.|. ++.+|.|.+||
T Consensus       294 k~~~~~g~e~~~~e~FeVShd-~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~n  372 (514)
T KOG2055|consen  294 KLKPPYGVEEKSMERFEVSHD-SNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWN  372 (514)
T ss_pred             cccCCCCcccchhheeEecCC-CCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEe
Confidence            1 11 1222334555555554 4467777888999999999999999999999999999999998664 55678999999


Q ss_pred             CCCcceeeeeecCCCCceeEec-CCCCcEEEEecCCCeEEEEEccc------CeeEEeecCCCcCEEEEEEcCCCCEEEE
Q 018784          215 ANHFGLVKGYNMPCNTESASLE-PKLGNIFIAGGEDMWVHVFDFHT------GEQIGCNKGHHGPVHCVRFSPGGESYAS  287 (350)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~sg~~d~~i~v~d~~~------~~~~~~~~~h~~~v~~l~~sp~~~~las  287 (350)
                      +++..+++.+.-.......+++ ..++.+||+|+..|.|.|||..+      .+++.++..-...|++|.|+|+.++||.
T Consensus       373 l~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAi  452 (514)
T KOG2055|consen  373 LRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAI  452 (514)
T ss_pred             cCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhh
Confidence            9999888887665544333332 33578999999999999999643      3456667777889999999999999887


Q ss_pred             ecC--CCcEEEecCC
Q 018784          288 GSE--DGTIRIWQTN  300 (350)
Q Consensus       288 gs~--Dg~v~vw~~~  300 (350)
                      +|.  +..+|+--+.
T Consensus       453 aS~~~knalrLVHvP  467 (514)
T KOG2055|consen  453 ASRVKKNALRLVHVP  467 (514)
T ss_pred             hhhccccceEEEecc
Confidence            774  5677776553

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=8e-18  Score=152.76  Aligned_cols=240  Identities=17%  Similarity=0.247  Sum_probs=178.5

Q ss_pred             EeeccCC-ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784           11 VCHGHSR-PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (350)
Q Consensus        11 ~~~gH~~-~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd   89 (350)
                      ++.||++ .|-+++|+    +|..|.|.+-+|+|.-||+.+++.+..++.-.++||+++.+|....++.|+.||.+...+
T Consensus        63 vi~g~~drsIE~L~W~----e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s  138 (691)
T KOG2048|consen   63 VIHGPEDRSIESLAWA----EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFS  138 (691)
T ss_pred             EEecCCCCceeeEEEc----cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEe
Confidence            4566665 78899998    566789999999999999999999999999999999999999999999999999887777


Q ss_pred             CCCCCeeee--e-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCe------ee-cCCCCcEEEEEEeCCCCc
Q 018784           90 ALTGDEKHS--F-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR------EV-GNSSGSIRTVAWLHSDQT  159 (350)
Q Consensus        90 ~~~~~~~~~--~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~------~~-~~~~~~v~~~~~~~~~~~  159 (350)
                      ...++....  + ..++.|.+++|+|++..+++|+.||.|++||+.++.....      .. .....-|+++.+..+  .
T Consensus       139 ~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd--~  216 (691)
T KOG2048|consen  139 IGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD--S  216 (691)
T ss_pred             cCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec--C
Confidence            766654332  2 3568899999999999999999999999999987654321      11 123456888888843  3


Q ss_pred             EEEEEeCCCeEEEEECCCCceeEeec-CCCCeEEEEEecCCcEEE-EEcCCcEEEEECCCcce--e--eeeecCCCC-ce
Q 018784          160 ILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGL--V--KGYNMPCNT-ES  232 (350)
Q Consensus       160 ~~~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~--~--~~~~~~~~~-~~  232 (350)
                      .+++|...|+|++||...+..+.... +...|.+++.++++..+. ++-|+.|.-|-..+.+.  +  .....+.+. .+
T Consensus       217 tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs  296 (691)
T KOG2048|consen  217 TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRS  296 (691)
T ss_pred             cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCccccee
Confidence            57788888999999999998877766 457899999999876654 45576655554433221  1  111222222 22


Q ss_pred             eEecCCCCcEEEEecCCCeEEEEEccc
Q 018784          233 ASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (350)
Q Consensus       233 ~~~~~~~~~~l~sg~~d~~i~v~d~~~  259 (350)
                      ....   +..+++|+.|..+.+-..+.
T Consensus       297 ~av~---~~~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  297 MAVI---ENALISGGRDFTLAICSSRE  320 (691)
T ss_pred             eeee---cceEEecceeeEEEEccccc
Confidence            2222   35899999999988876554

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=9.5e-19  Score=145.62  Aligned_cols=245  Identities=17%  Similarity=0.223  Sum_probs=176.1

Q ss_pred             eEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeec
Q 018784           64 VWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG  142 (350)
Q Consensus        64 V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~  142 (350)
                      ..|+.|++-|.++|.|..||.|.|||..|......+ .|..+|.+++|+++|..|+|+|.|..|++||+.++....+.  
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri--  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI--  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE--
Confidence            678899999999999999999999999988755555 69999999999999999999999999999999988744332  


Q ss_pred             CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec--CC----CCeEEEEEecCCcEEEEEc-CCcEEEEEC
Q 018784          143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--TK----SPVTSAEVSRDGRYITTAD-GSSVKFWDA  215 (350)
Q Consensus       143 ~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~--~~----~~v~~~~~~~~~~~l~~~~-~~~i~vwd~  215 (350)
                      ....+|+.+.|.|...+.++.+-.+..-.+-++..++. ..+.  ..    .......|.+.|+++.++. -|.+.++|.
T Consensus       104 rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a  182 (405)
T KOG1273|consen  104 RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA  182 (405)
T ss_pred             EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence            24567889999887666655554444444555543221 1111  11    1122235788899998876 478999999


Q ss_pred             CCcceeeeeecCC-CCceeEecCCCCcEEEEecCCCeEEEEEcccCee------E---EeecC--CCcCEEEEEEcCCCC
Q 018784          216 NHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ------I---GCNKG--HHGPVHCVRFSPGGE  283 (350)
Q Consensus       216 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~------~---~~~~~--h~~~v~~l~~sp~~~  283 (350)
                      .+.+++..+.... ........+..++.|+..+.|+.||.|++..-..      +   +.++.  ..-.=.+++|+.+|.
T Consensus       183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge  262 (405)
T KOG1273|consen  183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE  262 (405)
T ss_pred             chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence            9998887776654 2222333445689999999999999999863211      1   11110  111235789999999


Q ss_pred             EEEEec-CCCcEEEecCCCCCcccCCCCC
Q 018784          284 SYASGS-EDGTIRIWQTNPPNHEENHSGT  311 (350)
Q Consensus       284 ~lasgs-~Dg~v~vw~~~~~~~~~~~~~~  311 (350)
                      |++.|+ .-..++||....+.+....+|.
T Consensus       263 Yv~a~s~~aHaLYIWE~~~GsLVKILhG~  291 (405)
T KOG1273|consen  263 YVCAGSARAHALYIWEKSIGSLVKILHGT  291 (405)
T ss_pred             EEEeccccceeEEEEecCCcceeeeecCC
Confidence            987666 4568999998888877666554

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.84  E-value=8.2e-19  Score=144.39  Aligned_cols=274  Identities=21%  Similarity=0.235  Sum_probs=187.1

Q ss_pred             eEeeccCCceeEEEecccCCCccEEEEEeCCC-------CeeEeeCCC---------Cceeeecc-CccCCeEEEEECCC
Q 018784           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDS-------SPMLRNGET---------GDWIGTFE-GHKGAVWSCCLDAN   72 (350)
Q Consensus        10 ~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~-------~v~iw~~~~---------~~~~~~l~-gH~~~V~~v~~~~~   72 (350)
                      .++.-|.+.|+.++-+|.  +.++|+|.-+|-       .+-||.+..         .+++..|. .|-+.|.|+.|.|+
T Consensus        57 kvf~h~agEvw~las~P~--d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn  134 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPF--DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN  134 (370)
T ss_pred             hhhhcCCcceehhhcCCC--CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence            345678899999999985  456888876532       256898532         23444554 46679999999999


Q ss_pred             CcEEEEeeCCCeEEEeeCCCCCe-eeee------eccccEeEEEEcC--CCCeEEEeeCCCeEEEEECCCCCCCCeeecC
Q 018784           73 ALFSASGSADFTAKLWDALTGDE-KHSF------EHKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVGN  143 (350)
Q Consensus        73 ~~~l~s~s~Dg~v~vWd~~~~~~-~~~~------~h~~~V~~~~~~~--~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~  143 (350)
                      +..+++- .|..|.+|++..+.. ...+      .+.....+-+|+|  +++.+++. .|+++..||+++..........
T Consensus       135 s~klasm-~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dA  212 (370)
T KOG1007|consen  135 SDKLASM-DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDA  212 (370)
T ss_pred             CCeeEEe-ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhh
Confidence            9888764 499999999977654 2222      2455677778888  77777765 4889999999876665555567


Q ss_pred             CCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC-ceeEeecCC-CCeEEEEEecCC--cEEEEEcCCcEEEEECCCcc
Q 018784          144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETK-SPVTSAEVSRDG--RYITTADGSSVKFWDANHFG  219 (350)
Q Consensus       144 ~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~v~~~~~~~~~--~~l~~~~~~~i~vwd~~~~~  219 (350)
                      |...++.+.|.|..+.++++|++||.|+|||.|.. .++..+..+ .-+.++.|+|..  .+|.+++|..|.+|-...-.
T Consensus       213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svS  292 (370)
T KOG1007|consen  213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVS  292 (370)
T ss_pred             hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccc
Confidence            77889999999999999999999999999999875 466677655 468888998854  34456678888888764322


Q ss_pred             eeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCE-EEEecCCCcEEEec
Q 018784          220 LVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGES-YASGSEDGTIRIWQ  298 (350)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~-lasgs~Dg~v~vw~  298 (350)
                      ....+........   .+         ..|..=++=-+. ...+.++..|+..|++++||.-.+. |||-|.||++.|=.
T Consensus       293 SE~qi~~~~dese---~e---------~~dseer~kpL~-dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~  359 (370)
T KOG1007|consen  293 SEQQIEFEDDESE---SE---------DEDSEERVKPLQ-DGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISS  359 (370)
T ss_pred             ccccccccccccc---Cc---------chhhHHhccccc-ccccccccccccceEEEeeccCCCeeEEEeccCceEEeec
Confidence            1111111000000   00         000000000001 1234456789999999999987766 68999999999876


Q ss_pred             CC
Q 018784          299 TN  300 (350)
Q Consensus       299 ~~  300 (350)
                      ++
T Consensus       360 V~  361 (370)
T KOG1007|consen  360 VP  361 (370)
T ss_pred             CC
Confidence            53

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=2.1e-18  Score=153.15  Aligned_cols=210  Identities=20%  Similarity=0.260  Sum_probs=157.3

Q ss_pred             ccccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeec-cCccCCeEEEEECC--CCcEEEEee
Q 018784            4 RKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF-EGHKGAVWSCCLDA--NALFSASGS   80 (350)
Q Consensus         4 ~~~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l-~gH~~~V~~v~~~~--~~~~l~s~s   80 (350)
                      |++....++.||++=|.++.|+.   +|.+|++||.|--+.|||.-..++++.+ .||++.|.++.|-|  ...+++||.
T Consensus        38 rrL~lE~eL~GH~GCVN~LeWn~---dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA  114 (758)
T KOG1310|consen   38 RRLDLEAELTGHTGCVNCLEWNA---DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA  114 (758)
T ss_pred             hhcchhhhhccccceecceeecC---CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc
Confidence            56777778899999999998886   9999999999999999999888888776 58999999999976  567899999


Q ss_pred             CCCeEEEeeCCCCCe----------eeee-eccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCCCCeeec------
Q 018784           81 ADFTAKLWDALTGDE----------KHSF-EHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVG------  142 (350)
Q Consensus        81 ~Dg~v~vWd~~~~~~----------~~~~-~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~~~~~------  142 (350)
                      .|..|+++|+...+.          ...+ .|...|.-++-.|++ +.+.+++.||+++-+|+..+..-.....      
T Consensus       115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~  194 (758)
T KOG1310|consen  115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILV  194 (758)
T ss_pred             CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHH
Confidence            999999999874221          1111 388889999999988 8899999999999999976432111100      


Q ss_pred             ---CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC--------c----------eeEeecC-------------CC
Q 018784          143 ---NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG--------K----------IVQTLET-------------KS  188 (350)
Q Consensus       143 ---~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~--------~----------~~~~~~~-------------~~  188 (350)
                         ..--...++..+|....+++.|+.|-..++||.|..        .          ++.-+..             ..
T Consensus       195 ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~  274 (758)
T KOG1310|consen  195 NYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYIT  274 (758)
T ss_pred             HhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccccccee
Confidence               011235677788889999999999999999995421        1          1111110             11


Q ss_pred             CeEEEEEecCCcEE-EEEcCCcEEEEECC
Q 018784          189 PVTSAEVSRDGRYI-TTADGSSVKFWDAN  216 (350)
Q Consensus       189 ~v~~~~~~~~~~~l-~~~~~~~i~vwd~~  216 (350)
                      .++-+.|+|+|.-| +.-.+-.|.++|+.
T Consensus       275 ~~t~vtfnpNGtElLvs~~gEhVYlfdvn  303 (758)
T KOG1310|consen  275 CCTYVTFNPNGTELLVSWGGEHVYLFDVN  303 (758)
T ss_pred             eeEEEEECCCCcEEEEeeCCeEEEEEeec
Confidence            25677899998644 44455578888754

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.83  E-value=2.6e-17  Score=148.02  Aligned_cols=266  Identities=12%  Similarity=0.193  Sum_probs=172.5

Q ss_pred             EEEEeCCCCeeEeeCCC-Cc--eeeeccCccCCeEEEEECCCCcEEEEe-eCCCeEEEeeCC-CCCe--eeeeeccccEe
Q 018784           34 LVSASKDSSPMLRNGET-GD--WIGTFEGHKGAVWSCCLDANALFSASG-SADFTAKLWDAL-TGDE--KHSFEHKHIVR  106 (350)
Q Consensus        34 lasgs~d~~v~iw~~~~-~~--~~~~l~gH~~~V~~v~~~~~~~~l~s~-s~Dg~v~vWd~~-~~~~--~~~~~h~~~V~  106 (350)
                      .++...|+.|++|++.+ ++  .+..+. +.+....++++|++++|+.+ ..++.|.+|++. .+..  .........+.
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~   83 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT   83 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence            34457789999999864 43  445554 23456678999999977554 568999999986 2322  12223334577


Q ss_pred             EEEEcCCCCeEEEeeC-CCeEEEEECCCCCCCCee--ecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeE-
Q 018784          107 ACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPRE--VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ-  182 (350)
Q Consensus       107 ~~~~~~~~~~l~sg~~-d~~v~vwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~-  182 (350)
                      .++|+|++++|++++. ++.|.+|++.........  ...+......+++.++++.++++...++.|.+||+.+...+. 
T Consensus        84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~  163 (330)
T PRK11028         84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA  163 (330)
T ss_pred             EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence            8999999999888764 889999998643221111  111223456677777777777888888999999997633221 


Q ss_pred             ------eecCCCCeEEEEEecCCcEEEEEc--CCcEEEEECCC--c--ceeeeeec-CC------CCceeEecCCCCcEE
Q 018784          183 ------TLETKSPVTSAEVSRDGRYITTAD--GSSVKFWDANH--F--GLVKGYNM-PC------NTESASLEPKLGNIF  243 (350)
Q Consensus       183 ------~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~vwd~~~--~--~~~~~~~~-~~------~~~~~~~~~~~~~~l  243 (350)
                            ..........+.|+|+++++.+.+  ++.|.+||+..  .  ..+..+.. +.      ....+.+.| +++++
T Consensus       164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~l  242 (330)
T PRK11028        164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHL  242 (330)
T ss_pred             cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEE
Confidence                  122234567889999999886654  67999999863  2  22333221 11      111244555 46655


Q ss_pred             EEe-cCCCeEEEEEcccCeeEEeecCCC---cCEEEEEEcCCCCEEEEecC-CCcEEEecCCC
Q 018784          244 IAG-GEDMWVHVFDFHTGEQIGCNKGHH---GPVHCVRFSPGGESYASGSE-DGTIRIWQTNP  301 (350)
Q Consensus       244 ~sg-~~d~~i~v~d~~~~~~~~~~~~h~---~~v~~l~~sp~~~~lasgs~-Dg~v~vw~~~~  301 (350)
                      .++ ..++.|.+|++........+.++.   .....++|+|+|++|+++.. +++|.+|+++.
T Consensus       243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            555 457899999986533211222221   24567999999999886665 89999998753

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=4.7e-18  Score=141.05  Aligned_cols=217  Identities=17%  Similarity=0.324  Sum_probs=148.0

Q ss_pred             cCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeee----e-eccccEeEEEEc-C-CCCeEEEeeCCCeEEEEE
Q 018784           58 EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS----F-EHKHIVRACAFS-E-DTHLLLTGGFEKILRIFD  130 (350)
Q Consensus        58 ~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~----~-~h~~~V~~~~~~-~-~~~~l~sg~~d~~v~vwd  130 (350)
                      .+|.+-|.++.|++.|+.+||+|.|++|+|||.........    . .|.+.|..+.|. | .|+.+|+++.|++++||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            57999999999999999999999999999999754432222    2 488999999885 4 689999999999999996


Q ss_pred             CC--CCCC------CCeeecCCCCcEEEEEEeCCC-CcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcE
Q 018784          131 LN--RPDA------PPREVGNSSGSIRTVAWLHSD-QTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRY  201 (350)
Q Consensus       131 ~~--~~~~------~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  201 (350)
                      -.  +.+.      ....+......|+.+.|.|.. +..+++++.||++|||+.-....+.......++..+ ..|-++.
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~-~~pp~~~  168 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV-IDPPGKN  168 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc-cCCcccc
Confidence            41  1111      112334567789999998754 567899999999999987654333333222222111 1111110


Q ss_pred             EEEEcCCcEEEEECCCcceeeeeecCCCCceeEecC--CCCcEEEEecCC-----CeEEEEEcccC----eeEEeecCCC
Q 018784          202 ITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEP--KLGNIFIAGGED-----MWVHVFDFHTG----EQIGCNKGHH  270 (350)
Q Consensus       202 l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~sg~~d-----~~i~v~d~~~~----~~~~~~~~h~  270 (350)
                      .                       .  ...++++++  ....+|++|+.+     +.++||....+    ..+..+.+|.
T Consensus       169 ~-----------------------~--~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~  223 (361)
T KOG2445|consen  169 K-----------------------Q--PCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT  223 (361)
T ss_pred             c-----------------------C--cceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC
Confidence            0                       0  001111111  123566777665     46778765433    2456778999


Q ss_pred             cCEEEEEEcCCC----CEEEEecCCCcEEEecCCC
Q 018784          271 GPVHCVRFSPGG----ESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       271 ~~v~~l~~sp~~----~~lasgs~Dg~v~vw~~~~  301 (350)
                      .+|++++|.|+-    .+||+++.|| |+||++..
T Consensus       224 dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~  257 (361)
T KOG2445|consen  224 DPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV  257 (361)
T ss_pred             CcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence            999999999972    5689999999 99999864

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=4e-17  Score=131.48  Aligned_cols=262  Identities=15%  Similarity=0.221  Sum_probs=187.7

Q ss_pred             cCCCccEEEEEeCCCCeeEeeCCC----------CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe-
Q 018784           27 ITPDGFFLVSASKDSSPMLRNGET----------GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE-   95 (350)
Q Consensus        27 ~s~dg~~lasgs~d~~v~iw~~~~----------~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~-   95 (350)
                      ++|.+++|+.|+.+|+|.+..+.+          ...+....+|.++|+.++|.  ..+|.++ .||.|+=|.-..... 
T Consensus        18 ~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~-gdG~V~gw~W~E~~es   94 (325)
T KOG0649|consen   18 ISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG-GDGLVYGWEWNEEEES   94 (325)
T ss_pred             hCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeec-cCceEEEeeehhhhhh
Confidence            456899999999999999877532          23345668999999999997  3455555 469999997533221 


Q ss_pred             ---eeeee-----cc-----ccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEE
Q 018784           96 ---KHSFE-----HK-----HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS  162 (350)
Q Consensus        96 ---~~~~~-----h~-----~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  162 (350)
                         +..+.     |.     ..|+++-..|..+-++.++.|+.+.-||++++... +....|...+.++.-.. ....++
T Consensus        95 ~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~-r~~rGHtDYvH~vv~R~-~~~qil  172 (325)
T KOG0649|consen   95 LATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQ-REYRGHTDYVHSVVGRN-ANGQIL  172 (325)
T ss_pred             ccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEE-EEEcCCcceeeeeeecc-cCccee
Confidence               11111     22     34788999998888888889999999999987643 45567888888887533 334577


Q ss_pred             EEeCCCeEEEEECCCCceeEeecCCC---------CeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCcee
Q 018784          163 SCTDSGGVRLWDARSGKIVQTLETKS---------PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESA  233 (350)
Q Consensus       163 s~~~dg~i~iwd~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~  233 (350)
                      +|++||++|+||+++++++..+....         .-.-.+..-+..+++++.+..+.+|.++...+...+..+.....+
T Consensus       173 sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpipa~v~~v  252 (325)
T KOG0649|consen  173 SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIPARVHLV  252 (325)
T ss_pred             ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEecccceeEe
Confidence            99999999999999999998886421         111144556678999999999999999999988888888777777


Q ss_pred             EecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCC-CEEEEecCCCcEEEe
Q 018784          234 SLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGG-ESYASGSEDGTIRIW  297 (350)
Q Consensus       234 ~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~-~~lasgs~Dg~v~vw  297 (350)
                      .|.   ...++++++.+.+.-|.+. |.........+...++..++-.. +++-.++..+.+.|.
T Consensus       253 ~F~---~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  253 DFV---DDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             eee---cceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            765   4577888888889988874 34333333333345666665332 445556666667665

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.81  E-value=2.1e-19  Score=150.21  Aligned_cols=205  Identities=26%  Similarity=0.384  Sum_probs=151.9

Q ss_pred             cccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeec---cCccCCeEEEEECCCCcEEEEeeC
Q 018784            5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF---EGHKGAVWSCCLDANALFSASGSA   81 (350)
Q Consensus         5 ~~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l---~gH~~~V~~v~~~~~~~~l~s~s~   81 (350)
                      ++-+.+  +||...|.++.|.|-.|  .+|+++|.|.+||||++++..++..|   +||.+.|.++.|++++.+++|+|.
T Consensus       126 ~~~~~~--~ghG~sINeik~~p~~~--qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGm  201 (385)
T KOG1034|consen  126 QCSKNY--RGHGGSINEIKFHPDRP--QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGM  201 (385)
T ss_pred             hhccce--eccCccchhhhcCCCCC--cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCC
Confidence            344444  79999999999999544  49999999999999999999998876   679999999999999999999999


Q ss_pred             CCeEEEeeCCCCCeee-------------------------ee----eccccEeEEEEcCCCCeEEEeeCCCeEEEEECC
Q 018784           82 DFTAKLWDALTGDEKH-------------------------SF----EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN  132 (350)
Q Consensus        82 Dg~v~vWd~~~~~~~~-------------------------~~----~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~  132 (350)
                      |.++++|++...+...                         .+    .|.+.|.|+.|-  |.++++=|-++.|..|...
T Consensus       202 Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pg  279 (385)
T KOG1034|consen  202 DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPG  279 (385)
T ss_pred             cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecc
Confidence            9999999986321100                         00    266667777665  5789998889999999863


Q ss_pred             CCCCC------C-------eeecCCCCcEEEEEEe-CCCCcEEEEEeCCCeEEEEECCCCcee--Eeec---CCCCeEEE
Q 018784          133 RPDAP------P-------REVGNSSGSIRTVAWL-HSDQTILSSCTDSGGVRLWDARSGKIV--QTLE---TKSPVTSA  193 (350)
Q Consensus       133 ~~~~~------~-------~~~~~~~~~v~~~~~~-~~~~~~~~s~~~dg~i~iwd~~~~~~~--~~~~---~~~~v~~~  193 (350)
                      +-...      .       ....-..+.++.+.|. .+.+.+++.|...|+|.+||++...+.  .++.   ....|...
T Consensus       280 kl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~  359 (385)
T KOG1034|consen  280 KLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQT  359 (385)
T ss_pred             hhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeee
Confidence            21111      0       0111123445555553 345678888889999999999887653  2222   23568899


Q ss_pred             EEecCCcEEE-EEcCCcEEEEEC
Q 018784          194 EVSRDGRYIT-TADGSSVKFWDA  215 (350)
Q Consensus       194 ~~~~~~~~l~-~~~~~~i~vwd~  215 (350)
                      +|+.|+.+|+ ..+++.|.-||-
T Consensus       360 sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  360 SFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             eecccCcEEEEEeCCCcEEEEEe
Confidence            9999998875 457788888884

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.81  E-value=3.6e-18  Score=148.54  Aligned_cols=247  Identities=17%  Similarity=0.163  Sum_probs=176.6

Q ss_pred             ceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccC--ccCCeEEEEECCCCcEEEEeeCCCeE
Q 018784            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG--HKGAVWSCCLDANALFSASGSADFTA   85 (350)
Q Consensus         8 ~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~g--H~~~V~~v~~~~~~~~l~s~s~Dg~v   85 (350)
                      .-.++.+|..+|.++.|+|..++  .+.+.|.||++++-|+++...-..+.-  -......+.|+.+...++.+..=|..
T Consensus       226 ~v~~f~~hs~~Vs~l~F~P~n~s--~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f  303 (498)
T KOG4328|consen  226 GVYLFTPHSGPVSGLKFSPANTS--QIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNF  303 (498)
T ss_pred             ceEEeccCCccccceEecCCChh--heeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccce
Confidence            34557899999999999996654  788899999999999987654333332  33344566677777777777777899


Q ss_pred             EEeeCCCCCe-eeee-eccccEeEEEEcCC-CCeEEEeeCCCeEEEEECCCCCCCC---eeecCCCCcEEEEEEeCCCCc
Q 018784           86 KLWDALTGDE-KHSF-EHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPP---REVGNSSGSIRTVAWLHSDQT  159 (350)
Q Consensus        86 ~vWd~~~~~~-~~~~-~h~~~V~~~~~~~~-~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~  159 (350)
                      -+||..+... ...+ -|...|++++++|. ..+|+|+|-|++++|||+..-....   .....|...|.+..|+|.++.
T Consensus       304 ~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt  383 (498)
T KOG4328|consen  304 NVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT  383 (498)
T ss_pred             EEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc
Confidence            9999877653 3222 47789999999995 5688999999999999987533222   334578888999999998888


Q ss_pred             EEEEEeCCCeEEEEECC----CCceeEeecCCC------CeEEEEEecCCcEEEEEc-CCcEEEEECCCcceeeeeecCC
Q 018784          160 ILSSCTDSGGVRLWDAR----SGKIVQTLETKS------PVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPC  228 (350)
Q Consensus       160 ~~~s~~~dg~i~iwd~~----~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~~~~~~~  228 (350)
                      ++.+ ..|..|+|||..    .-.+..++.+..      ......|.|+..+++.+. -..|.|+|...++.+..+..+.
T Consensus       384 l~TT-~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~  462 (498)
T KOG4328|consen  384 LLTT-CQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE  462 (498)
T ss_pred             eEee-ccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc
Confidence            5555 567899999983    334555665532      234467999988888775 4579999998888776665554


Q ss_pred             CC---ceeEecCCCCcEEEEecCCCeEEEEEc
Q 018784          229 NT---ESASLEPKLGNIFIAGGEDMWVHVFDF  257 (350)
Q Consensus       229 ~~---~~~~~~~~~~~~l~sg~~d~~i~v~d~  257 (350)
                      ..   ....++|....+++-|+.-|.|+||--
T Consensus       463 ~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~  494 (498)
T KOG4328|consen  463 SSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN  494 (498)
T ss_pred             ccccccceeecccccceeccCCccceEEEEec
Confidence            32   233455543334555556778888853

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.81  E-value=2.8e-18  Score=146.75  Aligned_cols=203  Identities=18%  Similarity=0.295  Sum_probs=151.3

Q ss_pred             eccCccCCeEEEEECC-CCcEEEEeeCCCeEEEeeCCCCCe-------ee-eeeccccEeEEEEcCCC-CeEEEeeCCCe
Q 018784           56 TFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALTGDE-------KH-SFEHKHIVRACAFSEDT-HLLLTGGFEKI  125 (350)
Q Consensus        56 ~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~~~~-------~~-~~~h~~~V~~~~~~~~~-~~l~sg~~d~~  125 (350)
                      .+.||+++|.-++|+| +...+||||.|.+|+||++..+-.       +. ...|...|--++|||.. +.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            4589999999999987 567899999999999999764422       22 23599999999999965 57789999999


Q ss_pred             EEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCC--CeEEEEEecCCcEEE
Q 018784          126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS--PVTSAEVSRDGRYIT  203 (350)
Q Consensus       126 v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~  203 (350)
                      |.+||+.++...... . |...|+++.|+. ++.++++...|.+|||||.++++.+.....+.  .-..+.|-.++++++
T Consensus       156 v~iWnv~tgeali~l-~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t  232 (472)
T KOG0303|consen  156 VSIWNVGTGEALITL-D-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT  232 (472)
T ss_pred             EEEEeccCCceeeec-C-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence            999999987765443 2 899999999986 45566677789999999999999988875443  334456778888887


Q ss_pred             EE----cCCcEEEEECCCcceeeee-ecC-CCCceeEec-CCCCcEEEEecCCCeEEEEEcccCe
Q 018784          204 TA----DGSSVKFWDANHFGLVKGY-NMP-CNTESASLE-PKLGNIFIAGGEDMWVHVFDFHTGE  261 (350)
Q Consensus       204 ~~----~~~~i~vwd~~~~~~~~~~-~~~-~~~~~~~~~-~~~~~~l~sg~~d~~i~v~d~~~~~  261 (350)
                      ++    +++.+-+||.......-.+ .+. .+.....|. +...-++++|-.|+.||.|.+.+..
T Consensus       233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            76    4678999998765433221 111 122233333 3334467788889999999986544

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=9.8e-17  Score=149.83  Aligned_cols=288  Identities=18%  Similarity=0.225  Sum_probs=202.6

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC----CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEe
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET----GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~----~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vW   88 (350)
                      .-|+.++.+++++|   .++++|+|-.||.|.+|..-.    ..-.+.|.-|.+.|.+++|+++|.+|.|||..|-+.+|
T Consensus       202 ~~Htf~~t~~~~sp---n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~W  278 (792)
T KOG1963|consen  202 VHHTFNITCVALSP---NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLW  278 (792)
T ss_pred             hhhcccceeEEecc---ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEE
Confidence            36888899999987   899999999999999998432    22345677899999999999999999999999999999


Q ss_pred             eCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee----------ecCCCCcEEEEEEeCCCC
Q 018784           89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE----------VGNSSGSIRTVAWLHSDQ  158 (350)
Q Consensus        89 d~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~  158 (350)
                      ..++++....-.-...|..+.++||+.+.+....|..|.+-.+.+-......          .....+-.+.+.+.| ..
T Consensus       279 q~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~  357 (792)
T KOG1963|consen  279 QLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RT  357 (792)
T ss_pred             eecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CC
Confidence            9999884333345678999999999999999999999998876432211100          001122334455544 33


Q ss_pred             cEEEEEeCCCeEEEEECCCCceeEeecC------------CCCeEEEEEecCCcEEEEEc---------CC--cEEEEEC
Q 018784          159 TILSSCTDSGGVRLWDARSGKIVQTLET------------KSPVTSAEVSRDGRYITTAD---------GS--SVKFWDA  215 (350)
Q Consensus       159 ~~~~s~~~dg~i~iwd~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~---------~~--~i~vwd~  215 (350)
                      ..++-++..+.|.+||+.+-+.+..++.            +-+++.+..+-.|.++++..         ++  .+++|--
T Consensus       358 ~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~  437 (792)
T KOG1963|consen  358 NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQY  437 (792)
T ss_pred             CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEE
Confidence            4455567889999999987765554431            12456666677799988752         22  5788964


Q ss_pred             CC----cceeeeeecCCCC---ceeEecCCCCcEEEEecCCCeEEEEEcccC----------eeEEeecCCCcCEEEEEE
Q 018784          216 NH----FGLVKGYNMPCNT---ESASLEPKLGNIFIAGGEDMWVHVFDFHTG----------EQIGCNKGHHGPVHCVRF  278 (350)
Q Consensus       216 ~~----~~~~~~~~~~~~~---~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~----------~~~~~~~~h~~~v~~l~~  278 (350)
                      ..    +.+......|...   ..+..++.....+++++.|+.+++|-+..-          .+...-..|..++.+++|
T Consensus       438 n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~f  517 (792)
T KOG1963|consen  438 NPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCF  517 (792)
T ss_pred             cCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhh
Confidence            32    3333334444322   223333333348999999999999988322          122233357889999999


Q ss_pred             cCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784          279 SPGGESYASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       279 sp~~~~lasgs~Dg~v~vw~~~~~~~~  305 (350)
                      +.||. +++.|.|++|-+||.......
T Consensus       518 s~dGs-lla~s~~~~Itiwd~~~~~~l  543 (792)
T KOG1963|consen  518 SQDGS-LLAVSFDDTITIWDYDTKNEL  543 (792)
T ss_pred             cCCCc-EEEEecCCEEEEecCCChhhh
Confidence            99996 455678889999999874333

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=1e-18  Score=167.08  Aligned_cols=244  Identities=15%  Similarity=0.234  Sum_probs=184.0

Q ss_pred             ceeEEEecccCCCc-cEEEEEeCCCCeeEeeCCC------CceeeeccCccCCeEEEEECCCC-cEEEEeeCCCeEEEee
Q 018784           18 PVVDLFYSPITPDG-FFLVSASKDSSPMLRNGET------GDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWD   89 (350)
Q Consensus        18 ~v~~~~~~~~s~dg-~~lasgs~d~~v~iw~~~~------~~~~~~l~gH~~~V~~v~~~~~~-~~l~s~s~Dg~v~vWd   89 (350)
                      .-+.++|.++-.+. .++|.|..||.|.+||...      -+.+.++..|++.|+.+.|++.. .+||+|+.||.|.|||
T Consensus        66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD  145 (1049)
T KOG0307|consen   66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD  145 (1049)
T ss_pred             cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence            44567776643221 3689999999999999754      24466788999999999999865 4999999999999999


Q ss_pred             CCCCCeeeee---eccccEeEEEEcCC-CCeEEEeeCCCeEEEEECCCCCCCCeeec-CCCCcEEEEEEeCCCCcEEEEE
Q 018784           90 ALTGDEKHSF---EHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPPREVG-NSSGSIRTVAWLHSDQTILSSC  164 (350)
Q Consensus        90 ~~~~~~~~~~---~h~~~V~~~~~~~~-~~~l~sg~~d~~v~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~  164 (350)
                      +...+.....   .-.+.|.+++|+.. .+.|++++.++.+.|||++..+......- .....+..++|.|+.-..++.+
T Consensus       146 lnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~A  225 (1049)
T KOG0307|consen  146 LNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVA  225 (1049)
T ss_pred             cCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeee
Confidence            9875544443   34567999999874 56788999999999999987644333221 1224577889988877766666


Q ss_pred             eCCC---eEEEEECCCC-ceeEeec-CCCCeEEEEEecCC-cEE-EEEcCCcEEEEECCCcceeeeeecCCC-CceeEec
Q 018784          165 TDSG---GVRLWDARSG-KIVQTLE-TKSPVTSAEVSRDG-RYI-TTADGSSVKFWDANHFGLVKGYNMPCN-TESASLE  236 (350)
Q Consensus       165 ~~dg---~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~-~~l-~~~~~~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~  236 (350)
                      ++|.   .|.+||+|.- .+++.+. +...|.++.|++.+ ++| .++.|+.|.+|+.++...+..+....+ ...+.|+
T Consensus       226 s~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~  305 (1049)
T KOG0307|consen  226 SGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWC  305 (1049)
T ss_pred             cCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeec
Confidence            6663   6999999865 4556664 45789999999866 554 456799999999999877766554332 3456788


Q ss_pred             CCCCcEEEEecCCCeEEEEEcccCe
Q 018784          237 PKLGNIFIAGGEDMWVHVFDFHTGE  261 (350)
Q Consensus       237 ~~~~~~l~sg~~d~~i~v~d~~~~~  261 (350)
                      +.+..++++.+-||+|-||.+..+.
T Consensus       306 pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  306 PRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCCcchhhhheeccceeeeeeecCC
Confidence            8888999999999999999987654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=5.4e-18  Score=148.57  Aligned_cols=293  Identities=17%  Similarity=0.209  Sum_probs=216.3

Q ss_pred             cccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeec-cCccCCeEEEEECC--CCcEEEEeeC
Q 018784            5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF-EGHKGAVWSCCLDA--NALFSASGSA   81 (350)
Q Consensus         5 ~~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l-~gH~~~V~~v~~~~--~~~~l~s~s~   81 (350)
                      ++.+...+.+|.+-|..|.|+.   .|..|+|||.|..+.+||=.++.....+ .||...|.-..|-|  +.+.+++.+.
T Consensus       131 r~~l~~kL~~H~GcVntV~FN~---~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~  207 (559)
T KOG1334|consen  131 RLRLQKKLNKHKGCVNTVHFNQ---RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSR  207 (559)
T ss_pred             HhhhhhcccCCCCccceeeecc---cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccc
Confidence            3445556689999999999996   8999999999999999998887776665 57998887666644  4578899999


Q ss_pred             CCeEEEeeCCC-CCee---eeeeccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCCCC--eeecCCCC---cEEEE
Q 018784           82 DFTAKLWDALT-GDEK---HSFEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPP--REVGNSSG---SIRTV  151 (350)
Q Consensus        82 Dg~v~vWd~~~-~~~~---~~~~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~--~~~~~~~~---~v~~~  151 (350)
                      ||.||+=.+.. +.+.   ....|.+.|.-++.-|+. .-|++++.|+.+.-+|+.......  ........   ...++
T Consensus       208 dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~I  287 (559)
T KOG1334|consen  208 DGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTI  287 (559)
T ss_pred             cCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeE
Confidence            99999987643 3322   233699999999998854 668899999999999986543221  11122222   35667


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEECCCCce------eEee-------cCCCCeEEEEEecC-CcEEEEEcCCcEEEEECCC
Q 018784          152 AWLHSDQTILSSCTDSGGVRLWDARSGKI------VQTL-------ETKSPVTSAEVSRD-GRYITTADGSSVKFWDANH  217 (350)
Q Consensus       152 ~~~~~~~~~~~s~~~dg~i~iwd~~~~~~------~~~~-------~~~~~v~~~~~~~~-~~~l~~~~~~~i~vwd~~~  217 (350)
                      +..|.....+++++.|..+++||.+.-..      +..+       .....|+.+.++.+ +.++++..|-.|.++...-
T Consensus       288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~  367 (559)
T KOG1334|consen  288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM  367 (559)
T ss_pred             ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence            76676777889999999999999875321      1221       12346889999954 5778888888899884321


Q ss_pred             --c----------ceeee-eecCCCC---ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCC
Q 018784          218 --F----------GLVKG-YNMPCNT---ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPG  281 (350)
Q Consensus       218 --~----------~~~~~-~~~~~~~---~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~  281 (350)
                        +          ..++. |..+.+.   ..+-|..+..+++++|+.-|.|.+|+-.+++.+..+.+-..-|+||.-+|-
T Consensus       368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~  447 (559)
T KOG1334|consen  368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPH  447 (559)
T ss_pred             ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCC
Confidence              1          11111 3333332   233455445689999999999999999999998888876668999999999


Q ss_pred             CCEEEEecCCCcEEEecCC
Q 018784          282 GESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       282 ~~~lasgs~Dg~v~vw~~~  300 (350)
                      -+.|||.+-|..|+||.-.
T Consensus       448 ~PvLAsSGid~DVKIWTP~  466 (559)
T KOG1334|consen  448 LPVLASSGIDHDVKIWTPL  466 (559)
T ss_pred             CchhhccCCccceeeecCC
Confidence            9999999999999999753

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=4.3e-17  Score=151.38  Aligned_cols=235  Identities=19%  Similarity=0.164  Sum_probs=163.2

Q ss_pred             CCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCC---CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCe
Q 018784           40 DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL  116 (350)
Q Consensus        40 d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D---g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~  116 (350)
                      +..+.|||..... ...+..|...+...+|+|+++.++..+.+   ..|.+||+.+++........+....++|+|+|+.
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~  261 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR  261 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence            4678999975544 45677888899999999999988877654   4799999988764333223333457899999998


Q ss_pred             EEEee-CCCeEEEE--ECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC-ceeEeecCCCCeEE
Q 018784          117 LLTGG-FEKILRIF--DLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETKSPVTS  192 (350)
Q Consensus       117 l~sg~-~d~~v~vw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~-~~~~~~~~~~~v~~  192 (350)
                      |+.++ .++.+.||  |+..+.  ......+...+....|++++..++++...++...||++... .....+... . ..
T Consensus       262 La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~-~-~~  337 (429)
T PRK01742        262 LAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGR-G-YS  337 (429)
T ss_pred             EEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCC-C-CC
Confidence            88764 67877666  554332  23333455567788999877777777667788888876432 222223222 2 45


Q ss_pred             EEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcc--cCeeEEeecCCC
Q 018784          193 AEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH--TGEQIGCNKGHH  270 (350)
Q Consensus       193 ~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~--~~~~~~~~~~h~  270 (350)
                      ..|+|+|++++......+.+||+.++..... ..........+.| ++++++.++.++.+.+|.+.  +|+.+..+.+|.
T Consensus       338 ~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~l-t~~~~~~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~  415 (429)
T PRK01742        338 AQISADGKTLVMINGDNVVKQDLTSGSTEVL-SSTFLDESPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD  415 (429)
T ss_pred             ccCCCCCCEEEEEcCCCEEEEECCCCCeEEe-cCCCCCCCceECC-CCCEEEEEEcCCCceEEEEEECCCCceEEccCCC
Confidence            6799999988766555677799987654321 1111223445655 68899999889988888763  577888888888


Q ss_pred             cCEEEEEEcCC
Q 018784          271 GPVHCVRFSPG  281 (350)
Q Consensus       271 ~~v~~l~~sp~  281 (350)
                      +.+...+|+|-
T Consensus       416 g~~~~p~wsp~  426 (429)
T PRK01742        416 GQVKFPAWSPY  426 (429)
T ss_pred             CCCCCcccCCC
Confidence            88999999984

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.78  E-value=7.8e-17  Score=132.95  Aligned_cols=245  Identities=16%  Similarity=0.239  Sum_probs=172.1

Q ss_pred             ceeEEEecccCCCccEEEEEeC----CCCeeEee--CCCCceeeec-cCccCCeEEEEECCCC-----cEEEEeeCCCeE
Q 018784           18 PVVDLFYSPITPDGFFLVSASK----DSSPMLRN--GETGDWIGTF-EGHKGAVWSCCLDANA-----LFSASGSADFTA   85 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~----d~~v~iw~--~~~~~~~~~l-~gH~~~V~~v~~~~~~-----~~l~s~s~Dg~v   85 (350)
                      +++++.|+.....+..||.||.    .++|.|-.  .++++.+..- -.|.-+++.+.|.|+.     .+|||.  +..+
T Consensus        46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~L  123 (364)
T KOG0290|consen   46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFL  123 (364)
T ss_pred             ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCeE
Confidence            5677888755333568899984    45566644  3455554211 2588899999998875     467765  5589


Q ss_pred             EEeeCCCCCe----eeee------eccccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCC--CCeeecCCCCcEEEEE
Q 018784           86 KLWDALTGDE----KHSF------EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDA--PPREVGNSSGSIRTVA  152 (350)
Q Consensus        86 ~vWd~~~~~~----~~~~------~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~--~~~~~~~~~~~v~~~~  152 (350)
                      |+|.+...+.    ...+      .+..++++.+|+. +-+++.+.+-|-+..|||++.+..  ...++-.|...|..++
T Consensus       124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa  203 (364)
T KOG0290|consen  124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA  203 (364)
T ss_pred             EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence            9998763221    1112      1445678888875 668899999999999999987532  3455667899999999


Q ss_pred             EeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC----CCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCC
Q 018784          153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET----KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPC  228 (350)
Q Consensus       153 ~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~  228 (350)
                      |...+..++++.+.||.+|++|+|.-+.-..+..    ..+...++|++                               
T Consensus       204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnk-------------------------------  252 (364)
T KOG0290|consen  204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNK-------------------------------  252 (364)
T ss_pred             eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCc-------------------------------
Confidence            9987788999999999999999987653222221    12333333333                               


Q ss_pred             CCceeEecCCCCcEEEEecCCC-eEEEEEcccC-eeEEeecCCCcCEEEEEEcCCC-CEEEEecCCCcEEEecCCCCCc
Q 018784          229 NTESASLEPKLGNIFIAGGEDM-WVHVFDFHTG-EQIGCNKGHHGPVHCVRFSPGG-ESYASGSEDGTIRIWQTNPPNH  304 (350)
Q Consensus       229 ~~~~~~~~~~~~~~l~sg~~d~-~i~v~d~~~~-~~~~~~~~h~~~v~~l~~sp~~-~~lasgs~Dg~v~vw~~~~~~~  304 (350)
                               ++.+++++-..|. +|.+.|++.. ..+..+++|.+.|+.++|.|.. ..++|++.|..+.+||+.....
T Consensus       253 ---------qDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~  322 (364)
T KOG0290|consen  253 ---------QDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR  322 (364)
T ss_pred             ---------CCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence                     2344444444433 4777777753 5678899999999999999974 6799999999999999976554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.77  E-value=2.6e-16  Score=151.40  Aligned_cols=260  Identities=16%  Similarity=0.231  Sum_probs=183.2

Q ss_pred             eeCCCCceeeeccCccCCeEEEEECC-CCcEEEEeeCCCeEEEeeCCCC-------Ceeeeee-ccccEeEEEEcCCCCe
Q 018784           46 RNGETGDWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALTG-------DEKHSFE-HKHIVRACAFSEDTHL  116 (350)
Q Consensus        46 w~~~~~~~~~~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~~-------~~~~~~~-h~~~V~~~~~~~~~~~  116 (350)
                      |+. .|..+..|..|+..|..++.++ ++.+|+|||.||+||+|+...-       +...++. -.+.+.++.+.+.++.
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            543 5778889999999998888765 5599999999999999997432       1222333 4567999999999999


Q ss_pred             EEEeeCCCeEEEEECCCCCCCCe-------eecCCCCcEEEEE-EeCCCCc-EEEEEeCCCeEEEEECCCCceeEeecC-
Q 018784          117 LLTGGFEKILRIFDLNRPDAPPR-------EVGNSSGSIRTVA-WLHSDQT-ILSSCTDSGGVRLWDARSGKIVQTLET-  186 (350)
Q Consensus       117 l~sg~~d~~v~vwd~~~~~~~~~-------~~~~~~~~v~~~~-~~~~~~~-~~~s~~~dg~i~iwd~~~~~~~~~~~~-  186 (350)
                      +|.++.||.|++.+++.......       .-....+.+..+. +....+. .++.+..-+.|..||+++......++. 
T Consensus      1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred             EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence            99999999999999875211111       1112344555553 3333344 677777888999999998877777664 


Q ss_pred             --CCCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceeeeeecCCCC--ceeEecCCCC--cEEEEecC--CCeEEEEEc
Q 018784          187 --KSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNT--ESASLEPKLG--NIFIAGGE--DMWVHVFDF  257 (350)
Q Consensus       187 --~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~l~sg~~--d~~i~v~d~  257 (350)
                        ++.|++++++|.+.+++.|. .|.+-+||+|=..++.....+...  .-..+++..+  ...++++.  .+.|-+|++
T Consensus      1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred             ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence              57899999999999988775 678999999977777776665432  2233333333  55555554  678999999


Q ss_pred             ccCeeEEeecCC-C-------c-----------CEEEEEEcCCCCEEEEecCCCcEEEecCCCCCccc
Q 018784          258 HTGEQIGCNKGH-H-------G-----------PVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEE  306 (350)
Q Consensus       258 ~~~~~~~~~~~h-~-------~-----------~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~  306 (350)
                      .+|....++..- .       .           .....++...+.++.+|+.|..|+.||...+....
T Consensus      1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss 1340 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISS 1340 (1431)
T ss_pred             ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccccc
Confidence            988665544321 1       1           11223333345789999999999999998777663

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.77  E-value=1.8e-16  Score=147.37  Aligned_cols=260  Identities=15%  Similarity=0.166  Sum_probs=188.2

Q ss_pred             CCCeeEeeCCCC-ceeeeccCccCCeEEEEECC-CCcEEEEeeCCCeEEEeeCCCCCe--ee-----eeeccccEeEEEE
Q 018784           40 DSSPMLRNGETG-DWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALTGDE--KH-----SFEHKHIVRACAF  110 (350)
Q Consensus        40 d~~v~iw~~~~~-~~~~~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~~~~--~~-----~~~h~~~V~~~~~  110 (350)
                      ++.+.||+++.. .+...+.. ...|.++.|+| +..++|.|..+|.|-+||+..+..  ..     ...|..+|..+.|
T Consensus       221 ~~~~~vW~~~~p~~Pe~~~~~-~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW  299 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPELVLES-PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW  299 (555)
T ss_pred             CceEEEEecCCCCCceEEEec-CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence            346889998765 44445543 46789999987 567899999999999999876654  22     2248888999999


Q ss_pred             cCCC--CeEEEeeCCCeEEEEECCCCCCCCee-----ec------CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEE---E
Q 018784          111 SEDT--HLLLTGGFEKILRIFDLNRPDAPPRE-----VG------NSSGSIRTVAWLHSDQTILSSCTDSGGVRLW---D  174 (350)
Q Consensus       111 ~~~~--~~l~sg~~d~~v~vwd~~~~~~~~~~-----~~------~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iw---d  174 (350)
                      ..+.  .-+++++.||.|..|+++.-..+...     ..      .....+++++|.+.+...++.|+++|.|.--   +
T Consensus       300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g  379 (555)
T KOG1587|consen  300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG  379 (555)
T ss_pred             eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence            6654  44999999999999987643332211     11      2234578889988888889999999998873   3


Q ss_pred             CCCCc-----ee-EeecCCCCeEEEEEecCC-cEEEEEcCCcEEEEECC-CcceeeeeecCCC-CceeEecCCCCcEEEE
Q 018784          175 ARSGK-----IV-QTLETKSPVTSAEVSRDG-RYITTADGSSVKFWDAN-HFGLVKGYNMPCN-TESASLEPKLGNIFIA  245 (350)
Q Consensus       175 ~~~~~-----~~-~~~~~~~~v~~~~~~~~~-~~l~~~~~~~i~vwd~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s  245 (350)
                      .+.+.     .. ....+..++..+.++|=+ +++.++.|-++++|... ...++..+..... .....++|....+|++
T Consensus       380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~  459 (555)
T KOG1587|consen  380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT  459 (555)
T ss_pred             CcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence            33322     11 222345789999999855 44555558899999876 4444444444333 4556778877789999


Q ss_pred             ecCCCeEEEEEcccC--eeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          246 GGEDMWVHVFDFHTG--EQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       246 g~~d~~i~v~d~~~~--~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      +..||.|.+||+...  +++.....+....+.+.|++++++|+.|...|.+.+|++.
T Consensus       460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            999999999999654  3444454456667888999999999999999999999985

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.75  E-value=2.9e-16  Score=145.95  Aligned_cols=241  Identities=16%  Similarity=0.107  Sum_probs=172.4

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCce--ee----eccCccCCeEEEEECCCC--cEEEEeeCCCeEEE
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IG----TFEGHKGAVWSCCLDANA--LFSASGSADFTAKL   87 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~--~~----~l~gH~~~V~~v~~~~~~--~~l~s~s~Dg~v~v   87 (350)
                      ..+|.++.|+|+.|.  +||.|+.+|+|.+||...+..  ..    ....|..+|+.+.|-.+.  .-++|+|.||.|..
T Consensus       242 ~s~v~~~~f~p~~p~--ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~  319 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPN--LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICS  319 (555)
T ss_pred             CCceeEEEeccCCcc--eEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEee
Confidence            558999999998776  999999999999999876544  22    224589999999996544  44899999999999


Q ss_pred             eeCCCCCe------eeeeec-------cccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCC-------CCeeecCCCC
Q 018784           88 WDALTGDE------KHSFEH-------KHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDA-------PPREVGNSSG  146 (350)
Q Consensus        88 Wd~~~~~~------~~~~~h-------~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~-------~~~~~~~~~~  146 (350)
                      |++..-..      .....|       ...+.+++|.+ +-..++.|..+|.|..-.....+.       .......|.+
T Consensus       320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g  399 (555)
T KOG1587|consen  320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG  399 (555)
T ss_pred             eeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence            98643221      111112       23578899988 456788999999987743322111       1223456788


Q ss_pred             cEEEEEEeCCCCcEEEEEeCCCeEEEEECC-CCceeEeecCC-CCeEEEEEecCCc--EEEEEcCCcEEEEECCCc--ce
Q 018784          147 SIRTVAWLHSDQTILSSCTDSGGVRLWDAR-SGKIVQTLETK-SPVTSAEVSRDGR--YITTADGSSVKFWDANHF--GL  220 (350)
Q Consensus       147 ~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~-~~~~~~~~~~~-~~v~~~~~~~~~~--~l~~~~~~~i~vwd~~~~--~~  220 (350)
                      .|+++.++|-...++++++ |.+++||... ...++..+... ..+++++|+|---  ++++..+|.+.+||+...  .+
T Consensus       400 ~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P  478 (555)
T KOG1587|consen  400 PVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP  478 (555)
T ss_pred             ceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence            9999999988888888887 7899999987 55666665544 4499999999652  334445899999998653  34


Q ss_pred             eeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEccc
Q 018784          221 VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (350)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~  259 (350)
                      +.++..........+.+..++++++|...|.+++|++..
T Consensus       479 v~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  479 VLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            444433323333444455689999999999999999853

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.75  E-value=1.5e-16  Score=131.16  Aligned_cols=220  Identities=19%  Similarity=0.302  Sum_probs=148.8

Q ss_pred             CCCCeeEeeCCC--Cce-eeeccCccCCeEEEEECCCC-cEEEEeeCC-------CeEEEeeCCCCCee---------ee
Q 018784           39 KDSSPMLRNGET--GDW-IGTFEGHKGAVWSCCLDANA-LFSASGSAD-------FTAKLWDALTGDEK---------HS   98 (350)
Q Consensus        39 ~d~~v~iw~~~~--~~~-~~~l~gH~~~V~~v~~~~~~-~~l~s~s~D-------g~v~vWd~~~~~~~---------~~   98 (350)
                      .|+.|.+.+.+.  ++. .+.|..|.+.|+.++-+|.. ..|+|.=.|       ..+-||.+......         ..
T Consensus        38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~  117 (370)
T KOG1007|consen   38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS  117 (370)
T ss_pred             CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence            477888766543  333 34678889999999998854 556665332       35789987543221         12


Q ss_pred             e--eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee-----cCCCCcEEEEEEeC-CCCcEEEEEeCCCeE
Q 018784           99 F--EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV-----GNSSGSIRTVAWLH-SDQTILSSCTDSGGV  170 (350)
Q Consensus        99 ~--~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~~~~s~~~dg~i  170 (350)
                      +  .+-+.+.|+.|.|++..+++-. |..|.+|++..........     ..+.....+-+|+| .++..+++. .|+++
T Consensus       118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl  195 (370)
T KOG1007|consen  118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTL  195 (370)
T ss_pred             CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcE
Confidence            2  2445799999999999888766 8899999997654421111     12233455666776 345555543 45788


Q ss_pred             EEEECCCCceeEeecC--CCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecC
Q 018784          171 RLWDARSGKIVQTLET--KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE  248 (350)
Q Consensus       171 ~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~  248 (350)
                      ..||+|+.+....+..  ...+..+.|+|+                                        ...+|++|+.
T Consensus       196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpn----------------------------------------kq~~lvt~gD  235 (370)
T KOG1007|consen  196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPN----------------------------------------KQHILVTCGD  235 (370)
T ss_pred             EEEEccchhhhcchhhhhcceeeeccCCCC----------------------------------------ceEEEEEcCC
Confidence            8888877655444431  223444444443                                        3467778888


Q ss_pred             CCeEEEEEcccC-eeEEeecCCCcCEEEEEEcCC-CCEEEEecCCCcEEEecCC
Q 018784          249 DMWVHVFDFHTG-EQIGCNKGHHGPVHCVRFSPG-GESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       249 d~~i~v~d~~~~-~~~~~~~~h~~~v~~l~~sp~-~~~lasgs~Dg~v~vw~~~  300 (350)
                      |+.|++||++.- .++..+.+|.-+|++++|+|. .+++.|||.|..|.+|...
T Consensus       236 dgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~  289 (370)
T KOG1007|consen  236 DGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS  289 (370)
T ss_pred             CccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence            888888887653 567788899999999999985 6788999999999999764

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.74  E-value=2.9e-16  Score=131.40  Aligned_cols=202  Identities=16%  Similarity=0.287  Sum_probs=156.8

Q ss_pred             ccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCC------CC------CeeecCCCCcEEEEEEeC------CCCcEEEEE
Q 018784          103 HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD------AP------PREVGNSSGSIRTVAWLH------SDQTILSSC  164 (350)
Q Consensus       103 ~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~------~~------~~~~~~~~~~v~~~~~~~------~~~~~~~s~  164 (350)
                      +....+.|+|||..|++-+.|..+++|++....      .+      ....-.....|...+|.+      ++..++++.
T Consensus        50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s  129 (406)
T KOG2919|consen   50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS  129 (406)
T ss_pred             hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence            456788999999999999999999999985211      00      011112345677777762      456778888


Q ss_pred             eCCCeEEEEECCCCceeEeecCC------CCeEEEEEecCCcEEEEEcCCcEEEEEC-CCcceeeeee--------cCCC
Q 018784          165 TDSGGVRLWDARSGKIVQTLETK------SPVTSAEVSRDGRYITTADGSSVKFWDA-NHFGLVKGYN--------MPCN  229 (350)
Q Consensus       165 ~~dg~i~iwd~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~~~i~vwd~-~~~~~~~~~~--------~~~~  229 (350)
                      +.|.-|++||.-+|+........      ....+++|+|||.+|.++..+.|++||+ |.++....+.        ...-
T Consensus       130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi  209 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI  209 (406)
T ss_pred             cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence            99999999999999887666542      3567899999999999999999999999 4443222111        1122


Q ss_pred             CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecC-CCcEEEecCCCCCc
Q 018784          230 TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSE-DGTIRIWQTNPPNH  304 (350)
Q Consensus       230 ~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~-Dg~v~vw~~~~~~~  304 (350)
                      ..+.+++|.+...+++|+....+-||.-..++++..+.+|.+.|+.++|.++|+.|.+|+. |-.|..||++....
T Consensus       210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~  285 (406)
T KOG2919|consen  210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD  285 (406)
T ss_pred             eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc
Confidence            3455677877789999999999999999999999999999999999999999999999985 77899999875443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=4.2e-17  Score=144.95  Aligned_cols=163  Identities=20%  Similarity=0.347  Sum_probs=121.1

Q ss_pred             eeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee--eccccEeEEEEcC--CCCeEEEeeCCCeEEEE
Q 018784           54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF--EHKHIVRACAFSE--DTHLLLTGGFEKILRIF  129 (350)
Q Consensus        54 ~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~--~h~~~V~~~~~~~--~~~~l~sg~~d~~v~vw  129 (350)
                      ...|.||++.|+++.|+.+|.+|+|||.|-.+.|||....+.++.+  .|...|.++.|-|  +..++++|+.|..|++|
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            3578999999999999999999999999999999999888877776  5999999999988  56789999999999999


Q ss_pred             ECCCC---------CCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCce-eEeecC----------CCC
Q 018784          130 DLNRP---------DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI-VQTLET----------KSP  189 (350)
Q Consensus       130 d~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~-~~~~~~----------~~~  189 (350)
                      |+.+.         .........|...|..++-.+.....+.++++||+|+=+|+|.... -.....          --.
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie  202 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE  202 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence            99752         1222334556677777777777778999999999999999986321 111100          123


Q ss_pred             eEEEEEecCC-cEE-EEEcCCcEEEEECC
Q 018784          190 VTSAEVSRDG-RYI-TTADGSSVKFWDAN  216 (350)
Q Consensus       190 v~~~~~~~~~-~~l-~~~~~~~i~vwd~~  216 (350)
                      ..++.++|.. .+| +++++--.++||.|
T Consensus       203 lk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  203 LKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             eeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            4455566543 233 33445566777653

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.73  E-value=7.4e-18  Score=156.17  Aligned_cols=244  Identities=20%  Similarity=0.300  Sum_probs=179.8

Q ss_pred             eeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEEC
Q 018784           53 WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDL  131 (350)
Q Consensus        53 ~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~  131 (350)
                      .++.|.||.++|+|+.|+-.|.+++||+.|..||||..++..+.... .|.+.++.++.+.+..++++++.|..|++|.+
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl  261 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL  261 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence            34567899999999999999999999999999999999888887776 58899999999999999999999999999999


Q ss_pred             CCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEe------ecCCCCeEEEEEecCCcE-EEE
Q 018784          132 NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQT------LETKSPVTSAEVSRDGRY-ITT  204 (350)
Q Consensus       132 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~------~~~~~~v~~~~~~~~~~~-l~~  204 (350)
                      ..+. +...+..|.+.|++++|+|-.     +.++||++++||.+ -.+...      +....-+.++.+..++.- ++.
T Consensus       262 ~~~~-pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg  334 (1113)
T KOG0644|consen  262 PDGA-PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG  334 (1113)
T ss_pred             CCCc-hHHHHhccccceeeeccCccc-----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccc
Confidence            7644 445567899999999998743     66789999999987 111111      112233455555555543 334


Q ss_pred             EcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCE
Q 018784          205 ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGES  284 (350)
Q Consensus       205 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~  284 (350)
                      +.++.-+.|.........     ..............+.++.-.+..+.+|++.+|.+++.+.+|...++.|.++|-+..
T Consensus       335 s~d~ea~n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~r  409 (1113)
T KOG0644|consen  335 SRDGEARNHEFEQLAWRS-----NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPR  409 (1113)
T ss_pred             cCCcccccchhhHhhhhc-----cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcH
Confidence            445555555432211000     000111111122356677777888999999999999999999999999999997655


Q ss_pred             -EEEecCCCcEEEecCCCCCcccCC
Q 018784          285 -YASGSEDGTIRIWQTNPPNHEENH  308 (350)
Q Consensus       285 -lasgs~Dg~v~vw~~~~~~~~~~~  308 (350)
                       ..+++.||...|||+-.+.....+
T Consensus       410 i~msag~dgst~iwdi~eg~pik~y  434 (1113)
T KOG0644|consen  410 IAMSAGYDGSTIIWDIWEGIPIKHY  434 (1113)
T ss_pred             hhhhccCCCceEeeecccCCcceee
Confidence             459999999999998655554433

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=8.7e-15  Score=137.00  Aligned_cols=294  Identities=20%  Similarity=0.266  Sum_probs=206.3

Q ss_pred             ccccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCC---cEEEEee
Q 018784            4 RKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA---LFSASGS   80 (350)
Q Consensus         4 ~~~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~---~~l~s~s   80 (350)
                      .+..+|..+.|-...-..-.|+   +|+++++. ..+.+|.||...++++++.|++|..++..+.+.+..   .++.+.+
T Consensus         4 e~~~~~~~lgg~n~~~~~avfS---nD~k~l~~-~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~s   79 (792)
T KOG1963|consen    4 ESGGKPALLGGRNGNKSPAVFS---NDAKFLFL-CTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCS   79 (792)
T ss_pred             ccccceeeeccccceecccccc---cCCcEEEE-eeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEe
Confidence            4455555565544433333355   59998875 455889999999999999999999999999987654   4677999


Q ss_pred             CCCeEEEeeCCCCCeee---------------------------------------------------------------
Q 018784           81 ADFTAKLWDALTGDEKH---------------------------------------------------------------   97 (350)
Q Consensus        81 ~Dg~v~vWd~~~~~~~~---------------------------------------------------------------   97 (350)
                      .||+|++||-..+..+.                                                               
T Consensus        80 l~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~  159 (792)
T KOG1963|consen   80 LDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKE  159 (792)
T ss_pred             cCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhh
Confidence            99999999854322100                                                               


Q ss_pred             -------------------------ee----------------eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCC---
Q 018784           98 -------------------------SF----------------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR---  133 (350)
Q Consensus        98 -------------------------~~----------------~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~---  133 (350)
                                               .+                .|...+++.++||++.++++|..||.|.+|.-..   
T Consensus       160 ~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~  239 (792)
T KOG1963|consen  160 HQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD  239 (792)
T ss_pred             hcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc
Confidence                                     00                0333467899999999999999999999995322   


Q ss_pred             CCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEE-EEcCCcEEE
Q 018784          134 PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT-TADGSSVKF  212 (350)
Q Consensus       134 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~i~v  212 (350)
                      .........-|...|.+++|++ ++..++||+..+.+-+|.+.+++...--...++|..+.++||+.+.+ ...|..|.+
T Consensus       240 ~~~t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~l  318 (792)
T KOG1963|consen  240 DSETCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHL  318 (792)
T ss_pred             ccccceEEEecccccceeEEec-CCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEE
Confidence            2333455566888999999986 45677799999999999999998433334578999999999997654 456778777


Q ss_pred             EECCCcce---eeeeecC---------CCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec-----------CC
Q 018784          213 WDANHFGL---VKGYNMP---------CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK-----------GH  269 (350)
Q Consensus       213 wd~~~~~~---~~~~~~~---------~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~-----------~h  269 (350)
                      ..+.+...   +.++..+         .......+.| ..+.++-.+.-+.|.+||+.+-+.+..+.           .+
T Consensus       319 i~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~  397 (792)
T KOG1963|consen  319 IKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNI  397 (792)
T ss_pred             EeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCccee
Confidence            76544332   2222221         1123344555 34677888889999999997765543321           23


Q ss_pred             CcCEEEEEEcCCCCEEEEec--------CCC--cEEEecCCCCC
Q 018784          270 HGPVHCVRFSPGGESYASGS--------EDG--TIRIWQTNPPN  303 (350)
Q Consensus       270 ~~~v~~l~~sp~~~~lasgs--------~Dg--~v~vw~~~~~~  303 (350)
                      ...+++++.+-.|.+++|.-        .||  .+++|...+..
T Consensus       398 ~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~  441 (792)
T KOG1963|consen  398 QVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS  441 (792)
T ss_pred             EEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence            34578888888899999864        233  57889875443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=3e-16  Score=135.63  Aligned_cols=201  Identities=20%  Similarity=0.255  Sum_probs=131.7

Q ss_pred             EEEEECCCCcEEEEeeCCCeEEEeeCCCCC-eeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee-c
Q 018784           65 WSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV-G  142 (350)
Q Consensus        65 ~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~-~  142 (350)
                      .+++++.+|..+++|+.||++|||+..... ......|...|.+++|+||+++|++-+.| ..+||++.++....... .
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            578999999999999999999999955443 44445788999999999999999999999 99999998763332222 1


Q ss_pred             CCCCcEEEEEEeCCC---C-cEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCc
Q 018784          143 NSSGSIRTVAWLHSD---Q-TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHF  218 (350)
Q Consensus       143 ~~~~~v~~~~~~~~~---~-~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~  218 (350)
                      ........|.|..++   . ++++....-+.|+.||+                                   .+|+-...
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~-----------------------------------~~w~~~~~  271 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDI-----------------------------------SLWSGSNF  271 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEe-----------------------------------eeeccccc
Confidence            111223334443221   1 11222222233333332                                   22222100


Q ss_pred             ceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEee-cCCCcCEEEEEEcCCCCEEEEecCCCcEEEe
Q 018784          219 GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCN-KGHHGPVHCVRFSPGGESYASGSEDGTIRIW  297 (350)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~-~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw  297 (350)
                      -..+.........+......+|++++.|+.||.|-+++..+.+.+... +.|...|+.+.|+|+.+++++-|.|..+.|-
T Consensus       272 l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~  351 (398)
T KOG0771|consen  272 LRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT  351 (398)
T ss_pred             cchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence            000000000112222222345788899999999999999887776544 5899999999999999999999999999988


Q ss_pred             cCCC
Q 018784          298 QTNP  301 (350)
Q Consensus       298 ~~~~  301 (350)
                      .+..
T Consensus       352 ~l~v  355 (398)
T KOG0771|consen  352 KLAV  355 (398)
T ss_pred             EEee
Confidence            7644

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.72  E-value=2.5e-15  Score=144.82  Aligned_cols=283  Identities=18%  Similarity=0.164  Sum_probs=189.8

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC-----C--ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeE
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-----G--DWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~-----~--~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v   85 (350)
                      +.|+..|..++.++  +++.+++|||.||+|++|+...     +  +...++.--.+.+.++.+.+.+..+|.++.||.|
T Consensus      1045 ~Ehs~~v~k~a~s~--~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSS--EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred             hhccccccceeecC--CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence            57888999888776  5668999999999999999642     1  1222333234678888888999999999999999


Q ss_pred             EEeeCCCCCeee-------eee--ccc-cEeEEEEcCC-CC-eEEEeeCCCeEEEEECCCCCCCC-eeecCCCCcEEEEE
Q 018784           86 KLWDALTGDEKH-------SFE--HKH-IVRACAFSED-TH-LLLTGGFEKILRIFDLNRPDAPP-REVGNSSGSIRTVA  152 (350)
Q Consensus        86 ~vWd~~~~~~~~-------~~~--h~~-~V~~~~~~~~-~~-~l~sg~~d~~v~vwd~~~~~~~~-~~~~~~~~~v~~~~  152 (350)
                      ++.++.......       ..+  ..+ .|..-+|... .. .|+.+..-+.|..||+.+..... .......|.|++++
T Consensus      1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~ 1202 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV 1202 (1431)
T ss_pred             EEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEE
Confidence            999886522111       111  122 2444455432 23 56677778889999987543221 12234567899998


Q ss_pred             EeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC--CCCeEEEEEecC---CcEEEEE---cCCcEEEEECCCcceeeee
Q 018784          153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET--KSPVTSAEVSRD---GRYITTA---DGSSVKFWDANHFGLVKGY  224 (350)
Q Consensus       153 ~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~---~~~l~~~---~~~~i~vwd~~~~~~~~~~  224 (350)
                      ..+. +..++.|+..|.+.+||+|=+.++..+.+  ..+++.+..+|-   ....+++   ..+.|.+|++.++.+-..+
T Consensus      1203 idp~-~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1203 IDPW-CNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred             ecCC-ceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence            7654 45888899999999999998888887775  467777777653   3344332   3467999999876543333


Q ss_pred             ecC-----------CC----Cc----eeEecCCCCcEEEEecCCCeEEEEEcccCeeE----------------------
Q 018784          225 NMP-----------CN----TE----SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI----------------------  263 (350)
Q Consensus       225 ~~~-----------~~----~~----~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~----------------------  263 (350)
                      -..           .+    +.    ..+.....+..+++|+.|..|+.||....+..                      
T Consensus      1282 ~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~ 1361 (1431)
T KOG1240|consen 1282 WASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLST 1361 (1431)
T ss_pred             EcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccc
Confidence            211           11    00    01111223567899999999999997432210                      


Q ss_pred             -------------------E---------------eecCCCcCEEEEEEcCC-CCEEEEecCCCcEEEec
Q 018784          264 -------------------G---------------CNKGHHGPVHCVRFSPG-GESYASGSEDGTIRIWQ  298 (350)
Q Consensus       264 -------------------~---------------~~~~h~~~v~~l~~sp~-~~~lasgs~Dg~v~vw~  298 (350)
                                         .               .-.+|..+|++|++... ..+|++++.||.|+||.
T Consensus      1362 i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1362 IPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             cCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence                               0               01357788888888754 35789999999999994

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.72  E-value=1.2e-14  Score=130.83  Aligned_cols=226  Identities=13%  Similarity=0.141  Sum_probs=147.5

Q ss_pred             EEEeeCCCeEEEeeCCC-CC--eeeeeeccccEeEEEEcCCCCeEEEee-CCCeEEEEECCC-CCCCCeeecCCCCcEEE
Q 018784           76 SASGSADFTAKLWDALT-GD--EKHSFEHKHIVRACAFSEDTHLLLTGG-FEKILRIFDLNR-PDAPPREVGNSSGSIRT  150 (350)
Q Consensus        76 l~s~s~Dg~v~vWd~~~-~~--~~~~~~h~~~V~~~~~~~~~~~l~sg~-~d~~v~vwd~~~-~~~~~~~~~~~~~~v~~  150 (350)
                      .++...|+.|.+|++.+ ++  .+..+.+.+.+..++++|++++|++++ .++.|.+|++.. +...........+....
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~   84 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH   84 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence            45557899999999964 33  334445556678899999999987764 578899999863 22111111122335667


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEECCC-C---ceeEeecCCCCeEEEEEecCCcEEEEE--cCCcEEEEECCCcceeee-
Q 018784          151 VAWLHSDQTILSSCTDSGGVRLWDARS-G---KIVQTLETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANHFGLVKG-  223 (350)
Q Consensus       151 ~~~~~~~~~~~~s~~~dg~i~iwd~~~-~---~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~vwd~~~~~~~~~-  223 (350)
                      +++.++++.++++...++.|.+||+.+ +   +.+..+........+.++|+++++.++  .++.|.+||+.+...+.. 
T Consensus        85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~  164 (330)
T PRK11028         85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ  164 (330)
T ss_pred             EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence            888877777777776789999999964 3   223333333456778899999887544  357899999976433211 


Q ss_pred             ----ee--cCCCCceeEecCCCCcEEEEec-CCCeEEEEEccc--Ce--eEEeecC------CCcCEEEEEEcCCCCEEE
Q 018784          224 ----YN--MPCNTESASLEPKLGNIFIAGG-EDMWVHVFDFHT--GE--QIGCNKG------HHGPVHCVRFSPGGESYA  286 (350)
Q Consensus       224 ----~~--~~~~~~~~~~~~~~~~~l~sg~-~d~~i~v~d~~~--~~--~~~~~~~------h~~~v~~l~~sp~~~~la  286 (350)
                          ..  ....+..+.+.+ +++++.+.. .++.|.+|++..  +.  .+..+..      +......+.|+|++++++
T Consensus       165 ~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ly  243 (330)
T PRK11028        165 EPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLY  243 (330)
T ss_pred             CCCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEE
Confidence                11  122334456665 466665555 489999999973  32  2333322      122345689999999888


Q ss_pred             Eec-CCCcEEEecCCCC
Q 018784          287 SGS-EDGTIRIWQTNPP  302 (350)
Q Consensus       287 sgs-~Dg~v~vw~~~~~  302 (350)
                      ++. .++.|.+|++...
T Consensus       244 v~~~~~~~I~v~~i~~~  260 (330)
T PRK11028        244 ACDRTASLISVFSVSED  260 (330)
T ss_pred             EecCCCCeEEEEEEeCC
Confidence            775 4789999998543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.70  E-value=7.7e-16  Score=127.13  Aligned_cols=196  Identities=16%  Similarity=0.259  Sum_probs=153.0

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc---eeeeccCccCCeEEEEECCCC-cEEEEeeCCCeEEEee
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---WIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWD   89 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~---~~~~l~gH~~~V~~v~~~~~~-~~l~s~s~Dg~v~vWd   89 (350)
                      .|-.|+++..++-..|.  ++.+.|-|.++.|||++++.   ..+.|-+|...|+-++|...+ ..|||.|.||+||++|
T Consensus       148 ~~~aPlTSFDWne~dp~--~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFD  225 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPN--LIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFD  225 (364)
T ss_pred             ccCCcccccccccCCcc--eeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEE
Confidence            46678888888876554  99999999999999999863   467889999999999998754 5889999999999999


Q ss_pred             CCCCCeeeee-ec---cccEeEEEEcCC-CCeEEEeeCC-CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEE
Q 018784           90 ALTGDEKHSF-EH---KHIVRACAFSED-THLLLTGGFE-KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (350)
Q Consensus        90 ~~~~~~~~~~-~h---~~~V~~~~~~~~-~~~l~sg~~d-~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s  163 (350)
                      +...+....+ +.   .....-++|+++ -+++|+-..| ..|.|-|++.+..+...+..|.+.|..++|.|.....+++
T Consensus       226 LR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hict  305 (364)
T KOG0290|consen  226 LRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICT  305 (364)
T ss_pred             ecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeee
Confidence            8765533322 21   234566777764 4667775544 5688999998888888889999999999999999999999


Q ss_pred             EeCCCeEEEEECCCCc------eeEeecCCCCeEEEEEec-CCcEEEEEcCCcEE
Q 018784          164 CTDSGGVRLWDARSGK------IVQTLETKSPVTSAEVSR-DGRYITTADGSSVK  211 (350)
Q Consensus       164 ~~~dg~i~iwd~~~~~------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~i~  211 (350)
                      |++|..+.+||+.+.-      ++.......+|+.+.|++ ...+++...++.+.
T Consensus       306 aGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kkle  360 (364)
T KOG0290|consen  306 AGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLE  360 (364)
T ss_pred             cCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCeee
Confidence            9999999999997532      233334567899999985 56777766655543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.70  E-value=3e-15  Score=128.74  Aligned_cols=240  Identities=19%  Similarity=0.303  Sum_probs=158.3

Q ss_pred             CCeEEEEECCCCc-EEEEeeCCCeEEEeeCCCCCee------ee---e-eccccEeEEEEcCCCCeEEEeeCCCeEEEEE
Q 018784           62 GAVWSCCLDANAL-FSASGSADFTAKLWDALTGDEK------HS---F-EHKHIVRACAFSEDTHLLLTGGFEKILRIFD  130 (350)
Q Consensus        62 ~~V~~v~~~~~~~-~l~s~s~Dg~v~vWd~~~~~~~------~~---~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd  130 (350)
                      .+|..+.|.++.. .+|||+.|..||+|-++.+...      ..   + .|...|+++.|+|+|.+|++|+.+|.|.+|.
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk   93 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK   93 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence            6788899988776 9999999999999987654321      11   2 4889999999999999999999999999997


Q ss_pred             CCCC------C---------CCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEE
Q 018784          131 LNRP------D---------APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAE  194 (350)
Q Consensus       131 ~~~~------~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~  194 (350)
                      ....      .         ...+....|...++.++|++ ++.++++++.|+++++||++.|+....+.. ...+.-++
T Consensus        94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva  172 (434)
T KOG1009|consen   94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA  172 (434)
T ss_pred             ecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence            6510      0         01123345778899999985 566788889999999999999999888765 46788899


Q ss_pred             EecCCcEEEE-EcCCcEEEEECCCcceeeeee------------------------cCCCCceeEecCCCCcEEEEecC-
Q 018784          195 VSRDGRYITT-ADGSSVKFWDANHFGLVKGYN------------------------MPCNTESASLEPKLGNIFIAGGE-  248 (350)
Q Consensus       195 ~~~~~~~l~~-~~~~~i~vwd~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~l~sg~~-  248 (350)
                      |.|-++++++ +.++..+.+.+...+.++...                        ++......+|.| +|.+|++.+. 
T Consensus       173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP-dG~llvtPag~  251 (434)
T KOG1009|consen  173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP-DGSLLVTPAGL  251 (434)
T ss_pred             cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCC-CCcEEEcccce
Confidence            9998887765 345545555443322221111                        111112234443 4666665442 


Q ss_pred             ---C-----CeEEEEEccc-CeeEEeecCCCcCEEEEEEcCC------------------CCEEEEecCCCcEEEecCCC
Q 018784          249 ---D-----MWVHVFDFHT-GEQIGCNKGHHGPVHCVRFSPG------------------GESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       249 ---d-----~~i~v~d~~~-~~~~~~~~~h~~~v~~l~~sp~------------------~~~lasgs~Dg~v~vw~~~~  301 (350)
                         +     +.-++|+-.. .++...+.+...++..++|+|-                  +-.+|.+.. ..|++||...
T Consensus       252 ~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~  330 (434)
T KOG1009|consen  252 FKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQT  330 (434)
T ss_pred             eeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEecccc
Confidence               1     2234554332 2334455555666677777651                  122444444 4799999866


Q ss_pred             CCc
Q 018784          302 PNH  304 (350)
Q Consensus       302 ~~~  304 (350)
                      ...
T Consensus       331 ~~P  333 (434)
T KOG1009|consen  331 LEP  333 (434)
T ss_pred             ccc
Confidence            443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.69  E-value=1.4e-13  Score=124.32  Aligned_cols=272  Identities=14%  Similarity=0.126  Sum_probs=173.5

Q ss_pred             EEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcC
Q 018784           33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE  112 (350)
Q Consensus        33 ~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~  112 (350)
                      ++++-..++++.+.|..+.+.+..+....+.-..+.+++|++++..++.||.|.++|+.+.+.+.++.......++++++
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~   87 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP   87 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC
Confidence            34566778999999999999999998654433346789999999999999999999999999888888777789999999


Q ss_pred             CCCeEEEee-CCCeEEEEECCCCCCCCeeec------CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCcee--Ee
Q 018784          113 DTHLLLTGG-FEKILRIFDLNRPDAPPREVG------NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV--QT  183 (350)
Q Consensus       113 ~~~~l~sg~-~d~~v~vwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~--~~  183 (350)
                      +|++++++. ..+.+.++|..+.+.......      .....+..+..++....++++--+-+.|.+-|....+.+  ..
T Consensus        88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~  167 (369)
T PF02239_consen   88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT  167 (369)
T ss_dssp             TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE
T ss_pred             CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee
Confidence            999998775 589999999876443222111      123456677666666656666666688888887765433  44


Q ss_pred             ecCCCCeEEEEEecCCcEEEEE--cCCcEEEEECCCcceeeeee------------------------------------
Q 018784          184 LETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANHFGLVKGYN------------------------------------  225 (350)
Q Consensus       184 ~~~~~~v~~~~~~~~~~~l~~~--~~~~i~vwd~~~~~~~~~~~------------------------------------  225 (350)
                      +..........|+|+++++.++  ....|-++|..+.+.+....                                    
T Consensus       168 i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig  247 (369)
T PF02239_consen  168 IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIG  247 (369)
T ss_dssp             EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred             ecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceeccccc
Confidence            5555667788999999876554  24567777776654432211                                    


Q ss_pred             -------------------cCCCCceeEecCCCCcEEEEe----cCCCeEEEEEcccCeeEEeecCC-CcCEEEEEEcCC
Q 018784          226 -------------------MPCNTESASLEPKLGNIFIAG----GEDMWVHVFDFHTGEQIGCNKGH-HGPVHCVRFSPG  281 (350)
Q Consensus       226 -------------------~~~~~~~~~~~~~~~~~l~sg----~~d~~i~v~d~~~~~~~~~~~~h-~~~v~~l~~sp~  281 (350)
                                         .......+..+| +++++.+.    ...+.|.++|..+.+.+.++... ...+..+.|+++
T Consensus       248 ~~~v~v~d~~~wkvv~~I~~~G~glFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~d  326 (369)
T PF02239_consen  248 TDPVSVHDDYAWKVVKTIPTQGGGLFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPD  326 (369)
T ss_dssp             --TTT-STTTBTSEEEEEE-SSSS--EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TT
T ss_pred             CCccccchhhcCeEEEEEECCCCcceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCC
Confidence                               000111112233 34455554    45678999999999877776532 235999999999


Q ss_pred             CCEEEEecC--CCcEEEecCCCCCcc
Q 018784          282 GESYASGSE--DGTIRIWQTNPPNHE  305 (350)
Q Consensus       282 ~~~lasgs~--Dg~v~vw~~~~~~~~  305 (350)
                      |+.+..+..  ++.|.++|..+.+..
T Consensus       327 G~~v~vS~~~~~~~i~v~D~~Tl~~~  352 (369)
T PF02239_consen  327 GKEVWVSVWDGNGAIVVYDAKTLKEK  352 (369)
T ss_dssp             SSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             CCEEEEEEecCCCEEEEEECCCcEEE
Confidence            997654333  337999998665543

...

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=5.6e-15  Score=126.67  Aligned_cols=250  Identities=18%  Similarity=0.235  Sum_probs=171.3

Q ss_pred             eeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC------CCeeeee--eccccEeEEEEcCCCCeEEEeeCCC
Q 018784           53 WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT------GDEKHSF--EHKHIVRACAFSEDTHLLLTGGFEK  124 (350)
Q Consensus        53 ~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~------~~~~~~~--~h~~~V~~~~~~~~~~~l~sg~~d~  124 (350)
                      +.+.+.+|.+.|.++.|+.++++||+||.|..+++|++..      .+++...  .|...|.|++|.....++++|+.++
T Consensus        48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~  127 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG  127 (609)
T ss_pred             hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence            3456789999999999999999999999999999999742      2333333  3667899999999999999999999


Q ss_pred             eEEEEECCCCCCCCee-ecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCc----eeEeecCCCCeEEEEEecCC
Q 018784          125 ILRIFDLNRPDAPPRE-VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK----IVQTLETKSPVTSAEVSRDG  199 (350)
Q Consensus       125 ~v~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~  199 (350)
                      +|..-|+++.+..-.. .....+.|+.+...|.+ .++++.++++.|.+||.+...    ++..........++.|+|..
T Consensus       128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~  206 (609)
T KOG4227|consen  128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET  206 (609)
T ss_pred             eeEeeecccceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence            9999999865433211 12234578888877764 566677899999999998654    33333345567788899865


Q ss_pred             -cEEEEE-cCCcEEEEECCCcce-eeeee----cCC--CC-ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCC
Q 018784          200 -RYITTA-DGSSVKFWDANHFGL-VKGYN----MPC--NT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGH  269 (350)
Q Consensus       200 -~~l~~~-~~~~i~vwd~~~~~~-~~~~~----~~~--~~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h  269 (350)
                       .+|++. ..+.+.+||.+.... +..+.    ++.  .. ....+.+ .|..|++--...--.+||+-+.++......|
T Consensus       207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~-~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~  285 (609)
T KOG4227|consen  207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP-SGNQFMSIRRGKCPLYFDFISQRCFVLKSDH  285 (609)
T ss_pred             ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC-CCCeehhhhccCCCEEeeeecccceeEeccC
Confidence             344443 456799999986532 11111    111  11 1223333 4666666555555567887765443222222


Q ss_pred             -------CcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784          270 -------HGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       270 -------~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~  305 (350)
                             ...+.+++|..+.. +++||.+=-|++|.+......
T Consensus       286 N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds  327 (609)
T KOG4227|consen  286 NPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDS  327 (609)
T ss_pred             CCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccc
Confidence                   23577889976644 999999999999998654443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.66  E-value=9.6e-14  Score=112.18  Aligned_cols=198  Identities=16%  Similarity=0.169  Sum_probs=139.8

Q ss_pred             ceeEe-eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeC----CCC--ceee--eccCcc-----CCeEEEEECCCC
Q 018784            8 VPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG----ETG--DWIG--TFEGHK-----GAVWSCCLDANA   73 (350)
Q Consensus         8 ~~~~~-~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~----~~~--~~~~--~l~gH~-----~~V~~v~~~~~~   73 (350)
                      ++.|. ++|.+|++.+.|..     .+|++|+ ||.|+=|.-    ++.  +.+.  ...-|.     ..|+++.+.|..
T Consensus        53 ~~iv~eqahdgpiy~~~f~d-----~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e  126 (325)
T KOG0649|consen   53 LKIVPEQAHDGPIYYLAFHD-----DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE  126 (325)
T ss_pred             cceeeccccCCCeeeeeeeh-----hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC
Confidence            34443 89999999999973     3666665 488886541    111  1111  112243     347888899887


Q ss_pred             cEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee--------ecCC
Q 018784           74 LFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE--------VGNS  144 (350)
Q Consensus        74 ~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~--------~~~~  144 (350)
                      .-++.++.|+.+.-||+++++....+ .|+..|.++........+++|+.||++|+||+.+++.....        ..++
T Consensus       127 nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~  206 (325)
T KOG0649|consen  127 NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPD  206 (325)
T ss_pred             CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcc
Confidence            77777789999999999999988777 59999999998666667899999999999999865432211        1111


Q ss_pred             -CCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECC
Q 018784          145 -SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDAN  216 (350)
Q Consensus       145 -~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~  216 (350)
                       ...|-+++-   +...++.|+. ..+.+|.+++.++...+..+.++..+.|..+ ..++++.++.|.-|.+.
T Consensus       207 ~g~wigala~---~edWlvCGgG-p~lslwhLrsse~t~vfpipa~v~~v~F~~d-~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  207 WGKWIGALAV---NEDWLVCGGG-PKLSLWHLRSSESTCVFPIPARVHLVDFVDD-CVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             cCceeEEEec---cCceEEecCC-CceeEEeccCCCceEEEecccceeEeeeecc-eEEEeccccceeeeeec
Confidence             223444442   3445554443 6899999999999999998888988888765 45556667788888764

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.66  E-value=1.6e-15  Score=135.45  Aligned_cols=205  Identities=21%  Similarity=0.265  Sum_probs=141.2

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeC------CC----CceeeeccCccCCeEEEEECCCCcEEEEeeC
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG------ET----GDWIGTFEGHKGAVWSCCLDANALFSASGSA   81 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~------~~----~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~   81 (350)
                      +++|.+||.|+++.+   .+..+.+|+-||+|+.|++      .+    ......|.||++.||.++++.....|+++|.
T Consensus       340 fraH~gPVl~v~v~~---n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~  416 (577)
T KOG0642|consen  340 FRAHEGPVLCVVVPS---NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSS  416 (577)
T ss_pred             EecccCceEEEEecC---CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecC
Confidence            699999999999876   8999999999999999943      22    1345678999999999999999999999999


Q ss_pred             CCeEEEeeCCCCCeeeeee---ccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCCCCeee------cCCCCcEEEE
Q 018784           82 DFTAKLWDALTGDEKHSFE---HKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREV------GNSSGSIRTV  151 (350)
Q Consensus        82 Dg~v~vWd~~~~~~~~~~~---h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~~~~------~~~~~~v~~~  151 (350)
                      ||++|.|+...... .++.   -.+...+++|.... .+.++...-+.--++++..........      ......+..+
T Consensus       417 DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~v  495 (577)
T KOG0642|consen  417 DGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKV  495 (577)
T ss_pred             CceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceE
Confidence            99999999765544 3332   22345566665443 222222222222222222111110000      0011234444


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCccee
Q 018784          152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLV  221 (350)
Q Consensus       152 ~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~  221 (350)
                      .+ ++...+.+++.+|++|+++|..+++.++.... ...++++++.|+|-+|.++ .++.+++|.+....++
T Consensus       496 Vs-~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~  566 (577)
T KOG0642|consen  496 VS-HPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV  566 (577)
T ss_pred             Ee-cCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence            44 45567888999999999999999998877764 4678999999999887665 5899999987554443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.66  E-value=6.1e-14  Score=117.48  Aligned_cols=202  Identities=13%  Similarity=0.160  Sum_probs=157.8

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC---CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET---GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~---~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd   89 (350)
                      +--.+||+|.+|++   |+..+|.+-+...+.||....   .+..++|..|...|++++|.|....++|++.|..-.||.
T Consensus         7 ~~~~~pitchAwn~---drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~   83 (361)
T KOG1523|consen    7 HRLLEPITCHAWNS---DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWT   83 (361)
T ss_pred             eeccCceeeeeecC---CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccc
Confidence            33467999999986   999999999999999988654   456789999999999999999999999999999999999


Q ss_pred             CC-CCC---eeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC---eeecCCCCcEEEEEEeCCCCcEEE
Q 018784           90 AL-TGD---EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP---REVGNSSGSIRTVAWLHSDQTILS  162 (350)
Q Consensus        90 ~~-~~~---~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~  162 (350)
                      .. .+.   .+..+.++..++++.|+|..+.|++||..+.|.||=.+....-.   .........|.++.|.+ .+-+++
T Consensus        84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLla  162 (361)
T KOG1523|consen   84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLA  162 (361)
T ss_pred             cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-Ccceec
Confidence            83 333   23445799999999999999999999999999999876433211   12234566789999964 677888


Q ss_pred             EEeCCCeEEEEECC-----C-------------CceeEee-cCCCCeEEEEEecCCcEEE-EEcCCcEEEEECCCc
Q 018784          163 SCTDSGGVRLWDAR-----S-------------GKIVQTL-ETKSPVTSAEVSRDGRYIT-TADGSSVKFWDANHF  218 (350)
Q Consensus       163 s~~~dg~i~iwd~~-----~-------------~~~~~~~-~~~~~v~~~~~~~~~~~l~-~~~~~~i~vwd~~~~  218 (350)
                      .|+-|++++++..-     .             |+.+.++ ...+.+..+.|+|+|..|+ .+.|..+.+-|....
T Consensus       163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence            89999999998532     1             1122223 2345688999999997765 677888888887554

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.66  E-value=1.8e-15  Score=136.83  Aligned_cols=123  Identities=23%  Similarity=0.206  Sum_probs=104.9

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC-------ceeeeccCccCCeEEEEECCC-CcEEEEeeCCCeEEE
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKL   87 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~-------~~~~~l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~v   87 (350)
                      ...|+++.|+|+  |-..||.|+.|+.|+||.+..+       .+.+.|.+|...|+++.|+|- ...|++++.|-+|++
T Consensus       627 gt~vtDl~WdPF--D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~l  704 (1012)
T KOG1445|consen  627 GTLVTDLHWDPF--DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIEL  704 (1012)
T ss_pred             CceeeecccCCC--ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeee
Confidence            346788888986  4458999999999999997653       345678899999999999984 568899999999999


Q ss_pred             eeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee
Q 018784           88 WDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE  140 (350)
Q Consensus        88 Wd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~  140 (350)
                      ||+.+......+ .|++.|..++|+|+|+.+++.+.|++|++|+..+...+...
T Consensus       705 WDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~E  758 (1012)
T KOG1445|consen  705 WDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYE  758 (1012)
T ss_pred             eehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcccc
Confidence            999988876665 79999999999999999999999999999998876655433

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=2e-14  Score=133.52  Aligned_cols=210  Identities=18%  Similarity=0.112  Sum_probs=137.8

Q ss_pred             CCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCC---CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCC
Q 018784           82 DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE---KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ  158 (350)
Q Consensus        82 Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d---~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (350)
                      +..|++||...........|...+.+..|+|+|+.|+..+.+   ..|.+||+.++...  ......+....++|+|++.
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~--~l~~~~g~~~~~~wSPDG~  260 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK--VVASFRGHNGAPAFSPDGS  260 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE--EEecCCCccCceeECCCCC
Confidence            579999998655544444677789999999999999887654   46999999764321  1222233445688988766


Q ss_pred             cEEEEEeCCCeEEE--EECCCCceeEeecCCCCeEEEEEecCCcEEEE-E-cCCcEEEEECCCcc-eeeeeecCCCCcee
Q 018784          159 TILSSCTDSGGVRL--WDARSGKIVQTLETKSPVTSAEVSRDGRYITT-A-DGSSVKFWDANHFG-LVKGYNMPCNTESA  233 (350)
Q Consensus       159 ~~~~s~~~dg~i~i--wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~~~~i~vwd~~~~~-~~~~~~~~~~~~~~  233 (350)
                      .++++...+|.+.|  ||+.+++..........+....|+|||+.++. + .++..++|++.... .........  ...
T Consensus       261 ~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~  338 (429)
T PRK01742        261 RLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSA  338 (429)
T ss_pred             EEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCc
Confidence            67766667776555  46666654333333445678899999987654 3 35677888754321 112121111  233


Q ss_pred             EecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          234 SLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       234 ~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                      .+.| +++.++..+.++ +.+||+.++........+  ...++.|+|+|++|+.++.++.+.+|.+
T Consensus       339 ~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        339 QISA-DGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             cCCC-CCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence            4444 577777766655 556999888654322222  2356889999999999999998888875

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.66  E-value=1.6e-14  Score=137.47  Aligned_cols=236  Identities=20%  Similarity=0.274  Sum_probs=161.1

Q ss_pred             EEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeec----cccEeEEEEcC--CCCeEEEeeCCCeEEEEECCCCC-CC
Q 018784           65 WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH----KHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPD-AP  137 (350)
Q Consensus        65 ~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h----~~~V~~~~~~~--~~~~l~sg~~d~~v~vwd~~~~~-~~  137 (350)
                      ..+.|+|-...++++...-.|+|||-+.++....+..    ...|..+.+-.  |..++++|+.||.||||+--... ..
T Consensus      1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~ 1147 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKK 1147 (1387)
T ss_pred             ceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCC
Confidence            3556777777788887778999999998887766642    34688888744  56789999999999999742111 11


Q ss_pred             Ceee----------cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC--CCeEEEEEe-cCCcEEEE
Q 018784          138 PREV----------GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK--SPVTSAEVS-RDGRYITT  204 (350)
Q Consensus       138 ~~~~----------~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~-~~~~~l~~  204 (350)
                      .+..          ....+.-.-+.|....+.++++| +-+.|+|||......+..+...  ..++++.-+ ..|.++++
T Consensus      1148 ~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~A 1226 (1387)
T KOG1517|consen 1148 PELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAA 1226 (1387)
T ss_pred             ceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEE
Confidence            1111          11112223456766667666665 4689999999988888777653  456666544 34577665


Q ss_pred             E-cCCcEEEEECCCcce---eeeeecCC---CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEE--eecCCC--c-C
Q 018784          205 A-DGSSVKFWDANHFGL---VKGYNMPC---NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG--CNKGHH--G-P  272 (350)
Q Consensus       205 ~-~~~~i~vwd~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~--~~~~h~--~-~  272 (350)
                      + .||.||+||.|....   +..+.-+.   ......+.+..-..+++|+.||.|++||++......  +...|.  + .
T Consensus      1227 GfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~ 1306 (1387)
T KOG1517|consen 1227 GFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSA 1306 (1387)
T ss_pred             eecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCcc
Confidence            5 689999999876432   22222221   233445555433479999999999999998743322  233443  3 5


Q ss_pred             EEEEEEcCCCCEEEEecCCCcEEEecCCCC
Q 018784          273 VHCVRFSPGGESYASGSEDGTIRIWQTNPP  302 (350)
Q Consensus       273 v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~  302 (350)
                      .++|..+++.+.+|||+. +.|+||++...
T Consensus      1307 lTal~VH~hapiiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1307 LTALTVHEHAPIIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred             ceeeeeccCCCeeeecCc-ceEEEEecChh
Confidence            899999999999999999 99999998643

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.65  E-value=5.4e-15  Score=131.37  Aligned_cols=167  Identities=14%  Similarity=0.246  Sum_probs=125.9

Q ss_pred             cEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEE
Q 018784           32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAF  110 (350)
Q Consensus        32 ~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~  110 (350)
                      ..++..|+||.+.|.+ ..++..+..++|.+.|.+-.|+++|.-|+|+|.||.|++|.- +|-.+.++ ....+|+|++|
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W  153 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARW  153 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEE
Confidence            4778889999999876 567888899999999999999999999999999999999984 33333333 35578999999


Q ss_pred             cCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCe
Q 018784          111 SEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPV  190 (350)
Q Consensus       111 ~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v  190 (350)
                      .|+.+.++-+.. +.+.|=.+.. ......-..|.+-|.++.|++ ...++++|++|-..++||-...-......+..+|
T Consensus       154 ~p~S~~vl~c~g-~h~~IKpL~~-n~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~I  230 (737)
T KOG1524|consen  154 APNSNSIVFCQG-GHISIKPLAA-NSKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAI  230 (737)
T ss_pred             CCCCCceEEecC-CeEEEeeccc-ccceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCcccccCChhccce
Confidence            998765543332 3444444432 233344578999999999986 4568889999999999996533333334456799


Q ss_pred             EEEEEecCCcEEE
Q 018784          191 TSAEVSRDGRYIT  203 (350)
Q Consensus       191 ~~~~~~~~~~~l~  203 (350)
                      ++++|+|+..+++
T Consensus       231 TSva~npd~~~~v  243 (737)
T KOG1524|consen  231 TSVAFNPEKDYLL  243 (737)
T ss_pred             eeeeeccccceee
Confidence            9999999944443

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=1.1e-14  Score=122.94  Aligned_cols=188  Identities=17%  Similarity=0.281  Sum_probs=142.8

Q ss_pred             CeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCC-CCcEEEEEeCCCeEEEEECCCCceeEeec--CC--CC
Q 018784          115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS-DQTILSSCTDSGGVRLWDARSGKIVQTLE--TK--SP  189 (350)
Q Consensus       115 ~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~s~~~dg~i~iwd~~~~~~~~~~~--~~--~~  189 (350)
                      ..+|++-..+.|++||..+++ ....++.+...+..+.|... ....+.+|+.||+|++||+|+......+.  .+  .+
T Consensus        41 ~~vav~lSngsv~lyd~~tg~-~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~  119 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQ-LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP  119 (376)
T ss_pred             eeEEEEecCCeEEEEeccchh-hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence            458888999999999998744 34555667777888888865 56788999999999999999876555443  23  35


Q ss_pred             eEEEEEecCCcEEEEEc-----CCcEEEEECCCcce-eeeeec--CCCCceeEecCCCCcEEEEecCCCeEEEEEcccCe
Q 018784          190 VTSAEVSRDGRYITTAD-----GSSVKFWDANHFGL-VKGYNM--PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (350)
Q Consensus       190 v~~~~~~~~~~~l~~~~-----~~~i~vwd~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~  261 (350)
                      ..+++..-++.+++++.     +-.+.+||.|..+. +..+.-  ......+.|.|.++++|++||.||.|.+||+....
T Consensus       120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence            56666665777887764     45799999998765 443322  23356778999999999999999999999987543


Q ss_pred             ---eEEeecCCCcCEEEEEEcCCC-CEEEEecCCCcEEEecCCCCC
Q 018784          262 ---QIGCNKGHHGPVHCVRFSPGG-ESYASGSEDGTIRIWQTNPPN  303 (350)
Q Consensus       262 ---~~~~~~~h~~~v~~l~~sp~~-~~lasgs~Dg~v~vw~~~~~~  303 (350)
                         .+.....|...|.++.|+.++ +.+.+-+...+..+|++....
T Consensus       200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence               233445688889999999876 458888999999999986544

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.65  E-value=4.1e-13  Score=114.59  Aligned_cols=238  Identities=15%  Similarity=0.128  Sum_probs=155.0

Q ss_pred             CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEE--EECCCCcEEEEeeCCCeEEEeeCCCCC
Q 018784           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSC--CLDANALFSASGSADFTAKLWDALTGD   94 (350)
Q Consensus        17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v--~~~~~~~~l~s~s~Dg~v~vWd~~~~~   94 (350)
                      ..+....|+.   |+..|..|+.||. ++++.+........  -.+.+.-+  .|+.+=..+++...-..+++.+.....
T Consensus         6 ~ti~~~~~Nq---d~~~lsvGs~~Gy-k~~~~~~~~k~~~~--~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~   79 (391)
T KOG2110|consen    6 PTINFIGFNQ---DSTLLSVGSKDGY-KIFSCSPFEKCFSK--DTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKT   79 (391)
T ss_pred             cceeeeeecc---ceeEEEccCCCce-eEEecCchHHhhcc--cCCCeEEEEeecccceeEEEecCCCceEEEEEcccCc
Confidence            3455555665   8889999999997 78877665442222  22333333  344333334444333458888888777


Q ss_pred             eeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee--cCCCCcEEEEEEeCCCCcEEEEEe-CCCeEE
Q 018784           95 EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV--GNSSGSIRTVAWLHSDQTILSSCT-DSGGVR  171 (350)
Q Consensus        95 ~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~s~~-~dg~i~  171 (350)
                      .+..+.-+..|.++.++-+.  |+++-.+. |.|||+..........  ..+...+.++..++.+..++.-++ ..|.|.
T Consensus        80 ~ICe~~fpt~IL~VrmNr~R--LvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~  156 (391)
T KOG2110|consen   80 TICEIFFPTSILAVRMNRKR--LVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV  156 (391)
T ss_pred             eEEEEecCCceEEEEEccce--EEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence            77777777789999988554  66555544 9999998655433222  123333444444433334444333 338899


Q ss_pred             EEECCCCceeEeecC-CCCeEEEEEecCCcEEEEEcC-C-cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecC
Q 018784          172 LWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADG-S-SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE  248 (350)
Q Consensus       172 iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~  248 (350)
                      +||+.+-+.+..+.. .+++.+++|+++|.+|+++++ | .|||+.+..+..+..                         
T Consensus       157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e-------------------------  211 (391)
T KOG2110|consen  157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE-------------------------  211 (391)
T ss_pred             EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee-------------------------
Confidence            999999888888875 578899999999988887764 2 466666544332222                         


Q ss_pred             CCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCC
Q 018784          249 DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPN  303 (350)
Q Consensus       249 d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~  303 (350)
                              ++.|.       -...|++++|+|++++|++.|.-++|.++.+....
T Consensus       212 --------FRRG~-------~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  212 --------FRRGT-------YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             --------eeCCc-------eeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence                    11111       12358999999999999999999999999987554

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=3.3e-15  Score=131.29  Aligned_cols=254  Identities=20%  Similarity=0.280  Sum_probs=187.2

Q ss_pred             eeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee--eccccEeEEEEcCC--CCeEEEeeCCCeEEEE
Q 018784           54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF--EHKHIVRACAFSED--THLLLTGGFEKILRIF  129 (350)
Q Consensus        54 ~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~--~h~~~V~~~~~~~~--~~~l~sg~~d~~v~vw  129 (350)
                      ...|.+|.+.|..|.|...|..++|||.|..|.+||-..+..+..+  .|...|....|-|+  ...+++.+.||.+++=
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s  214 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS  214 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence            3567899999999999999999999999999999999888877766  48888888888773  4678999999999988


Q ss_pred             ECCCC-CC-CCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec---CC-C---CeEEEEEecCCc
Q 018784          130 DLNRP-DA-PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE---TK-S---PVTSAEVSRDGR  200 (350)
Q Consensus       130 d~~~~-~~-~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~---~~-~---~v~~~~~~~~~~  200 (350)
                      .+... .. ..+....|.+.+..++..|....-+.+|+.|+.++-.|++.+.+...+.   .+ .   ....++..|...
T Consensus       215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt  294 (559)
T KOG1334|consen  215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT  294 (559)
T ss_pred             eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence            76432 22 2456678999999999888888889999999999999999875433332   22 2   456777887654


Q ss_pred             --EEEEEcCCcEEEEECCCccee------eee-------ecCCCCceeEecCCCCcEEEEecCCCeEEEEEcc--cC---
Q 018784          201 --YITTADGSSVKFWDANHFGLV------KGY-------NMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH--TG---  260 (350)
Q Consensus       201 --~l~~~~~~~i~vwd~~~~~~~------~~~-------~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~--~~---  260 (350)
                        +.+.+.+..+++||.+.....      +.+       ..+.+...+.+.. .+.-+++...|-.|+++.-.  .|   
T Consensus       295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh-~~sElLaSYnDe~IYLF~~~~~~G~~p  373 (559)
T KOG1334|consen  295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSH-DGSELLASYNDEDIYLFNKSMGDGSEP  373 (559)
T ss_pred             cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecC-CccceeeeecccceEEeccccccCCCC
Confidence              344567889999998764322      211       1122333344443 35566677788889999533  33   


Q ss_pred             -------eeEEe-ecCCCc--CEEEEEEc-CCCCEEEEecCCCcEEEecCCCCCcccCC
Q 018784          261 -------EQIGC-NKGHHG--PVHCVRFS-PGGESYASGSEDGTIRIWQTNPPNHEENH  308 (350)
Q Consensus       261 -------~~~~~-~~~h~~--~v~~l~~s-p~~~~lasgs~Dg~v~vw~~~~~~~~~~~  308 (350)
                             ..+.. ++||..  .|..+-|- |...|++|||..|.|.||+-...+.+...
T Consensus       374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M  432 (559)
T KOG1334|consen  374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM  432 (559)
T ss_pred             CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh
Confidence                   22333 678864  47777764 88899999999999999998766665443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=8.3e-15  Score=126.76  Aligned_cols=190  Identities=23%  Similarity=0.218  Sum_probs=141.0

Q ss_pred             eEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee
Q 018784           20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF   99 (350)
Q Consensus        20 ~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~   99 (350)
                      ..++|++   +|..|++|+.||++|||+..+-..+.....|.+.|..+.|+||++++++-+.| ..+||+..++..+...
T Consensus       148 k~vaf~~---~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~  223 (398)
T KOG0771|consen  148 KVVAFNG---DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK  223 (398)
T ss_pred             eEEEEcC---CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence            4677775   99999999999999999966666666778899999999999999999999999 9999999998554443


Q ss_pred             e---ccccEeEEEEcCCC---CeEE--EeeCCCeEEEEECCCCCC----CCeeecCCCCcEEEEEEeCCCCcEEEEEeCC
Q 018784          100 E---HKHIVRACAFSEDT---HLLL--TGGFEKILRIFDLNRPDA----PPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (350)
Q Consensus       100 ~---h~~~V~~~~~~~~~---~~l~--sg~~d~~v~vwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d  167 (350)
                      .   -+.....|.|+.++   .+.+  .-..-+.|+.|++.....    +..........+.+++.+ .++++++-|+.|
T Consensus       224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS-~dGkf~AlGT~d  302 (398)
T KOG0771|consen  224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS-DDGKFLALGTMD  302 (398)
T ss_pred             CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc-CCCcEEEEeccC
Confidence            2   33456788888776   3333  334456677777643222    222223334578888876 577888899999


Q ss_pred             CeEEEEECCCCceeEeec--CCCCeEEEEEecCCcEEEE-EcCCcEEEEE
Q 018784          168 GGVRLWDARSGKIVQTLE--TKSPVTSAEVSRDGRYITT-ADGSSVKFWD  214 (350)
Q Consensus       168 g~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~-~~~~~i~vwd  214 (350)
                      |.|.|++..+-+.+.-.+  |..-|+.+.|+|+.++++. +.+....+.-
T Consensus       303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~  352 (398)
T KOG0771|consen  303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK  352 (398)
T ss_pred             CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence            999999998887766665  3457999999999888764 3455555543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.62  E-value=6.7e-14  Score=127.47  Aligned_cols=228  Identities=17%  Similarity=0.265  Sum_probs=164.2

Q ss_pred             CeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee
Q 018784           63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV  141 (350)
Q Consensus        63 ~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~  141 (350)
                      .|+.++|.|||..|+-+ .+..+-++|...|....++ .|+..|++++|+.+|+.+++|+.|..|.+|...-   .....
T Consensus        14 ci~d~afkPDGsqL~lA-Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~Lk   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILA-AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILK   89 (1081)
T ss_pred             chheeEECCCCceEEEe-cCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cceee
Confidence            78899999999876654 4667899999999877776 6999999999999999999999999999997532   22233


Q ss_pred             cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcce
Q 018784          142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGL  220 (350)
Q Consensus       142 ~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~  220 (350)
                      -.|...|.++.|.|- ...+++|+- ...-+|...... +........+.+++|..||++++.+ .+|+|.+-+......
T Consensus        90 YSH~D~IQCMsFNP~-~h~LasCsL-sdFglWS~~qK~-V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek  166 (1081)
T KOG1538|consen   90 YSHNDAIQCMSFNPI-THQLASCSL-SDFGLWSPEQKS-VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK  166 (1081)
T ss_pred             eccCCeeeEeecCch-HHHhhhcch-hhccccChhhhh-HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence            457889999998764 445667765 357788765432 2233334578889999999999877 478888775433222


Q ss_pred             eeeeecC----CCCceeEecCCC----CcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCC
Q 018784          221 VKGYNMP----CNTESASLEPKL----GNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG  292 (350)
Q Consensus       221 ~~~~~~~----~~~~~~~~~~~~----~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg  292 (350)
                      ++ +.-|    .+..++.++|..    ..++++.....++-+|.+. |+.+..-..-.-...|+.+.|+|.++..|+.|+
T Consensus       167 ~~-I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk  244 (1081)
T KOG1538|consen  167 VK-IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDK  244 (1081)
T ss_pred             eE-EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCC
Confidence            11 2211    233455566543    2567777777777777764 555543334444568899999999999999999


Q ss_pred             cEEEecC
Q 018784          293 TIRIWQT  299 (350)
Q Consensus       293 ~v~vw~~  299 (350)
                      .+.++..
T Consensus       245 ~L~~fTR  251 (1081)
T KOG1538|consen  245 QLSLFTR  251 (1081)
T ss_pred             ceEEEee
Confidence            9999964

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=5.7e-13  Score=123.74  Aligned_cols=236  Identities=17%  Similarity=0.111  Sum_probs=147.1

Q ss_pred             CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCC---CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEE
Q 018784           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL  118 (350)
Q Consensus        42 ~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D---g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~  118 (350)
                      .+.++|. ++.....+..+...+.+.+|+|+++.++..+.+   ..|.+||+.+++........+.+.+.+|+|+|+.|+
T Consensus       177 ~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la  255 (427)
T PRK02889        177 QLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA  255 (427)
T ss_pred             EEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence            4666665 455555666778889999999999988766543   459999998887554433445567889999998876


Q ss_pred             -EeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEEC--CCCceeEeecCCCCeEEEEE
Q 018784          119 -TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA--RSGKIVQTLETKSPVTSAEV  195 (350)
Q Consensus       119 -sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~--~~~~~~~~~~~~~~v~~~~~  195 (350)
                       +.+.++...+|.++........+..+.+......|++++..++.+...++...+|.+  .+++...............|
T Consensus       256 ~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~  335 (427)
T PRK02889        256 VALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRI  335 (427)
T ss_pred             EEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEE
Confidence             567788877776532222233333344455677898877767666555566666654  44443222112223345789


Q ss_pred             ecCCcEEEEEc-C-C--cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCC---eEEEEEcccCeeEEeecC
Q 018784          196 SRDGRYITTAD-G-S--SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM---WVHVFDFHTGEQIGCNKG  268 (350)
Q Consensus       196 ~~~~~~l~~~~-~-~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~---~i~v~d~~~~~~~~~~~~  268 (350)
                      +|+|++++... . +  .|.+||+.+..... +..........+.+ ++++++..+.++   .+++.++ +|+....+..
T Consensus       336 SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~sp-dg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~  412 (427)
T PRK02889        336 SPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAP-NGRYILYATQQGGRSVLAAVSS-DGRIKQRLSV  412 (427)
T ss_pred             CCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECC-CCCEEEEEEecCCCEEEEEEEC-CCCceEEeec
Confidence            99999876432 2 2  69999987765432 22222234456666 466665555433   3555566 4555555555


Q ss_pred             CCcCEEEEEEcCC
Q 018784          269 HHGPVHCVRFSPG  281 (350)
Q Consensus       269 h~~~v~~l~~sp~  281 (350)
                      +.+.+...+|+|-
T Consensus       413 ~~g~~~~p~wsp~  425 (427)
T PRK02889        413 QGGDVREPSWGPF  425 (427)
T ss_pred             CCCCCCCCccCCC
Confidence            6666777778763

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=1.5e-12  Score=120.87  Aligned_cols=233  Identities=16%  Similarity=0.146  Sum_probs=151.8

Q ss_pred             CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEee---CCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEE
Q 018784           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS---ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL  118 (350)
Q Consensus        42 ~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s---~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~  118 (350)
                      .+.++|...... ..+..+...+...+|+|||+.++-.+   .+..|.+|++.+++........+.+....|+|||+.|+
T Consensus       180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La  258 (429)
T PRK03629        180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA  258 (429)
T ss_pred             eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence            577787654443 34555667889999999999877543   34679999998876554444445566789999999887


Q ss_pred             Ee-eCCC--eEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe--EEEEECCCCceeEeecCCCCeEEE
Q 018784          119 TG-GFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG--VRLWDARSGKIVQTLETKSPVTSA  193 (350)
Q Consensus       119 sg-~~d~--~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~--i~iwd~~~~~~~~~~~~~~~v~~~  193 (350)
                      .. +.++  .|.+||+.++..  .....+...+....|+|++..++.+...++.  |.++|+.+++..............
T Consensus       259 ~~~~~~g~~~I~~~d~~tg~~--~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~  336 (429)
T PRK03629        259 FALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDA  336 (429)
T ss_pred             EEEcCCCCcEEEEEECCCCCE--EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCE
Confidence            54 4344  588889875432  2233334456788898877666666554454  444577666543222223344568


Q ss_pred             EEecCCcEEEEE-c-C--CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCe---EEEEEcccCeeEEee
Q 018784          194 EVSRDGRYITTA-D-G--SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMW---VHVFDFHTGEQIGCN  266 (350)
Q Consensus       194 ~~~~~~~~l~~~-~-~--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~---i~v~d~~~~~~~~~~  266 (350)
                      .|+|+|++++.. . +  ..|.+||+.+.... .+..........+.| ++++++..+.++.   ++++++ +|+....+
T Consensus       337 ~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l  413 (429)
T PRK03629        337 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAP-NGTMVIYSSSQGMGSVLNLVST-DGRFKARL  413 (429)
T ss_pred             EECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECC-CCCEEEEEEcCCCceEEEEEEC-CCCCeEEC
Confidence            899999887653 2 2  35888998776533 222222223445555 6788888777664   666676 46666677


Q ss_pred             cCCCcCEEEEEEcC
Q 018784          267 KGHHGPVHCVRFSP  280 (350)
Q Consensus       267 ~~h~~~v~~l~~sp  280 (350)
                      .+|.+.+...+|+|
T Consensus       414 ~~~~~~~~~p~Wsp  427 (429)
T PRK03629        414 PATDGQVKFPAWSP  427 (429)
T ss_pred             ccCCCCcCCcccCC
Confidence            78888899999987

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.59  E-value=3.3e-13  Score=115.93  Aligned_cols=242  Identities=16%  Similarity=0.186  Sum_probs=170.7

Q ss_pred             cCCeEEEEECCCC--cEEEEeeCCCeEEEeeCCCCCeeeeee-------ccccEeEEEEcCCCCeEEEeeCCCeEEEEEC
Q 018784           61 KGAVWSCCLDANA--LFSASGSADFTAKLWDALTGDEKHSFE-------HKHIVRACAFSEDTHLLLTGGFEKILRIFDL  131 (350)
Q Consensus        61 ~~~V~~v~~~~~~--~~l~s~s~Dg~v~vWd~~~~~~~~~~~-------h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~  131 (350)
                      ...|..++|..++  ..+...+.|..+.............+.       ....|..++..  ...|++|-.+|.+.+|..
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~  132 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD  132 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence            3456667775444  456666678788877776655443321       23345544433  346778888999999998


Q ss_pred             CCCCC---CCeeecCCCCcEEEEEEeCCCCcEEEEEeCC--CeEEEEECCCCceeEeecC----------CCCeEEEEEe
Q 018784          132 NRPDA---PPREVGNSSGSIRTVAWLHSDQTILSSCTDS--GGVRLWDARSGKIVQTLET----------KSPVTSAEVS  196 (350)
Q Consensus       132 ~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d--g~i~iwd~~~~~~~~~~~~----------~~~v~~~~~~  196 (350)
                      ..+..   +..... ....+..+.-.+....++++|+..  ..+++||+.+.+.+.+.+.          +--++++.|.
T Consensus       133 k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl  211 (412)
T KOG3881|consen  133 KSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL  211 (412)
T ss_pred             cCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence            74431   122222 223455565556677889989988  7899999998866655432          1235666776


Q ss_pred             cC--CcEEE-EEcCCcEEEEECCCc-ceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEe-ecCCCc
Q 018784          197 RD--GRYIT-TADGSSVKFWDANHF-GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGC-NKGHHG  271 (350)
Q Consensus       197 ~~--~~~l~-~~~~~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~-~~~h~~  271 (350)
                      +.  ...++ +..-+.+|+||.+.+ +++..+.+..+..+..-..+.++.+++|..-+.+..||++.+..+.. +.+-.+
T Consensus       212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG  291 (412)
T KOG3881|consen  212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG  291 (412)
T ss_pred             CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC
Confidence            65  44444 445689999999876 46667766655554443334688999999999999999999998876 889999


Q ss_pred             CEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784          272 PVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       272 ~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~  305 (350)
                      .|.++..+|..+++|++|.|..|||+|+.+...+
T Consensus       292 sirsih~hp~~~~las~GLDRyvRIhD~ktrkll  325 (412)
T KOG3881|consen  292 SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL  325 (412)
T ss_pred             CcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence            9999999999999999999999999999875544

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.57  E-value=7.4e-15  Score=128.43  Aligned_cols=199  Identities=19%  Similarity=0.221  Sum_probs=162.3

Q ss_pred             ccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeE
Q 018784          103 HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ  182 (350)
Q Consensus       103 ~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~  182 (350)
                      -..+.+.|+.+|.+|+.|+.-|.+..+|..+..+...  ......|.++.|.+..+.+++ + ..+.+.||| +.|..++
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E--i~v~Etv~Dv~~LHneq~~AV-A-QK~y~yvYD-~~GtElH  204 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE--INVMETVRDVTFLHNEQFFAV-A-QKKYVYVYD-NNGTELH  204 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeee--eehhhhhhhhhhhcchHHHHh-h-hhceEEEec-CCCcEEe
Confidence            3467899999999999999999999999876554333  234557889999987765444 3 456899999 5688899


Q ss_pred             eecCCCCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCe
Q 018784          183 TLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (350)
Q Consensus       183 ~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~  261 (350)
                      ++....++..+.|.|..-+|++++ .|.++.-|+.+++.+..+.............+.+.++-.|...|+|-+|.-...+
T Consensus       205 Clk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske  284 (545)
T KOG1272|consen  205 CLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE  284 (545)
T ss_pred             ehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence            999999999999999988887765 5789999999988876665444433333333456788899999999999999888


Q ss_pred             eEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCccc
Q 018784          262 QIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEE  306 (350)
Q Consensus       262 ~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~  306 (350)
                      ++..+..|.++|.++++.++|+|+||.+.|..++|||++...++.
T Consensus       285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~  329 (545)
T KOG1272|consen  285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH  329 (545)
T ss_pred             hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccc
Confidence            888888999999999999999999999999999999998766543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.56  E-value=3.1e-14  Score=124.57  Aligned_cols=264  Identities=21%  Similarity=0.266  Sum_probs=192.5

Q ss_pred             eeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeee
Q 018784           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS   98 (350)
Q Consensus        19 v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~   98 (350)
                      -+.+.|..   +|+.|+-|+.-|.+-..|-.++.+...+.- ...|+.+.|-.+.+++|.+ ....+.|+|- .|.+++.
T Consensus       132 PY~~~ytr---nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHC  205 (545)
T KOG1272|consen  132 PYHLDYTR---NGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHC  205 (545)
T ss_pred             CeeeeecC---CccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEee
Confidence            34566654   899999999999999988888887766643 2567778887777777754 7788899994 5677887


Q ss_pred             eeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC
Q 018784           99 FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG  178 (350)
Q Consensus        99 ~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~  178 (350)
                      +.....|..+.|-|..-+|++++..|.++.-|+..++..... -...+.+..+.-. +-+.++-.|...|+|.+|...+.
T Consensus       206 lk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~-~t~~G~~~vm~qN-P~NaVih~GhsnGtVSlWSP~sk  283 (545)
T KOG1272|consen  206 LKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASI-RTGAGRTDVMKQN-PYNAVIHLGHSNGTVSLWSPNSK  283 (545)
T ss_pred             hhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHH-HccCCccchhhcC-CccceEEEcCCCceEEecCCCCc
Confidence            777778999999999999999999999999999877654322 2234455555543 44556777888899999999988


Q ss_pred             ceeEeec-CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEE
Q 018784          179 KIVQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFD  256 (350)
Q Consensus       179 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d  256 (350)
                      +++..+. +.++|.++++.++|+|++++ -|..++|||+|.+..+.++..+......+++   .+-+++.+....+.+|.
T Consensus       284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~S---qkglLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  284 EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLS---QKGLLALSYGDHVQIWK  360 (545)
T ss_pred             chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccc---cccceeeecCCeeeeeh
Confidence            8766655 56899999999999998765 5899999999998877777664444444444   23455556677799995


Q ss_pred             -ccc--CeeEEeecCC--CcCEEEEEEcCCCCEEEEecCCCc
Q 018784          257 -FHT--GEQIGCNKGH--HGPVHCVRFSPGGESYASGSEDGT  293 (350)
Q Consensus       257 -~~~--~~~~~~~~~h--~~~v~~l~~sp~~~~lasgs~Dg~  293 (350)
                       ...  +.....+..|  .++|..+.|.|-...|-.|-.-|.
T Consensus       361 d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~  402 (545)
T KOG1272|consen  361 DALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI  402 (545)
T ss_pred             hhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence             322  1222223334  358999999997766655555443

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.56  E-value=5e-12  Score=106.58  Aligned_cols=252  Identities=13%  Similarity=0.115  Sum_probs=163.6

Q ss_pred             eCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCC-cEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCe
Q 018784           38 SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL  116 (350)
Q Consensus        38 s~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~-~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~  116 (350)
                      ..|+.|.+|++.-.++-..+..-++.+.+++|+||| ..|.+...|-.|-||.+.+.+....--.+..+..++|+|+|++
T Consensus        68 yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f  147 (447)
T KOG4497|consen   68 YKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQF  147 (447)
T ss_pred             eccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCce
Confidence            456777788877777777777778888999999999 5677888999999999988776554434556789999999988


Q ss_pred             EEEeeCC------------------------------------CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcE
Q 018784          117 LLTGGFE------------------------------------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (350)
Q Consensus       117 l~sg~~d------------------------------------~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  160 (350)
                      .+-.+.-                                    ..+.+||-.-....  ..=+..-.+..++|+| .+.+
T Consensus       148 ~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv--~aYe~~lG~k~v~wsP-~~qf  224 (447)
T KOG4497|consen  148 CAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV--YAYERGLGLKFVEWSP-CNQF  224 (447)
T ss_pred             eeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhee--eeeeeccceeEEEecc-ccce
Confidence            7765532                                    11223321100000  0001123466778875 4567


Q ss_pred             EEEEeCCCeEEEEECCCCceeEe-----------------------------e---------------------------
Q 018784          161 LSSCTDSGGVRLWDARSGKIVQT-----------------------------L---------------------------  184 (350)
Q Consensus       161 ~~s~~~dg~i~iwd~~~~~~~~~-----------------------------~---------------------------  184 (350)
                      ++.|+.|+.+|+-+--+-+....                             +                           
T Consensus       225 lavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~  304 (447)
T KOG4497|consen  225 LAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVK  304 (447)
T ss_pred             EEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhccee
Confidence            88899999988854222111000                             0                           


Q ss_pred             ----cC-------CCCeEEEEEecCCcEEEEEcCC---cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCC
Q 018784          185 ----ET-------KSPVTSAEVSRDGRYITTADGS---SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM  250 (350)
Q Consensus       185 ----~~-------~~~v~~~~~~~~~~~l~~~~~~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~  250 (350)
                          +.       ...+-.++|++|..++++.+|.   .+-+||++..+....+..........+.|...+ |+.+....
T Consensus       305 ~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~pr-L~vctg~s  383 (447)
T KOG4497|consen  305 VHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPR-LVVCTGKS  383 (447)
T ss_pred             eecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCce-EEEEcCCc
Confidence                00       0124567899999999998874   699999987665433333334455566665444 44444455


Q ss_pred             eEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcE
Q 018784          251 WVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTI  294 (350)
Q Consensus       251 ~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v  294 (350)
                      .+++|.......+... +..-.|..+.|.-.|.+++-.+.|.--
T Consensus       384 rLY~W~psg~~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDafc  426 (447)
T KOG4497|consen  384 RLYFWAPSGPRVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAFC  426 (447)
T ss_pred             eEEEEcCCCceEEecC-CCCceeeeEEecCCCcEEEEEcCCceE
Confidence            6889987654444332 233679999999999999999998643

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=1.7e-12  Score=120.98  Aligned_cols=233  Identities=18%  Similarity=0.130  Sum_probs=149.0

Q ss_pred             CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeC---CCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEE
Q 018784           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA---DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL  118 (350)
Q Consensus        42 ~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~---Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~  118 (350)
                      .+.+||... ...+.+..|...+...+|+|+++.++..+.   +..|.+||+.+++........+...+.+|+|+|+.|+
T Consensus       185 ~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~  263 (433)
T PRK04922        185 ALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA  263 (433)
T ss_pred             EEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence            588898754 444556667788999999999998887663   3469999998877654444455556789999998775


Q ss_pred             -EeeCCC--eEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe--EEEEECCCCceeEeecCCCCeEEE
Q 018784          119 -TGGFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG--VRLWDARSGKIVQTLETKSPVTSA  193 (350)
Q Consensus       119 -sg~~d~--~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~--i~iwd~~~~~~~~~~~~~~~v~~~  193 (350)
                       +.+.++  .|.+||+.++..  .....+.......+|++++..++++...++.  |.++|+.+++..............
T Consensus       264 ~~~s~~g~~~Iy~~d~~~g~~--~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~  341 (433)
T PRK04922        264 LTLSRDGNPEIYVMDLGSRQL--TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARA  341 (433)
T ss_pred             EEEeCCCCceEEEEECCCCCe--EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCE
Confidence             445554  588999876542  2233344445678898776666666545554  667777776543222222334468


Q ss_pred             EEecCCcEEEEEc--CC--cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCC---CeEEEEEcccCeeEEee
Q 018784          194 EVSRDGRYITTAD--GS--SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED---MWVHVFDFHTGEQIGCN  266 (350)
Q Consensus       194 ~~~~~~~~l~~~~--~~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d---~~i~v~d~~~~~~~~~~  266 (350)
                      .|+|+|++++...  ++  .|.+||+.+.... .+..........+.+ ++++++..+.+   ..|+++++. +.....+
T Consensus       342 ~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~sp-dG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l  418 (433)
T PRK04922        342 SVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAP-NGSMVLYATREGGRGVLAAVSTD-GRVRQRL  418 (433)
T ss_pred             EECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECC-CCCEEEEEEecCCceEEEEEECC-CCceEEc
Confidence            8999999876532  22  5999998776543 222211223345555 46665555542   357777774 4445555


Q ss_pred             cCCCcCEEEEEEcC
Q 018784          267 KGHHGPVHCVRFSP  280 (350)
Q Consensus       267 ~~h~~~v~~l~~sp  280 (350)
                      ..+.+.+...+|+|
T Consensus       419 ~~~~g~~~~p~wsp  432 (433)
T PRK04922        419 VSADGEVREPAWSP  432 (433)
T ss_pred             ccCCCCCCCCccCC
Confidence            55566677777876

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=6.3e-12  Score=117.22  Aligned_cols=232  Identities=14%  Similarity=0.078  Sum_probs=147.6

Q ss_pred             CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEee---CCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEE
Q 018784           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS---ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL  118 (350)
Q Consensus        42 ~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s---~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~  118 (350)
                      .|.++|.. +...+.+..|...+...+|+|||+.++..+   .+..|.+||+.++.......+.+.+...+|+|+|+.|+
T Consensus       183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la  261 (435)
T PRK05137        183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVV  261 (435)
T ss_pred             EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEE
Confidence            57778764 445556778888999999999999877655   35789999998887655445666778899999998775


Q ss_pred             -EeeCCCe--EEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC--eEEEEECCCCceeEeecCCCCeEEE
Q 018784          119 -TGGFEKI--LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSA  193 (350)
Q Consensus       119 -sg~~d~~--v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~~  193 (350)
                       +.+.++.  |.+||+.++..  ..+..+.+......|++++..++.+...++  .|.+||+..++..............
T Consensus       262 ~~~~~~g~~~Iy~~d~~~~~~--~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~  339 (435)
T PRK05137        262 MSLSQGGNTDIYTMDLRSGTT--TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTP  339 (435)
T ss_pred             EEEecCCCceEEEEECCCCce--EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCe
Confidence             5555555  66668765432  333344455667888887766666554443  6888898766543333334445667


Q ss_pred             EEecCCcEEEEEc--C--CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecC-C-----CeEEEEEcccCeeE
Q 018784          194 EVSRDGRYITTAD--G--SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE-D-----MWVHVFDFHTGEQI  263 (350)
Q Consensus       194 ~~~~~~~~l~~~~--~--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-d-----~~i~v~d~~~~~~~  263 (350)
                      .|+|+|+.++...  .  ..|.+||+..... +.+..........+.| +++.++..+. .     ..++++|+..+.. 
T Consensus       340 ~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~sp-DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-  416 (435)
T PRK05137        340 VWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAP-NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-  416 (435)
T ss_pred             EECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECC-CCCEEEEEEccCCCCCcceEEEEECCCCce-
Confidence            8999999876542  2  3588888754432 2222222334455666 4665554333 2     3577788765544 


Q ss_pred             EeecCCCcCEEEEEEcC
Q 018784          264 GCNKGHHGPVHCVRFSP  280 (350)
Q Consensus       264 ~~~~~h~~~v~~l~~sp  280 (350)
                      ..+. ..+.+...+|+|
T Consensus       417 ~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        417 REVP-TPGDASDPAWSP  432 (435)
T ss_pred             EEcc-CCCCccCcccCC
Confidence            2333 233355566665

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.55  E-value=7.2e-12  Score=105.12  Aligned_cols=234  Identities=15%  Similarity=0.219  Sum_probs=140.5

Q ss_pred             eeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEE-EeeCC------CeEEEeeCC
Q 018784           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSAD------FTAKLWDAL   91 (350)
Q Consensus        19 v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~-s~s~D------g~v~vWd~~   91 (350)
                      ...++|+.   |..-++.|..+| .|||+.+..+......-+.+.+.-+.+-....++| .||..      ..|.|||-.
T Consensus         8 ~lsvs~NQ---D~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~   83 (346)
T KOG2111|consen    8 TLSVSFNQ---DHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDL   83 (346)
T ss_pred             eeEEEEcc---CCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecc
Confidence            34477875   766777776655 59999876444333333333322222222233332 33333      579999977


Q ss_pred             CCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCC-CCCCCee--ecCCCCcEEEEEEeCCCCcE--EEEEeC
Q 018784           92 TGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR-PDAPPRE--VGNSSGSIRTVAWLHSDQTI--LSSCTD  166 (350)
Q Consensus        92 ~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~-~~~~~~~--~~~~~~~v~~~~~~~~~~~~--~~s~~~  166 (350)
                      ..+++..+.-...|.++.+.++.  |++. -.+.|.||...+ +......  ....++ ..++  .|.....  +.-|-.
T Consensus        84 k~~~i~el~f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkG-lC~~--~~~~~k~~LafPg~k  157 (346)
T KOG2111|consen   84 KERCIIELSFNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKG-LCSL--CPTSNKSLLAFPGFK  157 (346)
T ss_pred             cCcEEEEEEeccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCc-eEee--cCCCCceEEEcCCCc
Confidence            77888888899999999999875  3333 366899998752 2222111  111222 2222  2332222  223344


Q ss_pred             CCeEEEEECCCCce---eEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEE
Q 018784          167 SGGVRLWDARSGKI---VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIF  243 (350)
Q Consensus       167 dg~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (350)
                      -|.|+|-|+...+.   .....+.+.|.+++.+-+|                                         .++
T Consensus       158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G-----------------------------------------t~v  196 (346)
T KOG2111|consen  158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG-----------------------------------------TLV  196 (346)
T ss_pred             cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc-----------------------------------------cEE
Confidence            47788777765433   2222234555555555544                                         455


Q ss_pred             EEecCCCe-EEEEEcccCeeEEeec-C-CCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCC
Q 018784          244 IAGGEDMW-VHVFDFHTGEQIGCNK-G-HHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPN  303 (350)
Q Consensus       244 ~sg~~d~~-i~v~d~~~~~~~~~~~-~-h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~  303 (350)
                      |++|..|+ |||||..+|+++..+. | ....|++|+|||+..+||.+|..|+|.|+.+....
T Consensus       197 ATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  197 ATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             EEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence            55555554 6666666666665553 2 34569999999999999999999999999987644

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=1.4e-11  Score=114.41  Aligned_cols=211  Identities=16%  Similarity=0.097  Sum_probs=136.4

Q ss_pred             eEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEee---CCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcE
Q 018784           84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGG---FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (350)
Q Consensus        84 ~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~---~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  160 (350)
                      .|.+||...........+...+.+.+|+|||+.|+..+   .+..+.+|++.+++.  ..+....+....+.|+|++..+
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~~L  257 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGSKL  257 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCCEE
Confidence            68889987655555556677899999999999887654   345799999876532  2222233445568899877777


Q ss_pred             EEEEeCCC--eEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEE-Ec-CC--cEEEEECCCcceeeeeecCC-CCcee
Q 018784          161 LSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-AD-GS--SVKFWDANHFGLVKGYNMPC-NTESA  233 (350)
Q Consensus       161 ~~s~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~-~~--~i~vwd~~~~~~~~~~~~~~-~~~~~  233 (350)
                      +++...++  .|.+||+.+++..........+....|+|||+.|+. ++ ++  .|.++|+.+.... .+.... .....
T Consensus       258 a~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~  336 (429)
T PRK03629        258 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDA  336 (429)
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCE
Confidence            76655555  589999998876554444556778899999987754 33 23  3555566654332 222222 22334


Q ss_pred             EecCCCCcEEEEecC-C--CeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCc---EEEecCC
Q 018784          234 SLEPKLGNIFIAGGE-D--MWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGT---IRIWQTN  300 (350)
Q Consensus       234 ~~~~~~~~~l~sg~~-d--~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~---v~vw~~~  300 (350)
                      .+.| +++.++..+. +  ..|++||+.++... .+... .......|+|||++|+..+.++.   +++++++
T Consensus       337 ~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~  406 (429)
T PRK03629        337 DVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD  406 (429)
T ss_pred             EECC-CCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence            5555 4666655443 3  35888999877643 23221 12356789999999998887764   6677664

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.53  E-value=2.3e-11  Score=102.17  Aligned_cols=173  Identities=12%  Similarity=0.197  Sum_probs=133.0

Q ss_pred             CCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCC-Ceeeee---eccccEeEEEEcCCCCe
Q 018784           41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG-DEKHSF---EHKHIVRACAFSEDTHL  116 (350)
Q Consensus        41 ~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~-~~~~~~---~h~~~V~~~~~~~~~~~  116 (350)
                      .++.|||-...+++.+++ ...+|.+|.+..+-..++.   ...|.||..... +.++.+   ..++...++.-+.+..+
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~riVvvl---~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~  150 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDRIVVVL---ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL  150 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCCeEEEEe---cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence            468999988888888876 5688999999877665554   889999987633 344433   33445555544445555


Q ss_pred             EEEe-eCCCeEEEEECCCCCC-CCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe-EEEEECCCCceeEeecC---CCCe
Q 018784          117 LLTG-GFEKILRIFDLNRPDA-PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG-VRLWDARSGKIVQTLET---KSPV  190 (350)
Q Consensus       117 l~sg-~~d~~v~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~-i~iwd~~~~~~~~~~~~---~~~v  190 (350)
                      ||-- -.-|.|.|-|+..... ++..+..|...|.+++.. .++.++++++..|| |||||.++|..+.++..   +..+
T Consensus       151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln-~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i  229 (346)
T KOG2111|consen  151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALN-LQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI  229 (346)
T ss_pred             EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEc-CCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence            5553 4469999999976544 457778899999999865 67889999999998 89999999998888864   5679


Q ss_pred             EEEEEecCCcEEEEEcC-CcEEEEECCCc
Q 018784          191 TSAEVSRDGRYITTADG-SSVKFWDANHF  218 (350)
Q Consensus       191 ~~~~~~~~~~~l~~~~~-~~i~vwd~~~~  218 (350)
                      .+++|+|+..+|++++| |++.++.++..
T Consensus       230 y~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  230 YCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            99999999999988765 79999988653

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=2e-11  Score=113.92  Aligned_cols=214  Identities=14%  Similarity=0.101  Sum_probs=137.8

Q ss_pred             CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeC---CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCc
Q 018784           83 FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF---EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (350)
Q Consensus        83 g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~---d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (350)
                      ..|.+||...........+...+.+.+|+|+|+.|+..+.   +..|.+||+.++..  .......+.+....|+|++..
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCCE
Confidence            4788889865555555567788999999999998887653   46899999976543  233445566778889987777


Q ss_pred             EEEEEeCCCe--EEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEc--C--CcEEEEECCCcceeeeeecCCCCcee
Q 018784          160 ILSSCTDSGG--VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD--G--SSVKFWDANHFGLVKGYNMPCNTESA  233 (350)
Q Consensus       160 ~~~s~~~dg~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~--~~i~vwd~~~~~~~~~~~~~~~~~~~  233 (350)
                      ++++.+.++.  |.+||+.+++...............|+|||+.++...  +  ..|.++|+......+-..........
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~  339 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTP  339 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCe
Confidence            7777766655  7778998876544333334456689999998776443  2  25888887665433222112222334


Q ss_pred             EecCCCCcEEEEecCC---CeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCC------CcEEEecCCC
Q 018784          234 SLEPKLGNIFIAGGED---MWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSED------GTIRIWQTNP  301 (350)
Q Consensus       234 ~~~~~~~~~l~sg~~d---~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~D------g~v~vw~~~~  301 (350)
                      .+.| +++.++..+.+   ..|.+||+..+.. ..+. ....+....|+|||++|+..+.+      ..+++.++..
T Consensus       340 ~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g  413 (435)
T PRK05137        340 VWSP-RGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG  413 (435)
T ss_pred             EECC-CCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence            5655 46666554432   3688888765543 2232 22246788999999987654432      2466666643

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=8.8e-12  Score=112.10  Aligned_cols=275  Identities=17%  Similarity=0.186  Sum_probs=179.0

Q ss_pred             ccCCceeEEEecccCCCccEE-EEEeCCCCeeEeeCCCCceeeeccCccC--CeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784           14 GHSRPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEGHKG--AVWSCCLDANALFSASGSADFTAKLWDA   90 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~l-asgs~d~~v~iw~~~~~~~~~~l~gH~~--~V~~v~~~~~~~~l~s~s~Dg~v~vWd~   90 (350)
                      +|...-+.|..+|   ||.|+ |||..--.|++||+..-.+  .|+.|..  .|...-++.|-..++---.|.+|.+...
T Consensus        49 e~p~ast~ik~s~---DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak  123 (703)
T KOG2321|consen   49 EMPTASTRIKVSP---DGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK  123 (703)
T ss_pred             CCccccceeEecC---CCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence            5666677776665   99765 7777778899999865443  4566654  3444445555544444456777776542


Q ss_pred             CCCCeeeeeeccccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe
Q 018784           91 LTGDEKHSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (350)
Q Consensus        91 ~~~~~~~~~~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~  169 (350)
                      . | ....+.-+..-+.++++. +..++ .++....|.-++++.+.-... .....+.+.+|...+ ...+++.|+.||.
T Consensus       124 ~-G-~hy~~RIP~~GRDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P-~~~~~~~lN~v~in~-~hgLla~Gt~~g~  198 (703)
T KOG2321|consen  124 Y-G-RHYRTRIPKFGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNP-FETDSGELNVVSINE-EHGLLACGTEDGV  198 (703)
T ss_pred             c-C-eeeeeecCcCCccccccCCCccEE-EeecCcceEEEEccccccccc-cccccccceeeeecC-ccceEEecccCce
Confidence            2 1 111222334456666654 44444 444445566678876543322 223346677777654 4557788888999


Q ss_pred             EEEEECCCCceeEeecCCC------------CeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeee--eecCCCCceeE
Q 018784          170 VRLWDARSGKIVQTLETKS------------PVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKG--YNMPCNTESAS  234 (350)
Q Consensus       170 i~iwd~~~~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~--~~~~~~~~~~~  234 (350)
                      |.+||.|....+..+....            .++++.|+.+|..++++ +.|.+.|||+|...++..  +........+.
T Consensus       199 VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~  278 (703)
T KOG2321|consen  199 VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLD  278 (703)
T ss_pred             EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeec
Confidence            9999999887766665332            38999999999877665 579999999998776533  22223333444


Q ss_pred             ecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       235 ~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                      +.+.++.--++......++|||-.+|+....+..- ..+..+|+-|++.+++++-.+..+..|-+
T Consensus       279 ~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~yyi  342 (703)
T KOG2321|consen  279 WQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTYYI  342 (703)
T ss_pred             ccccCCCceEEecchHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeEEc
Confidence            44433333333344567999999999887666533 34999999999999999999988877754

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=1.5e-11  Score=114.51  Aligned_cols=212  Identities=15%  Similarity=0.143  Sum_probs=137.2

Q ss_pred             CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeC---CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCc
Q 018784           83 FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF---EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (350)
Q Consensus        83 g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~---d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (350)
                      ..|.+||...........+...+.+.+|+|+++.|+..+.   +..|.+||+..+..  .......+....+.|++++..
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCCE
Confidence            4699999865555555567778999999999999887764   34699999975542  222333444557789887777


Q ss_pred             EEEEEeCCC--eEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEc--CC--cEEEEECCCcceeeeeecCC-CCce
Q 018784          160 ILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD--GS--SVKFWDANHFGLVKGYNMPC-NTES  232 (350)
Q Consensus       160 ~~~s~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~--~i~vwd~~~~~~~~~~~~~~-~~~~  232 (350)
                      ++++.+.++  .|++||+.+++...............|+|||+.++...  ++  .|.++|+.+....+ +.... ....
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~  340 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNAR  340 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccC
Confidence            777766555  59999998887543322333345788999998776443  23  36777776654322 22222 2223


Q ss_pred             eEecCCCCcEEEEecC-CC--eEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCC---CcEEEecCC
Q 018784          233 ASLEPKLGNIFIAGGE-DM--WVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSED---GTIRIWQTN  300 (350)
Q Consensus       233 ~~~~~~~~~~l~sg~~-d~--~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~D---g~v~vw~~~  300 (350)
                      ..+++ ++++++..+. ++  .|.+||+.+++.. .+. +........|+|||++++..+.+   ..|+++++.
T Consensus       341 ~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~  411 (433)
T PRK04922        341 ASVSP-DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD  411 (433)
T ss_pred             EEECC-CCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            45665 4666665433 32  6999999887654 332 22245567999999987765553   356777664

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.48  E-value=1.2e-10  Score=105.29  Aligned_cols=243  Identities=16%  Similarity=0.150  Sum_probs=152.8

Q ss_pred             EEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEe-eCCCeEEEeeCCCCCeeeee
Q 018784           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASG-SADFTAKLWDALTGDEKHSF   99 (350)
Q Consensus        21 ~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~-s~Dg~v~vWd~~~~~~~~~~   99 (350)
                      .+.|+|   ||+++.+++.|+.+.++|+.+.+.+.++..-.+ -..+++++||++++.+ -.++.+.++|..+.+.+..+
T Consensus        41 ~~~~s~---Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I  116 (369)
T PF02239_consen   41 GLKFSP---DGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTI  116 (369)
T ss_dssp             EEE-TT----SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred             EEEecC---CCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccceeec
Confidence            455664   999999999999999999999999998875443 4679999999988765 46899999999998877765


Q ss_pred             ec--------cccEeEEEEcCCCCeEEEee-CCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784          100 EH--------KHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (350)
Q Consensus       100 ~h--------~~~V~~~~~~~~~~~l~sg~-~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i  170 (350)
                      .-        ...+.++..+|....++..- .-+.|.+-|......................|.++...++++...++.|
T Consensus       117 ~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i  196 (369)
T PF02239_consen  117 PTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKI  196 (369)
T ss_dssp             E--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred             ccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccccee
Confidence            31        23577888888887555544 4477877787655332222222344566777777666666766667788


Q ss_pred             EEEECCCCceeEeecC-------------------------------------------------------CCCeEEEEE
Q 018784          171 RLWDARSGKIVQTLET-------------------------------------------------------KSPVTSAEV  195 (350)
Q Consensus       171 ~iwd~~~~~~~~~~~~-------------------------------------------------------~~~v~~~~~  195 (350)
                      -++|.++++.+..+..                                                       ...-..+..
T Consensus       197 ~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~t  276 (369)
T PF02239_consen  197 AVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKT  276 (369)
T ss_dssp             EEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE-
T ss_pred             EEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeec
Confidence            8888887765443210                                                       001122345


Q ss_pred             ecCCcEEEEE----c-CCcEEEEECCCcceeeeeecCCC--CceeEecCCCCcEEEEecCCC-eEEEEEcccCeeEEeec
Q 018784          196 SRDGRYITTA----D-GSSVKFWDANHFGLVKGYNMPCN--TESASLEPKLGNIFIAGGEDM-WVHVFDFHTGEQIGCNK  267 (350)
Q Consensus       196 ~~~~~~l~~~----~-~~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~sg~~d~-~i~v~d~~~~~~~~~~~  267 (350)
                      +|+++++...    . .+.|.++|.++...++.+.....  ..-..+.+....+++|....+ .|.+||..+.+++..+.
T Consensus       277 hP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  277 HPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             -TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             CCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence            7888887665    2 36899999999877665543222  334456665445666666655 89999999999887765

...

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.48  E-value=1.4e-12  Score=116.30  Aligned_cols=174  Identities=17%  Similarity=0.181  Sum_probs=130.1

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCc-EEEEeeCCCeEEEeeCC
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWDAL   91 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~-~l~s~s~Dg~v~vWd~~   91 (350)
                      ..|.+.+.+-.++|   ||.-|+|++.||.|+||+ .+|-+..++.-...+|+|++|.|+.. .+.+.+..-.|+=  +.
T Consensus       101 ~AH~~A~~~gRW~~---dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKp--L~  174 (737)
T KOG1524|consen  101 SAHAAAISSGRWSP---DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKP--LA  174 (737)
T ss_pred             hhhhhhhhhcccCC---CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEee--cc
Confidence            47888888887665   999999999999999998 56766667777778999999998765 4555444344433  32


Q ss_pred             CCCeeee-eeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784           92 TGDEKHS-FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (350)
Q Consensus        92 ~~~~~~~-~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i  170 (350)
                      .+..... -.|.+-|.++.|++...++++||.|-..++||.-  .........|.-+|++++|.|+  ..++.++. +++
T Consensus       175 ~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd--~~~~v~S~-nt~  249 (737)
T KOG1524|consen  175 ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPE--KDYLLWSY-NTA  249 (737)
T ss_pred             cccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc--CcccccCChhccceeeeeeccc--cceeeeee-eee
Confidence            2222222 3699999999999999999999999999999964  3445556678889999999875  44555554 466


Q ss_pred             EEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcC
Q 018784          171 RLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG  207 (350)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  207 (350)
                      |+=.++.          +.|..++|++||..++++..
T Consensus       250 R~~~p~~----------GSifnlsWS~DGTQ~a~gt~  276 (737)
T KOG1524|consen  250 RFSSPRV----------GSIFNLSWSADGTQATCGTS  276 (737)
T ss_pred             eecCCCc----------cceEEEEEcCCCceeecccc
Confidence            6433332          45788999999999987653

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.48  E-value=1.4e-10  Score=99.31  Aligned_cols=267  Identities=12%  Similarity=0.141  Sum_probs=164.9

Q ss_pred             eeEEEecccCCCccEEEEEeCCCC--eeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCee
Q 018784           19 VVDLFYSPITPDGFFLVSASKDSS--PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK   96 (350)
Q Consensus        19 v~~~~~~~~s~dg~~lasgs~d~~--v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~   96 (350)
                      |-.+-|+.     .+||-.+.+..  +++.+.+++..+-.+. ...+|.+|.+..+  .|+..= ...|.|+|+.+.+.+
T Consensus        49 IvEmLFSS-----SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~--RLvV~L-ee~IyIydI~~MklL  119 (391)
T KOG2110|consen   49 IVEMLFSS-----SLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRK--RLVVCL-EESIYIYDIKDMKLL  119 (391)
T ss_pred             EEEeeccc-----ceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccc--eEEEEE-cccEEEEecccceee
Confidence            44555652     25665555444  7778776665544333 3467888888543  333332 344999999999888


Q ss_pred             eeee----ccccEeEEEEcCCCCeEEEe-e-CCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe-
Q 018784           97 HSFE----HKHIVRACAFSEDTHLLLTG-G-FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG-  169 (350)
Q Consensus        97 ~~~~----h~~~V~~~~~~~~~~~l~sg-~-~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~-  169 (350)
                      +++.    +...+.++.+++.+.+++-- + ..|.|.+||+.+-+. ...+..|++.+.+++|+ +++.+++++++.|+ 
T Consensus       120 hTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~-v~~I~aH~~~lAalafs-~~G~llATASeKGTV  197 (391)
T KOG2110|consen  120 HTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP-VNTINAHKGPLAALAFS-PDGTLLATASEKGTV  197 (391)
T ss_pred             hhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccccee-eeEEEecCCceeEEEEC-CCCCEEEEeccCceE
Confidence            8774    34446666666666677753 2 358899999976443 34456899999999987 47789999999998 


Q ss_pred             EEEEECCCCceeEeecCC---CCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEE
Q 018784          170 VRLWDARSGKIVQTLETK---SPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA  245 (350)
Q Consensus       170 i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  245 (350)
                      ||++.+.+|+.+.++...   ..|.+++|+|++.+|++++ .++|++|-+.+... .....+..  ...+.... ..-++
T Consensus       198 IRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~-~~~~~p~~--~~~~~~~~-sk~~~  273 (391)
T KOG2110|consen  198 IRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSN-NPPESPTA--GTSWFGKV-SKAAT  273 (391)
T ss_pred             EEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccccc-CCCCCCCC--CCcccchh-hhhhh
Confidence            899999999988888643   4688999999999997664 57899998765331 11110000  00000000 00011


Q ss_pred             ecCC-CeEEEEEcccCeeEEeecCCCc---CEEEEEEcCCCCEEEEecCCCcEEEecCCCC
Q 018784          246 GGED-MWVHVFDFHTGEQIGCNKGHHG---PVHCVRFSPGGESYASGSEDGTIRIWQTNPP  302 (350)
Q Consensus       246 g~~d-~~i~v~d~~~~~~~~~~~~h~~---~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~  302 (350)
                      +..- +.-.+||.  .+...+.+....   .+..+.-.+..+.+..++.||.++.+.++..
T Consensus       274 sylps~V~~~~~~--~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~  332 (391)
T KOG2110|consen  274 SYLPSQVSSVLDQ--SRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK  332 (391)
T ss_pred             hhcchhhhhhhhh--ccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence            1000 11112332  222223322222   2333333356788999999999999999765

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=1.5e-12  Score=116.99  Aligned_cols=190  Identities=21%  Similarity=0.307  Sum_probs=145.3

Q ss_pred             eEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee
Q 018784           20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF   99 (350)
Q Consensus        20 ~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~   99 (350)
                      .+++++..+.|  ++..|+. ..|.-.+++-|+++..|+--.+.+++|.+++-..+++.|+.||.|..||..+.....++
T Consensus       137 RDm~y~~~scD--ly~~gsg-~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l  213 (703)
T KOG2321|consen  137 RDMKYHKPSCD--LYLVGSG-SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTL  213 (703)
T ss_pred             ccccccCCCcc--EEEeecC-cceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheee
Confidence            35666664444  5554444 45666789999999999988899999999999999999999999999998765544443


Q ss_pred             e-------ccc-----cEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCC-CcEEEEEeC
Q 018784          100 E-------HKH-----IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD-QTILSSCTD  166 (350)
Q Consensus       100 ~-------h~~-----~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~  166 (350)
                      .       |++     .|+++.|+.+|-.+++|..+|.+.|||+.........-....-+|..+.|.+.+ +..++|+ +
T Consensus       214 ~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-D  292 (703)
T KOG2321|consen  214 DAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-D  292 (703)
T ss_pred             ecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-c
Confidence            2       322     499999999999999999999999999986554433333334567888887654 3455554 5


Q ss_pred             CCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEc-CCcEEEE
Q 018784          167 SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-GSSVKFW  213 (350)
Q Consensus       167 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~vw  213 (350)
                      ...++|||-.+|+....+.....++.+|+-|++-++.++. +..+..|
T Consensus       293 k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y  340 (703)
T KOG2321|consen  293 KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY  340 (703)
T ss_pred             hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence            5799999999999999999988999999999876666664 3444444

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.45  E-value=9.8e-12  Score=105.39  Aligned_cols=241  Identities=17%  Similarity=0.256  Sum_probs=161.4

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC-Cc----eeeeccCccC------------CeEEEEECCCC--cEE
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GD----WIGTFEGHKG------------AVWSCCLDANA--LFS   76 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~-~~----~~~~l~gH~~------------~V~~v~~~~~~--~~l   76 (350)
                      .+-|.+|-|..   +|.+||||..+|-|.++.-+. .+    ...++..|..            .|..+.|.+++  ..+
T Consensus        25 adiis~vef~~---~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F  101 (433)
T KOG1354|consen   25 ADIISAVEFDH---YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF  101 (433)
T ss_pred             hcceeeEEeec---ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence            45677888875   899999999999998876322 11    3344544543            46677886654  345


Q ss_pred             EEeeCCCeEEEeeCCCCCe-----------------------------------eeee--eccccEeEEEEcCCCCeEEE
Q 018784           77 ASGSADFTAKLWDALTGDE-----------------------------------KHSF--EHKHIVRACAFSEDTHLLLT  119 (350)
Q Consensus        77 ~s~s~Dg~v~vWd~~~~~~-----------------------------------~~~~--~h~~~V~~~~~~~~~~~l~s  119 (350)
                      .....|.+|++|.+.....                                   +..+  .|+--++++.++.|.+.+++
T Consensus       102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS  181 (433)
T KOG1354|consen  102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS  181 (433)
T ss_pred             EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence            5667999999997642211                                   0111  16667899999999998887


Q ss_pred             eeCCCeEEEEECCCCCCCCe--eecC-----CCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeE----eecC--
Q 018784          120 GGFEKILRIFDLNRPDAPPR--EVGN-----SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ----TLET--  186 (350)
Q Consensus       120 g~~d~~v~vwd~~~~~~~~~--~~~~-----~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~----~~~~--  186 (350)
                      + .|-.|.+|+++-......  ..++     ....|++..|.|....+++-.+.-|+|++.|+|.....-    .+..  
T Consensus       182 A-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe  260 (433)
T KOG1354|consen  182 A-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE  260 (433)
T ss_pred             c-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence            5 477899999864332211  1111     123466667777666666666677999999999543210    0110  


Q ss_pred             -----------CCCeEEEEEecCCcEEEEEcCCcEEEEEC-CCcceeeeeecCCCC----------------ceeEecCC
Q 018784          187 -----------KSPVTSAEVSRDGRYITTADGSSVKFWDA-NHFGLVKGYNMPCNT----------------ESASLEPK  238 (350)
Q Consensus       187 -----------~~~v~~~~~~~~~~~l~~~~~~~i~vwd~-~~~~~~~~~~~~~~~----------------~~~~~~~~  238 (350)
                                 -..|..+.|+++|+|+.+-+=-+|++||+ ...+++.++++++..                ..++++. 
T Consensus       261 dp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-  339 (433)
T KOG1354|consen  261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-  339 (433)
T ss_pred             CCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-
Confidence                       13578899999999999887789999999 445677777654321                1223332 


Q ss_pred             CCcEEEEecCCCeEEEEEcccCe
Q 018784          239 LGNIFIAGGEDMWVHVFDFHTGE  261 (350)
Q Consensus       239 ~~~~l~sg~~d~~i~v~d~~~~~  261 (350)
                      ++.++++|+..+.+++|++..|.
T Consensus       340 ~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  340 NDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             CcceEecccccceEEEecCCCCc
Confidence            35699999999999999976654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.45  E-value=2.9e-11  Score=104.10  Aligned_cols=259  Identities=15%  Similarity=0.162  Sum_probs=167.9

Q ss_pred             CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeec------cCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF------EGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (350)
Q Consensus        17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l------~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~   90 (350)
                      ..|..++|. ..+....+...+.|..+.+.+.+...+...+      .+-+++|..+..  ....|+++-.+|.+++|..
T Consensus        56 ~ris~l~~~-~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~--~dg~Litc~~sG~l~~~~~  132 (412)
T KOG3881|consen   56 DRISSLLFG-VDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL--ADGTLITCVSSGNLQVRHD  132 (412)
T ss_pred             hhhhhheee-cCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh--cCCEEEEEecCCcEEEEec
Confidence            455666665 2333445555556777776666555544433      334455544433  3446678889999999998


Q ss_pred             CCCC----eeeeeeccccEeEEEEcCCCC-eEEEeeCC--CeEEEEECCCCCCCCeeecC---------CCCcEEEEEEe
Q 018784           91 LTGD----EKHSFEHKHIVRACAFSEDTH-LLLTGGFE--KILRIFDLNRPDAPPREVGN---------SSGSIRTVAWL  154 (350)
Q Consensus        91 ~~~~----~~~~~~h~~~V~~~~~~~~~~-~l~sg~~d--~~v~vwd~~~~~~~~~~~~~---------~~~~v~~~~~~  154 (350)
                      ..+.    .+..+.--..+..+.-++... ++++||..  ..+++||+....+... ...         ..-+++.+.|.
T Consensus       133 k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~-aKNvpnD~L~LrVPvW~tdi~Fl  211 (412)
T KOG3881|consen  133 KSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWS-AKNVPNDRLGLRVPVWITDIRFL  211 (412)
T ss_pred             cCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeee-ccCCCCccccceeeeeeccceec
Confidence            7443    233333334566666666544 55668888  8899999976532211 111         12345667777


Q ss_pred             CC-CCcEEEEEeCCCeEEEEECCCC-ceeEeecC-CCCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceeee-eec-CC
Q 018784          155 HS-DQTILSSCTDSGGVRLWDARSG-KIVQTLET-KSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKG-YNM-PC  228 (350)
Q Consensus       155 ~~-~~~~~~s~~~dg~i~iwd~~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~~-~~~-~~  228 (350)
                      +. ....+++|+.-+.+++||++.+ +++.++.. ..++.++...|.++++.+++ -+.+..||+++.+.... +.. ..
T Consensus       212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG  291 (412)
T KOG3881|consen  212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG  291 (412)
T ss_pred             CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC
Confidence            54 2567889999999999999876 46666664 67899999999999988776 57899999998876544 221 12


Q ss_pred             CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCC
Q 018784          229 NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPG  281 (350)
Q Consensus       229 ~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~  281 (350)
                      ....+...+ ...++++++.|+.+||+|+.+..++... .-...++++-+.++
T Consensus       292 sirsih~hp-~~~~las~GLDRyvRIhD~ktrkll~kv-YvKs~lt~il~~~~  342 (412)
T KOG3881|consen  292 SIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKV-YVKSRLTFILLRDD  342 (412)
T ss_pred             CcceEEEcC-CCceEEeeccceeEEEeecccchhhhhh-hhhccccEEEecCC
Confidence            233444444 4689999999999999999986655322 12334566666554

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.44  E-value=4.5e-11  Score=102.07  Aligned_cols=237  Identities=14%  Similarity=0.213  Sum_probs=154.9

Q ss_pred             CeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeec--cccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCCCCe
Q 018784           63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH--KHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPR  139 (350)
Q Consensus        63 ~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h--~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~~  139 (350)
                      .++.++|++.-..+|.+..|-.||++|... .+...+.+  ...|.+++|-|.+ ..|+.|+. +.|.+|..........
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r  177 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANR  177 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccccc
Confidence            456788888777789999999999999765 45555544  4569999999965 45666665 4589998653221111


Q ss_pred             ------------eecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEee-cCCCCeEEEEEecCCcEEEEE-
Q 018784          140 ------------EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-ETKSPVTSAEVSRDGRYITTA-  205 (350)
Q Consensus       140 ------------~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-  205 (350)
                                  .....+..|+++.|.+++..++.+.-.|..|.|||+.++..+.-. .....+.-+.|+||+.++.++ 
T Consensus       178 ~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt  257 (445)
T KOG2139|consen  178 NIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT  257 (445)
T ss_pred             ccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec
Confidence                        111234679999998776666656667789999999998765544 456778889999999877554 


Q ss_pred             cCCcEEEEEC-CCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCe-------------eEEee-----
Q 018784          206 DGSSVKFWDA-NHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE-------------QIGCN-----  266 (350)
Q Consensus       206 ~~~~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~-------------~~~~~-----  266 (350)
                      -|+..++|.. ++....+-...+.......+.|....+|.+.+..-.++-.......             .+..+     
T Consensus       258 ~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti  337 (445)
T KOG2139|consen  258 CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTI  337 (445)
T ss_pred             ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhh
Confidence            5889999954 3333343333444555666777655566666655544433221111             01111     


Q ss_pred             -cC---CCcCEEEEEEcCCCCEEEEecCC--------CcEEEecCCC
Q 018784          267 -KG---HHGPVHCVRFSPGGESYASGSED--------GTIRIWQTNP  301 (350)
Q Consensus       267 -~~---h~~~v~~l~~sp~~~~lasgs~D--------g~v~vw~~~~  301 (350)
                       .+   -.+.+.+|+|.|.|.+||+-=..        ..|.+||...
T Consensus       338 ~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~  384 (445)
T KOG2139|consen  338 CAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK  384 (445)
T ss_pred             hcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence             11   13578899999999999874332        3466677643

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.43  E-value=2e-09  Score=95.59  Aligned_cols=255  Identities=14%  Similarity=0.150  Sum_probs=157.6

Q ss_pred             CCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeC----------CCeEEEeeCCCCCeeeeeecccc------
Q 018784           41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA----------DFTAKLWDALTGDEKHSFEHKHI------  104 (350)
Q Consensus        41 ~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~----------Dg~v~vWd~~~~~~~~~~~h~~~------  104 (350)
                      +++.+.|..+++.+.++..-..+- .+ +++|++.++.+..          +..|.+||..+.+....+.....      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            789999999999998886433332 23 8999987776655          89999999999998877764332      


Q ss_pred             --EeEEEEcCCCCeEEEee-C-CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECC-CCc
Q 018784          105 --VRACAFSEDTHLLLTGG-F-EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR-SGK  179 (350)
Q Consensus       105 --V~~~~~~~~~~~l~sg~-~-d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~-~~~  179 (350)
                        ....+++|+|++|+... . +..|.+.|+.+.+........  +...-+..  .+...++-|. ||......+. +|+
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp--~~~~vy~t--~e~~~~~~~~-Dg~~~~v~~d~~g~  179 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP--DCYHIFPT--ANDTFFMHCR-DGSLAKVGYGTKGN  179 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC--CCcEEEEe--cCCccEEEee-cCceEEEEecCCCc
Confidence              34889999999998765 3 789999999865433222111  11111111  1111222222 2333332221 121


Q ss_pred             e-eEe---ecC------CCCeEEEEEec-CCcEEEEEcCCcEEEEECCCcc-----eeeeeec--------CCCCceeEe
Q 018784          180 I-VQT---LET------KSPVTSAEVSR-DGRYITTADGSSVKFWDANHFG-----LVKGYNM--------PCNTESASL  235 (350)
Q Consensus       180 ~-~~~---~~~------~~~v~~~~~~~-~~~~l~~~~~~~i~vwd~~~~~-----~~~~~~~--------~~~~~~~~~  235 (350)
                      . ...   +..      ..+    .+.+ +|+++..+..|.|.+.|+....     ....+..        +.....+.+
T Consensus       180 ~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~  255 (352)
T TIGR02658       180 PKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY  255 (352)
T ss_pred             eEEeeeeeecCCccccccCC----ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE
Confidence            1 111   111      112    3344 7888877766999999964322     2222211        112223666


Q ss_pred             cCCCCcEEEEec---------CCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCC-EEEEec-CCCcEEEecCCCCCc
Q 018784          236 EPKLGNIFIAGG---------EDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGE-SYASGS-EDGTIRIWQTNPPNH  304 (350)
Q Consensus       236 ~~~~~~~l~sg~---------~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~-~lasgs-~Dg~v~vw~~~~~~~  304 (350)
                      .+..+++++...         ..+.|.++|..+++.+..+.. ...++.++++||++ +|+... .++.|.+.|....+.
T Consensus       256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~  334 (352)
T TIGR02658       256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE  334 (352)
T ss_pred             cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence            666556666331         225899999999998887653 33689999999998 776555 688899999877665


Q ss_pred             ccC
Q 018784          305 EEN  307 (350)
Q Consensus       305 ~~~  307 (350)
                      ...
T Consensus       335 i~~  337 (352)
T TIGR02658       335 LSS  337 (352)
T ss_pred             Eee
Confidence            543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=1.2e-09  Score=98.31  Aligned_cols=276  Identities=16%  Similarity=0.216  Sum_probs=176.3

Q ss_pred             CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEe-----eCC-----CeEE
Q 018784           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASG-----SAD-----FTAK   86 (350)
Q Consensus        17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~-----s~D-----g~v~   86 (350)
                      .+....+|++   +|+++|- +.+..++|++..+...+.+...-  .++.+.|+|.+.+|.|=     -.|     ..++
T Consensus        35 ~~~~v~~~S~---~G~lfA~-~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~  108 (566)
T KOG2315|consen   35 RPCNVFAYSN---NGRLFAY-SDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVL  108 (566)
T ss_pred             CcceeEEEcC---CCcEEEE-EcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCcee
Confidence            3444555554   8888876 45578899998887544444332  67888999999888642     222     4467


Q ss_pred             EeeCCCCCeeeeee-----------------------------------------ccccEeEEEEcCCC--CeEEE----
Q 018784           87 LWDALTGDEKHSFE-----------------------------------------HKHIVRACAFSEDT--HLLLT----  119 (350)
Q Consensus        87 vWd~~~~~~~~~~~-----------------------------------------h~~~V~~~~~~~~~--~~l~s----  119 (350)
                      +|+++++.....+.                                         |...+....++|.+  ..+|+    
T Consensus       109 v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe  188 (566)
T KOG2315|consen  109 VYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPE  188 (566)
T ss_pred             eeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccC
Confidence            99887743311110                                         33446666777652  34443    


Q ss_pred             -eeCCCeEEEEECCC--CCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe-----------CCCeEEEEECCCCceeEeec
Q 018784          120 -GGFEKILRIFDLNR--PDAPPREVGNSSGSIRTVAWLHSDQTILSSCT-----------DSGGVRLWDARSGKIVQTLE  185 (350)
Q Consensus       120 -g~~d~~v~vwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-----------~dg~i~iwd~~~~~~~~~~~  185 (350)
                       .|.=..|+||....  ...+.....-....-..+.|.+-+..+|+-.+           ...++++.++....+...+.
T Consensus       189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~  268 (566)
T KOG2315|consen  189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL  268 (566)
T ss_pred             CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence             34556788887651  11111111111223345667665554443221           23479999988667777888


Q ss_pred             CCCCeEEEEEecCCcEEEEEcC---CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecC---CCeEEEEEccc
Q 018784          186 TKSPVTSAEVSRDGRYITTADG---SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE---DMWVHVFDFHT  259 (350)
Q Consensus       186 ~~~~v~~~~~~~~~~~l~~~~~---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~---d~~i~v~d~~~  259 (350)
                      ..++|.++.|+++++-++..-+   ..+.|||++.. +  .+.++..+....+..+.+++++.++-   .|.|.+||..+
T Consensus       269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~--v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n  345 (566)
T KOG2315|consen  269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-P--VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN  345 (566)
T ss_pred             CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-E--eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence            8899999999999987655433   47889998643 2  23444455555555557888888775   46899999998


Q ss_pred             CeeEEeecCCCcCEEEEEEcCCCCEEEEecC------CCcEEEecCCCCC
Q 018784          260 GEQIGCNKGHHGPVHCVRFSPGGESYASGSE------DGTIRIWQTNPPN  303 (350)
Q Consensus       260 ~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~------Dg~v~vw~~~~~~  303 (350)
                      .+++..+..-..  +-..|+|||++++|+..      |.-++||++....
T Consensus       346 ~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~  393 (566)
T KOG2315|consen  346 RKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL  393 (566)
T ss_pred             hhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence            777766654333  45789999999987664      7889999986433

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.42  E-value=3e-11  Score=115.51  Aligned_cols=146  Identities=20%  Similarity=0.301  Sum_probs=121.3

Q ss_pred             CCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee--eeeccccE
Q 018784           28 TPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH--SFEHKHIV  105 (350)
Q Consensus        28 s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~--~~~h~~~V  105 (350)
                      +++.-++++|+.-+.+.+|+..--+.-..+.||.+.|..+.++.+|.+++|.|.|.++|+|++.+++...  -+.|+..|
T Consensus       142 s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRv  221 (967)
T KOG0974|consen  142 SAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARV  221 (967)
T ss_pred             cCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccccee
Confidence            3456689999999999999976333333689999999999999999999999999999999999887554  46899999


Q ss_pred             eEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCC
Q 018784          106 RACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS  177 (350)
Q Consensus       106 ~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~  177 (350)
                      ..+.|+|+  .++|++.|-+.++|+.+..+.. ...++....++.++. +.+..+++++++|+.+++||...
T Consensus       222 w~~~~~~n--~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~-~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  222 WACCFLPN--RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAV-PIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EEEEeccc--eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEE-cCCceEEEeeccCcchhhhhhhc
Confidence            99999999  8999999999999987643332 444555667888875 46778899999999999999754

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.39  E-value=5.1e-12  Score=103.43  Aligned_cols=158  Identities=15%  Similarity=0.209  Sum_probs=118.5

Q ss_pred             ccCCceeEEEecccCCCc-cEEEEEeCCCCeeEeeCCCC----------ceeeeccCccCCeEEEEECCCCcEEEEeeCC
Q 018784           14 GHSRPVVDLFYSPITPDG-FFLVSASKDSSPMLRNGETG----------DWIGTFEGHKGAVWSCCLDANALFSASGSAD   82 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg-~~lasgs~d~~v~iw~~~~~----------~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D   82 (350)
                      +-.+.+.+.... ..-.. .+|+.|=.+|.+.+||..++          +.......|+.+|.++.+.+....-++|+.+
T Consensus       148 ~Klgsvmc~~~~-~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~  226 (323)
T KOG0322|consen  148 SKLGSVMCQDKD-HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGAD  226 (323)
T ss_pred             cccCceeeeecc-ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcc
Confidence            445566655422 22222 35566778999999999887          3444556799999999998877777899999


Q ss_pred             CeEEEeeCCCC--Ceee----eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCC
Q 018784           83 FTAKLWDALTG--DEKH----SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS  156 (350)
Q Consensus        83 g~v~vWd~~~~--~~~~----~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  156 (350)
                      ..+.+|.+...  ....    .+.| ..|..+..-||++++||+|+|+.||||...+.... ..+.-|.+.|.+++|+++
T Consensus       227 dkl~~~Sl~~s~gslq~~~e~~lkn-pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pL-AVLkyHsagvn~vAfspd  304 (323)
T KOG0322|consen  227 DKLVMYSLNHSTGSLQIRKEITLKN-PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPL-AVLKYHSAGVNAVAFSPD  304 (323)
T ss_pred             ccceeeeeccccCcccccceEEecC-CCccceEEccCCcEEeecccCCcEEEEEeccCCch-hhhhhhhcceeEEEeCCC
Confidence            99999987533  2221    2223 35888999999999999999999999998765543 344667899999999864


Q ss_pred             CCcEEEEEeCCCeEEEEEC
Q 018784          157 DQTILSSCTDSGGVRLWDA  175 (350)
Q Consensus       157 ~~~~~~s~~~dg~i~iwd~  175 (350)
                       ..++++++.|+.|.+|++
T Consensus       305 -~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  305 -CELMAAASKDARISLWKL  322 (323)
T ss_pred             -CchhhhccCCceEEeeec
Confidence             567888999999999986

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.39  E-value=3e-10  Score=105.58  Aligned_cols=229  Identities=17%  Similarity=0.118  Sum_probs=137.7

Q ss_pred             CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCC---CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEE
Q 018784           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL  118 (350)
Q Consensus        42 ~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D---g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~  118 (350)
                      .+.++|... ...+.+..+...+....|+|++++++..+.+   ..|.+||+.+++......+...+.+++|+|+++.|+
T Consensus       171 ~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~  249 (417)
T TIGR02800       171 ELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA  249 (417)
T ss_pred             eEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence            466777643 3345566677778899999999988876544   479999998886655555666677899999998775


Q ss_pred             -EeeCCC--eEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC--eEEEEECCCCceeEeecCCCCeEEE
Q 018784          119 -TGGFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSA  193 (350)
Q Consensus       119 -sg~~d~--~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~~  193 (350)
                       +.+.++  .|.+||+.++..  .....+........|++++..++++...++  .|.++|+.+++..............
T Consensus       250 ~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~  327 (417)
T TIGR02800       250 VSLSKDGNPDIYVMDLDGKQL--TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASP  327 (417)
T ss_pred             EEECCCCCccEEEEECCCCCE--EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCe
Confidence             444444  588888875432  222233333446678876666665544443  5888888877654333334456678


Q ss_pred             EEecCCcEEEEEc-CC---cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCC---eEEEEEcccCeeEEee
Q 018784          194 EVSRDGRYITTAD-GS---SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM---WVHVFDFHTGEQIGCN  266 (350)
Q Consensus       194 ~~~~~~~~l~~~~-~~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~---~i~v~d~~~~~~~~~~  266 (350)
                      .|+|++++++... +.   .|.+||+.+... +.+..........+.+ +++.|+..+.++   .+++.+. ++.....+
T Consensus       328 ~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~sp-dg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~  404 (417)
T TIGR02800       328 SWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAP-NGRMILYATTRGGRGVLGLVST-DGRFRARL  404 (417)
T ss_pred             EECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECC-CCCEEEEEEeCCCcEEEEEEEC-CCceeeEC
Confidence            8999998876543 32   688899876432 2222122222334555 455555555443   3444443 34444334


Q ss_pred             cCCCcCEEEE
Q 018784          267 KGHHGPVHCV  276 (350)
Q Consensus       267 ~~h~~~v~~l  276 (350)
                      ..+.+.+...
T Consensus       405 ~~~~g~~~~~  414 (417)
T TIGR02800       405 PLGNGDVREP  414 (417)
T ss_pred             CCCCCCcCCC
Confidence            3333334333

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=4.5e-10  Score=104.87  Aligned_cols=233  Identities=14%  Similarity=0.101  Sum_probs=138.9

Q ss_pred             CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeC-CC--eEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEE
Q 018784           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA-DF--TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL  118 (350)
Q Consensus        42 ~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~-Dg--~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~  118 (350)
                      .+.++|...... +.+..+...+....|+|||+.++-.+. ++  .|.+||+.+++.......+......+|+|+|+.|+
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La  277 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLA  277 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEE
Confidence            455566544333 345556678888999999998775543 33  58888988776543322333445789999999776


Q ss_pred             E-eeCCCe--EEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC--eEEEEECCCCceeEeecCCCCeEEE
Q 018784          119 T-GGFEKI--LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSA  193 (350)
Q Consensus       119 s-g~~d~~--v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~~  193 (350)
                      . .+.++.  |.++|+.++..  .....+........|++++..++.+...++  .|.++|+.+++..............
T Consensus       278 ~~~~~~g~~~Iy~~dl~tg~~--~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~  355 (448)
T PRK04792        278 LVLSKDGQPEIYVVDIATKAL--TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGG  355 (448)
T ss_pred             EEEeCCCCeEEEEEECCCCCe--EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCe
Confidence            4 555665  66678765432  223333445567889887777776665444  4666788777643321122223456


Q ss_pred             EEecCCcEEEEEc--CC--cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEE-ecCCCe--EEEEEcccCeeEEee
Q 018784          194 EVSRDGRYITTAD--GS--SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA-GGEDMW--VHVFDFHTGEQIGCN  266 (350)
Q Consensus       194 ~~~~~~~~l~~~~--~~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-g~~d~~--i~v~d~~~~~~~~~~  266 (350)
                      .|+|||++++...  ++  .|.++|+.+..... +..........+.++ ++.++. ...++.  +++++. +|.....+
T Consensus       356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spd-G~~I~~~~~~~g~~~l~~~~~-~G~~~~~l  432 (448)
T PRK04792        356 SITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPN-GTMVIYSTTYQGKQVLAAVSI-DGRFKARL  432 (448)
T ss_pred             eECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCCCCCCceECCC-CCEEEEEEecCCceEEEEEEC-CCCceEEC
Confidence            8999998875432  33  45667877654322 221111223355654 555444 444443  667776 56655566


Q ss_pred             cCCCcCEEEEEEcC
Q 018784          267 KGHHGPVHCVRFSP  280 (350)
Q Consensus       267 ~~h~~~v~~l~~sp  280 (350)
                      ..+.+.+...+|+|
T Consensus       433 ~~~~g~~~~p~Wsp  446 (448)
T PRK04792        433 PAGQGEVKSPAWSP  446 (448)
T ss_pred             cCCCCCcCCCccCC
Confidence            66666677778876

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.38  E-value=1.8e-12  Score=115.54  Aligned_cols=93  Identities=20%  Similarity=0.368  Sum_probs=83.9

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE   95 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~   95 (350)
                      +++|...+|+|   ||++||+.|.||.+||++..+.+++..++.--+...||+|+|||+++++||.|-.|.||....++.
T Consensus       290 ~g~in~f~FS~---DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRV  366 (636)
T KOG2394|consen  290 EGSINEFAFSP---DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRV  366 (636)
T ss_pred             cccccceeEcC---CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceE
Confidence            45888888886   999999999999999999999999888888889999999999999999999999999999988776


Q ss_pred             eee-eeccccEeEEEEc
Q 018784           96 KHS-FEHKHIVRACAFS  111 (350)
Q Consensus        96 ~~~-~~h~~~V~~~~~~  111 (350)
                      +.. ..|+..|..++|.
T Consensus       367 VARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  367 VARGQGHKSWVSVVAFD  383 (636)
T ss_pred             EEeccccccceeeEeec
Confidence            554 3699999999997

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=2.7e-10  Score=105.87  Aligned_cols=203  Identities=20%  Similarity=0.255  Sum_probs=127.0

Q ss_pred             CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCC---CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCc
Q 018784           83 FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE---KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (350)
Q Consensus        83 g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d---~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (350)
                      ..|.+||...........+...+.+.+|+|+|+.|+..+.+   ..|.+||+.++..  .......+......|+|++..
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCCE
Confidence            46777776443334445677789999999999998876643   4599999976543  222333455668889987777


Q ss_pred             EEEEEeCCCeEEEEE--CCCCceeEeecC-CCCeEEEEEecCCcEEEE-Ec-CCcEEEEE--CCCcceeeeeecCC-CCc
Q 018784          160 ILSSCTDSGGVRLWD--ARSGKIVQTLET-KSPVTSAEVSRDGRYITT-AD-GSSVKFWD--ANHFGLVKGYNMPC-NTE  231 (350)
Q Consensus       160 ~~~s~~~dg~i~iwd--~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~-~~-~~~i~vwd--~~~~~~~~~~~~~~-~~~  231 (350)
                      ++++...++...+|.  +.++. ...+.. ........|+|||+.++. ++ ++...+|.  +.+... +...... ...
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~  331 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNT  331 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcC
Confidence            777777787766664  44444 334433 233456789999987654 33 34555554  444332 2222222 122


Q ss_pred             eeEecCCCCcEEEEecCCC---eEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCC
Q 018784          232 SASLEPKLGNIFIAGGEDM---WVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG  292 (350)
Q Consensus       232 ~~~~~~~~~~~l~sg~~d~---~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg  292 (350)
                      ...+.| ++++++..+.++   .|++||+.+++... +.. ........|+||+++|+..+.++
T Consensus       332 ~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        332 SPRISP-DGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             ceEECC-CCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecC
Confidence            345555 577777655443   69999998876543 322 22346789999999987766543

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.37  E-value=1.3e-10  Score=97.84  Aligned_cols=219  Identities=16%  Similarity=0.215  Sum_probs=155.9

Q ss_pred             ccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC---eeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECC-CC
Q 018784           60 HKGAVWSCCLDANALFSASGSADFTAKLWDALTGD---EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN-RP  134 (350)
Q Consensus        60 H~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~---~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~-~~  134 (350)
                      -..+|+|-+|++|...+|.+-....|-|+.....+   ..+++ .|...|+.++|+|..+.|++++.|+.-.+|... .+
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            34789999999999999999999999999876554   34444 488999999999999999999999999999883 33


Q ss_pred             CCCC-eeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEe-----ecCCCCeEEEEEecCCcEEEEE-cC
Q 018784          135 DAPP-REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQT-----LETKSPVTSAEVSRDGRYITTA-DG  207 (350)
Q Consensus       135 ~~~~-~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~-~~  207 (350)
                      ...+ -.+..+....+++.|+|..++ +++|+.-+.|.+|=.+...--..     ....+.|+++.|+|++-+++++ .|
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~enk-FAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D  167 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKENK-FAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD  167 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcCce-EEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence            2222 234567788999999976665 45566668899987765543321     1234678999999999887665 58


Q ss_pred             CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEE
Q 018784          208 SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYAS  287 (350)
Q Consensus       208 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~las  287 (350)
                      +.+|++...    ++...-.....     |- +.         +     +.-|++...+....++|..+.|+|+|..|+=
T Consensus       168 ~k~rVfSay----IK~Vdekpap~-----pW-gs---------k-----~PFG~lm~E~~~~ggwvh~v~fs~sG~~law  223 (361)
T KOG1523|consen  168 GKCRVFSAY----IKGVDEKPAPT-----PW-GS---------K-----MPFGQLMSEASSSGGWVHGVLFSPSGNRLAW  223 (361)
T ss_pred             cceeEEEEe----eeccccCCCCC-----CC-cc---------C-----CcHHHHHHhhccCCCceeeeEeCCCCCEeeE
Confidence            889988642    22221111000     00 00         0     0112223333345678999999999999999


Q ss_pred             ecCCCcEEEecCCCCC
Q 018784          288 GSEDGTIRIWQTNPPN  303 (350)
Q Consensus       288 gs~Dg~v~vw~~~~~~  303 (350)
                      .+.|..|.+=|...+.
T Consensus       224 v~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  224 VGHDSTVSFVDAAGPS  239 (361)
T ss_pred             ecCCCceEEeecCCCc
Confidence            9999999999987665

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.37  E-value=9.6e-09  Score=92.87  Aligned_cols=259  Identities=13%  Similarity=0.122  Sum_probs=161.0

Q ss_pred             CCeeEeeC--CCCceee--eccCccCCeEEEEECCCCcEEEEeeC----CCeEEEeeCCCC-Ceee---eee-ccccEeE
Q 018784           41 SSPMLRNG--ETGDWIG--TFEGHKGAVWSCCLDANALFSASGSA----DFTAKLWDALTG-DEKH---SFE-HKHIVRA  107 (350)
Q Consensus        41 ~~v~iw~~--~~~~~~~--~l~gH~~~V~~v~~~~~~~~l~s~s~----Dg~v~vWd~~~~-~~~~---~~~-h~~~V~~  107 (350)
                      +.|..++.  +++++..  .+..- ..-.-+++++++.+|.+...    ++.|..|.+... ..+.   ... .......
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~~~-~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~   91 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVAEG-ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH   91 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEEES-SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred             CcEEEEEEcCCCCCceEeeeecCC-CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence            56776665  4554422  22111 22234678899988877765    579999987654 2222   222 3345678


Q ss_pred             EEEcCCCCeEEEee-CCCeEEEEECCCCCCCCee---e----------cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEE
Q 018784          108 CAFSEDTHLLLTGG-FEKILRIFDLNRPDAPPRE---V----------GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW  173 (350)
Q Consensus       108 ~~~~~~~~~l~sg~-~d~~v~vwd~~~~~~~~~~---~----------~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iw  173 (350)
                      ++++|++++|+++. .++.|.++++.........   .          ........++.+.|+++.++++.-....|.+|
T Consensus        92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~  171 (345)
T PF10282_consen   92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY  171 (345)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred             EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence            99999999998886 4899999999763222111   1          01235577888887767677766556689999


Q ss_pred             ECCCCc--ee--E--eecCCCCeEEEEEecCCcEEEEEc--CCcEEEEECC--Ccc--eeeeeec-CC------CCceeE
Q 018784          174 DARSGK--IV--Q--TLETKSPVTSAEVSRDGRYITTAD--GSSVKFWDAN--HFG--LVKGYNM-PC------NTESAS  234 (350)
Q Consensus       174 d~~~~~--~~--~--~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~vwd~~--~~~--~~~~~~~-~~------~~~~~~  234 (350)
                      ++....  ..  .  .+........+.|+|+++++....  ++.|.+++..  ++.  .+..... +.      ....+.
T Consensus       172 ~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~  251 (345)
T PF10282_consen  172 DIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA  251 (345)
T ss_dssp             EE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE
T ss_pred             EEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE
Confidence            987654  31  2  234456788999999999876553  5789998877  332  2222221 11      123445


Q ss_pred             ecCCCCcEEEEecCCCeEEEEEcc--cCee--EEeecCCCcCEEEEEEcCCCCEEEEec-CCCcEEEecCC
Q 018784          235 LEPKLGNIFIAGGEDMWVHVFDFH--TGEQ--IGCNKGHHGPVHCVRFSPGGESYASGS-EDGTIRIWQTN  300 (350)
Q Consensus       235 ~~~~~~~~l~sg~~d~~i~v~d~~--~~~~--~~~~~~h~~~v~~l~~sp~~~~lasgs-~Dg~v~vw~~~  300 (350)
                      +.++...++++....+.|.+|++.  ++..  +............++++|+|++|+.+. .++.|.+|+++
T Consensus       252 ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  252 ISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             E-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            666544456666678899999993  3433  333333344589999999999987665 66799999874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.35  E-value=1.8e-10  Score=98.50  Aligned_cols=189  Identities=18%  Similarity=0.256  Sum_probs=132.3

Q ss_pred             ccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCC----C
Q 018784          103 HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS----G  178 (350)
Q Consensus       103 ~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~----~  178 (350)
                      -.++.++||+.-..++++..|.+|++|+-.. +.+..........|.+++|-|-....++.|-. +-|.+|....    +
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence            3578899999777788999999999999765 55555555566789999999887776665544 5799997532    1


Q ss_pred             cee----------EeecCCCCeEEEEEecCCcEEEEEc--CCcEEEEECCCcceeeeeecC-CCCceeEecCCCCcEEEE
Q 018784          179 KIV----------QTLETKSPVTSAEVSRDGRYITTAD--GSSVKFWDANHFGLVKGYNMP-CNTESASLEPKLGNIFIA  245 (350)
Q Consensus       179 ~~~----------~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~s  245 (350)
                      +.+          ..-..+.+|+++.|++||..+++++  +..|.+||..++..+.-.... .......++| ++.+|.+
T Consensus       177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfa  255 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFA  255 (445)
T ss_pred             cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEE
Confidence            211          1122457899999999999887764  678999999887654433222 2223445555 6899999


Q ss_pred             ecCCCeEEEEEccc-CeeEEeecCCCcCEEEEEEcCCCCEEE-EecCCCcEE
Q 018784          246 GGEDMWVHVFDFHT-GEQIGCNKGHHGPVHCVRFSPGGESYA-SGSEDGTIR  295 (350)
Q Consensus       246 g~~d~~i~v~d~~~-~~~~~~~~~h~~~v~~l~~sp~~~~la-sgs~Dg~v~  295 (350)
                      ++-|+..++|+... .....-.- -++.|...+|+|+|++|. +.+..-+|+
T Consensus       256 At~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~ly  306 (445)
T KOG2139|consen  256 ATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLY  306 (445)
T ss_pred             ecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEE
Confidence            99999999997543 23322222 334899999999998864 444443333

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=1.1e-09  Score=102.26  Aligned_cols=232  Identities=15%  Similarity=0.092  Sum_probs=141.7

Q ss_pred             eeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCC---CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEE-
Q 018784           43 PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL-  118 (350)
Q Consensus        43 v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D---g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-  118 (350)
                      +.++|...+. ...+..|...+....|+|+++.++..+.+   ..|.+||+.+++........+.+....|+|+|+.|+ 
T Consensus       181 l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~  259 (430)
T PRK00178        181 LQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF  259 (430)
T ss_pred             EEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence            6666765444 34555677788899999999987765533   468889998886554433444556789999999876 


Q ss_pred             EeeCCC--eEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC--eEEEEECCCCceeEeecCCCCeEEEE
Q 018784          119 TGGFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAE  194 (350)
Q Consensus       119 sg~~d~--~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~~~  194 (350)
                      +...++  .|.+||+.++..  ..+..+........|++++..++.+...++  .|.++|+.+++...............
T Consensus       260 ~~~~~g~~~Iy~~d~~~~~~--~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~  337 (430)
T PRK00178        260 VLSKDGNPEIYVMDLASRQL--SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPR  337 (430)
T ss_pred             EEccCCCceEEEEECCCCCe--EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceE
Confidence            444444  577788875432  222333444556788877777766654444  57778887776433222222234567


Q ss_pred             EecCCcEEEEEc--CC--cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecC-CC--eEEEEEcccCeeEEeec
Q 018784          195 VSRDGRYITTAD--GS--SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE-DM--WVHVFDFHTGEQIGCNK  267 (350)
Q Consensus       195 ~~~~~~~l~~~~--~~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-d~--~i~v~d~~~~~~~~~~~  267 (350)
                      |+|+|++++...  ++  .|.+||+.+..... +..........+.+ +++.++..+. ++  .|+++++. +.....+.
T Consensus       338 ~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~~p~~sp-dg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~  414 (430)
T PRK00178        338 LSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDTSLDESPSVAP-NGTMLIYATRQQGRGVLMLVSIN-GRVRLPLP  414 (430)
T ss_pred             ECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCCCCCCCceECC-CCCEEEEEEecCCceEEEEEECC-CCceEECc
Confidence            999998876542  22  58889987765322 22221223345665 4566555443 33  46666664 33333444


Q ss_pred             CCCcCEEEEEEcC
Q 018784          268 GHHGPVHCVRFSP  280 (350)
Q Consensus       268 ~h~~~v~~l~~sp  280 (350)
                      .+.+.+...+|+|
T Consensus       415 ~~~g~~~~p~ws~  427 (430)
T PRK00178        415 TAQGEVREPSWSP  427 (430)
T ss_pred             CCCCCcCCCccCC
Confidence            4555666677776

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.35  E-value=3.1e-11  Score=99.42  Aligned_cols=111  Identities=19%  Similarity=0.283  Sum_probs=89.8

Q ss_pred             cCCceeEEEecccCCCccEEE--EEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCC---CeEEEee
Q 018784           15 HSRPVVDLFYSPITPDGFFLV--SASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWD   89 (350)
Q Consensus        15 H~~~v~~~~~~~~s~dg~~la--sgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D---g~v~vWd   89 (350)
                      ..++|.+++|+|   +|..+|  .|..+..+.|||.+ ++.+.++.  ...+..+.|+|+|++++.++.+   |.+.+||
T Consensus        58 ~~~~I~~~~WsP---~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd  131 (194)
T PF08662_consen   58 KEGPIHDVAWSP---NGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD  131 (194)
T ss_pred             CCCceEEEEECc---CCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence            456799999987   776654  35567899999986 66766764  4677889999999999998754   6799999


Q ss_pred             CCCCCeeeeeeccccEeEEEEcCCCCeEEEeeC------CCeEEEEECC
Q 018784           90 ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF------EKILRIFDLN  132 (350)
Q Consensus        90 ~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~------d~~v~vwd~~  132 (350)
                      ..+.+.+....|.. +..++|+|+|++|+++..      |..++||+..
T Consensus       132 ~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  132 VRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             CCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence            99887777777765 679999999999998764      7889999875

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.34  E-value=6.1e-10  Score=103.55  Aligned_cols=205  Identities=18%  Similarity=0.209  Sum_probs=131.3

Q ss_pred             CCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCC---CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCC
Q 018784           82 DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE---KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ  158 (350)
Q Consensus        82 Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d---~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (350)
                      ...|.++|...........+...+...+|+|+|++|+.+..+   ..|.+||+.++..  .......+.+..+.|++++.
T Consensus       169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~  246 (417)
T TIGR02800       169 RYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS  246 (417)
T ss_pred             cceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence            346788887655555555666678899999999999876543   4799999976532  22233445566788988777


Q ss_pred             cEEEEEeCCC--eEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEE-Ec-CC--cEEEEECCCcceeeeeecC-CCCc
Q 018784          159 TILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-AD-GS--SVKFWDANHFGLVKGYNMP-CNTE  231 (350)
Q Consensus       159 ~~~~s~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~-~~--~i~vwd~~~~~~~~~~~~~-~~~~  231 (350)
                      .++++...++  .|.+||+.+++...............|+|+++.|+. ++ ++  .|.++|+.+....+ +... ....
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~~~~  325 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRGGYNA  325 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCcc
Confidence            7777665544  589999988765433333333446789999987654 33 22  57888887654322 2222 2223


Q ss_pred             eeEecCCCCcEEEEecCCC---eEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCC
Q 018784          232 SASLEPKLGNIFIAGGEDM---WVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG  292 (350)
Q Consensus       232 ~~~~~~~~~~~l~sg~~d~---~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg  292 (350)
                      ...+.+ ++++++..+.++   .|.+||+.++... .+... .......|+|++++|+..+.++
T Consensus       326 ~~~~sp-dg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       326 SPSWSP-DGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             CeEECC-CCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCC
Confidence            345555 467777766665   7888998876443 22221 2234568999999887766654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.34  E-value=7.6e-12  Score=112.18  Aligned_cols=240  Identities=19%  Similarity=0.287  Sum_probs=163.1

Q ss_pred             eeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC-------CCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCe
Q 018784           54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL-------TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKI  125 (350)
Q Consensus        54 ~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~-------~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~  125 (350)
                      +..+.||+..|++++--.+..-++++|.|++|++|.+.       +..++.++ .|+..|..+.|-.+-..+++  -|+.
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence            34678999999988765666777999999999999863       22345554 59999999999988877764  5788


Q ss_pred             EEEEECCCCCCCC-eeecCCCCcEEEEEEeCC-CC-cEEEEEeCCCeEEEEECCCCceeEeecC------CCCeEEEEEe
Q 018784          126 LRIFDLNRPDAPP-REVGNSSGSIRTVAWLHS-DQ-TILSSCTDSGGVRLWDARSGKIVQTLET------KSPVTSAEVS  196 (350)
Q Consensus       126 v~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~-~~-~~~~s~~~dg~i~iwd~~~~~~~~~~~~------~~~v~~~~~~  196 (350)
                      |.+||.--+.... .......+.+..+...+. +. .+++.|+...+|+++|.|+++-...++.      +.-+.++++.
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            9999975443322 111222333444444444 33 3455668889999999999876555542      2347788899


Q ss_pred             cCCcEEEEE-cCCcEEEEECCCcceeeeee-cCCCCceeEecCCCCcEEEEecCCCeEEE-EEcccCeeEEeecCCCcCE
Q 018784          197 RDGRYITTA-DGSSVKFWDANHFGLVKGYN-MPCNTESASLEPKLGNIFIAGGEDMWVHV-FDFHTGEQIGCNKGHHGPV  273 (350)
Q Consensus       197 ~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~d~~i~v-~d~~~~~~~~~~~~h~~~v  273 (350)
                      +.|+.++++ +.|.|-+.|.|+++.++... +.|.  ...+..+..+.++....|.++.+ |...+|......+....+.
T Consensus       886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecd--llqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepa  963 (1034)
T KOG4190|consen  886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECD--LLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPA  963 (1034)
T ss_pred             cCcchhhHHhcCCcEEEEecCCCceeccCCcccch--hhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcch
Confidence            999888765 67899999999998776542 2222  12222334567777788898888 9877777665554443333


Q ss_pred             EEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          274 HCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       274 ~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                      .-+  ..-|+.|++.-....+.+|.-
T Consensus       964 hfl--qsvgpSLV~a~~Gn~lgVYad  987 (1034)
T KOG4190|consen  964 HFL--QSVGPSLVTAQNGNILGVYAD  987 (1034)
T ss_pred             hhh--hccCceeEEeccCcEEEEEec
Confidence            222  234677888777778888853

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.34  E-value=2e-10  Score=94.59  Aligned_cols=152  Identities=20%  Similarity=0.305  Sum_probs=99.8

Q ss_pred             cCCCccEEEEEeC---CC-------CeeEeeC-CCCceeeeccC-ccCCeEEEEECCCCcEEE--EeeCCCeEEEeeCCC
Q 018784           27 ITPDGFFLVSASK---DS-------SPMLRNG-ETGDWIGTFEG-HKGAVWSCCLDANALFSA--SGSADFTAKLWDALT   92 (350)
Q Consensus        27 ~s~dg~~lasgs~---d~-------~v~iw~~-~~~~~~~~l~g-H~~~V~~v~~~~~~~~l~--s~s~Dg~v~vWd~~~   92 (350)
                      +++.|.+|+.-..   |.       ...||.+ ........++- ..++|..++|+|++..+|  +|..+..|.+||+. 
T Consensus        13 W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-   91 (194)
T PF08662_consen   13 WQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-   91 (194)
T ss_pred             ecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-
Confidence            4458866644332   22       2344444 22333444432 345799999999998754  35577899999996 


Q ss_pred             CCeeeeeeccccEeEEEEcCCCCeEEEeeCC---CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe----
Q 018784           93 GDEKHSFEHKHIVRACAFSEDTHLLLTGGFE---KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT----  165 (350)
Q Consensus        93 ~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d---~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~----  165 (350)
                      ++.+..+. ...+..+.|+|+|++|++++.+   |.+.+||+.+.+...   ......+..++|+|++..++++.+    
T Consensus        92 ~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~---~~~~~~~t~~~WsPdGr~~~ta~t~~r~  167 (194)
T PF08662_consen   92 GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS---TFEHSDATDVEWSPDGRYLATATTSPRL  167 (194)
T ss_pred             ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee---ccccCcEEEEEEcCCCCEEEEEEeccce
Confidence            55555553 4567899999999999998754   669999998543322   222345789999987666555444    


Q ss_pred             -CCCeEEEEECCCCceeEee
Q 018784          166 -DSGGVRLWDARSGKIVQTL  184 (350)
Q Consensus       166 -~dg~i~iwd~~~~~~~~~~  184 (350)
                       .|+.++||+.. |+.+...
T Consensus       168 ~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  168 RVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             eccccEEEEEec-CeEeEec
Confidence             37889999974 6655443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.33  E-value=1.1e-10  Score=104.44  Aligned_cols=197  Identities=20%  Similarity=0.218  Sum_probs=116.6

Q ss_pred             cCCCccEEEEEeCCCCeeEeeCCCCceeeec--cCc--cCCeEEEEECC-CCcEEEEeeCCCeEEEeeCCCCCeeeeeec
Q 018784           27 ITPDGFFLVSASKDSSPMLRNGETGDWIGTF--EGH--KGAVWSCCLDA-NALFSASGSADFTAKLWDALTGDEKHSFEH  101 (350)
Q Consensus        27 ~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l--~gH--~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h  101 (350)
                      -+|.|--|+.|=.-|.+.+.|....+..+-+  +++  +.+|+++.|-+ +..++..+=.+|.+.++|.+-.     ...
T Consensus       181 a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-----~~~  255 (636)
T KOG2394|consen  181 ATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-----CGA  255 (636)
T ss_pred             cCCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-----ccC
Confidence            3456666677777788888886554333222  233  36788999865 3344455567888888886211     000


Q ss_pred             cccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCcee
Q 018784          102 KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV  181 (350)
Q Consensus       102 ~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~  181 (350)
                      +.  .+-...+++..+...       .|.-.....+.....-..+.|...+|++ |+.++++-+.||.+||+|..+.+++
T Consensus       256 t~--p~~~~~k~~~~f~i~-------t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLl  325 (636)
T KOG2394|consen  256 TA--PSYQALKDGDQFAIL-------TSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELL  325 (636)
T ss_pred             CC--CcccccCCCCeeEEe-------eeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHH
Confidence            00  111122344444321       1111111112222222345788899987 8888999999999999999888776


Q ss_pred             EeecC-CCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccC
Q 018784          182 QTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG  260 (350)
Q Consensus       182 ~~~~~-~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~  260 (350)
                      ..++. -....+++|+|||+|++                                         +|++|.-|.||.+..+
T Consensus       326 g~mkSYFGGLLCvcWSPDGKyIv-----------------------------------------tGGEDDLVtVwSf~er  364 (636)
T KOG2394|consen  326 GVMKSYFGGLLCVCWSPDGKYIV-----------------------------------------TGGEDDLVTVWSFEER  364 (636)
T ss_pred             HHHHhhccceEEEEEcCCccEEE-----------------------------------------ecCCcceEEEEEeccc
Confidence            66654 35678888998876654                                         4455555555555555


Q ss_pred             eeEEeecCCCcCEEEEEEc
Q 018784          261 EQIGCNKGHHGPVHCVRFS  279 (350)
Q Consensus       261 ~~~~~~~~h~~~v~~l~~s  279 (350)
                      +.+..-++|..||..++|-
T Consensus       365 RVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  365 RVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             eEEEeccccccceeeEeec
Confidence            6666666666666666664

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.32  E-value=5e-09  Score=96.11  Aligned_cols=263  Identities=13%  Similarity=0.051  Sum_probs=162.4

Q ss_pred             ccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEE
Q 018784           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAF  110 (350)
Q Consensus        31 g~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~  110 (350)
                      +..+..++.++.+.-+|..+|+.+..+.-..........  ++..++.++.|+.+..+|..+++.+........+.+...
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~  142 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL  142 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence            456778888999999999999887655433221112222  355666778899999999999998876654443332111


Q ss_pred             cCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCC----cEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC
Q 018784          111 SEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG----SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET  186 (350)
Q Consensus       111 ~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~  186 (350)
                      . .+..++.+..++.+..||..+++...........    ...+....  ++ .++.+..++.+..+|+++|+.+.....
T Consensus       143 v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~  218 (377)
T TIGR03300       143 V-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRV  218 (377)
T ss_pred             E-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeecc
Confidence            1 2456777788999999999876544332111100    00011111  23 455667789999999999987765432


Q ss_pred             CCC-----------eEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEE
Q 018784          187 KSP-----------VTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVF  255 (350)
Q Consensus       187 ~~~-----------v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~  255 (350)
                      ..+           +...-...++.+++++.++.+..||..+++.+........ .....   .+..+..++.|+.++.+
T Consensus       219 ~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p~~---~~~~vyv~~~~G~l~~~  294 (377)
T TIGR03300       219 ALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSY-QGPAV---DDNRLYVTDADGVVVAL  294 (377)
T ss_pred             ccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCc-cCceE---eCCEEEEECCCCeEEEE
Confidence            110           0000111245666677788999999988877655542211 11111   25667777889999999


Q ss_pred             EcccCeeEEeecCCCc-CEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784          256 DFHTGEQIGCNKGHHG-PVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       256 d~~~~~~~~~~~~h~~-~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~  305 (350)
                      |..+|+.+-....... ...+...  .+..++.++.||.|+++|..+.+..
T Consensus       295 d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~  343 (377)
T TIGR03300       295 DRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFV  343 (377)
T ss_pred             ECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence            9999987643321111 1122222  3568888999999999998766554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.31  E-value=3.2e-11  Score=101.76  Aligned_cols=219  Identities=16%  Similarity=0.216  Sum_probs=143.1

Q ss_pred             EEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEE-eeCCCeEEEEECCCCCCCCeeecCC
Q 018784           66 SCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT-GGFEKILRIFDLNRPDAPPREVGNS  144 (350)
Q Consensus        66 ~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s-g~~d~~v~vwd~~~~~~~~~~~~~~  144 (350)
                      -++|+|+|+++|+.+.- .+.|=|.++-+....+.--..|.-+.|..+..++++ ...|+.|.+|++..++-..+. ...
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI-deg   90 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI-DEG   90 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe-ccC
Confidence            36899999999998765 666667666554333322334666778777765554 567889999999876554333 344


Q ss_pred             CCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCC----cEEEEECCCcce
Q 018784          145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGS----SVKFWDANHFGL  220 (350)
Q Consensus       145 ~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----~i~vwd~~~~~~  220 (350)
                      ...+.++.|+|+++.++.+..-|-.|.+|.+.+.+....-.....+..++|+|+|++.+..+..    .+.+........
T Consensus        91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l  170 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL  170 (447)
T ss_pred             CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence            5668899999988899999999999999999988776555555667889999999998765432    122222222222


Q ss_pred             eeeeecCCC-CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCC-cCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          221 VKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHH-GPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       221 ~~~~~~~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~-~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      .+.+..+.. ...+.+.| +|         ..+.+||---.  ...+-.|. -.+..++|+|.+++|+.|+.|+.+|+-+
T Consensus       171 l~~f~~dT~DltgieWsP-dg---------~~laVwd~~Le--ykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  171 LKEFKLDTIDLTGIEWSP-DG---------NWLAVWDNVLE--YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             HHhcCCCcccccCceECC-CC---------cEEEEecchhh--heeeeeeeccceeEEEeccccceEEeeccchhhhhhc
Confidence            233322211 12233444 23         34556663111  11112232 3478899999999999999999999865

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.30  E-value=5.5e-09  Score=95.82  Aligned_cols=256  Identities=16%  Similarity=0.136  Sum_probs=156.8

Q ss_pred             ccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEE-
Q 018784           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACA-  109 (350)
Q Consensus        31 g~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~-  109 (350)
                      +..++.++.|+.+..+|..+|+.+....-. +.+.+...-.++ .++.++.||.+..||..+++.+...........+. 
T Consensus       105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v~~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~  182 (377)
T TIGR03300       105 GGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLVANG-LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG  182 (377)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEEECC-EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence            556777888999999999999887655422 222211111233 44556789999999999998877664332211110 


Q ss_pred             -EcC--CCCeEEEeeCCCeEEEEECCCCCCCCeeecC-CCC--c------E-EEEEEeCCCCcEEEEEeCCCeEEEEECC
Q 018784          110 -FSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVGN-SSG--S------I-RTVAWLHSDQTILSSCTDSGGVRLWDAR  176 (350)
Q Consensus       110 -~~~--~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~-~~~--~------v-~~~~~~~~~~~~~~s~~~dg~i~iwd~~  176 (350)
                       -+|  .+..++.+..++.+..+|+.++......... ..+  .      + .+...  .++ .+..++.+|.+..||.+
T Consensus       183 ~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~-~vy~~~~~g~l~a~d~~  259 (377)
T TIGR03300       183 SASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGG-QVYAVSYQGRVAALDLR  259 (377)
T ss_pred             CCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECC-EEEEEEcCCEEEEEECC
Confidence             011  1246777888899999998766543221110 000  0      0 01111  133 34445678999999999


Q ss_pred             CCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeee-cCCCCceeEecCCCCcEEEEecCCCeEEEE
Q 018784          177 SGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYN-MPCNTESASLEPKLGNIFIAGGEDMWVHVF  255 (350)
Q Consensus       177 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~  255 (350)
                      +|+.+........ ....+ .++++++...++.+..+|..+++.+..+. ..........  ..+..+++++.++.|+++
T Consensus       260 tG~~~W~~~~~~~-~~p~~-~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~--i~g~~l~~~~~~G~l~~~  335 (377)
T TIGR03300       260 SGRVLWKRDASSY-QGPAV-DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPA--VVGGYLVVGDFEGYLHWL  335 (377)
T ss_pred             CCcEEEeeccCCc-cCceE-eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCE--EECCEEEEEeCCCEEEEE
Confidence            9988776653221 11222 24556666778899999998887665442 2111111111  135688889999999999


Q ss_pred             EcccCeeEEeecCCCcCEE-EEEEcCCCCEEEEecCCCcEEEe
Q 018784          256 DFHTGEQIGCNKGHHGPVH-CVRFSPGGESYASGSEDGTIRIW  297 (350)
Q Consensus       256 d~~~~~~~~~~~~h~~~v~-~l~~sp~~~~lasgs~Dg~v~vw  297 (350)
                      |..+|+.+..+..+...+. +..+. ++ .|+.++.||.|+.+
T Consensus       336 d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~  376 (377)
T TIGR03300       336 SREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAF  376 (377)
T ss_pred             ECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence            9999999887776654432 22333 33 47788999999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.29  E-value=1.9e-10  Score=110.13  Aligned_cols=183  Identities=13%  Similarity=0.191  Sum_probs=140.4

Q ss_pred             ccEEEEEeCCCCeeEeeCCCCceeeeccCccCCe----EEEEECCCCcEEEEeeCCCeEEEeeCCCC-CeeeeeeccccE
Q 018784           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAV----WSCCLDANALFSASGSADFTAKLWDALTG-DEKHSFEHKHIV  105 (350)
Q Consensus        31 g~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V----~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~-~~~~~~~h~~~V  105 (350)
                      .+.++.++.++.+.|||...+..+..+.+-.-..    ..+-++++..++++|+.-+.|.+|+.... .+.....|.+.+
T Consensus        99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~i  178 (967)
T KOG0974|consen   99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSI  178 (967)
T ss_pred             cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCce
Confidence            4577888999999999987776665554322211    12234778889999999999999998633 344456899999


Q ss_pred             eEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec
Q 018784          106 RACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE  185 (350)
Q Consensus       106 ~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~  185 (350)
                      ..+.++.+|.++++.|.|+++|+|++++.+......-.|.+.++.+.+.+.   .++++++|-++++|+.. ++.+..+.
T Consensus       179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~-~~~l~~y~  254 (967)
T KOG0974|consen  179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVN-GTQLEVYD  254 (967)
T ss_pred             EEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEEEEecc-cceehhhh
Confidence            999999999999999999999999999877665455678999999998865   78899999999999654 44444444


Q ss_pred             CC--CCeEEEEEecCCcEEE-EEcCCcEEEEECCC
Q 018784          186 TK--SPVTSAEVSRDGRYIT-TADGSSVKFWDANH  217 (350)
Q Consensus       186 ~~--~~v~~~~~~~~~~~l~-~~~~~~i~vwd~~~  217 (350)
                      .+  ..+..+...++.-+++ .+.|+.+++||...
T Consensus       255 ~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  255 EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             hhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            33  4577888887766654 45789999999754

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=3.8e-09  Score=98.60  Aligned_cols=210  Identities=14%  Similarity=0.132  Sum_probs=129.6

Q ss_pred             eEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCC---CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcE
Q 018784           84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE---KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (350)
Q Consensus        84 ~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d---~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  160 (350)
                      .|.++|...........+...+....|+|+|+.|+..+.+   ..|.+||+.++..  .......+......|+|++..+
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCEE
Confidence            4777787765555555677788999999999988766543   3688899876532  2222233445568898877777


Q ss_pred             EEEEeCCC--eEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEE-Ec-CC--cEEEEECCCcceeeeeecCC-CCcee
Q 018784          161 LSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-AD-GS--SVKFWDANHFGLVKGYNMPC-NTESA  233 (350)
Q Consensus       161 ~~s~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~-~~--~i~vwd~~~~~~~~~~~~~~-~~~~~  233 (350)
                      +++...++  .|.+||+.+++...............|+|||+.++. ++ ++  .|.++|+.+....+ +.... .....
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~  336 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARP  336 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccce
Confidence            76665555  588889988765432223334556789999987654 32 22  57778877655332 22221 12233


Q ss_pred             EecCCCCcEEEEecC-CC--eEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecC-CC--cEEEecC
Q 018784          234 SLEPKLGNIFIAGGE-DM--WVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSE-DG--TIRIWQT  299 (350)
Q Consensus       234 ~~~~~~~~~l~sg~~-d~--~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~-Dg--~v~vw~~  299 (350)
                      .+.+ +++.++..+. ++  .|.++|+.+++... +. +........|+|+|++++..+. ++  .|++++.
T Consensus       337 ~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~  405 (430)
T PRK00178        337 RLSA-DGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI  405 (430)
T ss_pred             EECC-CCCEEEEEEccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence            4555 4555554443 33  58889998876432 22 1122235689999998875554 33  3555555

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.27  E-value=8.8e-11  Score=117.84  Aligned_cols=194  Identities=12%  Similarity=0.186  Sum_probs=148.0

Q ss_pred             ccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee--ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCC
Q 018784           57 FEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP  134 (350)
Q Consensus        57 l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~--h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~  134 (350)
                      +..|-..|.++.-+|...+-+||+.||.|++|.-..++.+..+.  .+..|+.+.|+.+|+.+..+..||.+.+|.+.  
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-- 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-- 2281 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC--
Confidence            44566778888888988999999999999999988887766653  34779999999999999999999999999986  


Q ss_pred             CCCCeeecCCCCcEEEEEEeCCCCcEEEEE---eCCCeEEEEECCC--C-ceeEeecCCCCeEEEEEecCCcEEEEE-cC
Q 018784          135 DAPPREVGNSSGSIRTVAWLHSDQTILSSC---TDSGGVRLWDARS--G-KIVQTLETKSPVTSAEVSRDGRYITTA-DG  207 (350)
Q Consensus       135 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~---~~dg~i~iwd~~~--~-~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~  207 (350)
                      ..+....+.|......+.|..   .+++++   ++++.+.+||.--  . .++. .-+...++.+++.|+.+++.++ .+
T Consensus      2282 pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred             CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCc
Confidence            223333456666677777764   334443   3568899999632  2 2333 3456789999999998877654 68


Q ss_pred             CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEee
Q 018784          208 SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCN  266 (350)
Q Consensus       208 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~  266 (350)
                      |.|.+||++..+++..+..        +.  ...+|++|+..|.|+||++..-..+.++
T Consensus      2358 G~v~l~D~rqrql~h~~~~--------~~--~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA--------LD--TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred             CcEEEeehHHHHHHHHhhh--------hh--hhheeeccCcccceEEEEccccchhhcC
Confidence            9999999998877665543        11  3689999999999999999887666554

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.27  E-value=7.9e-08  Score=86.91  Aligned_cols=255  Identities=16%  Similarity=0.199  Sum_probs=155.7

Q ss_pred             eEEEecccCCCccEEEEEeC----CCCeeEeeCCC--Cce--eeeccCccCCeEEEEECCCCcEEEEee-CCCeEEEeeC
Q 018784           20 VDLFYSPITPDGFFLVSASK----DSSPMLRNGET--GDW--IGTFEGHKGAVWSCCLDANALFSASGS-ADFTAKLWDA   90 (350)
Q Consensus        20 ~~~~~~~~s~dg~~lasgs~----d~~v~iw~~~~--~~~--~~~l~gH~~~V~~v~~~~~~~~l~s~s-~Dg~v~vWd~   90 (350)
                      .-++++|   ++++|.+...    ++.|..|....  +++  +.....-...-..+++++++.+++++. .+|+|.++++
T Consensus        40 s~l~~~~---~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   40 SWLAVSP---DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             CCEEE-T---TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEe---CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            3455554   8888887776    45677776544  333  223321223334688999999888876 5899999998


Q ss_pred             CCC-Ceee---eeec-----------cccEeEEEEcCCCCeEEEee-CCCeEEEEECCCCCCCCe----eecCCCCcEEE
Q 018784           91 LTG-DEKH---SFEH-----------KHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPPR----EVGNSSGSIRT  150 (350)
Q Consensus        91 ~~~-~~~~---~~~h-----------~~~V~~~~~~~~~~~l~sg~-~d~~v~vwd~~~~~~~~~----~~~~~~~~v~~  150 (350)
                      ... ....   .+.|           .....++.|+|+++++++.. ....|.+|++........    .........+.
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh  196 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH  196 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred             cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence            763 2211   2221           23467899999999887753 345799999876542221    12234556788


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEECC--CCc--eeEeecC-------CCCeEEEEEecCCcEEEEEc--CCcEEEEECCC
Q 018784          151 VAWLHSDQTILSSCTDSGGVRLWDAR--SGK--IVQTLET-------KSPVTSAEVSRDGRYITTAD--GSSVKFWDANH  217 (350)
Q Consensus       151 ~~~~~~~~~~~~s~~~dg~i~iwd~~--~~~--~~~~~~~-------~~~v~~~~~~~~~~~l~~~~--~~~i~vwd~~~  217 (350)
                      ++|.+++..+++.+..+++|.++++.  +++  .+..+..       ......+.++|||++|.+++  .+.|.+|++..
T Consensus       197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~  276 (345)
T PF10282_consen  197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP  276 (345)
T ss_dssp             EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred             EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence            99988777788888888999999987  442  2222221       12577899999999987765  45799999832


Q ss_pred             --c--ceeeeeecCC-CCceeEecCCCCcEEE-EecCCCeEEEEEcc--cCeeEEeec-CCCcCEEEEEE
Q 018784          218 --F--GLVKGYNMPC-NTESASLEPKLGNIFI-AGGEDMWVHVFDFH--TGEQIGCNK-GHHGPVHCVRF  278 (350)
Q Consensus       218 --~--~~~~~~~~~~-~~~~~~~~~~~~~~l~-sg~~d~~i~v~d~~--~~~~~~~~~-~h~~~v~~l~~  278 (350)
                        +  ..+..+.... .+..+.+.+. +++|+ ++..++.|.+|+++  +|.+...-. .......||.|
T Consensus       277 ~~g~l~~~~~~~~~G~~Pr~~~~s~~-g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  277 ATGTLTLVQTVPTGGKFPRHFAFSPD-GRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             TTTTEEEEEEEEESSSSEEEEEE-TT-SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             CCCceEEEEEEeCCCCCccEEEEeCC-CCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence              2  2333333322 3455666664 55555 44567789999774  666543332 22334566655

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.25  E-value=9.2e-10  Score=99.71  Aligned_cols=187  Identities=18%  Similarity=0.269  Sum_probs=134.4

Q ss_pred             CCCcEEEEeeCCCeEEEeeCCCCCeeeeee---c-cccEeEEEE------cC--------------CCCeEEEeeCCCeE
Q 018784           71 ANALFSASGSADFTAKLWDALTGDEKHSFE---H-KHIVRACAF------SE--------------DTHLLLTGGFEKIL  126 (350)
Q Consensus        71 ~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~---h-~~~V~~~~~------~~--------------~~~~l~sg~~d~~v  126 (350)
                      +...++|....||.+|+||...++....+.   + .+...+..|      +|              +-..++-|-..|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            456789999999999999998877655442   1 222222222      22              23456667888999


Q ss_pred             EEEECCCCCCCCeee-cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEE
Q 018784          127 RIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITT  204 (350)
Q Consensus       127 ~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~  204 (350)
                      .+|++..++...+.. ..|.+.|.++.+. ++-.++.|++.|..+..|+...++.++..+.. ..+.+++++||++++.+
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~-~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~  161 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDA-QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT  161 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecc-cccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence            999998877666555 6788888888764 55678899999999999999988877776653 34667777777665544


Q ss_pred             EcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCC---
Q 018784          205 ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPG---  281 (350)
Q Consensus       205 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~---  281 (350)
                      +                                         +  +.|++||+.+.+.+.++.||.++|.+++|..+   
T Consensus       162 a-----------------------------------------s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g  198 (541)
T KOG4547|consen  162 A-----------------------------------------S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDG  198 (541)
T ss_pred             c-----------------------------------------c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccc
Confidence            3                                         2  34777777888888888999999999999876   


Q ss_pred             --CCEE-EEecCCCcEEEecCCC
Q 018784          282 --GESY-ASGSEDGTIRIWQTNP  301 (350)
Q Consensus       282 --~~~l-asgs~Dg~v~vw~~~~  301 (350)
                        |.++ .+...+..+.+|-+..
T Consensus       199 ~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  199 IIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             cccceeeeccccccceeEEEEEc
Confidence              5554 4555666788886643

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.25  E-value=1.6e-10  Score=100.03  Aligned_cols=158  Identities=16%  Similarity=0.190  Sum_probs=118.6

Q ss_pred             cCCCccEEEEEeCCCCeeEeeCC--C--CceeeeccC--ccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee
Q 018784           27 ITPDGFFLVSASKDSSPMLRNGE--T--GDWIGTFEG--HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE  100 (350)
Q Consensus        27 ~s~dg~~lasgs~d~~v~iw~~~--~--~~~~~~l~g--H~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~  100 (350)
                      .++++++||.+..+....+.+..  .  -+++..+..  -...+..+..+......-.++....+.+|....+.+...+.
T Consensus        70 ~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lG  149 (390)
T KOG3914|consen   70 TSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILG  149 (390)
T ss_pred             cCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhh
Confidence            34578999998888775554432  2  233333322  23345555555555666677888999999988788888899


Q ss_pred             ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCce
Q 018784          101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI  180 (350)
Q Consensus       101 h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~  180 (350)
                      |-..+..++++||+++++++..|..||+-.............+|..-|..++..  ++..++|++.|++|++||+++|++
T Consensus       150 hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~--~~~~LlS~sGD~tlr~Wd~~sgk~  227 (390)
T KOG3914|consen  150 HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT--DNYLLLSGSGDKTLRLWDITSGKL  227 (390)
T ss_pred             hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec--cCceeeecCCCCcEEEEecccCCc
Confidence            999999999999999999999999999988765555555667788888888865  344588999999999999999998


Q ss_pred             eEeecC
Q 018784          181 VQTLET  186 (350)
Q Consensus       181 ~~~~~~  186 (350)
                      +.++..
T Consensus       228 L~t~dl  233 (390)
T KOG3914|consen  228 LDTCDL  233 (390)
T ss_pred             ccccch
Confidence            876654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.25  E-value=6e-11  Score=106.55  Aligned_cols=276  Identities=19%  Similarity=0.227  Sum_probs=173.8

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC-------CceeeeccCccCCeEEEEECCCCcEEEEeeCCCe
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-------GDWIGTFEGHKGAVWSCCLDANALFSASGSADFT   84 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~-------~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~   84 (350)
                      +.||...|..++.-.   +..-++++|.|+++++|.+..       ..+..++..|+.+|..+.|-.+-++++++  ||.
T Consensus       731 f~GH~~~iRai~Aid---NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g  805 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAID---NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG  805 (1034)
T ss_pred             ccCcHHHhHHHHhcc---cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence            369999999886433   334578999999999999642       34677899999999999998888888765  999


Q ss_pred             EEEeeCCCCCeeeeee---ccccEeEEEEcC--CCCeEEEe-eCCCeEEEEECCCCCCCCeee----cCCCCcEEEEEEe
Q 018784           85 AKLWDALTGDEKHSFE---HKHIVRACAFSE--DTHLLLTG-GFEKILRIFDLNRPDAPPREV----GNSSGSIRTVAWL  154 (350)
Q Consensus        85 v~vWd~~~~~~~~~~~---h~~~V~~~~~~~--~~~~l~sg-~~d~~v~vwd~~~~~~~~~~~----~~~~~~v~~~~~~  154 (350)
                      |.+||...+..+....   ..+.+.-+..-+  +..++..| +...+|+++|....+......    ....+-+++++..
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            9999988776554331   112222232222  44555554 788999999987655443322    2234567778776


Q ss_pred             CCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEE-EEcCCcEEE-EECCCcceeeeeecCCCCc
Q 018784          155 HSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYIT-TADGSSVKF-WDANHFGLVKGYNMPCNTE  231 (350)
Q Consensus       155 ~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~-~~~~~~i~v-wd~~~~~~~~~~~~~~~~~  231 (350)
                      +.++. ++.+-..|.|.+.|.|+|+.+..+.. ......++ .|..+.++ +..+..+-+ |..-.+.....  ....+.
T Consensus       886 ~~GN~-lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q--~kpppe  961 (1034)
T KOG4190|consen  886 DKGNK-LAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQ--DKPPPE  961 (1034)
T ss_pred             cCcch-hhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeec--cCCCCc
Confidence            65554 45556679999999999998765543 11111111 23334443 344666776 76544332211  111122


Q ss_pred             eeEecCCCCcEEEEecCCCeEEEEEcc-cCe---eEEee--cCCCcCEEEEEEcCCCCEEEEecCCCcEEE
Q 018784          232 SASLEPKLGNIFIAGGEDMWVHVFDFH-TGE---QIGCN--KGHHGPVHCVRFSPGGESYASGSEDGTIRI  296 (350)
Q Consensus       232 ~~~~~~~~~~~l~sg~~d~~i~v~d~~-~~~---~~~~~--~~h~~~v~~l~~sp~~~~lasgs~Dg~v~v  296 (350)
                      ..-|-...|.-+++......+.+|--. ...   .+..+  ....+..++++--|-+.-+..|.+.|.|.+
T Consensus       962 pahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  962 PAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             chhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence            222222345667888888888888421 111   11112  234566788888888888888998888875

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.24  E-value=1.8e-09  Score=90.03  Aligned_cols=183  Identities=14%  Similarity=0.127  Sum_probs=129.0

Q ss_pred             CCceeEEEecccCCCcc-EEEEEeCCCCeeEeeCCCCceeeeccCccC---C---eEEEEECCCCcEEEEeeCCCeEEEe
Q 018784           16 SRPVVDLFYSPITPDGF-FLVSASKDSSPMLRNGETGDWIGTFEGHKG---A---VWSCCLDANALFSASGSADFTAKLW   88 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~-~lasgs~d~~v~iw~~~~~~~~~~l~gH~~---~---V~~v~~~~~~~~l~s~s~Dg~v~vW   88 (350)
                      +..+..+.++-...+|. .|+-+-.+|.+.++...-.+....|++-+.   .   ..++.|++.+.-++++-.+|.+-+-
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            34556666665556776 667788889999887554444444444221   1   2456678888889999999998854


Q ss_pred             eCCCCCeee--ee-eccccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCC-CCeeecCCCCcEEEEEEeCCCCcEEEE
Q 018784           89 DALTGDEKH--SF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDA-PPREVGNSSGSIRTVAWLHSDQTILSS  163 (350)
Q Consensus        89 d~~~~~~~~--~~-~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~s  163 (350)
                      +........  .+ .|.-....+.|+. +.+++++||.|+.+.-||++-+.. ......-|...|.++..+++.+..+++
T Consensus       149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T  228 (339)
T KOG0280|consen  149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT  228 (339)
T ss_pred             ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence            433322222  22 4777778888875 457889999999999999984332 222234566778899888999999999


Q ss_pred             EeCCCeEEEEECC-CCceeEeecCCCCeEEEEEecC
Q 018784          164 CTDSGGVRLWDAR-SGKIVQTLETKSPVTSAEVSRD  198 (350)
Q Consensus       164 ~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~~~~~~~  198 (350)
                      |+.|-.|++||.| .++++..-...+.|..+..+|.
T Consensus       229 GsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  229 GSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPE  264 (339)
T ss_pred             eccccceeeeehhcccCccccCccccceEEEEecch
Confidence            9999999999999 4677776666677877777774

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=7.7e-09  Score=96.64  Aligned_cols=210  Identities=13%  Similarity=0.102  Sum_probs=126.9

Q ss_pred             eEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCC---CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcE
Q 018784           84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE---KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (350)
Q Consensus        84 ~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d---~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  160 (350)
                      .+.++|...........+...+.+..|+|+|+.|+..+.+   ..|.+||+.+++.  .......+......|+|++..+
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCCEE
Confidence            5667787655555555677788899999999988766542   2588888875432  2222223334567898877777


Q ss_pred             EEEEeCCCe--EEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEc--CC--cEEEEECCCcceeeeeecCC-CCcee
Q 018784          161 LSSCTDSGG--VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD--GS--SVKFWDANHFGLVKGYNMPC-NTESA  233 (350)
Q Consensus       161 ~~s~~~dg~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~--~i~vwd~~~~~~~~~~~~~~-~~~~~  233 (350)
                      +++...++.  |.++|+.+++...............|+|||+.++...  ++  .|.++|+.+....+ +.... .....
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~  355 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGG  355 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCe
Confidence            777666664  8888988776543333334456788999998775432  23  57777877655332 22221 12234


Q ss_pred             EecCCCCcEEEEec-CCC--eEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEec-CCCc--EEEecC
Q 018784          234 SLEPKLGNIFIAGG-EDM--WVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-EDGT--IRIWQT  299 (350)
Q Consensus       234 ~~~~~~~~~l~sg~-~d~--~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs-~Dg~--v~vw~~  299 (350)
                      .+.++ +++++..+ .++  .|.++|+.+++... +... .......|+|+|++|+..+ .++.  +++++.
T Consensus       356 ~~SpD-G~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~  424 (448)
T PRK04792        356 SITPD-GRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI  424 (448)
T ss_pred             eECCC-CCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence            55554 55555443 344  45667877776432 2221 1223457999999876544 4444  555555

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.21  E-value=2.6e-08  Score=92.45  Aligned_cols=237  Identities=12%  Similarity=0.016  Sum_probs=135.9

Q ss_pred             CeeEeeCCCCceeeeccCccCCeEEEEECCCCcE---EEEeeCCCe--EEEeeCCCCCeeeeeeccccEeEEEEcCCCCe
Q 018784           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF---SASGSADFT--AKLWDALTGDEKHSFEHKHIVRACAFSEDTHL  116 (350)
Q Consensus        42 ~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~---l~s~s~Dg~--v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~  116 (350)
                      .+.+.|...+.. +.|......+..-+|+|||+.   +++.-.+|.  |.+.++.+++.......++.....+|+|||+.
T Consensus       166 ~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~  244 (428)
T PRK01029        166 ELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL  244 (428)
T ss_pred             eEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence            455555544433 345445555667789999863   334444544  55557777765554445555667899999988


Q ss_pred             EEEeeC-----CCeEEEEECCCC--CCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEE--ECCC-CceeEeecC
Q 018784          117 LLTGGF-----EKILRIFDLNRP--DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW--DARS-GKIVQTLET  186 (350)
Q Consensus       117 l~sg~~-----d~~v~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iw--d~~~-~~~~~~~~~  186 (350)
                      |+..+.     +-.+..|++..+  ...........+......|+|++..++.+...+|...+|  ++.. +.....+..
T Consensus       245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~  324 (428)
T PRK01029        245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK  324 (428)
T ss_pred             EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc
Confidence            875442     333455776542  122222222223445678988777777766566655555  4432 222333332


Q ss_pred             -CCCeEEEEEecCCcEEEEE-c-C--CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEE-EecC--CCeEEEEEcc
Q 018784          187 -KSPVTSAEVSRDGRYITTA-D-G--SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFI-AGGE--DMWVHVFDFH  258 (350)
Q Consensus       187 -~~~v~~~~~~~~~~~l~~~-~-~--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-sg~~--d~~i~v~d~~  258 (350)
                       ...+....|+|||+.|+.. . +  ..|.+||+.++....-...........+.+ +++.|+ +...  ...|+++|+.
T Consensus       325 ~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSp-DG~~L~f~~~~~g~~~L~~vdl~  403 (428)
T PRK01029        325 KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAI-DSLHLVYSAGNSNESELYLISLI  403 (428)
T ss_pred             CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECC-CCCEEEEEECCCCCceEEEEECC
Confidence             3455678899999977643 2 2  369999998776543222222234455655 455554 4333  3468888987


Q ss_pred             cCeeEEeecCCCcCEEEEEEcCC
Q 018784          259 TGEQIGCNKGHHGPVHCVRFSPG  281 (350)
Q Consensus       259 ~~~~~~~~~~h~~~v~~l~~sp~  281 (350)
                      +++..... ...+.+...+|+|-
T Consensus       404 ~g~~~~Lt-~~~g~~~~p~Ws~~  425 (428)
T PRK01029        404 TKKTRKIV-IGSGEKRFPSWGAF  425 (428)
T ss_pred             CCCEEEee-cCCCcccCceecCC
Confidence            76654332 23344566777764

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.19  E-value=4.4e-08  Score=99.99  Aligned_cols=236  Identities=13%  Similarity=0.088  Sum_probs=154.0

Q ss_pred             EEEECC-CCcEEEEeeCCCeEEEeeCCCCCeeeeeec---------------cccEeEEEEcCCCCeEEEee-CCCeEEE
Q 018784           66 SCCLDA-NALFSASGSADFTAKLWDALTGDEKHSFEH---------------KHIVRACAFSEDTHLLLTGG-FEKILRI  128 (350)
Q Consensus        66 ~v~~~~-~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h---------------~~~V~~~~~~~~~~~l~sg~-~d~~v~v  128 (350)
                      .+++++ ++.++++-...+.|++||.. +.....+..               -.....+++.++++.|+.+. .++.|++
T Consensus       572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~  650 (1057)
T PLN02919        572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE  650 (1057)
T ss_pred             eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence            467775 46777888888999999975 333332221               12357899999887665554 4678999


Q ss_pred             EECCCCCCCCeeec----------------CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec-------
Q 018784          129 FDLNRPDAPPREVG----------------NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-------  185 (350)
Q Consensus       129 wd~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~-------  185 (350)
                      +|+.+.... ...+                ..-.....+++.+.++.++++...++.|++||..++.......       
T Consensus       651 id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~  729 (1057)
T PLN02919        651 IDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL  729 (1057)
T ss_pred             EecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC
Confidence            997643211 0000                0012345788887678888888888999999998775432110       


Q ss_pred             -C-------CCCeEEEEEecCCcEEE-EE-cCCcEEEEECCCcceeeee-----------ec-----------CCCCcee
Q 018784          186 -T-------KSPVTSAEVSRDGRYIT-TA-DGSSVKFWDANHFGLVKGY-----------NM-----------PCNTESA  233 (350)
Q Consensus       186 -~-------~~~v~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~~~~~~~-----------~~-----------~~~~~~~  233 (350)
                       .       -.....++++|++..|. +. .++.|++||+.+.......           ..           -..+..+
T Consensus       730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv  809 (1057)
T PLN02919        730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV  809 (1057)
T ss_pred             CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence             0       01345688999987443 33 4578999998765421100           00           0012333


Q ss_pred             EecCCCCcEEEEecCCCeEEEEEcccCeeEEeec-------------CCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          234 SLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK-------------GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       234 ~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~-------------~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      .+.+ +++++++-+.+++|++||..++.......             +.-.....|+++++|+++++-+.+++|++||+.
T Consensus       810 avd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~  888 (1057)
T PLN02919        810 LCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN  888 (1057)
T ss_pred             eEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence            4443 47899999999999999998776543221             112356789999999999999999999999997


Q ss_pred             CCCc
Q 018784          301 PPNH  304 (350)
Q Consensus       301 ~~~~  304 (350)
                      ....
T Consensus       889 ~~~~  892 (1057)
T PLN02919        889 KGEA  892 (1057)
T ss_pred             CCcc
Confidence            6654

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.16  E-value=2.6e-10  Score=114.62  Aligned_cols=196  Identities=19%  Similarity=0.280  Sum_probs=141.3

Q ss_pred             CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeecc-CccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe
Q 018784           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE   95 (350)
Q Consensus        17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~   95 (350)
                      ..|.++.-+|.-|   +-+||+.||.+++|.-..++.+..++ +-...|..+.|+.+|..+..+..||.+-+|.+. .++
T Consensus      2209 ~~v~r~~sHp~~~---~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~ 2284 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDP---YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKP 2284 (2439)
T ss_pred             CceeeecCCCCCc---eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccc
Confidence            3455555455333   77999999999999876666665553 223778889999999999999999999999987 223


Q ss_pred             eee-eeccccEeEEEEcCCCCeEEEee---CCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEE
Q 018784           96 KHS-FEHKHIVRACAFSEDTHLLLTGG---FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (350)
Q Consensus        96 ~~~-~~h~~~V~~~~~~~~~~~l~sg~---~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~  171 (350)
                      ... ..|+.......|-.  ..+++++   .++.+.+||...+....-....|.+.++++++.| ...++++|+.+|.|+
T Consensus      2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P-~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP-KHQLLISGGRKGEVC 2361 (2439)
T ss_pred             eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC-cceEEEecCCcCcEE
Confidence            333 24776666666654  4566654   4788999997544333323367888899999886 456788999999999


Q ss_pred             EEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecC
Q 018784          172 LWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP  227 (350)
Q Consensus       172 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~  227 (350)
                      +||++..+..+.++.        +.....++..+..|.++||++.....++.+...
T Consensus      2362 l~D~rqrql~h~~~~--------~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQA--------LDTREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred             EeehHHHHHHHHhhh--------hhhhheeeccCcccceEEEEccccchhhcCchh
Confidence            999998887766654        333334455556899999999988887766543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.15  E-value=2.8e-09  Score=90.68  Aligned_cols=249  Identities=16%  Similarity=0.219  Sum_probs=160.8

Q ss_pred             CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC-CCCCeeeeeec--cccEeEEEEcCCCCeEEEeeCCCeEE
Q 018784           51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA-LTGDEKHSFEH--KHIVRACAFSEDTHLLLTGGFEKILR  127 (350)
Q Consensus        51 ~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~-~~~~~~~~~~h--~~~V~~~~~~~~~~~l~sg~~d~~v~  127 (350)
                      ..++..++||.+.|+....-|...-+.+.+.|.++|||-- ..++.-..+.|  +..++++.+++....|+.|-..|++.
T Consensus        14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt   93 (404)
T KOG1409|consen   14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT   93 (404)
T ss_pred             hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence            3456778999999998887777777889999999999953 33433333333  56789999999999999999999999


Q ss_pred             EEECCCC---CCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEE
Q 018784          128 IFDLNRP---DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT  204 (350)
Q Consensus       128 vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  204 (350)
                      -+.+...   ....+....|.+.+..+.|..+. ..+++++.|..+.---.+++..+.........+.+.+.-.  +...
T Consensus        94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fv  170 (404)
T KOG1409|consen   94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFV  170 (404)
T ss_pred             EEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEe
Confidence            8876432   12233445677888888877544 4566777775544333344433322211111111111111  1111


Q ss_pred             Ec-CCcEEEE--ECCCcceeeeeecCCCCc-eeEecCCCCcEEEEecCCCeEEEEEcccCe-eEEeecCCCcCEEEEEEc
Q 018784          205 AD-GSSVKFW--DANHFGLVKGYNMPCNTE-SASLEPKLGNIFIAGGEDMWVHVFDFHTGE-QIGCNKGHHGPVHCVRFS  279 (350)
Q Consensus       205 ~~-~~~i~vw--d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~-~~~~~~~h~~~v~~l~~s  279 (350)
                      ++ .+.|..-  +.....++.++..+.... +..+.+ ...+|.+|..|..+.+||+.-.+ ....+.+|...|..+..-
T Consensus       171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~  249 (404)
T KOG1409|consen  171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA  249 (404)
T ss_pred             cccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence            21 2222221  122233444444333332 333444 46889999999999999997554 345678999999999998


Q ss_pred             CCCCEEEEecCCCcEEEecCCCCC
Q 018784          280 PGGESYASGSEDGTIRIWQTNPPN  303 (350)
Q Consensus       280 p~~~~lasgs~Dg~v~vw~~~~~~  303 (350)
                      +--+.+.|++.||.|.+|+.+...
T Consensus       250 ~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  250 QHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             hhheeeeeccCCCeEEEEecccee
Confidence            888899999999999999986443

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.15  E-value=7.2e-10  Score=102.78  Aligned_cols=278  Identities=17%  Similarity=0.242  Sum_probs=169.1

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCCCeeEeeCC-CCceeeeccCccC--CeEEEEECCC---CcEEEEeeCCCeEEEee
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE-TGDWIGTFEGHKG--AVWSCCLDAN---ALFSASGSADFTAKLWD   89 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~-~~~~~~~l~gH~~--~V~~v~~~~~---~~~l~s~s~Dg~v~vWd   89 (350)
                      .+++.++..+|   .|+-+|.++.-|-..| |+. .+.+.+.|. |..  .|--+.|++.   ...+++.+...+ .+|+
T Consensus        24 ~~~~~a~si~p---~grdi~lAsr~gl~i~-dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qka-iiwn   97 (1081)
T KOG0309|consen   24 DGGFNAVSINP---SGRDIVLASRQGLYII-DLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKA-IIWN   97 (1081)
T ss_pred             cCcccceeecc---ccchhhhhhhcCeEEE-eccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchh-hhhh
Confidence            34566665554   7888888988776443 443 333333332 222  2334456543   334555544444 5798


Q ss_pred             CCCCC--ee--eeeeccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEE
Q 018784           90 ALTGD--EK--HSFEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (350)
Q Consensus        90 ~~~~~--~~--~~~~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~  164 (350)
                      +....  .+  ....|...|..+.|+|+. ..+++++.|..+..||+.++..+......-......++|...++.++++.
T Consensus        98 lA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass  177 (1081)
T KOG0309|consen   98 LAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS  177 (1081)
T ss_pred             hhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc
Confidence            75332  22  233688899999999865 57889999999999999887655444333344556788887788777764


Q ss_pred             eCCCeEEEEECCCC-ceeEeecCC-CCeEEEEEec--CCcEEEEEcCCcEEEEECCCcceeeeeecCCCC--c-------
Q 018784          165 TDSGGVRLWDARSG-KIVQTLETK-SPVTSAEVSR--DGRYITTADGSSVKFWDANHFGLVKGYNMPCNT--E-------  231 (350)
Q Consensus       165 ~~dg~i~iwd~~~~-~~~~~~~~~-~~v~~~~~~~--~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~--~-------  231 (350)
                       ..+.|++||.+.| .++..++.+ ..++.+.|..  .+.++.++.|++|++||-.+......+..+.+.  .       
T Consensus       178 -hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pf  256 (1081)
T KOG0309|consen  178 -HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPF  256 (1081)
T ss_pred             -cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccccc
Confidence             4468999999876 466666654 4566666653  456778888999999997653322222221111  1       


Q ss_pred             --eeEecCCCC-cEEEEecCCCeEEEEEcccC-eeEEeecCCCcCEEEEEEcCCC----------CEEEEecCCCcEEEe
Q 018784          232 --SASLEPKLG-NIFIAGGEDMWVHVFDFHTG-EQIGCNKGHHGPVHCVRFSPGG----------ESYASGSEDGTIRIW  297 (350)
Q Consensus       232 --~~~~~~~~~-~~l~sg~~d~~i~v~d~~~~-~~~~~~~~h~~~v~~l~~sp~~----------~~lasgs~Dg~v~vw  297 (350)
                        .....|..| +++.---.++....|+..++ +.++++.||.+.|....|-..+          -.|+|-|.|..+++|
T Consensus       257 g~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW  336 (1081)
T KOG0309|consen  257 GEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW  336 (1081)
T ss_pred             CceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence              111111111 11111111222333444443 5688999999988766553221          248999999999999


Q ss_pred             cCC
Q 018784          298 QTN  300 (350)
Q Consensus       298 ~~~  300 (350)
                      .+.
T Consensus       337 pI~  339 (1081)
T KOG0309|consen  337 PID  339 (1081)
T ss_pred             ecc
Confidence            875

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.14  E-value=1.8e-07  Score=83.32  Aligned_cols=236  Identities=15%  Similarity=0.110  Sum_probs=144.7

Q ss_pred             CCCccEEEEEeC----------CCCeeEeeCCCCceeeeccCccC-------CeEEEEECCCCcEEEEee-C-CCeEEEe
Q 018784           28 TPDGFFLVSASK----------DSSPMLRNGETGDWIGTFEGHKG-------AVWSCCLDANALFSASGS-A-DFTAKLW   88 (350)
Q Consensus        28 s~dg~~lasgs~----------d~~v~iw~~~~~~~~~~l~gH~~-------~V~~v~~~~~~~~l~s~s-~-Dg~v~vW   88 (350)
                      +|||+.|..+..          +..|.+||..+.+.+..+.--..       .-...++++||++++... . +..|-+.
T Consensus        54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~Vv  133 (352)
T TIGR02658        54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVV  133 (352)
T ss_pred             CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEE
Confidence            459887766665          78899999999999988763211       123678999999877554 3 7999999


Q ss_pred             eCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCe---eecCC-CCcE-EEEEEeCCCCcEEEE
Q 018784           89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR---EVGNS-SGSI-RTVAWLHSDQTILSS  163 (350)
Q Consensus        89 d~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~---~~~~~-~~~v-~~~~~~~~~~~~~~s  163 (350)
                      |+.+++.+..+.-.....-...+.+..+  +-+.|+......++.......   ..... ...+ ..-.+.+.++..+..
T Consensus       134 D~~~~kvv~ei~vp~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~v  211 (352)
T TIGR02658       134 DLEGKAFVRMMDVPDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWP  211 (352)
T ss_pred             ECCCCcEEEEEeCCCCcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEE
Confidence            9999988777665443222222222222  223444444433322111000   00000 0000 000234434555544


Q ss_pred             EeCCCeEEEEECCCC-----ceeEeecC--------CCCeEEEEEecCCcEEEE-Ec----------CCcEEEEECCCcc
Q 018784          164 CTDSGGVRLWDARSG-----KIVQTLET--------KSPVTSAEVSRDGRYITT-AD----------GSSVKFWDANHFG  219 (350)
Q Consensus       164 ~~~dg~i~iwd~~~~-----~~~~~~~~--------~~~v~~~~~~~~~~~l~~-~~----------~~~i~vwd~~~~~  219 (350)
                      ..+ |+|.+.|+...     +.+..+..        ...+.-++++++++.+.. ..          ++.|.++|..+.+
T Consensus       212 s~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k  290 (352)
T TIGR02658       212 TYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK  290 (352)
T ss_pred             ecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe
Confidence            444 99999996433     22222211        223445899999877654 31          2579999999999


Q ss_pred             eeeeeecCCCCceeEecCCCC-cEEEEecCCCeEEEEEcccCeeEEee
Q 018784          220 LVKGYNMPCNTESASLEPKLG-NIFIAGGEDMWVHVFDFHTGEQIGCN  266 (350)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~-~~l~sg~~d~~i~v~d~~~~~~~~~~  266 (350)
                      .+..+........+.+.++.. .++++...++.|.++|..+++.+..+
T Consensus       291 vi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       291 RLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            998888777777788887644 34445556888999999999988776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.13  E-value=1.6e-08  Score=93.79  Aligned_cols=272  Identities=13%  Similarity=0.089  Sum_probs=166.1

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc---------------eeeeccCccCCeEEEEECCCCcEEEEeeCC
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---------------WIGTFEGHKGAVWSCCLDANALFSASGSAD   82 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~---------------~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D   82 (350)
                      ...++.|+-   ...++|.|+.||.+++..+.+..               .-.+|+||.++|..+.|....+.|.|...+
T Consensus        16 kL~c~~WNk---e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   16 KLHCAEWNK---ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             eEEEEEEcc---cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            466777764   67799999999999997754321               124789999999999999999999999999


Q ss_pred             CeEEEeeCCCCCeee---eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCc
Q 018784           83 FTAKLWDALTGDEKH---SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (350)
Q Consensus        83 g~v~vWd~~~~~~~~---~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (350)
                      |.|.||-+..+.-..   .-..++.|.++.|+.+|+.++....||.|.+=.++....-.+.+..  .....+.|+++. .
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~-~  169 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDL-E  169 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccH-H
Confidence            999999987765221   1235667999999999999999999988877666533222222211  112356677544 3


Q ss_pred             EEEEEeCCCeEEEEECCCC-------ceeEeec-----CCCCeEEEEEe--------cCC-cEEEEEcCCcEEEEECCCc
Q 018784          160 ILSSCTDSGGVRLWDARSG-------KIVQTLE-----TKSPVTSAEVS--------RDG-RYITTADGSSVKFWDANHF  218 (350)
Q Consensus       160 ~~~s~~~dg~i~iwd~~~~-------~~~~~~~-----~~~~v~~~~~~--------~~~-~~l~~~~~~~i~vwd~~~~  218 (350)
                      .++-+-..|.+.++|....       .+.....     .+..+..+.|.        |+- .+.++-.+|.+.+.--.+.
T Consensus       170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND  249 (1189)
T KOG2041|consen  170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND  249 (1189)
T ss_pred             HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence            4444556689999997532       1111111     11224445543        222 2334445555554422221


Q ss_pred             ceeeeeecCCCCceeEecCCCCcEEEEecCCC---------eEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEec
Q 018784          219 GLVKGYNMPCNTESASLEPKLGNIFIAGGEDM---------WVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS  289 (350)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~---------~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs  289 (350)
                      ...-.+..+.......+++ +|..|++++.|.         .|++|.. -|..+.+++....-|++++|-..|-.+|- .
T Consensus       250 ~~Pvv~dtgm~~vgakWnh-~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~-A  326 (1189)
T KOG2041|consen  250 PEPVVVDTGMKIVGAKWNH-NGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAI-A  326 (1189)
T ss_pred             CCCeEEecccEeecceecC-CCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEE-E
Confidence            1111112222233344544 478888887642         4555542 35667777777778999999766644443 2


Q ss_pred             CCCcEEEec
Q 018784          290 EDGTIRIWQ  298 (350)
Q Consensus       290 ~Dg~v~vw~  298 (350)
                      -|+.|++=+
T Consensus       327 vdsfiyfan  335 (1189)
T KOG2041|consen  327 VDSFIYFAN  335 (1189)
T ss_pred             ecceEEEEe
Confidence            344554433

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.11  E-value=1.1e-08  Score=87.27  Aligned_cols=280  Identities=13%  Similarity=0.198  Sum_probs=164.2

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCCCeeEeeC----CCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG----ETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~----~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      ..+++++.|.+   +.+.|..|=..+++.=+.+    ++-..++.+..|...|..+-|+.....+++.+.|..+.---.+
T Consensus        68 P~~~~~~~y~~---e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e  144 (404)
T KOG1409|consen   68 PSPCSAMEYVS---ESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTE  144 (404)
T ss_pred             CCCceEeeeec---cceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeec
Confidence            44677887776   7788999988888876553    2344566778899999999999999999999999886533334


Q ss_pred             CCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC-eeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784           92 TGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP-REVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (350)
Q Consensus        92 ~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i  170 (350)
                      .+..+..+.-.....++.|.  -.+...|...+.|.+-.+......+ ....+|.+.+++.+|.+ .+.++.+|..|..+
T Consensus       145 ~~~~lg~Y~~~~~~t~~~~d--~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~v  221 (404)
T KOG1409|consen  145 SGNRLGGYNFETPASALQFD--ALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSV  221 (404)
T ss_pred             cCCcccceEeeccCCCCcee--eEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCce
Confidence            44333222111111111111  1144556666666666554333332 34567889999999975 55678899999999


Q ss_pred             EEEECCCCcee-Eeec-CCCCeEEEEEecCCc-EEEEEcCCcEEEEECCCcceeee----------eec-----------
Q 018784          171 RLWDARSGKIV-QTLE-TKSPVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVKG----------YNM-----------  226 (350)
Q Consensus       171 ~iwd~~~~~~~-~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~i~vwd~~~~~~~~~----------~~~-----------  226 (350)
                      .+||+.-.+-. ..++ +...+..++..+-.+ +++++.|+.|.+||++..+....          .+.           
T Consensus       222 i~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~  301 (404)
T KOG1409|consen  222 IMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWD  301 (404)
T ss_pred             EEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHh
Confidence            99998644322 2222 334455555544444 44566789999999864322110          000           


Q ss_pred             ---------CCCCc---eeEecCCCCcEEEEecCCCeEEEEEcc-----cC--eeEEeecCCCcCEEEEEEcCCCCEEEE
Q 018784          227 ---------PCNTE---SASLEPKLGNIFIAGGEDMWVHVFDFH-----TG--EQIGCNKGHHGPVHCVRFSPGGESYAS  287 (350)
Q Consensus       227 ---------~~~~~---~~~~~~~~~~~l~sg~~d~~i~v~d~~-----~~--~~~~~~~~h~~~v~~l~~sp~~~~las  287 (350)
                               ++...   .+............=+.+-.+|+.|.-     +.  ..+.....-...|++|.+...-.+|+|
T Consensus       302 ~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvT  381 (404)
T KOG1409|consen  302 RKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVT  381 (404)
T ss_pred             hhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceee
Confidence                     00000   000000001111111222334544421     11  123333222335899999888889999


Q ss_pred             ecCCCcEEEecCCC
Q 018784          288 GSEDGTIRIWQTNP  301 (350)
Q Consensus       288 gs~Dg~v~vw~~~~  301 (350)
                      ++.|..|+|||+.+
T Consensus       382 sG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  382 SGTDRVIKIWDVRS  395 (404)
T ss_pred             cCCceEEEEEechh
Confidence            99999999999864

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.10  E-value=1.4e-09  Score=92.56  Aligned_cols=199  Identities=20%  Similarity=0.289  Sum_probs=132.2

Q ss_pred             ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCC----CCeeecCC------------CCcEEEEEEeCCCC-cEEEE
Q 018784          101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA----PPREVGNS------------SGSIRTVAWLHSDQ-TILSS  163 (350)
Q Consensus       101 h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~----~~~~~~~~------------~~~v~~~~~~~~~~-~~~~s  163 (350)
                      ....+.++.|..+|.+|+||..+|.|-+|.-.....    .....+.|            ...|..+.|.++.+ ..++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            345688999999999999999999999997543222    11112222            23577788887654 34445


Q ss_pred             EeCCCeEEEEECCCCceeE---------------ee-----c-----------------CCCCeEEEEEecCCcEEEEEc
Q 018784          164 CTDSGGVRLWDARSGKIVQ---------------TL-----E-----------------TKSPVTSAEVSRDGRYITTAD  206 (350)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~---------------~~-----~-----------------~~~~v~~~~~~~~~~~l~~~~  206 (350)
                      .+.|.+|++|.++......               .+     .                 +.--++++.++.|...+.+++
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD  183 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD  183 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence            5688999999875421100               01     0                 112378889999999999999


Q ss_pred             CCcEEEEECCCcc-ee-----eeeecC---CCCceeEecCCCCcEEEEecCCCeEEEEEcccCee------EEe------
Q 018784          207 GSSVKFWDANHFG-LV-----KGYNMP---CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ------IGC------  265 (350)
Q Consensus       207 ~~~i~vwd~~~~~-~~-----~~~~~~---~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~------~~~------  265 (350)
                      |-.|.+|.+.-.. ..     +...+.   ....+.-|+|..-++|+..++-|+|++.|++..-+      +..      
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~  263 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS  263 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence            9999999875321 11     111111   11234556776678999999999999999984221      111      


Q ss_pred             ----ecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          266 ----NKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       266 ----~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                          +.+--..|..+.|+++|+++++-.. -+|++||+.
T Consensus       264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~n  301 (433)
T KOG1354|consen  264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLN  301 (433)
T ss_pred             chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecc
Confidence                1122346889999999999987544 589999983

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.09  E-value=2.6e-07  Score=94.40  Aligned_cols=238  Identities=10%  Similarity=0.118  Sum_probs=149.7

Q ss_pred             eEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccC-c-------------cCCeEEEEECCCCcEE-EEeeCCCe
Q 018784           20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-H-------------KGAVWSCCLDANALFS-ASGSADFT   84 (350)
Q Consensus        20 ~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~g-H-------------~~~V~~v~~~~~~~~l-~s~s~Dg~   84 (350)
                      ..+++++  .++.+.++-+..+.|+++|.. +..+..+.+ .             -..-..+++++++..+ ++-...+.
T Consensus       571 ~gvavd~--~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~  647 (1057)
T PLN02919        571 GKLAIDL--LNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA  647 (1057)
T ss_pred             ceEEEEC--CCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence            3566654  246677888888999999965 444444432 1             1123578888877644 44444578


Q ss_pred             EEEeeCCCCCeeeeeec------------------cccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCCCCee-----
Q 018784           85 AKLWDALTGDEKHSFEH------------------KHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPRE-----  140 (350)
Q Consensus        85 v~vWd~~~~~~~~~~~h------------------~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~-----  140 (350)
                      |+++|..++... ++..                  -+....++++| ++.++++.+.++.|++||...+......     
T Consensus       648 Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~  726 (1057)
T PLN02919        648 LREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE  726 (1057)
T ss_pred             EEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence            999998665432 2210                  12346789999 5666677778899999998653211000     


Q ss_pred             --e------cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec--------------C--------CCCe
Q 018784          141 --V------GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--------------T--------KSPV  190 (350)
Q Consensus       141 --~------~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~--------------~--------~~~v  190 (350)
                        .      ...-.....+++.++++.++++-..++.|++||+.++.......              .        -...
T Consensus       727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P  806 (1057)
T PLN02919        727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP  806 (1057)
T ss_pred             ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence              0      00112355688887777788888888999999998765321110              0        0123


Q ss_pred             EEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecC--------------CCCceeEecCCCCcEEEEecCCCeEEEE
Q 018784          191 TSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMP--------------CNTESASLEPKLGNIFIAGGEDMWVHVF  255 (350)
Q Consensus       191 ~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~sg~~d~~i~v~  255 (350)
                      ..++++++|.++++. .++.|++||..+..........              ..+..+.+.+ +++++++-+.++.|++|
T Consensus       807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvi  885 (1057)
T PLN02919        807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYL  885 (1057)
T ss_pred             ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEE
Confidence            578889999876665 4678999998765443211100              0123344444 57899999999999999


Q ss_pred             EcccCee
Q 018784          256 DFHTGEQ  262 (350)
Q Consensus       256 d~~~~~~  262 (350)
                      |+.+++.
T Consensus       886 d~~~~~~  892 (1057)
T PLN02919        886 DLNKGEA  892 (1057)
T ss_pred             ECCCCcc
Confidence            9988764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=1.6e-07  Score=87.28  Aligned_cols=193  Identities=15%  Similarity=0.052  Sum_probs=114.0

Q ss_pred             cCCCccE---EEEEeCCCC--eeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEee-C----CCeEEEeeCCCC---
Q 018784           27 ITPDGFF---LVSASKDSS--PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS-A----DFTAKLWDALTG---   93 (350)
Q Consensus        27 ~s~dg~~---lasgs~d~~--v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s-~----Dg~v~vWd~~~~---   93 (350)
                      ++|||+.   +.+.-.++.  |.+.++.+++.. .+....+.....+|+|||+.++-.+ .    |-.+..|++..+   
T Consensus       192 wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g  270 (428)
T PRK01029        192 WMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIG  270 (428)
T ss_pred             EccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCC
Confidence            5569864   234444444  566677766542 2222333344578999998766433 2    334555776542   


Q ss_pred             Ceeeeeec-cccEeEEEEcCCCCeEEEee-CCCeEEEEE--CCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC--
Q 018784           94 DEKHSFEH-KHIVRACAFSEDTHLLLTGG-FEKILRIFD--LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS--  167 (350)
Q Consensus        94 ~~~~~~~h-~~~V~~~~~~~~~~~l~sg~-~d~~v~vwd--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d--  167 (350)
                      ........ ........|+|||+.|+..+ .++...+|.  +.........+......+....|+|+++.++.+...+  
T Consensus       271 ~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~  350 (428)
T PRK01029        271 KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGV  350 (428)
T ss_pred             cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCC
Confidence            22222222 23446779999999877654 466556664  4321222232333344566788998777776665543  


Q ss_pred             CeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEE-Ec---CCcEEEEECCCcce
Q 018784          168 GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-AD---GSSVKFWDANHFGL  220 (350)
Q Consensus       168 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~---~~~i~vwd~~~~~~  220 (350)
                      ..|.+||+.+++..........+....|+|||+.|+. +.   ...|.++|+.....
T Consensus       351 ~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        351 RQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             cEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            3699999988876443333345677889999987753 32   24688888866543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.05  E-value=5.5e-07  Score=80.15  Aligned_cols=169  Identities=18%  Similarity=0.231  Sum_probs=127.2

Q ss_pred             CccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCC-eEEEeeCCCCCeeeeeeccccEeEE
Q 018784           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF-TAKLWDALTGDEKHSFEHKHIVRAC  108 (350)
Q Consensus        30 dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg-~v~vWd~~~~~~~~~~~h~~~V~~~  108 (350)
                      +|.++|..|. |+..|.+...+..+.  -+|.+.|+=..+..++.-++-|-.|| .+-|+|..+++.......-+.|.++
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av  407 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAV  407 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEE
Confidence            5779998887 778887766555442  36778898888888888888899999 8999999988877666666789999


Q ss_pred             EEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe----CCCeEEEEECCCCceeEee
Q 018784          109 AFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT----DSGGVRLWDARSGKIVQTL  184 (350)
Q Consensus       109 ~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~----~dg~i~iwd~~~~~~~~~~  184 (350)
                      ..+|+|++++.+-....+.+.|++++... .......+-|+.+.|+++.. +++-+-    ....|+++|+..++....-
T Consensus       408 ~vs~dGK~~vvaNdr~el~vididngnv~-~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~~Kiy~vT  485 (668)
T COG4946         408 KVSPDGKKVVVANDRFELWVIDIDNGNVR-LIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDGGKIYDVT  485 (668)
T ss_pred             EEcCCCcEEEEEcCceEEEEEEecCCCee-EecccccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCCCeEEEec
Confidence            99999999999998889999999876543 23345567899999986544 444333    3357999999988876544


Q ss_pred             cCCCCeEEEEEecCCcEEE
Q 018784          185 ETKSPVTSAEVSRDGRYIT  203 (350)
Q Consensus       185 ~~~~~v~~~~~~~~~~~l~  203 (350)
                      .....=.+-+|.|++++|.
T Consensus       486 T~ta~DfsPaFD~d~ryLY  504 (668)
T COG4946         486 TPTAYDFSPAFDPDGRYLY  504 (668)
T ss_pred             CCcccccCcccCCCCcEEE
Confidence            4333334556888988763

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.03  E-value=1.5e-08  Score=84.72  Aligned_cols=149  Identities=15%  Similarity=0.203  Sum_probs=109.1

Q ss_pred             CCCccEEEEEeCCCCeeEeeCCCCceee--eccCccCCeEEEEECC-CCcEEEEeeCCCeEEEeeCCCCC-eee--eeec
Q 018784           28 TPDGFFLVSASKDSSPMLRNGETGDWIG--TFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALTGD-EKH--SFEH  101 (350)
Q Consensus        28 s~dg~~lasgs~d~~v~iw~~~~~~~~~--~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~~~-~~~--~~~h  101 (350)
                      ++.|.-++++-.+|.+.+-+.......+  ++++|.-.++.+.|+. +..++.|||.|+.+..||+.... .+.  ...|
T Consensus       130 ~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH  209 (339)
T KOG0280|consen  130 STSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVH  209 (339)
T ss_pred             eccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceee
Confidence            3467778888888888865544444444  7899999999999964 56799999999999999987322 222  2358


Q ss_pred             cccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCC-cEEEEEeCCCeEEEEECCCC
Q 018784          102 KHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ-TILSSCTDSGGVRLWDARSG  178 (350)
Q Consensus       102 ~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~s~~~dg~i~iwd~~~~  178 (350)
                      ...|.++.-+| .+.+++||+.|..|++||.+.-..+... ....+.|+-+.+.|... .++++|.. +..+|-++..+
T Consensus       210 ~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~-~~v~GGVWRi~~~p~~~~~lL~~CMh-~G~ki~~~~~~  286 (339)
T KOG0280|consen  210 TSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK-AKVGGGVWRIKHHPEIFHRLLAACMH-NGAKILDSSDK  286 (339)
T ss_pred             ecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc-CccccceEEEEecchhhhHHHHHHHh-cCceEEEeccc
Confidence            88899998876 6789999999999999999865544433 33447788998887654 45566655 45677776544

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.02  E-value=7.2e-07  Score=80.01  Aligned_cols=277  Identities=16%  Similarity=0.203  Sum_probs=169.9

Q ss_pred             ceeEEEecccCCCccEEEEEeC---------------CCCeeEeeCCCCceeeeccCccCC--eE-EEEECCCCcEEEEe
Q 018784           18 PVVDLFYSPITPDGFFLVSASK---------------DSSPMLRNGETGDWIGTFEGHKGA--VW-SCCLDANALFSASG   79 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~---------------d~~v~iw~~~~~~~~~~l~gH~~~--V~-~v~~~~~~~~l~s~   79 (350)
                      .|..+.|+   |.++||.|=+.               ++.+.+||..+|..+..+.+-..+  .+ .+.|+.+..++|=-
T Consensus        73 ~V~~~~fS---P~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv  149 (561)
T COG5354          73 DVKYLDFS---PNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV  149 (561)
T ss_pred             CceecccC---cccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh
Confidence            45555555   59999988764               334899999999999999887766  66 67888888776533


Q ss_pred             eCCCeEEEeeCCCCCeeeeee--ccccEeEEEEcCCC--CeEEE-----eeCCCeEEEEECCCCCCCCeeecCCCCcEEE
Q 018784           80 SADFTAKLWDALTGDEKHSFE--HKHIVRACAFSEDT--HLLLT-----GGFEKILRIFDLNRPDAPPREVGNSSGSIRT  150 (350)
Q Consensus        80 s~Dg~v~vWd~~~~~~~~~~~--h~~~V~~~~~~~~~--~~l~s-----g~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~  150 (350)
                       ....+.|+++..+-...-+.  ....+....++|.+  ..|+.     .+...++++|.+...... ....-....-..
T Consensus       150 -v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l-~tk~lfk~~~~q  227 (561)
T COG5354         150 -VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVL-VTKNLFKVSGVQ  227 (561)
T ss_pred             -ccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCee-eeeeeEeecccE
Confidence             34578888872222222111  12346677777753  33433     567888999988643221 111001112234


Q ss_pred             EEEeCCCCcEEEEE----------eCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE---cCCcEEEEECCC
Q 018784          151 VAWLHSDQTILSSC----------TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA---DGSSVKFWDANH  217 (350)
Q Consensus       151 ~~~~~~~~~~~~s~----------~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~~~i~vwd~~~  217 (350)
                      +.|...+..+++-.          .....+.|++++...+........+|...+|.|.++.++..   ....+.++|++.
T Consensus       228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~  307 (561)
T COG5354         228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG  307 (561)
T ss_pred             EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeeccccc
Confidence            45554444333211          12357888988755444444567899999999988765543   356789999886


Q ss_pred             cceeeeeecCCCC-ceeEecCCCCcEEEEecCC---CeEEEEEcccCeeEE-eecCCCcCEEEEEEcCCCCEEEEec---
Q 018784          218 FGLVKGYNMPCNT-ESASLEPKLGNIFIAGGED---MWVHVFDFHTGEQIG-CNKGHHGPVHCVRFSPGGESYASGS---  289 (350)
Q Consensus       218 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~sg~~d---~~i~v~d~~~~~~~~-~~~~h~~~v~~l~~sp~~~~lasgs---  289 (350)
                      .  +. +..+... ....|+| ..++++.++-|   |.|.+||....-... .+.+-.  ..-+.|+|+++++.+.-   
T Consensus       308 N--l~-~~~Pe~~rNT~~fsp-~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~  381 (561)
T COG5354         308 N--LR-FYFPEQKRNTIFFSP-HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSE  381 (561)
T ss_pred             c--eE-EecCCcccccccccC-cccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCc
Confidence            5  22 2333333 3344444 56777776654   579999976554433 444333  24467999999876543   


Q ss_pred             ---CCCcEEEecCCCCCcc
Q 018784          290 ---EDGTIRIWQTNPPNHE  305 (350)
Q Consensus       290 ---~Dg~v~vw~~~~~~~~  305 (350)
                         .|..|+||++..+..-
T Consensus       382 k~~~Dn~i~l~~v~g~~~f  400 (561)
T COG5354         382 KLRVDNSIKLWDVYGAKVF  400 (561)
T ss_pred             ccccCcceEEEEecCchhh
Confidence               4889999998755444

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.01  E-value=1e-08  Score=86.31  Aligned_cols=210  Identities=19%  Similarity=0.327  Sum_probs=136.7

Q ss_pred             cCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC-----CceeeeccCccC------------CeEEEEECCCC-c-E
Q 018784           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-----GDWIGTFEGHKG------------AVWSCCLDANA-L-F   75 (350)
Q Consensus        15 H~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~-----~~~~~~l~gH~~------------~V~~v~~~~~~-~-~   75 (350)
                      -.+-|++|-|..   .|.||++|...|.|.++.-+.     .+..+.|++|..            .|..+.|-.++ + .
T Consensus        25 ead~ItaVefd~---tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h  101 (460)
T COG5170          25 EADKITAVEFDE---TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH  101 (460)
T ss_pred             ccceeeEEEecc---ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence            355678888875   788999999989998876443     234556777764            35666664432 2 3


Q ss_pred             EEEeeCCCeEEEeeCCCCC-------------------ee-----------------------eee--eccccEeEEEEc
Q 018784           76 SASGSADFTAKLWDALTGD-------------------EK-----------------------HSF--EHKHIVRACAFS  111 (350)
Q Consensus        76 l~s~s~Dg~v~vWd~~~~~-------------------~~-----------------------~~~--~h~~~V~~~~~~  111 (350)
                      +.-...|.+|++|.+....                   ++                       +.+  .|+-.+.++.|+
T Consensus       102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N  181 (460)
T COG5170         102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN  181 (460)
T ss_pred             EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence            3444699999999764320                   00                       000  155567889999


Q ss_pred             CCCCeEEEeeCCCeEEEEECCCCCCCCe--eecCC-----CCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCcee---
Q 018784          112 EDTHLLLTGGFEKILRIFDLNRPDAPPR--EVGNS-----SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV---  181 (350)
Q Consensus       112 ~~~~~l~sg~~d~~v~vwd~~~~~~~~~--~~~~~-----~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~---  181 (350)
                      .+.+.++++ .|-.|.+|+++.......  ..++|     ...|++..|.|....++.-.+..|+|++-|+|+....   
T Consensus       182 sD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~  260 (460)
T COG5170         182 SDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS  260 (460)
T ss_pred             Cchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence            988888765 477899999875433211  11222     2346666676665555554556699999999954321   


Q ss_pred             ---Eee--cC---------CCCeEEEEEecCCcEEEEEcCCcEEEEECCCc-ceeeeeecCC
Q 018784          182 ---QTL--ET---------KSPVTSAEVSRDGRYITTADGSSVKFWDANHF-GLVKGYNMPC  228 (350)
Q Consensus       182 ---~~~--~~---------~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~-~~~~~~~~~~  228 (350)
                         ...  ..         -..|..+.|+++|+++++.+=-++++||.+.. .++++..+++
T Consensus       261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~  322 (460)
T COG5170         261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHC  322 (460)
T ss_pred             hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHH
Confidence               111  11         14677889999999999888789999998764 4666665543

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.99  E-value=2.4e-07  Score=84.35  Aligned_cols=184  Identities=13%  Similarity=0.185  Sum_probs=134.2

Q ss_pred             CCccEEEEEeCCCCeeEeeCCCCceeeeccC--cc-CC----eEEEEE----------------CCCCcEEEEeeCCCeE
Q 018784           29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEG--HK-GA----VWSCCL----------------DANALFSASGSADFTA   85 (350)
Q Consensus        29 ~dg~~lasgs~d~~v~iw~~~~~~~~~~l~g--H~-~~----V~~v~~----------------~~~~~~l~s~s~Dg~v   85 (350)
                      |...++|..+.||.++||+..+++.-..|..  |. +.    ++.+..                +.+-..++=|-..|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            3567999999999999999988776555532  21 22    222211                1233466777788999


Q ss_pred             EEeeCCCCCeeeee---eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEE
Q 018784           86 KLWDALTGDEKHSF---EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS  162 (350)
Q Consensus        86 ~vWd~~~~~~~~~~---~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  162 (350)
                      .+++...++....+   .|.+.|.++.++.+...|.+++.|..+..|+........ ........+.+++.++ ++.+++
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~-~~~~~~~~~~sl~is~-D~~~l~  160 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIR-IWKEQKPLVSSLCISP-DGKILL  160 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeee-eeccCCCccceEEEcC-CCCEEE
Confidence            99999888766665   489999999999999999999999999999986543322 2234455677777765 477777


Q ss_pred             EEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecC-----CcEEEEEc--CCcEEEEECC
Q 018784          163 SCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRD-----GRYITTAD--GSSVKFWDAN  216 (350)
Q Consensus       163 s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~-----~~~l~~~~--~~~i~vwd~~  216 (350)
                      +++  ++|++||+++++.+..+.++ +++..+.|..+     |+++.++.  +..+.+|-..
T Consensus       161 ~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  161 TAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             ecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence            766  58999999999999999865 68888998766     66665543  3456777543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.95  E-value=2e-09  Score=63.95  Aligned_cols=39  Identities=38%  Similarity=0.660  Sum_probs=37.1

Q ss_pred             CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784           51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (350)
Q Consensus        51 ~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd   89 (350)
                      ++++.++.+|++.|++++|+|++.+++|++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.95  E-value=1.9e-06  Score=79.46  Aligned_cols=255  Identities=13%  Similarity=0.065  Sum_probs=152.4

Q ss_pred             cEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEE-EEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEE--
Q 018784           32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS-CCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRAC--  108 (350)
Q Consensus        32 ~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~-v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~--  108 (350)
                      ..|..++.++.+.-+|.++|+.+....... .+.+ ..+ .++. ++.+..++.+..+|..+++.+...........+  
T Consensus       121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v-~~~~-v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~  197 (394)
T PRK11138        121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV-SDGL-VLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG  197 (394)
T ss_pred             CEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE-ECCE-EEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence            355667788999999999998877665332 2221 111 1344 445677899999999999988776532211000  


Q ss_pred             EEcC--CCCeEEEeeCCCeEEEEECCCCCCCCeeec-CCCC-----cE----EEEEEeCCCCcEEEEEeCCCeEEEEECC
Q 018784          109 AFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVG-NSSG-----SI----RTVAWLHSDQTILSSCTDSGGVRLWDAR  176 (350)
Q Consensus       109 ~~~~--~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~-~~~~-----~v----~~~~~~~~~~~~~~s~~~dg~i~iwd~~  176 (350)
                      ..+|  .+..++.++.++.+..+|..+++....... ...+     ..    .+...  .++.++ .++.++.+..+|+.
T Consensus       198 ~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v--~~~~vy-~~~~~g~l~ald~~  274 (394)
T PRK11138        198 ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV--VGGVVY-ALAYNGNLVALDLR  274 (394)
T ss_pred             CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEE--ECCEEE-EEEcCCeEEEEECC
Confidence            0112  123566677888888888876654332211 0000     00    01111  134444 45567999999999


Q ss_pred             CCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCC-CC-ceeEecCCCCcEEEEecCCCeEEE
Q 018784          177 SGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPC-NT-ESASLEPKLGNIFIAGGEDMWVHV  254 (350)
Q Consensus       177 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~sg~~d~~i~v  254 (350)
                      +|+.+........ ..+.. .++++++...++.+..+|..++..+....... .. ....+   .+.+++.++.||.|++
T Consensus       275 tG~~~W~~~~~~~-~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v---~~g~l~v~~~~G~l~~  349 (394)
T PRK11138        275 SGQIVWKREYGSV-NDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL---YNGYLVVGDSEGYLHW  349 (394)
T ss_pred             CCCEEEeecCCCc-cCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE---ECCEEEEEeCCCEEEE
Confidence            9988766543321 11222 34566667778899999998876654332211 11 11111   2567788899999999


Q ss_pred             EEcccCeeEEeecCCCcCEEE-EEEcCCCCEEEEecCCCcEEEecC
Q 018784          255 FDFHTGEQIGCNKGHHGPVHC-VRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       255 ~d~~~~~~~~~~~~h~~~v~~-l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                      +|..+|+.+....-....+.+ -.+  .+..|+.++.||.|+.++.
T Consensus       350 ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        350 INREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             EECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            999999987665433322322 122  2346778899999988764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.94  E-value=5.8e-07  Score=76.74  Aligned_cols=215  Identities=18%  Similarity=0.131  Sum_probs=129.4

Q ss_pred             CCCeeEeeCCCCceeeeccC-c-cCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeE
Q 018784           40 DSSPMLRNGETGDWIGTFEG-H-KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLL  117 (350)
Q Consensus        40 d~~v~iw~~~~~~~~~~l~g-H-~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l  117 (350)
                      +++|..+|..+|+.+....- . .....+..+ +++..++.++.++.+..||..+++.+........+.... ...+..+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v   79 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRV   79 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eeccccc
Confidence            57888899988888776632 0 122221122 244555566899999999999999887776433322222 2234556


Q ss_pred             EEeeCCCeEEEEECCCCCCCCee-ecCC--CC--cEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCC---
Q 018784          118 LTGGFEKILRIFDLNRPDAPPRE-VGNS--SG--SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP---  189 (350)
Q Consensus       118 ~sg~~d~~v~vwd~~~~~~~~~~-~~~~--~~--~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~---  189 (350)
                      +.+..++.+..+|+.+++..... ....  ..  ........   +..++.+..++.|..+|+++|+.+.......+   
T Consensus        80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~  156 (238)
T PF13360_consen   80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD---GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS  156 (238)
T ss_dssp             EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE---TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred             ccccceeeeEecccCCcceeeeeccccccccccccccCceEe---cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence            66778889999998877655442 2111  01  11122222   33445555679999999999999877765321   


Q ss_pred             --------eEEEEEecCCcEEEEEcCCc-EEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccC
Q 018784          190 --------VTSAEVSRDGRYITTADGSS-VKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG  260 (350)
Q Consensus       190 --------v~~~~~~~~~~~l~~~~~~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~  260 (350)
                              +..-.+..++.++++..++. +.+ |..+++.+.... . ........ ..+..+++++.++.|..||+.+|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~-~-~~~~~~~~-~~~~~l~~~~~~~~l~~~d~~tG  232 (238)
T PF13360_consen  157 SPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP-I-SGIYSLPS-VDGGTLYVTSSDGRLYALDLKTG  232 (238)
T ss_dssp             --EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC-S-S-ECECEE-CCCTEEEEEETTTEEEEEETTTT
T ss_pred             cceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec-C-CCccCCce-eeCCEEEEEeCCCEEEEEECCCC
Confidence                    12222334556666665664 555 999887554322 1 11111122 23566666669999999999999


Q ss_pred             eeE
Q 018784          261 EQI  263 (350)
Q Consensus       261 ~~~  263 (350)
                      +.+
T Consensus       233 ~~~  235 (238)
T PF13360_consen  233 KVV  235 (238)
T ss_dssp             EEE
T ss_pred             CEE
Confidence            864

...

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.92  E-value=7.2e-06  Score=82.68  Aligned_cols=276  Identities=13%  Similarity=0.223  Sum_probs=175.1

Q ss_pred             CceeEEEecccCCCccEEEEEeCCCCeeEe----eCCCC--ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLR----NGETG--DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (350)
Q Consensus        17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw----~~~~~--~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~   90 (350)
                      +.|.++.|-+   |...+..+..+|.|.+.    +....  +.+..++   ..|.+++|+||..+++-...++++.+-..
T Consensus        76 ~~ivs~~yl~---d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd---~GI~a~~WSPD~Ella~vT~~~~l~~mt~  149 (928)
T PF04762_consen   76 DKIVSFQYLA---DSESLCIALASGDIILVREDPDPDEDEIEIVGSVD---SGILAASWSPDEELLALVTGEGNLLLMTR  149 (928)
T ss_pred             CcEEEEEecc---CCCcEEEEECCceEEEEEccCCCCCceeEEEEEEc---CcEEEEEECCCcCEEEEEeCCCEEEEEec
Confidence            4677777765   77778888888998888    44333  3334443   68999999999999988888888877531


Q ss_pred             C-------------CCC--ee--------eee-------------------------eccccEeEEEEcCCCCeEEEeeC
Q 018784           91 L-------------TGD--EK--------HSF-------------------------EHKHIVRACAFSEDTHLLLTGGF  122 (350)
Q Consensus        91 ~-------------~~~--~~--------~~~-------------------------~h~~~V~~~~~~~~~~~l~sg~~  122 (350)
                      .             .+.  .+        ..+                         .....-..+.|-.||+++|+.+-
T Consensus       150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~  229 (928)
T PF04762_consen  150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSV  229 (928)
T ss_pred             cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEE
Confidence            0             010  00        000                         01112346789999999998764


Q ss_pred             ------CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeC---CCeEEEEECCCCceeEeec-----CCC
Q 018784          123 ------EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD---SGGVRLWDARSGKIVQTLE-----TKS  188 (350)
Q Consensus       123 ------d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~---dg~i~iwd~~~~~~~~~~~-----~~~  188 (350)
                            -+.+|||+-+ +.. ........+--.+++|-|.+. ++++.-.   ...|.+|. |+|-....+.     ...
T Consensus       230 ~~~~~~~R~iRVy~Re-G~L-~stSE~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~  305 (928)
T PF04762_consen  230 EPETGSRRVIRVYSRE-GEL-QSTSEPVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEE  305 (928)
T ss_pred             EcCCCceeEEEEECCC-ceE-EeccccCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCc
Confidence                  2679999865 221 111112233344678877655 4444332   24677777 5554333332     235


Q ss_pred             CeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecC--C--CCceeEecCCCCcEEEEecCCCeEEEEEc----ccC
Q 018784          189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP--C--NTESASLEPKLGNIFIAGGEDMWVHVFDF----HTG  260 (350)
Q Consensus       189 ~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~l~sg~~d~~i~v~d~----~~~  260 (350)
                      .+..+.|++++.+|+..-...|.+|-..++....++...  .  ....+.+++.....|...+.++.+..+++    ..+
T Consensus       306 ~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s  385 (928)
T PF04762_consen  306 KVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRS  385 (928)
T ss_pred             eeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEec
Confidence            789999999999998876667999999888755444332  2  22346777776777777777666655443    211


Q ss_pred             e--------eEEe----------e-------------cCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCC
Q 018784          261 E--------QIGC----------N-------------KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPP  302 (350)
Q Consensus       261 ~--------~~~~----------~-------------~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~  302 (350)
                      .        .+..          +             -....+|.+++|++++..+|.-..||.|.+|.....
T Consensus       386 ~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  386 PGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             CCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence            1        0111          0             112467999999999888999999999999985443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.91  E-value=3.7e-09  Score=62.72  Aligned_cols=39  Identities=41%  Similarity=0.848  Sum_probs=36.3

Q ss_pred             CeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          260 GEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       260 ~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      |+++..+.+|..+|++|+|+|++.+|++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            356778899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.91  E-value=2.8e-05  Score=67.35  Aligned_cols=260  Identities=15%  Similarity=0.207  Sum_probs=160.3

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCC---CCeeE--eeCCCCceee----eccCccCCeEEEEECCCCcEEEEeeCC-C
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKD---SSPML--RNGETGDWIG----TFEGHKGAVWSCCLDANALFSASGSAD-F   83 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d---~~v~i--w~~~~~~~~~----~l~gH~~~V~~v~~~~~~~~l~s~s~D-g   83 (350)
                      .+.+.++=++++|   +.+.|.++-.+   +.+--  ||..+|++..    .+.|+..  .-+++++++++++++.-. |
T Consensus        37 ~~~~nptyl~~~~---~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p--~yvsvd~~g~~vf~AnY~~g  111 (346)
T COG2706          37 AELGNPTYLAVNP---DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP--CYVSVDEDGRFVFVANYHSG  111 (346)
T ss_pred             cccCCCceEEECC---CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC--eEEEECCCCCEEEEEEccCc
Confidence            3455566666665   88888777655   44444  4444465532    2333322  568999999999887654 8


Q ss_pred             eEEEeeCCC-CCee---eeeecccc----------EeEEEEcCCCCeEEEeeC-CCeEEEEECCCCCCCCee--ecCCCC
Q 018784           84 TAKLWDALT-GDEK---HSFEHKHI----------VRACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPRE--VGNSSG  146 (350)
Q Consensus        84 ~v~vWd~~~-~~~~---~~~~h~~~----------V~~~~~~~~~~~l~sg~~-d~~v~vwd~~~~~~~~~~--~~~~~~  146 (350)
                      .|.+..+.. +...   ..+.|.+.          +.+..|.|++++|++..- -..|.+|++..+......  ......
T Consensus       112 ~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~  191 (346)
T COG2706         112 SVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGA  191 (346)
T ss_pred             eEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCC
Confidence            899998754 3322   23345544          888999999999988753 346899999865443221  113344


Q ss_pred             cEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC-ceeEeec----------CCCCeEEEEEecCCcEEEEEcCC--cEEEE
Q 018784          147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLE----------TKSPVTSAEVSRDGRYITTADGS--SVKFW  213 (350)
Q Consensus       147 ~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~-~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~~--~i~vw  213 (350)
                      ..+.+.|.|..+...+.+--+++|.+|..... ..+..++          .......+.+++||++|.+++.+  .|-+|
T Consensus       192 GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f  271 (346)
T COG2706         192 GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF  271 (346)
T ss_pred             CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence            56788888777766777888899999998763 2222222          23567788999999999988754  57776


Q ss_pred             ECCCc--ce--eeeeecCCC-CceeEecCCCCcEEEEecCCC-eEEEEEcc--cCeeEEeec-CCCcCEEEEEEc
Q 018784          214 DANHF--GL--VKGYNMPCN-TESASLEPKLGNIFIAGGEDM-WVHVFDFH--TGEQIGCNK-GHHGPVHCVRFS  279 (350)
Q Consensus       214 d~~~~--~~--~~~~~~~~~-~~~~~~~~~~~~~l~sg~~d~-~i~v~d~~--~~~~~~~~~-~h~~~v~~l~~s  279 (350)
                      .+...  .+  +........ +....+.+ .+++|++..+++ .|.+|..+  +|++-.... .......||.|.
T Consensus       272 ~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         272 SVDPDGGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             EEcCCCCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            55432  21  111222222 33444554 467777776654 58888654  555533332 233345666664

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=5.8e-08  Score=85.63  Aligned_cols=276  Identities=16%  Similarity=0.154  Sum_probs=179.4

Q ss_pred             cCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC---CceeeeccCccCCeEEEEECCCCcEEEEeeC-CCeEEEeeC
Q 018784           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET---GDWIGTFEGHKGAVWSCCLDANALFSASGSA-DFTAKLWDA   90 (350)
Q Consensus        15 H~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~---~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~-Dg~v~vWd~   90 (350)
                      |.+.|+.+...    -.+++.++|-||.++.|-...   -+.+..+..|-..|.+++.+-++.++.|.+. |..+|++|+
T Consensus         8 hrd~i~hv~~t----ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv   83 (558)
T KOG0882|consen    8 HRDVITHVFPT----KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV   83 (558)
T ss_pred             ccceeeeEeee----hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence            77778877654    356999999999999998543   3566677889999999999999999999887 999999998


Q ss_pred             CCCCeeeeee---ccccEeEEEEcCC-CC-eE-EEeeCCCeEEEEECCCCC-CCCeeecCCCCcEEEEEEeCCCCcEEEE
Q 018784           91 LTGDEKHSFE---HKHIVRACAFSED-TH-LL-LTGGFEKILRIFDLNRPD-APPREVGNSSGSIRTVAWLHSDQTILSS  163 (350)
Q Consensus        91 ~~~~~~~~~~---h~~~V~~~~~~~~-~~-~l-~sg~~d~~v~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~s  163 (350)
                      +.-....-+.   -++.+.++ .++. .. .+ ++.-.++.+.++|-.... ......+-|..+|..+.+.+.. ..++|
T Consensus        84 En~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~-Ds~vS  161 (558)
T KOG0882|consen   84 ENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG-DSAVS  161 (558)
T ss_pred             eccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc-cceee
Confidence            7665432222   22222221 2222 11 23 333457889999875444 3334456678888888877544 45666


Q ss_pred             EeCCCeEEEEECCC------CceeEeec----------CCCCeEEEEEecCCcEEEE-EcCCcEEEEECCCcceeeeeec
Q 018784          164 CTDSGGVRLWDARS------GKIVQTLE----------TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNM  226 (350)
Q Consensus       164 ~~~dg~i~iwd~~~------~~~~~~~~----------~~~~v~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~~~~~~~~  226 (350)
                      ....|.|..|....      .+....++          ......++.|+|++..+.+ +.|..||+++.++++.++.+.-
T Consensus       162 iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE  241 (558)
T KOG0882|consen  162 IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE  241 (558)
T ss_pred             ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence            66679999998762      12222222          2345678999999988865 4688999999988776543320


Q ss_pred             ---------------------------------CCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecC-----
Q 018784          227 ---------------------------------PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG-----  268 (350)
Q Consensus       227 ---------------------------------~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~-----  268 (350)
                                                       .............+++|+.|+-=| |++.++.+++.++.+.-     
T Consensus       242 ~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir  320 (558)
T KOG0882|consen  242 VLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIR  320 (558)
T ss_pred             cchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhh
Confidence                                             000111122233578888877654 78888888876654311     


Q ss_pred             -------------CCcCE-------EEEEEcCCCCEEEEecCCCcEEEe
Q 018784          269 -------------HHGPV-------HCVRFSPGGESYASGSEDGTIRIW  297 (350)
Q Consensus       269 -------------h~~~v-------~~l~~sp~~~~lasgs~Dg~v~vw  297 (350)
                                   +....       ..+.+.+|..+++++=...+++++
T Consensus       321 ~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf  369 (558)
T KOG0882|consen  321 FTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF  369 (558)
T ss_pred             hhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence                         11100       113356666667777777888888

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.91  E-value=2.2e-06  Score=74.04  Aligned_cols=220  Identities=14%  Similarity=0.168  Sum_probs=138.6

Q ss_pred             CCeEEEeeCCCCCe----eeeeeccccEeEEEEcCCCCeEEEeeC---CCeEEEEECCCC--CCCCeeecCC-CCcEEEE
Q 018784           82 DFTAKLWDALTGDE----KHSFEHKHIVRACAFSEDTHLLLTGGF---EKILRIFDLNRP--DAPPREVGNS-SGSIRTV  151 (350)
Q Consensus        82 Dg~v~vWd~~~~~~----~~~~~h~~~V~~~~~~~~~~~l~sg~~---d~~v~vwd~~~~--~~~~~~~~~~-~~~v~~~  151 (350)
                      ++-|.+|++.+...    .........++-++|+|+.+.|+++-.   ++.|..|.++..  .......... ....+-+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            67889998874332    223356677899999999999998754   577888887642  2211111111 1222566


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEECCC-Cce---eEeecCCCC----------eEEEEEecCCcEEEEEcC--CcEEEEEC
Q 018784          152 AWLHSDQTILSSCTDSGGVRLWDARS-GKI---VQTLETKSP----------VTSAEVSRDGRYITTADG--SSVKFWDA  215 (350)
Q Consensus       152 ~~~~~~~~~~~s~~~dg~i~iwd~~~-~~~---~~~~~~~~~----------v~~~~~~~~~~~l~~~~~--~~i~vwd~  215 (350)
                      +..++++.++++...-|.|.++-++. |.+   +..+.+..+          +....++|+++++++.+=  ..|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            66666656666666668999999865 432   233333332          777889999999887653  46999998


Q ss_pred             CCcceeeeee--c--CCCCceeEecCCCCcEEEEecCCCeEEEEEcccC-eeEEeecCC---------CcCEEEEEEcCC
Q 018784          216 NHFGLVKGYN--M--PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG-EQIGCNKGH---------HGPVHCVRFSPG  281 (350)
Q Consensus       216 ~~~~~~~~~~--~--~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~-~~~~~~~~h---------~~~v~~l~~sp~  281 (350)
                      ..+++.....  .  ...+.-+.|+|...-..++.-.+++|-+|..... ..+..++.+         ..+.-++..+||
T Consensus       175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d  254 (346)
T COG2706         175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD  254 (346)
T ss_pred             ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence            8655432211  1  1234456677653333556667999999998763 233332221         235678899999


Q ss_pred             CCEEEEecC-CCcEEEecCCC
Q 018784          282 GESYASGSE-DGTIRIWQTNP  301 (350)
Q Consensus       282 ~~~lasgs~-Dg~v~vw~~~~  301 (350)
                      |++|..+-. ...|.++.+++
T Consensus       255 GrFLYasNRg~dsI~~f~V~~  275 (346)
T COG2706         255 GRFLYASNRGHDSIAVFSVDP  275 (346)
T ss_pred             CCEEEEecCCCCeEEEEEEcC
Confidence            999876442 34777777654

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.90  E-value=4e-07  Score=75.42  Aligned_cols=218  Identities=13%  Similarity=0.085  Sum_probs=132.4

Q ss_pred             CCeEEEeeCCCCC--eeeeeeccccEeEEEEcC-----CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEe
Q 018784           82 DFTAKLWDALTGD--EKHSFEHKHIVRACAFSE-----DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL  154 (350)
Q Consensus        82 Dg~v~vWd~~~~~--~~~~~~h~~~V~~~~~~~-----~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~  154 (350)
                      -..|.+|+..+..  .+..      -..+.|.|     ...+||.||.-|...+|.+.+.+........+...|.-+.-.
T Consensus        51 t~sv~i~~~y~N~~~iv~~------y~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~  124 (344)
T KOG4532|consen   51 TISVPINSHYSNPKGIVEF------YTGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRY  124 (344)
T ss_pred             eeeeEeccccCCchhhEEe------eecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhh
Confidence            4456778775543  1111      13445544     345789999999999999886555444444444333222111


Q ss_pred             CCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEE-cCCcEEEEECCCcc--eeeeeecCC--
Q 018784          155 HSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFG--LVKGYNMPC--  228 (350)
Q Consensus       155 ~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~--~~~~~~~~~--  228 (350)
                      -....-+.-++.|.++++.++.-+.....+..+ -..+++.++++++++++- +...|.+|.+....  .++.+..+.  
T Consensus       125 cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D  204 (344)
T KOG4532|consen  125 CDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD  204 (344)
T ss_pred             cccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCC
Confidence            111222445678889999888654332222222 237889999999998765 44678888775432  333222221  


Q ss_pred             CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeE-E----eecCCCcCEEEEEEcCCCC--EEEEecCCCcEEEecCCC
Q 018784          229 NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI-G----CNKGHHGPVHCVRFSPGGE--SYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       229 ~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~-~----~~~~h~~~v~~l~~sp~~~--~lasgs~Dg~v~vw~~~~  301 (350)
                      .....++.. ....+|++.+||++.|||++.-... .    +-..|.+++..+.|+|.|.  +|.-.-.-+.+.+-|++.
T Consensus       205 ~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~  283 (344)
T KOG4532|consen  205 HGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN  283 (344)
T ss_pred             Cceeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence            122334443 4678999999999999999864322 1    1235889999999998764  344444556788888876


Q ss_pred             CCccc
Q 018784          302 PNHEE  306 (350)
Q Consensus       302 ~~~~~  306 (350)
                      ....+
T Consensus       284 ~~~~q  288 (344)
T KOG4532|consen  284 YVNHQ  288 (344)
T ss_pred             Cceee
Confidence            55443

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.89  E-value=4.5e-08  Score=80.50  Aligned_cols=143  Identities=13%  Similarity=0.049  Sum_probs=94.6

Q ss_pred             CccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEE-----EEECCCCcEEEEeeCCCeE------EEeeCCCCCeeee
Q 018784           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS-----CCLDANALFSASGSADFTA------KLWDALTGDEKHS   98 (350)
Q Consensus        30 dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~-----v~~~~~~~~l~s~s~Dg~v------~vWd~~~~~~~~~   98 (350)
                      .+.-++++..|+.+-+.+.+.   ...+. |+-++..     .+.-..+.++.+ +.=|++      +.|++...+....
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~---~~~~~-~~i~~~~~~~as~~~~~~~~~i~s-~~~g~~n~~d~~~a~~~~p~~t~~~  174 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDK---DLALM-SRIPSIHSGSASRKICRHGNSILS-GGCGNWNAQDNFYANTLDPIKTLIP  174 (319)
T ss_pred             cCCceEecCCCceEEEEechH---HHhhh-hhcccccccccccceeecccEEec-CCcceEeeccceeeecccccccccc
Confidence            356789999999999988665   21222 1111111     112223444333 233333      3444322111111


Q ss_pred             -eeccccEeEEEEcCC-CCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECC
Q 018784           99 -FEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR  176 (350)
Q Consensus        99 -~~h~~~V~~~~~~~~-~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~  176 (350)
                       ...-..|.+++-+|. .+++++|+.||.+.+||++....+......|+..++.+.|.|.++..+.+|++||.+..||..
T Consensus       175 ~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  175 SKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             cccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence             011234888888984 566778899999999999988888888889999999999999888889999999999999965


Q ss_pred             C
Q 018784          177 S  177 (350)
Q Consensus       177 ~  177 (350)
                      +
T Consensus       255 ~  255 (319)
T KOG4714|consen  255 T  255 (319)
T ss_pred             C
Confidence            3

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.88  E-value=6.3e-06  Score=69.26  Aligned_cols=218  Identities=16%  Similarity=0.136  Sum_probs=119.5

Q ss_pred             EEECCCCcEEEEeeCCCeEEEeeCCCC----Ceeeee--eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCC---
Q 018784           67 CCLDANALFSASGSADFTAKLWDALTG----DEKHSF--EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP---  137 (350)
Q Consensus        67 v~~~~~~~~l~s~s~Dg~v~vWd~~~~----~~~~~~--~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~---  137 (350)
                      ++.+.+|++||.- .|..|.|=.....    ..+..+  .....=+-++|+||+.+||.+...|+|++||+.....-   
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~   81 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP   81 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence            4556677766642 4555544322111    011111  11223467999999999999999999999998642211   


Q ss_pred             --CeeecCCCCcEEEEEEeCCC-----CcEEEEEeCCCeEEEEECCC-----CceeEeec----CCCCeEEEEEecCCcE
Q 018784          138 --PREVGNSSGSIRTVAWLHSD-----QTILSSCTDSGGVRLWDARS-----GKIVQTLE----TKSPVTSAEVSRDGRY  201 (350)
Q Consensus       138 --~~~~~~~~~~v~~~~~~~~~-----~~~~~s~~~dg~i~iwd~~~-----~~~~~~~~----~~~~v~~~~~~~~~~~  201 (350)
                        ....+.....|..+.|.+..     ...++.-..+|.++-+=+..     .+..+.+.    ....|.++.++|..++
T Consensus        82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L  161 (282)
T PF15492_consen   82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL  161 (282)
T ss_pred             cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE
Confidence              01112233456666666432     12333344567777665422     23334433    2467999999999877


Q ss_pred             EEEEc-C-C----------cEEEEECCCcceeeeeecCCCCceeEecCCCCcEE-EEecCCCe------EEEEEcccCee
Q 018784          202 ITTAD-G-S----------SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIF-IAGGEDMW------VHVFDFHTGEQ  262 (350)
Q Consensus       202 l~~~~-~-~----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~sg~~d~~------i~v~d~~~~~~  262 (350)
                      |..+. . .          .+..|-+-..                    .+.+. +....|+.      ..+|.+-+.+.
T Consensus       162 LlVgG~~~~~~~~s~a~~~GLtaWRiL~~--------------------~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~  221 (282)
T PF15492_consen  162 LLVGGCEQNQDGMSKASSCGLTAWRILSD--------------------SPYYKQVTSSEDDITASSKRRGLLRIPSFKF  221 (282)
T ss_pred             EEEeccCCCCCccccccccCceEEEEcCC--------------------CCcEEEccccCccccccccccceeeccceee
Confidence            65442 1 1          1222322111                    11111 11121211      12333332222


Q ss_pred             EEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784          263 IGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       263 ~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~  305 (350)
                      ..........|..|..||||.+||+...+|.|.+|+++.-...
T Consensus       222 fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~  264 (282)
T PF15492_consen  222 FSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ  264 (282)
T ss_pred             eeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence            2222234677999999999999999999999999998654443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=1.5e-07  Score=88.73  Aligned_cols=182  Identities=18%  Similarity=0.272  Sum_probs=133.0

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE   95 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~   95 (350)
                      .+.+++++++     +++++-|+.+|.+.+.+.. +.. ++.-.|+.+      ..+|.+++|+|.||+|.|-.+.+.+.
T Consensus        39 ~D~is~~av~-----~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~  105 (846)
T KOG2066|consen   39 NDAISCCAVH-----DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE  105 (846)
T ss_pred             hhHHHHHHhh-----cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc
Confidence            3456666664     5689999999999998853 333 444556655      67899999999999999999999988


Q ss_pred             eeeeeccccEeEEEEcCC-----CCeEEEeeCCCeEEEEECCC-CCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe
Q 018784           96 KHSFEHKHIVRACAFSED-----THLLLTGGFEKILRIFDLNR-PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (350)
Q Consensus        96 ~~~~~h~~~V~~~~~~~~-----~~~l~sg~~d~~v~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~  169 (350)
                      .+++.-..++.+++++|+     .+.+++||.-| +-++.-.- +...........|.|.++.|.   +.+++-+.++ .
T Consensus       106 ~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~lIAWand~-G  180 (846)
T KOG2066|consen  106 ITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GNLIAWANDD-G  180 (846)
T ss_pred             ceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec---CcEEEEecCC-C
Confidence            888888889999999998     56889999888 66664211 111122345567899999985   5567666665 5


Q ss_pred             EEEEECCCCceeEeecCCCC-------eEEEEEecCCcEEEEEcCCcEEEEECC
Q 018784          170 VRLWDARSGKIVQTLETKSP-------VTSAEVSRDGRYITTADGSSVKFWDAN  216 (350)
Q Consensus       170 i~iwd~~~~~~~~~~~~~~~-------v~~~~~~~~~~~l~~~~~~~i~vwd~~  216 (350)
                      |+++|+.+++.+..++.+.+       -..+.|.++.+ |+.|-+.+|++..++
T Consensus       181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK  233 (846)
T ss_pred             cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence            99999999988887765321       23456666544 455677788888776

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.85  E-value=2.1e-06  Score=73.29  Aligned_cols=213  Identities=18%  Similarity=0.097  Sum_probs=127.2

Q ss_pred             CCeEEEeeCCCCCeeeeeeccccEeEEE--EcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCc
Q 018784           82 DFTAKLWDALTGDEKHSFEHKHIVRACA--FSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (350)
Q Consensus        82 Dg~v~vWd~~~~~~~~~~~h~~~V~~~~--~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (350)
                      +|+|..||..+++.+.............  ..+++..+++++.++.+..||..+++.............. . .. .++.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~-~~-~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-P-VV-DGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-E-EE-ETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce-e-ee-cccc
Confidence            6889999999999888775422122111  2335667778889999999999776544332221110111 1 11 2344


Q ss_pred             EEEEEeCCCeEEEEECCCCceeEee-cCC----CCeEEEEEec-CCcEEEEEcCCcEEEEECCCcceeeeeecCCCCc--
Q 018784          160 ILSSCTDSGGVRLWDARSGKIVQTL-ETK----SPVTSAEVSR-DGRYITTADGSSVKFWDANHFGLVKGYNMPCNTE--  231 (350)
Q Consensus       160 ~~~s~~~dg~i~iwd~~~~~~~~~~-~~~----~~v~~~~~~~-~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~--  231 (350)
                      +++ +..++.|..+|+++|+.+... ...    .......... ++.+++...++.|..+|+++++.+..+.......  
T Consensus        79 v~v-~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~  157 (238)
T PF13360_consen   79 VYV-GTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS  157 (238)
T ss_dssp             EEE-EETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred             ccc-ccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence            443 446779999999999998884 322    1111222222 3345555568999999999999887776643221  


Q ss_pred             --------eeEecCCCCcEEEEecCCCe-EEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCC
Q 018784          232 --------SASLEPKLGNIFIAGGEDMW-VHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPP  302 (350)
Q Consensus       232 --------~~~~~~~~~~~l~sg~~d~~-i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~  302 (350)
                              ........+ .+..++.++. +.+ |+.+++.+-...  ...+..+ ..+.+..|+.++.++.|..||+.+.
T Consensus       158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG  232 (238)
T PF13360_consen  158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTG  232 (238)
T ss_dssp             -EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTT
T ss_pred             ceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCC
Confidence                    111112234 5555555554 556 999998653222  2223321 3456777777779999999998765


Q ss_pred             C
Q 018784          303 N  303 (350)
Q Consensus       303 ~  303 (350)
                      +
T Consensus       233 ~  233 (238)
T PF13360_consen  233 K  233 (238)
T ss_dssp             E
T ss_pred             C
Confidence            3

...

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.84  E-value=3e-08  Score=83.58  Aligned_cols=233  Identities=17%  Similarity=0.198  Sum_probs=137.9

Q ss_pred             cCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC-eee-----------------eeeccccEeEEEEcCCC--CeEEEe
Q 018784           61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKH-----------------SFEHKHIVRACAFSEDT--HLLLTG  120 (350)
Q Consensus        61 ~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~-~~~-----------------~~~h~~~V~~~~~~~~~--~~l~sg  120 (350)
                      ...|++|.|...|.++++|...|.|.++.-+... +..                 .+.-...|..+.|-.++  ..++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            3568899999999999999888999999854332 111                 11123457777775433  456667


Q ss_pred             eCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC--------ceeEeecCCCCeEE
Q 018784          121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG--------KIVQTLETKSPVTS  192 (350)
Q Consensus       121 ~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~--------~~~~~~~~~~~v~~  192 (350)
                      +.|++|++|.+................+    .+|-++.+...    ..+++=.+...        +.+..-.+.--+++
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~----~~~~~g~~~s~----~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS  177 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSF----HSPMGGPLTST----KELLLPRLSEHDEIIAAKPCRVYANAHPYHINS  177 (460)
T ss_pred             cCCceeeeeeeecccchhhhcccccccc----ccccCCCcCCH----HHhhcccccccceEEEeccceeccccceeEeee
Confidence            8899999999864432221111100000    01111111000    01111111110        11111113345889


Q ss_pred             EEEecCCcEEEEEcCCcEEEEECCCcc-ee-----eeeecC---CCCceeEecCCCCcEEEEecCCCeEEEEEcccCee-
Q 018784          193 AEVSRDGRYITTADGSSVKFWDANHFG-LV-----KGYNMP---CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ-  262 (350)
Q Consensus       193 ~~~~~~~~~l~~~~~~~i~vwd~~~~~-~~-----~~~~~~---~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~-  262 (350)
                      +.++.|...+.++++-.|.+|.+.-.. ..     +...+.   ....+..|+|..-.++...+.-|.|++-|++...+ 
T Consensus       178 iS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc  257 (460)
T COG5170         178 ISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC  257 (460)
T ss_pred             eeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence            999999999999999999999875422 11     111111   11234556666667888999999999999973221 


Q ss_pred             -----EEe----------ecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCC
Q 018784          263 -----IGC----------NKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPP  302 (350)
Q Consensus       263 -----~~~----------~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~  302 (350)
                           +..          +.+-...|..+.|+++|+++++-+. -+|+|||++-.
T Consensus       258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~  311 (460)
T COG5170         258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA  311 (460)
T ss_pred             cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence                 111          1223457889999999999987655 48999998643

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.84  E-value=9e-07  Score=73.34  Aligned_cols=199  Identities=13%  Similarity=0.047  Sum_probs=128.9

Q ss_pred             EEEecccCCC--ccEEEEEeCCCCeeEeeCCCCce-eeeccCccCCeEEE---EECCCCcEEEEeeCCCeEEEeeCCCCC
Q 018784           21 DLFYSPITPD--GFFLVSASKDSSPMLRNGETGDW-IGTFEGHKGAVWSC---CLDANALFSASGSADFTAKLWDALTGD   94 (350)
Q Consensus        21 ~~~~~~~s~d--g~~lasgs~d~~v~iw~~~~~~~-~~~l~gH~~~V~~v---~~~~~~~~l~s~s~Dg~v~vWd~~~~~   94 (350)
                      .+.|-|.+--  -.+||.|+.-|...+|...+.+. +....-|...|.-+   |-...  -+.-++.|.++++.++.-+.
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~--~~~i~sndht~k~~~~~~~s  149 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKF--PLNIASNDHTGKTMVVSGDS  149 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccccc--ceeeccCCcceeEEEEecCc
Confidence            4455553321  24889999999999999875443 33444455544322   22222  23345788898888876443


Q ss_pred             eeeeeeccc--cEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC-e-eecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784           95 EKHSFEHKH--IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP-R-EVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (350)
Q Consensus        95 ~~~~~~h~~--~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~-~-~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i  170 (350)
                      .... .|..  .+.++++++++.++++.+....|-.|.++...... . ........-.+..|+. ....++++..||++
T Consensus       150 ~~~~-~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~  227 (344)
T KOG4532|consen  150 NKFA-VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTC  227 (344)
T ss_pred             ccce-eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcE
Confidence            3222 2322  38899999999999999999999999886543222 1 2333344445566664 45567888999999


Q ss_pred             EEEECCCCc-eeEee-----cCCCCeEEEEEecCCc--EEEEE-cCCcEEEEECCCcceeee
Q 018784          171 RLWDARSGK-IVQTL-----ETKSPVTSAEVSRDGR--YITTA-DGSSVKFWDANHFGLVKG  223 (350)
Q Consensus       171 ~iwd~~~~~-~~~~~-----~~~~~v~~~~~~~~~~--~l~~~-~~~~i~vwd~~~~~~~~~  223 (350)
                      .|||+|.-. ++.+.     .+.+.+..+.|++.|.  +|.-+ .-+.+.+-|+|++...+.
T Consensus       228 ~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~  289 (344)
T KOG4532|consen  228 AIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV  289 (344)
T ss_pred             EEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence            999998753 32222     2456799999998663  33333 446899999998765443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.84  E-value=4.1e-06  Score=75.32  Aligned_cols=275  Identities=17%  Similarity=0.149  Sum_probs=167.6

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCe-----------
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFT-----------   84 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~-----------   84 (350)
                      .-|+..+.+||   -|++|++... .-|.+|....+..+..+. | ..|.-+.|+|.+.+|.|-+.-+.           
T Consensus        32 ~~p~~~~~~SP---~G~~l~~~~~-~~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~  105 (561)
T COG5354          32 NWPVAYVSESP---LGTYLFSEHA-AGVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT  105 (561)
T ss_pred             CcchhheeecC---cchheehhhc-cceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcc
Confidence            34566666665   8999987655 557999987766555554 2 66888999999999998765544           


Q ss_pred             ----EEEeeCCCCCeeeeeecccc---Ee-EEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecC-CCCcEEEEEEeC
Q 018784           85 ----AKLWDALTGDEKHSFEHKHI---VR-ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN-SSGSIRTVAWLH  155 (350)
Q Consensus        85 ----v~vWd~~~~~~~~~~~h~~~---V~-~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~  155 (350)
                          +.+||+.++..+..+.....   .+ -+.|+-+.+++|=- -...+.|+++. .......... ....+....++|
T Consensus       106 ~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t-~n~~~~p~~~lr~~gi~dFsisP  183 (561)
T COG5354         106 SKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEIT-DNIEEHPFKNLRPVGILDFSISP  183 (561)
T ss_pred             ccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecC-CccccCchhhccccceeeEEecC
Confidence                89999999987777653221   23 57888888776544 33468899862 2221111111 124566777776


Q ss_pred             CCC-cEEE-----EEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEE------c------CCcEEEEECC
Q 018784          156 SDQ-TILS-----SCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA------D------GSSVKFWDAN  216 (350)
Q Consensus       156 ~~~-~~~~-----s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~------~------~~~i~vwd~~  216 (350)
                      .++ ..++     ..+.+.++++|.+..++.+.+-.. ...-..+.|.+.|+++..-      +      ...+.+++++
T Consensus       184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~  263 (561)
T COG5354         184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT  263 (561)
T ss_pred             CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence            532 2222     235667899998876665444321 1222357788888765431      1      2356777776


Q ss_pred             CcceeeeeecCCCCceeEecCCCCcE-EEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCC---C
Q 018784          217 HFGLVKGYNMPCNTESASLEPKLGNI-FIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSED---G  292 (350)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~D---g  292 (350)
                      .....-............+.|...+. +++|..+..+.++|++.. ..  +...+.+=..+.|+|.+++++.++-|   |
T Consensus       264 e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~g  340 (561)
T COG5354         264 ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQG  340 (561)
T ss_pred             ccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eE--EecCCcccccccccCcccEEEEecCCcccc
Confidence            43322111222233345555544333 456678889999998765 32  22333444567788888888776655   5


Q ss_pred             cEEEecCCC
Q 018784          293 TIRIWQTNP  301 (350)
Q Consensus       293 ~v~vw~~~~  301 (350)
                      .|-+|+...
T Consensus       341 ni~i~~~~~  349 (561)
T COG5354         341 NIEIFDPAG  349 (561)
T ss_pred             ceEEeccCC
Confidence            677887543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=1.3e-06  Score=79.26  Aligned_cols=232  Identities=14%  Similarity=0.131  Sum_probs=143.9

Q ss_pred             EEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeC-----------CCeEEEEECCC
Q 018784           65 WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-----------EKILRIFDLNR  133 (350)
Q Consensus        65 ~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~-----------d~~v~vwd~~~  133 (350)
                      +-+.|||.|.+|+|- .-..|.+|--..-.....+.|++ |.-+.|||+.++|+|-+.           ...++|||+.+
T Consensus       214 tyv~wSP~GTYL~t~-Hk~GI~lWGG~~f~r~~RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t  291 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTF-HKQGIALWGGESFDRIQRFYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT  291 (698)
T ss_pred             eeEEecCCceEEEEE-eccceeeecCccHHHHHhccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence            347899999999985 45668999887777777788875 899999999999999653           26799999998


Q ss_pred             CCCCCeeec--CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec-CCCCeEEEEEecCCcEEEEE----c
Q 018784          134 PDAPPREVG--NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA----D  206 (350)
Q Consensus       134 ~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~----~  206 (350)
                      +........  .......-+.|++++..++-- .. .+|.|++..+..++-.-. ....|....|+|.+.+|+-=    +
T Consensus       292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm-~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~  369 (698)
T KOG2314|consen  292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARM-TG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN  369 (698)
T ss_pred             cchhcceeccCCCccccceEEeccCCceeEEe-cc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence            765433221  222223345788766544322 22 589999987644332211 13567888899988877632    1


Q ss_pred             C--CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEE----------ecCCCeEEEEEcccCeeEEeecCCCcCEE
Q 018784          207 G--SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA----------GGEDMWVHVFDFHTGEQIGCNKGHHGPVH  274 (350)
Q Consensus       207 ~--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s----------g~~d~~i~v~d~~~~~~~~~~~~h~~~v~  274 (350)
                      +  ..+.+..+.+.+.+++.++.....+...-...|.+|+.          .+.-..+.|+.++..+...........|.
T Consensus       370 ~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi  449 (698)
T KOG2314|consen  370 NIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVI  449 (698)
T ss_pred             CCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhee
Confidence            1  24666666666666655443221111122234555554          22223355566555443333334567889


Q ss_pred             EEEEcCCCCEEEEec-C--CCcEEEecCC
Q 018784          275 CVRFSPGGESYASGS-E--DGTIRIWQTN  300 (350)
Q Consensus       275 ~l~~sp~~~~lasgs-~--Dg~v~vw~~~  300 (350)
                      ..+|-|.|..++.-+ .  ..++.+|...
T Consensus       450 ~FaWEP~gdkF~vi~g~~~k~tvsfY~~e  478 (698)
T KOG2314|consen  450 AFAWEPHGDKFAVISGNTVKNTVSFYAVE  478 (698)
T ss_pred             eeeeccCCCeEEEEEccccccceeEEEee
Confidence            999999998776433 2  3467777654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.79  E-value=1.3e-07  Score=82.40  Aligned_cols=158  Identities=16%  Similarity=0.241  Sum_probs=98.6

Q ss_pred             EEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee--ecCCCCcEEEEEEeCCCCc--EEEEEeCCCeEEEEECCCCceeE
Q 018784          107 ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE--VGNSSGSIRTVAWLHSDQT--ILSSCTDSGGVRLWDARSGKIVQ  182 (350)
Q Consensus       107 ~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~--~~~s~~~dg~i~iwd~~~~~~~~  182 (350)
                      .+..++.++++|.+..+....+++........+.  .........++.+...+..  ++...++...+.+|....+.+..
T Consensus        67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~  146 (390)
T KOG3914|consen   67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP  146 (390)
T ss_pred             ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcch
Confidence            3445677788887777777666666432211111  1111222333444433333  33345566777788777677766


Q ss_pred             eecCCCCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceeeeeecCCC--CceeEecCCCCcEEEEecCCCeEEEEEccc
Q 018784          183 TLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCN--TESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (350)
Q Consensus       183 ~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~  259 (350)
                      .+.+-+-++.++++||++++.+++ |..||+-.....-.+.++-+...  ...+++.  .+..|++||.|+++++||+.+
T Consensus       147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~--~~~~LlS~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT--DNYLLLSGSGDKTLRLWDITS  224 (390)
T ss_pred             hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec--cCceeeecCCCCcEEEEeccc
Confidence            676777889999999999988775 77898866544434444433211  1222332  356789999999999999999


Q ss_pred             CeeEEee
Q 018784          260 GEQIGCN  266 (350)
Q Consensus       260 ~~~~~~~  266 (350)
                      |+++.++
T Consensus       225 gk~L~t~  231 (390)
T KOG3914|consen  225 GKLLDTC  231 (390)
T ss_pred             CCccccc
Confidence            9877543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.79  E-value=4.9e-06  Score=76.79  Aligned_cols=263  Identities=11%  Similarity=-0.003  Sum_probs=154.2

Q ss_pred             ccEEEEEeCCCCeeEeeCCCCceeeeccCcc--C--------CeE-EEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee
Q 018784           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHK--G--------AVW-SCCLDANALFSASGSADFTAKLWDALTGDEKHSF   99 (350)
Q Consensus        31 g~~lasgs~d~~v~iw~~~~~~~~~~l~gH~--~--------~V~-~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~   99 (350)
                      +..|..++.++.+.-+|.++|+.+...+-..  .        .+. .+..  ++..++.++.+|.+..+|..+++.+...
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~  146 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT  146 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence            3456667788899989999998776543211  0        000 0111  2334455678999999999999988876


Q ss_pred             eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCC----cEEEEEEeCCCCcEEEEEeCCCeEEEEEC
Q 018784          100 EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG----SIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (350)
Q Consensus       100 ~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~s~~~dg~i~iwd~  175 (350)
                      .-...+.+--.- .+..++.+..++.+..+|..+++...........    ...+....  ++. ++.+..++.+...|.
T Consensus       147 ~~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~~-v~~~~~~g~v~a~d~  222 (394)
T PRK11138        147 KVAGEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FGG-AIVGGDNGRVSAVLM  222 (394)
T ss_pred             cCCCceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CCE-EEEEcCCCEEEEEEc
Confidence            544433321111 2345667778899999998877654333211100    00011111  233 444567789999999


Q ss_pred             CCCceeEeecCCCC--------eEEEEEe---cCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEE
Q 018784          176 RSGKIVQTLETKSP--------VTSAEVS---RDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFI  244 (350)
Q Consensus       176 ~~~~~~~~~~~~~~--------v~~~~~~---~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (350)
                      .+|+.+.......+        ...+..+   .++.+++++.++.+..+|..+++.+......... ...   ..+..+.
T Consensus       223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-~~~---~~~~~vy  298 (394)
T PRK11138        223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVN-DFA---VDGGRIY  298 (394)
T ss_pred             cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCcc-CcE---EECCEEE
Confidence            99987665432111        0011111   2566666777889999999988776554432211 111   1245666


Q ss_pred             EecCCCeEEEEEcccCeeEEeecCCC-cCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784          245 AGGEDMWVHVFDFHTGEQIGCNKGHH-GPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       245 sg~~d~~i~v~d~~~~~~~~~~~~h~-~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~  305 (350)
                      .++.++.++.+|..+|+.+=....-. ....+...  .+..++.++.||.|.+.|..+.+..
T Consensus       299 ~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~  358 (394)
T PRK11138        299 LVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFV  358 (394)
T ss_pred             EEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence            77889999999999987653221111 11111122  2456778899999999988766544

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.78  E-value=3.6e-09  Score=100.16  Aligned_cols=197  Identities=20%  Similarity=0.271  Sum_probs=136.1

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEee--CCCeEEEee
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS--ADFTAKLWD   89 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s--~Dg~v~vWd   89 (350)
                      ++.|+..-+|++|+.   +-+.|+.|+..|.|+|+++.+|.......+|..+|+-+.-+.+|.++.+.+  ......+|+
T Consensus      1097 frd~~~~fTc~afs~---~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSG---GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred             hhccccceeeEEeec---CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence            478899999999986   667999999999999999999999999999999999998888887655433  334688999


Q ss_pred             CC-CCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecC---CCCcEEEEEEeCCCCcEEEEEe
Q 018784           90 AL-TGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN---SSGSIRTVAWLHSDQTILSSCT  165 (350)
Q Consensus        90 ~~-~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~s~~  165 (350)
                      .. ++..++++..   -.++.|+...+.-+.|.......+||+.+.......+..   ..-.-....|+|.+..++    
T Consensus      1174 ~~s~~~~~Hsf~e---d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---- 1246 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDE---DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---- 1246 (1516)
T ss_pred             cccccCccccccc---cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe----
Confidence            74 4455666544   356678776554455555567889999765433222211   111223455666555443    


Q ss_pred             CCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeee
Q 018784          166 DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY  224 (350)
Q Consensus       166 ~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~  224 (350)
                      +||  .+||+|..+.++.+..-+--..-.|+|.|.-++..+    .|||+|++++++..
T Consensus      1247 ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS----EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1247 NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS----EIWDMRTFKLLHSV 1299 (1516)
T ss_pred             eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec----hhhhhHHHHHHhcC
Confidence            454  479999887776665433223345889887665433    58999998876543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=1.3e-06  Score=76.30  Aligned_cols=253  Identities=15%  Similarity=0.134  Sum_probs=150.3

Q ss_pred             eeEeeCCCCceeeeccCccCCeEEEEECCCCc-EEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCC-CCeEEEe
Q 018784           43 PMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSED-THLLLTG  120 (350)
Q Consensus        43 v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~-~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~sg  120 (350)
                      ++..+..+.+.+.-+.+|...|+.++|+|... ++..++.+..|+|.|+++......+...+.+++|+|.-+ .++++.|
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG  254 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG  254 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence            44444444444556678888999999999877 788899999999999999988887776688999999764 5788899


Q ss_pred             eCCCeEEEEECCCCCCCCeeecC--CCCcEEEEEEeCCC-----CcEEEEEeCCCeEEEEECCCC----ceeEeecCCCC
Q 018784          121 GFEKILRIFDLNRPDAPPREVGN--SSGSIRTVAWLHSD-----QTILSSCTDSGGVRLWDARSG----KIVQTLETKSP  189 (350)
Q Consensus       121 ~~d~~v~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~-----~~~~~s~~~dg~i~iwd~~~~----~~~~~~~~~~~  189 (350)
                      -..|.|.+||+..++.+......  ...+|..++..++.     +.+++....  .+..|++.-.    -++..+..++.
T Consensus       255 l~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~  332 (463)
T KOG1645|consen  255 LQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGI  332 (463)
T ss_pred             ccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcc
Confidence            99999999999877655433322  23455565554432     223333332  3556665321    23334444556


Q ss_pred             eEEEEEecCCc-EEEEEcC----CcEEE----EECCCcceee----ee----ecCCCCceeEecCCCCcE-EEEecCCCe
Q 018784          190 VTSAEVSRDGR-YITTADG----SSVKF----WDANHFGLVK----GY----NMPCNTESASLEPKLGNI-FIAGGEDMW  251 (350)
Q Consensus       190 v~~~~~~~~~~-~l~~~~~----~~i~v----wd~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~-l~sg~~d~~  251 (350)
                      +.++...+-.+ ++++..-    -.++.    -|.+.+-.+-    ++    ..+.......+.+.+.++ +..|..-+.
T Consensus       333 cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~  412 (463)
T KOG1645|consen  333 CISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNE  412 (463)
T ss_pred             eeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcce
Confidence            66666655333 3333221    01111    1111111111    11    001111222333333344 445666678


Q ss_pred             EEEEEcccCeeEEeecCCCcCEEEEEEcC-CC-CEEEEecCCCcEEEecC
Q 018784          252 VHVFDFHTGEQIGCNKGHHGPVHCVRFSP-GG-ESYASGSEDGTIRIWQT  299 (350)
Q Consensus       252 i~v~d~~~~~~~~~~~~h~~~v~~l~~sp-~~-~~lasgs~Dg~v~vw~~  299 (350)
                      +.+||..+++.+.++.-. .+|..++... ++ .+|+. =.|..+.|+..
T Consensus       413 lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~-LTd~~v~Iyk~  460 (463)
T KOG1645|consen  413 LILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLAL-LTDDRVHIYKN  460 (463)
T ss_pred             eEEeccchhheeeecccC-cceeecceeecCCcchhhh-eecceEEEEec
Confidence            999999999888777533 6788777653 23 34543 34557777754

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=1.1e-06  Score=76.66  Aligned_cols=241  Identities=17%  Similarity=0.166  Sum_probs=139.6

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCC-CcEEEEeeCCCeEEEeeC
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDA   90 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~vWd~   90 (350)
                      +.+|...|.+++|+|...  .++..+|-+.+|+|.|+++..++.++..| ..+++++|+-+ ..++..|-..|.|-|+|+
T Consensus       189 lp~~g~~IrdlafSp~~~--GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~  265 (463)
T KOG1645|consen  189 LPGEGSFIRDLAFSPFNE--GLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM  265 (463)
T ss_pred             ccccchhhhhhccCcccc--ceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence            478999999999998432  37889999999999999999999999988 89999999865 467889999999999998


Q ss_pred             CCCCe-eeeee---ccccEeEEEE------cCCCCeEEEeeCCCeEEEEECCC--CCCCCeeecCCCCcEEEEEEeCCCC
Q 018784           91 LTGDE-KHSFE---HKHIVRACAF------SEDTHLLLTGGFEKILRIFDLNR--PDAPPREVGNSSGSIRTVAWLHSDQ  158 (350)
Q Consensus        91 ~~~~~-~~~~~---h~~~V~~~~~------~~~~~~l~sg~~d~~v~vwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~  158 (350)
                      ...+. +..+.   ...+|..++.      .+.+.+|+..+.+  +..|...-  ...+........+...++.+.+..+
T Consensus       266 R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~sn  343 (463)
T KOG1645|consen  266 RQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSN  343 (463)
T ss_pred             cCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccc
Confidence            54432 11111   1123333332      3345555544443  34554421  1222223233345566666665556


Q ss_pred             cEEEEEeCCC------eEEE-EECCCCceeEeecC---CCC------eEEEEEecCCcEEEEEc--CCcEEEEECCCcce
Q 018784          159 TILSSCTDSG------GVRL-WDARSGKIVQTLET---KSP------VTSAEVSRDGRYITTAD--GSSVKFWDANHFGL  220 (350)
Q Consensus       159 ~~~~s~~~dg------~i~i-wd~~~~~~~~~~~~---~~~------v~~~~~~~~~~~l~~~~--~~~i~vwd~~~~~~  220 (350)
                      .++++.-.+.      .|.. -|-+.|-++.....   .++      -..+.-.++..+++.-.  .+.+.+||..++..
T Consensus       344 h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ev  423 (463)
T KOG1645|consen  344 HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEV  423 (463)
T ss_pred             eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhe
Confidence            6666543210      1111 12223322221111   010      01111234456665443  36799999999998


Q ss_pred             eeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEc
Q 018784          221 VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (350)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~  257 (350)
                      ++++........+.....++.-++..=.|..+++|..
T Consensus       424 vQ~l~~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~  460 (463)
T KOG1645|consen  424 VQTLALSEPVLDICPNDTNGSSYLALLTDDRVHIYKN  460 (463)
T ss_pred             eeecccCcceeecceeecCCcchhhheecceEEEEec
Confidence            8887765433333322223333444445667777754

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.71  E-value=8.4e-05  Score=63.86  Aligned_cols=215  Identities=16%  Similarity=0.138  Sum_probs=132.6

Q ss_pred             EEEECC-CCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEc-CCCCeEEEeeCCCeEEEEECCCCCCCCeeec-
Q 018784           66 SCCLDA-NALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPREVG-  142 (350)
Q Consensus        66 ~v~~~~-~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~-~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~-  142 (350)
                      +.+|.+ ++.++++--..+.|..|+..++.... +.... ...+++. +++.+ +.+...+ +.++|+.+++....... 
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~g~l-~v~~~~~-~~~~d~~~g~~~~~~~~~   79 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPDGRL-YVADSGG-IAVVDPDTGKVTVLADLP   79 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTTSEE-EEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccCCEE-EEEEcCc-eEEEecCCCcEEEEeecc
Confidence            456776 77888887788999999987765433 33333 6777787 66554 4445444 45558776532221111 


Q ss_pred             --C-CCCcEEEEEEeCCCCcEEEEEeCC--------CeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE--cCCc
Q 018784          143 --N-SSGSIRTVAWLHSDQTILSSCTDS--------GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA--DGSS  209 (350)
Q Consensus       143 --~-~~~~v~~~~~~~~~~~~~~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~  209 (350)
                        . .......+++.++ +.+.++....        |.|..++.. ++.......-...+.++|+|+++.|..+  ..+.
T Consensus        80 ~~~~~~~~~ND~~vd~~-G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~  157 (246)
T PF08450_consen   80 DGGVPFNRPNDVAVDPD-GNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGR  157 (246)
T ss_dssp             TTCSCTEEEEEEEE-TT-S-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred             CCCcccCCCceEEEcCC-CCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccce
Confidence              1 3455677887654 5566665433        557778877 5544444444557889999999876543  3567


Q ss_pred             EEEEECCCcce----eeee-ecCCC---CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEc-C
Q 018784          210 VKFWDANHFGL----VKGY-NMPCN---TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFS-P  280 (350)
Q Consensus       210 i~vwd~~~~~~----~~~~-~~~~~---~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s-p  280 (350)
                      |..+++.....    .+.+ ..+..   +..+.+.. +++++++....+.|.++|.. |+.+..+......+++++|. |
T Consensus       158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~  235 (246)
T PF08450_consen  158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGP  235 (246)
T ss_dssp             EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEEST
T ss_pred             eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECC
Confidence            88888753221    1111 22222   23444544 58899988889999999987 88877776555589999994 5


Q ss_pred             CCC-EEEEe
Q 018784          281 GGE-SYASG  288 (350)
Q Consensus       281 ~~~-~lasg  288 (350)
                      +.. +++|.
T Consensus       236 ~~~~L~vTt  244 (246)
T PF08450_consen  236 DGKTLYVTT  244 (246)
T ss_dssp             TSSEEEEEE
T ss_pred             CCCEEEEEe
Confidence            644 44443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.69  E-value=1.8e-07  Score=87.33  Aligned_cols=146  Identities=18%  Similarity=0.254  Sum_probs=104.4

Q ss_pred             cceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC-ceeeeccCccCCeEEEEECC-CCcEEEEeeCCCe
Q 018784            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-DWIGTFEGHKGAVWSCCLDA-NALFSASGSADFT   84 (350)
Q Consensus         7 ~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~-~~~~~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~   84 (350)
                      ++-++++||+..|+++.|+|..||  .||+.+-|-.+..||..+. .++..+..-......|.|+- ++..+| .+....
T Consensus       105 aIef~lhghsraitd~n~~~q~pd--Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla-sshg~~  181 (1081)
T KOG0309|consen  105 AIEFVLHGHSRAITDINFNPQHPD--VLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA-SSHGND  181 (1081)
T ss_pred             ceEEEEecCccceeccccCCCCCc--ceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhh-hccCCc
Confidence            445678999999999999999998  9999999999999998654 44444443334445678874 455555 477889


Q ss_pred             EEEeeCCCCC-eeeee-eccccEeEEEEcCC-CCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeC
Q 018784           85 AKLWDALTGD-EKHSF-EHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLH  155 (350)
Q Consensus        85 v~vWd~~~~~-~~~~~-~h~~~V~~~~~~~~-~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  155 (350)
                      |++||...+. ++..+ .|...|+.++|..- -..+.+.+.|++|+.||.++.....+......-.++--.+.|
T Consensus       182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~P  255 (1081)
T KOG0309|consen  182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLP  255 (1081)
T ss_pred             eEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccc
Confidence            9999987664 45544 47778888888652 345788999999999998765444443333444454444444

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.68  E-value=9.7e-07  Score=72.83  Aligned_cols=183  Identities=15%  Similarity=0.158  Sum_probs=108.1

Q ss_pred             ccEEEEEeCCCCeeEeeCCCCc------------eeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeee
Q 018784           31 GFFLVSASKDSSPMLRNGETGD------------WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS   98 (350)
Q Consensus        31 g~~lasgs~d~~v~iw~~~~~~------------~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~   98 (350)
                      ...|+++-.++.+......++.            ..+.+..|+++-.+-+.+.-+.-++++..||.+.+.+...   ...
T Consensus        47 ~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~---~~~  123 (319)
T KOG4714|consen   47 EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDK---DLA  123 (319)
T ss_pred             hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechH---HHh
Confidence            4466666666655443333222            2334445555444444444567788999999999998654   111


Q ss_pred             eeccccEe-----EEEEcCCCCeEEEee-----CCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784           99 FEHKHIVR-----ACAFSEDTHLLLTGG-----FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (350)
Q Consensus        99 ~~h~~~V~-----~~~~~~~~~~l~sg~-----~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg  168 (350)
                      +.|+-.+.     +..+-..++.+.++.     .-+..+.|++...+........ ...|.+++-.|.++.+++.|++||
T Consensus       124 ~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg  202 (319)
T KOG4714|consen  124 LMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLVCCGTDDG  202 (319)
T ss_pred             hhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccc-cccchhhhCCcccccEEEEecCCC
Confidence            11221111     112222344444432     1234556666432222112122 223777776677888999999999


Q ss_pred             eEEEEECCCCceeEee-c-CCCCeEEEEEecC--CcEEEEEcCCcEEEEECCC
Q 018784          169 GVRLWDARSGKIVQTL-E-TKSPVTSAEVSRD--GRYITTADGSSVKFWDANH  217 (350)
Q Consensus       169 ~i~iwd~~~~~~~~~~-~-~~~~v~~~~~~~~--~~~l~~~~~~~i~vwd~~~  217 (350)
                      .+-+||.|+......+ . +..++..+.|+|.  .++++++.||.+-.||..+
T Consensus       203 ~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  203 IVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             eEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            9999999987433322 2 4578889999985  3678888999999999864

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.68  E-value=7.6e-06  Score=74.40  Aligned_cols=266  Identities=19%  Similarity=0.243  Sum_probs=150.5

Q ss_pred             cCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCC-----------CeEEEeeCCCCCe
Q 018784           27 ITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD-----------FTAKLWDALTGDE   95 (350)
Q Consensus        27 ~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D-----------g~v~vWd~~~~~~   95 (350)
                      +||-|.||+|=-.-| |.+|-.++...+..|- | ..|.-+.|||..++|+|-|.-           ..++|||+.+|..
T Consensus       218 wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~l  294 (698)
T KOG2314|consen  218 WSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLL  294 (698)
T ss_pred             ecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccch
Confidence            445899999876644 6899887766655554 4 456788999999999987543           6789999999987


Q ss_pred             eeeeec---cccEe-EEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe------
Q 018784           96 KHSFEH---KHIVR-ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT------  165 (350)
Q Consensus        96 ~~~~~h---~~~V~-~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~------  165 (350)
                      ...+.-   ...+. -..||.|++++|.-.. .+|.||+..+..+.-.... .-..|....|+|.+..++.-.-      
T Consensus       295 krsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ksl-ki~gIr~FswsP~~~llAYwtpe~~~~p  372 (698)
T KOG2314|consen  295 KRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSL-KISGIRDFSWSPTSNLLAYWTPETNNIP  372 (698)
T ss_pred             hcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeeccccc-CCccccCcccCCCcceEEEEcccccCCc
Confidence            776643   22233 3578999999986555 5788888654221110000 0111333333332211110000      


Q ss_pred             ---------CC---C--------------------------------------eEEEEECCCCc-eeEeecCCCCeEEEE
Q 018784          166 ---------DS---G--------------------------------------GVRLWDARSGK-IVQTLETKSPVTSAE  194 (350)
Q Consensus       166 ---------~d---g--------------------------------------~i~iwd~~~~~-~~~~~~~~~~v~~~~  194 (350)
                               .-   +                                      .+.|+.++... ++..+.....+...+
T Consensus       373 arvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~Fa  452 (698)
T KOG2314|consen  373 ARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFA  452 (698)
T ss_pred             ceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeee
Confidence                     00   0                                      11112211110 111112233456667


Q ss_pred             EecCCcEEEEE--c--CCcEEEEECCC----cceeeeeecCCCCceeEecCCCCcEEEEec---CCCeEEEEEcccCeeE
Q 018784          195 VSRDGRYITTA--D--GSSVKFWDANH----FGLVKGYNMPCNTESASLEPKLGNIFIAGG---EDMWVHVFDFHTGEQI  263 (350)
Q Consensus       195 ~~~~~~~l~~~--~--~~~i~vwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~---~d~~i~v~d~~~~~~~  263 (350)
                      |-|.|.-++.-  .  ..++++|...+    ..+++.+.- .....+.+.|. |+.++++.   ..+.+..+|+...+..
T Consensus       453 WEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPk-G~fvvva~l~s~~g~l~F~D~~~a~~k  530 (698)
T KOG2314|consen  453 WEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPK-GRFVVVAALVSRRGDLEFYDTDYADLK  530 (698)
T ss_pred             eccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCC-CcEEEEEEecccccceEEEecchhhhh
Confidence            88888765443  2  24688888763    223333322 22334555664 66555543   4788999998753333


Q ss_pred             EeecCCCcCEEEEEEcCCCCEEEEecC------CCcEEEecC
Q 018784          264 GCNKGHHGPVHCVRFSPGGESYASGSE------DGTIRIWQT  299 (350)
Q Consensus       264 ~~~~~h~~~v~~l~~sp~~~~lasgs~------Dg~v~vw~~  299 (350)
                      .+-..-....+.+.|-|.|+|+++++.      |.--+||+.
T Consensus       531 ~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tf  572 (698)
T KOG2314|consen  531 DTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTF  572 (698)
T ss_pred             hccCccccccccceECCCCCEEEEeeehhhhccccceEEEEe
Confidence            222222334678999999999999886      334456654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.67  E-value=1e-07  Score=81.47  Aligned_cols=153  Identities=17%  Similarity=0.199  Sum_probs=110.3

Q ss_pred             EEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCC-----CeeeeeeccccEeEEE
Q 018784           35 VSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG-----DEKHSFEHKHIVRACA  109 (350)
Q Consensus        35 asgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~-----~~~~~~~h~~~V~~~~  109 (350)
                      ++.+-+-.+-|-|.++|-.- .|. -++.|.++.|...+.++.-|...|.|.+.|+..+     .+.+.+-|...|+++.
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq  305 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQ  305 (425)
T ss_pred             ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhh
Confidence            44555566677777665332 233 4466888888888889999999999999998654     3566778999999998


Q ss_pred             EcC-CCCeEEEeeCCCeEEEEECCCCCC---CCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec
Q 018784          110 FSE-DTHLLLTGGFEKILRIFDLNRPDA---PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE  185 (350)
Q Consensus       110 ~~~-~~~~l~sg~~d~~v~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~  185 (350)
                      .-. ++++|++.+.+|+|++||+...+.   .....++....-.-.+..++.+..++++++|-..|||.++.|..+.++.
T Consensus       306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence            776 788999999999999999875433   2222222222222222334566778889999999999999999998887


Q ss_pred             CCCC
Q 018784          186 TKSP  189 (350)
Q Consensus       186 ~~~~  189 (350)
                      ....
T Consensus       386 f~~s  389 (425)
T KOG2695|consen  386 FPYS  389 (425)
T ss_pred             CCCc
Confidence            6543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.66  E-value=1.9e-05  Score=73.14  Aligned_cols=191  Identities=11%  Similarity=0.106  Sum_probs=112.1

Q ss_pred             ccEeEEEEcCCCCe-EEEeeC---CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC--CeEEEEECC
Q 018784          103 HIVRACAFSEDTHL-LLTGGF---EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS--GGVRLWDAR  176 (350)
Q Consensus       103 ~~V~~~~~~~~~~~-l~sg~~---d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d--g~i~iwd~~  176 (350)
                      +....-.|+|+|+. ++..+.   +..|.++|+.+++.  ..+....+......|+|++..++++.+.+  ..|.++|+.
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~  265 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN  265 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence            36678899999984 554333   35688888875433  22333455566778988777777665544  468888988


Q ss_pred             CCceeEeecCCCCeEEEEEecCCcEEEEEcC--C--cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCC---
Q 018784          177 SGKIVQTLETKSPVTSAEVSRDGRYITTADG--S--SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED---  249 (350)
Q Consensus       177 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d---  249 (350)
                      +++...............|+|||+.++-.++  +  .|.++|+.++...+-.. .... ...++|+ ++.++..+..   
T Consensus       266 ~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~-~~~~SPD-G~~Ia~~~~~~~~  342 (419)
T PRK04043        266 TKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN-NSSVSTY-KNYIVYSSRETNN  342 (419)
T ss_pred             CCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc-CceECCC-CCEEEEEEcCCCc
Confidence            7764332222222345679999986654332  2  68888887765433221 1111 2356654 5555444332   


Q ss_pred             ------CeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecC-CCc--EEEecCC
Q 018784          250 ------MWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSE-DGT--IRIWQTN  300 (350)
Q Consensus       250 ------~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~-Dg~--v~vw~~~  300 (350)
                            ..|.+.|+.+++.. .+... .......|+|||+.++-.+. .+.  +.+.+++
T Consensus       343 ~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~  400 (419)
T PRK04043        343 EFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN  400 (419)
T ss_pred             ccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence                  36888898877643 33322 22345889999998764443 333  4455543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=2.8e-05  Score=70.83  Aligned_cols=233  Identities=16%  Similarity=0.172  Sum_probs=138.9

Q ss_pred             cCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEe-----eCC-----CeEEEEE
Q 018784           61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG-----GFE-----KILRIFD  130 (350)
Q Consensus        61 ~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg-----~~d-----~~v~vwd  130 (350)
                      ...++..+++++|+++|- +.+..++|++..+...+.+.... .++.+.|+|-+++|.|-     ..+     -.+++|+
T Consensus        34 ~~~~~v~~~S~~G~lfA~-~~~~~v~i~~~~~~~~~lt~~~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~  111 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAY-SDNQVVKVFEIATLKVVLCVELK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN  111 (566)
T ss_pred             CCcceeEEEcCCCcEEEE-EcCCeEEEEEccCCcEEEEeccc-eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence            344667788999998775 67889999999888655555444 78999999999998762     222     3467999


Q ss_pred             CCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCC--cEEEEE---
Q 018784          131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDG--RYITTA---  205 (350)
Q Consensus       131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~---  205 (350)
                      +++. .....+......-++..|+.++...+-  --.+.+.+|++.+.+....--+...++...++|.+  ..+++-   
T Consensus       112 vet~-~~~s~~q~k~Q~~W~~qfs~dEsl~ar--lv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe  188 (566)
T KOG2315|consen  112 VETG-VQRSQIQKKMQNGWVPQFSIDESLAAR--LVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPE  188 (566)
T ss_pred             eccc-eehhheehhhhcCcccccccchhhhhh--hhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccC
Confidence            8873 322222211111146667654432211  12257999999876554444445678888888753  344432   


Q ss_pred             cC---CcEEEEECCCccee-----eeeecCCCCceeEecCCCCcEEEEecC-----------CCeEEEEEcccCeeEEee
Q 018784          206 DG---SSVKFWDANHFGLV-----KGYNMPCNTESASLEPKLGNIFIAGGE-----------DMWVHVFDFHTGEQIGCN  266 (350)
Q Consensus       206 ~~---~~i~vwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~sg~~-----------d~~i~v~d~~~~~~~~~~  266 (350)
                      .+   ..||+|-..-...-     +++ +........++.....+|+..+.           +.+++++++. |+....-
T Consensus       189 ~kGaPa~vri~~~~~~~~~~~~a~ksF-Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~  266 (566)
T KOG2315|consen  189 KKGAPASVRIYKYPEEGQHQPVANKSF-FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVP  266 (566)
T ss_pred             CCCCCcEEEEeccccccccchhhhccc-cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEe
Confidence            23   36899876411110     111 11122223333332334443332           3468888877 4333332


Q ss_pred             cCCCcCEEEEEEcCCCCEEEE--ecCCCcEEEecCC
Q 018784          267 KGHHGPVHCVRFSPGGESYAS--GSEDGTIRIWQTN  300 (350)
Q Consensus       267 ~~h~~~v~~l~~sp~~~~las--gs~Dg~v~vw~~~  300 (350)
                      -.-.++|+++.|+|+++-++.  |=--..+-|+|++
T Consensus       267 L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr  302 (566)
T KOG2315|consen  267 LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR  302 (566)
T ss_pred             cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC
Confidence            234789999999999976543  4456678888875

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.63  E-value=6.2e-05  Score=69.72  Aligned_cols=190  Identities=13%  Similarity=0.060  Sum_probs=111.5

Q ss_pred             CeEEEEECCCCcE-EEEeeC---CCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEE-eeC--CCeEEEEECCCCC
Q 018784           63 AVWSCCLDANALF-SASGSA---DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT-GGF--EKILRIFDLNRPD  135 (350)
Q Consensus        63 ~V~~v~~~~~~~~-l~s~s~---Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s-g~~--d~~v~vwd~~~~~  135 (350)
                      .+....|+|+++. ++-.+.   +..|.++|+.+++........+......|+|||+.++- .+.  +..|.++|+..+.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~  268 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT  268 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence            6677899999973 543333   45688889988876555555566667889999987654 333  3557777876543


Q ss_pred             CCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC--eEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE-cC-----
Q 018784          136 APPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DG-----  207 (350)
Q Consensus       136 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~-----  207 (350)
                      .  ..+..+.+......|+|++..++.+....+  .|.+.|+.+++..........  ...|+|+|++++.. ..     
T Consensus       269 ~--~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~  344 (419)
T PRK04043        269 L--TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEF  344 (419)
T ss_pred             E--EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCccc
Confidence            2  222223333345578888777777765444  577888887765332222111  24899999987543 21     


Q ss_pred             ----CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecC-CC--eEEEEEcc
Q 018784          208 ----SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE-DM--WVHVFDFH  258 (350)
Q Consensus       208 ----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-d~--~i~v~d~~  258 (350)
                          ..|.+.|+.+.... .++.........+.|+ ++.++..+. .+  .+.+.++.
T Consensus       345 ~~~~~~I~v~d~~~g~~~-~LT~~~~~~~p~~SPD-G~~I~f~~~~~~~~~L~~~~l~  400 (419)
T PRK04043        345 GKNTFNLYLISTNSDYIR-RLTANGVNQFPRFSSD-GGSIMFIKYLGNQSALGIIRLN  400 (419)
T ss_pred             CCCCcEEEEEECCCCCeE-ECCCCCCcCCeEECCC-CCEEEEEEccCCcEEEEEEecC
Confidence                25777887765432 2222222234556654 554444332 22  24445553

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.60  E-value=5e-05  Score=63.96  Aligned_cols=197  Identities=14%  Similarity=0.197  Sum_probs=122.2

Q ss_pred             CCccEEEEEeCCCCeeEeeCCCC--ceeeec---cCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee---
Q 018784           29 PDGFFLVSASKDSSPMLRNGETG--DWIGTF---EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE---  100 (350)
Q Consensus        29 ~dg~~lasgs~d~~v~iw~~~~~--~~~~~l---~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~---  100 (350)
                      .+|++||. -.|..|.|....+.  ..+...   +.-...=+-++|+||+.+||-+...|+|+++|+.. .....+.   
T Consensus         7 ~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~   84 (282)
T PF15492_consen    7 SDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAM   84 (282)
T ss_pred             CCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCccc
Confidence            48988875 67788888876542  122222   22223347889999999999999999999999864 3333332   


Q ss_pred             -----ccccEeEEEEcCC------CCeEEEeeCCCeEEEEECCCCCCC----C--e-eecCCCCcEEEEEEeCCCCcEEE
Q 018784          101 -----HKHIVRACAFSED------THLLLTGGFEKILRIFDLNRPDAP----P--R-EVGNSSGSIRTVAWLHSDQTILS  162 (350)
Q Consensus       101 -----h~~~V~~~~~~~~------~~~l~sg~~d~~v~vwd~~~~~~~----~--~-~~~~~~~~v~~~~~~~~~~~~~~  162 (350)
                           -...|..+.|-+.      ...|++-..+|.++-|-+..++..    .  . ........|.++.|.+..+.+++
T Consensus        85 ~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlV  164 (282)
T PF15492_consen   85 SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLV  164 (282)
T ss_pred             ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEE
Confidence                 2345667767432      235667778888888865321111    1  1 11223556888887765555555


Q ss_pred             EEeCCC----------eEEEEECCCCceeEe------------------------------ecCCCCeEEEEEecCCcEE
Q 018784          163 SCTDSG----------GVRLWDARSGKIVQT------------------------------LETKSPVTSAEVSRDGRYI  202 (350)
Q Consensus       163 s~~~dg----------~i~iwd~~~~~~~~~------------------------------~~~~~~v~~~~~~~~~~~l  202 (350)
                      +|....          -+..|.+-++.+-..                              .+....|..+.++|||++|
T Consensus       165 gG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~L  244 (282)
T PF15492_consen  165 GGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLL  244 (282)
T ss_pred             eccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEE
Confidence            543322          355665433221000                              0123468889999999998


Q ss_pred             EEE-cCCcEEEEECCCcceeeeeecC
Q 018784          203 TTA-DGSSVKFWDANHFGLVKGYNMP  227 (350)
Q Consensus       203 ~~~-~~~~i~vwd~~~~~~~~~~~~~  227 (350)
                      ++. ..|.|.+|++...++.+.....
T Consensus       245 a~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  245 ACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             EEEEcCCeEEEEecCcchhhcccchh
Confidence            765 5899999999887766655443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.60  E-value=2.1e-07  Score=79.55  Aligned_cols=150  Identities=21%  Similarity=0.262  Sum_probs=106.3

Q ss_pred             EEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCC---CCCeeecCCCCcEEEEEE
Q 018784           77 ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD---APPREVGNSSGSIRTVAW  153 (350)
Q Consensus        77 ~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~---~~~~~~~~~~~~v~~~~~  153 (350)
                      ++.|.+..|-+-|++++-.. .+.-++.|.++.|+..++++..|..+|.|.++|+....   .......-|...|+++..
T Consensus       228 fs~G~sqqv~L~nvetg~~q-sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~  306 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQ-SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQI  306 (425)
T ss_pred             ecccccceeEEEEeeccccc-ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhh
Confidence            66777888888888877543 33466779999999999999999999999999997542   122233446777888876


Q ss_pred             eCCCCcEEEEEeCCCeEEEEECCCCce---eEeecCCC---CeEEEEEec-CCcEEEEEcCCcEEEEECCCcceeeeeec
Q 018784          154 LHSDQTILSSCTDSGGVRLWDARSGKI---VQTLETKS---PVTSAEVSR-DGRYITTADGSSVKFWDANHFGLVKGYNM  226 (350)
Q Consensus       154 ~~~~~~~~~s~~~dg~i~iwd~~~~~~---~~~~~~~~---~v~~~~~~~-~~~~l~~~~~~~i~vwd~~~~~~~~~~~~  226 (350)
                      ...++..+.+.+.+|+|++||.|.-++   +.+...|.   .-.-+.+.+ +|.++++++|...|+|.++.+.+..+..+
T Consensus       307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence            663444555567889999999998776   66665542   111122344 44556677888999999998887776655


Q ss_pred             C
Q 018784          227 P  227 (350)
Q Consensus       227 ~  227 (350)
                      +
T Consensus       387 ~  387 (425)
T KOG2695|consen  387 P  387 (425)
T ss_pred             C
Confidence            4

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.56  E-value=3.7e-06  Score=80.58  Aligned_cols=181  Identities=17%  Similarity=0.264  Sum_probs=131.0

Q ss_pred             CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEE
Q 018784          113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTS  192 (350)
Q Consensus       113 ~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~  192 (350)
                      ++..++.|+-...+..+|+.+.......-.. .+.+.-+.   ..++++..|...|+|.+-|.++.+.++++..++... 
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~-a~~v~imR---~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~si-  220 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVS-ASGVTIMR---YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSI-  220 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeecc-CCceEEEE---ecCcEEEeecccceEEeecCCcCceeeeeeccccce-
Confidence            3456777888888888898764433222111 21244443   356778888888999999999999999999775432 


Q ss_pred             EEEecCCcEEEE-E---------cCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEc---cc
Q 018784          193 AEVSRDGRYITT-A---------DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDF---HT  259 (350)
Q Consensus       193 ~~~~~~~~~l~~-~---------~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~---~~  259 (350)
                      .+|+-.|++|++ +         -|.-|+|||+|..+.+..+.++..+..+.+.|.....+++.++-|...+-|.   .+
T Consensus       221 SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN  300 (1118)
T KOG1275|consen  221 SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN  300 (1118)
T ss_pred             eeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCC
Confidence            245555665544 3         1456899999998888777777777778888888888999999999999994   33


Q ss_pred             Ce-eEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          260 GE-QIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       260 ~~-~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      .. ...........+..+++|++++.||-|-.+|.|.+|.
T Consensus       301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            21 1222223344589999999999999999999999997

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=1e-06  Score=77.95  Aligned_cols=216  Identities=18%  Similarity=0.181  Sum_probs=139.8

Q ss_pred             ccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee----eeeccccEeEEEEcCCCCeEEEeeC-CCeEEEEECCCC
Q 018784           60 HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH----SFEHKHIVRACAFSEDTHLLLTGGF-EKILRIFDLNRP  134 (350)
Q Consensus        60 H~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~----~~~h~~~V~~~~~~~~~~~l~sg~~-d~~v~vwd~~~~  134 (350)
                      |.+.|+.+.. ....++.+++.||.++.|....-....    ...|...+.+++.+.++.++.|++. |..+|++|+++.
T Consensus         8 hrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            7777766554 346788999999999999865423222    2347778889999999999999888 999999999765


Q ss_pred             CCCCeeecCCCCcEEEEEEeCCCC----cEEEEEeCCCeEEEEECCCCce-eE-e-ecCCCCeEEEEEecCCcEEEEEc-
Q 018784          135 DAPPREVGNSSGSIRTVAWLHSDQ----TILSSCTDSGGVRLWDARSGKI-VQ-T-LETKSPVTSAEVSRDGRYITTAD-  206 (350)
Q Consensus       135 ~~~~~~~~~~~~~v~~~~~~~~~~----~~~~s~~~dg~i~iwd~~~~~~-~~-~-~~~~~~v~~~~~~~~~~~l~~~~-  206 (350)
                      ........  ..-...+.|....+    .+.++.-+++.+.++|-+..-+ .. . -.+-++|..+.+.+-+..+++.+ 
T Consensus        87 DminmiKL--~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~  164 (558)
T KOG0882|consen   87 DMINMIKL--VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI  164 (558)
T ss_pred             chhhhccc--ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence            54321111  01111233333333    5667777889999999765432 11 1 12457888888888887776665 


Q ss_pred             CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEE
Q 018784          207 GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYA  286 (350)
Q Consensus       207 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~la  286 (350)
                      .|-|..|....     .+..+...  .                    .|.+....-+..+.--.....++.|+|++..++
T Consensus       165 ~gmVEyWs~e~-----~~qfPr~~--l--------------------~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qis  217 (558)
T KOG0882|consen  165 SGMVEYWSAEG-----PFQFPRTN--L--------------------NFELKHETDLYGFPKAKTEPTSFEFSPDGAQIS  217 (558)
T ss_pred             cceeEeecCCC-----cccCcccc--c--------------------cccccccchhhcccccccCccceEEccccCccc
Confidence            67899998652     11111100  0                    122221111111222344568899999999999


Q ss_pred             EecCCCcEEEecCCCCCcc
Q 018784          287 SGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       287 sgs~Dg~v~vw~~~~~~~~  305 (350)
                      +-+.|..|++++....+..
T Consensus       218 tl~~DrkVR~F~~KtGklv  236 (558)
T KOG0882|consen  218 TLNPDRKVRGFVFKTGKLV  236 (558)
T ss_pred             ccCcccEEEEEEeccchhh
Confidence            9999999999998765544

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.54  E-value=3e-06  Score=79.13  Aligned_cols=228  Identities=13%  Similarity=0.136  Sum_probs=144.3

Q ss_pred             CCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe---------eee------e-eccccEeEEEEcCCCCeEEEeeCCCe
Q 018784           62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDE---------KHS------F-EHKHIVRACAFSEDTHLLLTGGFEKI  125 (350)
Q Consensus        62 ~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~---------~~~------~-~h~~~V~~~~~~~~~~~l~sg~~d~~  125 (350)
                      ....++.|.....++|.||.||.++|..+.+...         ...      + .|+..|.-+.|+.+.+.|-|...+|.
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl   94 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL   94 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence            3457899999999999999999999998754321         011      1 38999999999999999999999999


Q ss_pred             EEEEECCCCCCCCeee-cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEE-
Q 018784          126 LRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT-  203 (350)
Q Consensus       126 v~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-  203 (350)
                      |.+|-+-++....... ...+..|.+++|..++.++.+ ...||.|.+=.+...+....--.......+.|++|.+.+. 
T Consensus        95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcI-vYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf  173 (1189)
T KOG2041|consen   95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICI-VYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALF  173 (1189)
T ss_pred             EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEE-EEccCCEEEEeeccceecchhcchheccceeecccHHHHHh
Confidence            9999987654322211 123456889999876655544 4677877765554332211111112234677899877653 


Q ss_pred             EEcCCcEEEEECCCc-c------e-eeee----ecCCCCceeE-------ecCCCCcEEEEecCCCeEEEEEcc-cCeeE
Q 018784          204 TADGSSVKFWDANHF-G------L-VKGY----NMPCNTESAS-------LEPKLGNIFIAGGEDMWVHVFDFH-TGEQI  263 (350)
Q Consensus       204 ~~~~~~i~vwd~~~~-~------~-~~~~----~~~~~~~~~~-------~~~~~~~~l~sg~~d~~i~v~d~~-~~~~~  263 (350)
                      .-.++.+.+||.... .      + +...    +.+.....+.       ..+++...|+++...|.+.+-.-. +..++
T Consensus       174 ~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv  253 (1189)
T KOG2041|consen  174 KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV  253 (1189)
T ss_pred             hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe
Confidence            345678899986431 1      0 1100    0011111111       123456678888888887765432 22333


Q ss_pred             EeecCCCcCEEEEEEcCCCCEEEEecCCC
Q 018784          264 GCNKGHHGPVHCVRFSPGGESYASGSEDG  292 (350)
Q Consensus       264 ~~~~~h~~~v~~l~~sp~~~~lasgs~Dg  292 (350)
                      ..-.+  -.|..+.|+++|.+||.++.|.
T Consensus       254 v~dtg--m~~vgakWnh~G~vLAvcG~~~  280 (1189)
T KOG2041|consen  254 VVDTG--MKIVGAKWNHNGAVLAVCGNDS  280 (1189)
T ss_pred             EEecc--cEeecceecCCCcEEEEccCcc
Confidence            22222  3578899999999999988763

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.53  E-value=2.9e-05  Score=73.42  Aligned_cols=204  Identities=15%  Similarity=0.181  Sum_probs=130.6

Q ss_pred             eccCCceeEEEecc-------cCCC--ccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECC---CC-cEEEEe
Q 018784           13 HGHSRPVVDLFYSP-------ITPD--GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA---NA-LFSASG   79 (350)
Q Consensus        13 ~gH~~~v~~~~~~~-------~s~d--g~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~---~~-~~l~s~   79 (350)
                      --|...|..|.|.|       .+|.  --++|++.-.|.|.+||...+.....|+.|.++|.-++|-+   +. .+|+.-
T Consensus        52 e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaI  131 (1062)
T KOG1912|consen   52 ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAI  131 (1062)
T ss_pred             ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEe
Confidence            45888999999866       2322  23667888889999999998888888999999999888843   34 456666


Q ss_pred             eCCCeEEEeeCCCCCeeeeeecc-ccEeEEEEcC-CCCeEEEeeCCCeEEEEECCC---CCCCCee--e-cCCCC-----
Q 018784           80 SADFTAKLWDALTGDEKHSFEHK-HIVRACAFSE-DTHLLLTGGFEKILRIFDLNR---PDAPPRE--V-GNSSG-----  146 (350)
Q Consensus        80 s~Dg~v~vWd~~~~~~~~~~~h~-~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~---~~~~~~~--~-~~~~~-----  146 (350)
                      ..-.++.+|+..+|.....+.-. ....|+.+.| +...+..-+..|.+.+-+.-.   +..+.+.  + ..|..     
T Consensus       132 h~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~le  211 (1062)
T KOG1912|consen  132 HGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLE  211 (1062)
T ss_pred             cCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhh
Confidence            66789999999999887766433 3345578887 445555555566666665421   1111111  1 11110     


Q ss_pred             -------c-------------EEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCc--EE-
Q 018784          147 -------S-------------IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGR--YI-  202 (350)
Q Consensus       147 -------~-------------v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~--~l-  202 (350)
                             .             ...++|+|.-.+++... ..+.+.++|++-..++....- .+.+.-+.+-|+++  .| 
T Consensus       212 re~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~-~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lf  290 (1062)
T KOG1912|consen  212 RETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALF  290 (1062)
T ss_pred             hhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE-eccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEE
Confidence                   0             01124455444444433 346899999988777766654 34556677777654  34 


Q ss_pred             EEEcCCcEEEEECCC
Q 018784          203 TTADGSSVKFWDANH  217 (350)
Q Consensus       203 ~~~~~~~i~vwd~~~  217 (350)
                      +.-.+|.+.+|--+.
T Consensus       291 clH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  291 CLHSNGRLTIRVRKE  305 (1062)
T ss_pred             EEecCCeEEEEEeec
Confidence            445688888886544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.50  E-value=0.00013  Score=73.91  Aligned_cols=276  Identities=15%  Similarity=0.148  Sum_probs=152.6

Q ss_pred             ceeEEEecccCCCccEEEEEeCCC--CeeEeeCCCC---ceeeecc-----CccCCeEEEEECCCCcEEEEeeCCCeEEE
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDS--SPMLRNGETG---DWIGTFE-----GHKGAVWSCCLDANALFSASGSADFTAKL   87 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~--~v~iw~~~~~---~~~~~l~-----gH~~~V~~v~~~~~~~~l~s~s~Dg~v~v   87 (350)
                      .+...+|.+. .|.-+++.++...  .+.+......   +.+..+.     ...+.|.++.+-++...++-+..+|.|.+
T Consensus        23 ~~~~~~~d~~-sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~  101 (928)
T PF04762_consen   23 PITATAFDSD-SDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL  101 (928)
T ss_pred             ccceEEEecC-CCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence            5666777652 2445566665555  2344332221   2333443     23467888888888888888889999999


Q ss_pred             e----eCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee----ecCCCCcEEEEEEeCCCCc
Q 018784           88 W----DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE----VGNSSGSIRTVAWLHSDQT  159 (350)
Q Consensus        88 W----d~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~  159 (350)
                      .    +..+......-.-...|.+++||||..+|+....++++-+..-. .+.....    .........++.|-.....
T Consensus       102 ~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQ  180 (928)
T PF04762_consen  102 VREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQ  180 (928)
T ss_pred             EEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCc
Confidence            9    65554433333456789999999999999999888888776421 1111100    0011122334444322111


Q ss_pred             EEEEEeCCCeEEEEECCCC-ceeEeecCCCCeEEEEEecCCcEEEEEc-----C--CcEEEEECCCcceeeeeecC--CC
Q 018784          160 ILSSCTDSGGVRLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITTAD-----G--SSVKFWDANHFGLVKGYNMP--CN  229 (350)
Q Consensus       160 ~~~s~~~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~--~~i~vwd~~~~~~~~~~~~~--~~  229 (350)
                      +=-+++.--.=.+=|.... .....+.....-..++|-.||.|++++.     +  +.+|||+-. +. +....-+  ..
T Consensus       181 F~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~-L~stSE~v~gL  258 (928)
T PF04762_consen  181 FHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE-LQSTSEPVDGL  258 (928)
T ss_pred             cCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce-EEeccccCCCc
Confidence            1000000000000010000 0001111223456789999999987652     3  579999865 22 2221112  22


Q ss_pred             CceeEecCCCCcEEEEecC---CCeEEEEEcccCeeEEee--c--CCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          230 TESASLEPKLGNIFIAGGE---DMWVHVFDFHTGEQIGCN--K--GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       230 ~~~~~~~~~~~~~l~sg~~---d~~i~v~d~~~~~~~~~~--~--~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      ...+++.| .|+++++...   ...|.+|. ++|-....+  .  .....|..|.|++++..||.--.|. |.+|...
T Consensus       259 e~~l~WrP-sG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~  333 (928)
T PF04762_consen  259 EGALSWRP-SGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS  333 (928)
T ss_pred             cCCccCCC-CCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEee
Confidence            34556666 4777776554   23455554 344433322  2  3456799999999999999877665 9999754

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.46  E-value=0.00046  Score=59.80  Aligned_cols=222  Identities=18%  Similarity=0.133  Sum_probs=133.6

Q ss_pred             EEEECC-CCcEEEEeeCCCe-EEEeeCCCCCeeeeeeccc---cEeEEEEcCCCCeEEEee-----CCCeEEEEECCCCC
Q 018784           66 SCCLDA-NALFSASGSADFT-AKLWDALTGDEKHSFEHKH---IVRACAFSEDTHLLLTGG-----FEKILRIFDLNRPD  135 (350)
Q Consensus        66 ~v~~~~-~~~~l~s~s~Dg~-v~vWd~~~~~~~~~~~h~~---~V~~~~~~~~~~~l~sg~-----~d~~v~vwd~~~~~  135 (350)
                      .++.+| ++..++-+-.-|+ ..+||..+++....+.-..   .--.-.|+++|++|++.-     ..|.|-|||.....
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~   88 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY   88 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence            456666 5566666766665 5678988888766553211   122457999999999863     45889999998443


Q ss_pred             CCCeeecCCCCcEEEEEEeCCCCcEEEEE-----------------eCCCeEEEEECCCCceeEeec-----CCCCeEEE
Q 018784          136 APPREVGNSSGSIRTVAWLHSDQTILSSC-----------------TDSGGVRLWDARSGKIVQTLE-----TKSPVTSA  193 (350)
Q Consensus       136 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~-----------------~~dg~i~iwd~~~~~~~~~~~-----~~~~v~~~  193 (350)
                      ....+...+.--...+.+.+++..+++..                 ..+-.+-+-|.++|+.+.+..     ++.++..+
T Consensus        89 ~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHL  168 (305)
T PF07433_consen   89 RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHL  168 (305)
T ss_pred             EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeE
Confidence            33333333333334555665554554442                 234467777888888776643     23578999


Q ss_pred             EEecCCcEEEEEcC-C-------cEEEEECCCcceeeeeecC--------CCCceeEecCCCCcEEEEecCCCeEEEEEc
Q 018784          194 EVSRDGRYITTADG-S-------SVKFWDANHFGLVKGYNMP--------CNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (350)
Q Consensus       194 ~~~~~~~~l~~~~~-~-------~i~vwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~  257 (350)
                      ++.++|..+.+... +       -+-+++...  .+..+..+        ...-++.+....+.+.+++-..+.+.+||.
T Consensus       169 a~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~  246 (305)
T PF07433_consen  169 AVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA  246 (305)
T ss_pred             EecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC
Confidence            99999987766421 1       133443322  12222221        223345555443345566667889999999


Q ss_pred             ccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCC
Q 018784          258 HTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG  292 (350)
Q Consensus       258 ~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg  292 (350)
                      .+++.+....-.  -+..++-.+++ +++|.+.-.
T Consensus       247 ~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG~G~  278 (305)
T PF07433_consen  247 ATGRLLGSVPLP--DACGVAPTDDG-FLVSSGQGQ  278 (305)
T ss_pred             CCCCEeeccccC--ceeeeeecCCc-eEEeCCCcc
Confidence            999987544322  25667776666 777766544

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.44  E-value=0.00081  Score=57.73  Aligned_cols=207  Identities=13%  Similarity=0.117  Sum_probs=129.8

Q ss_pred             CccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEEC-CCCcEEEEeeCCCeEEEeeCCCCCeeeeee------cc
Q 018784           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLD-ANALFSASGSADFTAKLWDALTGDEKHSFE------HK  102 (350)
Q Consensus        30 dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~-~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~------h~  102 (350)
                      ++.++.+--..+.|..|+..+++... +....  ...+++. +++.++++. . +.+.++|..+++......      ..
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~-~-~~~~~~d~~~g~~~~~~~~~~~~~~~   85 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVAD-S-GGIAVVDPDTGKVTVLADLPDGGVPF   85 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEE-T-TCEEEEETTTTEEEEEEEEETTCSCT
T ss_pred             CCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEE-c-CceEEEecCCCcEEEEeeccCCCccc
Confidence            67888888888999999988876643 22211  5566776 677776654 3 444555988875444332      23


Q ss_pred             ccEeEEEEcCCCCeEEEeeCC--------CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 018784          103 HIVRACAFSEDTHLLLTGGFE--------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD  174 (350)
Q Consensus       103 ~~V~~~~~~~~~~~l~sg~~d--------~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd  174 (350)
                      ...+.+++.|+|.+.++....        +.|..++.. .+  .......-.....++|++++..++++-+..+.|..++
T Consensus        86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~  162 (246)
T PF08450_consen   86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFD  162 (246)
T ss_dssp             EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEE
T ss_pred             CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce--EEEEecCcccccceEECCcchheeecccccceeEEEe
Confidence            457899999999977765543        446666654 22  2222223445678999987777888888888999998


Q ss_pred             CCCC-c------eeEeecCC-CCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecC-CCCceeEecC-CCCcEE
Q 018784          175 ARSG-K------IVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMP-CNTESASLEP-KLGNIF  243 (350)
Q Consensus       175 ~~~~-~------~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~l  243 (350)
                      +... .      .+..+... .....+++..+|++.++. ..+.|.++|.. ++.+..+..+ ..+..+.|-. ....++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~  241 (246)
T PF08450_consen  163 LDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLY  241 (246)
T ss_dssp             EETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred             ccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEE
Confidence            8532 2      12222222 236789999999887765 56789999988 7777777777 3344455532 223444


Q ss_pred             EE
Q 018784          244 IA  245 (350)
Q Consensus       244 ~s  245 (350)
                      ++
T Consensus       242 vT  243 (246)
T PF08450_consen  242 VT  243 (246)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.43  E-value=3.1e-07  Score=87.44  Aligned_cols=198  Identities=18%  Similarity=0.202  Sum_probs=131.8

Q ss_pred             CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeC-CC-eEE
Q 018784           51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGF-EK-ILR  127 (350)
Q Consensus        51 ~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~-d~-~v~  127 (350)
                      .+..++|..|...-+|++|+.+..+|+.|+.-|.|+++++.+|.....+ .|...|+-+.-+.+|..+++.+. .. -..
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence            3445678889999999999999999999999999999999999866655 59999999998889987766543 33 467


Q ss_pred             EEECCCCCCCCeeecCCCCcEEEEEEeCCCC-cEEEEEeCCCeEEEEECCCCceeEeecC-----CCCeEEEEEecCCcE
Q 018784          128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ-TILSSCTDSGGVRLWDARSGKIVQTLET-----KSPVTSAEVSRDGRY  201 (350)
Q Consensus       128 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~  201 (350)
                      +|++.....+.    +.-..-.++.|+...+ +.+-++.  ....+||+.++..+.++-.     ...-+...|+|+.++
T Consensus      1171 LW~~~s~~~~~----Hsf~ed~~vkFsn~~q~r~~gt~~--d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1171 LWDASSTGGPR----HSFDEDKAVKFSNSLQFRALGTEA--DDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred             HhccccccCcc----ccccccceeehhhhHHHHHhcccc--cceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence            99986532221    1122234566664433 3333433  3689999999877666322     122355678998877


Q ss_pred             EEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEE
Q 018784          202 ITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG  264 (350)
Q Consensus       202 l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~  264 (350)
                      +.  .||  .+||.|...-++.+..-.....-.|+|. |..++..+     .|||+++.++++
T Consensus      1245 Il--ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~-g~eVIINS-----EIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1245 IL--NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPS-GNEVIINS-----EIWDMRTFKLLH 1297 (1516)
T ss_pred             Ee--eCc--eeeeeccHHHHhhhhhheecccccccCC-CceEEeec-----hhhhhHHHHHHh
Confidence            64  233  5799988766655433222233345553 44444443     489998877654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.39  E-value=0.00016  Score=69.43  Aligned_cols=194  Identities=15%  Similarity=0.138  Sum_probs=126.6

Q ss_pred             CCccEEEEEeCCCCeeEeeCCCCceeeeccCccCC-eEEEEECCCCcEEEEeeCCC-----eEEEeeCCCC---C---ee
Q 018784           29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGA-VWSCCLDANALFSASGSADF-----TAKLWDALTG---D---EK   96 (350)
Q Consensus        29 ~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~-V~~v~~~~~~~~l~s~s~Dg-----~v~vWd~~~~---~---~~   96 (350)
                      +.+..+|-|+.||.|.+.+ ...+.++.+..|..+ |..+-...+-.+|++-+.|+     .++||+++..   .   +.
T Consensus        33 s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~  111 (933)
T KOG2114|consen   33 SSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCL  111 (933)
T ss_pred             CCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCccee
Confidence            4677899999999998876 344555788888877 44333334446888877774     5999998533   1   22


Q ss_pred             ---eeeec-----cccEeEEEEcCCCCeEEEeeCCCeEEEEECC---CCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe
Q 018784           97 ---HSFEH-----KHIVRACAFSEDTHLLLTGGFEKILRIFDLN---RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (350)
Q Consensus        97 ---~~~~h-----~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~  165 (350)
                         ..+.+     +.++.+++.+.+-+.+|+|-.+|.|..+.-+   ..............+|+.+++..+....+..+.
T Consensus       112 ~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~T  191 (933)
T KOG2114|consen  112 YEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVAT  191 (933)
T ss_pred             eeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEe
Confidence               11222     3457889999999999999999999998532   112223344456788999998876666333333


Q ss_pred             CCCeEEEEECCCCcee-EeecCC-CCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeee
Q 018784          166 DSGGVRLWDARSGKIV-QTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY  224 (350)
Q Consensus       166 ~dg~i~iwd~~~~~~~-~~~~~~-~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~  224 (350)
                      . ..|.+|.+....+. ..+..+ .+.++..+++....+.++.+.-+.+||....++-..+
T Consensus       192 t-~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf  251 (933)
T KOG2114|consen  192 T-EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAF  251 (933)
T ss_pred             c-ceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeee
Confidence            3 47999998733322 224433 4566666666555466666678999998755544333

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.31  E-value=0.00045  Score=65.57  Aligned_cols=231  Identities=14%  Similarity=0.098  Sum_probs=132.9

Q ss_pred             cEEEEEeCCCCeeEeeCCCCceeeeccCccCC-----eE-EEEECCCCcEEEEe--------eCCCeEEEeeCCCCCeee
Q 018784           32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGA-----VW-SCCLDANALFSASG--------SADFTAKLWDALTGDEKH   97 (350)
Q Consensus        32 ~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~-----V~-~v~~~~~~~~l~s~--------s~Dg~v~vWd~~~~~~~~   97 (350)
                      ..+..++.|+.+.-+|.++|+.+..++.....     +. +..+. ++.+++..        +.+|.+...|..+++.+.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W  189 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW  189 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence            56777888999999999999988765432210     11 11111 23443322        246889999999999887


Q ss_pred             eeecc-c--------------------cE-eEEEEcCCCCeEEEeeCCC------------------eEEEEECCCCCCC
Q 018784           98 SFEHK-H--------------------IV-RACAFSEDTHLLLTGGFEK------------------ILRIFDLNRPDAP  137 (350)
Q Consensus        98 ~~~h~-~--------------------~V-~~~~~~~~~~~l~sg~~d~------------------~v~vwd~~~~~~~  137 (350)
                      .+... .                    .| .+.++.+.+..++.++.++                  .+.-+|+.+++..
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~  269 (488)
T cd00216         190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK  269 (488)
T ss_pred             EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence            76421 1                    01 1233444556677776554                  6777787776654


Q ss_pred             Ceeec-CCCCc---E-EEEEEe---CCCC---cEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEE--
Q 018784          138 PREVG-NSSGS---I-RTVAWL---HSDQ---TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT--  204 (350)
Q Consensus       138 ~~~~~-~~~~~---v-~~~~~~---~~~~---~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--  204 (350)
                      ..... .+...   . ......   .-++   .+++.++.+|.+...|.++|+.+.......  ..+..+| +.+++.  
T Consensus       270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~-~~vyv~~~  346 (488)
T cd00216         270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--QPMAYDP-GLVYLGAF  346 (488)
T ss_pred             EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--cccccCC-ceEEEccc
Confidence            43221 11100   0 000000   0111   256677788999999999999887654320  1122233 222221  


Q ss_pred             ----------------EcCCcEEEEECCCcceeeeeecCCC---------CceeEecCCCCcEEEEecCCCeEEEEEccc
Q 018784          205 ----------------ADGSSVKFWDANHFGLVKGYNMPCN---------TESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (350)
Q Consensus       205 ----------------~~~~~i~vwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~  259 (350)
                                      ..++.+.-.|+.+++.+-.+.....         ....... ..+.++.+++.|+.|+.+|..+
T Consensus       347 ~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~-~~g~~v~~g~~dG~l~ald~~t  425 (488)
T cd00216         347 HIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA-TAGNLVFAGAADGYFRAFDATT  425 (488)
T ss_pred             cccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE-ecCCeEEEECCCCeEEEEECCC
Confidence                            1245677788888777666554311         0000111 1357888889999999999999


Q ss_pred             CeeEEeec
Q 018784          260 GEQIGCNK  267 (350)
Q Consensus       260 ~~~~~~~~  267 (350)
                      |+.+-...
T Consensus       426 G~~lW~~~  433 (488)
T cd00216         426 GKELWKFR  433 (488)
T ss_pred             CceeeEEE
Confidence            99876554

The alignment model contains an 8-bladed beta-propeller.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.30  E-value=0.00029  Score=70.09  Aligned_cols=231  Identities=18%  Similarity=0.168  Sum_probs=136.1

Q ss_pred             CCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCC----CC
Q 018784           62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD----AP  137 (350)
Q Consensus        62 ~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~----~~  137 (350)
                      ..|.++.|..+...++-+..+|.|.+-|.++......-.-.+.|.+++|+||.+.++.....+++.+-+- +..    .+
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E~~  147 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAEKP  147 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhccc
Confidence            6788999988888888888999999999887765544456678999999999999998888888766432 111    01


Q ss_pred             CeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC-ceeEeecCCCCeEEEEEecCCcEEEEE-----cC-CcE
Q 018784          138 PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITTA-----DG-SSV  210 (350)
Q Consensus       138 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~-~~i  210 (350)
                      ........+....+.|-.....+=.++   |....-+.... +..........-++++|.-||++++++     .+ +.|
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~---gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki  224 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSE---GRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI  224 (1265)
T ss_pred             cccccccccccceecccccceeeecch---hhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence            111111122333444432211111111   11211111110 111111223344578999999998874     45 789


Q ss_pred             EEEECCCcceeeeeecC--CCCceeEecCCCCcEEEEec---CCCeEEEEEcccCeeEE----eecCCCcCEEEEEEcCC
Q 018784          211 KFWDANHFGLVKGYNMP--CNTESASLEPKLGNIFIAGG---EDMWVHVFDFHTGEQIG----CNKGHHGPVHCVRFSPG  281 (350)
Q Consensus       211 ~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~sg~---~d~~i~v~d~~~~~~~~----~~~~h~~~v~~l~~sp~  281 (350)
                      ++||-. +. .+...-+  ......++.| .|.++++-.   +|+.|.+|.- +|-...    ........|..++|+.+
T Consensus       225 rV~drE-g~-Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~  300 (1265)
T KOG1920|consen  225 RVYDRE-GA-LNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSN  300 (1265)
T ss_pred             EEeccc-ch-hhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCC
Confidence            999976 22 2211111  2234556666 466666543   4567888863 232221    22223445899999999


Q ss_pred             CCEEEE---ecCCCcEEEecCC
Q 018784          282 GESYAS---GSEDGTIRIWQTN  300 (350)
Q Consensus       282 ~~~las---gs~Dg~v~vw~~~  300 (350)
                      +..||.   ......|++|.+.
T Consensus       301 sdiLAv~~~~~e~~~v~lwt~~  322 (1265)
T KOG1920|consen  301 SDILAVVTSNLENSLVQLWTTG  322 (1265)
T ss_pred             CCceeeeecccccceEEEEEec
Confidence            999886   5556669999764

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.29  E-value=0.00031  Score=63.12  Aligned_cols=116  Identities=10%  Similarity=0.103  Sum_probs=90.9

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCC-CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDS-SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~-~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~   92 (350)
                      ||...|.-..+   +.++.-++.|..|| .+-|+|..+++.. .+++.-+.|.++..+++|++++.+-....+.+.|+.+
T Consensus       357 ~~~~~VrY~r~---~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn  432 (668)
T COG4946         357 GKKGGVRYRRI---QVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN  432 (668)
T ss_pred             CCCCceEEEEE---ccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC
Confidence            67777655544   44777788999999 7999998888764 5666678899999999999999888888888889998


Q ss_pred             CCeeeee-eccccEeEEEEcCCCCeEEEee----CCCeEEEEECCC
Q 018784           93 GDEKHSF-EHKHIVRACAFSEDTHLLLTGG----FEKILRIFDLNR  133 (350)
Q Consensus        93 ~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~----~d~~v~vwd~~~  133 (350)
                      +.....- ...+-+...+|||++.++|-+-    .-+.|+++|+..
T Consensus       433 gnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         433 GNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             CCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence            8765432 3446789999999999998654    346688998864

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.29  E-value=0.00047  Score=59.74  Aligned_cols=180  Identities=17%  Similarity=0.230  Sum_probs=112.4

Q ss_pred             CCccEEEEEe-----CCCCeeEeeCC-CCceeeeccCccCCeEEEEECCCCcEEEEe------------------eCCCe
Q 018784           29 PDGFFLVSAS-----KDSSPMLRNGE-TGDWIGTFEGHKGAVWSCCLDANALFSASG------------------SADFT   84 (350)
Q Consensus        29 ~dg~~lasgs-----~d~~v~iw~~~-~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~------------------s~Dg~   84 (350)
                      +||++|.+.=     ..|.|-|||.. +.+.+.++..|-=.=.-+.+.+|+..|+.+                  ..+-+
T Consensus        60 ~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~ps  139 (305)
T PF07433_consen   60 PDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPS  139 (305)
T ss_pred             CCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCc
Confidence            4999888753     35668999998 667777776654322345678888655544                  22333


Q ss_pred             EEEeeCCCCCeeee--e---eccccEeEEEEcCCCCeEEEeeCCCe-------EEEEECCCCC----CCCeeecCCCCcE
Q 018784           85 AKLWDALTGDEKHS--F---EHKHIVRACAFSEDTHLLLTGGFEKI-------LRIFDLNRPD----APPREVGNSSGSI  148 (350)
Q Consensus        85 v~vWd~~~~~~~~~--~---~h~~~V~~~~~~~~~~~l~sg~~d~~-------v~vwd~~~~~----~~~~~~~~~~~~v  148 (350)
                      +.+-|..+++.+..  +   .|...++.+++.++|..++..-+.+-       +-+++....-    .+......-.+.+
T Consensus       140 L~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~  219 (305)
T PF07433_consen  140 LVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYI  219 (305)
T ss_pred             eEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCce
Confidence            44445566664443  3   26678999999999876655433322       3344332210    0011112345678


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcE
Q 018784          149 RTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSV  210 (350)
Q Consensus       149 ~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i  210 (350)
                      -+|++...+..+++|+-.-+.+.+||..+++.+...... .+..++..+++ +++++..|.+
T Consensus       220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~-D~cGva~~~~~-f~~ssG~G~~  279 (305)
T PF07433_consen  220 GSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP-DACGVAPTDDG-FLVSSGQGQL  279 (305)
T ss_pred             EEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC-ceeeeeecCCc-eEEeCCCccE
Confidence            899998877788899888899999999999887665443 23445555555 5555544443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.28  E-value=0.00081  Score=63.86  Aligned_cols=266  Identities=15%  Similarity=0.169  Sum_probs=146.1

Q ss_pred             EEEEEeCCCCeeEeeCCCCceeeeccCccC------CeE--EEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeecccc
Q 018784           33 FLVSASKDSSPMLRNGETGDWIGTFEGHKG------AVW--SCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI  104 (350)
Q Consensus        33 ~lasgs~d~~v~iw~~~~~~~~~~l~gH~~------~V~--~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~  104 (350)
                      .+..++.|+.+.-.|..+|+.+..++-...      .+.  .+.+. ++..++.++.|+.|.-+|..+++.+..+.-...
T Consensus        63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~  141 (488)
T cd00216          63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQ  141 (488)
T ss_pred             EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCC
Confidence            455677789999999999988766543222      110  11111 224556677899999999999998877643222


Q ss_pred             E---eEEEEcC--CCCeEEEee---------CCCeEEEEECCCCCCCCeeecCCC-------------------CcEE-E
Q 018784          105 V---RACAFSE--DTHLLLTGG---------FEKILRIFDLNRPDAPPREVGNSS-------------------GSIR-T  150 (350)
Q Consensus       105 V---~~~~~~~--~~~~l~sg~---------~d~~v~vwd~~~~~~~~~~~~~~~-------------------~~v~-~  150 (350)
                      +   ..+.-+|  .+..++.++         .++.+..+|..+++..........                   +.+. +
T Consensus       142 ~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~  221 (488)
T cd00216         142 VPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWAS  221 (488)
T ss_pred             cCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCC
Confidence            1   0011111  123444443         357788888876654433221100                   1111 1


Q ss_pred             EEEeCCCCcEEEEEeCCC------------------eEEEEECCCCceeEeecCCC-Ce------EEEEEe----cCCc-
Q 018784          151 VAWLHSDQTILSSCTDSG------------------GVRLWDARSGKIVQTLETKS-PV------TSAEVS----RDGR-  200 (350)
Q Consensus       151 ~~~~~~~~~~~~s~~~dg------------------~i~iwd~~~~~~~~~~~~~~-~v------~~~~~~----~~~~-  200 (350)
                      .+..+.++.+++ ++.++                  .|.-.|+.+|+.+...+... ..      ....+.    -++. 
T Consensus       222 pa~d~~~g~V~v-g~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~  300 (488)
T cd00216         222 PTYDPKTNLVYV-GTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP  300 (488)
T ss_pred             eeEeCCCCEEEE-ECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence            222222344444 44333                  79999999999888765321 10      001111    1232 


Q ss_pred             ---EEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEE-----------------ecCCCeEEEEEcccC
Q 018784          201 ---YITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA-----------------GGEDMWVHVFDFHTG  260 (350)
Q Consensus       201 ---~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-----------------g~~d~~i~v~d~~~~  260 (350)
                         .++...++.+...|.++++.+..+......  ....+  +.+++.                 ...++.+.-+|+.+|
T Consensus       301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~--~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG  376 (488)
T cd00216         301 VPAIVHAPKNGFFYVLDRTTGKLISARPEVEQP--MAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG  376 (488)
T ss_pred             eEEEEEECCCceEEEEECCCCcEeeEeEeeccc--cccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence               334445788999999998887765432110  11111  222221                 124678888899888


Q ss_pred             eeEEeecCC--C------cCE--EEEEEcCCCCEEEEecCCCcEEEecCCCCCccc
Q 018784          261 EQIGCNKGH--H------GPV--HCVRFSPGGESYASGSEDGTIRIWQTNPPNHEE  306 (350)
Q Consensus       261 ~~~~~~~~h--~------~~v--~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~  306 (350)
                      +.+=.....  .      .+.  ..+..  .+..++.|+.||.|+.+|..+.+..-
T Consensus       377 ~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW  430 (488)
T cd00216         377 KVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELW  430 (488)
T ss_pred             cEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceee
Confidence            765322211  0      111  11222  45678888999999999987776553

The alignment model contains an 8-bladed beta-propeller.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.28  E-value=6.1e-05  Score=71.34  Aligned_cols=264  Identities=15%  Similarity=0.062  Sum_probs=155.4

Q ss_pred             eeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCC------------CcEEEEeeCCCeEE
Q 018784           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN------------ALFSASGSADFTAK   86 (350)
Q Consensus        19 v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~------------~~~l~s~s~Dg~v~   86 (350)
                      -.++.++|    +.++|-||. ..|.+-|.-+.+.+.+++-|+..|+.+.|.|.            ..++|++...|.|.
T Consensus        18 ~~A~Dw~~----~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi   92 (1062)
T KOG1912|consen   18 RNAADWSP----SGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII   92 (1062)
T ss_pred             ccccccCc----cceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence            44555553    457787776 56778888888999999999999999998642            24678888889999


Q ss_pred             EeeCCCCCeeeeee-ccccEeEEEEcC---CC-CeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEE
Q 018784           87 LWDALTGDEKHSFE-HKHIVRACAFSE---DT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL  161 (350)
Q Consensus        87 vWd~~~~~~~~~~~-h~~~V~~~~~~~---~~-~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  161 (350)
                      +||...+..+..+. |...+..+.|-+   +. ..|++-..-.++-+|+..+++...+..-. .....++.+.|-+.+.+
T Consensus        93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys-~~iLs~f~~DPfd~rh~  171 (1062)
T KOG1912|consen   93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS-HEILSCFRVDPFDSRHF  171 (1062)
T ss_pred             EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC-CcceeeeeeCCCCcceE
Confidence            99998877666665 456777777754   33 56777777789999999887765544322 23344566666665555


Q ss_pred             EEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCc-----EEEEEcCCcEEEEECCCcceeeeeecCCCCceeEec
Q 018784          162 SSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR-----YITTADGSSVKFWDANHFGLVKGYNMPCNTESASLE  236 (350)
Q Consensus       162 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  236 (350)
                      ..-+..|.+.+-+.-.-++     ...+...+.+..+..     -..++.+.      ..+... ....+........+.
T Consensus       172 ~~l~s~g~vl~~~~l~~se-----p~~pgk~~qI~sd~Sdl~~lere~at~n------s~ts~~-~sa~fity~a~faf~  239 (1062)
T KOG1912|consen  172 CVLGSKGFVLSCKDLGLSE-----PDVPGKEFQITSDHSDLAHLERETATGN------STTSTP-ASAYFITYCAQFAFS  239 (1062)
T ss_pred             EEEccCceEEEEeccCCCC-----CCCCceeEEEecCccchhhhhhhhhccc------cccCCC-cchhHHHHHHhhhcC
Confidence            4444557777765421110     111111122211100     00000000      000000 000000000112233


Q ss_pred             CCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCC--CEEEEecCCCcEEEecCCC
Q 018784          237 PKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGG--ESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       237 ~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~--~~lasgs~Dg~v~vw~~~~  301 (350)
                      |...+++.. .-...+.++|+.-...+...--..+.+.-+.+-|++  ..|.+.=.||.+.+|....
T Consensus       240 p~~rn~lfi-~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  240 PHWRNILFI-TFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             hhhhceEEE-EeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            333333322 235678999998777776655455555566777765  5689999999999997643

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.26  E-value=7.6e-05  Score=71.39  Aligned_cols=102  Identities=16%  Similarity=0.143  Sum_probs=78.1

Q ss_pred             CCccEEEEEe----CCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee-eeeccc
Q 018784           29 PDGFFLVSAS----KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH-SFEHKH  103 (350)
Q Consensus        29 ~dg~~lasgs----~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~-~~~h~~  103 (350)
                      |.--++|.++    ..|+|.|+ +++|++-+..+.. =.+.++||+|..-.|+.|-.-|.+-+|...+.+... ...|+.
T Consensus        25 PsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P-~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a  102 (1416)
T KOG3617|consen   25 PSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYP-VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPA  102 (1416)
T ss_pred             CCCceeEEEEecCCCCceEEEE-ecCCCCCcccccc-eehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCC
Confidence            3444777776    46778887 4677765543321 113458999999999999999999999987654333 236999


Q ss_pred             cEeEEEEcCCCCeEEEeeCCCeEEEEECC
Q 018784          104 IVRACAFSEDTHLLLTGGFEKILRIFDLN  132 (350)
Q Consensus       104 ~V~~~~~~~~~~~l~sg~~d~~v~vwd~~  132 (350)
                      .+..+.|+++|+.++|+..=|.+.+|...
T Consensus       103 ~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  103 PIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             CceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            99999999999999999999999999765

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.20  E-value=0.00063  Score=64.06  Aligned_cols=158  Identities=18%  Similarity=0.178  Sum_probs=108.0

Q ss_pred             cCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceee-eccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCC
Q 018784           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG-TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG   93 (350)
Q Consensus        15 H~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~-~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~   93 (350)
                      |...|.--+++.   .+++++.|+.-|.+.+++-..++... ..++-.+.+..++++++..++|.|+..|.|.++-+...
T Consensus        32 ~~~~v~lTc~ds---t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~  108 (726)
T KOG3621|consen   32 FPARVKLTCVDA---TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE  108 (726)
T ss_pred             CcceEEEEEeec---CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhcc
Confidence            444454444553   67899999999999999977766543 34444455667778999999999999999999977653


Q ss_pred             Cee--eee-----eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCC---CCCCeeecCCCCcEEEEEEeCCCCcEEEE
Q 018784           94 DEK--HSF-----EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP---DAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (350)
Q Consensus        94 ~~~--~~~-----~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~s  163 (350)
                      .+.  ..+     .|+..|+++.|++++..+++|...|+|..-.++..   ......+......|..+.+.  +..++++
T Consensus       109 ~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVS  186 (726)
T KOG3621|consen  109 LPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVS  186 (726)
T ss_pred             CCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHh
Confidence            321  111     36888999999999999999999999998887651   11122333445677777765  4444444


Q ss_pred             EeCCCeEEEEECCCCc
Q 018784          164 CTDSGGVRLWDARSGK  179 (350)
Q Consensus       164 ~~~dg~i~iwd~~~~~  179 (350)
                      ...  ...+++++.+.
T Consensus       187 tl~--r~~Lc~tE~et  200 (726)
T KOG3621|consen  187 TLT--RCILCQTEAET  200 (726)
T ss_pred             hhh--hhheeecchhH
Confidence            322  34556665443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.20  E-value=0.0023  Score=58.18  Aligned_cols=256  Identities=17%  Similarity=0.200  Sum_probs=134.3

Q ss_pred             CCCccEEEEEe---------CCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeee
Q 018784           28 TPDGFFLVSAS---------KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS   98 (350)
Q Consensus        28 s~dg~~lasgs---------~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~   98 (350)
                      |||+++++...         ..+...|+|+++++....... ...+....|+|+|..+|-. .++.|.+++..++.... 
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~-   77 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQ-   77 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEE-
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEE-ecCceEEEECCCCCeEE-
Confidence            46887777643         245577899998766543333 5677788999999987754 57899999887663322 


Q ss_pred             eecc-------------------ccEeEEEEcCCCCeEEEeeCC-CeEEE------------------------------
Q 018784           99 FEHK-------------------HIVRACAFSEDTHLLLTGGFE-KILRI------------------------------  128 (350)
Q Consensus        99 ~~h~-------------------~~V~~~~~~~~~~~l~sg~~d-~~v~v------------------------------  128 (350)
                      +.+.                   +.-.++.|+|++++|+..-.| ..|+.                              
T Consensus        78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~  157 (353)
T PF00930_consen   78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPR  157 (353)
T ss_dssp             SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---E
T ss_pred             eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCc
Confidence            2111                   123567899999888765432 22332                              


Q ss_pred             -----EECCCCCCCCeee----cCCCCcEEEEEEeCCCCcE-EEEEeCCC---eEEEEECCCCceeEeec--CCC---Ce
Q 018784          129 -----FDLNRPDAPPREV----GNSSGSIRTVAWLHSDQTI-LSSCTDSG---GVRLWDARSGKIVQTLE--TKS---PV  190 (350)
Q Consensus       129 -----wd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~-~~s~~~dg---~i~iwd~~~~~~~~~~~--~~~---~v  190 (350)
                           +|+.+++......    .....-+..+.|.+++..+ +.....+.   .+.++|..+++......  ...   ..
T Consensus       158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~  237 (353)
T PF00930_consen  158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY  237 (353)
T ss_dssp             EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred             eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence                 3333222110000    1223346667787665523 33333332   36667777765432222  111   11


Q ss_pred             EEEEEe-cCC-cEEEEE-cCC--cEEEEECCCcceeeeeecCCCCc--eeEecCCCCcEEEEecCCC----eEEEEEccc
Q 018784          191 TSAEVS-RDG-RYITTA-DGS--SVKFWDANHFGLVKGYNMPCNTE--SASLEPKLGNIFIAGGEDM----WVHVFDFHT  259 (350)
Q Consensus       191 ~~~~~~-~~~-~~l~~~-~~~--~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~sg~~d~----~i~v~d~~~  259 (350)
                      ....+. +++ .++..+ .+|  +|.+++....... .++......  ...+....+.++.++..+.    .|+.-++..
T Consensus       238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~  316 (353)
T PF00930_consen  238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDS  316 (353)
T ss_dssp             SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTE
T ss_pred             cccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCC
Confidence            234444 554 344333 444  5677777665432 222211111  2344555556666666533    455556663


Q ss_pred             CeeEEeecCCCcCEEEEEEcCCCCEEEE
Q 018784          260 GEQIGCNKGHHGPVHCVRFSPGGESYAS  287 (350)
Q Consensus       260 ~~~~~~~~~h~~~v~~l~~sp~~~~las  287 (350)
                      +..+..+......-..+.|||++++++-
T Consensus       317 ~~~~~~LT~~~~~~~~~~~Spdg~y~v~  344 (353)
T PF00930_consen  317 GGEPKCLTCEDGDHYSASFSPDGKYYVD  344 (353)
T ss_dssp             TTEEEESSTTSSTTEEEEE-TTSSEEEE
T ss_pred             CCCeEeccCCCCCceEEEECCCCCEEEE
Confidence            4444555543333379999999998763

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.17  E-value=0.0029  Score=52.91  Aligned_cols=280  Identities=15%  Similarity=0.085  Sum_probs=137.0

Q ss_pred             eccCCceeEEEecccCCC------------------ccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeE-EEEECCCC
Q 018784           13 HGHSRPVVDLFYSPITPD------------------GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVW-SCCLDANA   73 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~d------------------g~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~-~v~~~~~~   73 (350)
                      .-|.+.+.++.+-.  ..                  |.+++.|...+.+...+.++|+....+..- +.|. .....+++
T Consensus        29 gSHs~~~~avd~~s--G~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a~~d~~~  105 (354)
T KOG4649|consen   29 GSHSGIVIAVDPQS--GNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRAQCDFDG  105 (354)
T ss_pred             ecCCceEEEecCCC--CcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeeh-hhhccceEEcCCC
Confidence            45888888776521  11                  668899999999999999999766655432 2221 22457889


Q ss_pred             cEEEEeeCCCeEEEeeCCCCCeeeeeeccccEe-EEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEE-
Q 018784           74 LFSASGSADFTAKLWDALTGDEKHSFEHKHIVR-ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV-  151 (350)
Q Consensus        74 ~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~-~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~-  151 (350)
                      .++.-|+.|++....|..+..++....-.+.+. +-+..|-...|+.+...|.+.--................+++.+- 
T Consensus       106 glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~sp  185 (354)
T KOG4649|consen  106 GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASP  185 (354)
T ss_pred             ceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCc
Confidence            999999999999999998888777654333322 223445222333333333333222221100000000001111000 


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCe-----------EEEEEecCCcEEEEEcCCcEEEEECCCcce
Q 018784          152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPV-----------TSAEVSRDGRYITTADGSSVKFWDANHFGL  220 (350)
Q Consensus       152 ~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~  220 (350)
                      .+.  .+....+ .-||.+.-+| ..|+.+.......+|           ..+.+..++-+.+.-.-...-+|..+++..
T Consensus       186 lcv--~~sv~i~-~VdG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t  261 (354)
T KOG4649|consen  186 LCV--GSSVIIT-TVDGVLTSFD-ESGRQVWRPATKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTT  261 (354)
T ss_pred             eec--cceEEEE-EeccEEEEEc-CCCcEEEeecCCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcE
Confidence            000  1111111 1234444444 333333333322221           233333333333332223345566555433


Q ss_pred             eeeeecCCCC-ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcC---EEEEEE-----c-CC--CCEEEEe
Q 018784          221 VKGYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGP---VHCVRF-----S-PG--GESYASG  288 (350)
Q Consensus       221 ~~~~~~~~~~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~---v~~l~~-----s-p~--~~~lasg  288 (350)
                      .+.+-.+... ..-.......+++..++.||++.+.-.+  ..+.....|.+.   ++.+.+     + |-  +..|..|
T Consensus       262 ~~vy~~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~--~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~ig  339 (354)
T KOG4649|consen  262 LHVYLSPKLRFDLHSPGISYPKLLRRSSGDGKVMILMTS--KSLAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIG  339 (354)
T ss_pred             EEEEeCcccceeccCCCCcchhhhhhhcCCCcEEEEEec--ccccccccCCCccceEEEeecCcccccCCeEEccEEEEE
Confidence            3332222110 0000111124677788899998887432  222222233322   333322     2 21  2457789


Q ss_pred             cCCCcEEEecCCC
Q 018784          289 SEDGTIRIWQTNP  301 (350)
Q Consensus       289 s~Dg~v~vw~~~~  301 (350)
                      +.|..|+.||+..
T Consensus       340 cRDdYv~cldl~~  352 (354)
T KOG4649|consen  340 CRDDYVRCLDLDT  352 (354)
T ss_pred             EccCeEEEEeccc
Confidence            9999999999864

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.16  E-value=0.00046  Score=65.82  Aligned_cols=180  Identities=17%  Similarity=0.176  Sum_probs=117.9

Q ss_pred             eEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecC
Q 018784           64 VWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN  143 (350)
Q Consensus        64 V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~  143 (350)
                      +.|+++  .+++++=|..+|.|.+.+..... ...+.|...      .-+|.+++||+.||+|.|..+.+.+.....  .
T Consensus        42 is~~av--~~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~--d  110 (846)
T KOG2066|consen   42 ISCCAV--HDKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY--D  110 (846)
T ss_pred             HHHHHh--hcceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE--e
Confidence            344444  46788899999999999875443 444555443      557999999999999999988765543322  2


Q ss_pred             CCCcEEEEEEeCC----CCcEEEEEeCCCeEEEEECC---CCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECC
Q 018784          144 SSGSIRTVAWLHS----DQTILSSCTDSGGVRLWDAR---SGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDAN  216 (350)
Q Consensus       144 ~~~~v~~~~~~~~----~~~~~~s~~~dg~i~iwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~  216 (350)
                      ....+.++++.|.    ..+.+++|+.-| +.++.-+   ....+..-...++|.++.|.  |.+++=++|-.|++||..
T Consensus       111 f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~  187 (846)
T KOG2066|consen  111 FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTP  187 (846)
T ss_pred             cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEEEecc
Confidence            3456777877654    346788888877 7776532   11222222346788888887  568888888899999998


Q ss_pred             CcceeeeeecCCCCce-----eEecCCCCcEEEEecCCCeEEEEEcc
Q 018784          217 HFGLVKGYNMPCNTES-----ASLEPKLGNIFIAGGEDMWVHVFDFH  258 (350)
Q Consensus       217 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~sg~~d~~i~v~d~~  258 (350)
                      ..+.+.....+.....     ..+...+...|+.|..| +|++..++
T Consensus       188 ~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  188 TRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD-SVKICSIK  233 (846)
T ss_pred             ccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCC-eEEEEEEe
Confidence            8776655444332211     12222345667777655 57888776

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.16  E-value=0.00069  Score=64.21  Aligned_cols=176  Identities=11%  Similarity=0.062  Sum_probs=112.1

Q ss_pred             ECCCCcEEE-EeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCC----eEEEEECCCCCCCCeeecC
Q 018784           69 LDANALFSA-SGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK----ILRIFDLNRPDAPPREVGN  143 (350)
Q Consensus        69 ~~~~~~~l~-s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~----~v~vwd~~~~~~~~~~~~~  143 (350)
                      +++||+.+. +.-..+.+-+.|..+.+....+.-.+....++++|+++++++.+.+.    ++..-+...          
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e----------  269 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE----------  269 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeecccc----------
Confidence            456775443 33444677778888777666665555667889999999998876432    222222211          


Q ss_pred             CCCcEEEE------EEeCCCCcEEEEEeCCCeEEEEECCC-----CceeEeecCCCCeEEEEEecCCcEEEEEc--CCcE
Q 018784          144 SSGSIRTV------AWLHSDQTILSSCTDSGGVRLWDARS-----GKIVQTLETKSPVTSAEVSRDGRYITTAD--GSSV  210 (350)
Q Consensus       144 ~~~~v~~~------~~~~~~~~~~~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i  210 (350)
                       ...+..+      ++.. +++....  .+++|.+.|.++     .+.+..+........+.++|||+++.++.  +.+|
T Consensus       270 -~d~~vvfni~~iea~vk-dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tV  345 (635)
T PRK02888        270 -RDWVVVFNIARIEEAVK-AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTV  345 (635)
T ss_pred             -CceEEEEchHHHHHhhh-CCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcE
Confidence             1111111      1122 2333332  257899999998     46677777777778899999999988765  5789


Q ss_pred             EEEECCCcce------------eeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEccc
Q 018784          211 KFWDANHFGL------------VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (350)
Q Consensus       211 ~vwd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~  259 (350)
                      .|+|+.+.+.            +........+.-..|.. .++.+.+--.|..|..||+..
T Consensus       346 SVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        346 TVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence            9999987553            22222222333344544 367788888899999999876

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.14  E-value=2.1e-06  Score=79.22  Aligned_cols=197  Identities=17%  Similarity=0.228  Sum_probs=122.3

Q ss_pred             cccEeEEEEcC--CCCeEEEeeCCCeEEEEECCCCCCC-CeeecCCCCcEEEEEEeCCCCcEEEEEe----CCCeEEEEE
Q 018784          102 KHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAP-PREVGNSSGSIRTVAWLHSDQTILSSCT----DSGGVRLWD  174 (350)
Q Consensus       102 ~~~V~~~~~~~--~~~~l~sg~~d~~v~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~s~~----~dg~i~iwd  174 (350)
                      ...+.|++...  +.-+++.|..+|.|-+-.+..+.-. .+....+....++.+|.+-|..+++.|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            34566666543  3357788999999999877654332 3444556667888999887777776653    345799999


Q ss_pred             CCCC--ceeEeec----CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcc-eeeeeecCCCCceeEecCCCCcEEEEe
Q 018784          175 ARSG--KIVQTLE----TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFG-LVKGYNMPCNTESASLEPKLGNIFIAG  246 (350)
Q Consensus       175 ~~~~--~~~~~~~----~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~sg  246 (350)
                      +.++  .+.....    ......+++|..+.+++.++ ..+.+.++|+|... ....+.. .......+.|..++++++-
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT-k~vqG~tVdp~~~nY~cs~  214 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT-KYVQGITVDPFSPNYFCSN  214 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh-hhcccceecCCCCCceecc
Confidence            9876  2222221    12345678888887776555 56689999998422 1111100 0122344555567787776


Q ss_pred             cCCCeEEEEE-cccCee-EEeecCCC----cCEEEEEEcCCCC-EEEEecC-CCcEEEecCC
Q 018784          247 GEDMWVHVFD-FHTGEQ-IGCNKGHH----GPVHCVRFSPGGE-SYASGSE-DGTIRIWQTN  300 (350)
Q Consensus       247 ~~d~~i~v~d-~~~~~~-~~~~~~h~----~~v~~l~~sp~~~-~lasgs~-Dg~v~vw~~~  300 (350)
                      . |+.|.+|| .+.-+. +..+.-.+    ..+..++|+|-.+ .+++.+. .++|++++..
T Consensus       215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            6 99999999 443332 22222122    2489999999754 3555554 4788999864

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.13  E-value=0.0042  Score=62.20  Aligned_cols=199  Identities=12%  Similarity=0.155  Sum_probs=123.9

Q ss_pred             CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccC-ccCCeEEEEECCCCcEEEEeeCCCeEEEeeC----C
Q 018784           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-HKGAVWSCCLDANALFSASGSADFTAKLWDA----L   91 (350)
Q Consensus        17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~g-H~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~----~   91 (350)
                      +.|.++.|..   +..-+..+..+|.|.+-|.++....  +.| =.+.|.+++|+||..+++-...++++-+-.-    -
T Consensus        69 ~~i~s~~fl~---d~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i  143 (1265)
T KOG1920|consen   69 DEIVSVQFLA---DTNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPI  143 (1265)
T ss_pred             cceEEEEEec---ccceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccch
Confidence            5788888875   6777788888999999888776542  222 3477999999999999888878888766431    1


Q ss_pred             CCCee-------------------eeee-------------cc---------ccEeEEEEcCCCCeEEEe-----eCCCe
Q 018784           92 TGDEK-------------------HSFE-------------HK---------HIVRACAFSEDTHLLLTG-----GFEKI  125 (350)
Q Consensus        92 ~~~~~-------------------~~~~-------------h~---------~~V~~~~~~~~~~~l~sg-----~~d~~  125 (350)
                      .-+.+                   ..+.             +.         +.=.++.|--||+++++.     ..-+.
T Consensus       144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk  223 (1265)
T KOG1920|consen  144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK  223 (1265)
T ss_pred             hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence            00000                   0010             00         011348899999999873     23389


Q ss_pred             EEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEE--eCCCeEEEEECCCCceeEe----ecCC-CCeEEEEEecC
Q 018784          126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC--TDSGGVRLWDARSGKIVQT----LETK-SPVTSAEVSRD  198 (350)
Q Consensus       126 v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~--~~dg~i~iwd~~~~~~~~~----~~~~-~~v~~~~~~~~  198 (350)
                      |++||-+ +.. ........+.-.+++|-|.+..+.+..  +.|+.|.++. ++|-....    +..+ .++..++|+.+
T Consensus       224 irV~drE-g~L-ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wns~  300 (1265)
T KOG1920|consen  224 IRVYDRE-GAL-NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWNSN  300 (1265)
T ss_pred             EEEeccc-chh-hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeeecCC
Confidence            9999976 221 111112233344677877544433322  3456799987 44433222    2222 34899999999


Q ss_pred             CcEEEE---Ec-CCcEEEEECCCcceeee
Q 018784          199 GRYITT---AD-GSSVKFWDANHFGLVKG  223 (350)
Q Consensus       199 ~~~l~~---~~-~~~i~vwd~~~~~~~~~  223 (350)
                      +.+|+.   .. ...|++|-..++.....
T Consensus       301 sdiLAv~~~~~e~~~v~lwt~~NyhWYLK  329 (1265)
T KOG1920|consen  301 SDILAVVTSNLENSLVQLWTTGNYHWYLK  329 (1265)
T ss_pred             CCceeeeecccccceEEEEEecCeEEEEE
Confidence            998876   22 34599999988765433

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.09  E-value=3.2e-05  Score=74.40  Aligned_cols=143  Identities=18%  Similarity=0.207  Sum_probs=105.5

Q ss_pred             CccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeC---------CCeEEEeeCCCCCeeeeee
Q 018784           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA---------DFTAKLWDALTGDEKHSFE  100 (350)
Q Consensus        30 dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~---------Dg~v~vWd~~~~~~~~~~~  100 (350)
                      +++++.+|...|+|.+.|..+.+.++++.+|++.|.  +|+-.|.+|+|+|.         |.-|+|||+.+-+.+.-+.
T Consensus       186 Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS--DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~  263 (1118)
T KOG1275|consen  186 NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS--DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ  263 (1118)
T ss_pred             cCcEEEeecccceEEeecCCcCceeeeeecccccee--eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcc
Confidence            468999999999999999999999999999999985  56678889998865         4568999998766555444


Q ss_pred             ccccEeEEEEcCC-CCeEEEeeCCCeEEEEE---CCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEEC
Q 018784          101 HKHIVRACAFSED-THLLLTGGFEKILRIFD---LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (350)
Q Consensus       101 h~~~V~~~~~~~~-~~~l~sg~~d~~v~vwd---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~  175 (350)
                      -.....-+.|+|. ...+++++..|...+-|   +..+.......-.....+..+.+++.++ .++-+..+|.|.+|--
T Consensus       264 ~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  264 FPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             cccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeecC
Confidence            3333466778884 46778888899999888   4333222222233334477888776554 5556777899999973

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.06  E-value=0.00044  Score=50.29  Aligned_cols=103  Identities=20%  Similarity=0.161  Sum_probs=71.8

Q ss_pred             eeEEEecccCCCc-cEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee
Q 018784           19 VVDLFYSPITPDG-FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH   97 (350)
Q Consensus        19 v~~~~~~~~s~dg-~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~   97 (350)
                      |+++++..+..|| .-|+.||.|..||+|+.+  +.+.++..+ +.|.+++-... ..++-+-..|+|-+++-.  ..+.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence            7888888888776 688999999999999844  666666654 45556655444 556788899999999853  3344


Q ss_pred             eeeccccEeEEEEcC-C--C-CeEEEeeCCCeEE
Q 018784           98 SFEHKHIVRACAFSE-D--T-HLLLTGGFEKILR  127 (350)
Q Consensus        98 ~~~h~~~V~~~~~~~-~--~-~~l~sg~~d~~v~  127 (350)
                      ....+..+.++++.. +  | ..|++|-.+|.|-
T Consensus        76 RiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            444455566665543 2  2 3577887787764

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.04  E-value=5.2e-05  Score=69.95  Aligned_cols=74  Identities=19%  Similarity=0.221  Sum_probs=62.5

Q ss_pred             CccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCC
Q 018784           59 GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR  133 (350)
Q Consensus        59 gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~  133 (350)
                      .+...|.+++++|+...++.|..||+|.+||...+..... ...-.+..++|||+|.++++|+..|.+.+||+.-
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            3667889999999999999999999999999876643322 3444578899999999999999999999999863

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.04  E-value=0.002  Score=61.22  Aligned_cols=139  Identities=17%  Similarity=0.178  Sum_probs=96.4

Q ss_pred             EEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE------------------------------------
Q 018784          162 SSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA------------------------------------  205 (350)
Q Consensus       162 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------------------------------------  205 (350)
                      ...-..+.+.+.|..+.+...++........+.++++|+++.+.                                    
T Consensus       209 ~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdG  288 (635)
T PRK02888        209 DPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAG  288 (635)
T ss_pred             cccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCC
Confidence            33444467888898887777776655555566677777665433                                    


Q ss_pred             -----cCCcEEEEECCC-----cceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCee------------E
Q 018784          206 -----DGSSVKFWDANH-----FGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ------------I  263 (350)
Q Consensus       206 -----~~~~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~------------~  263 (350)
                           .++.|.+.|.++     ...+..+..+..+..+.++|+...+++++..+.++-|+|+.+.+.            +
T Consensus       289 K~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vv  368 (635)
T PRK02888        289 KFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVV  368 (635)
T ss_pred             CEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEE
Confidence                 124588888887     456666666667777888876445666777799999999987553            2


Q ss_pred             EeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784          264 GCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       264 ~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~  301 (350)
                      ....- .-.....+|.++|..+.|--.|..|..|++..
T Consensus       369 aevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        369 AEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             Eeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            22221 22245688999998888888999999999865

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.94  E-value=0.0043  Score=57.67  Aligned_cols=74  Identities=18%  Similarity=0.324  Sum_probs=57.0

Q ss_pred             eecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          224 YNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      +..+....++..++ ....|+.|+.||.|.+||...+...  .....-.++.++|+|+|.+++.|+..|.+.+||..
T Consensus       256 ipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  256 IPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             EecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            34445555666655 4688999999999999998766433  22344557899999999999999999999999974

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.93  E-value=0.011  Score=52.07  Aligned_cols=238  Identities=13%  Similarity=0.067  Sum_probs=130.4

Q ss_pred             CCCccEEEEEe----------CCCCeeEeeCCCCceeeecc--C-ccCCe----EEEEECCCCcEEEE--eeCCCeEEEe
Q 018784           28 TPDGFFLVSAS----------KDSSPMLRNGETGDWIGTFE--G-HKGAV----WSCCLDANALFSAS--GSADFTAKLW   88 (350)
Q Consensus        28 s~dg~~lasgs----------~d~~v~iw~~~~~~~~~~l~--g-H~~~V----~~v~~~~~~~~l~s--~s~Dg~v~vW   88 (350)
                      +|||+.+.+++          ....|.+||..+-.+...+.  . |...+    +..+++.+++++..  .+--.+|-|-
T Consensus        44 spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVV  123 (342)
T PF06433_consen   44 SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVV  123 (342)
T ss_dssp             -TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEE
T ss_pred             CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEE
Confidence            45888887765          24457899999887776443  2 22221    23456667765543  2333556666


Q ss_pred             eCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee----cCCCC-cEEEEEEeCCCCcEEEE
Q 018784           89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV----GNSSG-SIRTVAWLHSDQTILSS  163 (350)
Q Consensus        89 d~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~----~~~~~-~v~~~~~~~~~~~~~~s  163 (350)
                      |+..++....+.-+++..-.-..+  .-+.+-+.||.+....+..........    ..... ....-++...++.++..
T Consensus       124 Dl~~~kvv~ei~~PGC~~iyP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~  201 (342)
T PF06433_consen  124 DLAAKKVVGEIDTPGCWLIYPSGN--RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFV  201 (342)
T ss_dssp             ETTTTEEEEEEEGTSEEEEEEEET--TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEE
T ss_pred             ECCCCceeeeecCCCEEEEEecCC--CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEE
Confidence            766666655555555433222222  347788899999988887433221110    00011 11111222233333332


Q ss_pred             EeCCCeEEEEECCCCce--eEeecC-----------CCCeEEEEEecC-CcEEEEEc----------CCcEEEEECCCcc
Q 018784          164 CTDSGGVRLWDARSGKI--VQTLET-----------KSPVTSAEVSRD-GRYITTAD----------GSSVKFWDANHFG  219 (350)
Q Consensus       164 ~~~dg~i~iwd~~~~~~--~~~~~~-----------~~~v~~~~~~~~-~~~l~~~~----------~~~i~vwd~~~~~  219 (350)
                       +.+|.|+--|+.....  ...+..           ++...-+++++. +++.+...          +..|-++|+.+.+
T Consensus       202 -Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k  280 (342)
T PF06433_consen  202 -SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK  280 (342)
T ss_dssp             -BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE
T ss_pred             -ecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe
Confidence             4667888877765432  112211           123445677754 44444321          1258889999999


Q ss_pred             eeeeeecCCCCceeEecCCCCcEE-EEecCCCeEEEEEcccCeeEEeecC
Q 018784          220 LVKGYNMPCNTESASLEPKLGNIF-IAGGEDMWVHVFDFHTGEQIGCNKG  268 (350)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~l-~sg~~d~~i~v~d~~~~~~~~~~~~  268 (350)
                      .+..+.++....++.+......+| +....++.+.+||..+|+.++.+.+
T Consensus       281 rv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  281 RVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             EEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             EEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            998888765555666665554455 4456789999999999999887753

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.91  E-value=0.013  Score=51.13  Aligned_cols=225  Identities=14%  Similarity=0.081  Sum_probs=123.2

Q ss_pred             CccEEEEEeCCCCeeEeeC-CCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee-----------
Q 018784           30 DGFFLVSASKDSSPMLRNG-ETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH-----------   97 (350)
Q Consensus        30 dg~~lasgs~d~~v~iw~~-~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~-----------   97 (350)
                      .+..|+.|+.+| +.+++. ....+....+  ..+|..+..-++-..++.- .|+.+.++++..-....           
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccc
Confidence            567889999988 888887 3334433333  2338888877765544433 36999999976443222           


Q ss_pred             ----eeeccccEeEEE--EcCCCCeEEEeeCCCeEEEEECCCCCCC---CeeecCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784           98 ----SFEHKHIVRACA--FSEDTHLLLTGGFEKILRIFDLNRPDAP---PREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (350)
Q Consensus        98 ----~~~h~~~V~~~~--~~~~~~~l~sg~~d~~v~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg  168 (350)
                          .+.....+...+  -.+.+...+.....+.|.+|........   ....-.....+..++|.  ++. ++.|.. +
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~-i~v~~~-~  157 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNK-ICVGTS-K  157 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCE-EEEEeC-C
Confidence                222333344444  1234444455555669999987653211   11122334678888888  333 444444 4


Q ss_pred             eEEEEECCCCceeEeecCC-------------CCeEEEEEecCCcEEEEEcCCcEEEEECCCcce-eeeeecCCCCceeE
Q 018784          169 GVRLWDARSGKIVQTLETK-------------SPVTSAEVSRDGRYITTADGSSVKFWDANHFGL-VKGYNMPCNTESAS  234 (350)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~-~~~~~~~~~~~~~~  234 (350)
                      ...+.|+.++.....+...             .++. +.--+++.+|.+.++ .-.+.|...... ...+.++..+....
T Consensus       158 ~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~Ll~~~~-~g~fv~~~G~~~r~~~i~W~~~p~~~~  235 (275)
T PF00780_consen  158 GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLG-IFQLSDNEFLLCYDN-IGVFVNKNGEPSRKSTIQWSSAPQSVA  235 (275)
T ss_pred             ceEEEecCCCCceEEeCccCCcchhhhcccCCCceE-EEEeCCceEEEEecc-eEEEEcCCCCcCcccEEEcCCchhEEE
Confidence            6888999877543332211             1222 222344566665443 223333322111 12344444444444


Q ss_pred             ecCCCCcEEEEecCCCeEEEEEcccCeeEEeecC
Q 018784          235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG  268 (350)
Q Consensus       235 ~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~  268 (350)
                      +..   .++++-.. +.|.||++.+++.+.++..
T Consensus       236 ~~~---pyli~~~~-~~iEV~~~~~~~lvQ~i~~  265 (275)
T PF00780_consen  236 YSS---PYLIAFSS-NSIEVRSLETGELVQTIPL  265 (275)
T ss_pred             EEC---CEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence            432   35555444 5599999999988776654

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.90  E-value=5.2e-06  Score=76.74  Aligned_cols=162  Identities=15%  Similarity=0.190  Sum_probs=111.1

Q ss_pred             eccCCceeEEEecccCCCccEEEEEe----CCCCeeEeeCCCC--cee--eeccC-ccCCeEEEEECCCCcEEEEeeCCC
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSAS----KDSSPMLRNGETG--DWI--GTFEG-HKGAVWSCCLDANALFSASGSADF   83 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs----~d~~v~iw~~~~~--~~~--~~l~g-H~~~V~~v~~~~~~~~l~s~s~Dg   83 (350)
                      .+|..+.++++|++.  |...||.|=    .|..+.|||..++  .+.  ..|.+ --..+.++||..+.+++.+|....
T Consensus        99 p~~ar~Ct~lAwneL--Dtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr  176 (783)
T KOG1008|consen   99 PGYARPCTSLAWNEL--DTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSR  176 (783)
T ss_pred             ccccccccccccccc--cHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccc
Confidence            577888899999885  556777662    4667899998765  111  12222 233455788888888899999999


Q ss_pred             eEEEeeCCCCCeeeeeeccccEeEEEEcC-CCCeEEEeeCCCeEEEEE-CCCCCCCCeeecCCCC----cEEEEEEeCCC
Q 018784           84 TAKLWDALTGDEKHSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFD-LNRPDAPPREVGNSSG----SIRTVAWLHSD  157 (350)
Q Consensus        84 ~v~vWd~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd-~~~~~~~~~~~~~~~~----~v~~~~~~~~~  157 (350)
                      .+.++|+.........-.+..|..+...| .+.++++-. |+.|.+|| ..+-+.+.....+...    .+..++|.|..
T Consensus       177 ~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr  255 (783)
T KOG1008|consen  177 SVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR  255 (783)
T ss_pred             hhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence            99999975332222222455678888888 777776655 99999999 3333333333332222    48899999887


Q ss_pred             CcEEEEEeCC-CeEEEEECCC
Q 018784          158 QTILSSCTDS-GGVRLWDARS  177 (350)
Q Consensus       158 ~~~~~s~~~d-g~i~iwd~~~  177 (350)
                      ..+++++..| ++|+++|+..
T Consensus       256 tglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  256 TGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             cchhhhhccCcceEEEecccc
Confidence            7778888777 6899999863

>smart00320 WD40 WD40 repeats

Probab=97.89  E-value=3.7e-05  Score=44.05  Aligned_cols=39  Identities=41%  Similarity=0.675  Sum_probs=34.9

Q ss_pred             CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784           51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (350)
Q Consensus        51 ~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd   89 (350)
                      +++...+.+|...|.++.+.+.+.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            356677888999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>smart00320 WD40 WD40 repeats

Probab=97.89  E-value=4.7e-05  Score=43.58  Aligned_cols=38  Identities=53%  Similarity=0.939  Sum_probs=33.1

Q ss_pred             eeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          261 EQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       261 ~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      +....+..|...|.+++|+|.+.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            34455667888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.89  E-value=0.0098  Score=52.43  Aligned_cols=257  Identities=16%  Similarity=0.213  Sum_probs=141.9

Q ss_pred             CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEe----------eCCCeEEEeeCCCCCeeeeeeccc--------
Q 018784           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASG----------SADFTAKLWDALTGDEKHSFEHKH--------  103 (350)
Q Consensus        42 ~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~----------s~Dg~v~vWd~~~~~~~~~~~h~~--------  103 (350)
                      .+.+.|..+++.+..+.+  +-.-.+.++|+++.+.++          -..-.|.+||..+-.....+.-+.        
T Consensus        18 rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~   95 (342)
T PF06433_consen   18 RVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP   95 (342)
T ss_dssp             EEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred             eEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence            588999999998887764  222335678999988764          334569999998876655442111        


Q ss_pred             cEeEEEEcCCCCeEEEeeC--CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECC-CCce
Q 018784          104 IVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR-SGKI  180 (350)
Q Consensus       104 ~V~~~~~~~~~~~l~sg~~--d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~-~~~~  180 (350)
                      .....+++.++++++..-.  -..|.|-|+...+-.. ... -.++   ....|..+.-+.+-..||++.-..+. .|+.
T Consensus        96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~-ei~-~PGC---~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~  170 (342)
T PF06433_consen   96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVG-EID-TPGC---WLIYPSGNRGFSMLCGDGSLLTVTLDADGKE  170 (342)
T ss_dssp             -GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEE-EEE-GTSE---EEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred             cccceEEccCCcEEEEEccCCCCeEEEEECCCCceee-eec-CCCE---EEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence            1234577888887766433  4567788876433221 111 1121   11123332334444467888888876 5555


Q ss_pred             eEeec----C-CCCe-EEEEEe-cCCcEEEEEcCCcEEEEECCCccee--eeeec-----------CCCCceeEecCCCC
Q 018784          181 VQTLE----T-KSPV-TSAEVS-RDGRYITTADGSSVKFWDANHFGLV--KGYNM-----------PCNTESASLEPKLG  240 (350)
Q Consensus       181 ~~~~~----~-~~~v-~~~~~~-~~~~~l~~~~~~~i~vwd~~~~~~~--~~~~~-----------~~~~~~~~~~~~~~  240 (350)
                      .....    . ..++ ..-.+. ..+.++..+-.|.|+--|+......  .....           |.......+++..+
T Consensus       171 ~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~  250 (342)
T PF06433_consen  171 AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASG  250 (342)
T ss_dssp             EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTT
T ss_pred             eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccC
Confidence            42221    1 1121 222233 2345666666677776666543321  11111           22233455555555


Q ss_pred             cEEEEec-------CCC--eEEEEEcccCeeEEeecCCCcCEEEEEEcCCC-CEEEE-ecCCCcEEEecCCCCCccc
Q 018784          241 NIFIAGG-------EDM--WVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGG-ESYAS-GSEDGTIRIWQTNPPNHEE  306 (350)
Q Consensus       241 ~~l~sg~-------~d~--~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~-~~las-gs~Dg~v~vw~~~~~~~~~  306 (350)
                      ++++.--       .|+  .|-+||+.+++.+..+.. ..++.+|..+.+. ++|.+ ...++.|.+||..+.+...
T Consensus       251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~  326 (342)
T PF06433_consen  251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR  326 (342)
T ss_dssp             EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred             eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence            5544311       122  577889999999887763 2347789999765 46654 4568999999987765543

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.89  E-value=0.012  Score=50.19  Aligned_cols=192  Identities=15%  Similarity=0.157  Sum_probs=114.1

Q ss_pred             eeccCCceeEEEecccCCC-ccEEEEEeCCCCeeEeeCCCCceeeec--cCccCCeEEEEECCCCcEEEEeeCCCeEEEe
Q 018784           12 CHGHSRPVVDLFYSPITPD-GFFLVSASKDSSPMLRNGETGDWIGTF--EGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~d-g~~lasgs~d~~v~iw~~~~~~~~~~l--~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vW   88 (350)
                      +.|=...+++++|+|   + ++++++....+.|...+. +|+.++.+  .| .+-.-.+++-.++.++++.-.++.+.+.
T Consensus        17 l~g~~~e~SGLTy~p---d~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~   91 (248)
T PF06977_consen   17 LPGILDELSGLTYNP---DTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIF   91 (248)
T ss_dssp             -TT--S-EEEEEEET---TTTEEEEEETTTTEEEEEET-T--EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred             CCCccCCccccEEcC---CCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence            356666799999997   5 556777777777777775 57777755  44 2455678888888888887779999999


Q ss_pred             eCCCCC---ee---e--ee----eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCC--CCCCCee--------ecCCCC
Q 018784           89 DALTGD---EK---H--SF----EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR--PDAPPRE--------VGNSSG  146 (350)
Q Consensus        89 d~~~~~---~~---~--~~----~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~--~~~~~~~--------~~~~~~  146 (350)
                      ++....   ..   .  .+    .++..+-.++|.|.++.|+.+-.....++|.+..  .......        ......
T Consensus        92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (248)
T PF06977_consen   92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR  171 (248)
T ss_dssp             EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred             EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence            873221   11   1  11    1455689999999888888777776677776643  1111100        112234


Q ss_pred             cEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC----------CCeEEEEEecCCcEEEEEcCCc
Q 018784          147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK----------SPVTSAEVSRDGRYITTADGSS  209 (350)
Q Consensus       147 ~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~~~  209 (350)
                      .+.++++.+..+.+++-....+.|..+| .+|+.+..+...          .....+++.++|++.+++.-+.
T Consensus       172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNl  243 (248)
T PF06977_consen  172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNL  243 (248)
T ss_dssp             ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTE
T ss_pred             cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCce
Confidence            5678888888777777777888999999 678776665432          2467899999998888776443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.88  E-value=0.004  Score=60.18  Aligned_cols=200  Identities=16%  Similarity=0.193  Sum_probs=113.9

Q ss_pred             EECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-ecccc-EeEEEEcCCCCeEEEeeCCC-----eEEEEECCCCCCC--C
Q 018784           68 CLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHI-VRACAFSEDTHLLLTGGFEK-----ILRIFDLNRPDAP--P  138 (350)
Q Consensus        68 ~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~-V~~~~~~~~~~~l~sg~~d~-----~v~vwd~~~~~~~--~  138 (350)
                      ++++.+..+|-|+.||.|.+.+-.-. ..+.+ .+... |..+....+..+|++.+.|.     .+++|++++.+..  +
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~~-~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSFQ-LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccce-eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            56778888899999999988874321 21222 33333 55555555556788776654     5999998754211  1


Q ss_pred             eee-----cC-----CCCcEEEEEEeCCCCcEEEEEeCCCeEEEEE--C-CC--CceeEeecCCCCeEEEEEecCCcE-E
Q 018784          139 REV-----GN-----SSGSIRTVAWLHSDQTILSSCTDSGGVRLWD--A-RS--GKIVQTLETKSPVTSAEVSRDGRY-I  202 (350)
Q Consensus       139 ~~~-----~~-----~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd--~-~~--~~~~~~~~~~~~v~~~~~~~~~~~-l  202 (350)
                      ...     ..     ...++.+++.+ .+-..++.|-.+|.|.++.  + |.  -+.........+|+.+.+..+++. +
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs-~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVS-EDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL  187 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEE-ccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence            111     11     12334445544 4566788888899999884  2 11  122223345679999999988865 4


Q ss_pred             EEEcCCcEEEEECCCcceeee-eecCCC-CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec-CCCc
Q 018784          203 TTADGSSVKFWDANHFGLVKG-YNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK-GHHG  271 (350)
Q Consensus       203 ~~~~~~~i~vwd~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~-~h~~  271 (350)
                      .++.-..|.+|.+....+... ..-.+. ..+.++++..++ +++++ ...+.+|+......-..+. ||.-
T Consensus       188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~q-fIca~-~e~l~fY~sd~~~~cfaf~~g~kk  257 (933)
T KOG2114|consen  188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQ-FICAG-SEFLYFYDSDGRGPCFAFEVGEKK  257 (933)
T ss_pred             EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCcc-EEEec-CceEEEEcCCCcceeeeecCCCeE
Confidence            455556788888874431111 221111 223344443333 44443 3468899877544444444 5553

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.86  E-value=0.016  Score=50.59  Aligned_cols=224  Identities=12%  Similarity=0.072  Sum_probs=121.8

Q ss_pred             CCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee----------
Q 018784           71 ANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE----------  140 (350)
Q Consensus        71 ~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~----------  140 (350)
                      ..+..++-|..+| +.+++...........+...|..+..-|+-+.|++-+ |+.+.++++..-......          
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~   82 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS   82 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence            4566777787777 8888883333334444445599999988777766654 499999998643322210          


Q ss_pred             ---ecCCCCcEEEEE--EeCCCCcEEEEEeCCCeEEEEECCC----C-ceeEeecCCCCeEEEEEecCCcEEEEEcCCcE
Q 018784          141 ---VGNSSGSIRTVA--WLHSDQTILSSCTDSGGVRLWDARS----G-KIVQTLETKSPVTSAEVSRDGRYITTADGSSV  210 (350)
Q Consensus       141 ---~~~~~~~v~~~~--~~~~~~~~~~s~~~dg~i~iwd~~~----~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i  210 (350)
                         .......+..++  -...+...++.+.. ++|.+|....    . +....+.....+..++|.  +..++.+.....
T Consensus        83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k-k~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~f  159 (275)
T PF00780_consen   83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVK-KKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKGF  159 (275)
T ss_pred             ccccccccCCeeEEeeccccccceEEEEEEC-CEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCce
Confidence               111122233333  11233444544444 5888877654    2 566777788889999999  345555545567


Q ss_pred             EEEECCCcceeeeeecCCCC-----------ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEE-eecCCCcCEEEEEE
Q 018784          211 KFWDANHFGLVKGYNMPCNT-----------ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG-CNKGHHGPVHCVRF  278 (350)
Q Consensus       211 ~vwd~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~-~~~~h~~~v~~l~~  278 (350)
                      .+.|+.+.....-+......           ....+...++++|++-  |..-.+.|. .|+..+ ........+.++++
T Consensus       160 ~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~~p~~~~~  236 (275)
T PF00780_consen  160 YLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSSAPQSVAY  236 (275)
T ss_pred             EEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcC-CCCcCcccEEEcCCchhEEEE
Confidence            88888765433222111100           1111222223444432  222222232 343322 11122334556666


Q ss_pred             cCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784          279 SPGGESYASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       279 sp~~~~lasgs~Dg~v~vw~~~~~~~~  305 (350)
                      .  .++|+.-..+ .|-||++.+.+..
T Consensus       237 ~--~pyli~~~~~-~iEV~~~~~~~lv  260 (275)
T PF00780_consen  237 S--SPYLIAFSSN-SIEVRSLETGELV  260 (275)
T ss_pred             E--CCEEEEECCC-EEEEEECcCCcEE
Confidence            3  4577766665 4999998776543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.79  E-value=0.0037  Score=60.25  Aligned_cols=216  Identities=15%  Similarity=0.148  Sum_probs=112.0

Q ss_pred             CccEEEEEeCCC------CeeEeeCCCCceee--eccCccCCeEEEEECCCCcEEEEeeCC------CeEEEeeCCCCCe
Q 018784           30 DGFFLVSASKDS------SPMLRNGETGDWIG--TFEGHKGAVWSCCLDANALFSASGSAD------FTAKLWDALTGDE   95 (350)
Q Consensus        30 dg~~lasgs~d~------~v~iw~~~~~~~~~--~l~gH~~~V~~v~~~~~~~~l~s~s~D------g~v~vWd~~~~~~   95 (350)
                      .+.+++.|+.++      ++..+|..++++..  .+..... -.++++ .++.+.++||.|      .++..+|..+++-
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W  361 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRC-RVGVAV-LNGKLYVVGGYDSGSDRLSSVERYDPRTNQW  361 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccc-cccEEE-ECCEEEEEccccCCCcccceEEEecCCCCce
Confidence            456778888774      57789988887654  2332222 223333 356777889888      3566777766541


Q ss_pred             ee--eeeccccEeEEEEcCCCCeEEEeeCCCe-----EEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784           96 KH--SFEHKHIVRACAFSEDTHLLLTGGFEKI-----LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (350)
Q Consensus        96 ~~--~~~h~~~V~~~~~~~~~~~l~sg~~d~~-----v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg  168 (350)
                      ..  .+.....-.+++ .-+|.+.+.||.||.     +..||..+....  ............+...-++.+.+.||.++
T Consensus       362 ~~~a~M~~~R~~~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~--~va~m~~~r~~~gv~~~~g~iYi~GG~~~  438 (571)
T KOG4441|consen  362 TPVAPMNTKRSDFGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWT--PVAPMLTRRSGHGVAVLGGKLYIIGGGDG  438 (571)
T ss_pred             eccCCccCccccceeE-EECCEEEEEeccccccccccEEEecCCCCccc--ccCCCCcceeeeEEEEECCEEEEEcCcCC
Confidence            11  111111101111 225777788888855     667776543322  11211112223332334677777777554


Q ss_pred             ------eEEEEECCCCce--eEeecCCCCeEEEEEecCCcEEEEEcCC-----cEEEEECCCcceeeeeecCCCCceeEe
Q 018784          169 ------GVRLWDARSGKI--VQTLETKSPVTSAEVSRDGRYITTADGS-----SVKFWDANHFGLVKGYNMPCNTESASL  235 (350)
Q Consensus       169 ------~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~  235 (350)
                            ++..||..+.+=  +..+.....-..++...+.-|++++.++     .|..||..+.+....-.+........+
T Consensus       439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~  518 (571)
T KOG4441|consen  439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGV  518 (571)
T ss_pred             CccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccE
Confidence                  577888877642  2222222222223333333344444333     378898877554333222222222222


Q ss_pred             cCCCCcEEEEecCCC
Q 018784          236 EPKLGNIFIAGGEDM  250 (350)
Q Consensus       236 ~~~~~~~l~sg~~d~  250 (350)
                      ..-.+.++++|+.|+
T Consensus       519 ~~~~~~ly~vGG~~~  533 (571)
T KOG4441|consen  519 VVLGGKLYAVGGFDG  533 (571)
T ss_pred             EEECCEEEEEecccC
Confidence            333578889998776

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.78  E-value=0.0063  Score=56.33  Aligned_cols=165  Identities=19%  Similarity=0.184  Sum_probs=97.0

Q ss_pred             CceeeeccCccCCeEEEEECCCCcEEEEe---eCC-CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEE-EeeCCCe
Q 018784           51 GDWIGTFEGHKGAVWSCCLDANALFSASG---SAD-FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL-TGGFEKI  125 (350)
Q Consensus        51 ~~~~~~l~gH~~~V~~v~~~~~~~~l~s~---s~D-g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-sg~~d~~  125 (350)
                      +.....+..-...+..-.|++++..++--   ... ..+.++++.+++....+.-...-..-+|+|+|+.|+ +...|+.
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~  261 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGS  261 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCC
Confidence            33333443333445556788887654322   222 468899999888766666555556678999998776 4556776


Q ss_pred             EEEE--ECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe--EEEEECCCCceeEeec--CCCCeEEEEEecCC
Q 018784          126 LRIF--DLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG--VRLWDARSGKIVQTLE--TKSPVTSAEVSRDG  199 (350)
Q Consensus       126 v~vw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~--i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~  199 (350)
                      ..||  |+.....+ + +-...+.-..-.|+|++..++.+....|.  |.+.|...+.. ..+.  ..... .-.++|||
T Consensus       262 ~~iy~~dl~~~~~~-~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~-~p~~SpdG  337 (425)
T COG0823         262 PDIYLMDLDGKNLP-R-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS-NPVWSPDG  337 (425)
T ss_pred             ccEEEEcCCCCcce-e-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc-CccCCCCC
Confidence            5555  66544422 2 22233333356678888888877766665  55556555443 2222  22222 56689999


Q ss_pred             cEEEEEc--CCc--EEEEECCCcc
Q 018784          200 RYITTAD--GSS--VKFWDANHFG  219 (350)
Q Consensus       200 ~~l~~~~--~~~--i~vwd~~~~~  219 (350)
                      ++++...  ++.  |.+.|+.+..
T Consensus       338 ~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         338 DKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             CEEEEEeccCCceeeEEeccCCCC
Confidence            9886543  444  5556655444

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.71  E-value=0.026  Score=52.55  Aligned_cols=217  Identities=14%  Similarity=0.126  Sum_probs=107.1

Q ss_pred             CeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeec
Q 018784           63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG  142 (350)
Q Consensus        63 ~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~  142 (350)
                      ....+..+|++++++. ..||.-.|+.....+...    .+.-....|.+.+. +|+-...++|+++.--+.........
T Consensus        34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~  107 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKL  107 (443)
T ss_dssp             --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----
T ss_pred             CCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc----cCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcC
Confidence            3567889999999877 667777777633222221    23345677888554 66666688999973221111111111


Q ss_pred             CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCc----
Q 018784          143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHF----  218 (350)
Q Consensus       143 ~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~----  218 (350)
                        ...+..+- .   +.++...+. +.|.+||..+++.+..+.... +..+.|++++.+++......+.+++-...    
T Consensus       108 --~~~~~~If-~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~  179 (443)
T PF04053_consen  108 --PFSVEKIF-G---GNLLGVKSS-DFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYILKYNLEAVAA  179 (443)
T ss_dssp             --SS-EEEEE-----SSSEEEEET-TEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHH
T ss_pred             --CcccceEE-c---CcEEEEECC-CCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEEEEecchhccc
Confidence              11233342 1   444544444 489999999999999998764 89999999999998887778888764332    


Q ss_pred             --------ceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecC
Q 018784          219 --------GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSE  290 (350)
Q Consensus       219 --------~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~  290 (350)
                              .............+..+.   +..|+..+.. .|+.  +-.|+. ..+..-..+++=+.+.|....+.....
T Consensus       180 ~~~~g~e~~f~~~~E~~~~IkSg~W~---~d~fiYtT~~-~lkY--l~~Ge~-~~i~~ld~~~yllgy~~~~~~ly~~Dr  252 (443)
T PF04053_consen  180 IPEEGVEDAFELIHEISERIKSGCWV---EDCFIYTTSN-HLKY--LVNGET-GIIAHLDKPLYLLGYLPKENRLYLIDR  252 (443)
T ss_dssp             BTTTB-GGGEEEEEEE-S--SEEEEE---TTEEEEE-TT-EEEE--EETTEE-EEEEE-SS--EEEEEETTTTEEEEE-T
T ss_pred             ccccCchhceEEEEEecceeEEEEEE---cCEEEEEcCC-eEEE--EEcCCc-ceEEEcCCceEEEEEEccCCEEEEEEC
Confidence                    111111112223333333   2244444433 4444  223322 112222345666777776667777778


Q ss_pred             CCcEEEecCC
Q 018784          291 DGTIRIWQTN  300 (350)
Q Consensus       291 Dg~v~vw~~~  300 (350)
                      |+.|..+.++
T Consensus       253 ~~~v~~~~ld  262 (443)
T PF04053_consen  253 DGNVISYELD  262 (443)
T ss_dssp             T--EEEEE--
T ss_pred             CCCEEEEEEC
Confidence            8888887664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.69  E-value=0.0021  Score=46.85  Aligned_cols=102  Identities=16%  Similarity=0.155  Sum_probs=68.2

Q ss_pred             EEEEEEeC---CCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeee
Q 018784          148 IRTVAWLH---SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY  224 (350)
Q Consensus       148 v~~~~~~~---~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~  224 (350)
                      |.++++++   ++..-|+.|++|..||+|+-  .+.+..+.....+++++-...+++..+-.+|+|-+|+....  +...
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R--lWRi   77 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQR--LWRI   77 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcce--eeee
Confidence            44555443   34467888999999999973  47788888889999999888888888888999988875332  1111


Q ss_pred             ecCCCCceeEecCC---CCcEEEEecCCCeEE
Q 018784          225 NMPCNTESASLEPK---LGNIFIAGGEDMWVH  253 (350)
Q Consensus       225 ~~~~~~~~~~~~~~---~~~~l~sg~~d~~i~  253 (350)
                      .......+..+...   .-.-|++|..+|.|-
T Consensus        78 KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   78 KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            11222233322221   124688888888764

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.66  E-value=0.00074  Score=61.70  Aligned_cols=143  Identities=14%  Similarity=0.185  Sum_probs=98.7

Q ss_pred             CCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcE--------EEEEcCCcEEEEECCCcce-----ee
Q 018784          156 SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRY--------ITTADGSSVKFWDANHFGL-----VK  222 (350)
Q Consensus       156 ~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~--------l~~~~~~~i~vwd~~~~~~-----~~  222 (350)
                      ....++.++.....++--|++.|+.+..+..+..|+-+.+.|+.+.        +++-++..|.=||+|-...     .+
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q  423 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ  423 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence            3445566777767899999999999999998887888888887643        3444677888899884332     11


Q ss_pred             eeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeE-EeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          223 GYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI-GCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~-~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      ...........++......++++||.+|.|++||- .+... ..+.+...+|..+..+.+|++++..+ +..+.|-++.
T Consensus       424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence            11122222222333334578999999999999997 44433 34568889999999999999876544 4466666553

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.65  E-value=0.0015  Score=64.23  Aligned_cols=143  Identities=13%  Similarity=0.191  Sum_probs=93.4

Q ss_pred             CCCcEEEE-EeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCC--------cEEEEEcCCcEEEEECCCcc--eeee-
Q 018784          156 SDQTILSS-CTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDG--------RYITTADGSSVKFWDANHFG--LVKG-  223 (350)
Q Consensus       156 ~~~~~~~s-~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~--------~~l~~~~~~~i~vwd~~~~~--~~~~-  223 (350)
                      .+..+++. ..+...|+-.|++.|+.+..+..+..+.-..+.|+.        ..+++-++..+..||+|-..  ++.. 
T Consensus       491 ~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~  570 (794)
T PF08553_consen  491 QDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ  570 (794)
T ss_pred             cccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence            34455444 345578999999999999999876544334444432        34566678889999998643  3321 


Q ss_pred             -eecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEE-eecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          224 -YNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG-CNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       224 -~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~-~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                       ..........++......++|+|+.+|.||+||- .|.... .+.+-..+|..|..+.||++++..+. ..|.|+++.
T Consensus       571 ~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t~  647 (794)
T PF08553_consen  571 SKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDTL  647 (794)
T ss_pred             ccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEEe
Confidence             1111222222223334578999999999999994 343332 34577899999999999999775554 467777653

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.64  E-value=0.028  Score=47.24  Aligned_cols=136  Identities=13%  Similarity=0.059  Sum_probs=87.3

Q ss_pred             CCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEE
Q 018784           72 NALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV  151 (350)
Q Consensus        72 ~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~  151 (350)
                      ...+++-||..+.++--|..+++......-...+.+-+.- -|.+++.|...+.+.+-+..++.+........  .|..-
T Consensus        22 skT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~--~vk~~   98 (354)
T KOG4649|consen   22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE--TVKVR   98 (354)
T ss_pred             CceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh--hhccc
Confidence            3556677788888888888877766544333333332222 46678999999999999988775543332211  22222


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCe-EEEEEec-CCcEEEEEcCCcE
Q 018784          152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPV-TSAEVSR-DGRYITTADGSSV  210 (350)
Q Consensus       152 ~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v-~~~~~~~-~~~~l~~~~~~~i  210 (350)
                      +-...+..++..++.|++....|.++..++...+....+ .+-++.| ++.+.++...|.+
T Consensus        99 a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v  159 (354)
T KOG4649|consen   99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV  159 (354)
T ss_pred             eEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence            223456678888999999999999999998887765443 2334555 5666555554443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.60  E-value=0.011  Score=52.86  Aligned_cols=131  Identities=20%  Similarity=0.299  Sum_probs=86.1

Q ss_pred             CeEEEEECCCC-------ceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcc-eeeeeecCCCCceeEecCCC
Q 018784          168 GGVRLWDARSG-------KIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFG-LVKGYNMPCNTESASLEPKL  239 (350)
Q Consensus       168 g~i~iwd~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~  239 (350)
                      |.|.++++...       +.+.......+|++++-. +++ ++++.++.|.+|++.... ..+.-.........++.. .
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~-~  138 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV-F  138 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE-E
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEec-c
Confidence            78999999874       233444557888888766 445 666777899999987776 444433333333333333 2


Q ss_pred             CcEEEEecCCCeEEEEEccc-CeeEEee--cCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784          240 GNIFIAGGEDMWVHVFDFHT-GEQIGCN--KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       240 ~~~l~sg~~d~~i~v~d~~~-~~~~~~~--~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~  301 (350)
                      ++++++|..-+.+.++.++. ...+..+  .....+++++.|-+++..++.+..+|.|.++..++
T Consensus       139 ~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  139 KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            56888998888888876554 2322222  23456789999987767899999999999998864

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.58  E-value=0.00036  Score=67.02  Aligned_cols=140  Identities=16%  Similarity=0.233  Sum_probs=97.2

Q ss_pred             EEEecCCcEEEEE-----cCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec
Q 018784          193 AEVSRDGRYITTA-----DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK  267 (350)
Q Consensus       193 ~~~~~~~~~l~~~-----~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~  267 (350)
                      ..|+|..-+++.+     .+|.|.||- .++.+-+..+.|.+..+.+++|. .-+|+.|..-|.+.+|...+.+......
T Consensus        21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe-~~vLa~gwe~g~~~v~~~~~~e~htv~~   98 (1416)
T KOG3617|consen   21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPE-EFVLAQGWEMGVSDVQKTNTTETHTVVE   98 (1416)
T ss_pred             cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChH-HHHHhhccccceeEEEecCCceeeeecc
Confidence            4466665555433     467888884 33445455555666666777763 4678888899999999988777776777


Q ss_pred             CCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccchhHhhh
Q 018784          268 GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKAEEKQ  345 (350)
Q Consensus       268 ~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~  345 (350)
                      .|..+|.-+.|||+|..|+|+..=|.|.+|.++.......        +.-+.-...++.. ..+|.+++|  .||.+
T Consensus        99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~--------~~~~~hel~~~lt-l~cfRL~~~--~Ee~~  165 (1416)
T KOG3617|consen   99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQT--------SNIMQHELNDQLT-LWCFRLSYD--REEKF  165 (1416)
T ss_pred             CCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecccccc--------chhhhhHhhceee-EEEEecCCC--hHHhh
Confidence            8999999999999999999999999999999874322111        1122222344444 478888888  45555

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.58  E-value=0.035  Score=50.93  Aligned_cols=236  Identities=17%  Similarity=0.163  Sum_probs=124.0

Q ss_pred             CeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCee-------------------------ee------------------e
Q 018784           63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEK-------------------------HS------------------F   99 (350)
Q Consensus        63 ~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~-------------------------~~------------------~   99 (350)
                      .|..+.|.++..-|+.|-..|.|.||.....+..                         ..                  +
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            3667777777666677777888888753221100                         00                  0


Q ss_pred             -eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee-------ecCCCCcEEEEEEe----CCCC---cEEEEE
Q 018784          100 -EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE-------VGNSSGSIRTVAWL----HSDQ---TILSSC  164 (350)
Q Consensus       100 -~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~-------~~~~~~~v~~~~~~----~~~~---~~~~s~  164 (350)
                       ...+.|.+++.+.- .+++.|..+|.+.|.|++.+......       .......++++.|.    ..|.   .++..|
T Consensus        83 ~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence             03467899998744 48899999999999999765433221       11234456777665    3333   567788


Q ss_pred             eCCCeEEEEECC--C-Cc----eeEee-cCCCCeEEEE-EecC-----------------C----cEEEEEcCCcEEEEE
Q 018784          165 TDSGGVRLWDAR--S-GK----IVQTL-ETKSPVTSAE-VSRD-----------------G----RYITTADGSSVKFWD  214 (350)
Q Consensus       165 ~~dg~i~iwd~~--~-~~----~~~~~-~~~~~v~~~~-~~~~-----------------~----~~l~~~~~~~i~vwd  214 (350)
                      .+.|.+.+|.+-  . +.    ..... ....++..+. ++.+                 +    -+++..+...+|++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~  241 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK  241 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence            888999999764  2 21    11111 2345555544 2211                 1    255666778899999


Q ss_pred             CCCcceeeeeecC-CCCceeEec----CCCCcEEEEecCCCeEEEEEcccCeeEEeecCCC----cCEEEEEEcCCCCEE
Q 018784          215 ANHFGLVKGYNMP-CNTESASLE----PKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHH----GPVHCVRFSPGGESY  285 (350)
Q Consensus       215 ~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~----~~v~~l~~sp~~~~l  285 (350)
                      ..+.+......-. .....+.+.    ...+..|++=..+|.|++|.+-..+++.......    ..+....++++|..+
T Consensus       242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~  321 (395)
T PF08596_consen  242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIF  321 (395)
T ss_dssp             TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EE
T ss_pred             CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEE
Confidence            8876655433311 111122221    1235667777889999999998888876665432    234556778888877


Q ss_pred             EEecCC--CcEEEecC
Q 018784          286 ASGSED--GTIRIWQT  299 (350)
Q Consensus       286 asgs~D--g~v~vw~~  299 (350)
                      +-.|..  ..+.+|..
T Consensus       322 ~~~gpsE~~l~sv~~~  337 (395)
T PF08596_consen  322 YWTGPSEIQLFSVWGE  337 (395)
T ss_dssp             EE-SSSEEEEEEEES-
T ss_pred             EEeCcccEEEEEEEcc
Confidence            654433  23455543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.57  E-value=0.0059  Score=56.75  Aligned_cols=148  Identities=21%  Similarity=0.284  Sum_probs=81.2

Q ss_pred             eeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCc
Q 018784          139 REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHF  218 (350)
Q Consensus       139 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~  218 (350)
                      +..+...-.+..+.++|.+. +++.++ ||.-.++.....+....    +.....+|.+.+++++......|.++.--+.
T Consensus        26 k~lg~~~~~p~~ls~npngr-~v~V~g-~geY~iyt~~~~r~k~~----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~   99 (443)
T PF04053_consen   26 KELGSCEIYPQSLSHNPNGR-FVLVCG-DGEYEIYTALAWRNKAF----GSGLSFVWSSRNRYAVLESSSTIKIYKNFKN   99 (443)
T ss_dssp             EEEEE-SS--SEEEE-TTSS-EEEEEE-TTEEEEEETTTTEEEEE----EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE
T ss_pred             ccCCCCCcCCeeEEECCCCC-EEEEEc-CCEEEEEEccCCccccc----CceeEEEEecCccEEEEECCCeEEEEEcCcc
Confidence            34445555577888876555 444454 47777777443333222    3345677888888887777788999733222


Q ss_pred             ceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          219 GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      ...+.+..+..  .-.+..  |.+|...+.+ .|.+||+.+++.++.+...  +|..+.|++++.++|-.+.+ .+.|++
T Consensus       100 ~~~k~i~~~~~--~~~If~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~  171 (443)
T PF04053_consen  100 EVVKSIKLPFS--VEKIFG--GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILK  171 (443)
T ss_dssp             -TT-----SS---EEEEE---SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred             ccceEEcCCcc--cceEEc--CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence            22223333321  111222  6777776655 8999999999999887643  38999999999999888766 788877


Q ss_pred             CC
Q 018784          299 TN  300 (350)
Q Consensus       299 ~~  300 (350)
                      .+
T Consensus       172 ~~  173 (443)
T PF04053_consen  172 YN  173 (443)
T ss_dssp             E-
T ss_pred             ec
Confidence            54

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.51  E-value=0.076  Score=48.79  Aligned_cols=214  Identities=13%  Similarity=0.116  Sum_probs=139.1

Q ss_pred             EEEECCCCc-EEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeC---CCeEEEEECCCCCCCCeee
Q 018784           66 SCCLDANAL-FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF---EKILRIFDLNRPDAPPREV  141 (350)
Q Consensus        66 ~v~~~~~~~-~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~---d~~v~vwd~~~~~~~~~~~  141 (350)
                      .+++++.+. ..+....+..|.+.|..+........-......++++|+++.++.+..   ++++.+.|..+...... .
T Consensus        78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~  156 (381)
T COG3391          78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-I  156 (381)
T ss_pred             ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-E
Confidence            556777666 666667789999999877777776655557889999999988877655   68888888765443333 2


Q ss_pred             cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeE-e----ecCCCCeEEEEEecCCcEEEEEcC----CcEEE
Q 018784          142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ-T----LETKSPVTSAEVSRDGRYITTADG----SSVKF  212 (350)
Q Consensus       142 ~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~-~----~~~~~~v~~~~~~~~~~~l~~~~~----~~i~v  212 (350)
                      ..... ...+++.+.+..++++-..++.|.+.|........ .    ......-..+.++++|..+....+    +.+..
T Consensus       157 ~vG~~-P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~  235 (381)
T COG3391         157 PVGNT-PTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLK  235 (381)
T ss_pred             ecCCC-cceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEE
Confidence            21112 26778887777777777788999999977665553 1    222233456789999986655432    47888


Q ss_pred             EECCCcceeee-eecCC-CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCC---CcCEEEEEEcCC
Q 018784          213 WDANHFGLVKG-YNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGH---HGPVHCVRFSPG  281 (350)
Q Consensus       213 wd~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h---~~~v~~l~~sp~  281 (350)
                      .|..+...... ..... ........|......+.-...+.+.+.|..+..........   ...+..+++.+.
T Consensus       236 id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~  309 (381)
T COG3391         236 IDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL  309 (381)
T ss_pred             EeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence            88887665543 22222 23445555643344444455688999998887766554322   234566666654

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.49  E-value=0.08  Score=48.63  Aligned_cols=255  Identities=15%  Similarity=0.162  Sum_probs=150.4

Q ss_pred             eeEeeCCCCceeeeccCccCCeEEEEECCCCc-E-EEEeeCCCeEEEeeCCCCCeeeeeecc-ccEeEEEEcCCCCeEE-
Q 018784           43 PMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-F-SASGSADFTAKLWDALTGDEKHSFEHK-HIVRACAFSEDTHLLL-  118 (350)
Q Consensus        43 v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~-~-l~s~s~Dg~v~vWd~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~-  118 (350)
                      +.+++..+.+....+.-+. ....+...+++. . .+....+ .+..-+...........-. .....++.++.+..++ 
T Consensus        13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~-~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv   90 (381)
T COG3391          13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSN-DVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYV   90 (381)
T ss_pred             eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCc-eeeecccccceeeeeccCCCccccceeeCCCCCeEEE
Confidence            4444444444433333222 223456666663 2 2333333 5555554422111111111 3356778888887554 


Q ss_pred             EeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe--CCCeEEEEECCCCceeEeecCC-CCeEEEEE
Q 018784          119 TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT--DSGGVRLWDARSGKIVQTLETK-SPVTSAEV  195 (350)
Q Consensus       119 sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~--~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~  195 (350)
                      ....+..|.+.|............  ......+++.+.++.+.++-.  .++++.+.|..+.+........ .+ ..+++
T Consensus        91 ~~~~~~~v~vid~~~~~~~~~~~v--G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~  167 (381)
T COG3391          91 TTGDSNTVSVIDTATNTVLGSIPV--GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAV  167 (381)
T ss_pred             ecCCCCeEEEEcCcccceeeEeee--ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEE
Confidence            445568999999654332221111  125567788887777777766  4689999999999888775543 34 78999


Q ss_pred             ecCCcEEEEEc--CCcEEEEECCCcceee-----eeecCCCCceeEecCCCCcEEEEecCC--CeEEEEEcccCeeEEee
Q 018784          196 SRDGRYITTAD--GSSVKFWDANHFGLVK-----GYNMPCNTESASLEPKLGNIFIAGGED--MWVHVFDFHTGEQIGCN  266 (350)
Q Consensus       196 ~~~~~~l~~~~--~~~i~vwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~sg~~d--~~i~v~d~~~~~~~~~~  266 (350)
                      +|+|..+...+  ++.|.+.|.......+     .......+....+.+.....+++....  +.+...|..++......
T Consensus       168 ~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~  247 (381)
T COG3391         168 DPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATD  247 (381)
T ss_pred             CCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEec
Confidence            99998665544  7889999977655443     112222334455555433344444443  68888888887766542


Q ss_pred             c--CCCcCEEEEEEcCCCCEEEEe-cCCCcEEEecCCCCC
Q 018784          267 K--GHHGPVHCVRFSPGGESYASG-SEDGTIRIWQTNPPN  303 (350)
Q Consensus       267 ~--~h~~~v~~l~~sp~~~~lasg-s~Dg~v~vw~~~~~~  303 (350)
                      .  +-. ....+.++|+|..+... +..+.+.+-|.....
T Consensus       248 ~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         248 LPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             cccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence            1  222 45678999999887665 445788888876543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.49  E-value=0.023  Score=54.87  Aligned_cols=218  Identities=19%  Similarity=0.216  Sum_probs=113.9

Q ss_pred             CCCcEEEEeeCC------CeEEEeeCCCCCeee--eeeccccEeEEEEcCCCCeEEEeeCC------CeEEEEECCCCCC
Q 018784           71 ANALFSASGSAD------FTAKLWDALTGDEKH--SFEHKHIVRACAFSEDTHLLLTGGFE------KILRIFDLNRPDA  136 (350)
Q Consensus        71 ~~~~~l~s~s~D------g~v~vWd~~~~~~~~--~~~h~~~V~~~~~~~~~~~l~sg~~d------~~v~vwd~~~~~~  136 (350)
                      ..+.+++.||.+      .++..+|..++.-..  .+..+....+++.. ++.+.++||.|      .++..||....+.
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W  361 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW  361 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence            345566777777      467788877663222  22233333344444 44677888888      3467778765442


Q ss_pred             CCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC-----eEEEEECCCCceeEeecCCCCeEEEE-EecCCcEEEE-EcC--
Q 018784          137 PPREVGNSSGSIRTVAWLHSDQTILSSCTDSG-----GVRLWDARSGKIVQTLETKSPVTSAE-VSRDGRYITT-ADG--  207 (350)
Q Consensus       137 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~-~~~--  207 (350)
                      ...........-..++  .-++.+.+.||.||     ++..||.++.+=-............. ..-+|++.+. +.+  
T Consensus       362 ~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~  439 (571)
T KOG4441|consen  362 TPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGS  439 (571)
T ss_pred             eccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCC
Confidence            2111111111111122  22677888888885     47788887654211111111222222 2235555444 322  


Q ss_pred             ----CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCC-----eEEEEEcccCe--eEEeecCCCcCEEEE
Q 018784          208 ----SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM-----WVHVFDFHTGE--QIGCNKGHHGPVHCV  276 (350)
Q Consensus       208 ----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~-----~i~v~d~~~~~--~~~~~~~h~~~v~~l  276 (350)
                          ..+..||..+......-.+............++.+++.|+.|+     +|..||..+.+  .+.........+..+
T Consensus       440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~  519 (571)
T KOG4441|consen  440 SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV  519 (571)
T ss_pred             ccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE
Confidence                3588899887655443333333222223333578999999876     36778876533  332222223333333


Q ss_pred             EEcCCCCEEEEecCCCc
Q 018784          277 RFSPGGESYASGSEDGT  293 (350)
Q Consensus       277 ~~sp~~~~lasgs~Dg~  293 (350)
                      ..  ++..++.|+.||.
T Consensus       520 ~~--~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  520 VL--GGKLYAVGGFDGN  534 (571)
T ss_pred             EE--CCEEEEEecccCc
Confidence            33  5677889998874

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.47  E-value=0.053  Score=48.55  Aligned_cols=207  Identities=18%  Similarity=0.267  Sum_probs=112.0

Q ss_pred             eEEEeeCCCCCeeeee--eccccEeE---EEEcCC----CCeEEEeeC----------CCeEEEEECCCC-----CCCCe
Q 018784           84 TAKLWDALTGDEKHSF--EHKHIVRA---CAFSED----THLLLTGGF----------EKILRIFDLNRP-----DAPPR  139 (350)
Q Consensus        84 ~v~vWd~~~~~~~~~~--~h~~~V~~---~~~~~~----~~~l~sg~~----------d~~v~vwd~~~~-----~~~~~  139 (350)
                      .|++.|..+.+.+..+  ...+.+.+   +.|..+    ..+|+.|..          .|.|.++++.+.     .....
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            5788888777765544  33344444   444443    466776642          288999999763     11111


Q ss_pred             eecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCc-eeEeec--CCCCeEEEEEecCCcEEEEEc-CCcEEEE--
Q 018784          140 EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK-IVQTLE--TKSPVTSAEVSRDGRYITTAD-GSSVKFW--  213 (350)
Q Consensus       140 ~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~-~~~~~~--~~~~v~~~~~~~~~~~l~~~~-~~~i~vw--  213 (350)
                      ......+.|++++-.  ++.++++.+  +.|.+|++...+ ......  .+..+.++....  .+++.++ -..+.++  
T Consensus        83 ~~~~~~g~V~ai~~~--~~~lv~~~g--~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~--~~I~vgD~~~sv~~~~~  156 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF--NGRLVVAVG--NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFK--NYILVGDAMKSVSLLRY  156 (321)
T ss_dssp             EEEEESS-EEEEEEE--TTEEEEEET--TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEET--TEEEEEESSSSEEEEEE
T ss_pred             EEEeecCcceEhhhh--CCEEEEeec--CEEEEEEccCcccchhhheecceEEEEEEeccc--cEEEEEEcccCEEEEEE
Confidence            223457889999876  445555443  689999998776 443333  344566665553  3555554 4555554  


Q ss_pred             ECCCcceee--eeecCCCCceeEecCCCCcEEEEecCCCeEEEEEccc-------Ce--eEEeecCC-CcCEEEE---EE
Q 018784          214 DANHFGLVK--GYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT-------GE--QIGCNKGH-HGPVHCV---RF  278 (350)
Q Consensus       214 d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~-------~~--~~~~~~~h-~~~v~~l---~~  278 (350)
                      +........  .-..+.....+.+-... +.++.+..+|.+.++....       +.  ......-| ...|+++   ++
T Consensus       157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l  235 (321)
T PF03178_consen  157 DEENNKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL  235 (321)
T ss_dssp             ETTTE-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred             EccCCEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence            553322221  11112222333343233 5899999999999998752       22  22222222 4567777   55


Q ss_pred             cC--CC------CEEEEecCCCcEEEe
Q 018784          279 SP--GG------ESYASGSEDGTIRIW  297 (350)
Q Consensus       279 sp--~~------~~lasgs~Dg~v~vw  297 (350)
                      .|  .+      ..++-++.+|.|.+.
T Consensus       236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  236 IPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             S--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             eecCCCCcccccceEEEEecCCEEEEE
Confidence            55  22      247778889988843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PHA02713 hypothetical protein; Provisional

Probab=97.46  E-value=0.012  Score=56.90  Aligned_cols=214  Identities=11%  Similarity=0.006  Sum_probs=101.6

Q ss_pred             CeeEeeCCCCceee--eccCccCCeEEEEECCCCcEEEEeeCC------CeEEEeeCCCCCeee--eeeccccEeEEEEc
Q 018784           42 SPMLRNGETGDWIG--TFEGHKGAVWSCCLDANALFSASGSAD------FTAKLWDALTGDEKH--SFEHKHIVRACAFS  111 (350)
Q Consensus        42 ~v~iw~~~~~~~~~--~l~gH~~~V~~v~~~~~~~~l~s~s~D------g~v~vWd~~~~~~~~--~~~h~~~V~~~~~~  111 (350)
                      .+..||..+.++..  .+...... .+++. .++.+.+.||.+      ..+..+|..+..-..  .+.....-.++ ..
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~-~~  349 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSL-AV  349 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeE-EE
Confidence            46778888877653  22211111 12222 356666777754      346677766553211  11111111112 22


Q ss_pred             CCCCeEEEeeCCC-----eEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC-------------------
Q 018784          112 EDTHLLLTGGFEK-----ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-------------------  167 (350)
Q Consensus       112 ~~~~~l~sg~~d~-----~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-------------------  167 (350)
                      -++++.+.||.++     ++..||..+..............-.+++.  -++.+.+.|+.+                   
T Consensus       350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~  427 (557)
T PHA02713        350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEED  427 (557)
T ss_pred             ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccc
Confidence            3566777787653     47889876532211000001000011111  246666666654                   


Q ss_pred             ----CeEEEEECCCCc--eeEeecCCCCeEEEEEecCCcEEEE-EcC------CcEEEEECCC-cceeeeeecCCCCcee
Q 018784          168 ----GGVRLWDARSGK--IVQTLETKSPVTSAEVSRDGRYITT-ADG------SSVKFWDANH-FGLVKGYNMPCNTESA  233 (350)
Q Consensus       168 ----g~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~-~~~------~~i~vwd~~~-~~~~~~~~~~~~~~~~  233 (350)
                          .++..||+++.+  .+..+.... .......-++++.+. +.+      ..+..||..+ .+-...-.++......
T Consensus       428 ~~~~~~ve~YDP~td~W~~v~~m~~~r-~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~  506 (557)
T PHA02713        428 THSSNKVIRYDTVNNIWETLPNFWTGT-IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL  506 (557)
T ss_pred             ccccceEEEECCCCCeEeecCCCCccc-ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence                247778877653  122221111 111122334554443 322      2467899886 3433323333333223


Q ss_pred             EecCCCCcEEEEecCCC--eEEEEEcccCe
Q 018784          234 SLEPKLGNIFIAGGEDM--WVHVFDFHTGE  261 (350)
Q Consensus       234 ~~~~~~~~~l~sg~~d~--~i~v~d~~~~~  261 (350)
                      ....-++.+++.|+.++  .+..||..+.+
T Consensus       507 ~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~  536 (557)
T PHA02713        507 HTILHDNTIMMLHCYESYMLQDTFNVYTYE  536 (557)
T ss_pred             eeEEECCEEEEEeeecceeehhhcCccccc
Confidence            22233578999999888  67777766543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.45  E-value=0.0061  Score=57.72  Aligned_cols=120  Identities=21%  Similarity=0.225  Sum_probs=88.4

Q ss_pred             ccC-ccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee--ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCC
Q 018784           57 FEG-HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR  133 (350)
Q Consensus        57 l~g-H~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~--h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~  133 (350)
                      +.+ |...|.=-+++..+.+++-|+.-|.+.+++-..+..+..-+  ....+..+..+++..++|.|+..+.|.++.+..
T Consensus        28 ~~~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~  107 (726)
T KOG3621|consen   28 QPGFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK  107 (726)
T ss_pred             ccccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence            444 44555555678889999999999999999987766444332  334556677899999999999999999998876


Q ss_pred             CCCCCe-----eecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCC
Q 018784          134 PDAPPR-----EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS  177 (350)
Q Consensus       134 ~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~  177 (350)
                      ...+..     ....|+..|++++|++ +...+.+|..-|+|.+-.+.+
T Consensus       108 ~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  108 ELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEech
Confidence            322211     1234688999999986 455677888889999887776

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.44  E-value=0.099  Score=48.61  Aligned_cols=233  Identities=15%  Similarity=0.142  Sum_probs=115.9

Q ss_pred             ccCCCccEEEEE-eCCCC----eeEeeCCCCceeee-ccCccCCeEEEEECCCCcEEEEeeCC-----------CeEEEe
Q 018784           26 PITPDGFFLVSA-SKDSS----PMLRNGETGDWIGT-FEGHKGAVWSCCLDANALFSASGSAD-----------FTAKLW   88 (350)
Q Consensus        26 ~~s~dg~~lasg-s~d~~----v~iw~~~~~~~~~~-l~gH~~~V~~v~~~~~~~~l~s~s~D-----------g~v~vW   88 (350)
                      .++|||++||-+ +..|.    +++.|+++++.+.. +..- . -..+.|.+++..|+-...|           ..|+.|
T Consensus       130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~  207 (414)
T PF02897_consen  130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-K-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH  207 (414)
T ss_dssp             EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-E-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred             eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-c-cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence            355699888744 44444    89999999977653 2221 1 1238999997765444333           337888


Q ss_pred             eCCCCCee--eeeec--ccc-EeEEEEcCCCCeEEEee---CC-CeEEEEECCCC---CCCCeeec-CCCCcEEEEEEeC
Q 018784           89 DALTGDEK--HSFEH--KHI-VRACAFSEDTHLLLTGG---FE-KILRIFDLNRP---DAPPREVG-NSSGSIRTVAWLH  155 (350)
Q Consensus        89 d~~~~~~~--~~~~h--~~~-V~~~~~~~~~~~l~sg~---~d-~~v~vwd~~~~---~~~~~~~~-~~~~~v~~~~~~~  155 (350)
                      .+.+....  ..+..  ... ...+..++++++|+..+   .+ ..+.+.++...   ......+. ...+....+... 
T Consensus       208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-  286 (414)
T PF02897_consen  208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-  286 (414)
T ss_dssp             ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-
T ss_pred             ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-
Confidence            88776533  33432  223 56788899999876432   22 44677787653   22233332 233444444433 


Q ss_pred             CCCcEE-EEE--eCCCeEEEEECCCCce---eEeecC-CC--CeEEEEEecCCcEEEEEcCC--cEEEEECCCcceeeee
Q 018784          156 SDQTIL-SSC--TDSGGVRLWDARSGKI---VQTLET-KS--PVTSAEVSRDGRYITTADGS--SVKFWDANHFGLVKGY  224 (350)
Q Consensus       156 ~~~~~~-~s~--~~dg~i~iwd~~~~~~---~~~~~~-~~--~v~~~~~~~~~~~l~~~~~~--~i~vwd~~~~~~~~~~  224 (350)
                       ++.++ .+.  ...+.|.-.++.+...   ...+.. ..  .+..+....+..++..-.++  .|+++|+.........
T Consensus       287 -~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~  365 (414)
T PF02897_consen  287 -GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREI  365 (414)
T ss_dssp             -TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEE
T ss_pred             -CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeee
Confidence             34333 332  1225666677766542   212222 22  24444443332222223343  6899999833444444


Q ss_pred             ecCCCCceeEe--cCCCCcEEEEecC---CCeEEEEEcccCee
Q 018784          225 NMPCNTESASL--EPKLGNIFIAGGE---DMWVHVFDFHTGEQ  262 (350)
Q Consensus       225 ~~~~~~~~~~~--~~~~~~~l~sg~~---d~~i~v~d~~~~~~  262 (350)
                      ..+........  ......+++.-+.   -..++.||+.+++.
T Consensus       366 ~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  366 PLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             ESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             cCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            44433321222  2222333333222   34667777776654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PHA02713 hypothetical protein; Provisional

Probab=97.31  E-value=0.03  Score=54.11  Aligned_cols=211  Identities=11%  Similarity=0.081  Sum_probs=99.5

Q ss_pred             eEEEeeCCCCCeee--eeeccccEeEEEEcCCCCeEEEeeCC------CeEEEEECCCCCCCCeeecCCCCcEEEEEEeC
Q 018784           84 TAKLWDALTGDEKH--SFEHKHIVRACAFSEDTHLLLTGGFE------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLH  155 (350)
Q Consensus        84 ~v~vWd~~~~~~~~--~~~h~~~V~~~~~~~~~~~l~sg~~d------~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  155 (350)
                      .+..||..+++-..  .+.....-.+++. -++.+.+.||.+      ..+..||+.+............-.-.+++.  
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~--  349 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV--  349 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE--
Confidence            56777876654221  1111111112222 356667777754      346778876432211000000000112222  


Q ss_pred             CCCcEEEEEeCCC-----eEEEEECCCCc--eeEeecCCCCeEEEEEecCCcEEEEE-cC--------------------
Q 018784          156 SDQTILSSCTDSG-----GVRLWDARSGK--IVQTLETKSPVTSAEVSRDGRYITTA-DG--------------------  207 (350)
Q Consensus       156 ~~~~~~~s~~~dg-----~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~-~~--------------------  207 (350)
                      -++.+.+.||.++     ++..||+++.+  .+..+.....-..+ ..-++++.+.+ .+                    
T Consensus       350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~-~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGM-CVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccE-EEECCEEEEEeCCCcccccccccccccccccccc
Confidence            2566767676653     48889987653  11111111111112 22345554433 22                    


Q ss_pred             ---CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCC------CeEEEEEccc---CeeEEeecCCCcCEEE
Q 018784          208 ---SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED------MWVHVFDFHT---GEQIGCNKGHHGPVHC  275 (350)
Q Consensus       208 ---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d------~~i~v~d~~~---~~~~~~~~~h~~~v~~  275 (350)
                         ..+..||..+..-...-.++..........-.+++++.|+.+      ..+..||..+   ...+..+.........
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~  508 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT  508 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence               247778877654332222222211112222247888888864      2467898775   3344433332222333


Q ss_pred             EEEcCCCCEEEEecCCC--cEEEecCC
Q 018784          276 VRFSPGGESYASGSEDG--TIRIWQTN  300 (350)
Q Consensus       276 l~~sp~~~~lasgs~Dg--~v~vw~~~  300 (350)
                      +.+  ++++++.|+.|+  .+-.||..
T Consensus       509 ~~~--~~~iyv~Gg~~~~~~~e~yd~~  533 (557)
T PHA02713        509 ILH--DNTIMMLHCYESYMLQDTFNVY  533 (557)
T ss_pred             EEE--CCEEEEEeeecceeehhhcCcc
Confidence            334  678899999998  55555543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.29  E-value=0.078  Score=45.30  Aligned_cols=191  Identities=14%  Similarity=0.182  Sum_probs=104.1

Q ss_pred             ccEeEEEEcCCCC-eEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCc--
Q 018784          103 HIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK--  179 (350)
Q Consensus       103 ~~V~~~~~~~~~~-~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~--  179 (350)
                      ..+..++|.|+.. ++++....+.|...++. ++...+......+-.-.+++.. ++.++++--.++.+.+.++....  
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~~~   99 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDTTS   99 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----TT
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEeccccc
Confidence            3489999999755 55566667777777764 3332222223345577788764 45666666668899998883321  


Q ss_pred             ----eeEeec------CCCCeEEEEEecCCc-EEEEEcCCcEEEEECCC---cceeeee-----e----cCCCCceeEec
Q 018784          180 ----IVQTLE------TKSPVTSAEVSRDGR-YITTADGSSVKFWDANH---FGLVKGY-----N----MPCNTESASLE  236 (350)
Q Consensus       180 ----~~~~~~------~~~~v~~~~~~~~~~-~l~~~~~~~i~vwd~~~---~~~~~~~-----~----~~~~~~~~~~~  236 (350)
                          ....+.      .+..+..+++++.+. ++++-...-.++|..+.   .......     .    .-.....+.+.
T Consensus       100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~  179 (248)
T PF06977_consen  100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYD  179 (248)
T ss_dssp             --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred             cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEc
Confidence                112222      234688999999754 44444444555655443   1111000     0    11234556778


Q ss_pred             CCCCcEEEEecCCCeEEEEEcccCeeEEeec---CCC------cCEEEEEEcCCCCEEEEecCCCcEEEe
Q 018784          237 PKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK---GHH------GPVHCVRFSPGGESYASGSEDGTIRIW  297 (350)
Q Consensus       237 ~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~---~h~------~~v~~l~~sp~~~~lasgs~Dg~v~vw  297 (350)
                      +..+++++.....+.|..+| .+|+.+..+.   +..      .....|+|.++|+++++ |+-+..+++
T Consensus       180 p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  180 PRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             TTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             CCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence            88899999999999999999 6677655432   211      24788999999976654 455555544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.28  E-value=0.093  Score=44.80  Aligned_cols=190  Identities=17%  Similarity=0.210  Sum_probs=111.5

Q ss_pred             eeeeeccc--cEeEEEEcCCCCeEEEeeCCC--eEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEE
Q 018784           96 KHSFEHKH--IVRACAFSEDTHLLLTGGFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (350)
Q Consensus        96 ~~~~~h~~--~V~~~~~~~~~~~l~sg~~d~--~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~  171 (350)
                      +.++.|..  ....+.|..++.++-+.|.-|  .|+.+|+.+++..........---..++..  ++.+..---.+++..
T Consensus        36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f  113 (264)
T PF05096_consen   36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGF  113 (264)
T ss_dssp             EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEE
T ss_pred             EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEE
Confidence            44556653  457888877888888877655  689999987653322221111111223322  233433346778999


Q ss_pred             EEECCCCceeEeecCCCCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceeeeeecCCCCcee----EecCCCCcEEEEe
Q 018784          172 LWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTESA----SLEPKLGNIFIAG  246 (350)
Q Consensus       172 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~sg  246 (350)
                      +||..+.+.+.++.....=..++  .+++.|..++ ...+.++|..+++..+..........+    -+.--+|.++|=-
T Consensus       114 ~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANV  191 (264)
T PF05096_consen  114 VYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANV  191 (264)
T ss_dssp             EEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEE
T ss_pred             EEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEe
Confidence            99999999888887766555555  4455555554 468999999998887776654322111    1111246777777


Q ss_pred             cCCCeEEEEEcccCeeEEeec------------CC---CcCEEEEEEcCCC-CEEEEec
Q 018784          247 GEDMWVHVFDFHTGEQIGCNK------------GH---HGPVHCVRFSPGG-ESYASGS  289 (350)
Q Consensus       247 ~~d~~i~v~d~~~~~~~~~~~------------~h---~~~v~~l~~sp~~-~~lasgs  289 (350)
                      .....|...|..+|+.+..+.            .+   ..-.+.+++.|.. ++++||-
T Consensus       192 W~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  192 WQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             TTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             CCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            778888889999988765431            01   2346899998765 4566764

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.25  E-value=0.17  Score=47.11  Aligned_cols=239  Identities=14%  Similarity=0.087  Sum_probs=116.8

Q ss_pred             eEEEEECCCCcEEE-EeeCC----CeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeC-----------CCeE
Q 018784           64 VWSCCLDANALFSA-SGSAD----FTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGF-----------EKIL  126 (350)
Q Consensus        64 V~~v~~~~~~~~l~-s~s~D----g~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~-----------d~~v  126 (350)
                      +....++|+++++| +-+..    ..+++.|+.+++.+... .... ...+.|.++++.|+-...           ...|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            34567899999776 33333    45999999998654432 2221 223899999877654432           2347


Q ss_pred             EEEECCCCCCCCee-e-cCCCCc-EEEEEEeCCCCcEEEEEeCC---CeEEEEECCCC-----ceeEeecCCCCeEEEEE
Q 018784          127 RIFDLNRPDAPPRE-V-GNSSGS-IRTVAWLHSDQTILSSCTDS---GGVRLWDARSG-----KIVQTLETKSPVTSAEV  195 (350)
Q Consensus       127 ~vwd~~~~~~~~~~-~-~~~~~~-v~~~~~~~~~~~~~~s~~~d---g~i~iwd~~~~-----~~~~~~~~~~~v~~~~~  195 (350)
                      ..|.+.++...-.. . ...... ...+..++++..+++.....   ..+.+.|+..+     ...........+....-
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~  284 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD  284 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence            78888755332111 1 222222 56677776666666544433   34888888764     22222222223332222


Q ss_pred             ecCCcEEEEEc----CCcEEEEECCCcce--eeeeecCCCC--ceeEecCCCCcEEEEecCCC--eEEEEEcccCeeEEe
Q 018784          196 SRDGRYITTAD----GSSVKFWDANHFGL--VKGYNMPCNT--ESASLEPKLGNIFIAGGEDM--WVHVFDFHTGEQIGC  265 (350)
Q Consensus       196 ~~~~~~l~~~~----~~~i~vwd~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~l~sg~~d~--~i~v~d~~~~~~~~~  265 (350)
                      ..++.+++.++    .+.|.-.++.....  -...-.+...  ....+....+.+++.--.++  .|+++++..+.....
T Consensus       285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~  364 (414)
T PF02897_consen  285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESRE  364 (414)
T ss_dssp             EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEE
T ss_pred             ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEee
Confidence            23444544433    24565566665542  1111111111  12222222345555555555  588889883333333


Q ss_pred             ec-CCCcCEEEEEEcCCCCE-EEE-ecC--CCcEEEecCCCCC
Q 018784          266 NK-GHHGPVHCVRFSPGGES-YAS-GSE--DGTIRIWQTNPPN  303 (350)
Q Consensus       266 ~~-~h~~~v~~l~~sp~~~~-las-gs~--Dg~v~vw~~~~~~  303 (350)
                      +. .-.+.|..+...++... +++ .|.  -.+++.||+...+
T Consensus       365 ~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  365 IPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             EESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred             ecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence            32 22334566655555443 222 332  3456666665443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.23  E-value=0.061  Score=49.86  Aligned_cols=31  Identities=23%  Similarity=0.456  Sum_probs=27.2

Q ss_pred             CcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          270 HGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       270 ~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      .+++..|+.||+++++|.-..+|.+.+...+
T Consensus       216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssD  246 (410)
T PF04841_consen  216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSD  246 (410)
T ss_pred             CCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence            3579999999999999999999999888754

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.18  E-value=0.00099  Score=54.60  Aligned_cols=139  Identities=12%  Similarity=0.094  Sum_probs=85.3

Q ss_pred             EeCCCeEEEEECCCCceeEee-cCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeee-eecCCCCceeE-ecCCCC
Q 018784          164 CTDSGGVRLWDARSGKIVQTL-ETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKG-YNMPCNTESAS-LEPKLG  240 (350)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~-~~~~~~~~~~~-~~~~~~  240 (350)
                      -+.|+.|+-++++..+.-..- .....- .....-+.++++.+.++.|.+|....+..... +........+. ..-..+
T Consensus        36 ~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~  114 (238)
T KOG2444|consen   36 TSADGLVRERKVRKHKESCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDS  114 (238)
T ss_pred             ccCCcccccchhhhhhhhhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccccccc
Confidence            355677777776643321110 011111 11122234566777889999888764322111 11111111122 222345


Q ss_pred             cEEEEecCCCeEEEEEcccCeeEEeecCCC-cCEEEEEEcCCCCEEEEe--cCCCcEEEecCCCCC
Q 018784          241 NIFIAGGEDMWVHVFDFHTGEQIGCNKGHH-GPVHCVRFSPGGESYASG--SEDGTIRIWQTNPPN  303 (350)
Q Consensus       241 ~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~-~~v~~l~~sp~~~~lasg--s~Dg~v~vw~~~~~~  303 (350)
                      .+..++++|+.||.|+....+.+.....|. .++..+..+..+.++++.  |.|..++.|++.+..
T Consensus       115 ~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~  180 (238)
T KOG2444|consen  115 SLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK  180 (238)
T ss_pred             ceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence            689999999999999999888887777787 677777777788889988  999999999986443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.13  E-value=0.068  Score=49.60  Aligned_cols=179  Identities=17%  Similarity=0.176  Sum_probs=100.6

Q ss_pred             ccEeEEEEcCCCCeEEEee---CC-CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe--EEEEECC
Q 018784          103 HIVRACAFSEDTHLLLTGG---FE-KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG--VRLWDAR  176 (350)
Q Consensus       103 ~~V~~~~~~~~~~~l~sg~---~d-~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~--i~iwd~~  176 (350)
                      ..+..-+|+|+++.++-..   .. ..+.++++..+....  .....+.-....|+|++.+++.+...|+.  |.+.|+.
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~--i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~  270 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV--ILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD  270 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce--eeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence            4466678899887765432   12 358888887654432  22344445566788888888888888876  5555776


Q ss_pred             CCceeEeecCCC-CeEEEEEecCCcEEEEEc--CC--cEEEEECCCcceeeeeecCCCCc-eeEecCCCCcEEEEec-CC
Q 018784          177 SGKIVQTLETKS-PVTSAEVSRDGRYITTAD--GS--SVKFWDANHFGLVKGYNMPCNTE-SASLEPKLGNIFIAGG-ED  249 (350)
Q Consensus       177 ~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~--~~--~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~sg~-~d  249 (350)
                      ++.. ..+.... .-..-.|+|||+.++-.+  +|  .|.+++...... ..++...... ...+++ ++++++..+ .+
T Consensus       271 ~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~Sp-dG~~i~~~~~~~  347 (425)
T COG0823         271 GKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSP-DGDKIVFESSSG  347 (425)
T ss_pred             CCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCC-CCCEEEEEeccC
Confidence            6653 3344322 223556899999876443  33  477777765543 2333322222 333344 465555444 34


Q ss_pred             Ce--EEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEE
Q 018784          250 MW--VHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYAS  287 (350)
Q Consensus       250 ~~--i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~las  287 (350)
                      +.  |.+.|+.++..+..+. +......-+|.|++..+..
T Consensus       348 g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~  386 (425)
T COG0823         348 GQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMF  386 (425)
T ss_pred             CceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEE
Confidence            44  6666766655332222 2222334456677666543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.12  E-value=0.016  Score=57.21  Aligned_cols=137  Identities=16%  Similarity=0.203  Sum_probs=87.8

Q ss_pred             EEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCC-------CCeEEEeeCCCeEEEEECCCCCCCCeeec----CC
Q 018784           76 SASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSED-------THLLLTGGFEKILRIFDLNRPDAPPREVG----NS  144 (350)
Q Consensus        76 l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~-------~~~l~sg~~d~~v~vwd~~~~~~~~~~~~----~~  144 (350)
                      |........|.--|+++|+.+..+.-...+.-..|.|+       ....+.|-.+..+..||++-.........    ..
T Consensus       497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~  576 (794)
T PF08553_consen  497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS  576 (794)
T ss_pred             eecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccccc
Confidence            33444567788889999998877753332223334443       23456677888899999874331111101    12


Q ss_pred             CCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCcee-EeecC-CCCeEEEEEecCCcEEEEEcCCcEEEEEC
Q 018784          145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV-QTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDA  215 (350)
Q Consensus       145 ~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~-~~~~~-~~~v~~~~~~~~~~~l~~~~~~~i~vwd~  215 (350)
                      .....+++-.  ..-.++.|+.+|.||+|| +.|+.. ..+.. ..||..+.++.||+++++.....+-+++.
T Consensus       577 ~~~Fs~~aTt--~~G~iavgs~~G~IRLyd-~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  577 KNNFSCFATT--EDGYIAVGSNKGDIRLYD-RLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             CCCceEEEec--CCceEEEEeCCCcEEeec-ccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence            3344555433  333566788999999999 444332 23333 57999999999999999988888888885

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.0033  Score=58.70  Aligned_cols=89  Identities=16%  Similarity=0.159  Sum_probs=69.4

Q ss_pred             eeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeE-EEEECCCCcEEEEeeCCCeEEEeeCCCCCeee
Q 018784           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVW-SCCLDANALFSASGSADFTAKLWDALTGDEKH   97 (350)
Q Consensus        19 v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~-~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~   97 (350)
                      +.-+.++|   .-.++|.+..+|.+-|.... .+.+.++.-|...++ +++|.|||+++|.|=.||+|++.|++++..+.
T Consensus        23 i~~~ewnP---~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   23 IKRIEWNP---KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             eEEEEEcC---ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            44455665   55699999999999988876 667778887777776 99999999999999999999999999887665


Q ss_pred             e--eeccccEeEEEEc
Q 018784           98 S--FEHKHIVRACAFS  111 (350)
Q Consensus        98 ~--~~h~~~V~~~~~~  111 (350)
                      .  +.....|.++-|.
T Consensus        99 ~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWD  114 (665)
T ss_pred             ccccccccchheeecc
Confidence            5  3333445555554

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.06  E-value=0.0034  Score=58.62  Aligned_cols=75  Identities=11%  Similarity=0.031  Sum_probs=61.4

Q ss_pred             CCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee-ccccEe-EEEEcCCCCeEEEeeCCCeEEEEECCCCCCC
Q 018784           62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVR-ACAFSEDTHLLLTGGFEKILRIFDLNRPDAP  137 (350)
Q Consensus        62 ~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-h~~~V~-~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~  137 (350)
                      -.|..+.|+|...++|.+-.+|.|-+..+. -+.+.++. +...|+ +++|.|||+.|+.|-.||+|++-|++++...
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            345677899999999999999988888776 45556665 555565 9999999999999999999999999876544

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.06  E-value=0.39  Score=47.85  Aligned_cols=275  Identities=13%  Similarity=0.161  Sum_probs=141.5

Q ss_pred             EEEecccCCCccEEEEEeCCCCeeEeeC--CCCceeeeccCc--cCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCee
Q 018784           21 DLFYSPITPDGFFLVSASKDSSPMLRNG--ETGDWIGTFEGH--KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK   96 (350)
Q Consensus        21 ~~~~~~~s~dg~~lasgs~d~~v~iw~~--~~~~~~~~l~gH--~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~   96 (350)
                      ++-+..+..|+.+|.++..||.+..+.+  .+|...-.-+-|  +.++.--.|+..+..-+=+..|+-..++-....-..
T Consensus       585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~  664 (1096)
T KOG1897|consen  585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVY  664 (1096)
T ss_pred             heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEE
Confidence            4444555557889999999999876554  344332111111  233332334433332222334444444432211111


Q ss_pred             eeeeccccEeEEEEcCC--CCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEE-------e--
Q 018784           97 HSFEHKHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC-------T--  165 (350)
Q Consensus        97 ~~~~h~~~V~~~~~~~~--~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~-------~--  165 (350)
                      ..++-+..-..+.|+.+  ...|+++. .+.+++..++.-+........-....+.+++-+....+.+.+       .  
T Consensus       665 spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~  743 (1096)
T KOG1897|consen  665 SPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYY  743 (1096)
T ss_pred             eccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhc
Confidence            11221211223344332  23444443 446677766543222222222333344444432111111111       1  


Q ss_pred             -CC---CeEEEEECCCCceeEeecCC--C---CeEEEEEecC-CcEEEEEc-----------CCcEEEEECCCc---cee
Q 018784          166 -DS---GGVRLWDARSGKIVQTLETK--S---PVTSAEVSRD-GRYITTAD-----------GSSVKFWDANHF---GLV  221 (350)
Q Consensus       166 -~d---g~i~iwd~~~~~~~~~~~~~--~---~v~~~~~~~~-~~~l~~~~-----------~~~i~vwd~~~~---~~~  221 (350)
                       ..   ..++++|-++.+.+...+..  .   .+.++.|..| +.+++.+.           .|.|.++.....   +.+
T Consensus       744 ~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v  823 (1096)
T KOG1897|consen  744 GEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELV  823 (1096)
T ss_pred             CCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeee
Confidence             11   24778888777766554432  2   3455557765 55655442           355666655442   222


Q ss_pred             eeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          222 KGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      .....  .....++...+++++|.  -...|++|++.+.+.++.-..|..++..+...-.+..++.|..=+.+.+-.++
T Consensus       824 ~e~~v--~Gav~aL~~fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~  898 (1096)
T KOG1897|consen  824 AETVV--KGAVYALVEFNGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYK  898 (1096)
T ss_pred             eeeee--ccceeehhhhCCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEe
Confidence            22222  22233333344666654  45789999999998888778899999999999999999999887777665544

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.87  E-value=0.33  Score=43.85  Aligned_cols=271  Identities=18%  Similarity=0.213  Sum_probs=121.2

Q ss_pred             cccCCCcc-EEEEEeCCCC--eeEeeCCCCceeeeccCcc-CCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee
Q 018784           25 SPITPDGF-FLVSASKDSS--PMLRNGETGDWIGTFEGHK-GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE  100 (350)
Q Consensus        25 ~~~s~dg~-~lasgs~d~~--v~iw~~~~~~~~~~l~gH~-~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~  100 (350)
                      +++++||+ +|..+..|+.  +.+.|+++++.. .|..+. .......++++...++=-.....|+--|+.+.+....+.
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~-QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~  119 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEIT-QLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE  119 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEE-E---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEE-ECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence            34667884 5555555666  455677888765 343332 222234566776665434455688888999988766655


Q ss_pred             cc-ccEeEEEE--cCCCCeEEEee---CC-------------------CeEEEEECCCCCCCCeeecCCCCcEEEEEEeC
Q 018784          101 HK-HIVRACAF--SEDTHLLLTGG---FE-------------------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLH  155 (350)
Q Consensus       101 h~-~~V~~~~~--~~~~~~l~sg~---~d-------------------~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  155 (350)
                      -+ ..+-...|  +.++..++-.-   .|                   ..|.-.|+.+++.  +.+......+.-+.|+|
T Consensus       120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~--~~v~~~~~wlgH~~fsP  197 (386)
T PF14583_consen  120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER--KVVFEDTDWLGHVQFSP  197 (386)
T ss_dssp             --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E--EEEEEESS-EEEEEEET
T ss_pred             CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce--eEEEecCccccCcccCC
Confidence            33 33333444  34555543221   11                   1122234443321  22222344566778888


Q ss_pred             CCCcEEEEEeC---CC-eEEEEECCC-CceeEeecCCC---CeEEEEEecCCcEEE--EE-cC---CcEEEEECCCccee
Q 018784          156 SDQTILSSCTD---SG-GVRLWDARS-GKIVQTLETKS---PVTSAEVSRDGRYIT--TA-DG---SSVKFWDANHFGLV  221 (350)
Q Consensus       156 ~~~~~~~s~~~---dg-~i~iwd~~~-~~~~~~~~~~~---~v~~~~~~~~~~~l~--~~-~~---~~i~vwd~~~~~~~  221 (350)
                      .+..+++=|-+   +. .-|||-+++ +.....+..+.   .+..=-|.|||..+.  .. .+   ..|.-+|+.+....
T Consensus       198 ~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~  277 (386)
T PF14583_consen  198 TDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR  277 (386)
T ss_dssp             TEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred             CCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence            88887776643   22 247776543 33334443322   234445789987553  21 22   24666778776554


Q ss_pred             eeeecCCCCceeEecCCCCcEEEEecCC----------------CeEEEEEcccCeeEE--e-------ecCCCc-CEEE
Q 018784          222 KGYNMPCNTESASLEPKLGNIFIAGGED----------------MWVHVFDFHTGEQIG--C-------NKGHHG-PVHC  275 (350)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~sg~~d----------------~~i~v~d~~~~~~~~--~-------~~~h~~-~v~~  275 (350)
                      ....++  ...-.....++.+++-=+.|                ..|+++++..++...  .       +.++.. .=-.
T Consensus       278 ~~~~~p--~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPh  355 (386)
T PF14583_consen  278 RLMEMP--WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPH  355 (386)
T ss_dssp             EEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT---
T ss_pred             EEEeCC--ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCC
Confidence            333332  11112223345665543332                267788887765431  1       111111 1145


Q ss_pred             EEEcCCCCEE-EEecCCCcEEEecCC
Q 018784          276 VRFSPGGESY-ASGSEDGTIRIWQTN  300 (350)
Q Consensus       276 l~~sp~~~~l-asgs~Dg~v~vw~~~  300 (350)
                      ..|+||++.+ .++...|...||-+.
T Consensus       356 p~FSPDgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  356 PSFSPDGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             -EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred             CccCCCCCEEEEECCCCCCccEEEEe
Confidence            7899999885 466678887777543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.80  E-value=0.37  Score=44.36  Aligned_cols=193  Identities=15%  Similarity=0.150  Sum_probs=101.6

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeee--ccC------ccCCeEEEEEC-----CCC---cEE
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT--FEG------HKGAVWSCCLD-----ANA---LFS   76 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~--l~g------H~~~V~~v~~~-----~~~---~~l   76 (350)
                      +-..++|++++.|    |-.++|.|..+|.+.|.|......+..  +..      ....|.++.|.     .|+   ..+
T Consensus        83 ~~~~g~vtal~~S----~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   83 DAKQGPVTALKNS----DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             ---S-SEEEEEE-----BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             eccCCcEeEEecC----CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence            4558899999887    566899999999999999855555432  222      22346677664     344   467


Q ss_pred             EEeeCCCeEEEeeCCC-CCeeee------e-eccccEeEEE-EcCC-C-------------------CeEEEeeCCCeEE
Q 018784           77 ASGSADFTAKLWDALT-GDEKHS------F-EHKHIVRACA-FSED-T-------------------HLLLTGGFEKILR  127 (350)
Q Consensus        77 ~s~s~Dg~v~vWd~~~-~~~~~~------~-~h~~~V~~~~-~~~~-~-------------------~~l~sg~~d~~v~  127 (350)
                      ..|-..|.+.+|.+.- ......      . .+.+.|..+. |+.+ |                   .-++....+..+|
T Consensus       159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir  238 (395)
T PF08596_consen  159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR  238 (395)
T ss_dssp             EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred             EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence            7788889999998641 111111      1 2445555443 3211 1                   2244445577899


Q ss_pred             EEECCCCCCCCeeecCCCCcEEEEEEe----CCCCcEEEEEeCCCeEEEEECCCCceeEeecCCC-----CeEEEEEecC
Q 018784          128 IFDLNRPDAPPREVGNSSGSIRTVAWL----HSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS-----PVTSAEVSRD  198 (350)
Q Consensus       128 vwd~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~v~~~~~~~~  198 (350)
                      ++.+.+.+...+.. ...-....+.+.    ......|+.-..+|.|+++.+..-+.+..++...     .+....++++
T Consensus       239 v~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~  317 (395)
T PF08596_consen  239 VFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRN  317 (395)
T ss_dssp             EE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TT
T ss_pred             EEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCC
Confidence            99887654433333 111122223332    2245567777789999999999888877766532     2344567888


Q ss_pred             CcEEEEEcCCcE
Q 018784          199 GRYITTADGSSV  210 (350)
Q Consensus       199 ~~~l~~~~~~~i  210 (350)
                      |.++.-.+...+
T Consensus       318 Gdi~~~~gpsE~  329 (395)
T PF08596_consen  318 GDIFYWTGPSEI  329 (395)
T ss_dssp             S-EEEE-SSSEE
T ss_pred             CCEEEEeCcccE
Confidence            887765544443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.73  E-value=0.38  Score=42.61  Aligned_cols=200  Identities=15%  Similarity=0.142  Sum_probs=110.7

Q ss_pred             EEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEE-EECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee------ccccE
Q 018784           33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSC-CLDANALFSASGSADFTAKLWDALTGDEKHSFE------HKHIV  105 (350)
Q Consensus        33 ~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v-~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~------h~~~V  105 (350)
                      ++.+--..+.+.-|+..+++.. .+.-. +.+.++ .+...+.++++   +..+.+++..++..+..+.      .....
T Consensus        39 L~w~DI~~~~i~r~~~~~g~~~-~~~~p-~~~~~~~~~d~~g~Lv~~---~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~  113 (307)
T COG3386          39 LLWVDILGGRIHRLDPETGKKR-VFPSP-GGFSSGALIDAGGRLIAC---EHGVRLLDPDTGGKITLLAEPEDGLPLNRP  113 (307)
T ss_pred             EEEEeCCCCeEEEecCCcCceE-EEECC-CCcccceeecCCCeEEEE---ccccEEEeccCCceeEEeccccCCCCcCCC
Confidence            5566666677788887766442 23222 222333 34444555443   5556667765554422221      12345


Q ss_pred             eEEEEcCCCCeEEEeeC------C---CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECC
Q 018784          106 RACAFSEDTHLLLTGGF------E---KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR  176 (350)
Q Consensus       106 ~~~~~~~~~~~l~sg~~------d---~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~  176 (350)
                      +.+...|+|.+-++...      .   ..=.+|-+.......+....+-.....++|++++..++++=+..+.|.-++..
T Consensus       114 ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         114 NDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             CceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence            67778888876665333      0   11134444321222223233333456789998877777776666778877764


Q ss_pred             C--C----ce-eEeec-CCCCeEEEEEecCCcEEEEEc-C-CcEEEEECCCcceeeeeecC-CCCceeEecCC
Q 018784          177 S--G----KI-VQTLE-TKSPVTSAEVSRDGRYITTAD-G-SSVKFWDANHFGLVKGYNMP-CNTESASLEPK  238 (350)
Q Consensus       177 ~--~----~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~-~-~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~  238 (350)
                      .  +    +. ..... .....-.+++..+|.+.+++. + +.|.+|+.. ++.+..+.+| ....++.|-..
T Consensus       194 ~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~  265 (307)
T COG3386         194 PATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGP  265 (307)
T ss_pred             cccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCC
Confidence            2  1    11 11111 234455677788888875443 3 389999988 8888888888 44445555443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.68  E-value=0.043  Score=50.66  Aligned_cols=141  Identities=15%  Similarity=0.176  Sum_probs=93.8

Q ss_pred             CcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCC-------eEEEeeCCCeEEEEECCCCCC-CCeeecCC
Q 018784           73 ALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTH-------LLLTGGFEKILRIFDLNRPDA-PPREVGNS  144 (350)
Q Consensus        73 ~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~-------~l~sg~~d~~v~vwd~~~~~~-~~~~~~~~  144 (350)
                      ..++.++..-..+.--|++.|+.+..+.....|.-+.+.|+.+       .-+.|-.|..|.-||++-... .......+
T Consensus       346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k  425 (644)
T KOG2395|consen  346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK  425 (644)
T ss_pred             ceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence            3456677777788888999999888876555578888888653       223466788889999863222 11111111


Q ss_pred             ----CCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEee-c-CCCCeEEEEEecCCcEEEEEcCCcEEEEECC
Q 018784          145 ----SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-E-TKSPVTSAEVSRDGRYITTADGSSVKFWDAN  216 (350)
Q Consensus       145 ----~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~  216 (350)
                          .....|.+-  ...-.++.|+.+|.||+||- .++...+. . ...+|..+..+.+|+++.+..+.++-+.|+.
T Consensus       426 qy~~k~nFsc~aT--T~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  426 QYSTKNNFSCFAT--TESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             ccccccccceeee--cCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence                122333332  23345677889999999995 55443333 2 2578999999999999999888888888753

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.52  E-value=0.7  Score=44.96  Aligned_cols=168  Identities=14%  Similarity=0.129  Sum_probs=89.8

Q ss_pred             CCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEee------CCCeEEEeeCCCCCeeeeeeccccEeEEEEcCC
Q 018784           40 DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS------ADFTAKLWDALTGDEKHSFEHKHIVRACAFSED  113 (350)
Q Consensus        40 d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s------~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~  113 (350)
                      ||.+.-.+...-.++.-.-+....+...++++++..+|-.-      .|..-.+|=...+.....+........-.|+|+
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspD  407 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLD  407 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCC
Confidence            56655443322223222223334567888999998766443      354444553222222122222223677789999


Q ss_pred             CCeEEEeeCC------------CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEE---EECCCC
Q 018784          114 THLLLTGGFE------------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL---WDARSG  178 (350)
Q Consensus       114 ~~~l~sg~~d------------~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i---wd~~~~  178 (350)
                      |..|++....            +.+.+.+++.+....    ...+.|..+.|++++.++++..  ++.|.+   -....|
T Consensus       408 G~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G  481 (591)
T PRK13616        408 ADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDG  481 (591)
T ss_pred             CCceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCC
Confidence            8877776432            222222343222111    3355799999998887777655  367777   343444


Q ss_pred             c-ee---EeecC--CCCeEEEEEecCCcEEEEEcCCcEEEE
Q 018784          179 K-IV---QTLET--KSPVTSAEVSRDGRYITTADGSSVKFW  213 (350)
Q Consensus       179 ~-~~---~~~~~--~~~v~~~~~~~~~~~l~~~~~~~i~vw  213 (350)
                      . .+   ..+..  ...+.++.|..++.+++...+....+|
T Consensus       482 ~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~  522 (591)
T PRK13616        482 QYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVW  522 (591)
T ss_pred             ceeecccEEeecccCCccccceEecCCEEEEEecCCCCceE
Confidence            3 11   11211  223578899999998766554433344

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.51  E-value=0.38  Score=46.72  Aligned_cols=148  Identities=13%  Similarity=0.081  Sum_probs=76.4

Q ss_pred             ceeEEEecccCCCccEEEEEe------CCCCeeEeeCC-CCceeeeccCccCCeEEEEECCCCcEEEEeeCC-CeEEEe-
Q 018784           18 PVVDLFYSPITPDGFFLVSAS------KDSSPMLRNGE-TGDWIGTFEGHKGAVWSCCLDANALFSASGSAD-FTAKLW-   88 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs------~d~~v~iw~~~-~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D-g~v~vW-   88 (350)
                      .+...+.+   |||..+|..-      .|..-.||-.. .+.....+.+.  ....-.|+++|..+++.+.. ..+++. 
T Consensus       351 ~vsspaiS---pdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        351 NITSAALS---RSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             CcccceEC---CCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence            45555555   4887766554      35444555432 22222223332  25667899998766665422 223333 


Q ss_pred             ----------eCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEE---ECCCCCCCC---eeecC-CCCcEEEE
Q 018784           89 ----------DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIF---DLNRPDAPP---REVGN-SSGSIRTV  151 (350)
Q Consensus        89 ----------d~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vw---d~~~~~~~~---~~~~~-~~~~v~~~  151 (350)
                                ++..+....  .....|..+.|+|||..++... ++.|.+=   ....+....   ..... ....+.++
T Consensus       426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l  502 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL  502 (591)
T ss_pred             cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence                      332222111  2355799999999999887655 4666663   322222111   11222 23345788


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEEC
Q 018784          152 AWLHSDQTILSSCTDSGGVRLWDA  175 (350)
Q Consensus       152 ~~~~~~~~~~~s~~~dg~i~iwd~  175 (350)
                      .|...+. +++ +..++.-.+|.+
T Consensus       503 ~W~~~~~-L~V-~~~~~~~~v~~v  524 (591)
T PRK13616        503 DWRTGDS-LVV-GRSDPEHPVWYV  524 (591)
T ss_pred             eEecCCE-EEE-EecCCCCceEEE
Confidence            8986655 333 333333444543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.51  E-value=0.0065  Score=49.95  Aligned_cols=130  Identities=15%  Similarity=0.150  Sum_probs=66.4

Q ss_pred             EeeCCCeEEEeeCCCCCeeeeeeccccEeEE-EEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCC
Q 018784           78 SGSADFTAKLWDALTGDEKHSFEHKHIVRAC-AFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS  156 (350)
Q Consensus        78 s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~-~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  156 (350)
                      ..|.||.|+=.++...+..  ......+.+. ..---+..+++|+.++.|.+|..................+.++--.-.
T Consensus        35 ~~sa~~~v~~~~~~k~k~s--~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~  112 (238)
T KOG2444|consen   35 ATSADGLVRERKVRKHKES--CRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGR  112 (238)
T ss_pred             cccCCcccccchhhhhhhh--hhhhhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccccc
Confidence            3477888877775432211  1100111111 001123568889999999999876322222221112222323221122


Q ss_pred             CCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEEC
Q 018784          157 DQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDA  215 (350)
Q Consensus       157 ~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~  215 (350)
                      +..+..++..|+.|+.|.+.-++.+....++.      +.|...+++.++++.|.+|++
T Consensus       113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~------~~~~e~~ivv~sd~~i~~a~~  165 (238)
T KOG2444|consen  113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN------FESGEELIVVGSDEFLKIADT  165 (238)
T ss_pred             ccceeEEeccCCceeeeccccCceeeeecccc------CCCcceeEEecCCceEEeecc
Confidence            34477888899999999998777655443332      122233344444555555543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.50  E-value=0.37  Score=42.44  Aligned_cols=150  Identities=12%  Similarity=0.141  Sum_probs=75.0

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC-CCC
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL-TGD   94 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~-~~~   94 (350)
                      .+.+..+..++   ||++||+++.-....-|+.-...+...-..-+..|.++.|.+++.+.+.+ ..|.|+.=+.. ..+
T Consensus       144 ~gs~~~~~r~~---dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~  219 (302)
T PF14870_consen  144 SGSINDITRSS---DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE  219 (302)
T ss_dssp             ---EEEEEE-T---TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred             cceeEeEEECC---CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence            34566666554   99999988765555667754333433333345789999999998876654 78888876621 111


Q ss_pred             eeee--ee---ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee--cCCCCcEEEEEEeCCCCcEEEEEeCC
Q 018784           95 EKHS--FE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV--GNSSGSIRTVAWLHSDQTILSSCTDS  167 (350)
Q Consensus        95 ~~~~--~~---h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~s~~~d  167 (350)
                      .-..  ..   ..-.+..++|.+++...++|+....++--|  .++.-.+..  .......+.+.|.+++.-+++  +.+
T Consensus       220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~D--gGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l--G~~  295 (302)
T PF14870_consen  220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTD--GGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL--GQD  295 (302)
T ss_dssp             EE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESS--TTSS-EE-GGGTTSSS---EEEEEETTEEEEE---ST
T ss_pred             ccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCC--CCccceECccccCCCCceEEEEEcCCCceEEE--CCC
Confidence            1110  11   122378999999988877776654433322  222211111  133456788888876554443  567


Q ss_pred             CeEEEE
Q 018784          168 GGVRLW  173 (350)
Q Consensus       168 g~i~iw  173 (350)
                      |.|.-|
T Consensus       296 G~ll~~  301 (302)
T PF14870_consen  296 GVLLRY  301 (302)
T ss_dssp             TEEEEE
T ss_pred             cEEEEe
Confidence            877654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.47  E-value=0.01  Score=36.24  Aligned_cols=30  Identities=27%  Similarity=0.585  Sum_probs=27.9

Q ss_pred             CcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          270 HGPVHCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       270 ~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                      ...|.+++|+|...++|.|..||.|.++++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl   40 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL   40 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence            456999999999999999999999999988

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.31  E-value=0.82  Score=43.27  Aligned_cols=174  Identities=17%  Similarity=0.235  Sum_probs=98.6

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCeeEeeCC----CCceeeeccCccCCeEEEEECCC----CcEEEEeeCCCeEEEee
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGE----TGDWIGTFEGHKGAVWSCCLDAN----ALFSASGSADFTAKLWD   89 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~----~~~~~~~l~gH~~~V~~v~~~~~----~~~l~s~s~Dg~v~vWd   89 (350)
                      ||..++|-    ||+.++-..    +.+-+.+    +...+    |.-..|..++|.|-    ...+...-....|-||.
T Consensus        21 PvhGlaWT----DGkqVvLT~----L~l~~gE~kfGds~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq   88 (671)
T PF15390_consen   21 PVHGLAWT----DGKQVVLTD----LQLHNGEPKFGDSKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ   88 (671)
T ss_pred             cccceEec----CCCEEEEEe----eeeeCCccccCCccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence            88899886    786554332    3333222    11223    33345888999764    32344456789999998


Q ss_pred             CCC-----CCeeee--eeccc----cEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCC
Q 018784           90 ALT-----GDEKHS--FEHKH----IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ  158 (350)
Q Consensus        90 ~~~-----~~~~~~--~~h~~----~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (350)
                      +.-     ++....  .+..+    -...|-|||....|+.=.....--++++.......+..-...+.|.+.+|..+++
T Consensus        89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~  168 (671)
T PF15390_consen   89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQ  168 (671)
T ss_pred             eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCC
Confidence            742     222211  11211    2357889999888766444433344555433333343345678899999999888


Q ss_pred             cEEEEEeCCCeEEEEECCCCce-----eEeecCCCCeEEEEEecCCcEEE
Q 018784          159 TILSSCTDSGGVRLWDARSGKI-----VQTLETKSPVTSAEVSRDGRYIT  203 (350)
Q Consensus       159 ~~~~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~  203 (350)
                      +++++-+..=.-++||-.....     -..+...+.|.++.-.-|.+..+
T Consensus       169 RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~dsqVAv  218 (671)
T PF15390_consen  169 RLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVDSQVAV  218 (671)
T ss_pred             EEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEeccceEEE
Confidence            8877766545578898543321     11223344555555444444433

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.29  E-value=1.1  Score=43.00  Aligned_cols=235  Identities=15%  Similarity=0.109  Sum_probs=125.8

Q ss_pred             EEEEEeCCCCeeEeeCCCCceeeecc--CccC--CeEEEEECCCCcEEEEee-----CCCeEEEeeCCCCCeeeeeec--
Q 018784           33 FLVSASKDSSPMLRNGETGDWIGTFE--GHKG--AVWSCCLDANALFSASGS-----ADFTAKLWDALTGDEKHSFEH--  101 (350)
Q Consensus        33 ~lasgs~d~~v~iw~~~~~~~~~~l~--gH~~--~V~~v~~~~~~~~l~s~s-----~Dg~v~vWd~~~~~~~~~~~h--  101 (350)
                      .+..++.|+.+.-.|.++|+.+....  .+..  .+.+.-.-.++.+++..+     .+|.|..+|..+++.+..+.-  
T Consensus       122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p  201 (527)
T TIGR03075       122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVP  201 (527)
T ss_pred             EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcC
Confidence            46667888999999999999886654  2221  111111111445544322     378999999999987765421  


Q ss_pred             -c-----------------------------ccEe-EEEEcCCCCeEEEeeCC-----C-----------eEEEEECCCC
Q 018784          102 -K-----------------------------HIVR-ACAFSEDTHLLLTGGFE-----K-----------ILRIFDLNRP  134 (350)
Q Consensus       102 -~-----------------------------~~V~-~~~~~~~~~~l~sg~~d-----~-----------~v~vwd~~~~  134 (350)
                       .                             ..+. ...+.|...+++.+..+     +           .|.--|++++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG  281 (527)
T TIGR03075       202 GDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTG  281 (527)
T ss_pred             CCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccC
Confidence             0                             0111 23455555555544322     2           3444455555


Q ss_pred             CCCCee-ecCCCCc-------EEEEEEeCCCC--cEEEEEeCCCeEEEEECCCCceeEeecC------------CC--Ce
Q 018784          135 DAPPRE-VGNSSGS-------IRTVAWLHSDQ--TILSSCTDSGGVRLWDARSGKIVQTLET------------KS--PV  190 (350)
Q Consensus       135 ~~~~~~-~~~~~~~-------v~~~~~~~~~~--~~~~s~~~dg~i~iwd~~~~~~~~~~~~------------~~--~v  190 (350)
                      +..... ..+|...       ..-+..-.+++  .+++.+..+|.+.+.|-++|+.+...+.            ..  ++
T Consensus       282 ~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~  361 (527)
T TIGR03075       282 KIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPI  361 (527)
T ss_pred             CEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCc
Confidence            443322 1222111       11111111222  4777889999999999999987522100            00  00


Q ss_pred             ----------------------------EEEEEecCCcEEEEE--c--------------------------------CC
Q 018784          191 ----------------------------TSAEVSRDGRYITTA--D--------------------------------GS  208 (350)
Q Consensus       191 ----------------------------~~~~~~~~~~~l~~~--~--------------------------------~~  208 (350)
                                                  ...+++|+..++...  +                                .+
T Consensus       362 ~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g  441 (527)
T TIGR03075       362 EVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMG  441 (527)
T ss_pred             cChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCce
Confidence                                        113444544333211  0                                13


Q ss_pred             cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecC
Q 018784          209 SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG  268 (350)
Q Consensus       209 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~  268 (350)
                      .+.-+|+.+++..-.+..........+. ..+.+++.++.++.++.+|.++|+.+-....
T Consensus       442 ~l~AiD~~tGk~~W~~~~~~p~~~~~l~-t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~  500 (527)
T TIGR03075       442 SLIAWDPITGKIVWEHKEDFPLWGGVLA-TAGDLVFYGTLEGYFKAFDAKTGEELWKFKT  500 (527)
T ss_pred             eEEEEeCCCCceeeEecCCCCCCCcceE-ECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence            4666777777666554433221111111 1356777788899999999999998866543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.28  E-value=0.74  Score=40.79  Aligned_cols=209  Identities=16%  Similarity=0.119  Sum_probs=105.3

Q ss_pred             EEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee----cCCCCcEEE
Q 018784           75 FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV----GNSSGSIRT  150 (350)
Q Consensus        75 ~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~----~~~~~~v~~  150 (350)
                      ++.+--..+.|.-|+..++.. ..+.++..+.++..-..+..|+++..  .+.+++++.........    .........
T Consensus        39 L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND  115 (307)
T COG3386          39 LLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPND  115 (307)
T ss_pred             EEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCc
Confidence            455555667778888765543 33444444555444333434444332  23445543222211110    111122223


Q ss_pred             EEEeCCCCcEEEEEeC-----------CCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEEcC--CcEEEEECC
Q 018784          151 VAWLHSDQTILSSCTD-----------SGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADG--SSVKFWDAN  216 (350)
Q Consensus       151 ~~~~~~~~~~~~s~~~-----------dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~--~~i~vwd~~  216 (350)
                      ....+ ++.+.++-..           -|.|+..|. .+..+..+.. -...+.++|+||++.|..++-  +.|.-|+..
T Consensus       116 ~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         116 GVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             eeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence            33332 3444433222           123444443 3444444433 344578999999987766543  566666554


Q ss_pred             C--cc---eeeeeec---CCCCceeEecCCCCcEEEEecCCC-eEEEEEcccCeeEEeecCCCcCEEEEEEc-CCCCE-E
Q 018784          217 H--FG---LVKGYNM---PCNTESASLEPKLGNIFIAGGEDM-WVHVFDFHTGEQIGCNKGHHGPVHCVRFS-PGGES-Y  285 (350)
Q Consensus       217 ~--~~---~~~~~~~---~~~~~~~~~~~~~~~~l~sg~~d~-~i~v~d~~~~~~~~~~~~h~~~v~~l~~s-p~~~~-l  285 (350)
                      .  ..   ....+..   +..+....... ++++.+++-.++ .|.+|+.. |+++.........+++++|- |+.+. +
T Consensus       194 ~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~  271 (307)
T COG3386         194 PATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLY  271 (307)
T ss_pred             cccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEE
Confidence            1  11   1001111   12233333333 467776555554 89999988 99888887776788899996 44443 4


Q ss_pred             EEecC
Q 018784          286 ASGSE  290 (350)
Q Consensus       286 asgs~  290 (350)
                      +++..
T Consensus       272 iTs~~  276 (307)
T COG3386         272 ITSAR  276 (307)
T ss_pred             EEecC
Confidence            44443

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.16  E-value=1.3  Score=42.54  Aligned_cols=186  Identities=15%  Similarity=0.120  Sum_probs=100.1

Q ss_pred             EEEEEeCCCCeeEeeCCCCceeeeccCcc-CCeE----------EEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeec
Q 018784           33 FLVSASKDSSPMLRNGETGDWIGTFEGHK-GAVW----------SCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH  101 (350)
Q Consensus        33 ~lasgs~d~~v~iw~~~~~~~~~~l~gH~-~~V~----------~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h  101 (350)
                      .|..++.++.|.-.|..+|+.+..+.--. ..+.          .+++.  +..++.++.|+.+.-.|..+++.+.....
T Consensus        71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~~~  148 (527)
T TIGR03075        71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSKKN  148 (527)
T ss_pred             EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence            55566778888889999998887654211 1111          11221  23445567899999999999998776532


Q ss_pred             ccc--EeEEEEcC---CCCeEEEee------CCCeEEEEECCCCCCCCeeec----------------------------
Q 018784          102 KHI--VRACAFSE---DTHLLLTGG------FEKILRIFDLNRPDAPPREVG----------------------------  142 (350)
Q Consensus       102 ~~~--V~~~~~~~---~~~~l~sg~------~d~~v~vwd~~~~~~~~~~~~----------------------------  142 (350)
                      ...  -..+.-+|   ++ .++.+.      .++.|..+|+++++.......                            
T Consensus       149 ~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~  227 (527)
T TIGR03075       149 GDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDA  227 (527)
T ss_pred             ccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCc
Confidence            110  00111112   33 344443      267888888776543321100                            


Q ss_pred             --CCCCcEE-EEEEeCCCCcEEEEEeC----CC-----------eEEEEECCCCceeEeecCC----------CCeEEEE
Q 018784          143 --NSSGSIR-TVAWLHSDQTILSSCTD----SG-----------GVRLWDARSGKIVQTLETK----------SPVTSAE  194 (350)
Q Consensus       143 --~~~~~v~-~~~~~~~~~~~~~s~~~----dg-----------~i~iwd~~~~~~~~~~~~~----------~~v~~~~  194 (350)
                        ...+.++ .+++-+..+.+++.-+.    ++           .|.--|+++|+....++..          .+..-+.
T Consensus       228 ~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d  307 (527)
T TIGR03075       228 WKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFD  307 (527)
T ss_pred             cccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEE
Confidence              0111222 12333333333332221    11           6777899999988777641          1122222


Q ss_pred             EecCCc---EEE-EEcCCcEEEEECCCccee
Q 018784          195 VSRDGR---YIT-TADGSSVKFWDANHFGLV  221 (350)
Q Consensus       195 ~~~~~~---~l~-~~~~~~i~vwd~~~~~~~  221 (350)
                      +..+|+   .++ ...+|.+.+.|-++++.+
T Consensus       308 ~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       308 LKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             eccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            334665   443 345788899998887765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.06  E-value=0.83  Score=39.28  Aligned_cols=265  Identities=15%  Similarity=0.169  Sum_probs=129.3

Q ss_pred             CceeEEEecccCCCc-cEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCC-CcEEEEeeCCCe-EEEeeCCCC
Q 018784           17 RPVVDLFYSPITPDG-FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFT-AKLWDALTG   93 (350)
Q Consensus        17 ~~v~~~~~~~~s~dg-~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~-v~vWd~~~~   93 (350)
                      .++..-+|..  .|| ..+++.+.+|++.---      ..--.+|     .++++|. ...++-+-.-|+ ..++|....
T Consensus        35 qavfasaf~~--~dgs~g~a~~~eaGk~v~~~------~lpaR~H-----gi~~~p~~~ravafARrPGtf~~vfD~~~~  101 (366)
T COG3490          35 QAVFASAFDA--RDGSFGAATLSEAGKIVFAT------ALPARGH-----GIAFHPALPRAVAFARRPGTFAMVFDPNGA  101 (366)
T ss_pred             cchheeeeec--cCCceeEEEEccCCceeeee------ecccccC-----CeecCCCCcceEEEEecCCceEEEECCCCC
Confidence            3454445543  455 3556666666643210      0011233     2344443 223333334444 245777666


Q ss_pred             Ceeeeee---ccccEeEEEEcCCCCeEEEeeCC-----CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe
Q 018784           94 DEKHSFE---HKHIVRACAFSEDTHLLLTGGFE-----KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (350)
Q Consensus        94 ~~~~~~~---h~~~V~~~~~~~~~~~l~sg~~d-----~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~  165 (350)
                      +...++.   .....-.=.|||+|.+|+..-.|     |.|-|||.........+...+.-....+.+.+++..+++..+
T Consensus       102 ~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG  181 (366)
T COG3490         102 QEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG  181 (366)
T ss_pred             cCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence            5444332   11111122589999999876443     779999987554444444444444556777766555555433


Q ss_pred             C-----------------CCeEEEEECCCCceeEeec-----CCCCeEEEEEecCCcEEEEEc------CCcEEEEECCC
Q 018784          166 D-----------------SGGVRLWDARSGKIVQTLE-----TKSPVTSAEVSRDGRYITTAD------GSSVKFWDANH  217 (350)
Q Consensus       166 ~-----------------dg~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~------~~~i~vwd~~~  217 (350)
                      .                 .-.+.+.|..+|..+....     .+..+..++..+||..+....      |----+=-.+.
T Consensus       182 GIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~  261 (366)
T COG3490         182 GIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRK  261 (366)
T ss_pred             ceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccC
Confidence            0                 1123333434444332221     123567777777777665431      10000000111


Q ss_pred             cceeeeeecCC--------CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEec
Q 018784          218 FGLVKGYNMPC--------NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS  289 (350)
Q Consensus       218 ~~~~~~~~~~~--------~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs  289 (350)
                      ++.++-+.++.        ...++..+..++-+.++.-..+...+||..+|..+....-    .-+.-.-+...-++..|
T Consensus       262 g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l----~daaGva~~~~gf~vss  337 (366)
T COG3490         262 GEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL----PDAAGVAAAKGGFAVSS  337 (366)
T ss_pred             CCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc----cccccceeccCceEEec
Confidence            22222222221        1223444444556666766777888999999987643211    11111223334456667


Q ss_pred             CCCcEEEec
Q 018784          290 EDGTIRIWQ  298 (350)
Q Consensus       290 ~Dg~v~vw~  298 (350)
                      .+|.+.++.
T Consensus       338 g~G~~~~~s  346 (366)
T COG3490         338 GQGRIIFYS  346 (366)
T ss_pred             CCceEEecc
Confidence            778888773

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.03  E-value=1.9  Score=43.25  Aligned_cols=115  Identities=17%  Similarity=0.096  Sum_probs=70.3

Q ss_pred             cccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCC--------eEEEEEC----------------CCCcEEEEee
Q 018784           25 SPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGA--------VWSCCLD----------------ANALFSASGS   80 (350)
Q Consensus        25 ~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~--------V~~v~~~----------------~~~~~l~s~s   80 (350)
                      .|+--++ .|..++.++.+.-.|..+|+.+..++-....        .+.+++-                ..+..++.++
T Consensus       189 TPlvvgg-~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T  267 (764)
T TIGR03074       189 TPLKVGD-TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPT  267 (764)
T ss_pred             CCEEECC-EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEec
Confidence            3433334 5566677888888899999887766432211        1222221                1234666778


Q ss_pred             CCCeEEEeeCCCCCeeeeeeccccEe-------------EEEEcC--CCCeEEEeeC----------CCeEEEEECCCCC
Q 018784           81 ADFTAKLWDALTGDEKHSFEHKHIVR-------------ACAFSE--DTHLLLTGGF----------EKILRIFDLNRPD  135 (350)
Q Consensus        81 ~Dg~v~vWd~~~~~~~~~~~h~~~V~-------------~~~~~~--~~~~l~sg~~----------d~~v~vwd~~~~~  135 (350)
                      .|+.+.-.|..+++....+..++.|.             ...-.|  .+..++.|+.          +|.|+-+|+.+++
T Consensus       268 ~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk  347 (764)
T TIGR03074       268 SDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA  347 (764)
T ss_pred             CCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence            89999999999999887765433321             111122  2345666643          6889999998877


Q ss_pred             CCCee
Q 018784          136 APPRE  140 (350)
Q Consensus       136 ~~~~~  140 (350)
                      .....
T Consensus       348 l~W~~  352 (764)
T TIGR03074       348 LVWAW  352 (764)
T ss_pred             EeeEE
Confidence            65443

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PHA02790 Kelch-like protein; Provisional

Probab=95.99  E-value=0.75  Score=43.74  Aligned_cols=183  Identities=10%  Similarity=0.009  Sum_probs=83.0

Q ss_pred             CCcEEEEeeCCC-----eEEEeeCCCCCeee--eeeccccEeEEEEcCCCCeEEEeeCC--CeEEEEECCCCCCCCeeec
Q 018784           72 NALFSASGSADF-----TAKLWDALTGDEKH--SFEHKHIVRACAFSEDTHLLLTGGFE--KILRIFDLNRPDAPPREVG  142 (350)
Q Consensus        72 ~~~~l~s~s~Dg-----~v~vWd~~~~~~~~--~~~h~~~V~~~~~~~~~~~l~sg~~d--~~v~vwd~~~~~~~~~~~~  142 (350)
                      ++.+++.||.++     ++..||..++.-..  .+..+..-.+++ .-++.+.+.||.+  ..+..||..+.........
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            456667777653     46667776543211  111111111121 2356667777754  3577788653321110000


Q ss_pred             CCCCcEEEEEEeCCCCcEEEEEeCC---CeEEEEECCCCceeEeecCCCCe-EEEEEecCCcEEEEEcCCcEEEEECCCc
Q 018784          143 NSSGSIRTVAWLHSDQTILSSCTDS---GGVRLWDARSGKIVQTLETKSPV-TSAEVSRDGRYITTADGSSVKFWDANHF  218 (350)
Q Consensus       143 ~~~~~v~~~~~~~~~~~~~~s~~~d---g~i~iwd~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~~~i~vwd~~~~  218 (350)
                      ...-.-.+++.  -++.+.+.||.+   .++..||+++.+=...-....+. ......-++++.+.+  |.+.+||..+.
T Consensus       350 ~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp~~~  425 (480)
T PHA02790        350 LKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCESSN  425 (480)
T ss_pred             CCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecCCCC
Confidence            10000111221  256666666654   34778888765311111111111 112223456655554  45678888765


Q ss_pred             ceeeeeecCCCCceeEecCCCCcEEEEecCC-----CeEEEEEccc
Q 018784          219 GLVKGYNMPCNTESASLEPKLGNIFIAGGED-----MWVHVFDFHT  259 (350)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-----~~i~v~d~~~  259 (350)
                      .-...-.++..........-++++++.|+.+     ..+..||..+
T Consensus       426 ~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        426 TWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             cEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCC
Confidence            4332222222222222222346888888864     2355555543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.93  E-value=2.2  Score=42.95  Aligned_cols=281  Identities=12%  Similarity=0.099  Sum_probs=147.0

Q ss_pred             CCceeEEEecccC--CC-ccEEEEEeCCCCeeEee-CCCCceee--eccCc--cCCeEEEEECCCCcEEEEeeCCCeEEE
Q 018784           16 SRPVVDLFYSPIT--PD-GFFLVSASKDSSPMLRN-GETGDWIG--TFEGH--KGAVWSCCLDANALFSASGSADFTAKL   87 (350)
Q Consensus        16 ~~~v~~~~~~~~s--~d-g~~lasgs~d~~v~iw~-~~~~~~~~--~l~gH--~~~V~~v~~~~~~~~l~s~s~Dg~v~v   87 (350)
                      +..|.|+.++|.-  +. ++++|.|.++..+.+-- ..+...+.  .+.+-  ..+|....+-.|..+|..+..||.+..
T Consensus       530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~  609 (1096)
T KOG1897|consen  530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY  609 (1096)
T ss_pred             cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence            3467788888752  21 35899999988866532 23333222  12222  134555667777889999999999998


Q ss_pred             eeCCCCCeeee-----eeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEE-EEEeCC-CCcE
Q 018784           88 WDALTGDEKHS-----FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRT-VAWLHS-DQTI  160 (350)
Q Consensus        88 Wd~~~~~~~~~-----~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~-~~~~~~-~~~~  160 (350)
                      +.+.....+..     .-...++.--.|+..++.-+-+..|+-..+|--.. ..  ....-.-..+.. +.|..+ ..-.
T Consensus       610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kL--v~spls~kev~~~c~f~s~a~~d~  686 (1096)
T KOG1897|consen  610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KL--VYSPLSLKEVNHMCPFNSDAYPDS  686 (1096)
T ss_pred             EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cE--EEeccchHHhhhhcccccccCCce
Confidence            86543322111     11223333334544333333344455555554321 10  000000001111 112221 2223


Q ss_pred             EEEEeCCCeEEEEECCCC--ceeEeecCCCCeEEEEEecCCcEEEEE--------c----C---CcEEEEECCCcceeee
Q 018784          161 LSSCTDSGGVRLWDARSG--KIVQTLETKSPVTSAEVSRDGRYITTA--------D----G---SSVKFWDANHFGLVKG  223 (350)
Q Consensus       161 ~~s~~~dg~i~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~--------~----~---~~i~vwd~~~~~~~~~  223 (350)
                      ++++.. +.+++--+..=  -.++++..+.....+++.+...++...        .    .   ..++++|.+++.....
T Consensus       687 l~~~~~-~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~  765 (1096)
T KOG1897|consen  687 LASANG-GALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSS  765 (1096)
T ss_pred             EEEecC-CceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEee
Confidence            455444 46777655431  223445555556666666643333221        1    1   1378899888877766


Q ss_pred             eecCCCC-----ceeEecCCCCcEEEEecC----------CCeEEEEEcccCeeEEeecC--CCcCEEEEEEcCCCCEEE
Q 018784          224 YNMPCNT-----ESASLEPKLGNIFIAGGE----------DMWVHVFDFHTGEQIGCNKG--HHGPVHCVRFSPGGESYA  286 (350)
Q Consensus       224 ~~~~~~~-----~~~~~~~~~~~~l~sg~~----------d~~i~v~d~~~~~~~~~~~~--h~~~v~~l~~sp~~~~la  286 (350)
                      +.+....     .++.+..+.+.++++|..          .|+|.+|....+..+.....  -.+.+.++.-- +|+++|
T Consensus       766 hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA  844 (1096)
T KOG1897|consen  766 HEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLA  844 (1096)
T ss_pred             ccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEE
Confidence            5554332     223344444678888873          57888888877444433322  24566666543 677776


Q ss_pred             EecCCCcEEEecCCCCC
Q 018784          287 SGSEDGTIRIWQTNPPN  303 (350)
Q Consensus       287 sgs~Dg~v~vw~~~~~~  303 (350)
                      .  -...|+++++...+
T Consensus       845 ~--In~~vrLye~t~~~  859 (1096)
T KOG1897|consen  845 G--INQSVRLYEWTTER  859 (1096)
T ss_pred             e--cCcEEEEEEccccc
Confidence            4  44578888876553

>PHA03098 kelch-like protein; Provisional

Probab=95.80  E-value=0.71  Score=44.53  Aligned_cols=185  Identities=13%  Similarity=0.065  Sum_probs=80.2

Q ss_pred             CCCcEEEEeeCCC------eEEEeeCCCCCeeee--eeccccEeEEEEcCCCCeEEEeeCC-----CeEEEEECCCCCCC
Q 018784           71 ANALFSASGSADF------TAKLWDALTGDEKHS--FEHKHIVRACAFSEDTHLLLTGGFE-----KILRIFDLNRPDAP  137 (350)
Q Consensus        71 ~~~~~l~s~s~Dg------~v~vWd~~~~~~~~~--~~h~~~V~~~~~~~~~~~l~sg~~d-----~~v~vwd~~~~~~~  137 (350)
                      .++.+++.||.++      .+..+|..+.+-...  +..+..-.+++ .-++.+.+.||.+     ..+..||..+....
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE-EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            3455666666543      466777765542211  11111111111 2356677777765     34667877643321


Q ss_pred             CeeecCCCCcEEEEEEeCCCCcEEEEEeCC------CeEEEEECCCCceeE--eecCCCCeEEEEEecCCcEEEEE-cC-
Q 018784          138 PREVGNSSGSIRTVAWLHSDQTILSSCTDS------GGVRLWDARSGKIVQ--TLETKSPVTSAEVSRDGRYITTA-DG-  207 (350)
Q Consensus       138 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d------g~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~-~~-  207 (350)
                      ..........-.+++.  -++.+++.||.+      +.+..||+.+.+=..  .+.......+ +...++++++.+ .. 
T Consensus       372 ~~~~lp~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~  448 (534)
T PHA03098        372 EEPPLIFPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGC-AIYHDGKIYVIGGISY  448 (534)
T ss_pred             eCCCcCcCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCce-EEEECCEEEEECCccC
Confidence            1100011111111221  245566666522      358889987653211  1111111111 223345554433 21 


Q ss_pred             -------CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCC-----CeEEEEEccc
Q 018784          208 -------SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED-----MWVHVFDFHT  259 (350)
Q Consensus       208 -------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-----~~i~v~d~~~  259 (350)
                             ..+.+||..+.+....-.++...........++.+++.|+.+     +.+.+||..+
T Consensus       449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~  512 (534)
T PHA03098        449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKT  512 (534)
T ss_pred             CCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCC
Confidence                   137888887654332211111111111111246777777754     3566666543

>PHA03098 kelch-like protein; Provisional

Probab=95.69  E-value=0.87  Score=43.93  Aligned_cols=141  Identities=14%  Similarity=0.168  Sum_probs=66.1

Q ss_pred             CCcEEEEEeCC-----CeEEEEECCCCceeE--eecCCCCeEEEEEecCCcEEEE-Ec--C----CcEEEEECCCcceee
Q 018784          157 DQTILSSCTDS-----GGVRLWDARSGKIVQ--TLETKSPVTSAEVSRDGRYITT-AD--G----SSVKFWDANHFGLVK  222 (350)
Q Consensus       157 ~~~~~~s~~~d-----g~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~-~~--~----~~i~vwd~~~~~~~~  222 (350)
                      ++.+++.||.+     ..+..||+.+.+=..  .+.....-.+++ .-++++.+. +.  +    ..+..||+.+..-..
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~  420 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK  420 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence            45566666654     357788887654211  111111111222 234555443 31  1    357888987654332


Q ss_pred             eeecCCCCceeEecCCCCcEEEEecCCC--------eEEEEEcccCe--eEEeecCCCcCEEEEEEcCCCCEEEEecCC-
Q 018784          223 GYNMPCNTESASLEPKLGNIFIAGGEDM--------WVHVFDFHTGE--QIGCNKGHHGPVHCVRFSPGGESYASGSED-  291 (350)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~sg~~d~--------~i~v~d~~~~~--~~~~~~~h~~~v~~l~~sp~~~~lasgs~D-  291 (350)
                      .-.++............+.+++.|+.+.        .+.+||..+.+  .+..+.........+.+  ++.+++.|+.+ 
T Consensus       421 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~  498 (534)
T PHA03098        421 GSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKY  498 (534)
T ss_pred             cCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcC
Confidence            2222222111111222467888887532        37888876543  22222111111112222  66777778765 


Q ss_pred             ----CcEEEecCC
Q 018784          292 ----GTIRIWQTN  300 (350)
Q Consensus       292 ----g~v~vw~~~  300 (350)
                          ..|.++|..
T Consensus       499 ~~~~~~v~~yd~~  511 (534)
T PHA03098        499 EYYINEIEVYDDK  511 (534)
T ss_pred             CcccceeEEEeCC
Confidence                356666543

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.63  E-value=1.7  Score=39.51  Aligned_cols=217  Identities=13%  Similarity=0.102  Sum_probs=108.8

Q ss_pred             CCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCC----------------
Q 018784           81 ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS----------------  144 (350)
Q Consensus        81 ~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~----------------  144 (350)
                      ..+.+.|+|+.+++..........+....|+|+|+.++-.. ++.|.++++...........+.                
T Consensus        21 ~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv   99 (353)
T PF00930_consen   21 FKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV   99 (353)
T ss_dssp             EEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred             cceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence            34678889998875544433356788999999999887665 5678888765432110000000                


Q ss_pred             CCcEEEEEEeCCCCcEEEEEeCCCe-----------------------------------EEEEECCCCceeE-ee----
Q 018784          145 SGSIRTVAWLHSDQTILSSCTDSGG-----------------------------------VRLWDARSGKIVQ-TL----  184 (350)
Q Consensus       145 ~~~v~~~~~~~~~~~~~~s~~~dg~-----------------------------------i~iwd~~~~~~~~-~~----  184 (350)
                      -+.-..+-|+|++..++..--++..                                   +.++|+.+++... ..    
T Consensus       100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~  179 (353)
T PF00930_consen  100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSL  179 (353)
T ss_dssp             SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHH
T ss_pred             cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecccc
Confidence            1122345666665555544333332                                   3334554443311 10    


Q ss_pred             -cCCCCeEEEEEecCCc-EEEEE--cCC---cEEEEECCCccee--eeeecCCC---CceeEec-CCCCcEEEEecCCCe
Q 018784          185 -ETKSPVTSAEVSRDGR-YITTA--DGS---SVKFWDANHFGLV--KGYNMPCN---TESASLE-PKLGNIFIAGGEDMW  251 (350)
Q Consensus       185 -~~~~~v~~~~~~~~~~-~l~~~--~~~---~i~vwd~~~~~~~--~~~~~~~~---~~~~~~~-~~~~~~l~sg~~d~~  251 (350)
                       .....+..+.|.++++ +++.-  .+.   .+.+.|..+....  .....+.-   .....+. +....++.....||.
T Consensus       180 ~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~  259 (353)
T PF00930_consen  180 NPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGY  259 (353)
T ss_dssp             HTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred             CCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCC
Confidence             1123467788888888 44332  222   3566677654332  11111111   1122222 445566666668886


Q ss_pred             EEEE--EcccCeeEEeecCCCcCEEE-EEEcCCCCEE-EEecCC--CcEEEecC
Q 018784          252 VHVF--DFHTGEQIGCNKGHHGPVHC-VRFSPGGESY-ASGSED--GTIRIWQT  299 (350)
Q Consensus       252 i~v~--d~~~~~~~~~~~~h~~~v~~-l~~sp~~~~l-asgs~D--g~v~vw~~  299 (350)
                      -+||  +...+. ...+....-.|.. +.+.+++..+ .++..+  ..-.||.+
T Consensus       260 ~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v  312 (353)
T PF00930_consen  260 RHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV  312 (353)
T ss_dssp             EEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred             cEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence            5555  544444 3345444455644 6777776654 455553  24444443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.50  E-value=1.3  Score=38.12  Aligned_cols=184  Identities=16%  Similarity=0.234  Sum_probs=99.7

Q ss_pred             cCCCccEEEEEeC-----CCCeeEeeCCC-CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEe------------
Q 018784           27 ITPDGFFLVSASK-----DSSPMLRNGET-GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW------------   88 (350)
Q Consensus        27 ~s~dg~~lasgs~-----d~~v~iw~~~~-~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vW------------   88 (350)
                      ++|||.+|...=+     -|.|-|||... .+.+.++.+|--.=.-+.+.+||++++.+  .|-|+.-            
T Consensus       121 fs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva--nGGIethpdfgR~~lNlds  198 (366)
T COG3490         121 FSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVA--NGGIETHPDFGRTELNLDS  198 (366)
T ss_pred             cCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEe--CCceecccccCccccchhh
Confidence            4458988764433     34577899753 34566777776555667888999998865  4555544            


Q ss_pred             --------eCCCCCe--eeeee---ccccEeEEEEcCCCCeEEEeeCCCeEE----EEECCCCCCCCee-------ecCC
Q 018784           89 --------DALTGDE--KHSFE---HKHIVRACAFSEDTHLLLTGGFEKILR----IFDLNRPDAPPRE-------VGNS  144 (350)
Q Consensus        89 --------d~~~~~~--~~~~~---h~~~V~~~~~~~~~~~l~sg~~d~~v~----vwd~~~~~~~~~~-------~~~~  144 (350)
                              |..+++.  ++++.   +...++.++.-++|+..+.+-..|.-.    +--...+..+.+.       ....
T Consensus       199 MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~  278 (366)
T COG3490         199 MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAF  278 (366)
T ss_pred             cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHH
Confidence                    2222221  11221   334577788778877655443222100    0000001111111       1112


Q ss_pred             CCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEE
Q 018784          145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWD  214 (350)
Q Consensus       145 ~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd  214 (350)
                      ...+-+++....++.+.++.-.-+...+||..+|..+....... +..+.... +-+.+++.+|.|.++.
T Consensus       279 anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d-aaGva~~~-~gf~vssg~G~~~~~s  346 (366)
T COG3490         279 ANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD-AAGVAAAK-GGFAVSSGQGRIIFYS  346 (366)
T ss_pred             HhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc-cccceecc-CceEEecCCceEEecc
Confidence            23466677666677777877776778899999998765443221 11122222 3355555666776663

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.46  E-value=1.7  Score=38.39  Aligned_cols=157  Identities=14%  Similarity=0.168  Sum_probs=80.8

Q ss_pred             ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC-eeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEE
Q 018784           52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFD  130 (350)
Q Consensus        52 ~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd  130 (350)
                      .+.....+-.+.+..+..++++.+++.++.-...+-||..... ..+...-...|.++.|.|++.+.+. ...+.|+.=+
T Consensus       135 tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~  213 (302)
T PF14870_consen  135 TWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSD  213 (302)
T ss_dssp             SEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE
T ss_pred             CeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEcc
Confidence            3444445555778888889999998887776777789864322 3333345678999999999876554 4788888776


Q ss_pred             C-CCCCC---CCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC----CCCeEEEEEecCCcEE
Q 018784          131 L-NRPDA---PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET----KSPVTSAEVSRDGRYI  202 (350)
Q Consensus       131 ~-~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~----~~~v~~~~~~~~~~~l  202 (350)
                      . ...+.   +........-.+..++|.++. .+.++|+. |++ +.....|+.-.....    ...+..+.|.++.+-+
T Consensus       214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf  290 (302)
T PF14870_consen  214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPN-EIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF  290 (302)
T ss_dssp             -TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE
T ss_pred             CCCCccccccccCCcccCceeeEEEEecCCC-CEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceE
Confidence            2 11110   000011112237888987654 45555544 444 334455655444432    4457888888878888


Q ss_pred             EEEcCCcEEE
Q 018784          203 TTADGSSVKF  212 (350)
Q Consensus       203 ~~~~~~~i~v  212 (350)
                      +.+.+|.+--
T Consensus       291 ~lG~~G~ll~  300 (302)
T PF14870_consen  291 VLGQDGVLLR  300 (302)
T ss_dssp             EE-STTEEEE
T ss_pred             EECCCcEEEE
Confidence            8888876543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.43  E-value=1.6  Score=37.84  Aligned_cols=160  Identities=15%  Similarity=0.172  Sum_probs=100.9

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeec--cCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF--EGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l--~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~   90 (350)
                      .|-+..|+++.|+|   +.+.|.+-.+...-.+|=...|+.++++  .+-.++ -++.+-..+++.++-=.++.+.+..+
T Consensus        82 ~g~~~nvS~LTynp---~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~Dp-E~Ieyig~n~fvi~dER~~~l~~~~v  157 (316)
T COG3204          82 LGETANVSSLTYNP---DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDP-ETIEYIGGNQFVIVDERDRALYLFTV  157 (316)
T ss_pred             ccccccccceeeCC---CcceEEEecCCCceEEEEecCCceEEEecccccCCh-hHeEEecCCEEEEEehhcceEEEEEE
Confidence            46566699999997   7778888777777777766788888765  342222 34566677888887777788877765


Q ss_pred             CCCCe-------eeee---ec-cccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCe--eecCC-------CCcEEE
Q 018784           91 LTGDE-------KHSF---EH-KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR--EVGNS-------SGSIRT  150 (350)
Q Consensus        91 ~~~~~-------~~~~---~h-~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~--~~~~~-------~~~v~~  150 (350)
                      .....       ...+   .+ +.....++|.|..+.|..+-.-.-++||.+........  ....+       -..+..
T Consensus       158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg  237 (316)
T COG3204         158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG  237 (316)
T ss_pred             cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence            43321       1122   23 45678999999999898888888888887653221111  00111       112444


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEECC
Q 018784          151 VAWLHSDQTILSSCTDSGGVRLWDAR  176 (350)
Q Consensus       151 ~~~~~~~~~~~~s~~~dg~i~iwd~~  176 (350)
                      +.|.+..+.+++-+.+++.+.-.|..
T Consensus       238 l~~~~~~~~LLVLS~ESr~l~Evd~~  263 (316)
T COG3204         238 LEFNAITNSLLVLSDESRRLLEVDLS  263 (316)
T ss_pred             ceecCCCCcEEEEecCCceEEEEecC
Confidence            55555556666665666666666643

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.34  E-value=1.4  Score=36.80  Aligned_cols=53  Identities=19%  Similarity=0.130  Sum_probs=42.5

Q ss_pred             CCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCC-CC-EEEEecCC
Q 018784          239 LGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPG-GE-SYASGSED  291 (350)
Q Consensus       239 ~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~-~~-~lasgs~D  291 (350)
                      .|+++++.-..++|...|..+|+.+..+.-....|++++|--. -. +++|+..+
T Consensus       222 eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa~  276 (310)
T KOG4499|consen  222 EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAAK  276 (310)
T ss_pred             CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehhc
Confidence            5889999999999999999999999988888889999999732 22 34555543

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.32  E-value=0.36  Score=44.72  Aligned_cols=143  Identities=12%  Similarity=0.083  Sum_probs=91.0

Q ss_pred             CCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCC--------cEEEEEcCCcEEEEECCCcce-ee---e
Q 018784          156 SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDG--------RYITTADGSSVKFWDANHFGL-VK---G  223 (350)
Q Consensus       156 ~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~--------~~l~~~~~~~i~vwd~~~~~~-~~---~  223 (350)
                      +...++..++....+.--|++.|+.+-.+..+..+ -+.+.|..        ..|++-++..|.-.|.|-... +.   .
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es  556 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES  556 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence            33445666777778888899999999988887766 56677654        335555666666667664331 11   1


Q ss_pred             eecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          224 YNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      ..........+.......++++++..|.|++||--.-+.-..+.+....|..+..+.+|.++++.+.. .+.+-|++
T Consensus       557 KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~  632 (776)
T COG5167         557 KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP  632 (776)
T ss_pred             hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence            11111111111111235789999999999999954333333456777889999999999987665543 56666654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.19  E-value=1.8  Score=37.14  Aligned_cols=163  Identities=14%  Similarity=0.076  Sum_probs=98.1

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCC--CeeEeeCCCCceeeeccCc-cCCeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDS--SPMLRNGETGDWIGTFEGH-KGAVWSCCLDANALFSASGSADFTAKLWDA   90 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~--~v~iw~~~~~~~~~~l~gH-~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~   90 (350)
                      -.+.....+.|..   +|.++-|.+.-|  .++.+|+++++.+....-. .----.+++..+..+. -.-..+...+||.
T Consensus        42 d~~aFTQGL~~~~---~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~q-LTWk~~~~f~yd~  117 (264)
T PF05096_consen   42 DPTAFTQGLEFLD---DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQ-LTWKEGTGFVYDP  117 (264)
T ss_dssp             -TT-EEEEEEEEE---TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEE-EESSSSEEEEEET
T ss_pred             CCcccCccEEecC---CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEE-EEecCCeEEEEcc
Confidence            3445667888853   788888888766  4788999999876543211 1112234444443343 4468899999999


Q ss_pred             CCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee----cCCCCcEEEEEEeCCCCcEEEEEeC
Q 018784           91 LTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV----GNSSGSIRTVAWLHSDQTILSSCTD  166 (350)
Q Consensus        91 ~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~s~~~  166 (350)
                      .+.+.+.++...+.-+.++  .+++.|+.......+..+|..+.+......    +..-..+..+.|.  ++.+.+-.-.
T Consensus       118 ~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~  193 (264)
T PF05096_consen  118 NTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQ  193 (264)
T ss_dssp             TTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETT
T ss_pred             ccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCC
Confidence            9888888777666666666  566777777777789999976543322111    1112234556665  4666666666


Q ss_pred             CCeEEEEECCCCceeEee
Q 018784          167 SGGVRLWDARSGKIVQTL  184 (350)
Q Consensus       167 dg~i~iwd~~~~~~~~~~  184 (350)
                      ...|...|+.+|+++..+
T Consensus       194 td~I~~Idp~tG~V~~~i  211 (264)
T PF05096_consen  194 TDRIVRIDPETGKVVGWI  211 (264)
T ss_dssp             SSEEEEEETTT-BEEEEE
T ss_pred             CCeEEEEeCCCCeEEEEE
Confidence            667888899988877655

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PHA02790 Kelch-like protein; Provisional

Probab=95.14  E-value=1.7  Score=41.35  Aligned_cols=142  Identities=10%  Similarity=0.038  Sum_probs=68.9

Q ss_pred             CccEEEEEeCCC-----CeeEeeCCCCceee--eccCccCCeEEEEECCCCcEEEEeeCC--CeEEEeeCCCCCeee--e
Q 018784           30 DGFFLVSASKDS-----SPMLRNGETGDWIG--TFEGHKGAVWSCCLDANALFSASGSAD--FTAKLWDALTGDEKH--S   98 (350)
Q Consensus        30 dg~~lasgs~d~-----~v~iw~~~~~~~~~--~l~gH~~~V~~v~~~~~~~~l~s~s~D--g~v~vWd~~~~~~~~--~   98 (350)
                      ++.+.+.|+.++     ++..||..+.++..  .+....... ++ ...++.+.+.||.+  .++..||..++.-..  .
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~-v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SG-VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eE-EEECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            456667787653     45678887776653  222111111 11 22467777777764  457788875543211  1


Q ss_pred             eeccccEeEEEEcCCCCeEEEeeCCC---eEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEEC
Q 018784           99 FEHKHIVRACAFSEDTHLLLTGGFEK---ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (350)
Q Consensus        99 ~~h~~~V~~~~~~~~~~~l~sg~~d~---~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~  175 (350)
                      +..... ......-++++.+.||.++   .+..||..+..............-.+++.  -++.+.+.|   |.+.++|.
T Consensus       349 l~~~r~-~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~G---G~~e~ydp  422 (480)
T PHA02790        349 LLKPRC-NPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVG---RNAEFYCE  422 (480)
T ss_pred             CCCCCc-ccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEEC---CceEEecC
Confidence            121111 1111233567777777553   46778876432211000000000011211  245666665   35778888


Q ss_pred             CCCc
Q 018784          176 RSGK  179 (350)
Q Consensus       176 ~~~~  179 (350)
                      ++.+
T Consensus       423 ~~~~  426 (480)
T PHA02790        423 SSNT  426 (480)
T ss_pred             CCCc
Confidence            7653

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.04  E-value=2.9  Score=38.80  Aligned_cols=167  Identities=15%  Similarity=0.197  Sum_probs=82.6

Q ss_pred             CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee---cccc-----EeEEEEcCC
Q 018784           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE---HKHI-----VRACAFSED  113 (350)
Q Consensus        42 ~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~---h~~~-----V~~~~~~~~  113 (350)
                      .|+||+. .|+.+.++.--.+.|.++.|+.+..++ .-..||.++++|... +....+.   ....     +....+..+
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G-~~~fsl~~~i~~~~v~e~~i~~~~~~~~  138 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELV-VVQSDGTVRVYDLFG-EFQFSLGEEIEEEKVLECRIFAIWFYKN  138 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEE-EEEcCCEEEEEeCCC-ceeechhhhccccCcccccccccccCCC
Confidence            4888874 566766654333889999998765554 456899999999852 2222221   1111     222233445


Q ss_pred             CCeEEEeeCCCeEEEEECCCCCC-------CCeeecCC-CCcEEE-EEEeCCCCcEEEEEeCCCeEEEEECCCCceeEee
Q 018784          114 THLLLTGGFEKILRIFDLNRPDA-------PPREVGNS-SGSIRT-VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL  184 (350)
Q Consensus       114 ~~~l~sg~~d~~v~vwd~~~~~~-------~~~~~~~~-~~~v~~-~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~  184 (350)
                      |-.+++... ..+.+=+...+..       +......+ ...... ..+. .+....+....++.+.+.+-...+   .+
T Consensus       139 GivvLt~~~-~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~-~~~~~~i~~~~g~~i~~i~~~~~~---~i  213 (410)
T PF04841_consen  139 GIVVLTGNN-RFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS-SDRVVEILLANGETIYIIDENSFK---QI  213 (410)
T ss_pred             CEEEECCCC-eEEEEeCccccchhhccccCCCcccccccccccccceEee-cCcceEEEEecCCEEEEEEccccc---cc
Confidence            544444322 2222222221100       00000000 001111 1112 122222333344556644432221   13


Q ss_pred             cCCCCeEEEEEecCCcEEEEEc-CCcEEEEECC
Q 018784          185 ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDAN  216 (350)
Q Consensus       185 ~~~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~  216 (350)
                      ....++..++++|++++++.-. ++.+.+....
T Consensus       214 ~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssD  246 (410)
T PF04841_consen  214 DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSD  246 (410)
T ss_pred             cCCCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence            3456899999999999987654 5777777643

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.94  E-value=1.8  Score=35.80  Aligned_cols=103  Identities=18%  Similarity=0.236  Sum_probs=63.7

Q ss_pred             CCcEEEEeeCCCeEEEeeCCCC--CeeeeeeccccEeEEEEcCCCCeEEEeeC------CCeEEEE-ECCCC---CCCCe
Q 018784           72 NALFSASGSADFTAKLWDALTG--DEKHSFEHKHIVRACAFSEDTHLLLTGGF------EKILRIF-DLNRP---DAPPR  139 (350)
Q Consensus        72 ~~~~l~s~s~Dg~v~vWd~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~sg~~------d~~v~vw-d~~~~---~~~~~  139 (350)
                      |-.++|  -..+.|.+|++.+.  +.+..+.--+.|..+.++..|.+|+|-=.      ...+|+| +.+..   ..+..
T Consensus        29 d~Lfva--~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~  106 (215)
T PF14761_consen   29 DALFVA--ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR  106 (215)
T ss_pred             ceEEEE--cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence            434444  34567999998733  34555666678999999999999998422      2267776 22211   11110


Q ss_pred             -ee---------------------cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC
Q 018784          140 -EV---------------------GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG  178 (350)
Q Consensus       140 -~~---------------------~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~  178 (350)
                       ..                     .+....+.+++..+-.+.+++++  ++++.+|.+...
T Consensus       107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~  165 (215)
T PF14761_consen  107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQ  165 (215)
T ss_pred             EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEE
Confidence             11                     11233566777777778888765  358999987543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.83  E-value=0.11  Score=31.58  Aligned_cols=31  Identities=16%  Similarity=0.257  Sum_probs=28.3

Q ss_pred             cccEeEEEEcCCCCeEEEeeCCCeEEEEECC
Q 018784          102 KHIVRACAFSEDTHLLLTGGFEKILRIFDLN  132 (350)
Q Consensus       102 ~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~  132 (350)
                      ...|.++.|+|...+||.+..+|.|.++.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4568999999999999999999999999984

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.64  E-value=0.18  Score=50.53  Aligned_cols=99  Identities=21%  Similarity=0.372  Sum_probs=66.0

Q ss_pred             CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-C---
Q 018784          113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-S---  188 (350)
Q Consensus       113 ~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~---  188 (350)
                      .+..++.|+.-|.+..+|+...-.+...-....++|.+++|. .++.+++.|-.+|.|.+||+..+++++.+... .   
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn-~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFN-QDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT  176 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEec-CCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence            455678888888888888764211122334456789999986 57778888899999999999999888877642 2   


Q ss_pred             CeEEEEEecCCcEEEEEc-CCcEEEEE
Q 018784          189 PVTSAEVSRDGRYITTAD-GSSVKFWD  214 (350)
Q Consensus       189 ~v~~~~~~~~~~~l~~~~-~~~i~vwd  214 (350)
                      .+..+.+..++..+.+++ +|.  +|.
T Consensus       177 ~vi~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  177 GVIFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             eEEEEEEeCCCcEEEEccCCCc--eEE
Confidence            344444555555444443 443  554

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.50  E-value=0.12  Score=51.73  Aligned_cols=71  Identities=13%  Similarity=0.216  Sum_probs=56.8

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEE---ECCCCcEEEEeeCCCeEEEeeCC
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC---LDANALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~---~~~~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      .+||.+++|+.   ||++++.|=.+|-|.+||.+.++.++.+.-|..++..+-   +..++..+.++..-|.  +|.+.
T Consensus       130 ~~~Vtsvafn~---dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  130 QGPVTSVAFNQ---DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             CCcceeeEecC---CCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            46999999986   999999999999999999999999998887777665543   4455667777766665  77754

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.20  E-value=1.8  Score=35.58  Aligned_cols=171  Identities=14%  Similarity=0.151  Sum_probs=90.9

Q ss_pred             CCCeEEEeeC--CCeEEEEECCCCCCCCeeecCC----CCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC
Q 018784          113 DTHLLLTGGF--EKILRIFDLNRPDAPPREVGNS----SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET  186 (350)
Q Consensus       113 ~~~~l~sg~~--d~~v~vwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~  186 (350)
                      ++.++.+.+.  ...|++||+..++......-..    ...++.     -+..+..-...+|.-..+|.++.+++..+..
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~-----~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y  129 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITK-----LGDYFYQLTWKEGVAFKYDADTLEELGRFSY  129 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceee-----ccceEEEEEeccceeEEEChHHhhhhccccc
Confidence            3466666554  3569999998654322221110    001111     1222333335668888899988888777766


Q ss_pred             CCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCcee----EecCCCCcEEEEecCCCeEEEEEcccCee
Q 018784          187 KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESA----SLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (350)
Q Consensus       187 ~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~sg~~d~~i~v~d~~~~~~  262 (350)
                      +..-..++-... +++.+.....+++-|..++....+.........+    .+.--+|.+++--..+..|...|..+|+.
T Consensus       130 ~GeGWgLt~d~~-~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV  208 (262)
T COG3823         130 EGEGWGLTSDDK-NLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRV  208 (262)
T ss_pred             CCcceeeecCCc-ceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcE
Confidence            555444433222 2333333346777787776655544332111110    11112456666666666666777777776


Q ss_pred             EEee------------cCCCcCEEEEEEcCCC-CEEEEec
Q 018784          263 IGCN------------KGHHGPVHCVRFSPGG-ESYASGS  289 (350)
Q Consensus       263 ~~~~------------~~h~~~v~~l~~sp~~-~~lasgs  289 (350)
                      +..+            ..|....+.+++-|++ +++++|-
T Consensus       209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             EEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence            5432            2244456789999886 5666663

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.16  E-value=4.6  Score=37.22  Aligned_cols=150  Identities=19%  Similarity=0.285  Sum_probs=73.6

Q ss_pred             CCccEEEEE--eCCCC----eeEeeCCCCceeeeccCccCC---eEEEEECCCCcEEEEee-------------------
Q 018784           29 PDGFFLVSA--SKDSS----PMLRNGETGDWIGTFEGHKGA---VWSCCLDANALFSASGS-------------------   80 (350)
Q Consensus        29 ~dg~~lasg--s~d~~----v~iw~~~~~~~~~~l~gH~~~---V~~v~~~~~~~~l~s~s-------------------   80 (350)
                      |+|.+++|+  ..+|.    +.+.|.++.+.....+...+.   -+-.-+.|....++|..                   
T Consensus       139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~  218 (461)
T PF05694_consen  139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAG  218 (461)
T ss_dssp             SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH
T ss_pred             CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcc
Confidence            377777664  33333    667888888777766553332   23444567777777763                   


Q ss_pred             -CCCeEEEeeCCCCCeeeeeecc---ccEeEEEEc--CCCCeEEEe-eCCCeE-EEEECCCCCCCCe---ee--------
Q 018784           81 -ADFTAKLWDALTGDEKHSFEHK---HIVRACAFS--EDTHLLLTG-GFEKIL-RIFDLNRPDAPPR---EV--------  141 (350)
Q Consensus        81 -~Dg~v~vWd~~~~~~~~~~~h~---~~V~~~~~~--~~~~~l~sg-~~d~~v-~vwd~~~~~~~~~---~~--------  141 (350)
                       --.++.+||..+.+.+.++...   ..+..+.|.  |+..+=.+| .-..+| ++|.-+.+....+   .+        
T Consensus       219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~  298 (461)
T PF05694_consen  219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW  298 (461)
T ss_dssp             -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred             cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence             2368999999999888877643   246677775  334333332 223333 3333222211000   00        


Q ss_pred             ---------cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC
Q 018784          142 ---------GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG  178 (350)
Q Consensus       142 ---------~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~  178 (350)
                               +...+-++.+..+-++..+.+++-.+|.|+-||+...
T Consensus       299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             ---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             cccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence                     0113457888888889999999999999999999753

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.12  E-value=0.41  Score=40.19  Aligned_cols=60  Identities=22%  Similarity=0.360  Sum_probs=43.3

Q ss_pred             CCcEEEEEeCCCeEEEEECCCCceeEee---------------cCCCCeEEEEEecCCcEEEEEcCCcEEEEECC
Q 018784          157 DQTILSSCTDSGGVRLWDARSGKIVQTL---------------ETKSPVTSAEVSRDGRYITTADGSSVKFWDAN  216 (350)
Q Consensus       157 ~~~~~~s~~~dg~i~iwd~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~  216 (350)
                      .+.+++.-+.+|.+++||+.+++.+..-               .....|..+.++.+|.-+++-+++....|+..
T Consensus        21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~   95 (219)
T PF07569_consen   21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD   95 (219)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence            4555666778899999999998765433               12345777888888887777677777888754

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.06  E-value=2.4  Score=35.49  Aligned_cols=132  Identities=14%  Similarity=0.164  Sum_probs=75.4

Q ss_pred             eEEEEECCCCcEEEEeeCC---------CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEE-EeeCCCeEEEEE--C
Q 018784           64 VWSCCLDANALFSASGSAD---------FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL-TGGFEKILRIFD--L  131 (350)
Q Consensus        64 V~~v~~~~~~~~l~s~s~D---------g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-sg~~d~~v~vwd--~  131 (350)
                      .+--..+|+|++++..-.|         |.++.|-+.. +....++.-..-+.++|..+.+.++ .-+.+-+|..||  .
T Consensus       111 ~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~  189 (310)
T KOG4499|consen  111 LNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDC  189 (310)
T ss_pred             cccCccCCCCceeeeeeccccccccccccEEEEeccCC-CceeeehhccCCccccccccCcEEEEEccCceEEeeeecCC
Confidence            3344568999997655444         3344443321 1111112222335678887776654 556788888888  3


Q ss_pred             CCCCCCCee-----ec--CCCCc-EEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEec
Q 018784          132 NRPDAPPRE-----VG--NSSGS-IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSR  197 (350)
Q Consensus       132 ~~~~~~~~~-----~~--~~~~~-v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~  197 (350)
                      .++......     ..  ..... .-.++ ...++.+.+++..-++|...|+.+|+.+.++..+ ..+++++|--
T Consensus       190 ~tG~~snr~~i~dlrk~~~~e~~~PDGm~-ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  190 PTGDLSNRKVIFDLRKSQPFESLEPDGMT-IDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             CcccccCcceeEEeccCCCcCCCCCCcce-EccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            333221110     00  00000 00111 1346778888888899999999999999998865 5688888864

>PRK13684 Ycf48-like protein; Provisional

Probab=94.03  E-value=4.4  Score=36.49  Aligned_cols=148  Identities=11%  Similarity=0.054  Sum_probs=76.3

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCee-EeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCee
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPM-LRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK   96 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~-iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~   96 (350)
                      .+.++.+.|   ++.+++++.. |.+. .++.....+...-.+-...++++.+.+++.+++.+ ..|.+++=....+..-
T Consensus       174 ~~~~i~~~~---~g~~v~~g~~-G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        174 VVRNLRRSP---DGKYVAVSSR-GNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             eEEEEEECC---CCeEEEEeCC-ceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            466776664   7777766554 5433 22222122333222334568888998888876654 5676653222222221


Q ss_pred             eeee-----ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee---cCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784           97 HSFE-----HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV---GNSSGSIRTVAWLHSDQTILSSCTDSG  168 (350)
Q Consensus        97 ~~~~-----h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~s~~~dg  168 (350)
                      ....     ....+.++.+.|++..++ ++.+|.+.. ..+.+.. ....   .......+.+.+.+++ ..++. +..|
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~t-W~~~~~~~~~~~~~~~~~~~~~~-~~~~~-G~~G  323 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKT-WEKDPVGEEVPSNFYKIVFLDPE-KGFVL-GQRG  323 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCC-CeECCcCCCCCcceEEEEEeCCC-ceEEE-CCCc
Confidence            1111     113477889999877555 445665443 2222221 1111   1122356677776544 44444 4568


Q ss_pred             eEEEEEC
Q 018784          169 GVRLWDA  175 (350)
Q Consensus       169 ~i~iwd~  175 (350)
                      .|.-|+-
T Consensus       324 ~il~~~~  330 (334)
T PRK13684        324 VLLRYVG  330 (334)
T ss_pred             eEEEecC
Confidence            8887763

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.86  E-value=3.9  Score=35.22  Aligned_cols=150  Identities=15%  Similarity=0.119  Sum_probs=86.3

Q ss_pred             ceeEEEecccCCCccEEEEEe-CCCCeeEeeCCCCceee-eccCccCCeEEEEECCCCcEEEEeeCCCeEEEee-CCCCC
Q 018784           18 PVVDLFYSPITPDGFFLVSAS-KDSSPMLRNGETGDWIG-TFEGHKGAVWSCCLDANALFSASGSADFTAKLWD-ALTGD   94 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs-~d~~v~iw~~~~~~~~~-~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd-~~~~~   94 (350)
                      .+...+.++   ||..+|... .++.-.+|-...+.... .+.+.  .+..-.|++++.+.+....+...+++. ...+.
T Consensus        25 ~~~s~AvS~---dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   25 DVTSPAVSP---DGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             cccceEECC---CCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence            455666554   887665544 33444554443333322 23443  566778899988887777777777774 33333


Q ss_pred             ee-eeee--cc-ccEeEEEEcCCCCeEEEee---CCCeEEEEECCCCCCC--C------eeecCCCCcEEEEEEeCCCCc
Q 018784           95 EK-HSFE--HK-HIVRACAFSEDTHLLLTGG---FEKILRIFDLNRPDAP--P------REVGNSSGSIRTVAWLHSDQT  159 (350)
Q Consensus        95 ~~-~~~~--h~-~~V~~~~~~~~~~~l~sg~---~d~~v~vwd~~~~~~~--~------~~~~~~~~~v~~~~~~~~~~~  159 (350)
                      .. ..+.  .. ..|..++++|||..++...   .++.|.+--+.....-  .      .........+..+.|.+++..
T Consensus       100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L  179 (253)
T PF10647_consen  100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL  179 (253)
T ss_pred             ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence            22 2222  11 2799999999999887654   3566666654321111  1      111123457889999977665


Q ss_pred             EEEEEeCCCeEEE
Q 018784          160 ILSSCTDSGGVRL  172 (350)
Q Consensus       160 ~~~s~~~dg~i~i  172 (350)
                      ++++...++.+..
T Consensus       180 ~V~~~~~~~~~~~  192 (253)
T PF10647_consen  180 VVLGRSAGGPVVR  192 (253)
T ss_pred             EEEeCCCCCceeE
Confidence            5555555544443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.63  E-value=2.5  Score=41.18  Aligned_cols=108  Identities=18%  Similarity=0.223  Sum_probs=66.4

Q ss_pred             eEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeC--CCCcEEEEEeCCCeEEEEECC-----C-
Q 018784          106 RACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLH--SDQTILSSCTDSGGVRLWDAR-----S-  177 (350)
Q Consensus       106 ~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~s~~~dg~i~iwd~~-----~-  177 (350)
                      .-+.-+.-++..++-+....+.|||...........-...+.|..+.|..  +++.+++.| ..+.|.++--.     . 
T Consensus        33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~~Q~R~dy~~~  111 (631)
T PF12234_consen   33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLYTQLRYDYTNK  111 (631)
T ss_pred             ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE-cCcEEEEEEccchhhhcC
Confidence            33444455555555555677999999866533333334578899999873  445555555 55788887431     1 


Q ss_pred             ---CceeEeec----CCCCeEEEEEecCCcEEEEEcCCcEEEEEC
Q 018784          178 ---GKIVQTLE----TKSPVTSAEVSRDGRYITTADGSSVKFWDA  215 (350)
Q Consensus       178 ---~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~  215 (350)
                         -..+..+.    ...+|.+..|.++|.+++++ ++.+.++|-
T Consensus       112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen  112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK  155 (631)
T ss_pred             CcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence               12333332    23578888999999877654 557777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=93.60  E-value=6.1  Score=36.65  Aligned_cols=143  Identities=10%  Similarity=0.147  Sum_probs=86.3

Q ss_pred             CCcEEEEEeCCCeEEEEECCCCc-----eeEeecCCCCeEEEEEec-----CCcEEEEEcCCcEEEEECCC---------
Q 018784          157 DQTILSSCTDSGGVRLWDARSGK-----IVQTLETKSPVTSAEVSR-----DGRYITTADGSSVKFWDANH---------  217 (350)
Q Consensus       157 ~~~~~~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~~~i~vwd~~~---------  217 (350)
                      +...++.|+..|.++|++.....     .+.+.+...||..+..-+     +...|+.-.=+.+.+|.+..         
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence            44567788999999999986543     445555667887776432     23455555555666776521         


Q ss_pred             -c--ceeeeeecCCCCceeE---ecC-CCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecC
Q 018784          218 -F--GLVKGYNMPCNTESAS---LEP-KLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSE  290 (350)
Q Consensus       218 -~--~~~~~~~~~~~~~~~~---~~~-~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~  290 (350)
                       .  ..+..+.++.......   |-. .....+.+-+.||.+.+|+-+..-..+.+.+ .--...+.|.|....|++++.
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss  194 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS  194 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence             1  1122222222111111   111 1247888999999999998554332333332 222345778888889999999


Q ss_pred             CCcEEEecCC
Q 018784          291 DGTIRIWQTN  300 (350)
Q Consensus       291 Dg~v~vw~~~  300 (350)
                      +..|..|.+.
T Consensus       195 s~~l~~Yky~  204 (418)
T PF14727_consen  195 SWTLECYKYQ  204 (418)
T ss_pred             ceeEEEecHH
Confidence            9999998763

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.02  E-value=8.7  Score=36.74  Aligned_cols=148  Identities=16%  Similarity=0.197  Sum_probs=82.8

Q ss_pred             CCeEEEEECCCCcEEEEee--CCCeEEEeeCCCCCeeeeeeccccEeEEEEcCC----CCeEEEeeCCCeEEEEECCCCC
Q 018784           62 GAVWSCCLDANALFSASGS--ADFTAKLWDALTGDEKHSFEHKHIVRACAFSED----THLLLTGGFEKILRIFDLNRPD  135 (350)
Q Consensus        62 ~~V~~v~~~~~~~~l~s~s--~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~----~~~l~sg~~d~~v~vwd~~~~~  135 (350)
                      .+|..++|..-.+.+.|.=  ..|.+++=|   ...+..++|   |..+.|.|-    ...|++......|.||.+....
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqFEh---V~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~   93 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQFEH---VHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST   93 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeeccce---eeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence            4677888864444444431  223322222   123334445   889999875    3356677788899999975211


Q ss_pred             -CCCeeecCCCC--------cEEEEEEeCCCCcEEEEEeCCCeEEEEECC--CCceeEeecCCCCeEEEEEecCCcEEEE
Q 018784          136 -APPREVGNSSG--------SIRTVAWLHSDQTILSSCTDSGGVRLWDAR--SGKIVQTLETKSPVTSAEVSRDGRYITT  204 (350)
Q Consensus       136 -~~~~~~~~~~~--------~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~  204 (350)
                       ...+.......        -...+.|.|....+.+-...| .-.+.+++  +.+....++..+-|.+.+|.+||+.|+.
T Consensus        94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d-vSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVV  172 (671)
T PF15390_consen   94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD-VSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVV  172 (671)
T ss_pred             cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc-eeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEE
Confidence             11111111111        123355665444443333343 33445554  3455566778888999999999988877


Q ss_pred             EcCC--cEEEEECC
Q 018784          205 ADGS--SVKFWDAN  216 (350)
Q Consensus       205 ~~~~--~i~vwd~~  216 (350)
                      +-+.  +-.+||-.
T Consensus       173 AvGSsLHSyiWd~~  186 (671)
T PF15390_consen  173 AVGSSLHSYIWDSA  186 (671)
T ss_pred             EeCCeEEEEEecCc
Confidence            6554  45788854

>PRK10115 protease 2; Provisional

Probab=92.74  E-value=12  Score=37.50  Aligned_cols=191  Identities=11%  Similarity=0.019  Sum_probs=95.6

Q ss_pred             cEeEEEEcCCCCeEEEe-----eCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC-----CeEEEE
Q 018784          104 IVRACAFSEDTHLLLTG-----GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-----GGVRLW  173 (350)
Q Consensus       104 ~V~~~~~~~~~~~l~sg-----~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-----g~i~iw  173 (350)
                      .+..+.++|++++|+-+     +....|++-|+.++......+...   -..++|.++++.++.+..++     ..|..+
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h  204 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH  204 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence            35677889999988754     233458888887654322222221   14588987777777765433     368888


Q ss_pred             ECCCC--ceeEeecC-CCCeE-EEEEecCCcEEEEE----cCCcEEEEECCC--cceeeeeecCCCCceeEecCCCCcEE
Q 018784          174 DARSG--KIVQTLET-KSPVT-SAEVSRDGRYITTA----DGSSVKFWDANH--FGLVKGYNMPCNTESASLEPKLGNIF  243 (350)
Q Consensus       174 d~~~~--~~~~~~~~-~~~v~-~~~~~~~~~~l~~~----~~~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (350)
                      ++.++  +....+.. ..... ....+.++++++..    .++.+.+++...  .........+... ........+.++
T Consensus       205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ly  283 (686)
T PRK10115        205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDH-EYSLDHYQHRFY  283 (686)
T ss_pred             ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCC-EEEEEeCCCEEE
Confidence            88877  32222222 22222 33334477765432    245788888432  2211111111111 111111122333


Q ss_pred             EEecCC---CeEEEEEcccCeeEEeecCC-C-cCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          244 IAGGED---MWVHVFDFHTGEQIGCNKGH-H-GPVHCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       244 ~sg~~d---~~i~v~d~~~~~~~~~~~~h-~-~~v~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                      +....+   ..|...++........+..+ . ..|..+.+. .+.++++...++.-+++-+
T Consensus       284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~  343 (686)
T PRK10115        284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI  343 (686)
T ss_pred             EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence            332222   23333344421222333344 2 357777776 3356667777777666544

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.70  E-value=3.5  Score=40.14  Aligned_cols=105  Identities=19%  Similarity=0.335  Sum_probs=65.7

Q ss_pred             EECCCCcEEEEeeCCCeEEEeeCCCCCeee--eeeccccEeEEEE--cCCCCeEEEeeCCCeEEEEECCCCC-------C
Q 018784           68 CLDANALFSASGSADFTAKLWDALTGDEKH--SFEHKHIVRACAF--SEDTHLLLTGGFEKILRIFDLNRPD-------A  136 (350)
Q Consensus        68 ~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~--~~~h~~~V~~~~~--~~~~~~l~sg~~d~~v~vwd~~~~~-------~  136 (350)
                      .-+.-++..+.-+.-..+.|||...+....  .+...+.|..++|  .|+++.+++.|..+.|.++.-....       .
T Consensus        36 ~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w  115 (631)
T PF12234_consen   36 SGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSW  115 (631)
T ss_pred             eecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccc
Confidence            333445554445556789999997776333  2345778999988  5799999999999999999642111       0


Q ss_pred             -CCee--ecC-CCCcEEEEEEeCCCCcEEEEEeCCCeEEEEEC
Q 018784          137 -PPRE--VGN-SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (350)
Q Consensus       137 -~~~~--~~~-~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~  175 (350)
                       +.+.  ... ...+|.+..|..+ +.++++++  +.+.|+|-
T Consensus       116 ~~i~~i~i~~~T~h~Igds~Wl~~-G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  116 APIRKIDISSHTPHPIGDSIWLKD-GTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             ceeEEEEeecCCCCCccceeEecC-CeEEEEeC--CEEEEECC
Confidence             1111  111 2245777888754 44444433  57888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.38  E-value=0.045  Score=53.63  Aligned_cols=158  Identities=17%  Similarity=0.186  Sum_probs=88.4

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEE-----------EECCCCcEEEEeeCCCeEE
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSC-----------CLDANALFSASGSADFTAK   86 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v-----------~~~~~~~~l~s~s~Dg~v~   86 (350)
                      ++.-|.++|+-+...++-.+-.++++++....+-.. ..+.+|...+.-+           .++|||..+|.++.||.++
T Consensus       182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~  260 (1283)
T KOG1916|consen  182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVG  260 (1283)
T ss_pred             CcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccc
Confidence            345667778777777777777888888755333222 4556677665433           3689999999999999999


Q ss_pred             EeeCC-CCC----eeeee-eccc--cEeEEEEcCCC---------CeEEEe-eCCCeEEEEECCCCCCCCe-------ee
Q 018784           87 LWDAL-TGD----EKHSF-EHKH--IVRACAFSEDT---------HLLLTG-GFEKILRIFDLNRPDAPPR-------EV  141 (350)
Q Consensus        87 vWd~~-~~~----~~~~~-~h~~--~V~~~~~~~~~---------~~l~sg-~~d~~v~vwd~~~~~~~~~-------~~  141 (350)
                      .|.+. +++    +++.+ .|.+  .|+.+ |+.+.         .+++++ ..++.+++|.....++...       ..
T Consensus       261 f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV  339 (1283)
T KOG1916|consen  261 FYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIV  339 (1283)
T ss_pred             eeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceEee
Confidence            99864 333    22222 2442  24444 44332         234444 4467789998654443311       11


Q ss_pred             cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCC
Q 018784          142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS  177 (350)
Q Consensus       142 ~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~  177 (350)
                      +.|.+.++......---..+++-.-|++|++|.-+.
T Consensus       340 ~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~  375 (1283)
T KOG1916|consen  340 GPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK  375 (1283)
T ss_pred             cCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence            233333322110000001133445678888887554

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.08  E-value=1.9  Score=44.09  Aligned_cols=112  Identities=16%  Similarity=0.112  Sum_probs=72.1

Q ss_pred             CCeEEEEEecCCcEEEE---EcCCcEEEEECCCcceeeeee------------cCCCCceeEecCCCCcEEEEecCCCeE
Q 018784          188 SPVTSAEVSRDGRYITT---ADGSSVKFWDANHFGLVKGYN------------MPCNTESASLEPKLGNIFIAGGEDMWV  252 (350)
Q Consensus       188 ~~v~~~~~~~~~~~l~~---~~~~~i~vwd~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~sg~~d~~i  252 (350)
                      .++..+.+.+|+...++   .++-.|.+||++++.......            .........+.|......++...|+.|
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            34555666677655432   334468899998754332111            112233344555555667888889999


Q ss_pred             EEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          253 HVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       253 ~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                      ++..+........--......++++|+|.|+.++.|-..|++..|.-
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P  227 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP  227 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeec
Confidence            98877543332222233456899999999999999999999999853

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.03  E-value=0.73  Score=27.32  Aligned_cols=32  Identities=25%  Similarity=0.429  Sum_probs=24.9

Q ss_pred             CcEEEEEEeCCCC--cEEEEEeCCCeEEEEECCC
Q 018784          146 GSIRTVAWLHSDQ--TILSSCTDSGGVRLWDARS  177 (350)
Q Consensus       146 ~~v~~~~~~~~~~--~~~~s~~~dg~i~iwd~~~  177 (350)
                      +.++++.|+|...  .+++-...-+.|.++|+|+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4688999997554  5666666778999999995

It contains a characteristic DLL sequence motif.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.93  E-value=5  Score=40.03  Aligned_cols=35  Identities=20%  Similarity=0.367  Sum_probs=27.9

Q ss_pred             CCcCEEEEEEcCC---CCEEEEecCCCcEEEecCCCCC
Q 018784          269 HHGPVHCVRFSPG---GESYASGSEDGTIRIWQTNPPN  303 (350)
Q Consensus       269 h~~~v~~l~~sp~---~~~lasgs~Dg~v~vw~~~~~~  303 (350)
                      +...|..+.|+|.   +..|+.=..|+++|+||+..+.
T Consensus       145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence            4456889999987   4778888899999999986444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=91.81  E-value=16  Score=36.94  Aligned_cols=147  Identities=18%  Similarity=0.247  Sum_probs=82.8

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEeecCCCCeE----------------EEEEecCCcEEEEEc----------CCcEEEE
Q 018784          160 ILSSCTDSGGVRLWDARSGKIVQTLETKSPVT----------------SAEVSRDGRYITTAD----------GSSVKFW  213 (350)
Q Consensus       160 ~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~----------------~~~~~~~~~~l~~~~----------~~~i~vw  213 (350)
                      .++.++.|+.+.-.|.++|+.+..+..+..+.                +--.--++..++.+.          ++.|+-+
T Consensus       262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~  341 (764)
T TIGR03074       262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF  341 (764)
T ss_pred             EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence            45556778999999999999887765433221                100111455555432          4679999


Q ss_pred             ECCCcceeeeeecCC------------------CC-ceeEecCCCCcEEEE-e----------------cCCCeEEEEEc
Q 018784          214 DANHFGLVKGYNMPC------------------NT-ESASLEPKLGNIFIA-G----------------GEDMWVHVFDF  257 (350)
Q Consensus       214 d~~~~~~~~~~~~~~------------------~~-~~~~~~~~~~~~l~s-g----------------~~d~~i~v~d~  257 (350)
                      |.++++.+-.+....                  +. ...++.+..+.+++- |                -..+.|.-.|.
T Consensus       342 Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~  421 (764)
T TIGR03074       342 DVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDA  421 (764)
T ss_pred             ECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeC
Confidence            999988876654310                  00 112222222222221 1                11345666777


Q ss_pred             ccCeeEEeecC-CCc--------CEEEEEEcC-CC---CEEEEecCCCcEEEecCCCCCccc
Q 018784          258 HTGEQIGCNKG-HHG--------PVHCVRFSP-GG---ESYASGSEDGTIRIWQTNPPNHEE  306 (350)
Q Consensus       258 ~~~~~~~~~~~-h~~--------~v~~l~~sp-~~---~~lasgs~Dg~v~vw~~~~~~~~~  306 (350)
                      ++|+..=.++. |++        ...-+.+.. +|   +.++.++.+|.+++.|..+.+.+-
T Consensus       422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~  483 (764)
T TIGR03074       422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV  483 (764)
T ss_pred             CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence            88876544432 221        111122322 55   378899999999999988766553

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=91.66  E-value=5  Score=39.38  Aligned_cols=68  Identities=9%  Similarity=0.006  Sum_probs=45.3

Q ss_pred             CCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEEC
Q 018784           62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL  131 (350)
Q Consensus        62 ~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~  131 (350)
                      ..+.++.-+|.++.++++..||+|++++..............+-..+.|...|  |++...|+.+..|.-
T Consensus        15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~   82 (1636)
T KOG3616|consen   15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWKE   82 (1636)
T ss_pred             ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheeec
Confidence            34566777899999999999999999997654432222222233445565555  666667777777753

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=91.16  E-value=11  Score=33.88  Aligned_cols=57  Identities=25%  Similarity=0.350  Sum_probs=40.5

Q ss_pred             CCcEEEEecCCCeEEEEEcccCeeEE---e-ecCCCcCEEEEEEcCCCCEEEEecCCCcEE
Q 018784          239 LGNIFIAGGEDMWVHVFDFHTGEQIG---C-NKGHHGPVHCVRFSPGGESYASGSEDGTIR  295 (350)
Q Consensus       239 ~~~~l~sg~~d~~i~v~d~~~~~~~~---~-~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~  295 (350)
                      .+.+|++.-..+.|....+.++..+.   . +......+..+++.|||.++++-..+|.|+
T Consensus       270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            35677777777889888887554322   2 234555899999999999998888888875

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.12  E-value=2  Score=43.94  Aligned_cols=133  Identities=14%  Similarity=0.078  Sum_probs=80.0

Q ss_pred             CccE--EEEEeCCCCeeEeeCCCCce-----eeeccCcc----CC--eEEEEECCCC-cEEEEeeCCCeEEEeeCCCCC-
Q 018784           30 DGFF--LVSASKDSSPMLRNGETGDW-----IGTFEGHK----GA--VWSCCLDANA-LFSASGSADFTAKLWDALTGD-   94 (350)
Q Consensus        30 dg~~--lasgs~d~~v~iw~~~~~~~-----~~~l~gH~----~~--V~~v~~~~~~-~~l~s~s~Dg~v~vWd~~~~~-   94 (350)
                      |+.+  ++..+++..|..+|+.+...     ..-|..|.    ..  ..++.|.|.- ...+....|+.|++.-+.... 
T Consensus       111 D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~  190 (1405)
T KOG3630|consen  111 DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQ  190 (1405)
T ss_pred             CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhh
Confidence            6543  34445545677788754321     12223332    22  2345566543 345667889999998764332 


Q ss_pred             eeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCC--CCeeecCCCCcEEEEEEeCCCCcEEE
Q 018784           95 EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA--PPREVGNSSGSIRTVAWLHSDQTILS  162 (350)
Q Consensus        95 ~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~  162 (350)
                      ....+.....+++++|+|-|+.++.|-..|++.-|...-...  ...........|.++.|......+++
T Consensus       191 ~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  191 NVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             hhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            233345667889999999999999999999999986542210  00111112467999999876554433

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.03  E-value=1.3  Score=25.75  Aligned_cols=38  Identities=13%  Similarity=0.193  Sum_probs=26.8

Q ss_pred             CCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEE
Q 018784          156 SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSA  193 (350)
Q Consensus       156 ~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~  193 (350)
                      +++.++++...+++|.++|..+++.+..+........+
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i   39 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGV   39 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceE
Confidence            35567777777889999999888877776654333333

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=90.67  E-value=10  Score=32.62  Aligned_cols=142  Identities=15%  Similarity=0.059  Sum_probs=82.5

Q ss_pred             CeEEEEECCCCcEEEEee---CCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEE-CCCCCCCC
Q 018784           63 AVWSCCLDANALFSASGS---ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFD-LNRPDAPP  138 (350)
Q Consensus        63 ~V~~v~~~~~~~~l~s~s---~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd-~~~~~~~~  138 (350)
                      .+...++++++..+|...   ....+.++..  +.....+.-...+..-.|.+++...+....+...+++. ...+....
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            577889999998665443   3344555543  33222222223567778899977666666666777773 22222222


Q ss_pred             eeecCC--CCcEEEEEEeCCCCcEEEEE--eCCCeEEEEECC---CCce------eEeec-CCCCeEEEEEecCCcEEEE
Q 018784          139 REVGNS--SGSIRTVAWLHSDQTILSSC--TDSGGVRLWDAR---SGKI------VQTLE-TKSPVTSAEVSRDGRYITT  204 (350)
Q Consensus       139 ~~~~~~--~~~v~~~~~~~~~~~~~~s~--~~dg~i~iwd~~---~~~~------~~~~~-~~~~v~~~~~~~~~~~l~~  204 (350)
                      ......  .+.|..+.+++++.++++..  ..++.|.+=-+.   .+..      +.... ....+..+.|.+++.+++.
T Consensus       103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~  182 (253)
T PF10647_consen  103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL  182 (253)
T ss_pred             EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence            222111  12799999998887776654  334667766542   2211      11111 1357889999999988876


Q ss_pred             Ec
Q 018784          205 AD  206 (350)
Q Consensus       205 ~~  206 (350)
                      ..
T Consensus       183 ~~  184 (253)
T PF10647_consen  183 GR  184 (253)
T ss_pred             eC
Confidence            54

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=90.66  E-value=0.91  Score=26.92  Aligned_cols=31  Identities=32%  Similarity=0.611  Sum_probs=25.5

Q ss_pred             cCEEEEEEcCCC---CEEEEecCCCcEEEecCCC
Q 018784          271 GPVHCVRFSPGG---ESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       271 ~~v~~l~~sp~~---~~lasgs~Dg~v~vw~~~~  301 (350)
                      +.|.++.|||..   .+|+-.-.-+.|.|+|++.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999854   4888888889999999873

It contains a characteristic DLL sequence motif.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=90.47  E-value=14  Score=33.81  Aligned_cols=139  Identities=17%  Similarity=0.205  Sum_probs=71.5

Q ss_pred             EEEEECCCCcEEEEee-----------CCC-eEEEeeCCCC--C--eeeee-eccccEeEEEEcCCCCeEEEeeCCCeEE
Q 018784           65 WSCCLDANALFSASGS-----------ADF-TAKLWDALTG--D--EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILR  127 (350)
Q Consensus        65 ~~v~~~~~~~~l~s~s-----------~Dg-~v~vWd~~~~--~--~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~  127 (350)
                      ..++|.++|.++++-.           ..+ .|.+++-..+  +  ....+ ..-.....+++.+++ + +.+.....++
T Consensus        17 ~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-l-yV~~~~~i~~   94 (367)
T TIGR02604        17 IAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-V-YVATPPDILF   94 (367)
T ss_pred             ceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-E-EEeCCCeEEE
Confidence            4678888888777642           223 6777764432  2  12222 223456889999988 4 4445554444


Q ss_pred             EEECCCCC-C--CCe-e---ecC----CCCcEEEEEEeCCCCcEEEEEeCC-------------------CeEEEEECCC
Q 018784          128 IFDLNRPD-A--PPR-E---VGN----SSGSIRTVAWLHSDQTILSSCTDS-------------------GGVRLWDARS  177 (350)
Q Consensus       128 vwd~~~~~-~--~~~-~---~~~----~~~~v~~~~~~~~~~~~~~s~~~d-------------------g~i~iwd~~~  177 (350)
                      +.|..... .  ..+ .   ...    +......+.|.+ ++.+.++-+..                   +.|.-+|...
T Consensus        95 ~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg  173 (367)
T TIGR02604        95 LRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG  173 (367)
T ss_pred             EeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence            54543211 0  111 1   111    122355677765 44555543311                   3455555554


Q ss_pred             CceeEeecCCCCeEEEEEecCCcEEEEEc
Q 018784          178 GKIVQTLETKSPVTSAEVSRDGRYITTAD  206 (350)
Q Consensus       178 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  206 (350)
                      ++.............++|+++|+++++..
T Consensus       174 ~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       174 GKLRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             CeEEEEecCcCCCccceECCCCCEEEEcc
Confidence            44322222223345788999998887654

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.38  E-value=8.7  Score=36.09  Aligned_cols=138  Identities=13%  Similarity=0.175  Sum_probs=82.2

Q ss_pred             EEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCC--------cEEEEeeCCCeEEEeeCC-CCCeeeeeeccc
Q 018784           33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA--------LFSASGSADFTAKLWDAL-TGDEKHSFEHKH  103 (350)
Q Consensus        33 ~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~--------~~l~s~s~Dg~v~vWd~~-~~~~~~~~~h~~  103 (350)
                      ++..|..-.++.=.|++.|+.+-+..-|...|  |.+.|..        +.|+. -+|..|.--|.. .+..+.....+.
T Consensus       482 i~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvG-lS~~svFrIDPR~~gNKi~v~esKd  558 (776)
T COG5167         482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVG-LSDYSVFRIDPRARGNKIKVVESKD  558 (776)
T ss_pred             EEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEe-ecccceEEecccccCCceeeeeehh
Confidence            34555566666667888899988888887664  5666532        34443 344444444432 232222222222


Q ss_pred             cEeEEEE----cCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECC
Q 018784          104 IVRACAF----SEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR  176 (350)
Q Consensus       104 ~V~~~~~----~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~  176 (350)
                      .+.--.|    .-...++|.+|..|-||+||--..... ..+......|..+....++..++++|-  .++.+-|++
T Consensus       559 Y~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAK-talP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~  632 (776)
T COG5167         559 YKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAK-TALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVP  632 (776)
T ss_pred             ccccccccccccccCceEEEecCCCceeeehhhcchhh-hcCcccccceeeeEeecCCcEEEEeec--ceEEEEecc
Confidence            2222223    234458999999999999996432211 222334556777777777888888885  478888875

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.37  E-value=3.6  Score=41.05  Aligned_cols=33  Identities=15%  Similarity=0.301  Sum_probs=21.8

Q ss_pred             ccEeEEEEcCC---CCeEEEeeCCCeEEEEECCCCC
Q 018784          103 HIVRACAFSED---THLLLTGGFEKILRIFDLNRPD  135 (350)
Q Consensus       103 ~~V~~~~~~~~---~~~l~sg~~d~~v~vwd~~~~~  135 (350)
                      -.|..+.|||.   +..|+.=..|+++|+||+..+.
T Consensus       147 ~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  147 LEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             ceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence            34667777765   3566666777777777776544

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=89.74  E-value=17  Score=33.72  Aligned_cols=187  Identities=12%  Similarity=0.072  Sum_probs=79.7

Q ss_pred             CcEEEE-eeCCCeEEEeeCCCCCe---e-eeee----cc----ccEeEEEEcCCCCeEEEe--eCC----CeEEEEECCC
Q 018784           73 ALFSAS-GSADFTAKLWDALTGDE---K-HSFE----HK----HIVRACAFSEDTHLLLTG--GFE----KILRIFDLNR  133 (350)
Q Consensus        73 ~~~l~s-~s~Dg~v~vWd~~~~~~---~-~~~~----h~----~~V~~~~~~~~~~~l~sg--~~d----~~v~vwd~~~  133 (350)
                      -++|+. |=....|.|.|+.+...   + .+++    +.    .....+..-|+|.+++|+  ..+    |.+.+.|-++
T Consensus        87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t  166 (461)
T PF05694_consen   87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET  166 (461)
T ss_dssp             S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred             CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence            344444 44778999999874321   1 1222    11    122334446788888874  222    4466666553


Q ss_pred             CCCCCeeecC--CCCcEEEEEEeCCCCcEEEEEe--------------------CCCeEEEEECCCCceeEeecCCC---
Q 018784          134 PDAPPREVGN--SSGSIRTVAWLHSDQTILSSCT--------------------DSGGVRLWDARSGKIVQTLETKS---  188 (350)
Q Consensus       134 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~s~~--------------------~dg~i~iwd~~~~~~~~~~~~~~---  188 (350)
                      .+........  ...--+.+-|.+ ...+++|..                    .-+++.+||.++.+.++++....   
T Consensus       167 f~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  167 FEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             --EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             ccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            3222111111  112233343433 344444432                    23589999999999999988642   


Q ss_pred             CeEEEEEe--cCCcEE--EEEcCCcEEEE-ECCCc--ceeeeeec--------------------CCCCceeEecCCCCc
Q 018784          189 PVTSAEVS--RDGRYI--TTADGSSVKFW-DANHF--GLVKGYNM--------------------PCNTESASLEPKLGN  241 (350)
Q Consensus       189 ~v~~~~~~--~~~~~l--~~~~~~~i~vw-d~~~~--~~~~~~~~--------------------~~~~~~~~~~~~~~~  241 (350)
                      -...+.|.  |+..+-  .++-..+|..| .....  ...+....                    +.....+.++.++.-
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf  325 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF  325 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence            24456665  334332  22333344333 21221  11111111                    222344556666677


Q ss_pred             EEEEecCCCeEEEEEcccC
Q 018784          242 IFIAGGEDMWVHVFDFHTG  260 (350)
Q Consensus       242 ~l~sg~~d~~i~v~d~~~~  260 (350)
                      +++++..+|.|+.||+.+.
T Consensus       326 LYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  326 LYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             EEEEETTTTEEEEEE-SST
T ss_pred             EEEEcccCCcEEEEecCCC
Confidence            8888999999999999764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=89.70  E-value=6.3  Score=36.48  Aligned_cols=34  Identities=12%  Similarity=-0.024  Sum_probs=27.6

Q ss_pred             cEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCC
Q 018784          104 IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP  137 (350)
Q Consensus       104 ~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~  137 (350)
                      .+.++..+|++++.++...=|.|.++|+......
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vv  342 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVV  342 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhh
Confidence            4678899999998888777799999999765433

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=88.47  E-value=20  Score=32.87  Aligned_cols=11  Identities=36%  Similarity=0.821  Sum_probs=8.0

Q ss_pred             CCcEEEEecCC
Q 018784          239 LGNIFIAGGED  249 (350)
Q Consensus       239 ~~~~l~sg~~d  249 (350)
                      .+++++.|+.+
T Consensus       279 ~~~iyv~GG~~  289 (376)
T PRK14131        279 NGVLLVAGGAN  289 (376)
T ss_pred             CCEEEEeeccC
Confidence            46788888854

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=87.84  E-value=4.2  Score=37.48  Aligned_cols=163  Identities=10%  Similarity=0.051  Sum_probs=92.6

Q ss_pred             eeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCee-eee-ec-cc----cEe-EEEEcCCCCeEEEeeCCCeE
Q 018784           55 GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK-HSF-EH-KH----IVR-ACAFSEDTHLLLTGGFEKIL  126 (350)
Q Consensus        55 ~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~-~~~-~h-~~----~V~-~~~~~~~~~~l~sg~~d~~v  126 (350)
                      +.+..-...|..+-+.||++.+..-+. ..+.|+++...... ..+ .. ++    .|. ++..-..|.-++.++.||.|
T Consensus       214 ~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~v  292 (733)
T COG4590         214 RLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLV  292 (733)
T ss_pred             hhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCce
Confidence            334444455666778899987765433 66777776544311 111 11 11    122 22223345668888999999


Q ss_pred             EEE-ECCCCCCCCe-eecCC---CCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcE
Q 018784          127 RIF-DLNRPDAPPR-EVGNS---SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRY  201 (350)
Q Consensus       127 ~vw-d~~~~~~~~~-~~~~~---~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~  201 (350)
                      .-| |+.+...+.. .....   ...+..+. -....+-+++-+..|++.++-..+.+.+..-........+.++|++.+
T Consensus       293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~-pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~  371 (733)
T COG4590         293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLL-PETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAY  371 (733)
T ss_pred             eeeeeeecCCCCcceeeeccccCcccceeec-cccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccch
Confidence            888 5544332211 11000   11121111 112344566777778888876655554433333345667889999999


Q ss_pred             EEEEcCCcEEEEECCCcc
Q 018784          202 ITTADGSSVKFWDANHFG  219 (350)
Q Consensus       202 l~~~~~~~i~vwd~~~~~  219 (350)
                      +..-+.+.++++.+.+..
T Consensus       372 Ll~e~~gki~~~~l~Nr~  389 (733)
T COG4590         372 LLSEDQGKIRLAQLENRN  389 (733)
T ss_pred             heeecCCceEEEEecCCC
Confidence            999889999999876543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=87.82  E-value=23  Score=32.88  Aligned_cols=89  Identities=22%  Similarity=0.329  Sum_probs=53.5

Q ss_pred             EEEEcCCCCeEEEeeCCCeEEE---EECCCCC-CCC-e---eec----CCCCcEEEEEEeC----------CCCcEEEEE
Q 018784          107 ACAFSEDTHLLLTGGFEKILRI---FDLNRPD-APP-R---EVG----NSSGSIRTVAWLH----------SDQTILSSC  164 (350)
Q Consensus       107 ~~~~~~~~~~l~sg~~d~~v~v---wd~~~~~-~~~-~---~~~----~~~~~v~~~~~~~----------~~~~~~~s~  164 (350)
                      .++.+|++..|+.+..++.+-+   |+..... ... .   ..+    .....|+++.|.|          ++..+++.|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            4577899999988877777665   5432111 111 0   011    1114678877654          245788999


Q ss_pred             eCCCeEEEEECCCCce-eEeecCCCCeEEEEEe
Q 018784          165 TDSGGVRLWDARSGKI-VQTLETKSPVTSAEVS  196 (350)
Q Consensus       165 ~~dg~i~iwd~~~~~~-~~~~~~~~~v~~~~~~  196 (350)
                      ..+|.|++|.. +|.. +.+.-++.+|..+.+.
T Consensus        86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~  117 (415)
T PF14655_consen   86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR  117 (415)
T ss_pred             ecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence            99999999985 4443 2333345666666553

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=87.56  E-value=3.7  Score=39.76  Aligned_cols=37  Identities=22%  Similarity=0.288  Sum_probs=27.9

Q ss_pred             CeEEEEECC----CCcEEEEeeCCCeEEEeeCCCCCeeeee
Q 018784           63 AVWSCCLDA----NALFSASGSADFTAKLWDALTGDEKHSF   99 (350)
Q Consensus        63 ~V~~v~~~~----~~~~l~s~s~Dg~v~vWd~~~~~~~~~~   99 (350)
                      .+..++++.    +..++++-+.|+++|+||+.+++++.+.
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            345556665    6789999999999999999999885544

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=87.53  E-value=6.8  Score=32.89  Aligned_cols=60  Identities=15%  Similarity=0.206  Sum_probs=38.7

Q ss_pred             CccEEEEEeCCCCeeEeeCCCCceeee-------cc-------CccCCeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784           30 DGFFLVSASKDSSPMLRNGETGDWIGT-------FE-------GHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (350)
Q Consensus        30 dg~~lasgs~d~~v~iw~~~~~~~~~~-------l~-------gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~   90 (350)
                      .+.+|+.-+.+|.+++||+.+++.+..       +.       .....|..+.++.+|.-+++-+ +|....|+.
T Consensus        21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence            577899999999999999998876432       11       2334555566666665555433 345555554

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.08  E-value=5.9  Score=31.82  Aligned_cols=30  Identities=20%  Similarity=0.351  Sum_probs=25.4

Q ss_pred             cCEEEEEEcCCC------CEEEEecCCCcEEEecCC
Q 018784          271 GPVHCVRFSPGG------ESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       271 ~~v~~l~~sp~~------~~lasgs~Dg~v~vw~~~  300 (350)
                      ..|.+++|||-|      .+||.-..++.|.||...
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            378999999954      578999999999999754

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.01  E-value=31  Score=36.12  Aligned_cols=25  Identities=20%  Similarity=0.291  Sum_probs=21.6

Q ss_pred             CCCcEEEEecCCCeEEEEEcccCee
Q 018784          238 KLGNIFIAGGEDMWVHVFDFHTGEQ  262 (350)
Q Consensus       238 ~~~~~l~sg~~d~~i~v~d~~~~~~  262 (350)
                      ..+..++++..|+.+..||...+..
T Consensus       244 ~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  244 RDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             cCCceEEEEEecCCEEeeecCCCce
Confidence            4578999999999999999988754

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=86.92  E-value=26  Score=32.46  Aligned_cols=144  Identities=12%  Similarity=0.023  Sum_probs=78.8

Q ss_pred             EEEEECCCCcEEEEeeCCCeEEEeeCCCCC-eeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCC----CCe
Q 018784           65 WSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA----PPR  139 (350)
Q Consensus        65 ~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~----~~~  139 (350)
                      ..+...+++.+++.+..-..++-||..... ..........+.++.+.+++.+++++ .+|.+..= ...+..    ...
T Consensus       242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S-~d~G~~~~~~~f~  319 (398)
T PLN00033        242 STVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVS-KGTGLTEEDFDFE  319 (398)
T ss_pred             eeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEe-cCCCCccccccee
Confidence            344556777776655444444445532211 22223344568899999999877765 44554332 222210    111


Q ss_pred             eecC--CCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec----CCCCeEEEEEecCCcEEEEEcCCcEEEE
Q 018784          140 EVGN--SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE----TKSPVTSAEVSRDGRYITTADGSSVKFW  213 (350)
Q Consensus       140 ~~~~--~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~i~vw  213 (350)
                      ....  ....+..+.+.+ ++.++++| ..|.+.... ..|+......    .......+.|.++++.++.+.+|.|--|
T Consensus       320 ~~~~~~~~~~l~~v~~~~-d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~  396 (398)
T PLN00033        320 EADIKSRGFGILDVGYRS-KKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY  396 (398)
T ss_pred             ecccCCCCcceEEEEEcC-CCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence            1111  122477787764 44455554 557666553 4455433332    1346778888888899999988876544

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=86.91  E-value=0.16  Score=46.64  Aligned_cols=139  Identities=12%  Similarity=0.176  Sum_probs=86.8

Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEE--EEcCCcEEEEECCCcceeeeeecC
Q 018784          150 TVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT--TADGSSVKFWDANHFGLVKGYNMP  227 (350)
Q Consensus       150 ~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~  227 (350)
                      ...|.+.+..++++|.. -.+..|| +.++....+........++|..++..++  +...+.+.+||+.+...- .+...
T Consensus        39 ~~~w~~e~~nlavaca~-tiv~~YD-~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qLE~g  115 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACAN-TIVIYYD-KAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QLESG  115 (615)
T ss_pred             eeeEecCCCceehhhhh-hHHHhhh-hhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HHhcc
Confidence            44567777776666654 5788888 4455555555666677788887776543  334678999998753211 11111


Q ss_pred             CC-CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCC
Q 018784          228 CN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG  292 (350)
Q Consensus       228 ~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg  292 (350)
                      .. ..+.....+....++.|-..+.+.+|+..+.+.+.....|...+.++++.+.+. .+.++.|.
T Consensus       116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~  180 (615)
T KOG2247|consen  116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDN  180 (615)
T ss_pred             CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHH
Confidence            11 111111223345567777888999999888777655555999999999998764 44445443

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=86.88  E-value=26  Score=32.56  Aligned_cols=268  Identities=11%  Similarity=0.056  Sum_probs=125.6

Q ss_pred             CccEEEEEeCCCCeeEeeCCCCcee--e-ecc-CccCCeEEEEECC-----CCcEEEEeeCCCeEEEeeCCCC--C----
Q 018784           30 DGFFLVSASKDSSPMLRNGETGDWI--G-TFE-GHKGAVWSCCLDA-----NALFSASGSADFTAKLWDALTG--D----   94 (350)
Q Consensus        30 dg~~lasgs~d~~v~iw~~~~~~~~--~-~l~-gH~~~V~~v~~~~-----~~~~l~s~s~Dg~v~vWd~~~~--~----   94 (350)
                      +...++.||..|.++||++......  . -|+ .-..+|..+....     +...||. =.-..+.|+.+...  .    
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g  114 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG  114 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence            4568999999999999998553311  1 112 1236676665431     2223332 45566666665211  1    


Q ss_pred             -e---eeeeecc--ccEeEEEEc----CC-CCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEE
Q 018784           95 -E---KHSFEHK--HIVRACAFS----ED-THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (350)
Q Consensus        95 -~---~~~~~h~--~~V~~~~~~----~~-~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s  163 (350)
                       .   ...+.|.  ..-..+..-    .. ..+++.=+-||.+.+|+-+...  .....+.---...+.|.+.... +++
T Consensus       115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~--f~~~lp~~llPgPl~Y~~~tDs-fvt  191 (418)
T PF14727_consen  115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA--FSRFLPDFLLPGPLCYCPRTDS-FVT  191 (418)
T ss_pred             cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE--EEEEcCCCCCCcCeEEeecCCE-EEE
Confidence             1   1112332  112222221    12 3677888999999999865321  1111111111223445544443 344


Q ss_pred             EeCCCeEEEEECCC--------------------Cc---eeEeecCCCCeEEEEEec---C-CcEEEEEcCCcEEEEECC
Q 018784          164 CTDSGGVRLWDARS--------------------GK---IVQTLETKSPVTSAEVSR---D-GRYITTADGSSVKFWDAN  216 (350)
Q Consensus       164 ~~~dg~i~iwd~~~--------------------~~---~~~~~~~~~~v~~~~~~~---~-~~~l~~~~~~~i~vwd~~  216 (350)
                      ++.+.++..|....                    ++   +-.++....++..+....   . ..+++.+ .+++.+.+..
T Consensus       192 ~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~  270 (418)
T PF14727_consen  192 ASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDN  270 (418)
T ss_pred             ecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCC
Confidence            45556777775321                    00   111122223344444322   1 1233322 2344444332


Q ss_pred             CcceeeeeecCCCCceeEe-c------CCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCE--EEEEEcCCCCEEEE
Q 018784          217 HFGLVKGYNMPCNTESASL-E------PKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPV--HCVRFSPGGESYAS  287 (350)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~-~------~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v--~~l~~sp~~~~las  287 (350)
                       +.......+...+.+... .      +.....++.++.++.+.||.=.+  ++=..+....+|  .-..|..-...+++
T Consensus       271 -G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~WsA~l~~~PVal~v~~~~~~~G~IV~  347 (418)
T PF14727_consen  271 -GSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVWSAQLPHVPVALSVANFNGLKGLIVS  347 (418)
T ss_pred             -CeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEEecCCCCCCEEEEecccCCCCceEEE
Confidence             222222222222222211 1      11123589999999999985321  111111122232  22223334567889


Q ss_pred             ecCCCcEEEecCCCCCcc
Q 018784          288 GSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       288 gs~Dg~v~vw~~~~~~~~  305 (350)
                      =+.+|.+.+--+.+....
T Consensus       348 Ls~~G~L~v~YLGTdPs~  365 (418)
T PF14727_consen  348 LSDEGQLSVSYLGTDPSL  365 (418)
T ss_pred             EcCCCcEEEEEeCCCCcc
Confidence            999999999877554433

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=86.62  E-value=22  Score=31.33  Aligned_cols=197  Identities=13%  Similarity=0.166  Sum_probs=106.6

Q ss_pred             eeEEEecccCCCccEEEEEeCCCCeeEeeCC------CC-ceeeeccC-----ccCCeEEEEECCCC------------c
Q 018784           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGE------TG-DWIGTFEG-----HKGAVWSCCLDANA------------L   74 (350)
Q Consensus        19 v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~------~~-~~~~~l~g-----H~~~V~~v~~~~~~------------~   74 (350)
                      -+.|+|+|   .+.+-++...-++..+||..      .. .++-++.+     -....+.+.|+...            .
T Consensus        25 ~WGia~~p---~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a  101 (336)
T TIGR03118        25 AWGLSYRP---GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS  101 (336)
T ss_pred             cceeEecC---CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence            46888887   55577777777889999986      12 22334332     11233444444222            2


Q ss_pred             EEEEeeCCCeEEEeeCCCCCe-----eeeeec--cccE-eEEEEcC--CCCeEEEe-eCCCeEEEEECCCCCCCCeeecC
Q 018784           75 FSASGSADFTAKLWDALTGDE-----KHSFEH--KHIV-RACAFSE--DTHLLLTG-GFEKILRIFDLNRPDAPPREVGN  143 (350)
Q Consensus        75 ~l~s~s~Dg~v~vWd~~~~~~-----~~~~~h--~~~V-~~~~~~~--~~~~l~sg-~~d~~v~vwd~~~~~~~~~~~~~  143 (350)
                      .++-++.||+|--|...-...     ...+..  ...| ..+++..  .+.+|+.+ -..++|.|||-.= ... ...+.
T Consensus       102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f-~~~-~~~g~  179 (336)
T TIGR03118       102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF-RPP-PLPGS  179 (336)
T ss_pred             eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc-ccc-cCCCC
Confidence            356678999999998543322     122222  2334 4566653  35667655 4579999998531 100 00000


Q ss_pred             C----------CCcE------EEEEEeC--CCCcEEEEEeCCCeEEEEECCCCceeEeecCCCC---eEEEEEec-----
Q 018784          144 S----------SGSI------RTVAWLH--SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP---VTSAEVSR-----  197 (350)
Q Consensus       144 ~----------~~~v------~~~~~~~--~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~---v~~~~~~~-----  197 (350)
                      .          .--|      .-+.|..  .+.+--+.+..-|.|-++|+. |+.++.+.....   -..++..|     
T Consensus       180 F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~  258 (336)
T TIGR03118       180 FIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGS  258 (336)
T ss_pred             ccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCC
Confidence            0          0001      1122221  122222334445789999964 777777754332   23455544     


Q ss_pred             -CCcEEEEE-cCCcEEEEECCCccee
Q 018784          198 -DGRYITTA-DGSSVKFWDANHFGLV  221 (350)
Q Consensus       198 -~~~~l~~~-~~~~i~vwd~~~~~~~  221 (350)
                       .+.+|+.- .|++|..||..+++.+
T Consensus       259 ~sg~lLVGNFGDG~InaFD~~sG~~~  284 (336)
T TIGR03118       259 LSGALLVGNFGDGTINAYDPQSGAQL  284 (336)
T ss_pred             CCCCeEEeecCCceeEEecCCCCcee
Confidence             45677664 4789999998776544

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=86.28  E-value=20  Score=35.61  Aligned_cols=112  Identities=11%  Similarity=0.014  Sum_probs=73.0

Q ss_pred             eEEEEEC--CCCcEEEEeeCCCeEEEeeCCC-------C-------------CeeeeeeccccEeEEEEc--CCCCeEEE
Q 018784           64 VWSCCLD--ANALFSASGSADFTAKLWDALT-------G-------------DEKHSFEHKHIVRACAFS--EDTHLLLT  119 (350)
Q Consensus        64 V~~v~~~--~~~~~l~s~s~Dg~v~vWd~~~-------~-------------~~~~~~~h~~~V~~~~~~--~~~~~l~s  119 (350)
                      |+.+.+.  .....|+.+..||.|.+|...+       .             ++...+.....+++++++  ...++||+
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV  182 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV  182 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence            4444433  3456788899999999996421       1             012233445678999999  88889999


Q ss_pred             eeCCCeEEEEECCCC--CCCCeeecCCCCcEEEEEEeCCC----C-cEEEEEeCCCeEEEEEC
Q 018784          120 GGFEKILRIFDLNRP--DAPPREVGNSSGSIRTVAWLHSD----Q-TILSSCTDSGGVRLWDA  175 (350)
Q Consensus       120 g~~d~~v~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~----~-~~~~s~~~dg~i~iwd~  175 (350)
                      ++....|.||-....  .........+...|-++.|.+.+    + ..+++++-.|.+.+|++
T Consensus       183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            988888998865432  11111112344567888888654    2 26677778898888877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PRK10115 protease 2; Provisional

Probab=86.14  E-value=39  Score=33.84  Aligned_cols=230  Identities=13%  Similarity=0.079  Sum_probs=106.1

Q ss_pred             cCCCccEEEEEeC-CC----CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCC------CeEEEeeCCCCC-
Q 018784           27 ITPDGFFLVSASK-DS----SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD------FTAKLWDALTGD-   94 (350)
Q Consensus        27 ~s~dg~~lasgs~-d~----~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D------g~v~vWd~~~~~-   94 (350)
                      ++|||++||-+.. +|    ++++.|+.+|+.+...-....  ..++|.+|+..|+-...+      ..|..|++.++. 
T Consensus       134 ~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~  211 (686)
T PRK10115        134 ITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPAS  211 (686)
T ss_pred             ECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChh
Confidence            4579987765532 23    377888888864322211222  458999888654433222      467778888773 


Q ss_pred             -eeeeeec-cccEe-EEEEcCCCCeEEEee---CCCeEEEEECCCCCCC-CeeecCCCCcEEEEEEeCCCCcEEEEEeC-
Q 018784           95 -EKHSFEH-KHIVR-ACAFSEDTHLLLTGG---FEKILRIFDLNRPDAP-PREVGNSSGSIRTVAWLHSDQTILSSCTD-  166 (350)
Q Consensus        95 -~~~~~~h-~~~V~-~~~~~~~~~~l~sg~---~d~~v~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~s~~~-  166 (350)
                       ....+.. .+... ....+.++++++..+   .++.+.+++....... ........+....+.  +.+..+++.... 
T Consensus       212 ~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ly~~tn~~  289 (686)
T PRK10115        212 QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD--HYQHRFYLRSNRH  289 (686)
T ss_pred             HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE--eCCCEEEEEEcCC
Confidence             3333332 22222 333454777665433   3456888885432211 122222223333332  223333333222 


Q ss_pred             --CCeEEEEECCC-CceeEeecC--CCCeEEEEEecCCcEEEEEcCC--cEEEEECCCcceeeeeecCCCCce--eEec-
Q 018784          167 --SGGVRLWDARS-GKIVQTLET--KSPVTSAEVSRDGRYITTADGS--SVKFWDANHFGLVKGYNMPCNTES--ASLE-  236 (350)
Q Consensus       167 --dg~i~iwd~~~-~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~--~i~vwd~~~~~~~~~~~~~~~~~~--~~~~-  236 (350)
                        ...|...++.. ++....+..  ...+..+.+..+.-++....++  .+.++|..+. .+..+.++.....  .... 
T Consensus       290 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~  368 (686)
T PRK10115        290 GKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAYVTWIAYNP  368 (686)
T ss_pred             CCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCceEeeecccC
Confidence              12344445442 221122222  2356777777442223333444  3566665432 2333332111111  1122 


Q ss_pred             -CCCCcEEEEecC---CCeEEEEEcccCe
Q 018784          237 -PKLGNIFIAGGE---DMWVHVFDFHTGE  261 (350)
Q Consensus       237 -~~~~~~l~sg~~---d~~i~v~d~~~~~  261 (350)
                       +..+.++++-++   -..+..+|+.+++
T Consensus       369 ~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        369 EPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             CCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence             222344444333   4578888887654

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=86.10  E-value=23  Score=31.04  Aligned_cols=91  Identities=16%  Similarity=0.137  Sum_probs=60.0

Q ss_pred             CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEee------CCCeEEEeeCCCCCeeeeee-----ccccEeEEEE
Q 018784           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS------ADFTAKLWDALTGDEKHSFE-----HKHIVRACAF  110 (350)
Q Consensus        42 ~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s------~Dg~v~vWd~~~~~~~~~~~-----h~~~V~~~~~  110 (350)
                      .+.+||..+.+|..--.+=++.|..+.|..+.++++.|.      ....+..||..+..-...-.     -+++|..+.+
T Consensus        17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~   96 (281)
T PF12768_consen   17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTF   96 (281)
T ss_pred             EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEe
Confidence            388999999999876667778899999987778887774      56778889987654211111     2366777776


Q ss_pred             cC-CCC-eEEEee---CCCeEEEEECC
Q 018784          111 SE-DTH-LLLTGG---FEKILRIFDLN  132 (350)
Q Consensus       111 ~~-~~~-~l~sg~---~d~~v~vwd~~  132 (350)
                      .. ++. +.+.|.   .+..|..||-.
T Consensus        97 ~~~d~~~~~~aG~~~~g~~~l~~~dGs  123 (281)
T PF12768_consen   97 ISNDGSNFWVAGRSANGSTFLMKYDGS  123 (281)
T ss_pred             eccCCceEEEeceecCCCceEEEEcCC
Confidence            43 333 333332   23457777643

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=86.06  E-value=26  Score=31.60  Aligned_cols=11  Identities=18%  Similarity=0.169  Sum_probs=7.7

Q ss_pred             CeEEEEECCCC
Q 018784          124 KILRIFDLNRP  134 (350)
Q Consensus       124 ~~v~vwd~~~~  134 (350)
                      ..+.+||..+.
T Consensus       168 ~~v~~YDp~t~  178 (346)
T TIGR03547       168 KNVLSYDPSTN  178 (346)
T ss_pred             ceEEEEECCCC
Confidence            46788887653

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=85.64  E-value=24  Score=30.89  Aligned_cols=142  Identities=15%  Similarity=0.162  Sum_probs=83.6

Q ss_pred             CCcEEEEeeCCCeEEEeeCCCCCeeee---eeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee--ecCCCC
Q 018784           72 NALFSASGSADFTAKLWDALTGDEKHS---FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE--VGNSSG  146 (350)
Q Consensus        72 ~~~~l~s~s~Dg~v~vWd~~~~~~~~~---~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~--~~~~~~  146 (350)
                      .+++..-+..+.-++|.|+.+......   ++-.+.-+++..  .|++...+..|..+.+.|+.+++.+...  .....+
T Consensus        95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~  172 (370)
T COG5276          95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGG  172 (370)
T ss_pred             cccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCC
Confidence            345555667788899999877654333   233343444444  5888888888888899999877655321  111222


Q ss_pred             cEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCc---eeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcc
Q 018784          147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK---IVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFG  219 (350)
Q Consensus       147 ~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~  219 (350)
                      ....++.+   +.....+..|+-+.+-|+....   .+........+.++..+++--+++..+. .+.+-|..+..
T Consensus       173 d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e-gvlivd~s~~s  244 (370)
T COG5276         173 DTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE-GVLIVDVSGPS  244 (370)
T ss_pred             CceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc-ceEEEecCCCC
Confidence            22344433   3344455577889999986653   3333333446777777777666654433 34555554443

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=84.73  E-value=28  Score=30.98  Aligned_cols=103  Identities=14%  Similarity=0.071  Sum_probs=47.9

Q ss_pred             CccEEEEEeCCC-----CeeEeeCCCCcee---eec---cCccCCeEEEEECCCCcEEEEeeCC-----CeEEEeeCCCC
Q 018784           30 DGFFLVSASKDS-----SPMLRNGETGDWI---GTF---EGHKGAVWSCCLDANALFSASGSAD-----FTAKLWDALTG   93 (350)
Q Consensus        30 dg~~lasgs~d~-----~v~iw~~~~~~~~---~~l---~gH~~~V~~v~~~~~~~~l~s~s~D-----g~v~vWd~~~~   93 (350)
                      ++.+.+.|+.++     .+..+|..+.++.   ..+   ...... .+++. .++.+.+.||..     ..+..+|+.+.
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~-~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~  149 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFEN-GSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQ  149 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccC-ceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence            355666676543     3455666655541   122   111111 12222 245555666542     35777787665


Q ss_pred             Ceee--eeeccccEeEEEEcCCCCeEEEeeCCCe----EEEEECCCC
Q 018784           94 DEKH--SFEHKHIVRACAFSEDTHLLLTGGFEKI----LRIFDLNRP  134 (350)
Q Consensus        94 ~~~~--~~~h~~~V~~~~~~~~~~~l~sg~~d~~----v~vwd~~~~  134 (350)
                      +-..  .+.............++++.+.|+.++.    +.+||+.+.
T Consensus       150 ~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~  196 (323)
T TIGR03548       150 EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN  196 (323)
T ss_pred             CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence            4211  1111111122222345667777776543    457787653

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=84.32  E-value=35  Score=31.62  Aligned_cols=138  Identities=11%  Similarity=0.035  Sum_probs=71.6

Q ss_pred             CCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC-----eeeeeecc-
Q 018784           29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-----EKHSFEHK-  102 (350)
Q Consensus        29 ~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~-----~~~~~~h~-  102 (350)
                      +||.+++.|..-.-.+-|+.-...+...-..-...+.++.+.+++.+++.+ .+|.+. |....++     ........ 
T Consensus       248 ~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~  325 (398)
T PLN00033        248 PDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKS  325 (398)
T ss_pred             CCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCC
Confidence            477777766553333334422111222222224567888888888887655 555543 3333332     12222222 


Q ss_pred             --ccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee---cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEE
Q 018784          103 --HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV---GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW  173 (350)
Q Consensus       103 --~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iw  173 (350)
                        ..+..+.|.++++.+++ +..|.+....- .++ .....   ..-....+.+.|.+++. .+++ +++|.|.-|
T Consensus       326 ~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~D-~G~-tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~-G~~G~il~~  396 (398)
T PLN00033        326 RGFGILDVGYRSKKEAWAA-GGSGILLRSTD-GGK-SWKRDKGADNIAANLYSVKFFDDKK-GFVL-GNDGVLLRY  396 (398)
T ss_pred             CCcceEEEEEcCCCcEEEE-ECCCcEEEeCC-CCc-ceeEccccCCCCcceeEEEEcCCCc-eEEE-eCCcEEEEe
Confidence              34888999988776554 55666655432 221 11111   12235677888765443 4444 456776554

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=84.07  E-value=5.9  Score=22.79  Aligned_cols=29  Identities=17%  Similarity=0.178  Sum_probs=21.8

Q ss_pred             CcEEEEecCCCeEEEEEcccCeeEEeecC
Q 018784          240 GNIFIAGGEDMWVHVFDFHTGEQIGCNKG  268 (350)
Q Consensus       240 ~~~l~sg~~d~~i~v~d~~~~~~~~~~~~  268 (350)
                      ..++++...++.|.++|..+++.+..+..
T Consensus         4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         4 TKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            34666677788999999988887766553

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=84.05  E-value=20  Score=30.55  Aligned_cols=137  Identities=21%  Similarity=0.206  Sum_probs=67.9

Q ss_pred             EEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeC---CCeEEEEECCCC--CCCCeeec---CCCCcEEEEEEeCC
Q 018784           86 KLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGF---EKILRIFDLNRP--DAPPREVG---NSSGSIRTVAWLHS  156 (350)
Q Consensus        86 ~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~---d~~v~vwd~~~~--~~~~~~~~---~~~~~v~~~~~~~~  156 (350)
                      .+||+.+++.+... ...-...+=.+-++|++|.+|+.   ...+++++....  ........   ....+=-+..-.+ 
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~-  127 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP-  127 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC-
Confidence            56888877643321 12222333457789999999875   245888876431  11111110   0111111122233 


Q ss_pred             CCcEEEEEe-CCCeEEEEECCCC--ceeE--eecC------CCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeee
Q 018784          157 DQTILSSCT-DSGGVRLWDARSG--KIVQ--TLET------KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY  224 (350)
Q Consensus       157 ~~~~~~s~~-~dg~i~iwd~~~~--~~~~--~~~~------~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~  224 (350)
                      ++++++.|+ ...+..+|..+..  ....  .+..      ..---.+...|+|+++..+..+. .+||..+...++.+
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s-~i~d~~~n~v~~~l  205 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS-IIYDYKTNTVVRTL  205 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc-EEEeCCCCeEEeeC
Confidence            445554444 4446677765321  1111  1111      01112355679999988776543 56687776554443

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=83.96  E-value=29  Score=30.54  Aligned_cols=213  Identities=13%  Similarity=0.126  Sum_probs=115.9

Q ss_pred             EEEEECCCCcEEEEeeCCCeEEEeeCC------CCCe-eeeee------ccccEeEEEEcCCCCe------------EEE
Q 018784           65 WSCCLDANALFSASGSADFTAKLWDAL------TGDE-KHSFE------HKHIVRACAFSEDTHL------------LLT  119 (350)
Q Consensus        65 ~~v~~~~~~~~l~s~s~Dg~v~vWd~~------~~~~-~~~~~------h~~~V~~~~~~~~~~~------------l~s  119 (350)
                      |.++++|.+.+-++...-+...++|..      ..+. +.++.      ....++.+.|+....+            ++-
T Consensus        26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif  105 (336)
T TIGR03118        26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF  105 (336)
T ss_pred             ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence            788999999998988888999999975      1221 22222      1235677777644333            566


Q ss_pred             eeCCCeEEEEECCCCCC---CC-eeec-CCCCcEEE-EEEe--CCCCcEEEEEeCCCeEEEEECCCCceeEe--ecC---
Q 018784          120 GGFEKILRIFDLNRPDA---PP-REVG-NSSGSIRT-VAWL--HSDQTILSSCTDSGGVRLWDARSGKIVQT--LET---  186 (350)
Q Consensus       120 g~~d~~v~vwd~~~~~~---~~-~~~~-~~~~~v~~-~~~~--~~~~~~~~s~~~dg~i~iwd~~~~~~~~~--~~~---  186 (350)
                      ++.||+|.-|...-...   .. .... ...+.++. ++..  .....+.++--..++|.++|-.=.+....  +..   
T Consensus       106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~i  185 (336)
T TIGR03118       106 VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPAL  185 (336)
T ss_pred             EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCC
Confidence            78899999998532111   11 1111 11233433 2222  22445566666678899888432221100  000   


Q ss_pred             ---CCCeEEEEEecCCcEEEE--------------EcCCcEEEEECCCcceeeeeecCC---CCceeEe-----cCCCCc
Q 018784          187 ---KSPVTSAEVSRDGRYITT--------------ADGSSVKFWDANHFGLVKGYNMPC---NTESASL-----EPKLGN  241 (350)
Q Consensus       187 ---~~~v~~~~~~~~~~~l~~--------------~~~~~i~vwd~~~~~~~~~~~~~~---~~~~~~~-----~~~~~~  241 (350)
                         ..+.. +.-. .++++++              ..-+.|.+||+.. ..++.+....   .+.-+..     -...+.
T Consensus       186 PagyAPFn-Iqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG~~sg~  262 (336)
T TIGR03118       186 PAGYAPFN-VQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFGSLSGA  262 (336)
T ss_pred             CCCCCCcc-eEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence               01111 1000 1222222              1225789998753 4444443221   1222222     223466


Q ss_pred             EEEEecCCCeEEEEEcccCeeEEeecCCC------cCEEEEEEcC
Q 018784          242 IFIAGGEDMWVHVFDFHTGEQIGCNKGHH------GPVHCVRFSP  280 (350)
Q Consensus       242 ~l~sg~~d~~i~v~d~~~~~~~~~~~~h~------~~v~~l~~sp  280 (350)
                      +|+--=-||+|..||..+|+.+..+....      .-.|.|.|..
T Consensus       263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       263 LLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             eEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            77766679999999999998877765432      2468888875

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PRK13684 Ycf48-like protein; Provisional

Probab=83.83  E-value=33  Score=30.93  Aligned_cols=148  Identities=10%  Similarity=0.065  Sum_probs=80.7

Q ss_pred             cCCeEEEEECCCCcEEEEeeCCCeEE-EeeCCCCCeeeee--eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCC
Q 018784           61 KGAVWSCCLDANALFSASGSADFTAK-LWDALTGDEKHSF--EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP  137 (350)
Q Consensus        61 ~~~V~~v~~~~~~~~l~s~s~Dg~v~-vWd~~~~~~~~~~--~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~  137 (350)
                      ...+..+.+.+++.+++.+ ..|.+. .++-. ++.-..+  .-...++++.+.+++..++.+ ..|.+++=..+.+..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence            4567888888888776654 445443 23321 1211111  223568899999998876654 4566543222222111


Q ss_pred             CeeecC---CCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec----CCCCeEEEEEecCCcEEEEEcCCcE
Q 018784          138 PREVGN---SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE----TKSPVTSAEVSRDGRYITTADGSSV  210 (350)
Q Consensus       138 ~~~~~~---~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~i  210 (350)
                      .....+   ....+..+.+.++ +.+++. +.+|.+. .-...|+......    .......+.+..+++.++++..|.|
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~-~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i  325 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTP-GEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL  325 (334)
T ss_pred             ccccCCccccccceeeEEEcCC-CCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence            111111   1234667777654 445544 4556554 3444455443332    1235777778877888888888877


Q ss_pred             EEEE
Q 018784          211 KFWD  214 (350)
Q Consensus       211 ~vwd  214 (350)
                      --|+
T Consensus       326 l~~~  329 (334)
T PRK13684        326 LRYV  329 (334)
T ss_pred             EEec
Confidence            6665

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=83.54  E-value=22  Score=35.27  Aligned_cols=101  Identities=19%  Similarity=0.198  Sum_probs=63.4

Q ss_pred             CCcEEEEEeCCCeEEEEECCC-------C-------------ceeEeecCCCCeEEEEEe--cCCcEEEEEcCC-cEEEE
Q 018784          157 DQTILSSCTDSGGVRLWDARS-------G-------------KIVQTLETKSPVTSAEVS--RDGRYITTADGS-SVKFW  213 (350)
Q Consensus       157 ~~~~~~s~~~dg~i~iwd~~~-------~-------------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~~-~i~vw  213 (350)
                      +..+|+.|.+||.|.+|.+++       .             ++...+.....+..+++.  ...+++|+++++ .|.||
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            456788899999999996521       1             122333345678888988  777888887654 45555


Q ss_pred             --ECCCcc--eeeeeecCCCCceeEecCCC----Cc-EEEEecCCCeEEEEEc
Q 018784          214 --DANHFG--LVKGYNMPCNTESASLEPKL----GN-IFIAGGEDMWVHVFDF  257 (350)
Q Consensus       214 --d~~~~~--~~~~~~~~~~~~~~~~~~~~----~~-~l~sg~~d~~i~v~d~  257 (350)
                        .+...+  .........+...++|.+..    |. .+++++-.|.+-+|++
T Consensus       193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence              442211  11122334456666665433    22 7788888999888887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=83.47  E-value=17  Score=33.21  Aligned_cols=60  Identities=3%  Similarity=-0.095  Sum_probs=34.1

Q ss_pred             cCCeEEEEECCCCcEEEEeeCC-------------------CeEEEeeCCCCCeeeeee-ccccEeEEEEcCCCCeEEEe
Q 018784           61 KGAVWSCCLDANALFSASGSAD-------------------FTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTG  120 (350)
Q Consensus        61 ~~~V~~v~~~~~~~~l~s~s~D-------------------g~v~vWd~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~sg  120 (350)
                      ......+.+.+||.+.++-+..                   |.|.-++..+++. ..+. .-.....++|+|+|+++++-
T Consensus       123 ~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~td  201 (367)
T TIGR02604       123 HHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCD  201 (367)
T ss_pred             cccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEc
Confidence            3446788999998876654421                   3344444443332 2222 11234678888888877653


Q ss_pred             e
Q 018784          121 G  121 (350)
Q Consensus       121 ~  121 (350)
                      .
T Consensus       202 n  202 (367)
T TIGR02604       202 N  202 (367)
T ss_pred             c
Confidence            3

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=83.42  E-value=36  Score=31.15  Aligned_cols=12  Identities=25%  Similarity=0.567  Sum_probs=7.9

Q ss_pred             CCCCeEEEeeCC
Q 018784          112 EDTHLLLTGGFE  123 (350)
Q Consensus       112 ~~~~~l~sg~~d  123 (350)
                      .++++.+.|+.+
T Consensus       138 ~~~~IYv~GG~~  149 (376)
T PRK14131        138 HNGKAYITGGVN  149 (376)
T ss_pred             eCCEEEEECCCC
Confidence            467777777754

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.23  E-value=12  Score=35.28  Aligned_cols=94  Identities=18%  Similarity=0.217  Sum_probs=55.5

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH   97 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~   97 (350)
                      .|.-|..+   +.|..+|-++.+|.+.++=....-.-..++.-...|.|-.++-+.+++.+ +.                
T Consensus       105 eV~~vl~s---~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~fts-s~----------------  164 (741)
T KOG4460|consen  105 EVYQVLLS---PTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTS-ST----------------  164 (741)
T ss_pred             EEEEEEec---CCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeecc-CC----------------
Confidence            34444334   47888888888887766543333333345544444555445444333322 11                


Q ss_pred             eeeccccEeEEEEcCCC---CeEEEeeCCCeEEEEECCCCC
Q 018784           98 SFEHKHIVRACAFSEDT---HLLLTGGFEKILRIFDLNRPD  135 (350)
Q Consensus        98 ~~~h~~~V~~~~~~~~~---~~l~sg~~d~~v~vwd~~~~~  135 (350)
                          .=.+..++|||+.   ..|..-..|.++|+||+.+.+
T Consensus       165 ----~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  165 ----SLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             ----ceeeeeccccCCccCCceEEEEecCcEEEEEecCCcc
Confidence                1135677888864   567777889999999987644

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=82.65  E-value=7.8  Score=37.56  Aligned_cols=73  Identities=18%  Similarity=0.211  Sum_probs=42.3

Q ss_pred             CCCCeEEEeeCCCeEEEEECCCC---CCCCee--ec--------------------CCCCcEEEEEEeC---CCCcEEEE
Q 018784          112 EDTHLLLTGGFEKILRIFDLNRP---DAPPRE--VG--------------------NSSGSIRTVAWLH---SDQTILSS  163 (350)
Q Consensus       112 ~~~~~l~sg~~d~~v~vwd~~~~---~~~~~~--~~--------------------~~~~~v~~~~~~~---~~~~~~~s  163 (350)
                      ++...++.+..||.+........   ......  ..                    .........+...   .+..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            46777888889999888876541   110000  00                    0112233333332   25678888


Q ss_pred             EeCCCeEEEEECCCCceeEee
Q 018784          164 CTDSGGVRLWDARSGKIVQTL  184 (350)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~~~  184 (350)
                      -+.|+++|+||+.+++++.+.
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEe
Confidence            899999999999999986654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=82.64  E-value=35  Score=30.41  Aligned_cols=93  Identities=13%  Similarity=0.118  Sum_probs=42.4

Q ss_pred             CCcEEEEEeC-----CCeEEEEECCCCc--eeEeecCCCCeEEEEEecCCcEEE-EEcCC----cEEEEECCCcceeeee
Q 018784          157 DQTILSSCTD-----SGGVRLWDARSGK--IVQTLETKSPVTSAEVSRDGRYIT-TADGS----SVKFWDANHFGLVKGY  224 (350)
Q Consensus       157 ~~~~~~s~~~-----dg~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~----~i~vwd~~~~~~~~~~  224 (350)
                      ++.+++.|+.     ...+..||+.+.+  .+..+.........+...++++.+ ++.++    .+.+||+.+..-...-
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~  202 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVA  202 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECC
Confidence            4556555553     2368888887653  222121111122222334455544 33332    3567888765432211


Q ss_pred             ec-----CCCC-ceeEecCCCCcEEEEecCC
Q 018784          225 NM-----PCNT-ESASLEPKLGNIFIAGGED  249 (350)
Q Consensus       225 ~~-----~~~~-~~~~~~~~~~~~l~sg~~d  249 (350)
                      .+     +... ....+....+.+++.|+.+
T Consensus       203 ~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~  233 (323)
T TIGR03548       203 DPTTDSEPISLLGAASIKINESLLLCIGGFN  233 (323)
T ss_pred             CCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence            11     1000 1112222346889999876

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.38  E-value=55  Score=32.52  Aligned_cols=174  Identities=14%  Similarity=0.199  Sum_probs=83.1

Q ss_pred             CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEe--e---cCCCCeEEEEEec
Q 018784          123 EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQT--L---ETKSPVTSAEVSR  197 (350)
Q Consensus       123 d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~--~---~~~~~v~~~~~~~  197 (350)
                      -..|+||+... .. .....-.++.+..+.|+.....+++  ..+|+++++++-... +..  .   ...+.|..+.+..
T Consensus        63 ~~~I~If~~sG-~l-L~~~~w~~~~lI~mgWs~~eeLI~v--~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~  137 (829)
T KOG2280|consen   63 RPYIRIFNISG-QL-LGRILWKHGELIGMGWSDDEELICV--QKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFH  137 (829)
T ss_pred             ceeEEEEeccc-cc-hHHHHhcCCCeeeecccCCceEEEE--eccceEEEeecchhh-hcccccccccccCceeEEEEec
Confidence            34588888753 22 2222223347889999865554433  588999999975322 111  1   1123466666666


Q ss_pred             CCcEEEEEcCCcEEEEECCCcceeeeeecCCC---CceeEecCCC-C-cEEE-EecCCCeEEEEEcccCee-EEeecCCC
Q 018784          198 DGRYITTADGSSVKFWDANHFGLVKGYNMPCN---TESASLEPKL-G-NIFI-AGGEDMWVHVFDFHTGEQ-IGCNKGHH  270 (350)
Q Consensus       198 ~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~-~-~~l~-sg~~d~~i~v~d~~~~~~-~~~~~~h~  270 (350)
                      +|-.+.+.++..+.+-+.......+-...|.+   ..+.....+. . ..++ ..-..+ .+++...++.. ...+.-..
T Consensus       138 ~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~  216 (829)
T KOG2280|consen  138 NGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPN  216 (829)
T ss_pred             CceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCC
Confidence            77666555554444444332211111111111   1122222211 1 1111 110000 11222222111 11111112


Q ss_pred             cCEEEEEEcCCCCEEEEecCCCcEEEecCCCC
Q 018784          271 GPVHCVRFSPGGESYASGSEDGTIRIWQTNPP  302 (350)
Q Consensus       271 ~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~  302 (350)
                      +.+..+..||+.++||-=...|.|.+-..+..
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~  248 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLS  248 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence            45777888898888888888888887766533

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.35  E-value=43  Score=31.25  Aligned_cols=117  Identities=12%  Similarity=0.135  Sum_probs=72.7

Q ss_pred             ccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeec-----cccEeEEEEcCCCCeEEEeeCCCeEEEEECCCC
Q 018784           60 HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH-----KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP  134 (350)
Q Consensus        60 H~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h-----~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~  134 (350)
                      -.++|.++.|++|.+.+|.--.|.+|.+.+....+.+..+.|     +..+....|+.+.. +|-.. +..+.+|.+...
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e-~A~i~-~~G~e~y~v~pe  142 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE-IAFIT-DQGIEFYQVLPE  142 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee-EEEEe-cCCeEEEEEchh
Confidence            457999999999999999999999999998743333333322     23467777776643 33322 344677766543


Q ss_pred             CCCCeeecCCCCcEEEEEEeCCCCcEEEEEe-CCCeEEEEECCCC
Q 018784          135 DAPPREVGNSSGSIRTVAWLHSDQTILSSCT-DSGGVRLWDARSG  178 (350)
Q Consensus       135 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-~dg~i~iwd~~~~  178 (350)
                      ....+....++..|.-..|.+.....+++.+ ..+++.=+-++++
T Consensus       143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            3334455666667777778776555544433 3344443444443

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=81.63  E-value=0.58  Score=46.34  Aligned_cols=59  Identities=17%  Similarity=0.263  Sum_probs=43.0

Q ss_pred             cEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEE-----------EcCCCCEEEEecCCCcEEEecCC
Q 018784          241 NIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVR-----------FSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       241 ~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~-----------~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      -++..+-.++.|++..+.+... ..+.+|..++..++           .||||+.+|..+.||.++.|...
T Consensus       196 ~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  196 VYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             ceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            4555666678888877654332 33456877766654           58999999999999999999864

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.54  E-value=22  Score=37.35  Aligned_cols=137  Identities=15%  Similarity=0.226  Sum_probs=83.8

Q ss_pred             EeCCCCeeEeeCCCCceeeeccCccCCeEEEEE-CCCC-------cEEEEeeCCCeEEEeeCCCCC---ee------eee
Q 018784           37 ASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCL-DANA-------LFSASGSADFTAKLWDALTGD---EK------HSF   99 (350)
Q Consensus        37 gs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~-~~~~-------~~l~s~s~Dg~v~vWd~~~~~---~~------~~~   99 (350)
                      .+.|+.+.||+.+++.-...+.+-+..|..|.+ .|..       +++..-.+--.|.++-+.-.+   ..      ..+
T Consensus        95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i  174 (1311)
T KOG1900|consen   95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI  174 (1311)
T ss_pred             EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence            467899999999997777888888888877764 3322       232223344455555432111   01      111


Q ss_pred             e-ccccEeEEEEcCCCCeEEEeeCCCeEEEEEC----CCC---C-C----------------CCeeecCCCCcEEEEEEe
Q 018784          100 E-HKHIVRACAFSEDTHLLLTGGFEKILRIFDL----NRP---D-A----------------PPREVGNSSGSIRTVAWL  154 (350)
Q Consensus       100 ~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~----~~~---~-~----------------~~~~~~~~~~~v~~~~~~  154 (350)
                      . ..-.|.++....+|+.+.+|-.|   .+|.+    ..+   . +                .....+.+...|..+...
T Consensus       175 ~~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID  251 (1311)
T KOG1900|consen  175 SVDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID  251 (1311)
T ss_pred             ecCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence            1 24468999989999988876655   45543    110   0 0                001112445677777753


Q ss_pred             CCCCcEEEEEeCCCeEEEEECCC
Q 018784          155 HSDQTILSSCTDSGGVRLWDARS  177 (350)
Q Consensus       155 ~~~~~~~~s~~~dg~i~iwd~~~  177 (350)
                       +...++.+-++.++|.+||+..
T Consensus       252 -~SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  252 -NSRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             -cccceeeeeccCceEEEEEccC
Confidence             4556777788889999999976

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=81.05  E-value=34  Score=29.21  Aligned_cols=138  Identities=12%  Similarity=0.229  Sum_probs=71.2

Q ss_pred             eEeeCCCCceeeeccCccCCeEEE--EECCCCcEEEEeeCC---CeEEEeeCCCCC--eee-----eeeccccEeEEEEc
Q 018784           44 MLRNGETGDWIGTFEGHKGAVWSC--CLDANALFSASGSAD---FTAKLWDALTGD--EKH-----SFEHKHIVRACAFS  111 (350)
Q Consensus        44 ~iw~~~~~~~~~~l~gH~~~V~~v--~~~~~~~~l~s~s~D---g~v~vWd~~~~~--~~~-----~~~h~~~V~~~~~~  111 (350)
                      .+||+.+.+.. .+.-.+ .+.|.  .+-++|+++.+||.-   ..+|+++.....  +..     .+.....-.+...-
T Consensus        49 ~~yD~~tn~~r-pl~v~t-d~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L  126 (243)
T PF07250_consen   49 VEYDPNTNTFR-PLTVQT-DTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL  126 (243)
T ss_pred             EEEecCCCcEE-eccCCC-CCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence            46888777653 232211 12222  355899999887652   458888865411  111     12222333344556


Q ss_pred             CCCCeEEEeeCCC-eEEEEECCCCCCCCee---ec----CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEe
Q 018784          112 EDTHLLLTGGFEK-ILRIFDLNRPDAPPRE---VG----NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQT  183 (350)
Q Consensus       112 ~~~~~l~sg~~d~-~v~vwd~~~~~~~~~~---~~----~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~  183 (350)
                      |||+.|+.||.+. +...|.-.........   ..    ......+-..|.-+++++++.+..+  -.|||..+.+.+..
T Consensus       127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~  204 (243)
T PF07250_consen  127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRT  204 (243)
T ss_pred             CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEee
Confidence            8999998888763 3455543211110100   00    1112233344555677777776653  45568777766555


Q ss_pred             ec
Q 018784          184 LE  185 (350)
Q Consensus       184 ~~  185 (350)
                      +.
T Consensus       205 lP  206 (243)
T PF07250_consen  205 LP  206 (243)
T ss_pred             CC
Confidence            43

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=80.83  E-value=45  Score=30.52  Aligned_cols=225  Identities=15%  Similarity=0.094  Sum_probs=96.9

Q ss_pred             CccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEE--ECCCCcEEEEee---CC-------------------CeE
Q 018784           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC--LDANALFSASGS---AD-------------------FTA   85 (350)
Q Consensus        30 dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~--~~~~~~~l~s~s---~D-------------------g~v   85 (350)
                      +++.+.--.....++--|+.+.+....++-...-+-...  .+.++..++..-   .|                   ..|
T Consensus        91 ~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i  170 (386)
T PF14583_consen   91 DDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRI  170 (386)
T ss_dssp             TSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEE
T ss_pred             CCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceE
Confidence            444544344445666667777765444444444332222  244566554321   11                   122


Q ss_pred             EEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEe----eCCCe-EEEEECCCCCCCCeeec-CCCCcEEEE-EEeCCCC
Q 018784           86 KLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG----GFEKI-LRIFDLNRPDAPPREVG-NSSGSIRTV-AWLHSDQ  158 (350)
Q Consensus        86 ~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg----~~d~~-v~vwd~~~~~~~~~~~~-~~~~~v~~~-~~~~~~~  158 (350)
                      .--|+.+++....+.-+..+..+.|+|....+++=    -.+.. -|||-+.........+. .....+..= -|.+++.
T Consensus       171 ~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~  250 (386)
T PF14583_consen  171 FTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGS  250 (386)
T ss_dssp             EEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS
T ss_pred             EEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCC
Confidence            23345555555555556667888999977666654    34443 47775543222122111 112222222 3445555


Q ss_pred             cEEEEE----eCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEc-CC----------------cEEEEECCC
Q 018784          159 TILSSC----TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-GS----------------SVKFWDANH  217 (350)
Q Consensus       159 ~~~~s~----~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~----------------~i~vwd~~~  217 (350)
                      .+..-+    +.+..|.-.|+.+++.......+ .......++||+++++.. |.                -|.++++..
T Consensus       251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~  329 (386)
T PF14583_consen  251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEA  329 (386)
T ss_dssp             -EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEEEEETTT
T ss_pred             EEEEEeecCCCCceEEEeeCCCCCCceEEEeCC-ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecccc
Confidence            544422    23345777788887654433333 455666779999987632 11                355677765


Q ss_pred             cceeeeeec-------C----CCCceeEecCCCCcEEEEecCCCeEEEE
Q 018784          218 FGLVKGYNM-------P----CNTESASLEPKLGNIFIAGGEDMWVHVF  255 (350)
Q Consensus       218 ~~~~~~~~~-------~----~~~~~~~~~~~~~~~l~sg~~d~~i~v~  255 (350)
                      .........       .    ..-.-..|.|+...+|..+..+|...||
T Consensus       330 ~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY  378 (386)
T PF14583_consen  330 GRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY  378 (386)
T ss_dssp             TEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred             CceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence            443211110       0    0112345666544455555566665555

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.63  E-value=50  Score=30.86  Aligned_cols=100  Identities=14%  Similarity=0.214  Sum_probs=61.9

Q ss_pred             ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC---eeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCC
Q 018784          101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP---REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS  177 (350)
Q Consensus       101 h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~  177 (350)
                      .++.+.++.|++|.+.||+--.|.+|..++....+...   ...+.....|....|.+....-+++   +..+.+|.+..
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~---~~G~e~y~v~p  141 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFIT---DQGIEFYQVLP  141 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEe---cCCeEEEEEch
Confidence            56789999999999999999999999999873222211   1223334457788888764433332   23466665543


Q ss_pred             Cc-eeEeec-CCCCeEEEEEecCCcEEE
Q 018784          178 GK-IVQTLE-TKSPVTSAEVSRDGRYIT  203 (350)
Q Consensus       178 ~~-~~~~~~-~~~~v~~~~~~~~~~~l~  203 (350)
                      .+ .++..+ ....|+--.++++.+.+.
T Consensus       142 ekrslRlVks~~~nvnWy~yc~et~v~L  169 (657)
T KOG2377|consen  142 EKRSLRLVKSHNLNVNWYMYCPETAVIL  169 (657)
T ss_pred             hhhhhhhhhhcccCccEEEEccccceEe
Confidence            32 222222 234577777888876543

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=80.23  E-value=55  Score=31.15  Aligned_cols=154  Identities=20%  Similarity=0.190  Sum_probs=73.5

Q ss_pred             CccEEEEE---eCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccE-
Q 018784           30 DGFFLVSA---SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIV-  105 (350)
Q Consensus        30 dg~~lasg---s~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V-  105 (350)
                      +|-+++++   .......+.|. .|.....+..-......+..-++|.+++..+  ..++..|.. |+....+...+.. 
T Consensus       114 ~gl~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~  189 (477)
T PF05935_consen  114 DGLYFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYY  189 (477)
T ss_dssp             T-EEEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE
T ss_pred             CcEEEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCccc
Confidence            45566666   22333455553 4444443322111111144568888887655  788888874 4444444333221 


Q ss_pred             ---eEEEEcCCCCeEEEee--------------CC---------CeEEEEECCCCCCCCee-------------ecCCC-
Q 018784          106 ---RACAFSEDTHLLLTGG--------------FE---------KILRIFDLNRPDAPPRE-------------VGNSS-  145 (350)
Q Consensus       106 ---~~~~~~~~~~~l~sg~--------------~d---------~~v~vwd~~~~~~~~~~-------------~~~~~-  145 (350)
                         ..+..-|+|++|+.+.              .|         ..+..||+.+--.+...             ..... 
T Consensus       190 ~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~D  269 (477)
T PF05935_consen  190 DFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRD  269 (477)
T ss_dssp             -B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSB
T ss_pred             ccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCC
Confidence               3455678888877666              12         23456665321101110             00001 


Q ss_pred             -CcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC
Q 018784          146 -GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK  187 (350)
Q Consensus       146 -~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~  187 (350)
                       -++.++.+.+.++.+++|.=.-..|...|.++++....+..+
T Consensus       270 W~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~  312 (477)
T PF05935_consen  270 WLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP  312 (477)
T ss_dssp             S--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred             ccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence             247888888878888888765568999998899887777643

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=80.08  E-value=45  Score=30.01  Aligned_cols=12  Identities=17%  Similarity=0.299  Sum_probs=8.6

Q ss_pred             CeEEEEECCCCc
Q 018784          168 GGVRLWDARSGK  179 (350)
Q Consensus       168 g~i~iwd~~~~~  179 (350)
                      ..+.+||+.+.+
T Consensus       168 ~~v~~YDp~t~~  179 (346)
T TIGR03547       168 KNVLSYDPSTNQ  179 (346)
T ss_pred             ceEEEEECCCCc
Confidence            468888987653

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	350
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		7e-24
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		6e-08
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		8e-24
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		6e-08
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		9e-24
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		4e-06
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		7e-23
2gnq_A	336	Structure Of Wdr5 Length = 336		9e-21
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-08
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-05
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		9e-21
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-08
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-05
2h9l_A	329	Wdr5delta23 Length = 329		1e-20
2h9l_A	329	Wdr5delta23 Length = 329		2e-11
2h9l_A	329	Wdr5delta23 Length = 329		2e-05
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-20
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-11
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-05
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-20
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-11
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-05
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-20
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-11
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-05
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-20
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-11
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-05
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-20
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-11
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-05
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-20
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-11
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-05
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-20
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-11
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		1e-05
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-20
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-11
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-05
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-20
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-11
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-05
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-20
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-08
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		2e-20
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-20
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		7e-08
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-20
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-11
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-05
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-19
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-11
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-05
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-19
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-11
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		3e-15
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		6e-14
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		5e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		6e-13
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-06
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		7e-13
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		8e-13
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-06
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-12
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-12
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-12
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		3e-12
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		6e-12
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		1e-11
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		4e-11
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-10
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		3e-10
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		6e-10
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-05
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		9e-10
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-09
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-09
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-09
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-09
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-09
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		8e-09
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-04
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		3e-08
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		4e-08
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-07
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-07
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		5e-07
3odt_A	313	Crystal Structure Of Wd40 Beta Propeller Domain Of		6e-07
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		7e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-06
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		5e-06
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-06
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		5e-06
4a11_B	408	Structure Of The Hsddb1-Hscsa Complex Length = 408		1e-06
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-06
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		2e-06
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		9e-06
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		3e-06
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		3e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		3e-06
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		2e-05
4g56_B	357	Crystal Structure Of Full Length Prmt5/mep50 Comple		1e-04
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		2e-04
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		3e-04

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score =  107 bits (268), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 141/305 (46%), Gaps = 27/305 (8%)
Query: 17  RPVVD-LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF 75
           RP  D ++++  + DG  + S   D +  +   ETG+ +   + H+  V  C   ++  +
Sbjct: 612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 671
Query: 76  SASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFS-EDTHLLL-TGGFEKILRIFDLN 132
            A+ SAD   K+WD+ TG   H++ EH   V  C F+ +  HLLL TG  +  L+++DLN
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 133 RPDAPPREVG--NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK--- 187
           + +      G  NS    R       D  +L+SC+  G +RLWD RS    +++  K   
Sbjct: 732 QKECRNTMFGHTNSVNHCR----FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787
Query: 188 ----SPVTSAEV-------SRDGRYITTADGSSVKFWDANHFGLVKGYNM--PCNTESAS 234
                P    EV       S DG  I  A  + V  +D +  GL+   +       +   
Sbjct: 788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD 847
Query: 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTI 294
             P   ++ +       V +++  +  ++   +GH   VH V FSP G S+ + S+D TI
Sbjct: 848 FSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTI 906
Query: 295 RIWQT 299
           R+W+T
Sbjct: 907 RVWET 911

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 4/151 (2%)
Query: 161 LSSCTDSGGVRLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITTADG-SSVKFWDANHF 218
           ++SC     ++++ A +G K++     +  V     S D  YI T      VK WD+   
Sbjct: 630 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 689
Query: 219 GLVKGYNMPC-NTESASLEPKLGNIFIA-GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCV 276
            LV  Y+             K  ++ +A G  D ++ ++D +  E      GH   V+  
Sbjct: 690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749
Query: 277 RFSPGGESYASGSEDGTIRIWQTNPPNHEEN 307
           RFSP  E  AS S DGT+R+W     N  ++
Sbjct: 750 RFSPDDELLASCSADGTLRLWDVRSANERKS 780

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score =  107 bits (268), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 141/305 (46%), Gaps = 27/305 (8%)
Query: 17  RPVVD-LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF 75
           RP  D ++++  + DG  + S   D +  +   ETG+ +   + H+  V  C   ++  +
Sbjct: 619 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 678
Query: 76  SASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFS-EDTHLLL-TGGFEKILRIFDLN 132
            A+ SAD   K+WD+ TG   H++ EH   V  C F+ +  HLLL TG  +  L+++DLN
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 133 RPDAPPREVG--NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK--- 187
           + +      G  NS    R       D  +L+SC+  G +RLWD RS    +++  K   
Sbjct: 739 QKECRNTMFGHTNSVNHCR----FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 794
Query: 188 ----SPVTSAEV-------SRDGRYITTADGSSVKFWDANHFGLVKGYNM--PCNTESAS 234
                P    EV       S DG  I  A  + V  +D +  GL+   +       +   
Sbjct: 795 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD 854
Query: 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTI 294
             P   ++ +       V +++  +  ++   +GH   VH V FSP G S+ + S+D TI
Sbjct: 855 FSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTI 913
Query: 295 RIWQT 299
           R+W+T
Sbjct: 914 RVWET 918

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 4/151 (2%)
Query: 161 LSSCTDSGGVRLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITTADG-SSVKFWDANHF 218
           ++SC     ++++ A +G K++     +  V     S D  YI T      VK WD+   
Sbjct: 637 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 696
Query: 219 GLVKGYNMPC-NTESASLEPKLGNIFIA-GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCV 276
            LV  Y+             K  ++ +A G  D ++ ++D +  E      GH   V+  
Sbjct: 697 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 756
Query: 277 RFSPGGESYASGSEDGTIRIWQTNPPNHEEN 307
           RFSP  E  AS S DGT+R+W     N  ++
Sbjct: 757 RFSPDDELLASCSADGTLRLWDVRSANERKS 787

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  104 bits (260), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 141/298 (47%), Gaps = 30/298 (10%)
Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
           GHS  V  + +SP   DG  + SAS D +  L N   G  + T  GH  +VW      + 
Sbjct: 137 GHSSSVWGVAFSP---DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 192
Query: 74  LFSASGSADFTAKLWD-------ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKIL 126
              AS S D T KLW+        LTG       H   VR  AFS D   + +   +K +
Sbjct: 193 QTIASASDDKTVKLWNRNGQLLQTLTG-------HSSSVRGVAFSPDGQTIASASDDKTV 245
Query: 127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET 186
           +++  NR     + +   S S+  VA+    QTI +S +D   V+LW+ R+G+++QTL  
Sbjct: 246 KLW--NRNGQLLQTLTGHSSSVNGVAFRPDGQTI-ASASDDKTVKLWN-RNGQLLQTLTG 301
Query: 187 -KSPVTSAEVSRDGRYITTA-DGSSVKFWDAN--HFGLVKGYNMPCNTESASLEPKLGNI 242
             S V     S DG+ I +A D  +VK W+ N  H   + G++   +    +  P  G  
Sbjct: 302 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHS--SSVWGVAFSPD-GQT 358
Query: 243 FIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
             +  +D  V +++   G+ +    GH   V  V FSP G++ AS S+D T+++W  N
Sbjct: 359 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 415

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 97.4 bits (241), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 34  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 90
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 91  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 146
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 147 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 204
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 205 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 264
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
            A+     G   ++G ED  V++++  T E +   +GH   V      P     AS +  
Sbjct: 265 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 324
Query: 290 EDGTIRIWQTN 300
            D TI++W+++
Sbjct: 325 NDKTIKLWKSD 335

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 11/221 (4%)
Query: 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160
           H   V +  FS +   L +   +K+++I+            G+  G I  VAW  SD  +
Sbjct: 46  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAW-SSDSNL 103
Query: 161 LSSCTDSGGVRLWDARSGKIVQTLETKSP-VTSAEVSRDGRYITTAD-GSSVKFWDANHF 218
           L S +D   +++WD  SGK ++TL+  S  V     +     I +     SV+ WD    
Sbjct: 104 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 163
Query: 219 GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK----GHHGPVH 274
             +K      +  SA    + G++ ++   D    ++D  +G+   C K      + PV 
Sbjct: 164 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---CLKTLIDDDNPPVS 220
Query: 275 CVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQ 315
            V+FSP G+   + + D T+++W  +     + ++G  N +
Sbjct: 221 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 261

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
           V+S + S +G ++ ++     +K W   D      + G+ +  +  + S +    N+ ++
Sbjct: 50  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 106
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
             +D  + ++D  +G+ +   KGH   V C  F+P      SGS D ++RIW        
Sbjct: 107 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 158
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
                  + +TGK   +    +  +   H N++G
Sbjct: 159 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 185

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 97.4 bits (241), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 32  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 88
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 89  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 144
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 145 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 202
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 203 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 262
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
            A+     G   ++G ED  V++++  T E +   +GH   V      P     AS +  
Sbjct: 263 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 322
Query: 290 EDGTIRIWQTN 300
            D TI++W+++
Sbjct: 323 NDKTIKLWKSD 333

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 11/221 (4%)
Query: 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160
           H   V +  FS +   L +   +K+++I+            G+  G I  VAW  SD  +
Sbjct: 44  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAW-SSDSNL 101
Query: 161 LSSCTDSGGVRLWDARSGKIVQTLETKSP-VTSAEVSRDGRYITTAD-GSSVKFWDANHF 218
           L S +D   +++WD  SGK ++TL+  S  V     +     I +     SV+ WD    
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 161
Query: 219 GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK----GHHGPVH 274
             +K      +  SA    + G++ ++   D    ++D  +G+   C K      + PV 
Sbjct: 162 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---CLKTLIDDDNPPVS 218
Query: 275 CVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQ 315
            V+FSP G+   + + D T+++W  +     + ++G  N +
Sbjct: 219 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 259

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
           V+S + S +G ++ ++     +K W   D      + G+ +  +  + S +    N+ ++
Sbjct: 48  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 104
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
             +D  + ++D  +G+ +   KGH   V C  F+P      SGS D ++RIW        
Sbjct: 105 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 156
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
                  + +TGK   +    +  +   H N++G
Sbjct: 157 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 183

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 27  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 83
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 84  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 139
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 140 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 197
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 198 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 257
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
            A+     G   ++G ED  V++++  T E +   +GH   V      P     AS +  
Sbjct: 258 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 317
Query: 290 EDGTIRIWQTN 300
            D TI++W+++
Sbjct: 318 NDKTIKLWKSD 328

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDT 114
           T  GH  AV S     N  + AS SAD   K+W A  G  EK    HK  +   A+S D+
Sbjct: 35  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
           +LL++   +K L+I+D++         G+S+  +    +      I+S   D   VR+WD
Sbjct: 95  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDES-VRIWD 152
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
            ++GK ++TL   S PV++   +RDG  I ++    + + WD                  
Sbjct: 153 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT----------------- 195
Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
                       A G+ +   + D             + PV  V+FSP G+   + + D 
Sbjct: 196 ------------ASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLDN 231
Query: 293 TIRIWQTNPPNHEENHSGTGNAQ 315
           T+++W  +     + ++G  N +
Sbjct: 232 TLKLWDYSKGKCLKTYTGHKNEK 254

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
           V+S + S +G ++ ++     +K W   D      + G+ +  +  + S +    N+ ++
Sbjct: 43  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 99
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
             +D  + ++D  +G+ +   KGH   V C  F+P      SGS D ++RIW        
Sbjct: 100 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 151
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
                  + +TGK   +    +  +   H N++G
Sbjct: 152 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 178

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 11  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 67
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 68  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 123
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 124 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 181
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 182 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 241
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
            A+     G   ++G ED  V++++  T E +   +GH   V      P     AS +  
Sbjct: 242 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 301
Query: 290 EDGTIRIWQTN 300
            D TI++W+++
Sbjct: 302 NDKTIKLWKSD 312

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDT 114
           T  GH  AV S     N  + AS SAD   K+W A  G  EK    HK  +   A+S D+
Sbjct: 19  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
           +LL++   +K L+I+D++         G+S+  +    +      I+S   D   VR+WD
Sbjct: 79  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDES-VRIWD 136
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
            ++GK ++TL   S PV++   +RDG  I ++    + + WD                  
Sbjct: 137 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT----------------- 179
Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
                       A G+ +   + D             + PV  V+FSP G+   + + D 
Sbjct: 180 ------------ASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLDN 215
Query: 293 TIRIWQTNPPNHEENHSGTGNAQ 315
           T+++W  +     + ++G  N +
Sbjct: 216 TLKLWDYSKGKCLKTYTGHKNEK 238

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
           V+S + S +G ++ ++     +K W   D      + G+ +  +  + S +    N+ ++
Sbjct: 27  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 83
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
             +D  + ++D  +G+ +   KGH   V C  F+P      SGS D ++RIW        
Sbjct: 84  ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 135
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
                  + +TGK   +    +  +   H N++G
Sbjct: 136 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 162

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 10  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 66
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 67  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 123 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 180
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
            A+     G   ++G ED  V++++  T E +   +GH   V      P     AS +  
Sbjct: 241 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 300
Query: 290 EDGTIRIWQTN 300
            D TI++W+++
Sbjct: 301 NDKTIKLWKSD 311

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDT 114
           T  GH  AV S     N  + AS SAD   K+W A  G  EK    HK  +   A+S D+
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
           +LL++   +K L+I+D++         G+S+  +    +      I+S   D   VR+WD
Sbjct: 78  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDES-VRIWD 135
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
            ++GK ++TL   S PV++   +RDG  I ++    + + WD                  
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT----------------- 178
Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
                       A G+ +   + D             + PV  V+FSP G+   + + D 
Sbjct: 179 ------------ASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLDN 214
Query: 293 TIRIWQTNPPNHEENHSGTGNAQ 315
           T+++W  +     + ++G  N +
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEK 237

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
           V+S + S +G ++ ++     +K W   D      + G+ +  +  + S +    N+ ++
Sbjct: 26  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 82
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
             +D  + ++D  +G+ +   KGH   V C  F+P      SGS D ++RIW        
Sbjct: 83  ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 134
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
                  + +TGK   +    +  +   H N++G
Sbjct: 135 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 161

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 15  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 71
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 72  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 127
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 128 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 185
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 186 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 245
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
            A+     G   ++G ED  V++++  T E +   +GH   V      P     AS +  
Sbjct: 246 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 305
Query: 290 EDGTIRIWQTN 300
            D TI++W+++
Sbjct: 306 NDKTIKLWKSD 316

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDT 114
           T  GH  AV S     N  + AS SAD   K+W A  G  EK    HK  +   A+S D+
Sbjct: 23  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
           +LL++   +K L+I+D++         G+S+  +    +      I+S   D   VR+WD
Sbjct: 83  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDES-VRIWD 140
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
            ++GK ++TL   S PV++   +RDG  I ++    + + WD                  
Sbjct: 141 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT----------------- 183
Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
                       A G+ +   + D             + PV  V+FSP G+   + + D 
Sbjct: 184 ------------ASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLDN 219
Query: 293 TIRIWQTNPPNHEENHSGTGNAQ 315
           T+++W  +     + ++G  N +
Sbjct: 220 TLKLWDYSKGKCLKTYTGHKNEK 242

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
           V+S + S +G ++ ++     +K W   D      + G+ +  +  + S +    N+ ++
Sbjct: 31  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 87
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
             +D  + ++D  +G+ +   KGH   V C  F+P      SGS D ++RIW        
Sbjct: 88  ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 139
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
                  + +TGK   +    +  +   H N++G
Sbjct: 140 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 166

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 10  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 66
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 67  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 123 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 180
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
            A+     G   ++G ED  V++++  T E +   +GH   V      P     AS +  
Sbjct: 241 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 300
Query: 290 EDGTIRIWQTN 300
            D TI++W+++
Sbjct: 301 NDKTIKLWKSD 311

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDT 114
           T  GH  AV S     N  + AS SAD   K+W A  G  EK    HK  +   A+S D+
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
           +LL++   +K L+I+D++         G+S+  +    +      I+S   D   VR+WD
Sbjct: 78  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDES-VRIWD 135
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
            ++GK ++TL   S PV++   +RDG  I ++    + + WD                  
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT----------------- 178
Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
                       A G+ +   + D             + PV  V+FSP G+   + + D 
Sbjct: 179 ------------ASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLDN 214
Query: 293 TIRIWQTNPPNHEENHSGTGNAQ 315
           T+++W  +     + ++G  N +
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEK 237

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
           V+S + S +G ++ ++     +K W   D      + G+ +  +  + S +    N+ ++
Sbjct: 26  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 82
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
             +D  + ++D  +G+ +   KGH   V C  F+P      SGS D ++RIW        
Sbjct: 83  ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 134
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
                  + +TGK   +    +  +   H N++G
Sbjct: 135 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 161

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 16  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 72
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 73  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 129 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 186
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
            A+     G   ++G ED  V++++  T E +   +GH   V      P     AS +  
Sbjct: 247 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 290 EDGTIRIWQTN 300
            D TI++W+++
Sbjct: 307 NDKTIKLWKSD 317

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDT 114
           T  GH  AV S     N  + AS SAD   K+W A  G  EK    HK  +   A+S D+
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
           +LL++   +K L+I+D++         G+S+  +    +      I+S   D   VR+WD
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDES-VRIWD 141
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
            ++GK ++TL   S PV++   +RDG  I ++    + + WD                  
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT----------------- 184
Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
                       A G+ +   + D             + PV  V+FSP G+   + + D 
Sbjct: 185 ------------ASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLDN 220
Query: 293 TIRIWQTNPPNHEENHSGTGNAQ 315
           T+++W  +     + ++G  N +
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEK 243

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
           V+S + S +G ++ ++     +K W   D      + G+ +  +  + S +    N+ ++
Sbjct: 32  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 88
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
             +D  + ++D  +G+ +   KGH   V C  F+P      SGS D ++RIW        
Sbjct: 89  ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 140
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
                  + +TGK   +    +  +   H N++G
Sbjct: 141 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 167

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 9   KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 65
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 66  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 121
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 122 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 179
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 180 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 239
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
            A+     G   ++G ED  V++++  T E +   +GH   V      P     AS +  
Sbjct: 240 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 299
Query: 290 EDGTIRIWQTN 300
            D TI++W+++
Sbjct: 300 NDKTIKLWKSD 310

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDT 114
           T  GH  AV S     N  + AS SAD   K+W A  G  EK    HK  +   A+S D+
Sbjct: 17  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
           +LL++   +K L+I+D++         G+S+  +    +      I+S   D   VR+WD
Sbjct: 77  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDES-VRIWD 134
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
            ++GK ++TL   S PV++   +RDG  I ++    + + WD                  
Sbjct: 135 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT----------------- 177
Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
                       A G+ +   + D             + PV  V+FSP G+   + + D 
Sbjct: 178 ------------ASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLDN 213
Query: 293 TIRIWQTNPPNHEENHSGTGNAQ 315
           T+++W  +     + ++G  N +
Sbjct: 214 TLKLWDYSKGKCLKTYTGHKNEK 236

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
           V+S + S +G ++ ++     +K W   D      + G+ +  +  + S +    N+ ++
Sbjct: 25  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 81
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
             +D  + ++D  +G+ +   KGH   V C  F+P      SGS D ++RIW        
Sbjct: 82  ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 133
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
                  + +TGK   +    +  +   H N++G
Sbjct: 134 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 160

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 16  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 72
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 73  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 129 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 186
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
            A+     G   ++G ED  V++++  T E +   +GH   V      P     AS +  
Sbjct: 247 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 290 EDGTIRIWQTN 300
            D TI++W+++
Sbjct: 307 NDKTIKLWKSD 317

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDT 114
           T  GH  AV S     N  + AS SAD   K+W A  G  EK    HK  +   A+S D+
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
           +LL++   +K L+I+D++         G+S+  +    +      I+S   D   VR+WD
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDES-VRIWD 141
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
            ++GK ++TL   S PV++   +RDG  I ++    + + WD                  
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT----------------- 184
Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
                       A G+ +   + D             + PV  V+FSP G+   + + D 
Sbjct: 185 ------------ASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLDN 220
Query: 293 TIRIWQTNPPNHEENHSGTGNAQ 315
           T+++W  +     + ++G  N +
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEK 243

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
           V+S + S +G ++ ++     +K W   D      + G+ +  +  + S +    N+ ++
Sbjct: 32  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 88
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
             +D  + ++D  +G+ +   KGH   V C  F+P      SGS D ++RIW        
Sbjct: 89  ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 140
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
                  + +TGK   +    +  +   H N++G
Sbjct: 141 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 167

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 6   KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 62
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 63  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 118
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 119 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 176
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 177 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 236
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
            A+     G   ++G ED  V++++  T E +   +GH   V      P     AS +  
Sbjct: 237 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 296
Query: 290 EDGTIRIWQTN 300
            D TI++W+++
Sbjct: 297 NDKTIKLWKSD 307

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDT 114
           T  GH  AV S     N  + AS SAD   K+W A  G  EK    HK  +   A+S D+
Sbjct: 14  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
           +LL++   +K L+I+D++         G+S+  +    +      I+S   D   VR+WD
Sbjct: 74  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDES-VRIWD 131
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
            ++GK ++TL   S PV++   +RDG  I ++    + + WD                  
Sbjct: 132 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT----------------- 174
Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
                       A G+ +   + D             + PV  V+FSP G+   + + D 
Sbjct: 175 ------------ASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLDN 210
Query: 293 TIRIWQTNPPNHEENHSGTGNAQ 315
           T+++W  +     + ++G  N +
Sbjct: 211 TLKLWDYSKGKCLKTYTGHKNEK 233

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
           V+S + S +G ++ ++     +K W   D      + G+ +  +  + S +    N+ ++
Sbjct: 22  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 78
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
             +D  + ++D  +G+ +   KGH   V C  F+P      SGS D ++RIW        
Sbjct: 79  ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 130
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
                  + +TGK   +    +  +   H N++G
Sbjct: 131 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 157

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 16  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 72
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 73  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 129 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 186
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
            A+     G   ++G ED  V++++  T E +   +GH   V      P     AS +  
Sbjct: 247 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 290 EDGTIRIWQTN 300
            D TI++W+++
Sbjct: 307 NDKTIKLWKSD 317

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDT 114
           T  GH  AV S     N  + AS SAD   K+W A  G  EK    HK  +   A+S D+
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
           +LL++   +K L+I+D++         G+S+  +    +      I+S   D   VR+WD
Sbjct: 84  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDES-VRIWD 141
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
            ++GK ++TL   S PV++   +RDG  I ++    + + WD                  
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT----------------- 184
Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
                       A G+ +   + D             + PV  V+FSP G+   + + D 
Sbjct: 185 ------------ASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLDN 220
Query: 293 TIRIWQTNPPNHEENHSGTGNAQ 315
           T+++W  +     + ++G  N +
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEK 243

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
           V+S + S +G ++ ++     +K W   D      + G+ +  +  + S +    N+ ++
Sbjct: 32  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 88
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
             +D  + ++D  +G+ +   KGH   V C  F+P      SGS D ++RIW        
Sbjct: 89  ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 140
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
                  + +TGK   +    +  +   H N++G
Sbjct: 141 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 167

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 13  KPNYALMFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 70  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 126 VSGSFDESVRIWDV-KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 183
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
            A+     G   ++G ED  V++++  T E +   +GH   V      P     AS +  
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 290 EDGTIRIWQTN 300
            D TI++W+++
Sbjct: 304 NDKTIKLWKSD 314

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 11/221 (4%)
Query: 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160
           H   V +  FS +   L +   +K+++I+            G+  G I  VAW  SD  +
Sbjct: 25  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAW-SSDSNL 82
Query: 161 LSSCTDSGGVRLWDARSGKIVQTLETKSP-VTSAEVSRDGRYITTAD-GSSVKFWDANHF 218
           L S +D   +++WD  SGK ++TL+  S  V     +     I +     SV+ WD    
Sbjct: 83  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 219 GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK----GHHGPVH 274
             +K      +  SA    + G++ ++   D    ++D  +G+   C K      + PV 
Sbjct: 143 MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---CLKTLIDDDNPPVS 199
Query: 275 CVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQ 315
            V+FSP G+   + + D T+++W  +     + ++G  N +
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 240

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 145/321 (45%), Gaps = 47/321 (14%)
Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
           GH RP+  + Y+    +G  L S SKDSS  +     G+ +GT +GH G +WS  +D   
Sbjct: 30  GHERPLTQVKYNK---EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT 86
Query: 74  LFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILR------ 127
            +  +GSAD++ KLWD   G    +++    V+   FS   +  L    + +++      
Sbjct: 87  KYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFL-AILDNVMKNPGSIN 145
Query: 128 IFDLNRPDA----------PPREVGNSSG-SIRTVA-WLHSDQTILSSCTDSGGVRLWDA 175
           I+++ R  A          P  ++    G    TVA W    + I++   D G +  +D 
Sbjct: 146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD-GKISKYDV 204
Query: 176 RSG-KIVQTLET-KSPVTSAEVSRDGRYITTADGSSVKFW-DANHFGLVKGYNMPCNTES 232
            +  + V +++  +  ++  + S D  Y  T+   +  F  D +   ++K Y   C   +
Sbjct: 205 SNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNT 264
Query: 233 ASLEPKLGNIFIAGGED-----------------MWVHVFDFHTGEQIGCNKGHHGPVHC 275
           A + P    I + GG++                  +  +F+    E+IG  +GH GP++ 
Sbjct: 265 AVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE----EEIGRVQGHFGPLNT 320
Query: 276 VRFSPGGESYASGSEDGTIRI 296
           V  SP G SYASG EDG IR+
Sbjct: 321 VAISPQGTSYASGGEDGFIRL 341

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 149/311 (47%), Gaps = 22/311 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 13  KPNYALMFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 70  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 126 VSGSFDESVRIWDV-KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 183
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   + +K WD +    +K Y    N +   
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
            A+     G   ++G ED  V++++  T E +   +GH   V      P     AS +  
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 290 EDGTIRIWQTN 300
            D TI++W+++
Sbjct: 304 NDKTIKLWKSD 314

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 95/218 (43%), Gaps = 5/218 (2%)
Query: 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160
           H   V +  FS +   L +   +K+++I+            G+  G I  VAW  SD  +
Sbjct: 25  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAW-SSDSNL 82
Query: 161 LSSCTDSGGVRLWDARSGKIVQTLETKSP-VTSAEVSRDGRYITTAD-GSSVKFWDANHF 218
           L S +D   +++WD  SGK ++TL+  S  V     +     I +     SV+ WD    
Sbjct: 83  LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 219 GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG-CNKGHHGPVHCVR 277
             +K      +  SA    + G++ ++   D    ++D  +G+ +       + PV  V+
Sbjct: 143 MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 202
Query: 278 FSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQ 315
           FSP G+   + + D  +++W  +     + ++G  N +
Sbjct: 203 FSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEK 240

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L ++S D    +     G +  T  GHK 
Sbjct: 13  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLAASSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 70  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 126 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 183
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
            A+     G   ++G ED  V++++  T E +   +GH   V      P     AS +  
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 290 EDGTIRIWQTN 300
            D TI++W+++
Sbjct: 304 NDKTIKLWKSD 314

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDT 114
           T  GH  AV S     N  + A+ SAD   K+W A  G  EK    HK  +   A+S D+
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
           +LL++   +K L+I+D++         G+S+  +    +      I+S   D   VR+WD
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDES-VRIWD 138
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
            ++GK ++TL   S PV++   +RDG  I ++    + + WD                  
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT----------------- 181
Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
                       A G+ +   + D             + PV  V+FSP G+   + + D 
Sbjct: 182 ------------ASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLDN 217
Query: 293 TIRIWQTNPPNHEENHSGTGNAQ 315
           T+++W  +     + ++G  N +
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEK 240

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
           V+S + S +G ++  +     +K W   D      + G+ +  +  + S +    N+ ++
Sbjct: 29  VSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 85
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
             +D  + ++D  +G+ +   KGH   V C  F+P      SGS D ++RIW        
Sbjct: 86  ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 137
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
                  + +TGK   +    +  +   H N++G
Sbjct: 138 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 164

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 13  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 70  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 126 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 183
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
            A+     G   ++G ED  V++++  T E +   +GH   V      P     AS +  
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 290 EDGTIRIWQTN 300
            D TI++++++
Sbjct: 304 NDKTIKLYKSD 314

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDT 114
           T  GH  AV S     N  + AS SAD   K+W A  G  EK    HK  +   A+S D+
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
           +LL++   +K L+I+D++         G+S+  +    +      I+S   D   VR+WD
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDES-VRIWD 138
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
            ++GK ++TL   S PV++   +RDG  I ++    + + WD                  
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT----------------- 181
Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
                       A G+ +   + D             + PV  V+FSP G+   + + D 
Sbjct: 182 ------------ASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLDN 217
Query: 293 TIRIWQTNPPNHEENHSGTGNAQ 315
           T+++W  +     + ++G  N +
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEK 240

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
           V+S + S +G ++ ++     +K W   D      + G+ +  +  + S +    N+ ++
Sbjct: 29  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 85
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
             +D  + ++D  +G+ +   KGH   V C  F+P      SGS D ++RIW        
Sbjct: 86  ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 137
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
                  + +TGK   +    +  +   H N++G
Sbjct: 138 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 164

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3   KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
           K   A+     GH++ V  + +SP   +G +L S+S D    +     G +  T  GHK 
Sbjct: 13  KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63  AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
            +    WS   D+N L SAS   D T K+WD  +G    + + H + V  C F+  ++L+
Sbjct: 70  GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
           ++G F++ +RI+D+ +     + +   S  +  V +      I+SS  D G  R+WD  S
Sbjct: 126 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 183
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
           G+ ++TL  +   PV+  + S +G+YI  A   +++K WD +    +K Y    N +   
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
            A+     G   ++G ED  V++++  T E +   +GH   V      P     AS +  
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 290 EDGTIRIWQTN 300
            D TI++++++
Sbjct: 304 NDKTIKLFKSD 314

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDT 114
           T  GH  AV S     N  + AS SAD   K+W A  G  EK    HK  +   A+S D+
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
           +LL++   +K L+I+D++         G+S+  +    +      I+S   D   VR+WD
Sbjct: 81  NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDES-VRIWD 138
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
            ++GK ++TL   S PV++   +RDG  I ++    + + WD                  
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT----------------- 181
Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
                       A G+ +   + D             + PV  V+FSP G+   + + D 
Sbjct: 182 ------------ASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLDN 217
Query: 293 TIRIWQTNPPNHEENHSGTGNAQ 315
           T+++W  +     + ++G  N +
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEK 240

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
           V+S + S +G ++ ++     +K W   D      + G+ +  +  + S +    N+ ++
Sbjct: 29  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 85
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
             +D  + ++D  +G+ +   KGH   V C  F+P      SGS D ++RIW        
Sbjct: 86  ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 137
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
                  + +TGK   +    +  +   H N++G
Sbjct: 138 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 164

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 143/297 (48%), Gaps = 28/297 (9%)
Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           P V  GH   V+    + +   G  +VS S D++  + +  TG  + T  GH G VWS  
Sbjct: 111 PKVLKGHDDHVI----TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 166
Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHS-FEHKHIVRACAFSEDTHLLLTGGFEKILR 127
           +  N +   SGS D T K+W+A TG+  H+ + H   VR     E    +++G  +  LR
Sbjct: 167 MRDNIII--SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLR 222
Query: 128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187
           ++D+         +G+ + ++R V   +  + ++S   D   V++WD  +   + TL+  
Sbjct: 223 VWDIETGQCLHVLMGHVA-AVRCVQ--YDGRRVVSGAYDF-MVKVWDPETETCLHTLQGH 278
Query: 188 SPVTSAEVSRDGRYITTAD-GSSVKFWDA---NHFGLVKGYNMPCNTESASLEPKLGNIF 243
           +    + +  DG ++ +    +S++ WD    N    + G+     + ++ +E K  NI 
Sbjct: 279 TNRVYS-LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH----QSLTSGMELK-DNIL 332
Query: 244 IAGGEDMWVHVFDFHTGEQIGCNKG---HHGPVHCVRFSPGGESYASGSEDGTIRIW 297
           ++G  D  V ++D  TG+ +   +G   H   V C++F+       + S+DGT+++W
Sbjct: 333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLW 387

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 130/286 (45%), Gaps = 28/286 (9%)
Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
           GH  PV  + + P+      +VSAS+D++  + + ETGD+  T +GH  +V     D + 
Sbjct: 106 GHRSPVTRVIFHPVFS---VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 74  LFSASGSADFTAKLWDALTGDE--KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL 131
              AS SAD T KLWD   G E  +    H H V + +   +   +++   +K ++++++
Sbjct: 163 KLLASCSADMTIKLWD-FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221
Query: 132 NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVT 191
                     G+    +R V   + D T+++SC++   VR+W      +V T E K+ + 
Sbjct: 222 QTGYCVKTFTGHREW-VRMVR-PNQDGTLIASCSNDQTVRVW------VVATKECKAEL- 272
Query: 192 SAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMW 251
                R+ R++       + +   + +  +         +S     K G   ++G  D  
Sbjct: 273 -----REHRHVVEC----ISWAPESSYSSISEATGSETKKSG----KPGPFLLSGSRDKT 319
Query: 252 VHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
           + ++D  TG  +    GH   V  V F  GG+   S ++D T+R+W
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/229 (20%), Positives = 97/229 (42%), Gaps = 25/229 (10%)
Query: 95  EKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAW 153
           EK++   H+  V    F     ++++   +  ++++D    D   R +   + S++ +++
Sbjct: 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-RTLKGHTDSVQDISF 158
Query: 154 LHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS-PVTSAEVSRDGRYITTAD-GSSVK 211
            HS + +L+SC+    ++LWD +  + ++T+      V+S  +  +G +I +A    ++K
Sbjct: 159 DHSGK-LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 217
Query: 212 FWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHG 271
            W+      VK +             + G +  +   D  V V+   T E     + H  
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 277
Query: 272 PVHCVRFSP-----------GGES---------YASGSEDGTIRIWQTN 300
            V C+ ++P           G E+           SGS D TI++W  +
Sbjct: 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 116/264 (43%), Gaps = 20/264 (7%)
Query: 13  HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN 72
            GHS  V D+    I+ DG F +S S D +  L +  TG     F GH   V S    ++
Sbjct: 60  RGHSHFVSDVV---ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 73  ALFSASGSADFTAKLWDALTGDEKHSFE---HKHIVRACAFSEDTH--LLLTGGFEKILR 127
                SGS D T KLW+ L G  K++ +   H   V    FS ++   ++++ G++K+++
Sbjct: 117 NRQIVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 175
Query: 128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187
           +++L         +G+ +G + TV  +  D ++ +S    G   LWD   GK + TL+  
Sbjct: 176 VWNLANCKLKTNHIGH-TGYLNTVT-VSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 233
Query: 188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKL-------- 239
             + +   S +  ++  A G S+K WD     +V        + S+  EP          
Sbjct: 234 DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA 293
Query: 240 -GNIFIAGGEDMWVHVFDFHTGEQ 262
            G    AG  D  V V+    G +
Sbjct: 294 DGQTLFAGYTDNLVRVWQVTIGTR 317

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 16/201 (7%)
Query: 116 LLLTGGFEKILRIFDLNRPDA----PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
           ++L+   +K + ++ L R +     P R +   S  +  V      Q  LS   D G +R
Sbjct: 30  MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD-GTLR 88
Query: 172 LWDARSGKIVQTL--ETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN 229
           LWD  +G   +     TK  ++ A  S + + ++ +   ++K W  N  G+ K Y +   
Sbjct: 89  LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW--NTLGVCK-YTVQDE 145
Query: 230 TES-----ASLEPKLGN-IFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGE 283
           + S         P   N I ++ G D  V V++    +    + GH G ++ V  SP G 
Sbjct: 146 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS 205
Query: 284 SYASGSEDGTIRIWQTNPPNH 304
             ASG +DG   +W  N   H
Sbjct: 206 LCASGGKDGQAMLWDLNEGKH 226

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 28/210 (13%)
Query: 122 FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV 181
           + K+  I +L  P A     G ++  +  +AW H   +I++   ++G +RLW+ ++G ++
Sbjct: 85  YWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGV-ENGELRLWN-KTGALL 142
Query: 182 QTLET-KSPVTSAEVSRDGRYITTADGSSVK-FWDA------NHFGLVKGYNMPCNTESA 233
             L   ++P+ S + ++DG +I + D  +V   W+        HF L +      N E+ 
Sbjct: 143 NVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENH 202
Query: 234 SLEPKLG--------NIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESY 285
           S +  LG        + F+  G    + V+        G   GHHGP+  + F+   +  
Sbjct: 203 SGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL 262
Query: 286 ASGSEDGTIRIWQTNPPNHEENHSGTGNAQ 315
            S S+DGT+RIW          H G GN+Q
Sbjct: 263 LSASDDGTLRIW----------HGGNGNSQ 282

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 116/264 (43%), Gaps = 20/264 (7%)
Query: 13  HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN 72
            GHS  V D+    I+ DG F +S S D +  L +  TG     F GH   V S    ++
Sbjct: 83  RGHSHFVSDVV---ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 73  ALFSASGSADFTAKLWDALTGDEKHSFE---HKHIVRACAFSEDTH--LLLTGGFEKILR 127
                SGS D T KLW+ L G  K++ +   H   V    FS ++   ++++ G++K+++
Sbjct: 140 NRQIVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 198
Query: 128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187
           +++L         +G+ +G + TV  +  D ++ +S    G   LWD   GK + TL+  
Sbjct: 199 VWNLANCKLKTNHIGH-TGYLNTVT-VSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 256
Query: 188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKL-------- 239
             + +   S +  ++  A G S+K WD     +V        + S+  EP          
Sbjct: 257 DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA 316
Query: 240 -GNIFIAGGEDMWVHVFDFHTGEQ 262
            G    AG  D  V V+    G +
Sbjct: 317 DGQTLFAGYTDNLVRVWQVTIGTR 340

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 16/201 (7%)
Query: 116 LLLTGGFEKILRIFDLNRPDA----PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
           ++L+   +K + ++ L R +     P R +   S  +  V      Q  LS   D G +R
Sbjct: 53  MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD-GTLR 111
Query: 172 LWDARSGKIVQTL--ETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN 229
           LWD  +G   +     TK  ++ A  S + + ++ +   ++K W  N  G+ K Y +   
Sbjct: 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW--NTLGVCK-YTVQDE 168
Query: 230 TES-----ASLEPKLGN-IFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGE 283
           + S         P   N I ++ G D  V V++    +    + GH G ++ V  SP G 
Sbjct: 169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS 228
Query: 284 SYASGSEDGTIRIWQTNPPNH 304
             ASG +DG   +W  N   H
Sbjct: 229 LCASGGKDGQAMLWDLNEGKH 249

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 130/309 (42%), Gaps = 46/309 (14%)
Query: 2   DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           D +K  VP+    GHS  V D     +T DG + +SAS D +  L +  TG+    F GH
Sbjct: 50  DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
           K  V S  +D  A    SGS D T K+W      L     H+       +V      +D+
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
             +++ G +K+++ ++LN+       +G++S +I T+     D T+++S    G + LW+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIMLWN 224
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESAS 234
             + K + TL  +  V S   S +  ++  A  + +K +                    S
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF--------------------S 264
Query: 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTI 294
           L+P+              ++ D    E  G +K        + +S  G++  +G  D  I
Sbjct: 265 LDPQ--------------YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 295 RIWQTNPPN 303
           R+WQ    N
Sbjct: 311 RVWQVMTAN 319

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 130/309 (42%), Gaps = 46/309 (14%)
Query: 2   DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           D +K  VP+    GHS  V D     +T DG + +SAS D +  L +  TG+    F GH
Sbjct: 50  DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
           K  V S  +D  A    SGS D T K+W      L     H+       +V      +D+
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
             +++ G +K+++ ++LN+       +G++S +I T+     D T+++S    G + LW+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIMLWN 224
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESAS 234
             + K + TL  +  V S   S +  ++  A  + +K +                    S
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF--------------------S 264
Query: 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTI 294
           L+P+              ++ D    E  G +K        + +S  G++  +G  D  I
Sbjct: 265 LDPQ--------------YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 295 RIWQTNPPN 303
           R+WQ    N
Sbjct: 311 RVWQVMTAN 319

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 130/309 (42%), Gaps = 46/309 (14%)
Query: 2   DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           D +K  VP+    GHS  V D     +T DG + +SAS D +  L +  TG+    F GH
Sbjct: 44  DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 100
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
           K  V S  +D  A    SGS D T K+W      L     H+       +V      +D+
Sbjct: 101 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 160
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
             +++ G +K+++ ++LN+       +G++S +I T+     D T+++S    G + LW+
Sbjct: 161 VTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIMLWN 218
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESAS 234
             + K + TL  +  V S   S +  ++  A  + +K +                    S
Sbjct: 219 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF--------------------S 258
Query: 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTI 294
           L+P+              ++ D    E  G +K        + +S  G++  +G  D  I
Sbjct: 259 LDPQ--------------YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 304
Query: 295 RIWQTNPPN 303
           R+WQ    N
Sbjct: 305 RVWQVMTAN 313

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 129/304 (42%), Gaps = 46/304 (15%)
Query: 2   DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           D +K  VP+    GHS  V D     +T DG + +SAS D +  L +  TG+    F GH
Sbjct: 50  DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
           K  V S  +D  A    SGS D T K+W      L     H+       +V      +D+
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
             +++ G +K+++ ++LN+       +G++S +I T+     D T+++S    G + LW+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIMLWN 224
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESAS 234
             + K + TL  +  V S   S +  ++  A  + +K +                    S
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF--------------------S 264
Query: 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTI 294
           L+P+              ++ D    E  G +K        + +S  G++  +G  D  I
Sbjct: 265 LDPQ--------------YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 295 RIWQ 298
           R+WQ
Sbjct: 311 RVWQ 314

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 129/309 (41%), Gaps = 46/309 (14%)
Query: 2   DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           D +K  VP+    GHS  V D     +T DG + +SAS D +  L +  TG+    F GH
Sbjct: 50  DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
           K  V S  +D  A    SGS D T K+W      L     H+       +V      +D+
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
             +++ G +K+++ ++LN+       +G++S +I T+     D T+++S    G + LW+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIMLWN 224
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESAS 234
             + K + TL  +  V S   S +  ++  A  + +K +                    S
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF--------------------S 264
Query: 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTI 294
           L+P+              ++ D    E  G +         + +S  G++  +G  D  I
Sbjct: 265 LDPQ--------------YLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 295 RIWQTNPPN 303
           R+WQ    N
Sbjct: 311 RVWQVMTAN 319

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 128/309 (41%), Gaps = 46/309 (14%)
Query: 2   DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           D +K  VP+    GHS  V D     +T DG + +SAS D +  L +  TG+    F GH
Sbjct: 50  DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
           K  V S  +D  A    SGS D T K+W      L     H+       +V      +D+
Sbjct: 107 KSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
             +++ G +K ++ ++LN+       +G++S +I T+     D T+++S    G + LW+
Sbjct: 167 VTIISAGNDKXVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIXLWN 224
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESAS 234
             + K   TL  +  V S   S +  ++  A  + +K +                    S
Sbjct: 225 LAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF--------------------S 264
Query: 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTI 294
           L+P+              ++ D    E  G +K        + +S  G++  +G  D  I
Sbjct: 265 LDPQ--------------YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 295 RIWQTNPPN 303
           R+WQ    N
Sbjct: 311 RVWQVXTAN 319

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 102/250 (40%), Gaps = 42/250 (16%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDT 114
           T +GH G V+S        +  S S D    +W+ALT  + H+ + H   V  CAF+ + 
Sbjct: 61  TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 115 HLLLTGGFEKILRIFDL----NRPDAPP--REVGNSSGSIRTVAWLHSDQTILSSCTDSG 168
             +  GG +    IF+L    +R    P  R +    G   +  ++   +T L + +   
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 169 GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPC 228
              LWD  +G+ +    ++ P              TAD                      
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGH-----------TAD---------------------- 207
Query: 229 NTESASLEPKLGNIFIAGGEDMWVHVFDFH-TGEQIGCNKGHHGPVHCVRFSPGGESYAS 287
              S S+     N+FI+G  D  V ++D   T   +    GH G ++ V+F P G+ + +
Sbjct: 208 -VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGT 266
Query: 288 GSEDGTIRIW 297
           GS+DGT R++
Sbjct: 267 GSDDGTCRLF 276

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 119/293 (40%), Gaps = 40/293 (13%)
Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
           GHS  V D+    ++ DG F +S S D    L +   G     F GH   V S     + 
Sbjct: 428 GHSHFVEDVV---LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN 484
Query: 74  LFSASGSADFTAKLWDALTGDEKHSFE-----HKHIVRACAFSEDTH--LLLTGGFEKIL 126
               S S D T KLW+ L G+ K++       H+  V    FS +T    +++  ++K +
Sbjct: 485 RQIVSASRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV 543
Query: 127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET 186
           ++++L+         G++ G + TVA +  D ++ +S    G V LWD   GK + +LE 
Sbjct: 544 KVWNLSNCKLRSTLAGHT-GYVSTVA-VSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA 601
Query: 187 KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAG 246
            S + +   S +  ++  A    +K WD     +V+   +    E+              
Sbjct: 602 NSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEA-------------- 647
Query: 247 GEDMWVHVFDFHTGEQIGCNKGHHGPVHC--VRFSPGGESYASGSEDGTIRIW 297
                         +  G        ++C  + +S  G +  SG  DG IR+W
Sbjct: 648 -----------EKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 119/297 (40%), Gaps = 57/297 (19%)
Query: 56  TFEGHKGAVWSC--CLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSE 112
           T +GH   V     C D   + S+S   D    +WD+ T +++H+       V ACA++ 
Sbjct: 59  TLKGHGNKVLCMDWCKDKRRIVSSS--QDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP 116
Query: 113 DTHLLLTGGFEKILRIFDLN-----RPDAPPREVGNSSGSIRTVAWLHSDQTILSS---- 163
               +  GG +    ++ L         A  + V   +  +   ++ +SD  IL++    
Sbjct: 117 SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDG 176
Query: 164 ------------------------CTD-----------SGGV----RLWDARSGKIVQTL 184
                                   C D           SGG      +WD RSG+ VQ  
Sbjct: 177 TCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF 236
Query: 185 ET-KSPVTSAEVSRDG-RYITTADGSSVKFWDANHFGLVKGYNMPCNTESAS-LEPKL-G 240
           ET +S V S      G  + + +D ++ + +D      V  Y+       AS ++  L G
Sbjct: 237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG 296
Query: 241 NIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
            +  AG  D  ++V+D   G ++    GH   V  +R SP G ++ SGS D T+R+W
Sbjct: 297 RLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 108/258 (41%), Gaps = 25/258 (9%)
Query: 57  FEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTH 115
            EGH   V    L  N  F+ S S D + +LW+   G  ++ F  H   V + AFS D  
Sbjct: 63  LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 116 LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS-DQTILSSCTDSGGVRLWD 174
            +++GG +  LR++++          G  +  +  V +  S D  ++ S      V++WD
Sbjct: 123 QIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 175 ARSGKIVQTLETKSP-VTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
             +G++V  L+  +  VTS  VS DG    ++D   V + WD     L KG  +   +E 
Sbjct: 183 LATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD-----LTKGEAL---SEM 234
Query: 233 ASLEP------KLGNIFIAGGEDMWVHVFDFHTGEQI-GCNKGHHGPVHCV------RFS 279
           A+  P           ++    +  + +FD    + I      H G    V       +S
Sbjct: 235 AAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWS 294
Query: 280 PGGESYASGSEDGTIRIW 297
             G +  SG  D  IR+W
Sbjct: 295 ADGSTLYSGYTDNVIRVW 312

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 12/169 (7%)
Query: 137 PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI-VQTLETKSPVTSAEV 195
           P R +   S  +  VA L ++     S +    +RLW+ ++G+   + L     V S   
Sbjct: 59  PDRRLEGHSAFVSDVA-LSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAF 117
Query: 196 SRDGRYITTA-DGSSVKFWDAN---HFGLVKGYN---MPCNTESASLEPKLGNIFIAGGE 248
           S D R I +    ++++ W+        L +G +   + C   S SL+     + ++GG 
Sbjct: 118 SPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAP---VIVSGGW 174
Query: 249 DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
           D  V V+D  TG  +   KGH   V  V  SP G   AS  +DG  R+W
Sbjct: 175 DNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 110/292 (37%), Gaps = 50/292 (17%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
           T  GH   +++     ++    S S D    +WD+ T ++ H+   +   V  CA++   
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPR---------------------EVGNSSGSIRTVAW 153
           + +  GG + I  I++L   +   R                     ++  SSG      W
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 154 ----------------------LHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPV 190
                                 L  D  +  S       +LWD R G   QT    +S +
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 191 TSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGY---NMPCNTESASLEPKLGNIFIAG 246
            +     +G  + T +D ++ + +D      +  Y   N+ C   S S   K G + +AG
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF-SKSGRLLLAG 288
Query: 247 GEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298
            +D   +V+D    ++ G   GH   V C+  +  G + A+GS D  ++IW 
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 110/291 (37%), Gaps = 50/291 (17%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
           T  GH   +++     ++    S S D    +WD+ T ++ H+   +   V  CA++   
Sbjct: 61  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPR---------------------EVGNSSGSIRTVAW 153
           + +  GG + I  I++L   +   R                     ++  SSG      W
Sbjct: 121 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 180
Query: 154 ----------------------LHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPV 190
                                 L  D  +  S       +LWD R G   QT    +S +
Sbjct: 181 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 240
Query: 191 TSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGY---NMPCNTESASLEPKLGNIFIAG 246
            +     +G  + T +D ++ + +D      +  Y   N+ C   S S   K G + +AG
Sbjct: 241 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF-SKSGRLLLAG 299
Query: 247 GEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
            +D   +V+D    ++ G   GH   V C+  +  G + A+GS D  ++IW
Sbjct: 300 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 110/292 (37%), Gaps = 50/292 (17%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
           T  GH   +++     ++    S S D    +WD+ T ++ H+   +   V  CA++   
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPR---------------------EVGNSSGSIRTVAW 153
           + +  GG + I  I++L   +   R                     ++  SSG      W
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 154 ----------------------LHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPV 190
                                 L  D  +  S       +LWD R G   QT    +S +
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 191 TSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGY---NMPCNTESASLEPKLGNIFIAG 246
            +     +G  + T +D ++ + +D      +  Y   N+ C   S S   K G + +AG
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF-SKSGRLLLAG 288
Query: 247 GEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298
            +D   +V+D    ++ G   GH   V C+  +  G + A+GS D  ++IW 
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 101/238 (42%), Gaps = 22/238 (9%)
Query: 68  CLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIV-----RACAFSEDTHLLLTGGF 122
           CL  +     SG  D T K+WD      K++ E K I+            D  +++TG  
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWD------KNTLECKRILTGHTGSVLCLQYDERVIITGSS 191
Query: 123 EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ 182
           +  +R++D+N  +     + +       V  L  +  ++ +C+    + +WD  S   + 
Sbjct: 192 DSTVRVWDVNTGEMLNTLIHHCEA----VLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT 247
Query: 183 TLETKSPVTSAE--VSRDGRYITTADGS-SVKFWDANHFGLVKGYNMPCNTESASLEPKL 239
                    +A   V  D +YI +A G  ++K W+ +    V+  N       A L+ + 
Sbjct: 248 LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGH-KRGIACLQYR- 305
Query: 240 GNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
             + ++G  D  + ++D   G  +   +GH   V C+RF    +   SG+ DG I++W
Sbjct: 306 DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVW 361

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 110/292 (37%), Gaps = 50/292 (17%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
           T  GH   +++     ++    S S D    +WD+ T ++ H+   +   V  CA++   
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPR---------------------EVGNSSGSIRTVAW 153
           + +  GG + I  I++L   +   R                     ++  SSG      W
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 154 ----------------------LHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPV 190
                                 L  D  +  S       +LWD R G   QT    +S +
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 191 TSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGY---NMPCNTESASLEPKLGNIFIAG 246
            +     +G  + T +D ++ + +D      +  Y   N+ C   S S   K G + +AG
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF-SKSGRLLLAG 288
Query: 247 GEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298
            +D   +V+D    ++ G   GH   V C+  +  G + A+GS D  ++IW 
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/292 (21%), Positives = 110/292 (37%), Gaps = 50/292 (17%)
Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
           T  GH   +++     ++    S S D    +WD+ T ++ H+   +   V  CA++   
Sbjct: 50  TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPR---------------------EVGNSSGSIRTVAW 153
           + +  GG + I  I++L   +   R                     ++  SSG      W
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 154 ----------------------LHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPV 190
                                 L  D  +  S       +LWD R G   QT    +S +
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 191 TSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGY---NMPCNTESASLEPKLGNIFIAG 246
            +     +G  + T +D ++ + +D      +  Y   N+ C   S S   K G + +AG
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF-SKSGRLLLAG 288
Query: 247 GEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298
            +D   +V+D    ++ G   GH   V C+  +  G + A+GS D  ++IW 
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 103/244 (42%), Gaps = 27/244 (11%)
Query: 98  SFEHKHIVRACAFSEDTHLLLTGGFEK-----------ILRIFDLNRPDAPPREVGNSSG 146
           S +H  +V    FS D   L TG  +            + R+ D +  +  P  +  SS 
Sbjct: 60  SLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS 119
Query: 147 S-----IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGR 200
                 IR+V +   D   L++  +   +R+WD  + KIV  L+  +  + S +    G 
Sbjct: 120 PSSDLYIRSVCF-SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD 178
Query: 201 YITTADGS-SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT 259
            + +  G  +V+ WD          ++     + ++ P  G    AG  D  V V+D  T
Sbjct: 179 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238
Query: 260 G---EQIGCNK----GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTG 312
           G   E++        GH   V+ V F+  G+S  SGS D ++++W     N++ + S T 
Sbjct: 239 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD-SKTP 297
Query: 313 NAQT 316
           N+ T
Sbjct: 298 NSGT 301

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 20/135 (14%)
Query: 182 QTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVK-------GYNMPCNTESAS 234
           ++L+  S V   + S DG Y+ T    + + +  +   LV            P N  ++S
Sbjct: 59  KSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSS 118
Query: 235 ------------LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGG 282
                         P  G     G ED  + ++D    + +   +GH   ++ + + P G
Sbjct: 119 SPSSDLYIRSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 177
Query: 283 ESYASGSEDGTIRIW 297
           +   SGS D T+RIW
Sbjct: 178 DKLVSGSGDRTVRIW 192

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 73/173 (42%), Gaps = 29/173 (16%)
Query: 29  PDGFFLVSASKDSSPMLRNGETGDWI--GTFEGHKGAVWSCCLDANALFSASGSADFTAK 86
           P    L SAS D +  L   E  DW+   T EGH+  VWS   D +    AS S D T +
Sbjct: 160 PSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVR 219
Query: 87  LW-DALTGDEK----------------HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIF 129
           +W   L G+E+                 S  H   +   A+ + T  L T   +  +R+F
Sbjct: 220 IWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVF 279
Query: 130 DLNRPDAPPREVGNS---------SGSIRTVAWLHSDQTILSSCTDSGGVRLW 173
             + P++ P++   S         S  +  VAW   +  +L+SC+D G V  W
Sbjct: 280 QED-PNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 100/209 (47%), Gaps = 18/209 (8%)
Query: 112 EDTHLLLTGGFEKILRIFDL--NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169
           E++  ++TG  + +++++     R D      G+  G + +V   H+     SS  D+  
Sbjct: 46  ENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV-SVDISHTLPIAASSSLDAH- 103
Query: 170 VRLWDARSGKIVQTLETKSPVTSAEV--SRDGRYITTADGSSVKFWDANHFGLVKG---Y 224
           +RLWD  +GK +++++   PV +  +  S D +Y+ T  G+ V     N FG+  G   Y
Sbjct: 104 IRLWDLENGKQIKSIDA-GPVDAWTLAFSPDSQYLAT--GTHVG--KVNIFGVESGKKEY 158
Query: 225 NMPCNTE---SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPG 281
           ++    +   S +  P  G    +G  D  +++FD  TG+ +   +GH  P+  + FSP 
Sbjct: 159 SLDTRGKFILSIAYSPD-GKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPD 217
Query: 282 GESYASGSEDGTIRIWQTNPPNHEENHSG 310
            +   + S+DG I+I+     N     SG
Sbjct: 218 SQLLVTASDDGYIKIYDVQHANLAGTLSG 246

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 127/322 (39%), Gaps = 40/322 (12%)
Query: 11  VCHGHSRPVVDL---FYSPITPDGFFLVSASKDSSPML-------RNGETGDWIGTFEGH 60
           +  GHS  V  +   F      D   L+S S+D + M+       +NG  G       GH
Sbjct: 16  ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLT 119
              V    L     F+ S S D T +LWD  TG     F  H+  V + AFS D   +L+
Sbjct: 76  NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 120 GGFEKILRIFD-LNRPDAPPREVGNSSGSIRTVAW---LHSDQTI------LSSCTDSGG 169
            G E+ +++++ L        E  N S  +  V +   + S   +       +S    G 
Sbjct: 136 AGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR 195
Query: 170 VRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGL-VKGYNM 226
           +++W+  + +I  T +  +S V    +S +G+YI T      +  WD  +     + ++ 
Sbjct: 196 LKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA 254
Query: 227 PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGC-------------NKGHHGPV 273
                  +  PKL   ++A G D  V +F+  T  +                 KG +   
Sbjct: 255 GSTINQIAFNPKLQ--WVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQC 312
Query: 274 HCVRFSPGGESYASGSEDGTIR 295
             + ++  G+   +G  DG IR
Sbjct: 313 TSLAWNALGKKLFAGFTDGVIR 334

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 8/151 (5%)
Query: 156 SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP---VTSAEVSRDGRYITTADGSS-VK 211
           S   +L+   D+  V LW A SG I+Q L+ + P   ++S    ++G Y+     S+ V+
Sbjct: 114 SSGNVLAVALDNS-VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ 172
Query: 212 FWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ-IGCNKGHH 270
            WD      ++  NM  ++           I  +G     +H  D    E  +    GH 
Sbjct: 173 LWDVQQQKRLR--NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS 230
Query: 271 GPVHCVRFSPGGESYASGSEDGTIRIWQTNP 301
             V  +R++P G   ASG  D  + +W + P
Sbjct: 231 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 8/151 (5%)
Query: 156 SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP---VTSAEVSRDGRYITTADGSS-VK 211
           S   +L+   D+  V LW A SG I+Q L+ + P   ++S    ++G Y+     S+ V+
Sbjct: 125 SSGNVLAVALDNS-VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ 183
Query: 212 FWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ-IGCNKGHH 270
            WD      ++  NM  ++           I  +G     +H  D    E  +    GH 
Sbjct: 184 LWDVQQQKRLR--NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS 241
Query: 271 GPVHCVRFSPGGESYASGSEDGTIRIWQTNP 301
             V  +R++P G   ASG  D  + +W + P
Sbjct: 242 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 272

>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 107/230 (46%), Gaps = 20/230 (8%)
Query: 77  ASGSADFTAKLW---DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILR---IFD 130
           AS S D T +LW   D   G   ++   +  + +  +  +  LLL GG +  +    +F 
Sbjct: 33  ASVSRDGTVRLWSKDDQWLGTVVYT--GQGFLNSVCYDSEKELLLFGGKDTXINGVPLFA 90
Query: 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSP 189
            +  D     +G+  G++ ++++   D  ++S   D    ++W  + G +V  L+   + 
Sbjct: 91  TSGEDPLYTLIGHQ-GNVCSLSF--QDGVVISGSWDKTA-KVW--KEGSLVYNLQAHNAS 144
Query: 190 VTSAEVSR--DGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247
           V  A+V    + +++T +   ++K W  +   ++K ++   N     L       FI+  
Sbjct: 145 VWDAKVVSFSENKFLTASADKTIKLWQNDK--VIKTFSGIHNDVVRHLAVVDDGHFISCS 202
Query: 248 EDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
            D  + + D HTG+ +   +GH   V+C++  P G+  + G ED T+RIW
Sbjct: 203 NDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCG-EDRTVRIW 251

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 7/137 (5%)
Query: 170 VRLWDARSGKIVQTLETKSP---VTSAEVSRDGRYITTADGSS-VKFWDANHFGLVKGYN 225
           V LW A SG I+Q L+ + P   ++S    ++G Y+     S+ V+ WD      ++  N
Sbjct: 47  VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR--N 104
Query: 226 MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ-IGCNKGHHGPVHCVRFSPGGES 284
           M  ++           I  +G     +H  D    E  +    GH   V  +R++P G  
Sbjct: 105 MTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH 164
Query: 285 YASGSEDGTIRIWQTNP 301
            ASG  D  + +W + P
Sbjct: 165 LASGGNDNLVNVWPSAP 181

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 12/203 (5%)
Query: 33  FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92
           +++  S D    + N  TG+ +  FE H   + S  +     +  SGS D T KLW+   
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 93  G-DEKHSFE-HKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIR 149
               + +FE H+H V   AF+ +D     +G  ++ ++++ L +          ++G  R
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---NFTLTTGQER 185
Query: 150 TVAWLH----SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR--YIT 203
            V ++      D+  + + +D   +++WD ++   V TLE      S  V        I+
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 204 TADGSSVKFWDANHFGLVKGYNM 226
            ++  ++K W+++ + + K  N+
Sbjct: 246 GSEDGTLKIWNSSTYKVEKTLNV 268

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 89/225 (39%), Gaps = 12/225 (5%)
Query: 85  AKLWDALTGDEKHSFEHKHI-VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN 143
            +LW+  T  E  S +     VRA  F    + ++ G  +  +R+F+ N  +    +   
Sbjct: 37  VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV-VDFEA 95
Query: 144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETKSPVTSAEVSRDGRYI 202
               IR++A +H  +  + S +D   V+LW+  +   + QT E                 
Sbjct: 96  HPDYIRSIA-VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 203 TTADG---SSVKFWDANH----FGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVF 255
           T A G    +VK W        F L  G     N       P      I   +D+ + ++
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD-KPYMITASDDLTIKIW 213
Query: 256 DFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
           D+ T   +   +GH   V    F P      SGSEDGT++IW ++
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 12/203 (5%)
Query: 33  FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92
           +++  S D    + N  TG+ +  FE H   + S  +     +  SGS D T KLW+   
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 93  G-DEKHSFE-HKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIR 149
               + +FE H+H V   AF+ +D     +G  ++ ++++ L +          ++G  R
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---NFTLTTGQER 185
Query: 150 TVAWLH----SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR--YIT 203
            V ++      D+  + + +D   +++WD ++   V TLE      S  V        I+
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 204 TADGSSVKFWDANHFGLVKGYNM 226
            ++  ++K W+++ + + K  N+
Sbjct: 246 GSEDGTLKIWNSSTYKVEKTLNV 268

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 54/225 (24%), Positives = 89/225 (39%), Gaps = 12/225 (5%)
Query: 85  AKLWDALTGDEKHSFEHKHI-VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN 143
            +LW+  T  E  S +     VRA  F    + ++ G  +  +R+F+ N  +    +   
Sbjct: 37  VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV-VDFEA 95
Query: 144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETKSPVTSAEVSRDGRYI 202
               IR++A +H  +  + S +D   V+LW+  +   + QT E                 
Sbjct: 96  HPDYIRSIA-VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 203 TTADG---SSVKFWDANH----FGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVF 255
           T A G    +VK W        F L  G     N       P      I   +D+ + ++
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD-KPYMITASDDLTIKIW 213
Query: 256 DFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
           D+ T   +   +GH   V    F P      SGSEDGT++IW ++
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258

>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 98/249 (39%), Gaps = 31/249 (12%)
Query: 77  ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFS--EDTHLLLTGGFE-KILRIFDLNR 133
            S S D T K+WD  T      F  +  V +   S     H L+  G     +++ DL  
Sbjct: 116 TSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175
Query: 134 PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR------------SGKIV 181
                   G+    I  V+W      IL++ +    V+LWD R            +GK  
Sbjct: 176 GSCSHILQGHRQ-EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234
Query: 182 QTLETKSPVTSAEV-----SRDGRYI-TTADGSSVKFWDA-NHFGLVKGYNMPCNTESAS 234
           Q +E+ +   + +V     + DG ++ T    + ++ W++ N    +  Y   CN     
Sbjct: 235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKG 294
Query: 235 LEPKLGN------IFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASG 288
           L+  +        +F+  G    + V+  ++GEQI   KGH+  V C  F    +   SG
Sbjct: 295 LKFTVSCGCSSEFVFVPYGST--IAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSG 352
Query: 289 SEDGTIRIW 297
           S D  I  W
Sbjct: 353 SRDCNILAW 361

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/299 (19%), Positives = 115/299 (38%), Gaps = 69/299 (23%)
Query: 33  FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92
           ++++ + D    + +     ++    GH G VW+    A+     SGS D T ++WD   
Sbjct: 134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKK 192
Query: 93  GDEKHSFE-HKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNR---------------- 133
           G   H FE H   VR     E  +   ++TG  +  L ++ L +                
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 134 ---PDAPPREVGNSSG---SIRTVA----------------------------------- 152
              P+  P  VG   G   S+RTV+                                   
Sbjct: 253 FHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR 312
Query: 153 -----WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG 207
                + H  +  +S+  D+  +R+WD  +G+++ TL+  + +       D   ++ A  
Sbjct: 313 IYSTIYDHERKRCISASMDTT-IRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAAD 371
Query: 208 SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCN 266
            S++ WDAN +     Y+   N  + +      NI ++G E+ + ++++  +G+ +  N
Sbjct: 372 GSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSENQF-NIYNLRSGKLVHAN 428

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 96/207 (46%), Gaps = 20/207 (9%)
Query: 33  FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD--- 89
           +++  S D    + N  TG+ +  FE H   + S  +     +  SGS D T KLW+   
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 90  --ALTGDEKHSFE-HKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS 145
             AL    + +FE H+H V   AF+ +D     +G  ++ ++++ L +   P   +  ++
Sbjct: 129 NWAL----EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTL--TT 181
Query: 146 GSIRTVAWLHS----DQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR- 200
           G  R V ++      D+  + + +D   +++WD ++   V TLE      S  V      
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 201 -YITTADGSSVKFWDANHFGLVKGYNM 226
             I+ ++  ++K W+++ + + K  N+
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNV 268

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 88/224 (39%), Gaps = 12/224 (5%)
Query: 85  AKLWDALTGDEKHSFEHKHI-VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN 143
            +LW+  T  E  S +     VRA  F    + ++ G  +  +R+F+ N  +    +   
Sbjct: 37  VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV-DFEA 95
Query: 144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETKSPVTSAEVSRDGRYI 202
               IR++A +H  +  + S +D   V+LW+  +   + QT E                 
Sbjct: 96  HPDYIRSIA-VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 203 TTADG---SSVKFWDANH----FGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVF 255
           T A G    +VK W        F L  G     N       P      I   +D+ + ++
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD-KPYMITASDDLTIKIW 213
Query: 256 DFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299
           D+ T   +   +GH   V    F P      SGSEDGT++IW +
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 96/207 (46%), Gaps = 20/207 (9%)
Query: 33  FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD--- 89
           +++  S D    + N  TG+ +  FE H   + S  +     +  SGS D T KLW+   
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 90  --ALTGDEKHSFE-HKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS 145
             AL    + +FE H+H V   AF+ +D     +G  ++ ++++ L +   P   +  ++
Sbjct: 129 NWAL----EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS-TPNFTL--TT 181
Query: 146 GSIRTVAWLHS----DQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR- 200
           G  R V ++      D+  + + +D   +++WD ++   V TLE      S  V      
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 201 -YITTADGSSVKFWDANHFGLVKGYNM 226
             I+ ++  ++K W+++ + + K  N+
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNV 268

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 88/224 (39%), Gaps = 12/224 (5%)
Query: 85  AKLWDALTGDEKHSFEHKHI-VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN 143
            ++W+  T  E  S +     VRA  F    + ++ G  +  +R+F+ N  +    +   
Sbjct: 37  VEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV-DFEA 95
Query: 144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETKSPVTSAEVSRDGRYI 202
               IR++A +H  +  + S +D   V+LW+  +   + QT E                 
Sbjct: 96  HPDYIRSIA-VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 203 TTADG---SSVKFWDANH----FGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVF 255
           T A G    +VK W        F L  G     N       P      I   +D+ + ++
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD-KPYMITASDDLTIKIW 213
Query: 256 DFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299
           D+ T   +   +GH   V    F P      SGSEDGT++IW +
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/299 (19%), Positives = 114/299 (38%), Gaps = 69/299 (23%)
Query: 33  FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92
           ++++ + D    + +     ++    GH G VW+    A+     SGS D T ++WD   
Sbjct: 134 YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKK 192
Query: 93  GDEKHSFE-HKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNR---------------- 133
           G   H FE H   VR     E  +   ++TG  +  L ++ L +                
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 134 ---PDAPPREVGNSSG---SIRTVA----------------------------------- 152
              P+  P  VG   G   S+RTV+                                   
Sbjct: 253 FHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDR 312
Query: 153 -----WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG 207
                + H  +  +S+  D+  +R+WD  +G++  TL+  + +       D   ++ A  
Sbjct: 313 IYSTIYDHERKRCISASXDTT-IRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAAD 371
Query: 208 SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCN 266
            S++ WDAN +     Y+   N  + +      NI ++G E+ + ++++  +G+ +  N
Sbjct: 372 GSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSENQF-NIYNLRSGKLVHAN 428

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 99/236 (41%), Gaps = 20/236 (8%)
Query: 89  DALTGD-------EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP--DAPPR 139
           DAL G        + ++  H  +V A   S  T  + TGG +  ++++D++ P   +P  
Sbjct: 31  DALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVS 89
Query: 140 EVG--NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD--ARSGKIVQTLETKSPVTSA-E 194
           ++   N    IR+   L    T++    ++  + +WD  A + +I   L + +P   A  
Sbjct: 90  QLDCLNRDNYIRSCKLLPDGCTLIVG-GEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148
Query: 195 VSRDGR--YITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWV 252
           +S D +  +   +DG+ +  WD ++  LV+ +    +  S       G     GG D  V
Sbjct: 149 ISPDSKVCFSCCSDGN-IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV 207
Query: 253 HVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENH 308
             +D   G Q+         +  + + P GE  A G E   + +   N P+  + H
Sbjct: 208 RSWDLREGRQLQ-QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH 262

>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 71/181 (39%), Gaps = 44/181 (24%)
Query: 128 IFDLNRPDAPPREVGNSSG-----SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ 182
           I+    P+  P E   ++G      +  VAW+     +++S  DSG V LW        +
Sbjct: 72  IWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVAS--DSGAVELW--------E 121
Query: 183 TLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNI 242
            LE +S + +                  KF    H  +VK  ++  +          G  
Sbjct: 122 ILEKESLLVN------------------KFAKYEHDDIVKTLSVFSD----------GTQ 153
Query: 243 FIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGES-YASGSEDGTIRIWQTNP 301
            ++GG+D  V V+D      +     H   V+CV   PG ++ + S  EDG I +W T  
Sbjct: 154 AVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK 213
Query: 302 P 302
           P
Sbjct: 214 P 214

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 7/167 (4%)
Query: 54  IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS-FEHKHIVRACAFSE 112
           IGT +GH   V      ++ L  ASG  D   ++WDA +   K +   H   V+A A+  
Sbjct: 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP 269
Query: 113 -DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL-HSDQTILSSCTDSGGV 170
             ++LL TGG     +I   N          ++   + ++ W  HS + + +       +
Sbjct: 270 WQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNL 329
Query: 171 RLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITT-ADGSSVKFW 213
            +W   S  + + ++     + V  + +S DGR ++T A   ++KFW
Sbjct: 330 SIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 22/181 (12%)
Query: 11  VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCC 68
           V   HS+ V  + + P       L S+S D +  +      DW  +    GH+G VWS  
Sbjct: 148 VLQEHSQDVKHVIWHPSEA---LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSD 204
Query: 69  LD-ANALFS-ASGSADFTAKLWDALTGDEKHSFE----------HKHIVRACAFSEDTHL 116
            D    +F   SGS D T ++W  +  DE    E          HK  V   A+  +  L
Sbjct: 205 FDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-L 263
Query: 117 LLTGGFEKILRIF---DLNRPDAPPREVGNSSGSIRTVAWLHSD-QTILSSCTDSGGVRL 172
           + + G + +L ++   D        R + +    I  V WL  + +TIL++  D G V  
Sbjct: 264 IASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNF 323
Query: 173 W 173
           W
Sbjct: 324 W 324

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	350
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	100.0
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.98
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.98
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.98
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.94
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.93
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.93
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.93
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.91
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.91
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.89
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.86
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.86
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.85
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.85
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.84
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.83
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.82
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.82
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.82
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.8
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.8
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.8
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.79
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.79
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.78
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.76
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.74
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.74
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.73
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.72
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.71
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.71
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.71
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.7
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.7
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.69
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.69
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.68
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.67
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.67
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.67
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.66
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.66
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.66
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.65
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.64
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.63
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.63
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.61
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.6
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.56
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.54
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.52
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.51
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.49
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.44
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.44
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.43
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.42
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.42
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.4
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.4
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.39
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.39
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.38
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.37
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.37
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.36
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.34
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.33
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.33
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.33
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.31
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.3
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.29
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.29
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.27
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.25
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.23
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.21
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.21
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.18
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.18
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.16
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.14
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.12
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.09
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.07
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.99
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.98
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.98
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.97
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.93
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.91
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.9
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.9
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.89
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.87
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.87
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.85
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.84
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.83
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.81
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.8
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.79
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.79
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.78
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.78
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.78
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.76
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.75
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.74
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.67
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.63
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.59
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.59
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.58
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.53
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.49
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.49
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.42
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.42
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.4
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.39
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.39
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.38
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.37
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.33
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.33
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.3
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.29
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.28
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.25
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.23
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.22
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.18
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.16
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.07
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.01
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.0
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.99
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.96
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.91
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.91
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.89
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.86
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.86
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.81
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.78
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.74
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.67
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.64
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.63
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.61
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.58
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.58
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.52
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.48
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.38
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.36
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.36
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.22
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.19
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.15
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.99
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	96.93
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.85
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.77
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.69
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.56
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.56
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.41
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.31
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.23
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.11
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.08
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.77
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	95.77
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.5
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.33
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.99
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.95
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.86
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	94.85
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.78
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.46
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.17
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.53
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	93.25
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	92.77
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.16
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	92.04
3ott_A	758	Two-component system sensor histidine kinase; beta	92.03
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	90.37
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	88.44
3ott_A	758	Two-component system sensor histidine kinase; beta	82.98
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	81.27

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-47  Score=353.82  Aligned_cols=283  Identities=22%  Similarity=0.354  Sum_probs=250.5

Q ss_pred             EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~   90 (350)
                      .+.||.++|++++|+|   ++.+|++|+.|++|+|||..++++..++.+|.+.|.+++|++++.++++|+.|++|++||+
T Consensus       103 ~l~gh~~~V~~~~~~p---~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~  179 (410)
T 1vyh_C          103 ALSGHRSPVTRVIFHP---VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF  179 (410)
T ss_dssp             EEECCSSCEEEEEECS---SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             eecccCCcEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence            3579999999999997   8899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe
Q 018784           91 LTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (350)
Q Consensus        91 ~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~  169 (350)
                      .+++....+ .|...|.+++|+|++.+|++|+.|++|++||+.++.. ......|...+.++.+.+ ++.++++|+.|++
T Consensus       180 ~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~  257 (410)
T 1vyh_C          180 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC-VKTFTGHREWVRMVRPNQ-DGTLIASCSNDQT  257 (410)
T ss_dssp             TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECT-TSSEEEEEETTSC
T ss_pred             CCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-EEEEeCCCccEEEEEECC-CCCEEEEEcCCCe
Confidence            988877766 5889999999999999999999999999999987653 334567888899998864 6678899999999


Q ss_pred             EEEEECCCCceeEeecC-CCCeEEEEEecC--------------------CcEEE-EEcCCcEEEEECCCcceeeeeecC
Q 018784          170 VRLWDARSGKIVQTLET-KSPVTSAEVSRD--------------------GRYIT-TADGSSVKFWDANHFGLVKGYNMP  227 (350)
Q Consensus       170 i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~--------------------~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~  227 (350)
                      |++||++++++...+.. ...+.+++|+|+                    +.+++ ++.|+.|++||+++..++..+..+
T Consensus       258 v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h  337 (410)
T 1vyh_C          258 VRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH  337 (410)
T ss_dssp             EEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             EEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC
Confidence            99999999998888764 567999999986                    44555 456899999999999888877765


Q ss_pred             CCCc-eeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          228 CNTE-SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       228 ~~~~-~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                      .... .+.+.+ ++++|++|+.|+.|++||+.+++.+..+.+|...|++++|+|++++|++||.|++|++|++
T Consensus       338 ~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          338 DNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             SSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             CCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            5543 445554 6899999999999999999999999999999999999999999999999999999999986

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=5.8e-47  Score=335.64  Aligned_cols=290  Identities=19%  Similarity=0.237  Sum_probs=250.4

Q ss_pred             ccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeE
Q 018784            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (350)
Q Consensus         6 ~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v   85 (350)
                      +.....++||.++|.+++|+|   +|.+|++|+.|++|+|||.++++.+..+.+|...|.+++|++++.++++|+.|++|
T Consensus         3 l~~~~~~~~h~~~V~~~~fsp---~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i   79 (304)
T 2ynn_A            3 LDIKKTFSNRSDRVKGIDFHP---TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI   79 (304)
T ss_dssp             CCCEEEEEEECSCEEEEEECS---SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             ceeEEeecCCCCceEEEEECC---CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence            445556799999999999997   99999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEE
Q 018784           86 KLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (350)
Q Consensus        86 ~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~  164 (350)
                      ++||+.+++....+ .|...|.+++|+|++.+|++|+.|++|++||+.+..........|...|.+++|+|.++.++++|
T Consensus        80 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg  159 (304)
T 2ynn_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG  159 (304)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred             EEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence            99999999887776 58999999999999999999999999999999765444455667889999999998788899999


Q ss_pred             eCCCeEEEEECCCCceeEeec--CCCCeEEEEEec--CCcEEE-EEcCCcEEEEECCCcceeeeeecCCCCce-eEecCC
Q 018784          165 TDSGGVRLWDARSGKIVQTLE--TKSPVTSAEVSR--DGRYIT-TADGSSVKFWDANHFGLVKGYNMPCNTES-ASLEPK  238 (350)
Q Consensus       165 ~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~--~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~  238 (350)
                      +.|++|++||++++.....+.  +...+..+.+.|  ++.+++ ++.|+.|++||+++..++..+..+..... +.+.| 
T Consensus       160 s~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p-  238 (304)
T 2ynn_A          160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-  238 (304)
T ss_dssp             ETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-
T ss_pred             eCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECC-
Confidence            999999999998887665554  346788888886  666665 45689999999999988888876655443 44554 


Q ss_pred             CCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCC--EEEEecCCCcEEEecCC
Q 018784          239 LGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGE--SYASGSEDGTIRIWQTN  300 (350)
Q Consensus       239 ~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~--~lasgs~Dg~v~vw~~~  300 (350)
                      ++.+|++|+.|++|++||+.+++.+..+..|...+++++|+|++.  ++++|+.|| +.+|++.
T Consensus       239 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~  301 (304)
T 2ynn_A          239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLG  301 (304)
T ss_dssp             SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC
T ss_pred             CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEec
Confidence            578999999999999999999999999999999999999999875  578887665 6666654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.5e-46  Score=335.67  Aligned_cols=285  Identities=23%  Similarity=0.297  Sum_probs=245.1

Q ss_pred             eccCCceeEEEeccc-CCCccEEEEEeCCCCeeEeeCCCCce--eeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784           13 HGHSRPVVDLFYSPI-TPDGFFLVSASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~-s~dg~~lasgs~d~~v~iw~~~~~~~--~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd   89 (350)
                      ++|.++|++++|+|- .+++.+|+|||.|++|+||+..+++.  ...+.+|...|.++++++++.+++|++.|++|++||
T Consensus        29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd  108 (321)
T 3ow8_A           29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD  108 (321)
T ss_dssp             TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            699999999999873 23578999999999999999876653  457899999999999999999999999999999999


Q ss_pred             CCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784           90 ALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (350)
Q Consensus        90 ~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg  168 (350)
                      +.+++....+ .|...+.+++|+|++++|++|+.|+.|++|++..+... .....+...+.+++|++ ++.++++|+.|+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~-~~~~~~~~~v~~~~~sp-dg~~lasg~~dg  186 (321)
T 3ow8_A          109 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE-YSLDTRGKFILSIAYSP-DGKYLASGAIDG  186 (321)
T ss_dssp             TTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEE-EEEECSSSCEEEEEECT-TSSEEEEEETTS
T ss_pred             CCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCcee-EEecCCCceEEEEEECC-CCCEEEEEcCCC
Confidence            9998877766 46778999999999999999999999999999865433 33455677899999986 566888999999


Q ss_pred             eEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCC-ceeEecCCCCcEEEE
Q 018784          169 GVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIA  245 (350)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~s  245 (350)
                      +|++||+++++.+..+.. ..++.+++|+|++++|+++ .|+.|++||+++......+..+... ..+.+.| ++.+|++
T Consensus       187 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp-~~~~l~s  265 (321)
T 3ow8_A          187 IINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP-DDTHFVS  265 (321)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEE
T ss_pred             eEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC-CCCEEEE
Confidence            999999999999888875 4689999999999988765 5789999999988887776655443 3455655 5889999


Q ss_pred             ecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       246 g~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      |+.|++|++||+.+++++..+.+|...|++++|+|++++|++++.|+.|++||++
T Consensus       266 ~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          266 SSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            9999999999999999999999999999999999999999999999999999963

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.6e-46  Score=334.99  Aligned_cols=281  Identities=20%  Similarity=0.377  Sum_probs=245.4

Q ss_pred             EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~   90 (350)
                      .++||.++|++++|+|   |+++|++|+.|++|+|||..+++.+..+..|...|.+++|+|++.++++|+.|+.|++|++
T Consensus        50 ~l~gH~~~v~~~~~s~---d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~  126 (340)
T 1got_B           50 TLRGHLAKIYAMHWGT---DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             EECCCSSCEEEEEECT---TSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred             eecCCCCceEEEEECC---CCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            4689999999999986   9999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCe----eee-eeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe
Q 018784           91 LTGDE----KHS-FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (350)
Q Consensus        91 ~~~~~----~~~-~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~  165 (350)
                      .+...    ... ..|...|.++.|++++. +++++.|++|++||+.++.. ......|.+.|.+++|.+ ++.++++|+
T Consensus       127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~~~-~~~~l~sg~  203 (340)
T 1got_B          127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQ-TTTFTGHTGDVMSLSLAP-DTRLFVSGA  203 (340)
T ss_dssp             TTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECT-TSSEEEEEE
T ss_pred             ccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcE-EEEEcCCCCceEEEEECC-CCCEEEEEe
Confidence            76542    222 35889999999998875 88999999999999986543 334566888999999986 566888999


Q ss_pred             CCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCC---CCceeEecCCCC
Q 018784          166 DSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPC---NTESASLEPKLG  240 (350)
Q Consensus       166 ~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~  240 (350)
                      .|++|++||+++++++..+.. ..++.+++|+|++++++++ .|+.|++||+++...+..+..+.   ....+.+.+ ++
T Consensus       204 ~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~g  282 (340)
T 1got_B          204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SG  282 (340)
T ss_dssp             TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECT-TS
T ss_pred             CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECC-CC
Confidence            999999999999998888875 5689999999999887655 68999999999887776655432   234455655 68


Q ss_pred             cEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          241 NIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       241 ~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      ++|++|+.|+.|++||+.+++.+..+.+|..+|.+++|+|++.+|+|||.|+.|+|||
T Consensus       283 ~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            9999999999999999999999999999999999999999999999999999999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.6e-45  Score=333.32  Aligned_cols=284  Identities=22%  Similarity=0.320  Sum_probs=246.5

Q ss_pred             eEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (350)
Q Consensus        10 ~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd   89 (350)
                      ..++||.++|++++|+|   ++++|||||.|++|+|||..+++....+..|...|.+++|+|++.++++|+.|+.+++|+
T Consensus        58 ~~l~gH~~~V~~~~~s~---d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           58 RTLKGHGNKVLCMDWCK---DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             EEEECCSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEecCCCCeEEEEEECC---CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            34689999999999986   999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC-------eeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCC-CCcEE
Q 018784           90 ALTGD-------EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS-DQTIL  161 (350)
Q Consensus        90 ~~~~~-------~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~  161 (350)
                      +....       ......|...|.+++|+|++..|++++.|++|++||+.++.. ......|...+.++++.+. ++.++
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~g~~l  213 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL-LQSFHGHGADVLCLDLAPSETGNTF  213 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECCCSSCCEE
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE-EEEEcCCCCCeEEEEEEeCCCCCEE
Confidence            75432       122235899999999999999999999999999999987653 3445668888999998865 46789


Q ss_pred             EEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCC---CceeEec
Q 018784          162 SSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN---TESASLE  236 (350)
Q Consensus       162 ~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~  236 (350)
                      ++|+.|++|++||+++++++..+.. ...|++++|+|++.+++++ .|+.|++||++....+..+.....   ...+.+.
T Consensus       214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s  293 (354)
T 2pbi_B          214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS  293 (354)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred             EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEe
Confidence            9999999999999999999888875 5689999999999887654 689999999998776655543321   2344555


Q ss_pred             CCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          237 PKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       237 ~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      + ++.++++|+.|+.|++||+.+++.+..+.+|..+|++++|+|++++|++|+.|++|+||+
T Consensus       294 ~-~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          294 L-SGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             T-TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             C-CCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            4 589999999999999999999999999999999999999999999999999999999995

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5.2e-45  Score=323.76  Aligned_cols=289  Identities=27%  Similarity=0.471  Sum_probs=252.0

Q ss_pred             cceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEE
Q 018784            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (350)
Q Consensus         7 ~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~   86 (350)
                      .+...+.||.++|.+++|+|   +|++||+|+.|++++||+..+++....+.+|...|.+++|++++.++++++.|+.|+
T Consensus        14 ~~~~~~~gh~~~v~~~~~s~---~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~   90 (312)
T 4ery_A           14 ALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLK   90 (312)
T ss_dssp             EEEEEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             eeEEEEcccCCcEEEEEECC---CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEE
Confidence            33445689999999999987   999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe
Q 018784           87 LWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (350)
Q Consensus        87 vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~  165 (350)
                      +||+.+++.+..+ .|...|.+++|+|++++|++|+.|+.|++||+.+... ......|...+.+++|.+ ++.++++++
T Consensus        91 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~  168 (312)
T 4ery_A           91 IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNR-DGSLIVSSS  168 (312)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECT-TSSEEEEEE
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE-EEEecCCCCcEEEEEEcC-CCCEEEEEe
Confidence            9999998877766 4889999999999999999999999999999986543 344566788899999975 566788999


Q ss_pred             CCCeEEEEECCCCceeEeec--CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCC---ceeEecCCC
Q 018784          166 DSGGVRLWDARSGKIVQTLE--TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNT---ESASLEPKL  239 (350)
Q Consensus       166 ~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~  239 (350)
                      .|+.|++||+++++.+..+.  ...++..++|+|++++++++ .++.|++||+++.+.+..+..+...   ....+.+..
T Consensus       169 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (312)
T 4ery_A          169 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG  248 (312)
T ss_dssp             TTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSS
T ss_pred             CCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCC
Confidence            99999999999998877764  34578999999999887655 5899999999998887776554332   233445556


Q ss_pred             CcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEec--CCCcEEEecCC
Q 018784          240 GNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS--EDGTIRIWQTN  300 (350)
Q Consensus       240 ~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs--~Dg~v~vw~~~  300 (350)
                      +.++++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++  .|++|++|+.+
T Consensus       249 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          249 GKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             CcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            88999999999999999999999999999999999999999999999987  69999999864

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2.3e-45  Score=327.57  Aligned_cols=292  Identities=20%  Similarity=0.306  Sum_probs=245.2

Q ss_pred             ccccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC-----CceeeeccCccCCeEEEEECCCCcEEEE
Q 018784            4 RKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-----GDWIGTFEGHKGAVWSCCLDANALFSAS   78 (350)
Q Consensus         4 ~~~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~-----~~~~~~l~gH~~~V~~v~~~~~~~~l~s   78 (350)
                      +.+.+.-.+.||+++|.+++|+|  .++.+|+|||.|++|++|+...     +.++..+.+|...|.+++|++++.+++|
T Consensus         5 ~~~~l~~~l~gH~~~V~~l~~~~--~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s   82 (319)
T 3frx_A            5 EVLVLRGTLEGHNGWVTSLATSA--GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALS   82 (319)
T ss_dssp             EEEEEEEEECCCSSCEEEEEECS--SCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             eEEEEEEEEccccceEEEEEccC--CCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEE
Confidence            44455556789999999999987  2347999999999999999753     3457789999999999999999999999


Q ss_pred             eeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCC-
Q 018784           79 GSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS-  156 (350)
Q Consensus        79 ~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-  156 (350)
                      |+.|++|++||+.+++....+ .|...|.+++|+|++.+|++|+.|++|++||+...  .......|...+.++.+.+. 
T Consensus        83 ~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~--~~~~~~~h~~~v~~~~~~~~~  160 (319)
T 3frx_A           83 ASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNE  160 (319)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECCC-
T ss_pred             EeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEeccCCcEEEEEEccCC
Confidence            999999999999999877766 59999999999999999999999999999999632  23445678889999999864 


Q ss_pred             ----CCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCC
Q 018784          157 ----DQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNT  230 (350)
Q Consensus       157 ----~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~  230 (350)
                          +...+++++.|++|++||+++++....+.. ..++.+++|+|++++|+++ .|+.|++||+++.+.+..+..+...
T Consensus       161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v  240 (319)
T 3frx_A          161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV  240 (319)
T ss_dssp             -----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCE
T ss_pred             CCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcE
Confidence                345889999999999999999988777764 5789999999999988765 6899999999999888887766656


Q ss_pred             ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec--------CCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784          231 ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK--------GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       231 ~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~--------~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~  301 (350)
                      ..+.+.| ++.++++++. ..+++|++..+..+..+.        .|...+.+++|+|+|++|++|+.|+.|+|||+.+
T Consensus       241 ~~~~~sp-~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          241 FSLAFSP-NRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             EEEEECS-SSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             EEEEEcC-CCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence            6677776 4677777664 559999998877665543        3466799999999999999999999999999754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.2e-46  Score=341.19  Aligned_cols=287  Identities=22%  Similarity=0.329  Sum_probs=244.5

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      ++||.++|++++|+|   +|.+|+|||.|++|+|||..+++....+.+|...|.+++|+|++.++++|+.|+.|++||+.
T Consensus        62 l~gH~~~V~~~~~sp---~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~  138 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTP---EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLS  138 (380)
T ss_dssp             ECCCSSCEEEEEECT---TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECC
T ss_pred             ccccccEEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECC
Confidence            589999999999987   99999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CCCe-------ee-eeeccccEeEEEEcCC-CCeEEEeeCCCeEEEEECCCCCCCCee----ecCCCCcEEEEEEeCCCC
Q 018784           92 TGDE-------KH-SFEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPPRE----VGNSSGSIRTVAWLHSDQ  158 (350)
Q Consensus        92 ~~~~-------~~-~~~h~~~V~~~~~~~~-~~~l~sg~~d~~v~vwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~~  158 (350)
                      +...       .. ...|...|.++.|+|+ +..|++|+.|++|++||+.++......    ...|...+.++.|.+.++
T Consensus       139 ~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  218 (380)
T 3iz6_a          139 SQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNA  218 (380)
T ss_dssp             CCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSC
T ss_pred             CCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCC
Confidence            5321       11 2358889999999996 457999999999999999876533211    145778899999988888


Q ss_pred             cEEEEEeCCCeEEEEECCC-CceeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCC------
Q 018784          159 TILSSCTDSGGVRLWDARS-GKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN------  229 (350)
Q Consensus       159 ~~~~s~~~dg~i~iwd~~~-~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~------  229 (350)
                      .++++|+.|++|++||++. ++.+..+.. ...|.+++|+|++++++++ .|+.|++||+++...+..+..+..      
T Consensus       219 ~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~  298 (380)
T 3iz6_a          219 NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNEL  298 (380)
T ss_dssp             CEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSS
T ss_pred             CEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccccccc
Confidence            8999999999999999984 466666664 5689999999999887765 589999999999887776654321      


Q ss_pred             --CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEee----cCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCC
Q 018784          230 --TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCN----KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPP  302 (350)
Q Consensus       230 --~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~----~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~  302 (350)
                        ...+.+.+ +++++++|+.|+.|++||+.+++.+..+    .+|.+.|++++|+|++.+|+|||.|++|++|++...
T Consensus       299 ~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          299 PIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             CSCSEEEECS-SSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             CceEEEEECC-CCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence              23455555 5899999999999999999998887766    689999999999999999999999999999998643

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2e-45  Score=333.13  Aligned_cols=285  Identities=18%  Similarity=0.209  Sum_probs=229.2

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeC------CCCeeEeeCCCCceee----eccCccCCeEEEEECCCCcEEEEeeCC
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASK------DSSPMLRNGETGDWIG----TFEGHKGAVWSCCLDANALFSASGSAD   82 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~------d~~v~iw~~~~~~~~~----~l~gH~~~V~~v~~~~~~~~l~s~s~D   82 (350)
                      .+|+..|.+|+|+|   ||++||+||.      |+++++|+..++....    ...+|...|.+++|+|++.++ +++.|
T Consensus        39 ~~H~~~V~~v~fSp---DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~d  114 (357)
T 4g56_B           39 ACMEVQIGAVRYRR---DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDS  114 (357)
T ss_dssp             -CCCSEEEEEEECS---SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETT
T ss_pred             ccccCCEEEEEECC---CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECC
Confidence            57999999999997   9999999997      6778889887765543    345799999999999998765 57889


Q ss_pred             CeEEEeeCCCCCeee-----eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCC
Q 018784           83 FTAKLWDALTGDEKH-----SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD  157 (350)
Q Consensus        83 g~v~vWd~~~~~~~~-----~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (350)
                      |+|+|||+.+++...     ...|...|.+++|+|++++|++|+.|++|++||+.++.. ......|...|.+++|++.+
T Consensus       115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~-~~~~~~h~~~v~~v~~s~~~  193 (357)
T 4g56_B          115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAV-LKSYNAHSSEVNCVAACPGK  193 (357)
T ss_dssp             SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTC
T ss_pred             CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE-EEEEcCCCCCEEEEEEccCC
Confidence            999999998776433     235889999999999999999999999999999986543 33446688899999999887


Q ss_pred             CcEEEEEeCCCeEEEEECCCCceeEeec---CCCCeEEEEEecCC-cEEEE-EcCCcEEEEECCCcceeeeeecCCCC-c
Q 018784          158 QTILSSCTDSGGVRLWDARSGKIVQTLE---TKSPVTSAEVSRDG-RYITT-ADGSSVKFWDANHFGLVKGYNMPCNT-E  231 (350)
Q Consensus       158 ~~~~~s~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~-~~l~~-~~~~~i~vwd~~~~~~~~~~~~~~~~-~  231 (350)
                      ..++++++.|++|++||++++++...+.   ....+.+++|+|++ .++++ +.++.|++||+++.++++.+..+... .
T Consensus       194 ~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~  273 (357)
T 4g56_B          194 DTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNIT  273 (357)
T ss_dssp             SSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEE
T ss_pred             CceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEE
Confidence            7788999999999999999998776654   34578999999974 56655 46889999999999888877665443 4


Q ss_pred             eeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcC-CCCEEEEecCCCcEEEecCCCCC
Q 018784          232 SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSP-GGESYASGSEDGTIRIWQTNPPN  303 (350)
Q Consensus       232 ~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp-~~~~lasgs~Dg~v~vw~~~~~~  303 (350)
                      .+.+.+...++|++|+.|++|+|||+.+++.+..+ +|.+.|++|+|+| ++.+|+|||.|++|++|++....
T Consensus       274 ~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          274 GLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             EEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             EEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            56677766688999999999999999998877654 8999999999998 78999999999999999986543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=6.5e-45  Score=327.92  Aligned_cols=284  Identities=16%  Similarity=0.154  Sum_probs=230.9

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC-----------ceeeeccCccCCeEEEEECCCCcEEEEeeC
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-----------DWIGTFEGHKGAVWSCCLDANALFSASGSA   81 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~-----------~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~   81 (350)
                      ..|...|.+++|+|   ||++|++++ |+++|+||....           ........|...|.+++|++++ .+++|+.
T Consensus        27 ~~~~~~v~~~~fs~---dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~  101 (344)
T 4gqb_B           27 ACMERQLEAARYRS---DGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASD  101 (344)
T ss_dssp             SSCCSEEEEEEECT---TSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEET
T ss_pred             ccccCCEEEEEECC---CCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEEC
Confidence            46788899999987   999999888 789999984311           1111223366789999999986 5679999


Q ss_pred             CCeEEEeeCCCCCeeeee-----eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCC
Q 018784           82 DFTAKLWDALTGDEKHSF-----EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS  156 (350)
Q Consensus        82 Dg~v~vWd~~~~~~~~~~-----~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~  156 (350)
                      ||+|+|||+.+++....+     .|...|++++|+|++++|++|+.|++|++||+.++.. ......|.+.|.+++|++.
T Consensus       102 dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~-~~~~~~h~~~V~~~~~~~~  180 (344)
T 4gqb_B          102 SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV-LSSYRAHAAQVTCVAASPH  180 (344)
T ss_dssp             TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECSS
T ss_pred             CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE-EEEEcCcCCceEEEEecCC
Confidence            999999999888754432     5899999999999999999999999999999987543 3445678899999999988


Q ss_pred             CCcEEEEEeCCCeEEEEECCCCceeEeecC---CCCeEEEEEecC-CcEEEE-EcCCcEEEEECCCcceeeeeecCCCC-
Q 018784          157 DQTILSSCTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRD-GRYITT-ADGSSVKFWDANHFGLVKGYNMPCNT-  230 (350)
Q Consensus       157 ~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~-~~~l~~-~~~~~i~vwd~~~~~~~~~~~~~~~~-  230 (350)
                      +..++++|+.|++|++||++++++...+..   ...+.+++|+|+ ++++++ +.|+.|++||+++.+++..+..+... 
T Consensus       181 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v  260 (344)
T 4gqb_B          181 KDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCV  260 (344)
T ss_dssp             CTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCE
T ss_pred             CCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCE
Confidence            888999999999999999999998887753   346889999985 566665 56899999999999988888766544 


Q ss_pred             ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCC-EEEEecCCCcEEEecCCCCC
Q 018784          231 ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGE-SYASGSEDGTIRIWQTNPPN  303 (350)
Q Consensus       231 ~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~-~lasgs~Dg~v~vw~~~~~~  303 (350)
                      ..+.+.|...++|++|+.|++|++||+.+++.+ .+.+|.+.|++++|+|+++ +|+|||.|++|++|++....
T Consensus       261 ~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          261 TGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             EEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred             EEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence            456677655578999999999999999988765 5789999999999999986 57899999999999987544

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.7e-44  Score=320.33  Aligned_cols=287  Identities=20%  Similarity=0.297  Sum_probs=242.2

Q ss_pred             EeeccCCceeEEEecccCCC-ccEEEEEeCCCCeeEeeCCCC-----ceeeeccCccCCeEEEEECCCCcEEEEeeCCCe
Q 018784           11 VCHGHSRPVVDLFYSPITPD-GFFLVSASKDSSPMLRNGETG-----DWIGTFEGHKGAVWSCCLDANALFSASGSADFT   84 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~d-g~~lasgs~d~~v~iw~~~~~-----~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~   84 (350)
                      .++||+++|++|+|+|   + +++|||||.|++|+|||+.+.     .+..++.+|...|.+++|++++.++++++.|+.
T Consensus        33 tL~GH~~~V~~v~~sp---~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~  109 (340)
T 4aow_A           33 TLKGHNGWVTQIATTP---QFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT  109 (340)
T ss_dssp             EECCCSSCEEEEEECT---TCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             EECCccCCEEEEEEeC---CCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence            4689999999999997   5 679999999999999998654     356789999999999999999999999999999


Q ss_pred             EEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCC-CcEEE
Q 018784           85 AKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD-QTILS  162 (350)
Q Consensus        85 v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~  162 (350)
                      |++|+.......... .+...+..+.+++++.+|++++.|+.+++||+............|...+..++|.+.. ..+++
T Consensus       110 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  189 (340)
T 4aow_A          110 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV  189 (340)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE
T ss_pred             ceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE
Confidence            999999877655544 4667788999999999999999999999999875544334455678889999988654 45788


Q ss_pred             EEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCCceeEecCCCC
Q 018784          163 SCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG  240 (350)
Q Consensus       163 s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (350)
                      +++.|++|++||+++++.+..+.. ..+|++++|+|++++|+++ .|+.|++||+++...+..+........+.+.+  +
T Consensus       190 s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~--~  267 (340)
T 4aow_A          190 SCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP--N  267 (340)
T ss_dssp             EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECS--S
T ss_pred             EEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCC--C
Confidence            999999999999999998888775 5689999999999888664 68999999999998888777665555555655  3


Q ss_pred             cEEEEecCCCeEEEEEcccCeeEEee---------cCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCC
Q 018784          241 NIFIAGGEDMWVHVFDFHTGEQIGCN---------KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPP  302 (350)
Q Consensus       241 ~~l~sg~~d~~i~v~d~~~~~~~~~~---------~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~  302 (350)
                      ..+++++.|+.|++||+.++..+..+         .+|...|++++|+|++++|++|+.||.|+|||+.++
T Consensus       268 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          268 RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             SSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred             CceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence            56777788999999999887765543         468899999999999999999999999999998654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.6e-44  Score=323.97  Aligned_cols=289  Identities=23%  Similarity=0.330  Sum_probs=230.7

Q ss_pred             eEeeccCCceeEEEecc--cC-CCccEEEEEeCCCCeeEeeCCC-------CceeeeccCccCCeEEEEECCCCcEEEEe
Q 018784           10 LVCHGHSRPVVDLFYSP--IT-PDGFFLVSASKDSSPMLRNGET-------GDWIGTFEGHKGAVWSCCLDANALFSASG   79 (350)
Q Consensus        10 ~~~~gH~~~v~~~~~~~--~s-~dg~~lasgs~d~~v~iw~~~~-------~~~~~~l~gH~~~V~~v~~~~~~~~l~s~   79 (350)
                      .+++||+++|++++|.+  .+ +++.+|||||.|++|+|||..+       +.+...+.+|...|.+++|++++.+++||
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~   94 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS   94 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEE
T ss_pred             eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEE
Confidence            34689999999999821  12 3899999999999999999864       34567899999999999999999999999


Q ss_pred             eCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCC-CeeecCCCCcEEEEEEeCCC
Q 018784           80 SADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP-PREVGNSSGSIRTVAWLHSD  157 (350)
Q Consensus        80 s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~  157 (350)
                      +.|++|++||+.+++....+ .|...|.+++|+|++++|++++.|++|++||+...... ......|...+.+++|.+..
T Consensus        95 s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  174 (343)
T 2xzm_R           95 SWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIM  174 (343)
T ss_dssp             ETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCC
T ss_pred             cCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecccc
Confidence            99999999999998877766 59999999999999999999999999999998632110 01112577889999998754


Q ss_pred             ---------CcEEEEEeCCCeEEEEECCCCceeEeec-CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCc-ceeeeee
Q 018784          158 ---------QTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHF-GLVKGYN  225 (350)
Q Consensus       158 ---------~~~~~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~-~~~~~~~  225 (350)
                               ..++++++.|++|++||. +.+....+. +..++.+++|+|++++|+++ .|+.|++||++.. .....+.
T Consensus       175 ~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~  253 (343)
T 2xzm_R          175 KSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD  253 (343)
T ss_dssp             CSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE
T ss_pred             ccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec
Confidence                     268899999999999994 455555554 45789999999999988765 6899999999543 3333333


Q ss_pred             cCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEE--eec-----------CCCcCEEEEEEcCCCCEEEEecCCC
Q 018784          226 MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG--CNK-----------GHHGPVHCVRFSPGGESYASGSEDG  292 (350)
Q Consensus       226 ~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~--~~~-----------~h~~~v~~l~~sp~~~~lasgs~Dg  292 (350)
                      .......+.+.|. +.+++ ++.|+.|++||+.+++...  .+.           +|...|.+++|+|++++|++|+.||
T Consensus       254 ~~~~v~~v~~sp~-~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg  331 (343)
T 2xzm_R          254 AGSTINQIAFNPK-LQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDG  331 (343)
T ss_dssp             CSSCEEEEEECSS-SCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTS
T ss_pred             CCCcEEEEEECCC-CCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCc
Confidence            3334456667664 56655 5568889999998765432  332           7888999999999999999999999


Q ss_pred             cEEEecCCC
Q 018784          293 TIRIWQTNP  301 (350)
Q Consensus       293 ~v~vw~~~~  301 (350)
                      .|++|++..
T Consensus       332 ~v~~w~~~~  340 (343)
T 2xzm_R          332 VIRTFSFET  340 (343)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEEc
Confidence            999998753

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.2e-44  Score=346.69  Aligned_cols=287  Identities=20%  Similarity=0.304  Sum_probs=236.6

Q ss_pred             eeccCCceeEEEecccCCCcc-EEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784           12 CHGHSRPVVDLFYSPITPDGF-FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~-~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~   90 (350)
                      +.||.++|.+++|+|   ++. +|++|+.|+++++||..+++++.++.+|.+.|++++|+|++.+|+|++.|++|++||.
T Consensus       143 l~gh~~~v~~v~f~p---~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~  219 (611)
T 1nr0_A          143 LTGQARAMNSVDFKP---SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG  219 (611)
T ss_dssp             CCCCSSCEEEEEECS---SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ecCCCCCceEEEECC---CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEEC
Confidence            479999999999997   765 6999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeeeee--------eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC------------------------
Q 018784           91 LTGDEKHSF--------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP------------------------  138 (350)
Q Consensus        91 ~~~~~~~~~--------~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~------------------------  138 (350)
                      .+++....+        .|...|.+++|+|++++|++++.|++|++||+.++....                        
T Consensus       220 ~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  299 (611)
T 1nr0_A          220 VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVS  299 (611)
T ss_dssp             TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEE
T ss_pred             CCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEE
Confidence            988877766        589999999999999999999999999999997543211                        


Q ss_pred             ------------------eeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEee----------------
Q 018784          139 ------------------REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL----------------  184 (350)
Q Consensus       139 ------------------~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~----------------  184 (350)
                                        .....|...|.+++|++ ++.++++++.|++|++||+++++....+                
T Consensus       300 ~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~  378 (611)
T 1nr0_A          300 ISANGFINFVNPELGSIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK  378 (611)
T ss_dssp             EETTCCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT
T ss_pred             EeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCC
Confidence                              12235788899999986 6678889999999999999876543221                


Q ss_pred             -------------------------------------------------------------------cCCCCeEEEEEec
Q 018784          185 -------------------------------------------------------------------ETKSPVTSAEVSR  197 (350)
Q Consensus       185 -------------------------------------------------------------------~~~~~v~~~~~~~  197 (350)
                                                                                         .+...+.+++|+|
T Consensus       379 ~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp  458 (611)
T 1nr0_A          379 GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN  458 (611)
T ss_dssp             SCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT
T ss_pred             CcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC
Confidence                                                                               0012356788999


Q ss_pred             CCcEEEEE-cCCcEEEEECCCcce--eeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEccc-CeeEEe--ecCCCc
Q 018784          198 DGRYITTA-DGSSVKFWDANHFGL--VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT-GEQIGC--NKGHHG  271 (350)
Q Consensus       198 ~~~~l~~~-~~~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~-~~~~~~--~~~h~~  271 (350)
                      ++++++++ .|+.|++||+.+...  ............+.+.| ++++|++++.|++|++||+.+ ++.+..  +.+|..
T Consensus       459 dg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fsp-dg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~  537 (611)
T 1nr0_A          459 DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA  537 (611)
T ss_dssp             TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSS
T ss_pred             CCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECC-CCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeeccc
Confidence            99988765 578999999876543  22222233345566665 689999999999999999988 665544  345999


Q ss_pred             CEEEEEEcCCCCEEEEecCCCcEEEecCCCCC
Q 018784          272 PVHCVRFSPGGESYASGSEDGTIRIWQTNPPN  303 (350)
Q Consensus       272 ~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~  303 (350)
                      .|++++|+|++++|||||.|++|+||++..+.
T Consensus       538 ~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~  569 (611)
T 1nr0_A          538 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPS  569 (611)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred             ceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence            99999999999999999999999999987543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.7e-43  Score=324.47  Aligned_cols=282  Identities=22%  Similarity=0.352  Sum_probs=233.9

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccC------------------CeEEEEECCCCc
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG------------------AVWSCCLDANAL   74 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~------------------~V~~v~~~~~~~   74 (350)
                      .+|..+|.+++|+|   ||++||+|+ |++++||+..+++.+..+.+|..                  .|++++|+|++.
T Consensus        61 ~~h~~~V~~v~fsp---dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~  136 (393)
T 1erj_A           61 LDHTSVVCCVKFSN---DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK  136 (393)
T ss_dssp             EECSSCCCEEEECT---TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred             cCCCCEEEEEEECC---CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC
Confidence            37999999999987   999999987 78999999999999888877653                  389999999999


Q ss_pred             EEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEE
Q 018784           75 FSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAW  153 (350)
Q Consensus        75 ~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~  153 (350)
                      ++++|+.|++|++||+.+++....+ .|...|.+++|+|++.+|++++.|++|++||+.++....  ...+...+.+++|
T Consensus       137 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~--~~~~~~~v~~~~~  214 (393)
T 1erj_A          137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL--TLSIEDGVTTVAV  214 (393)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--EEECSSCEEEEEE
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEE--EEEcCCCcEEEEE
Confidence            9999999999999999988877666 589999999999999999999999999999998654322  2235567999999


Q ss_pred             eCCCCcEEEEEeCCCeEEEEECCCCceeEeec--------CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcce----
Q 018784          154 LHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--------TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGL----  220 (350)
Q Consensus       154 ~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~----  220 (350)
                      ++.++.++++|+.|++|++||+++++.+..+.        +...+.+++|+|++++++++ .|+.|++||+++...    
T Consensus       215 ~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~  294 (393)
T 1erj_A          215 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS  294 (393)
T ss_dssp             CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------
T ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccc
Confidence            98788899999999999999999998877662        34679999999999887665 589999999976432    


Q ss_pred             --------eeeeecCCCC-ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcC------CCCEE
Q 018784          221 --------VKGYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSP------GGESY  285 (350)
Q Consensus       221 --------~~~~~~~~~~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp------~~~~l  285 (350)
                              ...+..+... ..+.+.+ ++.+|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|      ++++|
T Consensus       295 ~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l  373 (393)
T 1erj_A          295 KTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF  373 (393)
T ss_dssp             ------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEE
T ss_pred             cCCCCCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEE
Confidence                    2223223222 2334444 578999999999999999999999999999999999999986      67899


Q ss_pred             EEecCCCcEEEecCCC
Q 018784          286 ASGSEDGTIRIWQTNP  301 (350)
Q Consensus       286 asgs~Dg~v~vw~~~~  301 (350)
                      +|||.||+|+||++..
T Consensus       374 ~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          374 ATGSGDCKARIWKYKK  389 (393)
T ss_dssp             EEEETTSEEEEEEEEE
T ss_pred             EEECCCCcEEECcccc
Confidence            9999999999999753

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.3e-43  Score=317.01  Aligned_cols=291  Identities=22%  Similarity=0.334  Sum_probs=228.9

Q ss_pred             eEeeccCC-ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCcee---eeccCccCCeEEEEECCCCcEEEEeeCCCeE
Q 018784           10 LVCHGHSR-PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI---GTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (350)
Q Consensus        10 ~~~~gH~~-~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~---~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v   85 (350)
                      ..+.+|.+ +|++++|+|   +|++||+|+.|++|+||+..+++..   ....+|...|.+++|+|++.+|++|+.|++|
T Consensus         9 ~~~~~h~~~~v~~l~~sp---~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v   85 (345)
T 3fm0_A            9 GRVPAHPDSRCWFLAWNP---AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT   85 (345)
T ss_dssp             EEECCSTTSCEEEEEECT---TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             eeecCCCCCcEEEEEECC---CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence            34579998 999999987   9999999999999999999887643   2347899999999999999999999999999


Q ss_pred             EEeeCCCCC--eeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCC--CeeecCCCCcEEEEEEeCCCCcE
Q 018784           86 KLWDALTGD--EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP--PREVGNSSGSIRTVAWLHSDQTI  160 (350)
Q Consensus        86 ~vWd~~~~~--~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~  160 (350)
                      ++||..++.  ....+ .|...|.+++|+|++++|++|+.|++|++||+......  ......|...|.+++|++. +.+
T Consensus        86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~  164 (345)
T 3fm0_A           86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS-QEL  164 (345)
T ss_dssp             EEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS-SSC
T ss_pred             EEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC-CCE
Confidence            999987764  33444 58999999999999999999999999999999754322  2344578889999999864 567


Q ss_pred             EEEEeCCCeEEEEECCCCc--eeEeec-CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcc---------------ee
Q 018784          161 LSSCTDSGGVRLWDARSGK--IVQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFG---------------LV  221 (350)
Q Consensus       161 ~~s~~~dg~i~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~---------------~~  221 (350)
                      +++++.|++|++||+++++  +...+. +...|.+++|+|++++|+++ .|+.|++||.....               ++
T Consensus       165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~  244 (345)
T 3fm0_A          165 LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI  244 (345)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE
T ss_pred             EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee
Confidence            8889999999999998875  334555 45789999999999887664 68999999964321               11


Q ss_pred             eeeec-CC-CCceeEecCCCCcEEEEecCCCeEEEEEcccCee---------EEeecCCCcCEEEEEEcCCC-CEEEEec
Q 018784          222 KGYNM-PC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ---------IGCNKGHHGPVHCVRFSPGG-ESYASGS  289 (350)
Q Consensus       222 ~~~~~-~~-~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~---------~~~~~~h~~~v~~l~~sp~~-~~lasgs  289 (350)
                      ..+.. +. ....+.+.+ .+..|++++.|+.|++|+...+..         .....+|...|++++|+|++ .+|||||
T Consensus       245 ~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s  323 (345)
T 3fm0_A          245 CTLSGFHSRTIYDIAWCQ-LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS  323 (345)
T ss_dssp             EEECSSCSSCEEEEEECT-TTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred             EEecCCCCCcEEEEEEec-CCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence            11111 11 223444554 478899999999999999875431         22346899999999999997 4899999


Q ss_pred             CCCcEEEecCCCCCcc
Q 018784          290 EDGTIRIWQTNPPNHE  305 (350)
Q Consensus       290 ~Dg~v~vw~~~~~~~~  305 (350)
                      .||+|++|++...+..
T Consensus       324 ~Dg~v~~W~~~~~~~~  339 (345)
T 3fm0_A          324 DDGEVAFWKYQRPEGL  339 (345)
T ss_dssp             TTSCEEEEEECC----
T ss_pred             CCCcEEEEEecCCCCc
Confidence            9999999998766543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.6e-43  Score=312.41  Aligned_cols=288  Identities=19%  Similarity=0.264  Sum_probs=219.5

Q ss_pred             ccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC--ceeeec-cC-ccCCeEEEEECCCCcEEEEeeC
Q 018784            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG--DWIGTF-EG-HKGAVWSCCLDANALFSASGSA   81 (350)
Q Consensus         6 ~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~--~~~~~l-~g-H~~~V~~v~~~~~~~~l~s~s~   81 (350)
                      +..-..+.||+++|++++|+|   +  +||+|+.|++|+||++.++  +.+..+ .+ |.+.|++++|+|++.+|++|+.
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~---~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~   78 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQ---G--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF   78 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEET---T--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET
T ss_pred             cccceeeccCCCceeeeccCC---C--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC
Confidence            333445689999999999986   5  9999999999999999875  445556 45 9999999999999999999999


Q ss_pred             CCeEEEeeCCCC-------Ceeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCC---CeeecCCCCcEEE
Q 018784           82 DFTAKLWDALTG-------DEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP---PREVGNSSGSIRT  150 (350)
Q Consensus        82 Dg~v~vWd~~~~-------~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~---~~~~~~~~~~v~~  150 (350)
                      |++|++||....       +....+ .|...|.+++|+|++++|++|+.|++|++||+......   ......|...|.+
T Consensus        79 D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~  158 (330)
T 2hes_X           79 DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH  158 (330)
T ss_dssp             TSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEE
T ss_pred             CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEE
Confidence            999999998532       223333 58999999999999999999999999999999543221   2345678889999


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEECCCC--ceeEeecC-CCCeEEEEEecC--CcEEE-EEcCCcEEEEECCCc------
Q 018784          151 VAWLHSDQTILSSCTDSGGVRLWDARSG--KIVQTLET-KSPVTSAEVSRD--GRYIT-TADGSSVKFWDANHF------  218 (350)
Q Consensus       151 ~~~~~~~~~~~~s~~~dg~i~iwd~~~~--~~~~~~~~-~~~v~~~~~~~~--~~~l~-~~~~~~i~vwd~~~~------  218 (350)
                      ++|+| ++.++++|+.|++|++||++++  +++..+.. ...|.+++|+|+  +.+++ ++.|+.|++||++..      
T Consensus       159 v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~  237 (330)
T 2hes_X          159 VIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQ  237 (330)
T ss_dssp             EEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCE
T ss_pred             EEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccc
Confidence            99986 5668889999999999999776  56667764 568999999998  55554 567899999998654      


Q ss_pred             --ceeeeeec-C-CCCceeEecCCCCcEEEEecCCCeEEEEEcccCe--eEEe-ecCCCc-CEEEEEEcC--CCCEEEEe
Q 018784          219 --GLVKGYNM-P-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE--QIGC-NKGHHG-PVHCVRFSP--GGESYASG  288 (350)
Q Consensus       219 --~~~~~~~~-~-~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~--~~~~-~~~h~~-~v~~l~~sp--~~~~lasg  288 (350)
                        .+...+.. + .....+.+.+  +.+|++++.|+.|++||..+++  .+.. ..+|.. .|.+++|+|  ++++||||
T Consensus       238 ~~~~~~~~~~~h~~~v~~v~~s~--~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~  315 (330)
T 2hes_X          238 EWVCEAILPDVHKRQVYNVAWGF--NGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATG  315 (330)
T ss_dssp             EEEEEEECCSCCSSCEEEEEECT--TSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEE
T ss_pred             eeEEeeecccccccceEEEEEcC--CCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEe
Confidence              22222221 1 1233445553  4589999999999999998874  3333 467887 899999999  68899999


Q ss_pred             cCCCcEEEecCCC
Q 018784          289 SEDGTIRIWQTNP  301 (350)
Q Consensus       289 s~Dg~v~vw~~~~  301 (350)
                      |.||+|+||++..
T Consensus       316 s~Dg~v~~W~~~~  328 (330)
T 2hes_X          316 GDDGIVNFWSLEK  328 (330)
T ss_dssp             ETTSEEEEEEC--
T ss_pred             cCCCcEEEEEecc
Confidence            9999999999753

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-42  Score=310.30  Aligned_cols=294  Identities=27%  Similarity=0.478  Sum_probs=257.3

Q ss_pred             cccccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCC
Q 018784            3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD   82 (350)
Q Consensus         3 ~~~~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D   82 (350)
                      .+....+..++||.++|.+++|+|   +|++|++|+.|+.|++||..+++.+..+.+|...|.+++|++++.++++++.|
T Consensus        19 ~G~~~~~~~l~~h~~~v~~~~~s~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d   95 (369)
T 3zwl_B           19 QGSHMKAIKLTGHERPLTQVKYNK---EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSAD   95 (369)
T ss_dssp             SCCSEEEEEEECCSSCEEEEEECT---TSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eccccccEEEEEeeceEEEEEEcC---CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCC
Confidence            355667788899999999999987   99999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCC-----CeEEEEECCCCCCC----------CeeecCCCC-
Q 018784           83 FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE-----KILRIFDLNRPDAP----------PREVGNSSG-  146 (350)
Q Consensus        83 g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d-----~~v~vwd~~~~~~~----------~~~~~~~~~-  146 (350)
                      |.|++||+.+++....+.+...|.+++|+|++++|++++.+     +.|++||+......          ......+.+ 
T Consensus        96 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (369)
T 3zwl_B           96 YSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGL  175 (369)
T ss_dssp             TEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTC
T ss_pred             CeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCc
Confidence            99999999999998888899999999999999999999999     99999998755432          222233444 


Q ss_pred             -cEEEEEEeCCCCcEEEEEeCCCeEEEEECCC-CceeEeec-CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceee
Q 018784          147 -SIRTVAWLHSDQTILSSCTDSGGVRLWDARS-GKIVQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVK  222 (350)
Q Consensus       147 -~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~  222 (350)
                       .+.+++|.+ ++.++++++.|+.|++||+++ ++.+..+. +...+.+++|+|++++|+++ .++.|++||+++...+.
T Consensus       176 ~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~  254 (369)
T 3zwl_B          176 DAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLK  254 (369)
T ss_dssp             CCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             cceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceee
Confidence             789999886 555778889999999999998 67777776 45789999999999887655 68899999999998888


Q ss_pred             eeecCCCCceeEecCCCCcEEEEecCCC--------------eEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEe
Q 018784          223 GYNMPCNTESASLEPKLGNIFIAGGEDM--------------WVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASG  288 (350)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~sg~~d~--------------~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasg  288 (350)
                      .+........+.+.+ ++.++++++.++              .+++||+.+++.+..+.+|...|.+++|+|++++|++|
T Consensus       255 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  333 (369)
T 3zwl_B          255 KYETDCPLNTAVITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASG  333 (369)
T ss_dssp             EEECSSCEEEEEECS-SSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             eecCCCCceeEEecC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEE
Confidence            887655556666666 578888888887              89999999999999999999999999999999999999


Q ss_pred             cCCCcEEEecCCC
Q 018784          289 SEDGTIRIWQTNP  301 (350)
Q Consensus       289 s~Dg~v~vw~~~~  301 (350)
                      +.||.|++|++..
T Consensus       334 ~~dg~v~iw~~~~  346 (369)
T 3zwl_B          334 GEDGFIRLHHFEK  346 (369)
T ss_dssp             ETTSEEEEEEECH
T ss_pred             cCCCeEEEEECcc
Confidence            9999999999864

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.1e-42  Score=333.60  Aligned_cols=288  Identities=15%  Similarity=0.231  Sum_probs=241.3

Q ss_pred             eeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC--ceeeeccCccCCeEEEEECCCCcEEEEeeCC----
Q 018784            9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG--DWIGTFEGHKGAVWSCCLDANALFSASGSAD----   82 (350)
Q Consensus         9 ~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~--~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D----   82 (350)
                      ...+.||+++|++++|+|   ||++||+|+.|++|+|||..++  ....++.+|.+.|.+++|+|+++++++++.+    
T Consensus        52 ~~~~~~h~~~v~~~~~sp---dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~  128 (611)
T 1nr0_A           52 TEIYTEHSHQTTVAKTSP---SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF  128 (611)
T ss_dssp             CEEECCCSSCEEEEEECT---TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCS
T ss_pred             CeEecCCCCceEEEEECC---CCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCce
Confidence            344689999999999987   9999999999999999998754  3456889999999999999999999998876    


Q ss_pred             CeEEEeeCCCCCeeeee-eccccEeEEEEcCCCC-eEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcE
Q 018784           83 FTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (350)
Q Consensus        83 g~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~-~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  160 (350)
                      +.|++||.  +.....+ .|...|.+++|+|++. .|++|+.|++|++||...... ......|...|.+++|+| ++.+
T Consensus       129 ~~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~-~~~l~~H~~~V~~v~fsp-dg~~  204 (611)
T 1nr0_A          129 GHVFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF-KSTFGEHTKFVHSVRYNP-DGSL  204 (611)
T ss_dssp             EEEEETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-EEEECCCSSCEEEEEECT-TSSE
T ss_pred             eEEEEeeC--CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeE-eeeeccccCceEEEEECC-CCCE
Confidence            58999995  3333333 6899999999999987 599999999999999865432 234567889999999986 5678


Q ss_pred             EEEEeCCCeEEEEECCCCceeEeec--------CCCCeEEEEEecCCcEEEE-EcCCcEEEEECCCcceeeeeecCCCC-
Q 018784          161 LSSCTDSGGVRLWDARSGKIVQTLE--------TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNT-  230 (350)
Q Consensus       161 ~~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~~~~~~~~~~~~-  230 (350)
                      +++++.|++|++||+++++.+..+.        +...|.+++|+|++++|++ +.|++|++||+++.+++..+...... 
T Consensus       205 las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~  284 (611)
T 1nr0_A          205 FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE  284 (611)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGG
T ss_pred             EEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCcc
Confidence            8899999999999999998887773        5578999999999988765 46899999999998887776543221 


Q ss_pred             -ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCc
Q 018784          231 -ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNH  304 (350)
Q Consensus       231 -~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~  304 (350)
                       ....+.. .++.+++++.|+.|++||..+++....+.+|...|++++|+|++++|++++.|++|++||+.....
T Consensus       285 ~~~~~~~~-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~  358 (611)
T 1nr0_A          285 DQQLGIIW-TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS  358 (611)
T ss_dssp             GCEEEEEE-CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred             ceeEEEEE-cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Confidence             1111111 468899999999999999999988888999999999999999999999999999999999976544

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=5.1e-42  Score=336.86  Aligned_cols=286  Identities=20%  Similarity=0.274  Sum_probs=236.7

Q ss_pred             EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC-----ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeE
Q 018784           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-----DWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~-----~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v   85 (350)
                      +++||++.|++++|+|  .++.+|+|||.|++|+||++.+.     .....+.+|...|.+++|++++.+++||+.||+|
T Consensus       377 ~l~~H~~~V~~v~~~~--~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v  454 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPI--DNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL  454 (694)
T ss_dssp             EEECCSSCEEEEECCT--TCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             hcccCCceeEEEEecC--CCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence            4689999999999987  24579999999999999998653     4456889999999999999999999999999999


Q ss_pred             EEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC--eeecCCCCcEEEEEEeCCC-CcEE
Q 018784           86 KLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--REVGNSSGSIRTVAWLHSD-QTIL  161 (350)
Q Consensus        86 ~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~-~~~~  161 (350)
                      +|||+.++.....+ .|...|.+++|+|++.+|++|+.|++|++||+.......  .....|...|.+++|++.. ...+
T Consensus       455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l  534 (694)
T 3dm0_A          455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI  534 (694)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred             EEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence            99999988876665 699999999999999999999999999999975321111  1113577789999998765 4688


Q ss_pred             EEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCCceeEecCCC
Q 018784          162 SSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKL  239 (350)
Q Consensus       162 ~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  239 (350)
                      ++++.|++|++||++++++...+.. ...|.+++|+|++++++++ .|+.|++||+++.+.+..+........+.+.+ +
T Consensus       535 ~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp-~  613 (694)
T 3dm0_A          535 VSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSP-N  613 (694)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECS-S
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcC-C
Confidence            9999999999999999998888875 4689999999999988765 68999999999988877666555555666665 3


Q ss_pred             CcEEEEecCCCeEEEEEcccCeeEEeecCCC-------------------cCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          240 GNIFIAGGEDMWVHVFDFHTGEQIGCNKGHH-------------------GPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       240 ~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~-------------------~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      +.++++ +.|+.|++||+.++..+..+..+.                   ..+++++|+|++++|+||+.||.|+||++.
T Consensus       614 ~~~l~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          614 RYWLCA-ATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             SSEEEE-EETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CcEEEE-EcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            555555 456779999999998877654321                   237899999999999999999999999974

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.3e-41  Score=311.21  Aligned_cols=288  Identities=17%  Similarity=0.150  Sum_probs=244.6

Q ss_pred             ccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc------eeeeccCccCCeEEEEECCC----C--
Q 018784            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD------WIGTFEGHKGAVWSCCLDAN----A--   73 (350)
Q Consensus         6 ~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~------~~~~l~gH~~~V~~v~~~~~----~--   73 (350)
                      +....++++|.++|++++|+|     .+|++|+.|++|+||+..+++      .+..+.+|...|.+++|+++    +  
T Consensus         6 ~~~~~~~~~h~~~i~~~~~~~-----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~   80 (397)
T 1sq9_A            6 IATANAGKAHDADIFSVSACN-----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFE   80 (397)
T ss_dssp             EEEEEESSCSSSCEEEEEECS-----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEE
T ss_pred             hhhhhhhhhhhcCeEEEEecC-----CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcc
Confidence            344555689999999999986     599999999999999999888      78889999999999999999    9  


Q ss_pred             -cEEEEeeCCCeEEEeeCCCCCe-----eeee-ec-----cccEeEEEEc----CCCCe-EEEeeCCCeEEEEECCC---
Q 018784           74 -LFSASGSADFTAKLWDALTGDE-----KHSF-EH-----KHIVRACAFS----EDTHL-LLTGGFEKILRIFDLNR---  133 (350)
Q Consensus        74 -~~l~s~s~Dg~v~vWd~~~~~~-----~~~~-~h-----~~~V~~~~~~----~~~~~-l~sg~~d~~v~vwd~~~---  133 (350)
                       .++++++.||.|++||+.++..     ...+ .|     ...|.+++|+    |++.+ |++++.|+.|++||+..   
T Consensus        81 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  160 (397)
T 1sq9_A           81 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD  160 (397)
T ss_dssp             EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred             ccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence             9999999999999999988775     4444 46     4889999999    99999 99999999999999986   


Q ss_pred             ---CCCCC-----eee------cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-------CCCeEE
Q 018784          134 ---PDAPP-----REV------GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-------KSPVTS  192 (350)
Q Consensus       134 ---~~~~~-----~~~------~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~v~~  192 (350)
                         .....     ...      ..+...+.+++|.+.+  ++++++.|+.|++||+++++.+..+..       ..++.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~  238 (397)
T 1sq9_A          161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS  238 (397)
T ss_dssp             HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred             ccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccce
Confidence               44333     221      3467889999998755  888999999999999999999888876       778999


Q ss_pred             EEEecCCcEEEEE-cC---CcEEEEECCCcceeeeeec-------------CCC-CceeEecCCCCcEEEEecCCCeEEE
Q 018784          193 AEVSRDGRYITTA-DG---SSVKFWDANHFGLVKGYNM-------------PCN-TESASLEPKLGNIFIAGGEDMWVHV  254 (350)
Q Consensus       193 ~~~~~~~~~l~~~-~~---~~i~vwd~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~l~sg~~d~~i~v  254 (350)
                      ++|+|++++|+++ .+   +.|++||+++...+..+..             +.. ...+.+.+ ++++|++++.|+.|++
T Consensus       239 i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i  317 (397)
T 1sq9_A          239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRF  317 (397)
T ss_dssp             EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEE
T ss_pred             EEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEE
Confidence            9999999988765 46   7999999999888777765             333 33455555 5889999999999999


Q ss_pred             EEcccCeeEEeec------CC---------------CcCEEEEEEcCCC----------CEEEEecCCCcEEEecCCC
Q 018784          255 FDFHTGEQIGCNK------GH---------------HGPVHCVRFSPGG----------ESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       255 ~d~~~~~~~~~~~------~h---------------~~~v~~l~~sp~~----------~~lasgs~Dg~v~vw~~~~  301 (350)
                      ||+.+++.+..+.      +|               ...|++++|+|++          ++|++|+.||.|++|++..
T Consensus       318 wd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          318 WDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             EETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             EEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence            9999999999888      88               9999999999998          7999999999999999754

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.3e-41  Score=303.60  Aligned_cols=297  Identities=17%  Similarity=0.236  Sum_probs=238.2

Q ss_pred             ccccceeEeeccCCceeEEEecccCCCc-cEEEEEeC---CCCeeEeeCCCCceeeec-cCccCCeEEEEECCC---CcE
Q 018784            4 RKVAVPLVCHGHSRPVVDLFYSPITPDG-FFLVSASK---DSSPMLRNGETGDWIGTF-EGHKGAVWSCCLDAN---ALF   75 (350)
Q Consensus         4 ~~~~~~~~~~gH~~~v~~~~~~~~s~dg-~~lasgs~---d~~v~iw~~~~~~~~~~l-~gH~~~V~~v~~~~~---~~~   75 (350)
                      ++.-+..++++|.++|.+++|+|   ++ .++++|+.   |++|+||+..+++..... .+|...|.+++|+++   +.+
T Consensus         6 ~~~~~~~~~~~h~~~v~~~~~~p---~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   82 (357)
T 3i2n_A            6 KPQIIAHIQKGFNYTVFDCKWVP---CSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRY   82 (357)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECT---TSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCC
T ss_pred             hhHHhhhhccCCCCceEEEEEcC---CCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCce
Confidence            33444555689999999999997   77 56677776   999999999998876543 379999999999998   699


Q ss_pred             EEEeeCCCeEEEeeCCCCC-eeeee-eccccEeEEE------EcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCC--
Q 018784           76 SASGSADFTAKLWDALTGD-EKHSF-EHKHIVRACA------FSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS--  145 (350)
Q Consensus        76 l~s~s~Dg~v~vWd~~~~~-~~~~~-~h~~~V~~~~------~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~--  145 (350)
                      +++++.||.|++||+.+++ ....+ .|...|.+++      |+|++++|++++.|+.|++||+............+.  
T Consensus        83 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~  162 (357)
T 3i2n_A           83 LATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE  162 (357)
T ss_dssp             EEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTS
T ss_pred             EEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCC
Confidence            9999999999999998877 55555 5889999995      578999999999999999999987664444444333  


Q ss_pred             --CcEEEEEEe---CCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEec---CCcEEEE-EcCCcEEEEECC
Q 018784          146 --GSIRTVAWL---HSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSR---DGRYITT-ADGSSVKFWDAN  216 (350)
Q Consensus       146 --~~v~~~~~~---~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~-~~~~~i~vwd~~  216 (350)
                        ..+.+++|.   .+++.++++++.|+.|++||+++++......+...+.+++|+|   ++.++++ +.++.|++||++
T Consensus       163 ~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~  242 (357)
T 3i2n_A          163 NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR  242 (357)
T ss_dssp             CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred             CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence              378888863   3677889999999999999999999887777888999999999   7777655 568999999998


Q ss_pred             Ccceeeeee-----cCC-CCceeEecCCCCcEEEEecCCCeEEEEEcccC-------------------eeEEeecCCCc
Q 018784          217 HFGLVKGYN-----MPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTG-------------------EQIGCNKGHHG  271 (350)
Q Consensus       217 ~~~~~~~~~-----~~~-~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~-------------------~~~~~~~~h~~  271 (350)
                      +......+.     .+. ....+.+.+....+|++|+.|+.|++||+.++                   +.+..+.+|..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  322 (357)
T 3i2n_A          243 TQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ  322 (357)
T ss_dssp             EEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS
T ss_pred             CCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC
Confidence            766554443     222 33455666643348999999999999999854                   35667889999


Q ss_pred             CEEEEEEcCCCCEEE-EecCCCcEEEecCCCCC
Q 018784          272 PVHCVRFSPGGESYA-SGSEDGTIRIWQTNPPN  303 (350)
Q Consensus       272 ~v~~l~~sp~~~~la-sgs~Dg~v~vw~~~~~~  303 (350)
                      +|++++|+|++++|+ +|+.|+.|++|++...+
T Consensus       323 ~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          323 PISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             CEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             CeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            999999999999998 89999999999986543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.8e-40  Score=318.45  Aligned_cols=303  Identities=28%  Similarity=0.469  Sum_probs=251.5

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      +.+|..+|.+++|+|   ++.+|++++.|+++++|+. +++.+..+.+|...|++++++|++.++++++.|++|++||..
T Consensus       258 ~~~~~~~v~~v~~~~---d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~  333 (577)
T 2ymu_A          258 LTGHSSSVNGVAFRP---DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN  333 (577)
T ss_dssp             ECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EecCCCCEEEEEEcC---CCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            479999999999986   9999999999999999995 567888999999999999999999999999999999999987


Q ss_pred             CCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEE
Q 018784           92 TGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (350)
Q Consensus        92 ~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~  171 (350)
                      .........|...|.+++|+|++++|++++.|+.|++||...  ........|...|.+++|++ ++.++++++.|++|+
T Consensus       334 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~--~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~  410 (577)
T 2ymu_A          334 GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVK  410 (577)
T ss_dssp             SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC--CEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEE
T ss_pred             CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC--CEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEE
Confidence            655544456889999999999999999999999999999642  23344567888999999986 556777889999999


Q ss_pred             EEECCCCceeEeec-CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCC-ceeEecCCCCcEEEEecC
Q 018784          172 LWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIAGGE  248 (350)
Q Consensus       172 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~sg~~  248 (350)
                      +||. +++.+..+. +...+.+++|+|++++++++ .|+.|++||.. .+.+..+..+... ..+.+.| ++++|++++.
T Consensus       411 ~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~sp-d~~~las~~~  487 (577)
T 2ymu_A          411 LWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSP-DGQTIASASD  487 (577)
T ss_dssp             EECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECT-TSCEEEEEET
T ss_pred             EEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcC-CCCEEEEEeC
Confidence            9995 566666665 45789999999999888654 68899999964 4555555544433 3445555 6899999999


Q ss_pred             CCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCCCCcccccccccccccee
Q 018784          249 DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTR  328 (350)
Q Consensus       249 d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (350)
                      |+.|++||. +++.+..+.+|...|++++|+|++++||+++.|+.|+|||+. .+               +......+..
T Consensus       488 d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~~---------------~~~~~~~h~~  550 (577)
T 2ymu_A          488 DKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ---------------LLQTLTGHSS  550 (577)
T ss_dssp             TSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SC---------------EEEEEECCSS
T ss_pred             CCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-CC---------------EEEEEcCCCC
Confidence            999999995 688888999999999999999999999999999999999852 11               2223345667


Q ss_pred             eeeeEEEcccchh
Q 018784          329 KIEGFHINKEGKA  341 (350)
Q Consensus       329 ~i~~~~~~~~g~~  341 (350)
                      .|.++.++|||+.
T Consensus       551 ~v~~~~fs~dg~~  563 (577)
T 2ymu_A          551 SVWGVAFSPDGQT  563 (577)
T ss_dssp             CEEEEEECTTSSC
T ss_pred             CEEEEEEcCCCCE
Confidence            7888999999874

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5e-41  Score=306.48  Aligned_cols=283  Identities=16%  Similarity=0.190  Sum_probs=232.6

Q ss_pred             EeeccCCceeEEEecccCCCc-cEEEEEeCCCCeeEeeCCCCceeeecc--CccCCeEEEEECC-CCcEEEEeeCCCeEE
Q 018784           11 VCHGHSRPVVDLFYSPITPDG-FFLVSASKDSSPMLRNGETGDWIGTFE--GHKGAVWSCCLDA-NALFSASGSADFTAK   86 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg-~~lasgs~d~~v~iw~~~~~~~~~~l~--gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~   86 (350)
                      .+.+|..+|.+++|+|   ++ .+||+|+.|++|+|||..+++....+.  +|...|.+++|+| ++.++++++.|+.|+
T Consensus        68 ~~~~h~~~v~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~  144 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHP---THPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATT  144 (383)
T ss_dssp             EECCCSSCEEEEEECS---SCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEE
T ss_pred             eccCCCCCEEEEEECC---CCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEE
Confidence            3579999999999997   77 899999999999999999888777665  7999999999999 789999999999999


Q ss_pred             EeeCCCCCeeeeee---ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEE
Q 018784           87 LWDALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (350)
Q Consensus        87 vWd~~~~~~~~~~~---h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s  163 (350)
                      +||+.+........   |...|.+++|+|++++|++|+.|+.|++||+.  .........|...|.+++|++.+..++++
T Consensus       145 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  222 (383)
T 3ei3_B          145 LRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GHEIFKEKLHKAKVTHAEFNPRCDWLMAT  222 (383)
T ss_dssp             EEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SCEEEEEECSSSCEEEEEECSSCTTEEEE
T ss_pred             EEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CCEEEEeccCCCcEEEEEECCCCCCEEEE
Confidence            99998643333322   34779999999999999999999999999994  23344556788999999999876668999


Q ss_pred             EeCCCeEEEEECCC----CceeEeecCCCCeEEEEEec-CCcEEEEE-cCCcEEEEECCCcceeeeeecCC-------CC
Q 018784          164 CTDSGGVRLWDARS----GKIVQTLETKSPVTSAEVSR-DGRYITTA-DGSSVKFWDANHFGLVKGYNMPC-------NT  230 (350)
Q Consensus       164 ~~~dg~i~iwd~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~-------~~  230 (350)
                      |+.|++|++||+++    ++++..+.+...+.+++|+| ++++++++ .++.|++||+++...+..+..+.       ..
T Consensus       223 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  302 (383)
T 3ei3_B          223 SSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTP  302 (383)
T ss_dssp             EETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCC
T ss_pred             EeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccc
Confidence            99999999999998    66777777888999999999 99887655 58999999999877655544221       11


Q ss_pred             ceeEecC----------CCCcEEEEecCCCeEEEEEcccCeeEEeecC--CCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          231 ESASLEP----------KLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG--HHGPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       231 ~~~~~~~----------~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~--h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      ....+.+          +++++  +|+.|+.|++||+.+++.+..+.+  |...+..++|+|++++|++|+ |+.|++|+
T Consensus       303 ~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~  379 (383)
T 3ei3_B          303 IKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWN  379 (383)
T ss_dssp             CCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred             eEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEe
Confidence            1112222          23344  778999999999999999998887  457788889999999999997 99999999


Q ss_pred             CCC
Q 018784          299 TNP  301 (350)
Q Consensus       299 ~~~  301 (350)
                      +..
T Consensus       380 ~~~  382 (383)
T 3ei3_B          380 RED  382 (383)
T ss_dssp             CC-
T ss_pred             cCC
Confidence            863

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-41  Score=313.02  Aligned_cols=287  Identities=20%  Similarity=0.241  Sum_probs=239.8

Q ss_pred             cCCceeEEEecccCCCcc-EEEEE----------eCCCCeeEeeCCCCc---eeeeccCccCCeEEEEECCCCcEEEEee
Q 018784           15 HSRPVVDLFYSPITPDGF-FLVSA----------SKDSSPMLRNGETGD---WIGTFEGHKGAVWSCCLDANALFSASGS   80 (350)
Q Consensus        15 H~~~v~~~~~~~~s~dg~-~lasg----------s~d~~v~iw~~~~~~---~~~~l~gH~~~V~~v~~~~~~~~l~s~s   80 (350)
                      +..+|.+++|+|   +|. +|++|          +.|++|+||+..+++   ++..+ .|...|.+++|++++.+|++++
T Consensus        11 ~~~~v~~~~~sp---~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~   86 (416)
T 2pm9_A           11 EFSRTATFAWSH---DKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGAL   86 (416)
T ss_dssp             EEEESCBCCBCS---SSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEE
T ss_pred             hhhhcceEeeCC---CCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEc
Confidence            345788898886   886 99999          899999999998875   34344 5899999999999999999999


Q ss_pred             CCCeEEEeeCCC----CCeeeee-eccccEeEEEEcCC-CCeEEEeeCCCeEEEEECCCCC------CCCe--eecCCCC
Q 018784           81 ADFTAKLWDALT----GDEKHSF-EHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPD------APPR--EVGNSSG  146 (350)
Q Consensus        81 ~Dg~v~vWd~~~----~~~~~~~-~h~~~V~~~~~~~~-~~~l~sg~~d~~v~vwd~~~~~------~~~~--~~~~~~~  146 (350)
                      .||.|++||+.+    ......+ .|...|.+++|+|+ +.+|++++.|+.|++||+.+..      ....  ....|..
T Consensus        87 ~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  166 (416)
T 2pm9_A           87 DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD  166 (416)
T ss_dssp             SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSC
T ss_pred             cCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCC
Confidence            999999999987    2344444 58999999999998 8999999999999999998765      2221  2345778


Q ss_pred             cEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-------CCCeEEEEEecCC-cEEEE-EcCC---cEEEEE
Q 018784          147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-------KSPVTSAEVSRDG-RYITT-ADGS---SVKFWD  214 (350)
Q Consensus       147 ~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~-~~l~~-~~~~---~i~vwd  214 (350)
                      .+.+++|++.++.++++++.|++|++||+++++.+..+..       ...+.+++|+|++ .++++ +.++   .|++||
T Consensus       167 ~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d  246 (416)
T 2pm9_A          167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWD  246 (416)
T ss_dssp             CCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEE
T ss_pred             CeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEe
Confidence            8999999987688999999999999999999998888875       5679999999997 45554 4566   999999


Q ss_pred             CCCc-ceeeeee-cC-CCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCC-CEEEEecC
Q 018784          215 ANHF-GLVKGYN-MP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGG-ESYASGSE  290 (350)
Q Consensus       215 ~~~~-~~~~~~~-~~-~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~-~~lasgs~  290 (350)
                      +++. ..+..+. .+ .....+.+.+.++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++ .+|++++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~  326 (416)
T 2pm9_A          247 LRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASF  326 (416)
T ss_dssp             TTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCS
T ss_pred             CCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEec
Confidence            9986 4455444 22 2345566777678999999999999999999999999999999999999999998 89999999


Q ss_pred             CCcEEEecCCCCCcc
Q 018784          291 DGTIRIWQTNPPNHE  305 (350)
Q Consensus       291 Dg~v~vw~~~~~~~~  305 (350)
                      |+.|++|++......
T Consensus       327 d~~i~iw~~~~~~~~  341 (416)
T 2pm9_A          327 DNKIEVQTLQNLTNT  341 (416)
T ss_dssp             SSEEEEEESCCCCCS
T ss_pred             CCcEEEEEccCCCCC
Confidence            999999999765543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=9e-41  Score=295.82  Aligned_cols=252  Identities=21%  Similarity=0.283  Sum_probs=211.4

Q ss_pred             ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEE
Q 018784           52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFD  130 (350)
Q Consensus        52 ~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd  130 (350)
                      +..++|.+|.+.|.+++|+|++.++++++.||+|++||+.++.....+. |...|.+++|+|++++|++|+.|++|++||
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence            4567899999999999999999999999999999999999988777764 788999999999999999999999999999


Q ss_pred             CCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCc-eeEeec-CCCCeEEEEEec-CCcEEE-EEc
Q 018784          131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK-IVQTLE-TKSPVTSAEVSR-DGRYIT-TAD  206 (350)
Q Consensus       131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~-~~~~~~-~~~~v~~~~~~~-~~~~l~-~~~  206 (350)
                      +.+++. ......|...|.+++|.+ ++.++++|+.|++|++||++++. ....+. +...|.+++|+| ++.+++ ++.
T Consensus        84 ~~~~~~-~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~  161 (304)
T 2ynn_A           84 YNTGEK-VVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (304)
T ss_dssp             TTTCCE-EEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred             CCCCcE-EEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence            987654 344567889999999986 55678899999999999998874 444555 456899999999 566555 557


Q ss_pred             CCcEEEEECCCcceeeeeecCC--CCceeEecC-CCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCC
Q 018784          207 GSSVKFWDANHFGLVKGYNMPC--NTESASLEP-KLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGE  283 (350)
Q Consensus       207 ~~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~  283 (350)
                      |+.|++||+++......+....  ......+.+ .++.+|++|+.|+.|++||+++++++..+.+|...|.+++|+|+++
T Consensus       162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~  241 (304)
T 2ynn_A          162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP  241 (304)
T ss_dssp             TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred             CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCC
Confidence            8999999998776554443322  223344444 3568999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCcEEEecCCCCCcc
Q 018784          284 SYASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       284 ~lasgs~Dg~v~vw~~~~~~~~  305 (350)
                      +|+||+.||+|++||+...+..
T Consensus       242 ~l~s~s~Dg~i~iWd~~~~~~~  263 (304)
T 2ynn_A          242 IIISGSEDGTLKIWNSSTYKVE  263 (304)
T ss_dssp             EEEEEETTSCEEEEETTTCCEE
T ss_pred             EEEEEcCCCeEEEEECCCCcee
Confidence            9999999999999998765543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.8e-40  Score=317.10  Aligned_cols=275  Identities=30%  Similarity=0.518  Sum_probs=234.2

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      +.||..+|.+++|+|   ++.+|++++.|+++++|+.. ++.+..+.+|...|.+++++|++.++++++.||.|++||..
T Consensus       299 ~~~h~~~v~~~~~~~---~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~  374 (577)
T 2ymu_A          299 LTGHSSSVWGVAFSP---DGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN  374 (577)
T ss_dssp             ECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EecCCCCeEEEEECC---CCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC
Confidence            479999999999986   99999999999999999975 45567889999999999999999999999999999999964


Q ss_pred             CCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784           92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (350)
Q Consensus        92 ~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i  170 (350)
                       ++....+ .|...|.+++|+|++++|++++.|+.|++||...  ........|...+.+++|++ ++.++++++.|++|
T Consensus       375 -~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~--~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v  450 (577)
T 2ymu_A          375 -GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTV  450 (577)
T ss_dssp             -CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC--CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEE
T ss_pred             -CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC--CEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEE
Confidence             4444444 5889999999999999999999999999999642  23345567888999999986 55678889999999


Q ss_pred             EEEECCCCceeEeec-CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCC-ceeEecCCCCcEEEEec
Q 018784          171 RLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIAGG  247 (350)
Q Consensus       171 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~sg~  247 (350)
                      ++||. +++.+..+. +..++.+++|+|++++|+++ .|+.|++||. +.++++.+..+... ..+.+.| ++++|++++
T Consensus       451 ~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~  527 (577)
T 2ymu_A          451 KLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASAS  527 (577)
T ss_dssp             EEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECT-TSSCEEEEE
T ss_pred             EEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcC-CCCEEEEEE
Confidence            99996 455556655 46789999999999988765 6889999995 55666666655444 3445555 689999999


Q ss_pred             CCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          248 EDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       248 ~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      .|+.|++||. +++.+..+.+|.+.|++++|+||+++|+|++.|++|++||
T Consensus       528 ~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          528 DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             TTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            9999999995 6888899999999999999999999999999999999997

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.3e-41  Score=314.46  Aligned_cols=286  Identities=19%  Similarity=0.197  Sum_probs=223.8

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCce--eeeccCccCCeEEEEECC-CCcEEEEeeCCCeEEEe
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLW   88 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~--~~~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vW   88 (350)
                      ..+|...|++|+|+|.  ++.+||+|+.||+|+|||+.+++.  ...+.+|.+.|++++|+| ++.+|+|+|.||+|++|
T Consensus       115 ~~~~~~~V~~l~~~P~--~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw  192 (435)
T 4e54_B          115 AAPFDRRATSLAWHPT--HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ  192 (435)
T ss_dssp             EEECSSCEEEEEECSS--CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred             CCCCCCCEEEEEEeCC--CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence            4689999999999983  456999999999999999877654  456779999999999997 68999999999999999


Q ss_pred             eCCCCCeeeeee---ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe
Q 018784           89 DALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (350)
Q Consensus        89 d~~~~~~~~~~~---h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~  165 (350)
                      |+.++.......   +...+.+++|+|++.+|++|+.|+.|++||+...  .......|...|.+++|.+.+..++++|+
T Consensus       193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~~~~~s~s  270 (435)
T 4e54_B          193 DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLATAS  270 (435)
T ss_dssp             ETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCSSEEEEEE
T ss_pred             eccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCceEEEEec
Confidence            997665443332   2345789999999999999999999999998643  23345678889999999988888999999


Q ss_pred             CCCeEEEEECCCCceeEee----cCCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCC-------Ccee
Q 018784          166 DSGGVRLWDARSGKIVQTL----ETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-------TESA  233 (350)
Q Consensus       166 ~dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~-------~~~~  233 (350)
                      .|++|++||+++.+....+    .+..+|++++|+|++++|+++ .|+.|++||++++.....+..+..       ....
T Consensus       271 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (435)
T 4e54_B          271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA  350 (435)
T ss_dssp             TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBC
T ss_pred             CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEE
Confidence            9999999999887644333    345789999999999887654 689999999998776554432211       1122


Q ss_pred             EecCCCCcEEEEe------------cCCCeEEEEEcccCeeEEeec-CCCcCEEEE-EEcCCCCEEEEecCCCcEEEecC
Q 018784          234 SLEPKLGNIFIAG------------GEDMWVHVFDFHTGEQIGCNK-GHHGPVHCV-RFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       234 ~~~~~~~~~l~sg------------~~d~~i~v~d~~~~~~~~~~~-~h~~~v~~l-~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                      .+.+. +.+++++            ..++.|++||..+++.+..+. +|...|.++ +|+|+|.+|++|+ |+.|+||++
T Consensus       351 ~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~  428 (435)
T 4e54_B          351 AWHPR-YNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQ  428 (435)
T ss_dssp             EECSS-SSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCC
T ss_pred             EEcCC-CCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEEC
Confidence            23332 3333333            245679999999999888764 688889887 6999999999887 889999998


Q ss_pred             CCCC
Q 018784          300 NPPN  303 (350)
Q Consensus       300 ~~~~  303 (350)
                      ...+
T Consensus       429 ~~gk  432 (435)
T 4e54_B          429 QEAR  432 (435)
T ss_dssp             C---
T ss_pred             CcCe
Confidence            6554

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6e-40  Score=290.00  Aligned_cols=284  Identities=17%  Similarity=0.248  Sum_probs=240.4

Q ss_pred             cceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEE
Q 018784            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (350)
Q Consensus         7 ~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~   86 (350)
                      .....++||.++|.+++| |   ++.+|++|+.|++|++||..+++....+.+|...|.+++|++++.++++++.||.|+
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~---~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~   84 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-V---DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMIN   84 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-E---ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             HHHHHhhCCCCCcEEEEe-c---CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEE
Confidence            344557899999999999 5   888999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeCCCCC---eeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEE
Q 018784           87 LWDALTGD---EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS  162 (350)
Q Consensus        87 vWd~~~~~---~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  162 (350)
                      +|++....   ....+ .|...|.++.|  ++.+|++++.|+.|++||.   .........|...+.++.|.+.++..++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~  159 (313)
T 3odt_A           85 GVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE---GSLVYNLQAHNASVWDAKVVSFSENKFL  159 (313)
T ss_dssp             EEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET---TEEEEEEECCSSCEEEEEEEETTTTEEE
T ss_pred             EEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC---CcEEEecccCCCceeEEEEccCCCCEEE
Confidence            99986543   33333 58899999999  5779999999999999992   2233445668889999999987888899


Q ss_pred             EEeCCCeEEEEECCCCceeEeec--CCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCC-ceeEecCCC
Q 018784          163 SCTDSGGVRLWDARSGKIVQTLE--TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKL  239 (350)
Q Consensus       163 s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~  239 (350)
                      +++.|+.|++||..  +....+.  +...+.+++++|++.+++++.++.|++||+++...+..+..+... ..+.+.+. 
T Consensus       160 ~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-  236 (313)
T 3odt_A          160 TASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPN-  236 (313)
T ss_dssp             EEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT-
T ss_pred             EEECCCCEEEEecC--ceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecC-
Confidence            99999999999944  4444444  567899999999999777888999999999998888877655443 44556653 


Q ss_pred             CcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCc
Q 018784          240 GNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNH  304 (350)
Q Consensus       240 ~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~  304 (350)
                      + .+++++.|+.|++||+.+++.+..+..|...|.+++|+|+++ +++++.||.|++|++...+.
T Consensus       237 ~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~  299 (313)
T 3odt_A          237 G-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW  299 (313)
T ss_dssp             S-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred             C-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence            4 689999999999999999999999999999999999999998 66799999999999875443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=3.7e-40  Score=290.90  Aligned_cols=249  Identities=16%  Similarity=0.243  Sum_probs=199.3

Q ss_pred             EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC--CceeeeccCccCCeEEEEECC--CCcEEEEeeCCCeEE
Q 018784           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--GDWIGTFEGHKGAVWSCCLDA--NALFSASGSADFTAK   86 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~--~~~~~~l~gH~~~V~~v~~~~--~~~~l~s~s~Dg~v~   86 (350)
                      ++.||.++|++++|+|   +|++||+|+.|++|+||+...  ++++.+|.+|.+.|++++|++  ++.+|+||+.|++|+
T Consensus         4 ~~~~h~~~V~~~~~s~---~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~   80 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDY---YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM   80 (297)
T ss_dssp             ECCSCSSCEEEEEECT---TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred             eccCCcCceEEEEECC---CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence            4689999999999986   999999999999999999864  467889999999999999976  389999999999999


Q ss_pred             EeeCCCCC--eeeee-eccccEeEEEEcCC--CCeEEEeeCCCeEEEEECCCCCC-CCeeecCCCCcEEEEEEeCCC---
Q 018784           87 LWDALTGD--EKHSF-EHKHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDA-PPREVGNSSGSIRTVAWLHSD---  157 (350)
Q Consensus        87 vWd~~~~~--~~~~~-~h~~~V~~~~~~~~--~~~l~sg~~d~~v~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~---  157 (350)
                      +||+.++.  ....+ .|...|.+++|+|+  +.+|++++.|++|++||+..... .......|...+.+++|++..   
T Consensus        81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  160 (297)
T 2pm7_B           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (297)
T ss_dssp             EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred             EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence            99998764  33333 48889999999997  88999999999999999976532 234456788899999998752   


Q ss_pred             ---------CcEEEEEeCCCeEEEEECCCCc----eeEeecC-CCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeee
Q 018784          158 ---------QTILSSCTDSGGVRLWDARSGK----IVQTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKG  223 (350)
Q Consensus       158 ---------~~~~~s~~~dg~i~iwd~~~~~----~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~  223 (350)
                               +.++++|+.|++|++||+++++    ....+.. ...|.+++|+|++.                       
T Consensus       161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~-----------------------  217 (297)
T 2pm7_B          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL-----------------------  217 (297)
T ss_dssp             ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS-----------------------
T ss_pred             cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC-----------------------
Confidence                     4689999999999999998765    4445553 45788888888630                       


Q ss_pred             eecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCe---eEEee--cCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          224 YNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE---QIGCN--KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~---~~~~~--~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                                     .+.+|++|+.|++|++||+.++.   ....+  ..|...|++++|+|++++||+++.|+.|+||+
T Consensus       218 ---------------~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~  282 (297)
T 2pm7_B          218 ---------------LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (297)
T ss_dssp             ---------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred             ---------------CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence                           12445555555555555554421   11122  46788999999999999999999999999998


Q ss_pred             CC
Q 018784          299 TN  300 (350)
Q Consensus       299 ~~  300 (350)
                      ..
T Consensus       283 ~~  284 (297)
T 2pm7_B          283 EN  284 (297)
T ss_dssp             EC
T ss_pred             EC
Confidence            74

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=5.7e-40  Score=297.35  Aligned_cols=285  Identities=13%  Similarity=0.176  Sum_probs=237.1

Q ss_pred             EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc--eeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEe
Q 018784           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~--~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vW   88 (350)
                      ++..|.++|.+++|+|   +|++||+|+.|++|+||+..+++  .+..+.+|...|.+++|++++.++++++.||.|++|
T Consensus         3 ~~~~~~~~i~~~~~s~---~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vw   79 (372)
T 1k8k_C            3 YHSFLVEPISCHAWNK---DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW   79 (372)
T ss_dssp             EEESCSSCCCEEEECT---TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             eecccCCCeEEEEECC---CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEE
Confidence            4577999999999986   99999999999999999999887  888999999999999999999999999999999999


Q ss_pred             eCCCCCeeee---eeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCC---CCeeecCCCCcEEEEEEeCCCCcEEE
Q 018784           89 DALTGDEKHS---FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA---PPREVGNSSGSIRTVAWLHSDQTILS  162 (350)
Q Consensus        89 d~~~~~~~~~---~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~  162 (350)
                      |+.+++....   ..|...|.+++|+|++++|++++.|+.|++||+.....   .......|...+.+++|.+ ++.+++
T Consensus        80 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~  158 (372)
T 1k8k_C           80 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLA  158 (372)
T ss_dssp             EEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEE
T ss_pred             ECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC-CCCEEE
Confidence            9988764333   35888999999999999999999999999999976542   1223356788999999986 556788


Q ss_pred             EEeCCCeEEEEECC------------------CCceeEeec-CCCCeEEEEEecCCcEEEE-EcCCcEEEEECCCcceee
Q 018784          163 SCTDSGGVRLWDAR------------------SGKIVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVK  222 (350)
Q Consensus       163 s~~~dg~i~iwd~~------------------~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~~~~  222 (350)
                      +++.|+.|++||++                  .++.+..+. +...+.+++|+|+++++++ +.++.|++||+++.+.+.
T Consensus       159 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  238 (372)
T 1k8k_C          159 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA  238 (372)
T ss_dssp             EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE
T ss_pred             EEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeE
Confidence            88999999999954                  567777775 4567999999999987765 468899999999988888


Q ss_pred             eeecCCCC-ceeEecCCCCcEEEEecCCCeEEEEEccc--Cee--------------------------------E----
Q 018784          223 GYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHT--GEQ--------------------------------I----  263 (350)
Q Consensus       223 ~~~~~~~~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~--~~~--------------------------------~----  263 (350)
                      .+..+... ..+.+.+ ++.++++| .|+.|++|++.+  +..                                .    
T Consensus       239 ~~~~~~~~v~~~~~~~-~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (372)
T 1k8k_C          239 TLASETLPLLAVTFIT-ESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAA  316 (372)
T ss_dssp             EEECSSCCEEEEEEEE-TTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-------
T ss_pred             EEccCCCCeEEEEEec-CCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcc
Confidence            77765433 4455555 46777777 899999999987  421                                0    


Q ss_pred             --Eee-cCCCcCEEEEEEc-CCC---CEEEEecCCCcEEEecCCC
Q 018784          264 --GCN-KGHHGPVHCVRFS-PGG---ESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       264 --~~~-~~h~~~v~~l~~s-p~~---~~lasgs~Dg~v~vw~~~~  301 (350)
                        ..+ .+|..+|++++|+ +++   .+|+||+.||.|++|++..
T Consensus       317 ~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          317 AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             --CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             ccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence              223 4899999999966 666   9999999999999999754

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4e-39  Score=287.51  Aligned_cols=282  Identities=16%  Similarity=0.188  Sum_probs=236.7

Q ss_pred             eEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeee---cc--CccCCeEEEEECCCCcEEEEeeCCCe
Q 018784           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT---FE--GHKGAVWSCCLDANALFSASGSADFT   84 (350)
Q Consensus        10 ~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~---l~--gH~~~V~~v~~~~~~~~l~s~s~Dg~   84 (350)
                      +...+|..+|.+++|+|   ++++|++++ |+++++|+..+++....   +.  +|...|.+++|++++.++++++.||.
T Consensus        45 ~~~~~h~~~v~~~~~~~---~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  120 (337)
T 1gxr_A           45 INTLNHGEVVCAVTISN---PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST  120 (337)
T ss_dssp             EEEECCSSCCCEEEECS---SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred             ceeccCCCceEEEEEec---CCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCc
Confidence            33468999999999986   999999999 99999999987654333   32  79999999999999999999999999


Q ss_pred             EEEeeCCCCC--eeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEE
Q 018784           85 AKLWDALTGD--EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL  161 (350)
Q Consensus        85 v~vWd~~~~~--~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  161 (350)
                      |++||+.+++  ....+ .|...|.+++|+|++++|++++.|+.|++||+.+... ......|...+.+++|++ ++..+
T Consensus       121 i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~l  198 (337)
T 1gxr_A          121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISN-DGTKL  198 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECT-TSSEE
T ss_pred             EEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCce-eeeeecccCceEEEEECC-CCCEE
Confidence            9999998876  33333 4788899999999999999999999999999986543 334456788999999986 55677


Q ss_pred             EEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCCceeEecCCCC
Q 018784          162 SSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG  240 (350)
Q Consensus       162 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (350)
                      ++++.|+.|++||+++++.+..+....++.+++|+|++++++++ .++.|++||+++...............+.+.+ ++
T Consensus       199 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~  277 (337)
T 1gxr_A          199 WTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CG  277 (337)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECT-TS
T ss_pred             EEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECC-CC
Confidence            88899999999999999999888888999999999999887765 57899999998876543332233344555655 57


Q ss_pred             cEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          241 NIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       241 ~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                      ++|++++.|+.|++||+.+++.+.. ..|...|.+++|+|++++|++++.||.|++|++
T Consensus       278 ~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          278 KWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CEEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            8999999999999999999887743 458889999999999999999999999999986

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=9.6e-40  Score=301.24  Aligned_cols=270  Identities=20%  Similarity=0.346  Sum_probs=226.1

Q ss_pred             eeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECC
Q 018784           54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN  132 (350)
Q Consensus        54 ~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~  132 (350)
                      ...+.+|.++|++++|+|++.+++||+.||+|++||+.+++....+ .|...|.+++|+|++++|++|+.|++|++||+.
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~  180 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ  180 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence            4578899999999999999999999999999999999998877766 489999999999999999999999999999997


Q ss_pred             CCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEE-cCCcE
Q 018784          133 RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSV  210 (350)
Q Consensus       133 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~~~i  210 (350)
                      +... ......|...|.+++|.+ ++.++++|+.|++|++||+++++++..+..+ ..+..+.++|++.+++++ .|+.|
T Consensus       181 ~~~~-~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v  258 (410)
T 1vyh_C          181 GFEC-IRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV  258 (410)
T ss_dssp             SSCE-EECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCce-eEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeE
Confidence            6443 334466888999999986 4567889999999999999999998888754 579999999999987654 68999


Q ss_pred             EEEECCCcceeeeeecCCCC-ceeEecCC-------------------CCcEEEEecCCCeEEEEEcccCeeEEeecCCC
Q 018784          211 KFWDANHFGLVKGYNMPCNT-ESASLEPK-------------------LGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHH  270 (350)
Q Consensus       211 ~vwd~~~~~~~~~~~~~~~~-~~~~~~~~-------------------~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~  270 (350)
                      ++||+++..+...+..+... ..+.+.+.                   .+.+|++|+.|+.|++||+.++..+..+.+|.
T Consensus       259 ~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~  338 (410)
T 1vyh_C          259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD  338 (410)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred             EEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCC
Confidence            99999988777666544333 33444442                   26789999999999999999999999999999


Q ss_pred             cCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccch
Q 018784          271 GPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGK  340 (350)
Q Consensus       271 ~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~  340 (350)
                      .+|.+++|+|++++|++|+.|+.|++||+.......               ....+...|.++.++|+|.
T Consensus       339 ~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~---------------~~~~h~~~v~~l~~~~~~~  393 (410)
T 1vyh_C          339 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK---------------TLNAHEHFVTSLDFHKTAP  393 (410)
T ss_dssp             SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE---------------EEECCSSCEEEEEECSSSS
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE---------------EEcCCCCcEEEEEEcCCCC
Confidence            999999999999999999999999999986543322               2233455677888888774

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.2e-40  Score=297.91  Aligned_cols=287  Identities=11%  Similarity=0.196  Sum_probs=228.2

Q ss_pred             eeccCCceeEEEecccCCCc-cEEEEEeCCCCeeEeeCCCCceeeeccC-----ccCCeEEEEECCC----CcEEEEeeC
Q 018784           12 CHGHSRPVVDLFYSPITPDG-FFLVSASKDSSPMLRNGETGDWIGTFEG-----HKGAVWSCCLDAN----ALFSASGSA   81 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg-~~lasgs~d~~v~iw~~~~~~~~~~l~g-----H~~~V~~v~~~~~----~~~l~s~s~   81 (350)
                      ..||..+|++++|+|.++++ ..+++++.++.|++|+..+++.+..+..     |...|.+++|+++    +.++++|+.
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   93 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS   93 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence            35999999999999854444 3455556667999999998888777765     5577999999998    679999999


Q ss_pred             CCeEEEeeCCCCCeeeeee-ccccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCCCCeee--cCCCCcEEEEEEeCCC
Q 018784           82 DFTAKLWDALTGDEKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREV--GNSSGSIRTVAWLHSD  157 (350)
Q Consensus        82 Dg~v~vWd~~~~~~~~~~~-h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~  157 (350)
                      ||.|++||+.+++....+. |...|.+++|+| ++.+|++++.|+.|++||+.+++......  ..|...+.+++|++ +
T Consensus        94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~  172 (366)
T 3k26_A           94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL-L  172 (366)
T ss_dssp             TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT-T
T ss_pred             CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC-C
Confidence            9999999999998887775 999999999999 99999999999999999998654332221  46888999999986 5


Q ss_pred             CcEEEEEeCCCeEEEEECCCCceeEeec-----------------------------CCCCeEEEEEecCCcEEEEEcCC
Q 018784          158 QTILSSCTDSGGVRLWDARSGKIVQTLE-----------------------------TKSPVTSAEVSRDGRYITTADGS  208 (350)
Q Consensus       158 ~~~~~s~~~dg~i~iwd~~~~~~~~~~~-----------------------------~~~~v~~~~~~~~~~~l~~~~~~  208 (350)
                      +..+++++.|+.|++||+++++....+.                             +...+.+++|+ ...+++++.++
T Consensus       173 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~  251 (366)
T 3k26_A          173 GEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCEN  251 (366)
T ss_dssp             SSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSSS
T ss_pred             CCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-CCEEEEEecCC
Confidence            5678888999999999999876544333                             55678999998 33444455689


Q ss_pred             cEEEEECCCcce--------------eeeeecCCC-CceeEecCC-CCcEEEEecCCCeEEEEEcccCee----EEeecC
Q 018784          209 SVKFWDANHFGL--------------VKGYNMPCN-TESASLEPK-LGNIFIAGGEDMWVHVFDFHTGEQ----IGCNKG  268 (350)
Q Consensus       209 ~i~vwd~~~~~~--------------~~~~~~~~~-~~~~~~~~~-~~~~l~sg~~d~~i~v~d~~~~~~----~~~~~~  268 (350)
                      .|++||+++...              +..+..+.. ...+.+.+. .+++|++|+.|+.|++||+.+++.    ...+.+
T Consensus       252 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~  331 (366)
T 3k26_A          252 AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTH  331 (366)
T ss_dssp             EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECC
T ss_pred             EEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcc
Confidence            999999887643              333333222 233344442 279999999999999999998753    446777


Q ss_pred             C--CcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          269 H--HGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       269 h--~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      |  ...|++++|+|++++|++|+.||.|++||+.
T Consensus       332 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          332 HKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             TTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            7  7899999999999999999999999999974

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.7e-39  Score=295.25  Aligned_cols=294  Identities=21%  Similarity=0.244  Sum_probs=241.2

Q ss_pred             eEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeecc-------------CccCCeEEEEECC-CCcE
Q 018784           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-------------GHKGAVWSCCLDA-NALF   75 (350)
Q Consensus        10 ~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~-------------gH~~~V~~v~~~~-~~~~   75 (350)
                      .++++|.++|.+++|+|  .++.+||+|+.|++|+||+..+++....+.             +|...|.+++|++ ++.+
T Consensus        37 ~~~~~h~~~v~~~~~s~--~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  114 (408)
T 4a11_B           37 DVERIHGGGINTLDIEP--VEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM  114 (408)
T ss_dssp             EECCCCSSCEEEEEECT--TTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred             eeeeccCCcEEEEEEec--CCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence            34689999999999985  278899999999999999999877665543             6999999999999 7789


Q ss_pred             EEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCC---CeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEE
Q 018784           76 SASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDT---HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVA  152 (350)
Q Consensus        76 l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~---~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~  152 (350)
                      +++++.||.|++||+.+++....+.+...+.++.++|.+   .++++++.|+.|++||+.++.. ......|...+.+++
T Consensus       115 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~v~~~~  193 (408)
T 4a11_B          115 FTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-SHILQGHRQEILAVS  193 (408)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-CEEECCCCSCEEEEE
T ss_pred             EEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-eeeecCCCCcEEEEE
Confidence            999999999999999999888888899999999999854   5999999999999999987654 344566888999999


Q ss_pred             EeCCCCcEEEEEeCCCeEEEEECCCCc-eeEee----------------cCCCCeEEEEEecCCcEEEEE-cCCcEEEEE
Q 018784          153 WLHSDQTILSSCTDSGGVRLWDARSGK-IVQTL----------------ETKSPVTSAEVSRDGRYITTA-DGSSVKFWD  214 (350)
Q Consensus       153 ~~~~~~~~~~s~~~dg~i~iwd~~~~~-~~~~~----------------~~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd  214 (350)
                      |.+.+..++++++.||.|++||++++. ++..+                .+...+.+++|+|++++++++ .++.|++||
T Consensus       194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd  273 (408)
T 4a11_B          194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN  273 (408)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence            998777789999999999999998765 33333                234679999999999877654 688999999


Q ss_pred             CCCcceeeeeecC-----CCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEec
Q 018784          215 ANHFGLVKGYNMP-----CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS  289 (350)
Q Consensus       215 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs  289 (350)
                      +++......+...     ...............+++++.|+.|++||+.+++.+..+.+|...|++++|+|++++|++|+
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~  353 (408)
T 4a11_B          274 SSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGS  353 (408)
T ss_dssp             TTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred             CCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEEC
Confidence            9887654433221     11122233333456778888899999999999999999999999999999999999999999


Q ss_pred             CCCcEEEecCCCCCccc
Q 018784          290 EDGTIRIWQTNPPNHEE  306 (350)
Q Consensus       290 ~Dg~v~vw~~~~~~~~~  306 (350)
                      .||.|++|++...+...
T Consensus       354 ~dg~i~iw~~~~~~~~~  370 (408)
T 4a11_B          354 RDCNILAWVPSLYEPVP  370 (408)
T ss_dssp             TTSCEEEEEECC-----
T ss_pred             CCCeEEEEeCCCCCccC
Confidence            99999999998766543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.5e-39  Score=294.54  Aligned_cols=285  Identities=14%  Similarity=0.192  Sum_probs=235.9

Q ss_pred             eEeeccCCceeEEEecccCCCcc-EEEEEeCCCCeeEeeC----CCCc------eeeeccC----------ccCCeEEEE
Q 018784           10 LVCHGHSRPVVDLFYSPITPDGF-FLVSASKDSSPMLRNG----ETGD------WIGTFEG----------HKGAVWSCC   68 (350)
Q Consensus        10 ~~~~gH~~~v~~~~~~~~s~dg~-~lasgs~d~~v~iw~~----~~~~------~~~~l~g----------H~~~V~~v~   68 (350)
                      +..+.|.++|.+++|+|   +|. +||+|+.|+.+++|+.    .+++      ....+..          |.+.|.+++
T Consensus        39 ~~~~~~~~~v~~~~~s~---~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (425)
T 1r5m_A           39 LKEIVKLDNIVSSTWNP---LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLA  115 (425)
T ss_dssp             CEEEEECSCCSEEEECS---SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEE
T ss_pred             eeeeeccCceEEEEECC---CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEE
Confidence            33467889999999997   898 9999999999999999    8887      4444444          788999999


Q ss_pred             ECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCC----------
Q 018784           69 LDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP----------  137 (350)
Q Consensus        69 ~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~----------  137 (350)
                      |++++.+|++++.||.|++|| .++.....+ .|...|.+++|+|++++|++++.|+.|++||+.++...          
T Consensus       116 ~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  194 (425)
T 1r5m_A          116 WSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGG  194 (425)
T ss_dssp             ECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----
T ss_pred             EcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCc
Confidence            999999999999999999999 555555555 48899999999999999999999999999998643211          


Q ss_pred             ---------------------------------------------CeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEE
Q 018784          138 ---------------------------------------------PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (350)
Q Consensus       138 ---------------------------------------------~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i  172 (350)
                                                                   ......|...+.+++|++. +.++++++.|+.|++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~i  273 (425)
T 1r5m_A          195 SSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT-NKLLLSASDDGTLRI  273 (425)
T ss_dssp             -----------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT-TTEEEEEETTSCEEE
T ss_pred             cceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC-CCEEEEEcCCCEEEE
Confidence                                                         1122356778999999864 557888899999999


Q ss_pred             EECCCCceeEeec-CCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCC-ceeEecCCCCcEEEEecCCC
Q 018784          173 WDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIAGGEDM  250 (350)
Q Consensus       173 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~sg~~d~  250 (350)
                      ||+++++.+..+. +...+.+++|+|++.+++++.++.|++||+++...+..+..+... ..+.+.+ ++++|++++.|+
T Consensus       274 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg  352 (425)
T 1r5m_A          274 WHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQKYAVAFMDG  352 (425)
T ss_dssp             ECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSEEEEEETTS
T ss_pred             EECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCEEEEEECCC
Confidence            9999998888876 457899999999995566678999999999998888777664443 3445555 589999999999


Q ss_pred             eEEEEEcccCe--------------------eEEeecCCCc--CEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          251 WVHVFDFHTGE--------------------QIGCNKGHHG--PVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       251 ~i~v~d~~~~~--------------------~~~~~~~h~~--~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      .|++||+.+++                    .+..+.+|..  .|.+++|+|++++|++++.||.|++|++.
T Consensus       353 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          353 QVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             CEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             eEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            99999999888                    8888999976  99999999999999999999999999974

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-40  Score=303.33  Aligned_cols=287  Identities=13%  Similarity=0.143  Sum_probs=221.6

Q ss_pred             cceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC--ceeeeccCccCCeEEEEECCCCcEEEEeeCCCe
Q 018784            7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG--DWIGTFEGHKGAVWSCCLDANALFSASGSADFT   84 (350)
Q Consensus         7 ~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~--~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~   84 (350)
                      ..|.+.+.|.++|++++|+|   +|++||+|+.|++|+||+..++  +.+..+.+|.+.|.+++|++++.+|++++.|++
T Consensus         2 ~~~~~~~~~~~~v~~~~~s~---~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~   78 (377)
T 3dwl_C            2 ATSQVLHILPKPSYEHAFNS---QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRN   78 (377)
T ss_dssp             CCEEEEEECSSCCSCCEECS---SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSS
T ss_pred             CcceeEecCCCcEEEEEECC---CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCe
Confidence            45667788899999999997   9999999999999999999988  788899999999999999999999999999999


Q ss_pred             EEEeeCCCCC---eee-eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCC--CCeeecC-CCCcEEEEEEeCCC
Q 018784           85 AKLWDALTGD---EKH-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA--PPREVGN-SSGSIRTVAWLHSD  157 (350)
Q Consensus        85 v~vWd~~~~~---~~~-~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~--~~~~~~~-~~~~v~~~~~~~~~  157 (350)
                      |++||+.++.   ... ...|...|.+++|+|++++|++++.|+.|++||+.....  ....... |...|.+++|++ +
T Consensus        79 v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~  157 (377)
T 3dwl_C           79 AYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP-N  157 (377)
T ss_dssp             EEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT-T
T ss_pred             EEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC-C
Confidence            9999998876   333 346899999999999999999999999999999986653  2334444 889999999986 5


Q ss_pred             CcEEEEEeCCCeEEEEECC------------------CCceeEeecCCCCeEEEEEecCCcEEEE-EcCCcEEEEECCCc
Q 018784          158 QTILSSCTDSGGVRLWDAR------------------SGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHF  218 (350)
Q Consensus       158 ~~~~~s~~~dg~i~iwd~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~i~vwd~~~~  218 (350)
                      +.++++++.|++|++||++                  .++++..+.+...+.+++|+|++++|++ +.|+.|++||+++.
T Consensus       158 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~  237 (377)
T 3dwl_C          158 NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP  237 (377)
T ss_dssp             SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred             CCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            6788899999999999985                  3455556655678999999999987765 46899999999988


Q ss_pred             ce----eeeeecCCCC-ceeEecCCCCcEEEEecCCCeEEEEEcccCe-e------------------------------
Q 018784          219 GL----VKGYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGE-Q------------------------------  262 (350)
Q Consensus       219 ~~----~~~~~~~~~~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~-~------------------------------  262 (350)
                      ..    +..+..+... ..+.+.+ ++++|++|+.|+.+ +|+..... .                              
T Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (377)
T 3dwl_C          238 EQPPRALITVKLSQLPLRSLLWAN-ESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPV  315 (377)
T ss_dssp             TSCEEECCCEECSSSCEEEEEEEE-TTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC----
T ss_pred             CCcceeeEeecCCCCceEEEEEcC-CCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccc
Confidence            76    5555554443 4455655 57888888877766 66654211 0                              


Q ss_pred             --------EE-------------eecCCCcCEEEEEEcCCC-C---EEEEecCCCcEEEecC
Q 018784          263 --------IG-------------CNKGHHGPVHCVRFSPGG-E---SYASGSEDGTIRIWQT  299 (350)
Q Consensus       263 --------~~-------------~~~~h~~~v~~l~~sp~~-~---~lasgs~Dg~v~vw~~  299 (350)
                              ..             ....|...|+++++.+.. .   .|+|||.||.|++||+
T Consensus       316 ~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          316 SFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             ---------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                    00             012399999999976643 3   5999999999999985

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.2e-40  Score=299.48  Aligned_cols=289  Identities=22%  Similarity=0.348  Sum_probs=232.7

Q ss_pred             CCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEE
Q 018784           41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLT  119 (350)
Q Consensus        41 ~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~s  119 (350)
                      ..+..|+..+..+..+|.||.+.|++++|+|++.+|+|||.||+|+|||..+++....+ .|...|.+++|+|++++|++
T Consensus        46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las  125 (380)
T 3iz6_a           46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVAC  125 (380)
T ss_dssp             GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEE
T ss_pred             ccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEE
Confidence            44567888888899999999999999999999999999999999999999988877766 48889999999999999999


Q ss_pred             eeCCCeEEEEECCCCC------CCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec------CC
Q 018784          120 GGFEKILRIFDLNRPD------APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE------TK  187 (350)
Q Consensus       120 g~~d~~v~vwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~------~~  187 (350)
                      |+.|+.+++||+....      ........|.+.+.++.|.+.++..+++|+.|++|++||+++++.+..+.      +.
T Consensus       126 ~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~  205 (380)
T 3iz6_a          126 GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHT  205 (380)
T ss_dssp             CCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCC
T ss_pred             eeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCc
Confidence            9999999999986432      12234567888899999998877888999999999999999998887662      34


Q ss_pred             CCeEEEEEec-CCcEEEE-EcCCcEEEEECCC-cceeeeeecCCC-CceeEecCCCCcEEEEecCCCeEEEEEcccCeeE
Q 018784          188 SPVTSAEVSR-DGRYITT-ADGSSVKFWDANH-FGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (350)
Q Consensus       188 ~~v~~~~~~~-~~~~l~~-~~~~~i~vwd~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~  263 (350)
                      ..+.++.+++ ++.++++ +.|+.|++||++. ...++.+..+.. ...+.+.| ++++|++|+.|++|++||+++++.+
T Consensus       206 ~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~  284 (380)
T 3iz6_a          206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQL  284 (380)
T ss_dssp             SCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEE
T ss_pred             cCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEE
Confidence            6799999986 6766654 5689999999984 355555554433 44556665 5899999999999999999999988


Q ss_pred             EeecCCC-------cCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEc
Q 018784          264 GCNKGHH-------GPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHIN  336 (350)
Q Consensus       264 ~~~~~h~-------~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  336 (350)
                      ..+..+.       ..|++++|+|++++|++|+.||.|++||+...+.....           ......+...|.++.++
T Consensus       285 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~-----------~~~~~~h~~~v~~l~~s  353 (380)
T 3iz6_a          285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL-----------GTLQNSHEGRISCLGLS  353 (380)
T ss_dssp             EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE-----------CCSCSSCCCCCCEEEEC
T ss_pred             EEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE-----------ecccCCCCCceEEEEEC
Confidence            7765543       34899999999999999999999999998654432211           11113455667888888


Q ss_pred             ccchh
Q 018784          337 KEGKA  341 (350)
Q Consensus       337 ~~g~~  341 (350)
                      |||+.
T Consensus       354 ~dg~~  358 (380)
T 3iz6_a          354 SDGSA  358 (380)
T ss_dssp             SSSSE
T ss_pred             CCCCE
Confidence            88763

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=9.9e-39  Score=287.15  Aligned_cols=273  Identities=19%  Similarity=0.362  Sum_probs=226.2

Q ss_pred             CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEE
Q 018784           51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIF  129 (350)
Q Consensus        51 ~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vw  129 (350)
                      .+...+|.+|.+.|++++|++++.+++||+.||+|++||..++.....+ .|...|.+++|+|++++|++|+.|+.|++|
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw  124 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            3456789999999999999999999999999999999999988877766 478889999999999999999999999999


Q ss_pred             ECCCCCCC---CeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEE
Q 018784          130 DLNRPDAP---PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA  205 (350)
Q Consensus       130 d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~  205 (350)
                      ++......   ......|.+.+.++.|.+++  .+++++.|++|++||+++++++..+.. ...+.+++|+|++++++++
T Consensus       125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg  202 (340)
T 1got_B          125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             ETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             ECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence            99765422   23346788899999997643  377888999999999999999888875 4689999999999887655


Q ss_pred             -cCCcEEEEECCCcceeeeeecCCCC-ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec--CCCcCEEEEEEcCC
Q 018784          206 -DGSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK--GHHGPVHCVRFSPG  281 (350)
Q Consensus       206 -~~~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~--~h~~~v~~l~~sp~  281 (350)
                       .|+.|++||+++..++..+..+... ..+.+.| ++++|++|+.|+.|++||+++++.+..+.  .+...|.+++|+|+
T Consensus       203 ~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~  281 (340)
T 1got_B          203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS  281 (340)
T ss_dssp             ETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred             eCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCC
Confidence             6899999999998888777655443 4455655 58999999999999999999988776654  34457999999999


Q ss_pred             CCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccchh
Q 018784          282 GESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKA  341 (350)
Q Consensus       282 ~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~  341 (350)
                      +++|++|+.|+.|++||+.......               ....+...|.++.++|||+.
T Consensus       282 g~~l~~g~~d~~i~vwd~~~~~~~~---------------~~~~h~~~v~~~~~s~dg~~  326 (340)
T 1got_B          282 GRLLLAGYDDFNCNVWDALKADRAG---------------VLAGHDNRVSCLGVTDDGMA  326 (340)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEE---------------EEECCSSCEEEEEECTTSSC
T ss_pred             CCEEEEECCCCeEEEEEcccCcEee---------------EeecCCCcEEEEEEcCCCCE
Confidence            9999999999999999986544322               22345566888888888863

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-40  Score=305.93  Aligned_cols=287  Identities=16%  Similarity=0.222  Sum_probs=238.4

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC----CceeeeccCccCCeEEEEECCC-CcEEEEeeCCCeEE
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET----GDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAK   86 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~----~~~~~~l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~   86 (350)
                      ..+|..+|.+++|+|   ++.+|++|+.|++|++|+..+    .+.+..+.+|...|.+++|+++ +.++++++.||.|+
T Consensus        63 ~~~~~~~v~~~~~s~---~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~  139 (416)
T 2pm9_A           63 SLQVDSKFNDLDWSH---NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF  139 (416)
T ss_dssp             CCCCSSCEEEEEECS---SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred             EEecCCceEEEEECC---CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence            347999999999986   999999999999999999987    4588899999999999999998 89999999999999


Q ss_pred             EeeCCCCC------eeee----eeccccEeEEEEcCC-CCeEEEeeCCCeEEEEECCCCCCCCeeecC-----CCCcEEE
Q 018784           87 LWDALTGD------EKHS----FEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPPREVGN-----SSGSIRT  150 (350)
Q Consensus        87 vWd~~~~~------~~~~----~~h~~~V~~~~~~~~-~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~-----~~~~v~~  150 (350)
                      +||+.++.      ....    ..|...|.+++|+|+ +.+|++++.|+.|++||+............     |...+.+
T Consensus       140 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~  219 (416)
T 2pm9_A          140 IWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV  219 (416)
T ss_dssp             BCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEE
T ss_pred             EEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEE
Confidence            99998776      3332    258889999999999 789999999999999999865433222222     1678999


Q ss_pred             EEEeCCCCcEEEEEeCCC---eEEEEECCCC-ceeEeec--CCCCeEEEEEec-CCcEEEE-EcCCcEEEEECCCcceee
Q 018784          151 VAWLHSDQTILSSCTDSG---GVRLWDARSG-KIVQTLE--TKSPVTSAEVSR-DGRYITT-ADGSSVKFWDANHFGLVK  222 (350)
Q Consensus       151 ~~~~~~~~~~~~s~~~dg---~i~iwd~~~~-~~~~~~~--~~~~v~~~~~~~-~~~~l~~-~~~~~i~vwd~~~~~~~~  222 (350)
                      ++|++.+..++++++.|+   .|++||++++ +++..+.  +...+.+++|+| +++++++ +.++.|++||+++.+.+.
T Consensus       220 ~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~  299 (416)
T 2pm9_A          220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLS  299 (416)
T ss_dssp             EEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEE
T ss_pred             EEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccce
Confidence            999987778899999998   9999999986 5666665  567899999999 7877665 468999999999988887


Q ss_pred             eeecCCC-CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEee-----------------------------------
Q 018784          223 GYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCN-----------------------------------  266 (350)
Q Consensus       223 ~~~~~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~-----------------------------------  266 (350)
                      .+..+.. ...+.+.+..+.+|++++.|+.|++||+.++......                                   
T Consensus       300 ~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (416)
T 2pm9_A          300 QFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAP  379 (416)
T ss_dssp             EEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCC
T ss_pred             eecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCC
Confidence            7765443 4566677754489999999999999999876532221                                   


Q ss_pred             cCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784          267 KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       267 ~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~  301 (350)
                      ..|..++.+++|+|+|++|++|+.|+.|+||++.+
T Consensus       380 ~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          380 TWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             STTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred             ccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence            11677888999999999999999999999999864

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.3e-39  Score=286.21  Aligned_cols=272  Identities=20%  Similarity=0.338  Sum_probs=222.9

Q ss_pred             CceeeeccCccCCeEEEEECCC----CcEEEEeeCCCeEEEeeCCCCCeee--ee-eccccEeEEEEcCCCCeEEEeeCC
Q 018784           51 GDWIGTFEGHKGAVWSCCLDAN----ALFSASGSADFTAKLWDALTGDEKH--SF-EHKHIVRACAFSEDTHLLLTGGFE  123 (350)
Q Consensus        51 ~~~~~~l~gH~~~V~~v~~~~~----~~~l~s~s~Dg~v~vWd~~~~~~~~--~~-~h~~~V~~~~~~~~~~~l~sg~~d  123 (350)
                      +...+.+.+|.+.|++++|+++    +.+++|||.|++|+||+........  .+ .|...|.+++|+|++.++++++.|
T Consensus        22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D  101 (321)
T 3ow8_A           22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD  101 (321)
T ss_dssp             EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence            3445678899999999999874    6799999999999999987665332  33 589999999999999999999999


Q ss_pred             CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEE
Q 018784          124 KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYI  202 (350)
Q Consensus       124 ~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l  202 (350)
                      ++|++||+.++... .....+...+.+++|+| ++.++++++.|++|++||+++++....+.. ...+.+++|+|++++|
T Consensus       102 ~~i~lWd~~~~~~~-~~~~~~~~~~~~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  179 (321)
T 3ow8_A          102 AHIRLWDLENGKQI-KSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL  179 (321)
T ss_dssp             SEEEEEETTTTEEE-EEEECCTTCCCCEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEE
T ss_pred             CcEEEEECCCCCEE-EEEeCCCccEEEEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEE
Confidence            99999999865433 33445666788899875 566788899999999999999988777765 4579999999999988


Q ss_pred             EEE-cCCcEEEEECCCcceeeeeecCCC-CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcC
Q 018784          203 TTA-DGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSP  280 (350)
Q Consensus       203 ~~~-~~~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp  280 (350)
                      +++ .++.|++||+++.+.+..+..+.. ...+.+.| ++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|
T Consensus       180 asg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp  258 (321)
T 3ow8_A          180 ASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP  258 (321)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred             EEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECC
Confidence            765 589999999999888877765443 34556665 588999999999999999999999999999999999999999


Q ss_pred             CCCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccch
Q 018784          281 GGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGK  340 (350)
Q Consensus       281 ~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~  340 (350)
                      ++++|++|+.|++|++||+......               .....+...|.++.++|+|+
T Consensus       259 ~~~~l~s~s~D~~v~iwd~~~~~~~---------------~~~~~h~~~v~~v~~s~~g~  303 (321)
T 3ow8_A          259 DDTHFVSSSSDKSVKVWDVGTRTCV---------------HTFFDHQDQVWGVKYNGNGS  303 (321)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEE---------------EEECCCSSCEEEEEECTTSS
T ss_pred             CCCEEEEEeCCCcEEEEeCCCCEEE---------------EEEcCCCCcEEEEEECCCCC
Confidence            9999999999999999998654332               22334555677888888875

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2.1e-39  Score=301.16  Aligned_cols=278  Identities=18%  Similarity=0.271  Sum_probs=226.7

Q ss_pred             cCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc-----------eeeeccCcc------------CCeEEEEECC
Q 018784           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-----------WIGTFEGHK------------GAVWSCCLDA   71 (350)
Q Consensus        15 H~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~-----------~~~~l~gH~------------~~V~~v~~~~   71 (350)
                      |.++|++++|+|   +|.+||+|+.|+.|+||+..+++           +...+.+|.            +.|.+++|++
T Consensus        27 ~~~~V~~v~~s~---~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~  103 (447)
T 3dw8_B           27 EADIISTVEFNH---SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP  103 (447)
T ss_dssp             GGGSEEEEEECS---SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred             ccCcEEEEEECC---CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence            678999999997   99999999999999999998876           578899998            8899999999


Q ss_pred             CC--cEEEEeeCCCeEEEeeCCCCCee---------------------------------------ee--eeccccEeEE
Q 018784           72 NA--LFSASGSADFTAKLWDALTGDEK---------------------------------------HS--FEHKHIVRAC  108 (350)
Q Consensus        72 ~~--~~l~s~s~Dg~v~vWd~~~~~~~---------------------------------------~~--~~h~~~V~~~  108 (350)
                      ++  .++++++.|++|++||+.++...                                       ..  ..|...|.++
T Consensus       104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  183 (447)
T 3dw8_B          104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI  183 (447)
T ss_dssp             CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred             CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence            98  79999999999999998654321                                       11  2588899999


Q ss_pred             EEcCCCCeEEEeeCCCeEEEEECCCCCCCCe-------eecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCce-
Q 018784          109 AFSEDTHLLLTGGFEKILRIFDLNRPDAPPR-------EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI-  180 (350)
Q Consensus       109 ~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~-  180 (350)
                      +|+|++++|++| .|+.|++||+........       ....|...|.+++|++.+..++++|+.|++|++||+++++. 
T Consensus       184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~  262 (447)
T 3dw8_B          184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC  262 (447)
T ss_dssp             EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred             EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence            999999999998 799999999974322111       24567889999999876658899999999999999999886 


Q ss_pred             ---eEeecCCC-------------CeEEEEEecCCcEEEEEcCCcEEEEECCC-cceeeeeecCCCCce-----------
Q 018784          181 ---VQTLETKS-------------PVTSAEVSRDGRYITTADGSSVKFWDANH-FGLVKGYNMPCNTES-----------  232 (350)
Q Consensus       181 ---~~~~~~~~-------------~v~~~~~~~~~~~l~~~~~~~i~vwd~~~-~~~~~~~~~~~~~~~-----------  232 (350)
                         +..+..+.             .+.+++|+|++++|+++.++.|++||+++ ..++..+..+.....           
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i  342 (447)
T 3dw8_B          263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI  342 (447)
T ss_dssp             CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred             cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeecccccccccccccccccc
Confidence               56666553             89999999999998887669999999987 666666655432211           


Q ss_pred             -----eEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec---------------------------------CCCcCEE
Q 018784          233 -----ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK---------------------------------GHHGPVH  274 (350)
Q Consensus       233 -----~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~---------------------------------~h~~~v~  274 (350)
                           +.+.+ ++++|++|+.|+.|++||+.+++.+. +.                                 .+...|.
T Consensus       343 ~~~~~~~~s~-~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  420 (447)
T 3dw8_B          343 FDKFECCWNG-SDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL  420 (447)
T ss_dssp             GCCCCEEECT-TSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred             ccceEEEECC-CCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence                 55665 57899999999999999999887653 22                                 2345789


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEecC
Q 018784          275 CVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       275 ~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                      +++|+|++.+||+++.++ +++|..
T Consensus       421 ~~~~~p~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          421 HTAWHPKENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             EEEECSSSSEEEEECSSC-EEEEEC
T ss_pred             EEEECCCCCEEEEEecce-eeeecc
Confidence            999999999999999886 777754

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=5.1e-38  Score=278.41  Aligned_cols=277  Identities=17%  Similarity=0.248  Sum_probs=224.2

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeec--cCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF--EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE   95 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l--~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~   95 (350)
                      +.++|+||+   ++ +||+|. |++|+|||.++++++..+  .+|...|.+++|++++++++||+.||+|++||+.+++.
T Consensus        27 y~~~l~WS~---~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~  101 (318)
T 4ggc_A           27 YLNLVDWSS---GN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR  101 (318)
T ss_dssp             TCBCEEECT---TS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             cceEEEECC---CC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee
Confidence            457788875   54 777764 999999999999988766  46888899999999999999999999999999999987


Q ss_pred             eeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 018784           96 KHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD  174 (350)
Q Consensus        96 ~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd  174 (350)
                      +..+ .|...+.++  ++++..+++++.++.+++|+.............|...+..+.+.+ ++.++++++.|++|++||
T Consensus       102 ~~~~~~h~~~~~~~--~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd  178 (318)
T 4ggc_A          102 LRNMTSHSARVGSL--SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWP  178 (318)
T ss_dssp             EEEEECCSSCEEEE--EEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred             EEEecCccceEEEe--ecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEE
Confidence            7766 477666655  455678999999999999998866655556677888899988875 556788999999999999


Q ss_pred             CCCCcee-----EeecCCCCeEEEEEecCCc-EEE--EE-cCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEE-
Q 018784          175 ARSGKIV-----QTLETKSPVTSAEVSRDGR-YIT--TA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFI-  244 (350)
Q Consensus       175 ~~~~~~~-----~~~~~~~~v~~~~~~~~~~-~l~--~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-  244 (350)
                      +++++..     ........+..+.+.|++. ++.  ++ .++.|++||.+..................+.+....+++ 
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  258 (318)
T 4ggc_A          179 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG  258 (318)
T ss_dssp             SSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEE
T ss_pred             CCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEE
Confidence            9987532     2223456789999998764 332  22 467899999998877776666555566667665444443 


Q ss_pred             EecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCC
Q 018784          245 AGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPP  302 (350)
Q Consensus       245 sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~  302 (350)
                      +|+.|+.|++||+.+++++..+.+|.+.|++|+|+|++++|||||.||+|+|||+...
T Consensus       259 sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          259 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             ECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             EEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            3558999999999999999999999999999999999999999999999999998543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=9.2e-39  Score=318.46  Aligned_cols=292  Identities=19%  Similarity=0.225  Sum_probs=251.7

Q ss_pred             ccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeE
Q 018784            6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA   85 (350)
Q Consensus         6 ~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v   85 (350)
                      +.....+.+|+++|.+++|+|   +|.+||+|+.|++|+|||..+++.+..+.+|.+.|.+++|+|++.++++++.||.|
T Consensus         3 l~~~~~~~~h~~~v~~i~~sp---~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i   79 (814)
T 3mkq_A            3 LDIKKTFSNRSDRVKGIDFHP---TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI   79 (814)
T ss_dssp             CCCEEEEEEECSCEEEEEECS---SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             cccceeeecCCCceEEEEECC---CCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeE
Confidence            344555689999999999987   99999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeCCCCCeeeeee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEE
Q 018784           86 KLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (350)
Q Consensus        86 ~vWd~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~  164 (350)
                      ++||..+++....+. |...|.+++|+|++.+|++++.|++|++||+............|...+.+++|++.++..++++
T Consensus        80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  159 (814)
T 3mkq_A           80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG  159 (814)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred             EEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence            999999998877765 8999999999999999999999999999999765444455567888999999998677889999


Q ss_pred             eCCCeEEEEECCCCceeEeecCC--CCeEEEEEec--CCcEEEEE-cCCcEEEEECCCcceeeeeecCCCCc-eeEecCC
Q 018784          165 TDSGGVRLWDARSGKIVQTLETK--SPVTSAEVSR--DGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPK  238 (350)
Q Consensus       165 ~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~  238 (350)
                      +.||+|++||+++++....+..+  .++..++|+|  ++.+++++ .++.|++||+++...+..+..+.... .+.+.+ 
T Consensus       160 ~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-  238 (814)
T 3mkq_A          160 CLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP-  238 (814)
T ss_dssp             ETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-
T ss_pred             eCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-
Confidence            99999999999988776666543  7899999998  88877665 57899999999988887776554443 445555 


Q ss_pred             CCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCC--EEEEecCCCcEEEecCCCC
Q 018784          239 LGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGE--SYASGSEDGTIRIWQTNPP  302 (350)
Q Consensus       239 ~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~--~lasgs~Dg~v~vw~~~~~  302 (350)
                      ++.++++++.|+.|++||+.+++.+..+..|...|++++|+|++.  +++++ .|+.+.+|++...
T Consensus       239 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  303 (814)
T 3mkq_A          239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGND  303 (814)
T ss_dssp             SSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCC
Confidence            578999999999999999999999999999999999999999987  35554 4667888887543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.8e-38  Score=292.26  Aligned_cols=278  Identities=18%  Similarity=0.268  Sum_probs=229.4

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeec--cCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF--EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE   95 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l--~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~   95 (350)
                      ++..|+|++   + .+||+|. |++|+|||..+++++..+  .+|...|++|+|++++.+||+|+.||+|+|||+.+++.
T Consensus       107 y~~~l~wS~---~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~  181 (420)
T 4gga_A          107 YLNLVDWSS---G-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR  181 (420)
T ss_dssp             TCBCEEECT---T-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             cceeEEECC---C-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE
Confidence            466677774   3 4788775 999999999999987755  57888999999999999999999999999999999987


Q ss_pred             eeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 018784           96 KHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD  174 (350)
Q Consensus        96 ~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd  174 (350)
                      +..+ .|...+.++.++  +.+|++|+.|+.+++||.............|...+..+.+.+ ++..+++++.|+.+++||
T Consensus       182 ~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-~g~~l~s~~~D~~v~i~~  258 (420)
T 4gga_A          182 LRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWP  258 (420)
T ss_dssp             EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred             EEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-CCCeeeeeeccccceEEe
Confidence            7766 588888887764  678999999999999999866555556677888899998875 566788999999999999


Q ss_pred             CCCCce----eE-eecCCCCeEEEEEecCC-cEEEEE---cCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEE
Q 018784          175 ARSGKI----VQ-TLETKSPVTSAEVSRDG-RYITTA---DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA  245 (350)
Q Consensus       175 ~~~~~~----~~-~~~~~~~v~~~~~~~~~-~~l~~~---~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  245 (350)
                      ..+++.    +. ...+...|..++|+|.+ .+++++   .|+.|++||++++.+...+..+.......+.+....++++
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~  338 (420)
T 4gga_A          259 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG  338 (420)
T ss_dssp             SSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEE
T ss_pred             eccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEE
Confidence            987653    22 23345789999999965 455432   4789999999999988888777666677777654444433


Q ss_pred             -ecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCC
Q 018784          246 -GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPN  303 (350)
Q Consensus       246 -g~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~  303 (350)
                       |+.|+.|++||+.+++++..+.+|.+.|++|+|+|++++|+|||.|++|+|||+....
T Consensus       339 sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          339 HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  397 (420)
T ss_dssp             ECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred             EecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence             4479999999999999999999999999999999999999999999999999986543

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-40  Score=311.74  Aligned_cols=285  Identities=14%  Similarity=0.105  Sum_probs=211.1

Q ss_pred             cCCceeEEEecccC-------------------------CCccEEEEEeCCCCeeEeeCCCCcee----eeccCccCCeE
Q 018784           15 HSRPVVDLFYSPIT-------------------------PDGFFLVSASKDSSPMLRNGETGDWI----GTFEGHKGAVW   65 (350)
Q Consensus        15 H~~~v~~~~~~~~s-------------------------~dg~~lasgs~d~~v~iw~~~~~~~~----~~l~gH~~~V~   65 (350)
                      +.++|++|+|+|..                         |++.++|++|.|++|+||+..+++..    .++.+|.+.|+
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~  211 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW  211 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence            46678888887743                         22233445668899999998877642    45778899999


Q ss_pred             EEEECCC------CcEEEEeeCCCeEEEeeCCCCCee-----------eee-eccccEeEEEEcCCCCeEEEeeCCCeEE
Q 018784           66 SCCLDAN------ALFSASGSADFTAKLWDALTGDEK-----------HSF-EHKHIVRACAFSEDTHLLLTGGFEKILR  127 (350)
Q Consensus        66 ~v~~~~~------~~~l~s~s~Dg~v~vWd~~~~~~~-----------~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~  127 (350)
                      .++|+|+      +.+|||++.||+|++||+.++...           ..+ .|...|.+++|+|++ .|++|+.|++|+
T Consensus       212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~  290 (524)
T 2j04_B          212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVA  290 (524)
T ss_dssp             EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEE
T ss_pred             EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEE
Confidence            9999986      579999999999999999765421           123 478899999999864 799999999999


Q ss_pred             EEECCCCCCCCeeecCCCCcEEEEE-EeCCCC-cEEEEEeCCCeEEEEECCCCceeEeecCC---CCeEEEEEecCCcEE
Q 018784          128 IFDLNRPDAPPREVGNSSGSIRTVA-WLHSDQ-TILSSCTDSGGVRLWDARSGKIVQTLETK---SPVTSAEVSRDGRYI  202 (350)
Q Consensus       128 vwd~~~~~~~~~~~~~~~~~v~~~~-~~~~~~-~~~~s~~~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l  202 (350)
                      +||+.++..+......|...|.+++ ..++++ .++++|+.|++|+|||+++++++..+..+   ..+.+++|+|+++.+
T Consensus       291 lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l  370 (524)
T 2j04_B          291 EFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSY  370 (524)
T ss_dssp             EEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEE
T ss_pred             EEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeE
Confidence            9999876555555677899999995 345555 89999999999999999998766555432   247889999998877


Q ss_pred             EEE-cCCcEEEEECCCcceeeeeecCCCC-ceeEecCCCCcEEEEecCCCeEEEEEccc---------------------
Q 018784          203 TTA-DGSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHT---------------------  259 (350)
Q Consensus       203 ~~~-~~~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~---------------------  259 (350)
                      +++ .+++|++||+++..++..+..+... ..+.+.| ++++|++|+.|++|++||+..                     
T Consensus       371 ~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp-~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v  449 (524)
T 2j04_B          371 IYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR-LHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKW  449 (524)
T ss_dssp             EEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS-SCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEEC
T ss_pred             EEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC-CCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEe
Confidence            655 5789999999998776665554433 4555655 688999999999999987421                     


Q ss_pred             -----------------------CeeEEeecCCCcCEEEEEEcCCCC---EEEEecCCCcEEEecCCC
Q 018784          260 -----------------------GEQIGCNKGHHGPVHCVRFSPGGE---SYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       260 -----------------------~~~~~~~~~h~~~v~~l~~sp~~~---~lasgs~Dg~v~vw~~~~  301 (350)
                                             +..+..+.+|..+|++++|+|+++   .+|+|+.||.|+||++.-
T Consensus       450 ~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          450 DYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             BCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             ccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence                                   111223457889999999999964   899999999999999754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-39  Score=300.08  Aligned_cols=280  Identities=14%  Similarity=0.171  Sum_probs=223.1

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC---Cc---eeeeccCccCCeEEEEECCCCcEEEEeeCCCeEE
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET---GD---WIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~---~~---~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~   86 (350)
                      .+|.++|++++|+|  .++.+||+|+.|++|+|||..+   +.   ....+ +|...|.+++|++++.++++++.||+|+
T Consensus        60 ~~h~~~V~~~~~s~--~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~  136 (437)
T 3gre_A           60 ENEPNSITSSAVSP--GETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQII  136 (437)
T ss_dssp             TTTTSCEEEEEEEC--SSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             cCCCCceEEEEECC--CCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence            78999999999984  2788999999999999999866   43   22233 5999999999999999999999999999


Q ss_pred             EeeCC---CCCeeeeee-------------ccccEeEEE--EcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecC-CCCc
Q 018784           87 LWDAL---TGDEKHSFE-------------HKHIVRACA--FSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN-SSGS  147 (350)
Q Consensus        87 vWd~~---~~~~~~~~~-------------h~~~V~~~~--~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~-~~~~  147 (350)
                      +||+.   +++......             +...+.++.  +++++.+|++|+.|+.|++||+.+.......... |.+.
T Consensus       137 vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~  216 (437)
T 3gre_A          137 VLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGA  216 (437)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCC
T ss_pred             EEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCc
Confidence            99984   554433322             344566666  5678999999999999999999876544333332 7789


Q ss_pred             EEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec--CCCCeEEEEEe----cCCcEEEEE-cCCcEEEEECCCcce
Q 018784          148 IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--TKSPVTSAEVS----RDGRYITTA-DGSSVKFWDANHFGL  220 (350)
Q Consensus       148 v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~----~~~~~l~~~-~~~~i~vwd~~~~~~  220 (350)
                      |.+++|++ ++.++++|+.||+|++||+++++++..+.  +..++.+++++    +++.+++++ .|+.|++||+++..+
T Consensus       217 v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~  295 (437)
T 3gre_A          217 VSSICIDE-ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHC  295 (437)
T ss_dssp             EEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEE
T ss_pred             eEEEEECC-CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcE
Confidence            99999975 47788899999999999999999988774  45689999665    467677666 578999999998887


Q ss_pred             eeeeecCCC---------------------------CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecC-----
Q 018784          221 VKGYNMPCN---------------------------TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG-----  268 (350)
Q Consensus       221 ~~~~~~~~~---------------------------~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~-----  268 (350)
                      +..+..+..                           ...+.+.  .+++|++|+.|+.|++||+.+++....+.+     
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~  373 (437)
T 3gre_A          296 QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS--NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFS  373 (437)
T ss_dssp             EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE--TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CC
T ss_pred             EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC--CceEEEecCCCCeEEEEECCCcccceEEecccccC
Confidence            766653211                           1223333  458999999999999999998887666554     


Q ss_pred             --------------------------------CCcCEEEEEEcCC--CCEEEEecCCCcEEEec
Q 018784          269 --------------------------------HHGPVHCVRFSPG--GESYASGSEDGTIRIWQ  298 (350)
Q Consensus       269 --------------------------------h~~~v~~l~~sp~--~~~lasgs~Dg~v~vw~  298 (350)
                                                      |...|++++|+++  +.+|+||+.||.|+||+
T Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          374 DVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             CEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence                                            8899999999988  78999999999999995

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=6.5e-40  Score=291.91  Aligned_cols=250  Identities=18%  Similarity=0.230  Sum_probs=192.2

Q ss_pred             EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc--eeeeccCccCCeEEEEECC--CCcEEEEeeCCCeEE
Q 018784           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDA--NALFSASGSADFTAK   86 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~--~~~~l~gH~~~V~~v~~~~--~~~~l~s~s~Dg~v~   86 (350)
                      ++.||+++|++++|+|   +|++||+||.|++|+|||+.+++  ++.+|.+|.+.|++++|++  ++.+|+||+.|++|+
T Consensus         8 ~~~~H~~~V~~v~~s~---~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~   84 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDY---YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI   84 (316)
T ss_dssp             ------CCEEEEEECG---GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred             ecccccCeEEEeeEcC---CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence            4579999999999997   99999999999999999998764  5678999999999999975  489999999999999


Q ss_pred             EeeCCCCC--eeeee-eccccEeEEEEcCC--CCeEEEeeCCCeEEEEECCCCCCC--CeeecCCCCcEEEEEEeCCC--
Q 018784           87 LWDALTGD--EKHSF-EHKHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDAP--PREVGNSSGSIRTVAWLHSD--  157 (350)
Q Consensus        87 vWd~~~~~--~~~~~-~h~~~V~~~~~~~~--~~~l~sg~~d~~v~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~--  157 (350)
                      +||+.++.  ....+ .|...|.+++|+|+  +.+|++|+.|++|++||+......  ......|...+.+++|.+..  
T Consensus        85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            99998764  33333 58899999999998  789999999999999998754221  22335677788889888652  


Q ss_pred             --------------CcEEEEEeCCCeEEEEECCCC---ceeEeecC-CCCeEEEEEecCCcEEEEEcCCcEEEEECCCcc
Q 018784          158 --------------QTILSSCTDSGGVRLWDARSG---KIVQTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDANHFG  219 (350)
Q Consensus       158 --------------~~~~~s~~~dg~i~iwd~~~~---~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~  219 (350)
                                    +.++++|+.|++|++||++.+   +++..+.. ...|.+++|+|++.+                  
T Consensus       165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~------------------  226 (316)
T 3bg1_A          165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGL------------------  226 (316)
T ss_dssp             ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSC------------------
T ss_pred             ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCC------------------
Confidence                          357889999999999999755   34555553 457888888886400                  


Q ss_pred             eeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccC---e-eEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEE
Q 018784          220 LVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG---E-QIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIR  295 (350)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~---~-~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~  295 (350)
                                         .+.+|++|+.|++|++||+.+.   . ....+..|...|++++|+|++++||+|+.|+.|+
T Consensus       227 -------------------~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~  287 (316)
T 3bg1_A          227 -------------------PTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVT  287 (316)
T ss_dssp             -------------------SCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEE
T ss_pred             -------------------CCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEE
Confidence                               1245556666666666665442   1 1123456888999999999999999999999999


Q ss_pred             EecCC
Q 018784          296 IWQTN  300 (350)
Q Consensus       296 vw~~~  300 (350)
                      ||+..
T Consensus       288 lw~~~  292 (316)
T 3bg1_A          288 LWKES  292 (316)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99864

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4.1e-39  Score=296.97  Aligned_cols=310  Identities=15%  Similarity=0.175  Sum_probs=242.6

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH   97 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~   97 (350)
                      .++.++|+|   +|.+|++|+.|+++++|+..+++....+.+| ..+....+++++.++++|+.||.|++||+.++....
T Consensus        58 ~~~~~~~s~---~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  133 (420)
T 3vl1_A           58 AGKGNTFEK---VGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE  133 (420)
T ss_dssp             CCTTCEEEE---EETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE
T ss_pred             cccceeeee---cCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee
Confidence            344788887   9999999999999999999998888888877 444555789999999999999999999999888777


Q ss_pred             ee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECC
Q 018784           98 SF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR  176 (350)
Q Consensus        98 ~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~  176 (350)
                      .+ .|...|.+++|+|++++|++|+.|++|++||+.++... .....|...|.+++|++ ++.++++++.|++|++||++
T Consensus       134 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~  211 (420)
T 3vl1_A          134 IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP-RTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECG  211 (420)
T ss_dssp             ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC-EEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETT
T ss_pred             ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc-eEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECC
Confidence            75 69999999999999999999999999999999876544 44567889999999986 46677899999999999999


Q ss_pred             CCceeEeecC----CCCeEEEE---------------------EecCCcEEEEE-cCCcEEEEECCCcceeeeeecC--C
Q 018784          177 SGKIVQTLET----KSPVTSAE---------------------VSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMP--C  228 (350)
Q Consensus       177 ~~~~~~~~~~----~~~v~~~~---------------------~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~--~  228 (350)
                      +++.+..+..    ...+.++.                     |+|++++++++ .++.|++||+++...+..+...  .
T Consensus       212 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~  291 (420)
T 3vl1_A          212 TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTC  291 (420)
T ss_dssp             TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSS
T ss_pred             CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCC
Confidence            9998888763    23444444                     46788877655 6889999999988776665432  2


Q ss_pred             CCceeEecCCCCcEEEEecCCCeEEEEEcccCee-EEeecC-CCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCccc
Q 018784          229 NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ-IGCNKG-HHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEE  306 (350)
Q Consensus       229 ~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~-~~~~~~-h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~  306 (350)
                      ....+.+.+....+|++|+.|+.|++||+++++. +..+.+ |...|.++.+ |++.+|++++.|+.|++|++..+....
T Consensus       292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~  370 (420)
T 3vl1_A          292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESER  370 (420)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCS
T ss_pred             CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCc
Confidence            3445666665444999999999999999998754 666665 6777888865 577899999999999999987643322


Q ss_pred             CCCCCCCccccccccccccceeeeeeEEEcccch
Q 018784          307 NHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGK  340 (350)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~  340 (350)
                      .......      ......+...|..+.++|+|+
T Consensus       371 ~~~~~~~------~~~~~~~~~~v~~~~~s~~~~  398 (420)
T 3vl1_A          371 PAIEFET------PTFLVSNDDAVSQFCYVSDDE  398 (420)
T ss_dssp             CEECTTS------CEEECCSSCCCCEEEEECCSS
T ss_pred             cceeccC------ccEEccCCcceEEEEEccCCC
Confidence            1111000      011223455677888888887

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-39  Score=321.47  Aligned_cols=204  Identities=13%  Similarity=0.115  Sum_probs=178.3

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      ..||.+.|++++|+|   +|++||+|+.|++|+||+..+.+....+. |...|.+++|++ +.+|++++.|++|++||+.
T Consensus        13 ~~gh~~~V~~lafsp---dg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~   87 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDF---TQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY   87 (902)
T ss_dssp             EEECSSCEEEEEEET---TTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETT
T ss_pred             ccCCCCCcEEEEECC---CCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECC
Confidence            369999999999997   99999999999999999998887766654 888999999999 8899999999999999999


Q ss_pred             CCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC----------eeecCCCCcEEEEEEeCCCCcEE
Q 018784           92 TGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP----------REVGNSSGSIRTVAWLHSDQTIL  161 (350)
Q Consensus        92 ~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~  161 (350)
                      +++.+..+.|...|.+++|+|++++|++|+.|++|++||+.+.....          .....|.+.|.+++|+|.+...+
T Consensus        88 ~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l  167 (902)
T 2oaj_A           88 SQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV  167 (902)
T ss_dssp             TCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred             CCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence            99988888888999999999999999999999999999998654311          12245778999999998777788


Q ss_pred             EEEeCCCeEEEEECCCCceeEeecCC-------------------CCeEEEEEecCCcEEEEE-cCCcEEEEECCCccee
Q 018784          162 SSCTDSGGVRLWDARSGKIVQTLETK-------------------SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLV  221 (350)
Q Consensus       162 ~s~~~dg~i~iwd~~~~~~~~~~~~~-------------------~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~  221 (350)
                      ++|+.|++| +||+++++++..+..+                   ..|.+++|+|+|++|+++ .|+.|++||+++.+++
T Consensus       168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~  246 (902)
T 2oaj_A          168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI  246 (902)
T ss_dssp             EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred             EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence            899999999 9999999988877654                   579999999999987665 6899999999876654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.6e-38  Score=280.07  Aligned_cols=304  Identities=18%  Similarity=0.273  Sum_probs=248.1

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCC
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG   93 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~   93 (350)
                      -|.++|.+++|+|   ||++++++..++.+.+|............+|.+.|.+++|++++.++++++ ||.|++||+.++
T Consensus         7 ~~~~~v~~~~~s~---dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~   82 (337)
T 1gxr_A            7 MGSKPAYSFHVTA---DGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHP   82 (337)
T ss_dssp             EEEEECCEEEECS---SSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTST
T ss_pred             ccCCceeEEEECC---CCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCC
Confidence            4677899999987   999999998888887776655444445558999999999999999999998 999999999876


Q ss_pred             Ceee---ee---eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCC-CeeecCCCCcEEEEEEeCCCCcEEEEEeC
Q 018784           94 DEKH---SF---EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP-PREVGNSSGSIRTVAWLHSDQTILSSCTD  166 (350)
Q Consensus        94 ~~~~---~~---~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~s~~~  166 (350)
                      ....   .+   .|...|.+++|+|++++|++++.|+.|++||+..+... ......+...+.+++|.+ ++.++++++.
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~  161 (337)
T 1gxr_A           83 GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCS  161 (337)
T ss_dssp             TCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEET
T ss_pred             CceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC-CCCEEEEEeC
Confidence            5322   22   58889999999999999999999999999999865532 234456778899999986 5667788899


Q ss_pred             CCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEE
Q 018784          167 SGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFI  244 (350)
Q Consensus       167 dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (350)
                      |+.|++||+++++.+..+.. ...+.+++|+|++++++++ .++.|++||+++...+..+........+.+.+ ++++++
T Consensus       162 dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~  240 (337)
T 1gxr_A          162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP-TGEWLA  240 (337)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECT-TSSEEE
T ss_pred             CCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECC-CCCEEE
Confidence            99999999999998888874 5789999999999877654 68899999999988887777665566666666 578999


Q ss_pred             EecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccc
Q 018784          245 AGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTD  324 (350)
Q Consensus       245 sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (350)
                      +++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++.||.|++|++........                .
T Consensus       241 ~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~----------------~  303 (337)
T 1gxr_A          241 VGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ----------------S  303 (337)
T ss_dssp             EEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE----------------E
T ss_pred             EEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE----------------e
Confidence            9999999999999987754 5678999999999999999999999999999999876543211                1


Q ss_pred             cceeeeeeEEEcccch
Q 018784          325 EVTRKIEGFHINKEGK  340 (350)
Q Consensus       325 ~~~~~i~~~~~~~~g~  340 (350)
                      .+...|.++.++|+|+
T Consensus       304 ~~~~~v~~~~~s~~~~  319 (337)
T 1gxr_A          304 KESSSVLSCDISVDDK  319 (337)
T ss_dssp             ECSSCEEEEEECTTSC
T ss_pred             cCCCcEEEEEECCCCC
Confidence            2345567777788775

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.4e-38  Score=288.06  Aligned_cols=286  Identities=16%  Similarity=0.231  Sum_probs=237.3

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccC-ccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-HKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~g-H~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      .+|.+.+....+++   ++..+++++.|++|++|+..+++....+.. |...|.+++|++++.++++|+.||.|++||+.
T Consensus        88 ~~~~~~~~~~~~~~---s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  164 (401)
T 4aez_A           88 PGIIDDYYLNLLDW---SNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE  164 (401)
T ss_dssp             TTCCCCTTCBCEEE---CTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCcCCceEEEEee---cCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence            37776655433332   234578889999999999999999887776 89999999999999999999999999999999


Q ss_pred             CCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784           92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (350)
Q Consensus        92 ~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i  170 (350)
                      +++....+ .|...|.+++|  ++.+|++|+.|+.|++||+............|.+.|.+++|++ ++.++++|+.|++|
T Consensus       165 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v  241 (401)
T 4aez_A          165 SQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVV  241 (401)
T ss_dssp             TCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred             CCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeE
Confidence            98877776 58899999999  4679999999999999999865555556677899999999986 66788899999999


Q ss_pred             EEEECCCCceeEeec-CCCCeEEEEEecCC-cEEEEEc---CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEE
Q 018784          171 RLWDARSGKIVQTLE-TKSPVTSAEVSRDG-RYITTAD---GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA  245 (350)
Q Consensus       171 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~---~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  245 (350)
                      ++||+++++.+..+. +...+.+++|+|++ .+++++.   ++.|++||+++...+..+........+.+.+ +++++++
T Consensus       242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~  320 (401)
T 4aez_A          242 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSP-HSKEIMS  320 (401)
T ss_dssp             EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECS-SSSEEEE
T ss_pred             EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECC-CCCeEEE
Confidence            999999998888776 45789999999976 5666553   8999999999998888887666666667766 4677777


Q ss_pred             --ecCCCeEEEEEcccCeeEE--eecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784          246 --GGEDMWVHVFDFHTGEQIG--CNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       246 --g~~d~~i~v~d~~~~~~~~--~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~  305 (350)
                        |+.|+.|++||+.++....  .+.+|...|.+++|+|++++|++++.||.|++|++...+..
T Consensus       321 ~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          321 THGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV  384 (401)
T ss_dssp             EECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred             EeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence              6689999999999876544  46799999999999999999999999999999999766544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.1e-37  Score=291.46  Aligned_cols=283  Identities=19%  Similarity=0.309  Sum_probs=236.0

Q ss_pred             eEeeccCCce-eEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEe
Q 018784           10 LVCHGHSRPV-VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (350)
Q Consensus        10 ~~~~gH~~~v-~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vW   88 (350)
                      ..++||..+| .++.|     ++.+|++|+.|++|++||..+++.+..+.+|.+.|.+++|++++ ++++|+.||+|++|
T Consensus       115 ~~l~~h~~~v~~~~~~-----~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw  188 (464)
T 3v7d_B          115 TTLRGHMTSVITCLQF-----EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW  188 (464)
T ss_dssp             EEEECCSSSCEEEEEE-----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred             EEEcCCCCCcEEEEEE-----CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence            3568999986 55555     45699999999999999999999999999999999999999888 88999999999999


Q ss_pred             eCCCCCeeeeee-ccccEeEEEEc--CCCCeEEEeeCCCeEEEEECCCCCCCC----------------------eeecC
Q 018784           89 DALTGDEKHSFE-HKHIVRACAFS--EDTHLLLTGGFEKILRIFDLNRPDAPP----------------------REVGN  143 (350)
Q Consensus        89 d~~~~~~~~~~~-h~~~V~~~~~~--~~~~~l~sg~~d~~v~vwd~~~~~~~~----------------------~~~~~  143 (350)
                      |+.+++....+. |...|.+++|+  +++.+|++|+.|++|++||+.+.....                      .....
T Consensus       189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (464)
T 3v7d_B          189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  268 (464)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred             ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence            999998877775 89999999998  578999999999999999998654321                      23345


Q ss_pred             CCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCccee
Q 018784          144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLV  221 (350)
Q Consensus       144 ~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~  221 (350)
                      |...+.++.   +++.++++++.|++|++||+++++++..+.. ...+.+++|+|++++++++ .|+.|++||+++..++
T Consensus       269 ~~~~v~~~~---~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~  345 (464)
T 3v7d_B          269 HMASVRTVS---GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM  345 (464)
T ss_dssp             CSSCEEEEE---EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             ccceEEEEc---CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence            666777764   3566888999999999999999999888874 5789999999999877655 6899999999999888


Q ss_pred             eeeecCCCCce-eEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          222 KGYNMPCNTES-ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       222 ~~~~~~~~~~~-~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      ..+..+..... +.+.   +.++++|+.|+.|++||+.++...... .|...+..++|+|++.++++|+ |+.|++||+.
T Consensus       346 ~~~~~h~~~v~~~~~~---~~~l~s~s~dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~  420 (464)
T 3v7d_B          346 YTLQGHTALVGLLRLS---DKFLVSAAADGSIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLR  420 (464)
T ss_dssp             EEECCCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETT
T ss_pred             EEEeCCCCcEEEEEEc---CCEEEEEeCCCcEEEEECCCCceeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECC
Confidence            87765544332 3332   689999999999999999988765544 3666788899999999999999 9999999998


Q ss_pred             CCCccc
Q 018784          301 PPNHEE  306 (350)
Q Consensus       301 ~~~~~~  306 (350)
                      ..+...
T Consensus       421 ~g~~~~  426 (464)
T 3v7d_B          421 SGKLVH  426 (464)
T ss_dssp             TCCEEE
T ss_pred             CCcEEe
Confidence            776654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.6e-38  Score=284.82  Aligned_cols=245  Identities=18%  Similarity=0.171  Sum_probs=200.6

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeee----ccCccCCeEEEEECCCCcEEEEeeCCCeEEEe
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT----FEGHKGAVWSCCLDANALFSASGSADFTAKLW   88 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~----l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vW   88 (350)
                      ..|..+|.+++|+|   ++ .|++|+.|++|+|||+.+++.+..    +.+|.+.|++++|++++.+|+||+.|++|++|
T Consensus        79 ~~~~~~v~~~~~s~---d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iw  154 (344)
T 4gqb_B           79 VQTEAGVADLTWVG---ER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVW  154 (344)
T ss_dssp             EEESSCEEEEEEET---TT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eccCCCEEEEEEeC---CC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            45778999999996   64 678999999999999998876543    45899999999999999999999999999999


Q ss_pred             eCCCCCeeeee-eccccEeEEEEcCCCC-eEEEeeCCCeEEEEECCCCCCCCeee-cCCCCcEEEEEEeCCCCcEEEEEe
Q 018784           89 DALTGDEKHSF-EHKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSCT  165 (350)
Q Consensus        89 d~~~~~~~~~~-~h~~~V~~~~~~~~~~-~l~sg~~d~~v~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~s~~  165 (350)
                      |+.+++.+..+ .|...|.+++|+|++. +|++++.|++|++||+.+++...... ..+...+.+++|.+.+..++++|+
T Consensus       155 d~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~  234 (344)
T 4gqb_B          155 DLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD  234 (344)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE
T ss_pred             ECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec
Confidence            99999888777 4999999999999884 78999999999999998765433322 234556889999988889999999


Q ss_pred             CCCeEEEEECCCCceeEeecC-CCCeEEEEEecCC-cEEE-EEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcE
Q 018784          166 DSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDG-RYIT-TADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNI  242 (350)
Q Consensus       166 ~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~-~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (350)
                      .|++|++||+++++++..+.. ...|++++|+|++ ++|+ ++.|+.|++||+++.++++..........+.+.|....+
T Consensus       235 ~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~l  314 (344)
T 4gqb_B          235 ENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSL  314 (344)
T ss_dssp             TTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTE
T ss_pred             cCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeE
Confidence            999999999999999888875 5689999999997 4555 557899999999988766533223334566777766678


Q ss_pred             EEEecCCCeEEEEEcccCe
Q 018784          243 FIAGGEDMWVHVFDFHTGE  261 (350)
Q Consensus       243 l~sg~~d~~i~v~d~~~~~  261 (350)
                      |++|+.|++|++|++.+..
T Consensus       315 las~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          315 LTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             EEEEETTSCEEEEECCC--
T ss_pred             EEEEcCCCeEEEEECCCCC
Confidence            8999999999999987643

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.4e-37  Score=279.72  Aligned_cols=273  Identities=18%  Similarity=0.317  Sum_probs=223.3

Q ss_pred             ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEE
Q 018784           52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFD  130 (350)
Q Consensus        52 ~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd  130 (350)
                      +...+|.||.+.|++++|+|++.+++|||.||+|++||..+++....+ .|...|.+++|+|++.+|++|+.|+.+++|+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            566789999999999999999999999999999999999888876665 4777899999999999999999999999999


Q ss_pred             CCCCCC-----CCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEec--CCcEE
Q 018784          131 LNRPDA-----PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSR--DGRYI  202 (350)
Q Consensus       131 ~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~--~~~~l  202 (350)
                      +.....     .......|.+.+.++.|.+. +..+++++.|++|++||+++++++..+.. ...+.++.++|  ++.++
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l  213 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNS-DMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF  213 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence            864321     22344568889999999864 55677889999999999999999888875 46788999987  45565


Q ss_pred             E-EEcCCcEEEEECCCcceeeeeecCCCC-ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCC--CcCEEEEEE
Q 018784          203 T-TADGSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGH--HGPVHCVRF  278 (350)
Q Consensus       203 ~-~~~~~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h--~~~v~~l~~  278 (350)
                      + ++.|+.|++||+++..++..+..+... ..+.+.| ++++|++|+.|++|++||++.++.+..+..+  ...+.+++|
T Consensus       214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~  292 (354)
T 2pbi_B          214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDF  292 (354)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEE
Confidence            5 557899999999999888777655443 3455655 5789999999999999999998877666543  457899999


Q ss_pred             cCCCCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccchh
Q 018784          279 SPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKA  341 (350)
Q Consensus       279 sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~  341 (350)
                      +|++++|++|+.|+.|++||+.......               ....+...|.++.++|||+.
T Consensus       293 s~~g~~l~~g~~d~~i~vwd~~~~~~~~---------------~l~~h~~~v~~l~~spdg~~  340 (354)
T 2pbi_B          293 SLSGRLLFAGYNDYTINVWDVLKGSRVS---------------ILFGHENRVSTLRVSPDGTA  340 (354)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCSEEE---------------EECCCSSCEEEEEECTTSSC
T ss_pred             eCCCCEEEEEECCCcEEEEECCCCceEE---------------EEECCCCcEEEEEECCCCCE
Confidence            9999999999999999999986543322               22345567888889998863

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.3e-38  Score=286.71  Aligned_cols=267  Identities=12%  Similarity=0.166  Sum_probs=196.8

Q ss_pred             CccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeC------CCeEEEeeCCCCCee-----ee
Q 018784           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA------DFTAKLWDALTGDEK-----HS   98 (350)
Q Consensus        30 dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~------Dg~v~vWd~~~~~~~-----~~   98 (350)
                      ++.+ +.++.+.....|++...    ...+|+..|++++|+|||.+|||||.      |++|++|+..++...     ..
T Consensus        16 ~~~~-~~~~g~~~~~~w~~p~~----~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~   90 (357)
T 4g56_B           16 ENLY-FQSNGSSKGSAWGRPVT----APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAG   90 (357)
T ss_dssp             -----------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEE
T ss_pred             cceE-EecCCCccccccCCCCC----CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEeccc
Confidence            4434 44555677889986543    34579999999999999999999998      788999998766533     23


Q ss_pred             eeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC---eeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEEC
Q 018784           99 FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP---REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (350)
Q Consensus        99 ~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~  175 (350)
                      ..|...|.+++|+|++. +++++.|++|++||+.+++...   .....|...|.+++|++ ++.++++|+.|++|++||+
T Consensus        91 ~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~  168 (357)
T 4g56_B           91 VQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDL  168 (357)
T ss_dssp             EECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEET
T ss_pred             CCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEEC
Confidence            46888999999999986 5567889999999997665432   22346888999999986 5667889999999999999


Q ss_pred             CCCceeEeecC-CCCeEEEEEecCCc--EEEEEcCCcEEEEECCCcceeeeeecCC---CCceeEecCCCCcEEEEecCC
Q 018784          176 RSGKIVQTLET-KSPVTSAEVSRDGR--YITTADGSSVKFWDANHFGLVKGYNMPC---NTESASLEPKLGNIFIAGGED  249 (350)
Q Consensus       176 ~~~~~~~~~~~-~~~v~~~~~~~~~~--~l~~~~~~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~sg~~d  249 (350)
                      ++++++..+.. ...+++++|++++.  +++++.|+.|++||+++.+....+....   ....+.+.|..+.+|++|+.|
T Consensus       169 ~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d  248 (357)
T 4g56_B          169 SQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDET  248 (357)
T ss_dssp             TTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESS
T ss_pred             CCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecc
Confidence            99999988875 56899999999864  4566779999999999887766554332   234567777778899999999


Q ss_pred             CeEEEEEcccCeeEEeecCCCcCEEEEEEcCCC-CEEEEecCCCcEEEecCCCCC
Q 018784          250 MWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGG-ESYASGSEDGTIRIWQTNPPN  303 (350)
Q Consensus       250 ~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~-~~lasgs~Dg~v~vw~~~~~~  303 (350)
                      +.|++||+++++.+..+.+|...|++++|+|++ ++||+|+.|++|+|||+...+
T Consensus       249 ~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~  303 (357)
T 4g56_B          249 GNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE  303 (357)
T ss_dssp             SCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred             cceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence            999999999999999999999999999999987 679999999999999987554

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.9e-37  Score=285.87  Aligned_cols=279  Identities=11%  Similarity=0.115  Sum_probs=226.5

Q ss_pred             eeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeee
Q 018784           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS   98 (350)
Q Consensus        19 v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~   98 (350)
                      +...+|+   +++++||+|+.|++|+|||..+++....+.+|.+.|.+++|+|++.++++++.|++|++||+.+++....
T Consensus       100 ~~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  176 (420)
T 3vl1_A          100 TAVDTAK---LQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT  176 (420)
T ss_dssp             EEEEEEC---SSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEE
T ss_pred             eEEEEEe---cCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceE
Confidence            3334455   5999999999999999999999999999999999999999999999999999999999999998887776


Q ss_pred             e-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeec--CCCCcEEEEEEeC--------------------
Q 018784           99 F-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG--NSSGSIRTVAWLH--------------------  155 (350)
Q Consensus        99 ~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~--------------------  155 (350)
                      + .|...|.+++|+|++.+|++++.|++|++||+.++........  .+...+.++++.+                    
T Consensus       177 ~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s  256 (420)
T 3vl1_A          177 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG  256 (420)
T ss_dssp             EECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS
T ss_pred             EcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc
Confidence            6 4899999999999999999999999999999986543322221  3456677776642                    


Q ss_pred             CCCcEEEEEeCCCeEEEEECCCCceeEeecC--CCCeEEEEEecCCc-EEEE-EcCCcEEEEECCCcce-eeeeec-CCC
Q 018784          156 SDQTILSSCTDSGGVRLWDARSGKIVQTLET--KSPVTSAEVSRDGR-YITT-ADGSSVKFWDANHFGL-VKGYNM-PCN  229 (350)
Q Consensus       156 ~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~-~l~~-~~~~~i~vwd~~~~~~-~~~~~~-~~~  229 (350)
                      +++.++++++.||.|++||+++++.+..+..  ...+.+++|+|++. ++++ +.++.|++||+++... +..+.. +..
T Consensus       257 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~  336 (420)
T 3vl1_A          257 TYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGT  336 (420)
T ss_dssp             CTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTS
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCC
Confidence            4667889999999999999999988777653  46899999999997 6554 5689999999998643 455544 233


Q ss_pred             CceeEecCCCCcEEEEecCCCeEEEEEcccCe---------eEEeecCCCcCEEEEEEcCCCC---EEEEecCCCcEEEe
Q 018784          230 TESASLEPKLGNIFIAGGEDMWVHVFDFHTGE---------QIGCNKGHHGPVHCVRFSPGGE---SYASGSEDGTIRIW  297 (350)
Q Consensus       230 ~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~---------~~~~~~~h~~~v~~l~~sp~~~---~lasgs~Dg~v~vw  297 (350)
                      .....+.+ ++++|++++.|+.|++||+....         ....+.+|...|.+++|+|+++   .+++.+.+|.+.+|
T Consensus       337 ~v~~~~~~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~  415 (420)
T 3vl1_A          337 PINNVYFA-AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALY  415 (420)
T ss_dssp             CEEEEEEE-TTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEE
T ss_pred             CceEEEeC-CCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEE
Confidence            33333444 57899999999999999987632         2234567889999999999999   67777788999999


Q ss_pred             cCCC
Q 018784          298 QTNP  301 (350)
Q Consensus       298 ~~~~  301 (350)
                      ++..
T Consensus       416 ~~~~  419 (420)
T 3vl1_A          416 NLSN  419 (420)
T ss_dssp             ESCC
T ss_pred             eccC
Confidence            9854

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1e-37  Score=278.14  Aligned_cols=243  Identities=25%  Similarity=0.329  Sum_probs=209.2

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      ++||..+|.+++|+|   +|.+|++|+.|++|+|||+.+++.+..+.+|...|.+++|++++.+++||+.|++|++||+.
T Consensus        61 ~~~h~~~v~~~~~s~---dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~  137 (319)
T 3frx_A           61 FKGHSHIVQDCTLTA---DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK  137 (319)
T ss_dssp             EECCSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred             EeCCcccEEEEEECC---CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            589999999999986   99999999999999999999999999999999999999999999999999999999999986


Q ss_pred             CCCeeeeeeccccEeEEEEcCC------CCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe
Q 018784           92 TGDEKHSFEHKHIVRACAFSED------THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (350)
Q Consensus        92 ~~~~~~~~~h~~~V~~~~~~~~------~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~  165 (350)
                      .........|...|.++.|+|.      +..|++++.|++|++||+.+... ......|...|.+++|+| ++.++++++
T Consensus       138 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~sp-~g~~l~s~~  215 (319)
T 3frx_A          138 GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI-EADFIGHNSNINTLTASP-DGTLIASAG  215 (319)
T ss_dssp             SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE-EEEECCCCSCEEEEEECT-TSSEEEEEE
T ss_pred             CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh-heeecCCCCcEEEEEEcC-CCCEEEEEe
Confidence            5444444579999999999985      44899999999999999976443 233456888999999985 567888999


Q ss_pred             CCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecC---------CCCceeEec
Q 018784          166 DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP---------CNTESASLE  236 (350)
Q Consensus       166 ~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~---------~~~~~~~~~  236 (350)
                      .|++|++||+++++++..+..+.++.+++|+|++.+++++.+..+++|++.....+..+...         .....+.+.
T Consensus       216 ~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  295 (319)
T 3frx_A          216 KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWS  295 (319)
T ss_dssp             TTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEEC
Confidence            99999999999999999999889999999999999999988888999999876665544321         112345555


Q ss_pred             CCCCcEEEEecCCCeEEEEEcccC
Q 018784          237 PKLGNIFIAGGEDMWVHVFDFHTG  260 (350)
Q Consensus       237 ~~~~~~l~sg~~d~~i~v~d~~~~  260 (350)
                      | ++++|++|+.|+.|++||+.++
T Consensus       296 p-dg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          296 A-DGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             T-TSSEEEEEETTSCEEEEEEEEC
T ss_pred             C-CCCEEEEeecCceEEEEEEeec
Confidence            5 6899999999999999998764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.8e-37  Score=288.08  Aligned_cols=276  Identities=19%  Similarity=0.303  Sum_probs=228.6

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~   92 (350)
                      .+|..+|.++.|     ++.+|++|+.|++|++||..+++....+.+|.+.|.++++  ++.++++|+.||+|++||+.+
T Consensus       130 ~~~~~~v~~~~~-----d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~  202 (435)
T 1p22_A          130 SETSKGVYCLQY-----DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT  202 (435)
T ss_dssp             CSSCCCEEEEEC-----CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred             cCCCCcEEEEEE-----CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCC
Confidence            367788988876     6789999999999999999999999999999999999988  788999999999999999999


Q ss_pred             CCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC--eeecCCCCcEEEEEEeCCCCcEEEEEeCCCe
Q 018784           93 GDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--REVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (350)
Q Consensus        93 ~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~  169 (350)
                      ++....+ .|...|.+++|++  .++++|+.|+.|++||+.++....  .....|...+.++++   ++..+++|+.|++
T Consensus       203 ~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~  277 (435)
T 1p22_A          203 GEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRT  277 (435)
T ss_dssp             CCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSE
T ss_pred             CcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCe
Confidence            9887776 5888999999974  589999999999999998765442  345678889999988   4568889999999


Q ss_pred             EEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecC
Q 018784          170 VRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE  248 (350)
Q Consensus       170 i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~  248 (350)
                      |++||+++++.+..+.. ...+.++.+++ ..+++++.|+.|++||+++..++..+..+........ . ++.++++|+.
T Consensus       278 i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~-~-~~~~l~sg~~  354 (435)
T 1p22_A          278 IKVWNTSTCEFVRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR-F-DNKRIVSGAY  354 (435)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE-C-CSSEEEEEET
T ss_pred             EEEEECCcCcEEEEEcCCCCcEEEEEeCC-CEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEE-e-cCCEEEEEeC
Confidence            99999999999888875 46788888843 3445556789999999999888877765443332222 2 5789999999


Q ss_pred             CCeEEEEEcccCe---------eEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784          249 DMWVHVFDFHTGE---------QIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       249 d~~i~v~d~~~~~---------~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~  305 (350)
                      |+.|++||+.++.         .+..+.+|.+.|.+++|  ++.+|++|+.||.|++||+......
T Consensus       355 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~  418 (435)
T 1p22_A          355 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAA  418 (435)
T ss_dssp             TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-------
T ss_pred             CCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCc
Confidence            9999999998776         78888999999999999  7789999999999999998765443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=5.3e-37  Score=285.63  Aligned_cols=306  Identities=25%  Similarity=0.406  Sum_probs=245.4

Q ss_pred             ccceeEeeccCCce-eEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCe
Q 018784            6 VAVPLVCHGHSRPV-VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFT   84 (350)
Q Consensus         6 ~~~~~~~~gH~~~v-~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~   84 (350)
                      +..+.++.||.+.| .++.|     +|.+|++|+.|++|++||..+++++..+.+|.+.|++++++  +.++++|+.||+
T Consensus       108 ~~~~~~l~~h~~~v~~~~~~-----~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~  180 (445)
T 2ovr_B          108 LKSPKVLKGHDDHVITCLQF-----CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRT  180 (445)
T ss_dssp             CCCCEEEECSTTSCEEEEEE-----ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSC
T ss_pred             cceeEEecccCCCcEEEEEE-----cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCe
Confidence            34456679999986 44433     57899999999999999999999999999999999999997  679999999999


Q ss_pred             EEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEE
Q 018784           85 AKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (350)
Q Consensus        85 v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s  163 (350)
                      |++||+.+++....+ .|...|.+++|+  +..+++|+.|++|++||+.++.. ......|...+.++.+   ++..+++
T Consensus       181 i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~---~~~~l~~  254 (445)
T 2ovr_B          181 LKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQC-LHVLMGHVAAVRCVQY---DGRRVVS  254 (445)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCE-EEEEECCSSCEEEEEE---CSSCEEE
T ss_pred             EEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcE-EEEEcCCcccEEEEEE---CCCEEEE
Confidence            999999998877766 488899999995  56799999999999999986543 3344568889999988   4567888


Q ss_pred             EeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEE-EEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCc
Q 018784          164 CTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGN  241 (350)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (350)
                      ++.|++|++||+++++++..+.. ...+.++.+  ++.+++ ++.++.|++||+++...+..+..+..... .+.+ .++
T Consensus       255 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~-~~~~-~~~  330 (445)
T 2ovr_B          255 GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-GMEL-KDN  330 (445)
T ss_dssp             EETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEE-EEEE-ETT
T ss_pred             EcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEE-EEEE-eCC
Confidence            99999999999999999888874 467888888  555554 55689999999999888877665433322 2222 468


Q ss_pred             EEEEecCCCeEEEEEcccCeeEEeecC---CCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccc
Q 018784          242 IFIAGGEDMWVHVFDFHTGEQIGCNKG---HHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGK  318 (350)
Q Consensus       242 ~l~sg~~d~~i~v~d~~~~~~~~~~~~---h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~  318 (350)
                      ++++|+.|+.|++||+.+++.+..+.+   |..+|.+++|+  +.+|++|+.||.|++||+...+......         
T Consensus       331 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~---------  399 (445)
T 2ovr_B          331 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLV---------  399 (445)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE---------
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeee---------
Confidence            999999999999999999999888876   88999999996  5799999999999999987655432210         


Q ss_pred             cccccccceeeeeeEEEcccch
Q 018784          319 LKASTDEVTRKIEGFHINKEGK  340 (350)
Q Consensus       319 ~~~~~~~~~~~i~~~~~~~~g~  340 (350)
                       ......+...|.++.++|+|.
T Consensus       400 -~~~~~~~~~~v~~~~~s~~~~  420 (445)
T 2ovr_B          400 -TLESGGSGGVVWRIRASNTKL  420 (445)
T ss_dssp             -ECTTGGGTCEEEEEEECSSEE
T ss_pred             -ccccCCCCceEEEEEecCCEE
Confidence             011134455667777777664

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.2e-37  Score=323.89  Aligned_cols=285  Identities=28%  Similarity=0.503  Sum_probs=250.4

Q ss_pred             eEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (350)
Q Consensus        10 ~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd   89 (350)
                      +++.+|.+.|++++|+|   +|++||+|+.|++|+|||..+++.+.++.+|.+.|.+++|+|++.++++++.||+|++||
T Consensus       609 ~~~~~h~~~v~~~~~s~---~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd  685 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQ---DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD  685 (1249)
T ss_dssp             EEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EEEecccccEEEEEECC---CCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence            34689999999999987   999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeeee-eccccEeEEEEcC--CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeC
Q 018784           90 ALTGDEKHSF-EHKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD  166 (350)
Q Consensus        90 ~~~~~~~~~~-~h~~~V~~~~~~~--~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~  166 (350)
                      +.+++....+ .|...|.+++|+|  ++.++++|+.|+.|++||+.++.. ......|.+.|.+++|++ ++.++++++.
T Consensus       686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-~~~~~~h~~~v~~~~~sp-~~~~l~s~s~  763 (1249)
T 3sfz_A          686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC-RNTMFGHTNSVNHCRFSP-DDELLASCSA  763 (1249)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-EEEECCCSSCEEEEEECS-STTEEEEEES
T ss_pred             CCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-hheecCCCCCEEEEEEec-CCCEEEEEEC
Confidence            9999887776 5889999999999  556899999999999999987553 334457888999999986 5668889999


Q ss_pred             CCeEEEEECCCCceeEeecCC--------------CCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecC--CCC
Q 018784          167 SGGVRLWDARSGKIVQTLETK--------------SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP--CNT  230 (350)
Q Consensus       167 dg~i~iwd~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~--~~~  230 (350)
                      ||+|++||+++++....+...              ..+.+++|+|++++++++.++.+.+||+.+...+..+...  ...
T Consensus       764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v  843 (1249)
T 3sfz_A          764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTI  843 (1249)
T ss_dssp             SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCC
T ss_pred             CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCce
Confidence            999999999998877665432              2577889999999999888999999999998877666432  233


Q ss_pred             ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          231 ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       231 ~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      ..+.+.+ ++.++++++.|+.|++||+.++..+..+.+|...|++++|+|++++|++++.|+.|++|++.
T Consensus       844 ~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~  912 (1249)
T 3sfz_A          844 QYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK  912 (1249)
T ss_dssp             CEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred             EEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence            4455555 68999999999999999999999999999999999999999999999999999999999964

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1e-37  Score=278.72  Aligned_cols=291  Identities=18%  Similarity=0.206  Sum_probs=216.8

Q ss_pred             eEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC----ceeeeccCccCCeEEEEECC--CCcEEEEeeCCC
Q 018784           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----DWIGTFEGHKGAVWSCCLDA--NALFSASGSADF   83 (350)
Q Consensus        10 ~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~----~~~~~l~gH~~~V~~v~~~~--~~~~l~s~s~Dg   83 (350)
                      .++.||+++|++++|+|   ++.+||+|+.|++|+||+..++    +....+.+|...|.+++|++  ++.++++++.||
T Consensus         5 ~~~~gH~~~v~~~~~~~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg   81 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDF---YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK   81 (351)
T ss_dssp             CEECCCSSCEEEEEECS---SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             ccCcccccceeEEEEcC---CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence            34689999999999987   9999999999999999999876    46778899999999999999  699999999999


Q ss_pred             eEEEeeCCCCC---------eeeee-eccccEeEEEEcCC--CCeEEEeeCCCeEEEEECCCCCCCCeee----------
Q 018784           84 TAKLWDALTGD---------EKHSF-EHKHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDAPPREV----------  141 (350)
Q Consensus        84 ~v~vWd~~~~~---------~~~~~-~h~~~V~~~~~~~~--~~~l~sg~~d~~v~vwd~~~~~~~~~~~----------  141 (350)
                      +|++||+.++.         ....+ .|...|.+++|+|+  +.+|++++.|+.|++||+.+........          
T Consensus        82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~  161 (351)
T 3f3f_A           82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI  161 (351)
T ss_dssp             CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred             eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence            99999998763         23333 58899999999999  9999999999999999998765433221          


Q ss_pred             --cCCCCcEEEEEEeCC--CCcEEEEEeCCCeEEEEECCCCce--eEeec-CCCCeEEEEEecCC----cEEEE-EcCCc
Q 018784          142 --GNSSGSIRTVAWLHS--DQTILSSCTDSGGVRLWDARSGKI--VQTLE-TKSPVTSAEVSRDG----RYITT-ADGSS  209 (350)
Q Consensus       142 --~~~~~~v~~~~~~~~--~~~~~~s~~~dg~i~iwd~~~~~~--~~~~~-~~~~v~~~~~~~~~----~~l~~-~~~~~  209 (350)
                        ..+...+.+++|.+.  ++.++++++.|+.+.+|+...++.  +..+. +...|.+++|+|++    +++++ +.|+.
T Consensus       162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~  241 (351)
T 3f3f_A          162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR  241 (351)
T ss_dssp             CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSC
T ss_pred             ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCe
Confidence              256778999999875  467888899999998888887764  44554 45789999999997    66654 56899


Q ss_pred             EEEEECCCcceeeeeecCCCCceeEecCCCCcE----EEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEE
Q 018784          210 VKFWDANHFGLVKGYNMPCNTESASLEPKLGNI----FIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESY  285 (350)
Q Consensus       210 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~l  285 (350)
                      |++||++..........................    ...+.....+.+|+....+.+..+.+|...|++++|+|++++|
T Consensus       242 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l  321 (351)
T 3f3f_A          242 IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTIL  321 (351)
T ss_dssp             EEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCE
T ss_pred             EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEE
Confidence            999999765433222111111111111111112    2233345566777777788888999999999999999999999


Q ss_pred             EEecCCCcEEEecCCCCC
Q 018784          286 ASGSEDGTIRIWQTNPPN  303 (350)
Q Consensus       286 asgs~Dg~v~vw~~~~~~  303 (350)
                      ++|+.||.|++|++....
T Consensus       322 ~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          322 SSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             EEEETTSCEEEEEECTTS
T ss_pred             EEecCCCcEEEEecCcCc
Confidence            999999999999987544

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=7.9e-37  Score=275.70  Aligned_cols=282  Identities=15%  Similarity=0.176  Sum_probs=227.1

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC-Ccee-eeccCccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWI-GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~-~~~~-~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd   89 (350)
                      +++|.++|++++|+|-..+|.+|++|+.|++|+||+..+ ++.+ ..+.+|.+.|.+++|++++.++++++.||.|++||
T Consensus        35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd  114 (368)
T 3mmy_A           35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD  114 (368)
T ss_dssp             SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEE
Confidence            579999999999998332379999999999999999987 5555 78899999999999999999999999999999999


Q ss_pred             CCCCCeeeeeeccccEeEEEE--cCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC
Q 018784           90 ALTGDEKHSFEHKHIVRACAF--SEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (350)
Q Consensus        90 ~~~~~~~~~~~h~~~V~~~~~--~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d  167 (350)
                      +.+++......|...|.+++|  +|++.+|++++.|+.|++||+.+....... . ....+.++.+..   ..++.++.+
T Consensus       115 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~-~~~~~~~~~~~~---~~~~~~~~~  189 (368)
T 3mmy_A          115 LSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL-Q-LPERCYCADVIY---PMAVVATAE  189 (368)
T ss_dssp             TTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEE-E-CSSCEEEEEEET---TEEEEEEGG
T ss_pred             cCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEE-e-cCCCceEEEecC---CeeEEEeCC
Confidence            999988888889999999999  899999999999999999999876544333 2 234566776653   256667788


Q ss_pred             CeEEEEECCCCceeEeec---CCCCeEEEEEecCCc-----EEEEEcCCcEEEEECCCc---ceeeeeecCC--------
Q 018784          168 GGVRLWDARSGKIVQTLE---TKSPVTSAEVSRDGR-----YITTADGSSVKFWDANHF---GLVKGYNMPC--------  228 (350)
Q Consensus       168 g~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~-----~l~~~~~~~i~vwd~~~~---~~~~~~~~~~--------  228 (350)
                      +.+++||++.........   .......+.+.++..     +++++.++.|++||++..   ..+..+..+.        
T Consensus       190 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (368)
T 3mmy_A          190 RGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSA  269 (368)
T ss_dssp             GCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CC
T ss_pred             CcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccc
Confidence            999999998765433222   234455666655443     566678999999999876   3333443332        


Q ss_pred             -----CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          229 -----NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       229 -----~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                           ....+.+.+ ++++|++|+.|+.|++||+.+++.+..+.+|..+|.+++|+|++++|++|+.|+..+.|+.
T Consensus       270 ~~~~~~v~~~~~sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          270 PQDIYAVNGIAFHP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             CEEECCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             cccccceEEEEEec-CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccc
Confidence                 233455665 5789999999999999999999999999999999999999999999999999987666654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=6.8e-38  Score=284.47  Aligned_cols=276  Identities=12%  Similarity=0.099  Sum_probs=206.4

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCC-------CeeEeeCCCCce----------eeeccCccCCeEEEEECCCCcEEE-
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDS-------SPMLRNGETGDW----------IGTFEGHKGAVWSCCLDANALFSA-   77 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~-------~v~iw~~~~~~~----------~~~l~gH~~~V~~v~~~~~~~~l~-   77 (350)
                      .-||++++|+|   ||++||+|+.|.       +|+||+......          ...|.+|...|.+++++  +..++ 
T Consensus        14 g~PV~sv~fs~---dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~   88 (365)
T 4h5i_A           14 GYPAYGAKFLN---NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILV   88 (365)
T ss_dssp             SSCEEEEEEEE---TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEE
T ss_pred             CCCEEEEEEeC---CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEE
Confidence            34899999997   999999998654       499999765432          13578899999887765  33444 


Q ss_pred             ----------EeeCCCeEEEeeCCCCCeeeee----------eccccEeEEEEcCCCCeEEE--eeCCCeEEEEECCCCC
Q 018784           78 ----------SGSADFTAKLWDALTGDEKHSF----------EHKHIVRACAFSEDTHLLLT--GGFEKILRIFDLNRPD  135 (350)
Q Consensus        78 ----------s~s~Dg~v~vWd~~~~~~~~~~----------~h~~~V~~~~~~~~~~~l~s--g~~d~~v~vwd~~~~~  135 (350)
                                +++.|+++|+|++.+.......          .+...+++++|+|||+++++  ++.|++|++||+.+..
T Consensus        89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~  168 (365)
T 4h5i_A           89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT  168 (365)
T ss_dssp             ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE
T ss_pred             EECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc
Confidence                      4467889999998665432211          13456899999999999764  5579999999998655


Q ss_pred             CCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec---CCCCeEEEEEecCCcEEEEEc-CC---
Q 018784          136 APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE---TKSPVTSAEVSRDGRYITTAD-GS---  208 (350)
Q Consensus       136 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~-~~---  208 (350)
                      ....  ..|.+.|.+++|+| ++.++++++++ .+++|+..+++.+....   +...+.+++|+|++++++++. ++   
T Consensus       169 ~~~~--~~~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~  244 (365)
T 4h5i_A          169 EKFE--IETRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKG  244 (365)
T ss_dssp             EEEE--EECSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCC
T ss_pred             EEEE--eCCCCceEEEEEcc-CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcce
Confidence            4322  24667899999986 56677787754 67777777776554332   345789999999999886653 33   


Q ss_pred             -cEEEEECCCccee----eeeecCCC-CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEe-ecCCCcCEEEEEEcCC
Q 018784          209 -SVKFWDANHFGLV----KGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGC-NKGHHGPVHCVRFSPG  281 (350)
Q Consensus       209 -~i~vwd~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~-~~~h~~~v~~l~~sp~  281 (350)
                       .+++||+......    +.+..+.. ..++.+.| ++++|++|+.|+.|+|||+.+++++.. +.+|..+|++|+|+||
T Consensus       245 ~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpd  323 (365)
T 4h5i_A          245 IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPD  323 (365)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTT
T ss_pred             eEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCC
Confidence             5888987664421    22222322 33455655 689999999999999999999999887 4799999999999999


Q ss_pred             CCEEEEecCCCcEEEecCCC
Q 018784          282 GESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       282 ~~~lasgs~Dg~v~vw~~~~  301 (350)
                      +++|||||.|++|+||+++.
T Consensus       324 g~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          324 STYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             SCEEEEEETTSEEEEEECCT
T ss_pred             CCEEEEEeCCCeEEEEEcCC
Confidence            99999999999999999853

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=3.2e-37  Score=276.21  Aligned_cols=276  Identities=11%  Similarity=0.004  Sum_probs=229.4

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc---eeeeccCccCCeEEEEECCCCc-EEEEeeCCCeEEE
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---WIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKL   87 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~---~~~~l~gH~~~V~~v~~~~~~~-~l~s~s~Dg~v~v   87 (350)
                      ..+|.++|++++|+|   ++.+|++|+.|++|+||+..+++   ....+.+|...|.+++|++++. ++++|+.||.|++
T Consensus         7 ~~~h~~~v~~~~~s~---~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~   83 (342)
T 1yfq_A            7 EQAPKDYISDIKIIP---SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             SSCCSSCEEEEEEEG---GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             ccCCCCcEEEEEEcC---CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEE
Confidence            368999999999997   89999999999999999998877   3456668999999999999999 9999999999999


Q ss_pred             eeC-CCCCeeeeee--ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCC---------CCCCCeeecCCCCcEEEEEEeC
Q 018784           88 WDA-LTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR---------PDAPPREVGNSSGSIRTVAWLH  155 (350)
Q Consensus        88 Wd~-~~~~~~~~~~--h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~---------~~~~~~~~~~~~~~v~~~~~~~  155 (350)
                      ||+ .++.......  |...|.+++|+| +.+|++++.|+.|++||+..         ...... . .+...+.+++|.+
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~-~~~~~v~~~~~~~  160 (342)
T 1yfq_A           84 VDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN-T-KVKNKIFTMDTNS  160 (342)
T ss_dssp             ECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS-S-SSCCCEEEEEECS
T ss_pred             EEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeE-E-eeCCceEEEEecC
Confidence            999 8887755556  999999999999 99999999999999999875         333222 2 2778899999975


Q ss_pred             CCCcEEEEEeCCCeEEEEECCC-Ccee---EeecCCCCeEEEEEec-CCcEEEE-EcCCcEEEEECCCc------ceeee
Q 018784          156 SDQTILSSCTDSGGVRLWDARS-GKIV---QTLETKSPVTSAEVSR-DGRYITT-ADGSSVKFWDANHF------GLVKG  223 (350)
Q Consensus       156 ~~~~~~~s~~~dg~i~iwd~~~-~~~~---~~~~~~~~v~~~~~~~-~~~~l~~-~~~~~i~vwd~~~~------~~~~~  223 (350)
                      ..   +++++.|+.|++||+++ +...   ....+...+.+++|+| +++++++ +.++.|++||.+..      .....
T Consensus       161 ~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~  237 (342)
T 1yfq_A          161 SR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFA  237 (342)
T ss_dssp             SE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred             Cc---EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccccee
Confidence            43   77888999999999998 5432   2334567899999999 8887765 46889999999776      55555


Q ss_pred             eecCC----------CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCC-CcCEEEEEEcCCCCEEEEecCCC
Q 018784          224 YNMPC----------NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGH-HGPVHCVRFSPGGESYASGSEDG  292 (350)
Q Consensus       224 ~~~~~----------~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h-~~~v~~l~~sp~~~~lasgs~Dg  292 (350)
                      +..+.          ....+.+.+ ++++|++|+.|+.|++||+.+++.+..+.+| ..+|.+++  |++++|++|+.||
T Consensus       238 ~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg  314 (342)
T 1yfq_A          238 FRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD  314 (342)
T ss_dssp             EECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred             eecccccccccccceeEEEEEEcC-CCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence            54432          233445555 5789999999999999999999999999998 99999999  9999999999999


Q ss_pred             c-EEEecC
Q 018784          293 T-IRIWQT  299 (350)
Q Consensus       293 ~-v~vw~~  299 (350)
                      . .+.|..
T Consensus       315 ~~~~~~~~  322 (342)
T 1yfq_A          315 TFKTNAAI  322 (342)
T ss_dssp             HHHHCSSS
T ss_pred             cccccccc
Confidence            8 666653

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.9e-36  Score=292.06  Aligned_cols=305  Identities=14%  Similarity=0.201  Sum_probs=232.3

Q ss_pred             eeccCCceeEEEecccCCCcc-EEEEEeCCCCeeEeeCCCCceeeeccCccC---CeEEEEECCC-CcEEEEeeCCCeEE
Q 018784           12 CHGHSRPVVDLFYSPITPDGF-FLVSASKDSSPMLRNGETGDWIGTFEGHKG---AVWSCCLDAN-ALFSASGSADFTAK   86 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~-~lasgs~d~~v~iw~~~~~~~~~~l~gH~~---~V~~v~~~~~-~~~l~s~s~Dg~v~   86 (350)
                      +.+|..+|.+++|+|   ++. ++++++.|+++++||..+++++..+.+|..   .|.+++|+|+ +.++++++.||.|+
T Consensus       156 ~~~~~~~v~~~~~~~---~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~  232 (615)
T 1pgu_A          156 VSGHSQRINACHLKQ---SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKIS  232 (615)
T ss_dssp             CCSCSSCEEEEEECS---SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred             eecCCccEEEEEECC---CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEE
Confidence            478999999999987   776 899999999999999999999999999999   9999999999 99999999999999


Q ss_pred             EeeCCCCCeeeee-----eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee--------------------
Q 018784           87 LWDALTGDEKHSF-----EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV--------------------  141 (350)
Q Consensus        87 vWd~~~~~~~~~~-----~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~--------------------  141 (350)
                      +||+.+++....+     .|...|.+++|+ ++.+|++++.|+.|++||+.+........                    
T Consensus       233 vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (615)
T 1pgu_A          233 CFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR  311 (615)
T ss_dssp             EEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTE
T ss_pred             EEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCe
Confidence            9999999988887     789999999999 99999999999999999987543211111                    


Q ss_pred             ------------------------cCCCCc---------------------------------EEEEEEeCCCCcEEEEE
Q 018784          142 ------------------------GNSSGS---------------------------------IRTVAWLHSDQTILSSC  164 (350)
Q Consensus       142 ------------------------~~~~~~---------------------------------v~~~~~~~~~~~~~~s~  164 (350)
                                              ..|...                                 |.+++| + ++..++++
T Consensus       312 l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~-~~~~l~~~  389 (615)
T 1pgu_A          312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-S-KAQEYSSI  389 (615)
T ss_dssp             EEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-C-STTCCEEE
T ss_pred             EEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-C-CCcEEEEE
Confidence                                    112222                                 223332 1 12334445


Q ss_pred             eCCCeEEEEECC----------------------------------CCceeEeecCCCCeEEEEEecCCcEEEE-Ec-CC
Q 018784          165 TDSGGVRLWDAR----------------------------------SGKIVQTLETKSPVTSAEVSRDGRYITT-AD-GS  208 (350)
Q Consensus       165 ~~dg~i~iwd~~----------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~-~~  208 (350)
                      +.|++|++||++                                  +++.+..+....++.+++++  ++++++ +. ++
T Consensus       390 ~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~  467 (615)
T 1pgu_A          390 SWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGN  467 (615)
T ss_dssp             ETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTS
T ss_pred             eCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCC
Confidence            555555555543                                  23334444445567777777  555544 45 88


Q ss_pred             cEEEEECCCccee-eeeecCC-CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecC-CCcCEEEEEEcC-----
Q 018784          209 SVKFWDANHFGLV-KGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG-HHGPVHCVRFSP-----  280 (350)
Q Consensus       209 ~i~vwd~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~-h~~~v~~l~~sp-----  280 (350)
                      .|++||+.+.... ..+..+. ....+.+.+ ++++|++|+.|+.|++||+.+++.+..+.+ |...|++++|+|     
T Consensus       468 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~  546 (615)
T 1pgu_A          468 TIQVFKLSDLEVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGA  546 (615)
T ss_dssp             CEEEEETTEEEEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC---
T ss_pred             eEEEEECCCccccccccCCccCceEEEEECC-CCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccc
Confidence            9999999876554 2222222 233445554 689999999999999999999999999888 999999999999     


Q ss_pred             -----CCCEEEEecCCCcEEEecCCCC-CcccCCCCCCCccccccccccccceeeeeeEEEcccch
Q 018784          281 -----GGESYASGSEDGTIRIWQTNPP-NHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGK  340 (350)
Q Consensus       281 -----~~~~lasgs~Dg~v~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~  340 (350)
                           ++++|++|+.||.|++|++... ...               .....+...|.++.++|||+
T Consensus       547 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---------------~~~~~h~~~v~~l~~s~~~~  597 (615)
T 1pgu_A          547 NEEEIEEDLVATGSLDTNIFIYSVKRPMKII---------------KALNAHKDGVNNLLWETPST  597 (615)
T ss_dssp             ---CCSCCEEEEEETTSCEEEEESSCTTCCE---------------EETTSSTTCEEEEEEEETTE
T ss_pred             cccccCCCEEEEEcCCCcEEEEECCCCceec---------------hhhhcCccceEEEEEcCCCC
Confidence                 9999999999999999998654 222               22334455677778888775

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.5e-36  Score=273.18  Aligned_cols=244  Identities=18%  Similarity=0.248  Sum_probs=200.8

Q ss_pred             EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~   90 (350)
                      .+.||..+|.+++|+|   ++.+|++|+.|++|+|||+.+++++..+.+|...|.+++|+|++.++++++.|++|++||+
T Consensus        71 ~l~~h~~~V~~~~~~~---~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~  147 (343)
T 2xzm_R           71 ALTGHNHFVSDLALSQ---ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI  147 (343)
T ss_dssp             EECCCSSCEEEEEECS---STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEES
T ss_pred             hhccCCCceEEEEECC---CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEec
Confidence            3589999999999986   8999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCeeeee---eccccEeEEEEcCCC----------CeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCC
Q 018784           91 LTGDEKHSF---EHKHIVRACAFSEDT----------HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD  157 (350)
Q Consensus        91 ~~~~~~~~~---~h~~~V~~~~~~~~~----------~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (350)
                      .........   .|...|.+++|+|++          .+|++++.|++|++||..  .........|...|.+++|++ +
T Consensus       148 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~-~  224 (343)
T 2xzm_R          148 LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISP-N  224 (343)
T ss_dssp             SSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECT-T
T ss_pred             cCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECC-C
Confidence            743322222   478889999999987          789999999999999953  222334567888999999986 5


Q ss_pred             CcEEEEEeCCCeEEEEECC-CCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceee--eee---------
Q 018784          158 QTILSSCTDSGGVRLWDAR-SGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVK--GYN---------  225 (350)
Q Consensus       158 ~~~~~s~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~--~~~---------  225 (350)
                      +.++++|+.|++|++||++ .......+.....+.+++|+|++.+++++.++.|++||+.+.....  .+.         
T Consensus       225 g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~  304 (343)
T 2xzm_R          225 GKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEG  304 (343)
T ss_dssp             SSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTT
T ss_pred             CCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhh
Confidence            6788899999999999994 4455555656677999999999999999999999999998765433  221         


Q ss_pred             --cC-CCCceeEecCCCCcEEEEecCCCeEEEEEcccCe
Q 018784          226 --MP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (350)
Q Consensus       226 --~~-~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~  261 (350)
                        .+ .....+.+.| ++++|++|+.|+.|++|++.++.
T Consensus       305 ~~~~~~~v~~~~~sp-~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          305 QKGKNPQCTSLAWNA-LGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             BCCSCCCEEEEEECS-SSCCEEEEETTSEEEEEEEEEEE
T ss_pred             hcCCCCceEEEEECC-CCCeEEEecCCceEEEEEEEccC
Confidence              11 1123455655 58899999999999999987653

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-36  Score=272.91  Aligned_cols=281  Identities=17%  Similarity=0.262  Sum_probs=214.8

Q ss_pred             CceeeeccCccC-CeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCee--ee--eeccccEeEEEEcCCCCeEEEeeCCCe
Q 018784           51 GDWIGTFEGHKG-AVWSCCLDANALFSASGSADFTAKLWDALTGDEK--HS--FEHKHIVRACAFSEDTHLLLTGGFEKI  125 (350)
Q Consensus        51 ~~~~~~l~gH~~-~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~--~~--~~h~~~V~~~~~~~~~~~l~sg~~d~~  125 (350)
                      .+++.++.+|.+ .|++++|+|++.+||||+.|++|+|||+.++...  ..  ..|...|.+++|+|++++|++|+.|++
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~   84 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT   84 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence            456778999998 8999999999999999999999999999876532  22  258899999999999999999999999


Q ss_pred             EEEEECCCCCC-CCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCc---eeEeec-CCCCeEEEEEecCCc
Q 018784          126 LRIFDLNRPDA-PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK---IVQTLE-TKSPVTSAEVSRDGR  200 (350)
Q Consensus       126 v~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~---~~~~~~-~~~~v~~~~~~~~~~  200 (350)
                      +++||+..... .......|...|.+++|++ ++.++++|+.|++|++||++++.   ++..+. +...+..++|+|+++
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  163 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE  163 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence            99999875432 2234567889999999986 56788899999999999998764   344444 356799999999998


Q ss_pred             EEEEE-cCCcEEEEECCCccee--eeeecCCC-CceeEecCCCCcEEEEecCCCeEEEEEcccC---------------e
Q 018784          201 YITTA-DGSSVKFWDANHFGLV--KGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTG---------------E  261 (350)
Q Consensus       201 ~l~~~-~~~~i~vwd~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~---------------~  261 (350)
                      +|+++ .|+.|++||.+.....  ..+..+.. ...+.+.+ ++++|++|+.|++|++||....               .
T Consensus       164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~  242 (345)
T 3fm0_A          164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK  242 (345)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred             EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence            77654 6899999998876433  33333333 34455665 5899999999999999997432               2


Q ss_pred             eEEeecC-CCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCCCCcccccccc-ccccceeeeeeEEEcccc
Q 018784          262 QIGCNKG-HHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKA-STDEVTRKIEGFHINKEG  339 (350)
Q Consensus       262 ~~~~~~~-h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~g  339 (350)
                      .+..+.+ |...|++++|+|++..|++++.|+.|++|+..........       ...+.. ....+...|.++.++|++
T Consensus       243 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~-------~~~~~~~~~~~h~~~V~~v~~~p~~  315 (345)
T 3fm0_A          243 CICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQP-------TFSLTAHLHQAHSQDVNCVAWNPKE  315 (345)
T ss_dssp             EEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSC-------CEEEEEEETTSSSSCEEEEEECSSS
T ss_pred             eeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCccee-------eEEEEeeecccccCcEeEeEEeCCC
Confidence            3344554 8899999999999999999999999999998654321110       001111 123456678888888876


Q ss_pred             h
Q 018784          340 K  340 (350)
Q Consensus       340 ~  340 (350)
                      .
T Consensus       316 ~  316 (345)
T 3fm0_A          316 P  316 (345)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4.9e-37  Score=319.26  Aligned_cols=287  Identities=19%  Similarity=0.293  Sum_probs=248.7

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~   92 (350)
                      .+|..+|.+++|+|   ++.++++++.|+++++|+..++..+..+.+|.+.|.+++|+|++.++++++.||+|++|++.+
T Consensus       837 ~~~~~~v~~~~~sp---~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          837 TGHHSTIQYCDFSP---YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             CSSSSCCCEEEECS---STTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred             CCCCCceEEEEEcC---CCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence            38999999999987   899999999999999999999999999999999999999999999999999999999999643


Q ss_pred             CCe--------------------------------------eeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCC
Q 018784           93 GDE--------------------------------------KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP  134 (350)
Q Consensus        93 ~~~--------------------------------------~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~  134 (350)
                      ...                                      .....+...+.+++|+|+++++++|+.|+.|++||+.++
T Consensus       914 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~  993 (1249)
T 3sfz_A          914 VCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN  993 (1249)
T ss_dssp             HHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT
T ss_pred             cceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC
Confidence            100                                      001123456899999999999999999999999999865


Q ss_pred             CCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEE
Q 018784          135 DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWD  214 (350)
Q Consensus       135 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd  214 (350)
                      .. ......|...|.+++|++ ++..+++++.|++|++||+.+++......+...+.++.++|++.+++++.++.|++||
T Consensus       994 ~~-~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A          994 RV-FSSGVGHKKAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWN 1071 (1249)
T ss_dssp             SC-EEECCCCSSCCCCEEECS-SSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEE
T ss_pred             ce-eeecccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEE
Confidence            43 344457888999999986 4567778899999999999999888777777899999999999999999999999999


Q ss_pred             CCCcceeeeeecCCCC-ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCc
Q 018784          215 ANHFGLVKGYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGT  293 (350)
Q Consensus       215 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~  293 (350)
                      +.++..+..+..+... ..+.+.+ +++++++++.|+.|++||+.+++.+..+.+|...|++++|+|++++|++|+.||.
T Consensus      1072 ~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~ 1150 (1249)
T 3sfz_A         1072 VITGRIERDFTCHQGTVLSCAISS-DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGE 1150 (1249)
T ss_dssp             TTTTCCCEEEECCSSCCCCEEECS-SSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSC
T ss_pred             CCCCceeEEEcccCCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCE
Confidence            9998888777655443 3445554 6889999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCcc
Q 018784          294 IRIWQTNPPNHE  305 (350)
Q Consensus       294 v~vw~~~~~~~~  305 (350)
                      |++||+......
T Consensus      1151 i~vwd~~~~~~~ 1162 (1249)
T 3sfz_A         1151 IRIWNVSDGQLL 1162 (1249)
T ss_dssp             CCEEESSSSCCC
T ss_pred             EEEEECCCCceE
Confidence            999999766544

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.7e-35  Score=262.50  Aligned_cols=272  Identities=24%  Similarity=0.352  Sum_probs=219.8

Q ss_pred             CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEE
Q 018784           51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIF  129 (350)
Q Consensus        51 ~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vw  129 (350)
                      .....++.+|.+.|.+++|+|++.++++++.||.|++|+..+++....+ .|...|.+++|+|++++|++++.|+.|++|
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw   92 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW   92 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence            3456688999999999999999999999999999999999888876666 588899999999999999999999999999


Q ss_pred             ECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEE-cC
Q 018784          130 DLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DG  207 (350)
Q Consensus       130 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~  207 (350)
                      |+.+... ......|...+.+++|.+ ++.++++|+.|++|++||+++++.+..+.. ..++.+++|+|++++++++ .+
T Consensus        93 d~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
T 4ery_A           93 DVSSGKC-LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  170 (312)
T ss_dssp             ETTTCCE-EEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ECCCCcE-EEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence            9986543 334566888999999986 566788999999999999999998888875 4689999999999877654 68


Q ss_pred             CcEEEEECCCcceeeeeecCCC-C-ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEE---EEEEcCCC
Q 018784          208 SSVKFWDANHFGLVKGYNMPCN-T-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVH---CVRFSPGG  282 (350)
Q Consensus       208 ~~i~vwd~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~---~l~~sp~~  282 (350)
                      +.|++||+++...+..+..... . ..+.+.+ ++++|++++.|+.|++||+.+++.+..+.+|...+.   .....+++
T Consensus       171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (312)
T 4ery_A          171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG  249 (312)
T ss_dssp             SCEEEEETTTCCEEEEECCSSCCCEEEEEECT-TSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSS
T ss_pred             CcEEEEECCCCceeeEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCC
Confidence            9999999998877665543322 2 2344554 588999999999999999999999999988876533   23334678


Q ss_pred             CEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccch
Q 018784          283 ESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGK  340 (350)
Q Consensus       283 ~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~  340 (350)
                      .+|++|+.||.|++||+...+.....               ..+...|....++|++.
T Consensus       250 ~~l~sg~~dg~i~vwd~~~~~~~~~~---------------~~h~~~v~~~~~~p~~~  292 (312)
T 4ery_A          250 KWIVSGSEDNLVYIWNLQTKEIVQKL---------------QGHTDVVISTACHPTEN  292 (312)
T ss_dssp             CEEEECCTTSCEEEEETTTCCEEEEE---------------CCCSSCEEEEEECSSSS
T ss_pred             cEEEEECCCCEEEEEECCCchhhhhh---------------hccCCcEEEEeecCcCC
Confidence            89999999999999998765443322               33444556666666654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.2e-35  Score=276.38  Aligned_cols=274  Identities=24%  Similarity=0.372  Sum_probs=231.1

Q ss_pred             EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~   90 (350)
                      .+.+|.++|+++.|+     +.+|++|+.|++|++||..+++.+..+.+|...|.++.++  +..+++|+.||+|++||+
T Consensus       154 ~~~~h~~~v~~~~~~-----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~  226 (445)
T 2ovr_B          154 TLVGHTGGVWSSQMR-----DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDI  226 (445)
T ss_dssp             ECCCCSSCEEEEEEE-----TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEES
T ss_pred             EEcCCCCCEEEEEec-----CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEEC
Confidence            357999999999996     3499999999999999999999999999999999999985  678999999999999999


Q ss_pred             CCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe
Q 018784           91 LTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (350)
Q Consensus        91 ~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~  169 (350)
                      .+++....+ .|...|.+++|  ++.++++|+.|+.|++||+.++.. ......|...+.++.|   ++..+++++.|++
T Consensus       227 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~  300 (445)
T 2ovr_B          227 ETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETC-LHTLQGHTNRVYSLQF---DGIHVVSGSLDTS  300 (445)
T ss_dssp             SSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEE-EEEECCCSSCEEEEEE---CSSEEEEEETTSC
T ss_pred             CCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcE-eEEecCCCCceEEEEE---CCCEEEEEeCCCe
Confidence            998877766 58889999999  788999999999999999876543 3344567888999988   5667889999999


Q ss_pred             EEEEECCCCceeEeecCC-CCeEEEEEecCCcEE-EEEcCCcEEEEECCCcceeeeeecCC---C-CceeEecCCCCcEE
Q 018784          170 VRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMPC---N-TESASLEPKLGNIF  243 (350)
Q Consensus       170 i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l-~~~~~~~i~vwd~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~l  243 (350)
                      |++||+++++++..+..+ ..+..+.++  +.++ +++.++.|++||+++...+..+..+.   . ...+.+   +++++
T Consensus       301 i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l  375 (445)
T 2ovr_B          301 IRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF---NKNFV  375 (445)
T ss_dssp             EEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE---CSSEE
T ss_pred             EEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEE---CCCEE
Confidence            999999999998888754 456666654  4454 55678999999999988887776522   1 223333   36899


Q ss_pred             EEecCCCeEEEEEcccCeeEEee-----cCCCcCEEEEEEcCCCCEEEEecCCCc----EEEecCCCC
Q 018784          244 IAGGEDMWVHVFDFHTGEQIGCN-----KGHHGPVHCVRFSPGGESYASGSEDGT----IRIWQTNPP  302 (350)
Q Consensus       244 ~sg~~d~~i~v~d~~~~~~~~~~-----~~h~~~v~~l~~sp~~~~lasgs~Dg~----v~vw~~~~~  302 (350)
                      ++|+.|+.|++||+.+++.+..+     .+|.+.|++++|+|++.++++|+.||+    |.+||.+..
T Consensus       376 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          376 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             EEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence            99999999999999999988777     478889999999999999999999998    999998654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-36  Score=273.77  Aligned_cols=247  Identities=17%  Similarity=0.257  Sum_probs=200.3

Q ss_pred             EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCC--CCceeeeccCccCCeEEEEECCC--CcEEEEeeCCCeEE
Q 018784           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE--TGDWIGTFEGHKGAVWSCCLDAN--ALFSASGSADFTAK   86 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~--~~~~~~~l~gH~~~V~~v~~~~~--~~~l~s~s~Dg~v~   86 (350)
                      +++||.++|.+++|+|   ++.+||+|+.|++|+||+..  +++.+..+.+|...|++++|+++  +.++++++.||.|+
T Consensus         6 ~~~~h~~~v~~~~~s~---~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            6 IANAHNELIHDAVLDY---YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             CEEECCCCEEEEEECS---SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             EecCCcccEEEEEEcC---CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            4689999999999987   99999999999999999987  67788899999999999999877  89999999999999


Q ss_pred             EeeCCCCC--eeeee-eccccEeEEEEcCC--CCeEEEeeCCCeEEEEECCCCCCCC-eeecCCCCcEEEEEEeCC----
Q 018784           87 LWDALTGD--EKHSF-EHKHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDAPP-REVGNSSGSIRTVAWLHS----  156 (350)
Q Consensus        87 vWd~~~~~--~~~~~-~h~~~V~~~~~~~~--~~~l~sg~~d~~v~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~----  156 (350)
                      +||+.+++  ....+ .|...|.+++|+|+  +.+|++++.|+.|++||+....... .....|...+.+++|.+.    
T Consensus        83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  162 (379)
T 3jrp_A           83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  162 (379)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred             EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence            99998876  33333 48889999999999  9999999999999999998764333 345578889999999875    


Q ss_pred             --------CCcEEEEEeCCCeEEEEECCCCce----eEeec-CCCCeEEEEEecC---CcEEEEEcCCcEEEEECCCcce
Q 018784          157 --------DQTILSSCTDSGGVRLWDARSGKI----VQTLE-TKSPVTSAEVSRD---GRYITTADGSSVKFWDANHFGL  220 (350)
Q Consensus       157 --------~~~~~~s~~~dg~i~iwd~~~~~~----~~~~~-~~~~v~~~~~~~~---~~~l~~~~~~~i~vwd~~~~~~  220 (350)
                              ++.++++++.|++|++||+++++.    ...+. +..++.+++|+|+   +.+                   
T Consensus       163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~-------------------  223 (379)
T 3jrp_A          163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY-------------------  223 (379)
T ss_dssp             -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEE-------------------
T ss_pred             cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCe-------------------
Confidence                    678889999999999999987653    23333 3467888888876   444                   


Q ss_pred             eeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCe-----eEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEE
Q 018784          221 VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE-----QIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIR  295 (350)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~-----~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~  295 (350)
                                            |++++.|+.|++||+.++.     .+.....|...|++++|+|++++|++++.||.|+
T Consensus       224 ----------------------l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~  281 (379)
T 3jrp_A          224 ----------------------LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVT  281 (379)
T ss_dssp             ----------------------EEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEE
T ss_pred             ----------------------EEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEE
Confidence                                  4444444555555544432     1122345888999999999999999999999999


Q ss_pred             EecCCC
Q 018784          296 IWQTNP  301 (350)
Q Consensus       296 vw~~~~  301 (350)
                      +|++..
T Consensus       282 iw~~~~  287 (379)
T 3jrp_A          282 LWKENL  287 (379)
T ss_dssp             EEEEEE
T ss_pred             EEeCCC
Confidence            999863

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.6e-36  Score=289.32  Aligned_cols=284  Identities=18%  Similarity=0.165  Sum_probs=242.0

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC----ceeeeccCccCC-eEEEEECC--CCcEEEEeeCCCe
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----DWIGTFEGHKGA-VWSCCLDA--NALFSASGSADFT   84 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~----~~~~~l~gH~~~-V~~v~~~~--~~~~l~s~s~Dg~   84 (350)
                      ...|.+.|.+++|+|   +|++||+++ |+.++||+..++    +....+.+|.+. |.+++|+|  ++.++++++.||+
T Consensus        14 ~~~~~~~v~~~~~sp---dg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~   89 (615)
T 1pgu_A           14 PSTQRNFTTHLSYDP---TTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGK   89 (615)
T ss_dssp             CCCCTTCCCCCEEET---TTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSE
T ss_pred             CCCccCceeEEEECC---CCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCE
Confidence            368999999999997   999999998 789999999999    899999999999 99999999  9999999999999


Q ss_pred             EEEeeCCCC--------Ceeeee-eccccEeEEEEcCCCCeEEEeeCC----CeEEEEECCCCCCCCeeecCCCCcEEEE
Q 018784           85 AKLWDALTG--------DEKHSF-EHKHIVRACAFSEDTHLLLTGGFE----KILRIFDLNRPDAPPREVGNSSGSIRTV  151 (350)
Q Consensus        85 v~vWd~~~~--------~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d----~~v~vwd~~~~~~~~~~~~~~~~~v~~~  151 (350)
                      |++||+.++        .....+ .|...|.+++|+|++++|++++.+    +.|++||..   ........|...+.++
T Consensus        90 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~---~~~~~~~~~~~~v~~~  166 (615)
T 1pgu_A           90 VIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG---NSLGEVSGHSQRINAC  166 (615)
T ss_dssp             EEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC---CEEEECCSCSSCEEEE
T ss_pred             EEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECC---CcceeeecCCccEEEE
Confidence            999999754        334444 388899999999999999999988    689999843   2334456788899999


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-C---CeEEEEEecC-CcEEEE-EcCCcEEEEECCCcceeeee-
Q 018784          152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-S---PVTSAEVSRD-GRYITT-ADGSSVKFWDANHFGLVKGY-  224 (350)
Q Consensus       152 ~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~---~v~~~~~~~~-~~~l~~-~~~~~i~vwd~~~~~~~~~~-  224 (350)
                      +|++.+..++++++.|++|++||+++++.+..+..+ .   .+.+++|+|+ ++++++ +.++.|++||+++.+.+..+ 
T Consensus       167 ~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  246 (615)
T 1pgu_A          167 HLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE  246 (615)
T ss_dssp             EECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC
T ss_pred             EECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEec
Confidence            999877768999999999999999999998888754 4   6999999999 887765 46899999999998888776 


Q ss_pred             e---cC-CCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCC----CcCEEEEEEcCCCCEEEEecCCCcEEE
Q 018784          225 N---MP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGH----HGPVHCVRFSPGGESYASGSEDGTIRI  296 (350)
Q Consensus       225 ~---~~-~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h----~~~v~~l~~sp~~~~lasgs~Dg~v~v  296 (350)
                      .   .+ .....+.+.  ++++|++++.|+.|++||+.+++.+..+..+    ...+.++.|+ ++.++++|+.|+.|++
T Consensus       247 ~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~  323 (615)
T 1pgu_A          247 DDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNF  323 (615)
T ss_dssp             BTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEE
T ss_pred             ccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEE
Confidence            2   22 233445555  6899999999999999999999998888766    4678899996 8899999999999999


Q ss_pred             ecCCCCCcc
Q 018784          297 WQTNPPNHE  305 (350)
Q Consensus       297 w~~~~~~~~  305 (350)
                      ||+......
T Consensus       324 ~d~~~~~~~  332 (615)
T 1pgu_A          324 YELGHDEVL  332 (615)
T ss_dssp             EETTEEEEE
T ss_pred             EECCCCcEE
Confidence            998764443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-37  Score=283.76  Aligned_cols=287  Identities=13%  Similarity=0.215  Sum_probs=222.9

Q ss_pred             ccCCceeEEEecc-------cCCCccEEEEEeCCCCeeEeeCCCCceeeec-cCccCCeEEEEECC-CCcEEEEeeCCCe
Q 018784           14 GHSRPVVDLFYSP-------ITPDGFFLVSASKDSSPMLRNGETGDWIGTF-EGHKGAVWSCCLDA-NALFSASGSADFT   84 (350)
Q Consensus        14 gH~~~v~~~~~~~-------~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l-~gH~~~V~~v~~~~-~~~~l~s~s~Dg~   84 (350)
                      .|...+..+.+.|       ++|++..+++++      .|+ .+++++.++ ++|.+.|++++|++ ++.+|+||+.||+
T Consensus        15 ~~~~~l~~~~~~p~~~~~~~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~   87 (437)
T 3gre_A           15 SIEKFLSTFKILPPLRDYKEFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGV   87 (437)
T ss_dssp             CCGGGTTCC-CCCCGGGCGGGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSE
T ss_pred             HHHHHhccCCCCCChhchhhcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCce
Confidence            4455555554433       567777777665      487 567888888 99999999999999 9999999999999


Q ss_pred             EEEeeCCC---CC---eeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECC---CCCCCCeee---------cC--C
Q 018784           85 AKLWDALT---GD---EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN---RPDAPPREV---------GN--S  144 (350)
Q Consensus        85 v~vWd~~~---~~---~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~---~~~~~~~~~---------~~--~  144 (350)
                      |++||+.+   +.   ....+.|...|.+++|+|++.+|++|+.|++|++||+.   .+.......         ..  +
T Consensus        88 v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~  167 (437)
T 3gre_A           88 IKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGK  167 (437)
T ss_dssp             EEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSS
T ss_pred             EEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCccc
Confidence            99999866   33   34556799999999999999999999999999999984   222111000         01  4


Q ss_pred             CCcEEEEEEe-CCCCcEEEEEeCCCeEEEEECCCCceeEeecC---CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcc
Q 018784          145 SGSIRTVAWL-HSDQTILSSCTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFG  219 (350)
Q Consensus       145 ~~~v~~~~~~-~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~  219 (350)
                      ...+.++.+. .+++.++++++.|++|++||+++++++..+..   ...+++++|+|++++++++ .++.|++||+++..
T Consensus       168 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  247 (437)
T 3gre_A          168 NEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV  247 (437)
T ss_dssp             CCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE
T ss_pred             ccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc
Confidence            4556666543 35678899999999999999999999888875   5789999999999887754 68899999999988


Q ss_pred             eeeeeecCCC--CceeEecC---CCCcEEEEecCCCeEEEEEcccCeeEEeecC--------------------------
Q 018784          220 LVKGYNMPCN--TESASLEP---KLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG--------------------------  268 (350)
Q Consensus       220 ~~~~~~~~~~--~~~~~~~~---~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~--------------------------  268 (350)
                      ++..+.....  ...+.+.+   +++.+|++|+.|+.|++||+.+++.+..+.+                          
T Consensus       248 ~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  327 (437)
T 3gre_A          248 LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIR  327 (437)
T ss_dssp             EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCC
T ss_pred             EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccc
Confidence            8877654332  23333333   3567999999999999999999987766653                          


Q ss_pred             CCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCC
Q 018784          269 HHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENH  308 (350)
Q Consensus       269 h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~  308 (350)
                      |...|++++|+ ++++|++|+.|+.|++||+...+.....
T Consensus       328 ~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~  366 (437)
T 3gre_A          328 SLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAV  366 (437)
T ss_dssp             SGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred             cCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEE
Confidence            55668889999 7789999999999999999877655443

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.8e-36  Score=268.53  Aligned_cols=243  Identities=16%  Similarity=0.243  Sum_probs=186.8

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC-------CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEE
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-------GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~-------~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~   86 (350)
                      +|.++|.+++|+|   ++.+||+|+.|++|+||+...       .+++..+.+|.+.|.+++|+|++.+|+||+.|++|+
T Consensus        56 ~h~~~v~~v~~sp---~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~  132 (330)
T 2hes_X           56 AHKKAIRSVAWRP---HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVW  132 (330)
T ss_dssp             CCCSCEEEEEECT---TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEE
T ss_pred             CccCCEEEEEECC---CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEE
Confidence            3999999999987   899999999999999999842       456778999999999999999999999999999999


Q ss_pred             EeeCCCC----Ceeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCC-CCCeeecCCCCcEEEEEEeCCC-Cc
Q 018784           87 LWDALTG----DEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD-APPREVGNSSGSIRTVAWLHSD-QT  159 (350)
Q Consensus        87 vWd~~~~----~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~  159 (350)
                      +||+...    +....+ .|...|.+++|+|++.+|++|+.|++|++||+.... ........|.+.|.+++|.+.. ..
T Consensus       133 iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  212 (330)
T 2hes_X          133 IWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVF  212 (330)
T ss_dssp             EEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSC
T ss_pred             EEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCee
Confidence            9998432    233333 588999999999999999999999999999986432 1233456788999999998753 56


Q ss_pred             EEEEEeCCCeEEEEECCCC--------ceeEeec--CCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcc--eeeee-ec
Q 018784          160 ILSSCTDSGGVRLWDARSG--------KIVQTLE--TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFG--LVKGY-NM  226 (350)
Q Consensus       160 ~~~s~~~dg~i~iwd~~~~--------~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~--~~~~~-~~  226 (350)
                      .+++++.|++|++||++++        .+...+.  +...|.+++|++++.+++++.|+.|++||..+..  ..... ..
T Consensus       213 ~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~  292 (330)
T 2hes_X          213 RLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALC  292 (330)
T ss_dssp             EEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCT
T ss_pred             EEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccc
Confidence            7899999999999998764        3334443  4568999999988877788889999999987653  22222 12


Q ss_pred             CC--CCceeEecCC-CCcEEEEecCCCeEEEEEccc
Q 018784          227 PC--NTESASLEPK-LGNIFIAGGEDMWVHVFDFHT  259 (350)
Q Consensus       227 ~~--~~~~~~~~~~-~~~~l~sg~~d~~i~v~d~~~  259 (350)
                      +.  ....+.+.+. ++++|++|+.|+.|++||+.+
T Consensus       293 h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          293 HGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             cccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            22  2334556654 578999999999999999864

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-35  Score=296.58  Aligned_cols=284  Identities=13%  Similarity=0.112  Sum_probs=209.0

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCcee-----------eeccCccCCeEEEEECCC-CcEEEEeeC
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI-----------GTFEGHKGAVWSCCLDAN-ALFSASGSA   81 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~-----------~~l~gH~~~V~~v~~~~~-~~~l~s~s~   81 (350)
                      .|.+.|++++|+|   ++.+|++|+.|++|++||+.++++.           ..+.+|.+.|++++|+|+ +.++++|+.
T Consensus        96 ~~~~~V~~v~~sp---~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~  172 (902)
T 2oaj_A           96 FVPGKITSIDTDA---SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYE  172 (902)
T ss_dssp             ECSSCEEEEECCT---TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECS
T ss_pred             cCCCCEEEEEECC---CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeC
Confidence            3778999999986   9999999999999999999988764           456889999999999996 578899999


Q ss_pred             CCeEEEeeCCCCCeeeeee-c------------------cccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCe-ee
Q 018784           82 DFTAKLWDALTGDEKHSFE-H------------------KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR-EV  141 (350)
Q Consensus        82 Dg~v~vWd~~~~~~~~~~~-h------------------~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~-~~  141 (350)
                      ||+| +||+.+++....+. |                  ...|.+++|+|++++|++|+.|++|++||+.+++.... ..
T Consensus       173 dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l  251 (902)
T 2oaj_A          173 YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTV  251 (902)
T ss_dssp             SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECS
T ss_pred             CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEee
Confidence            9999 99999887766653 2                  46799999999999999999999999999976543211 00


Q ss_pred             ----c------------CCCCcEEEEEEeCC----CCcEEEEEeC-----------------------------------
Q 018784          142 ----G------------NSSGSIRTVAWLHS----DQTILSSCTD-----------------------------------  166 (350)
Q Consensus       142 ----~------------~~~~~v~~~~~~~~----~~~~~~s~~~-----------------------------------  166 (350)
                          .            .+...|.+++|.+.    +..++++|+.                                   
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~  331 (902)
T 2oaj_A          252 FETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANP  331 (902)
T ss_dssp             SCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSC
T ss_pred             cccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCc
Confidence                0            12346778877531    1244455433                                   


Q ss_pred             -----------------------------------------CCeEEEEECCCCceeEe-------ec-CCCCeEEE----
Q 018784          167 -----------------------------------------SGGVRLWDARSGKIVQT-------LE-TKSPVTSA----  193 (350)
Q Consensus       167 -----------------------------------------dg~i~iwd~~~~~~~~~-------~~-~~~~v~~~----  193 (350)
                                                               |++|++||+.++.....       +. ++..++++    
T Consensus       332 ~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~  411 (902)
T 2oaj_A          332 KQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAAS  411 (902)
T ss_dssp             SEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEE
T ss_pred             cceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEE
Confidence                                                     34455555444422111       00 11233333    


Q ss_pred             ------------------------------EEecCCcEEEEE-cCCcEEEEECCCccee--eeee---------cC-CCC
Q 018784          194 ------------------------------EVSRDGRYITTA-DGSSVKFWDANHFGLV--KGYN---------MP-CNT  230 (350)
Q Consensus       194 ------------------------------~~~~~~~~l~~~-~~~~i~vwd~~~~~~~--~~~~---------~~-~~~  230 (350)
                                                    +|+|++++++++ .|++|++||+.+....  ..+.         .+ ...
T Consensus       412 ~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V  491 (902)
T 2oaj_A          412 VPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAV  491 (902)
T ss_dssp             EEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCE
T ss_pred             cCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCce
Confidence                                          446778777654 6899999999776321  1111         11 223


Q ss_pred             ceeEecCCCCcEEEEecCCCeEEEEEcccCe---------------------------------------------eEEe
Q 018784          231 ESASLEPKLGNIFIAGGEDMWVHVFDFHTGE---------------------------------------------QIGC  265 (350)
Q Consensus       231 ~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~---------------------------------------------~~~~  265 (350)
                      ..+.+.| ++++||+|+.|++|+|||+.+++                                             ++..
T Consensus       492 ~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  570 (902)
T 2oaj_A          492 DKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTA  570 (902)
T ss_dssp             EEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEE
T ss_pred             eEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEE
Confidence            4566666 58999999999999999998762                                             3567


Q ss_pred             ecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCC
Q 018784          266 NKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPN  303 (350)
Q Consensus       266 ~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~  303 (350)
                      +.+|.++|++|+|||+| +||+|+.|++|+|||+..+.
T Consensus       571 l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~  607 (902)
T 2oaj_A          571 VHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPA  607 (902)
T ss_dssp             ECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTE
T ss_pred             EEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCe
Confidence            88999999999999999 99999999999999986543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=4.7e-36  Score=275.55  Aligned_cols=277  Identities=17%  Similarity=0.262  Sum_probs=216.9

Q ss_pred             eeEEEecccCCCc-cEEEEEeCCCCeeEeeCCCC----ceeeeccCccCCeEEEEECC-CCcEEEEeeCCCeEEEeeCCC
Q 018784           19 VVDLFYSPITPDG-FFLVSASKDSSPMLRNGETG----DWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALT   92 (350)
Q Consensus        19 v~~~~~~~~s~dg-~~lasgs~d~~v~iw~~~~~----~~~~~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~   92 (350)
                      ...++++|   +. .++++++.||.|+||+....    +.+..+.+|.+.|.+++|+| ++.++++|+.||+|++||+.+
T Consensus        37 ~~~~~~~~---~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~  113 (402)
T 2aq5_A           37 SGFCAVNP---KFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD  113 (402)
T ss_dssp             SCSEEECS---SEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCT
T ss_pred             CCcEEECC---CeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccC
Confidence            33455554   54 35556899999999998653    34556889999999999999 899999999999999999987


Q ss_pred             C-------Ceeeee-eccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCCCCeee-cCCCCcEEEEEEeCCCCcEEE
Q 018784           93 G-------DEKHSF-EHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILS  162 (350)
Q Consensus        93 ~-------~~~~~~-~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~  162 (350)
                      +       .....+ .|...|.+++|+|++ .+|++++.|+.|++||+.++....... ..|...+.+++|++ ++.+++
T Consensus       114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~  192 (402)
T 2aq5_A          114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSR-DGALIC  192 (402)
T ss_dssp             TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECT-TSSCEE
T ss_pred             CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECC-CCCEEE
Confidence            6       334444 589999999999998 699999999999999998654432221 56888999999986 556777


Q ss_pred             EEeCCCeEEEEECCCCceeEee-cCC-C-CeEEEEEecCCcEEEEE----cCCcEEEEECCCcce-eeeeec--CCCCce
Q 018784          163 SCTDSGGVRLWDARSGKIVQTL-ETK-S-PVTSAEVSRDGRYITTA----DGSSVKFWDANHFGL-VKGYNM--PCNTES  232 (350)
Q Consensus       163 s~~~dg~i~iwd~~~~~~~~~~-~~~-~-~v~~~~~~~~~~~l~~~----~~~~i~vwd~~~~~~-~~~~~~--~~~~~~  232 (350)
                      +++.|++|++||+++++.+..+ ..+ . .+..+.|+|++++++++    .++.|++||+++... +.....  ......
T Consensus       193 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~  272 (402)
T 2aq5_A          193 TSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLL  272 (402)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEE
T ss_pred             EEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeE
Confidence            8889999999999999988887 443 3 37899999999999887    678999999988654 333332  233445


Q ss_pred             eEecCCCCcEE-EEecCCCeEEEEEcccCee-EEeecC--CCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCC
Q 018784          233 ASLEPKLGNIF-IAGGEDMWVHVFDFHTGEQ-IGCNKG--HHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPP  302 (350)
Q Consensus       233 ~~~~~~~~~~l-~sg~~d~~i~v~d~~~~~~-~~~~~~--h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~  302 (350)
                      +.+.+. ++++ ++|+.|+.|++||+.+++. +..+..  |..+|.+++|+|++.++++  .|+.+++|++...
T Consensus       273 ~~~s~~-~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~  343 (402)
T 2aq5_A          273 PFFDPD-TNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER  343 (402)
T ss_dssp             EEEETT-TTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred             EEEcCC-CCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence            566664 5555 5777899999999998874 444433  5689999999999998764  5669999998653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.4e-34  Score=270.50  Aligned_cols=275  Identities=21%  Similarity=0.333  Sum_probs=224.6

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEEC--CCCcEEEEeeCCCeEEEee
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLD--ANALFSASGSADFTAKLWD   89 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~--~~~~~l~s~s~Dg~v~vWd   89 (350)
                      +.+|.++|.+++|+|   ++ +|++|+.|++|++||..+++++..+.+|.+.|.++++.  +++.++++++.||+|++||
T Consensus       158 ~~~h~~~V~~l~~~~---~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd  233 (464)
T 3v7d_B          158 LSGHDGGVWALKYAH---GG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK  233 (464)
T ss_dssp             ECCCSSCEEEEEECS---TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEE
T ss_pred             EeCCCcCEEEEEEcC---CC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEee
Confidence            579999999999986   66 89999999999999999999999999999999999997  6789999999999999999


Q ss_pred             CCCCCeee------------------------eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCC
Q 018784           90 ALTGDEKH------------------------SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS  145 (350)
Q Consensus        90 ~~~~~~~~------------------------~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~  145 (350)
                      +.+.....                        ...|...|.++  ++++.++++|+.|+.|++||+.+... ......|.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~  310 (464)
T 3v7d_B          234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKC-LYILSGHT  310 (464)
T ss_dssp             CCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEE-EEEECCCS
T ss_pred             CCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcE-EEEecCCC
Confidence            87665321                        12466667766  67889999999999999999986543 33445688


Q ss_pred             CcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeee
Q 018784          146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY  224 (350)
Q Consensus       146 ~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~  224 (350)
                      ..+.+++|.+ ++..+++|+.|++|++||+++++++..+.. ...+..+.+++ ..+++++.|+.|++||+++.......
T Consensus       311 ~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~-~~l~s~s~dg~v~vwd~~~~~~~~~~  388 (464)
T 3v7d_B          311 DRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFSY  388 (464)
T ss_dssp             SCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC-CEEEEEeCCCcEEEEECCCCceeeee
Confidence            8999999986 556788899999999999999999988875 46788888874 34555677899999999987766655


Q ss_pred             ecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEe-ecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          225 NMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGC-NKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~-~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      ..........+.+ +++++++|+ |+.|++||+.+++.+.. +..|...|++++|+ ...++++++.|+.+.+|-
T Consensus       389 ~~~~~~~~~~~~~-~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          389 HHTNLSAITTFYV-SDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             ECTTCCCEEEEEE-CSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             cCCCCccEEEEEe-CCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence            5444444455555 578888888 89999999999999876 67899999999997 445667777888776664

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=8.6e-35  Score=266.61  Aligned_cols=241  Identities=21%  Similarity=0.298  Sum_probs=199.4

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE   95 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~   95 (350)
                      ...|.+++|+|   +|++||+|+.|++|+|||..+++.+..+.+|...|.+++|+|++.++++++.|++|++||+.+++.
T Consensus       123 ~~~v~~v~~s~---dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~  199 (393)
T 1erj_A          123 DLYIRSVCFSP---DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC  199 (393)
T ss_dssp             CCBEEEEEECT---TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred             ceeEEEEEECC---CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee
Confidence            34589999986   999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             eeeeeccccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCCCCee------ecCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784           96 KHSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPRE------VGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (350)
Q Consensus        96 ~~~~~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~s~~~dg  168 (350)
                      ...+.+...+.+++|+| ++.+|++|+.|++|++||+.++......      ...|...|.+++|++ ++.++++|+.|+
T Consensus       200 ~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~d~  278 (393)
T 1erj_A          200 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDR  278 (393)
T ss_dssp             EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSEEEEEETTS
T ss_pred             EEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC-CCCEEEEEeCCC
Confidence            88888888999999999 8999999999999999999765432211      145788999999986 556788999999


Q ss_pred             eEEEEECCCCc------------eeEeec-CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCC-cee
Q 018784          169 GVRLWDARSGK------------IVQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNT-ESA  233 (350)
Q Consensus       169 ~i~iwd~~~~~------------~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~-~~~  233 (350)
                      +|++||+++..            +...+. +...+.+++++|++.+++++ .|+.|++||.++...+..+..+... ..+
T Consensus       279 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v  358 (393)
T 1erj_A          279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV  358 (393)
T ss_dssp             EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEE
Confidence            99999997642            233333 44679999999999887654 6899999999998887777655443 334


Q ss_pred             EecC-----CCCcEEEEecCCCeEEEEEcccC
Q 018784          234 SLEP-----KLGNIFIAGGEDMWVHVFDFHTG  260 (350)
Q Consensus       234 ~~~~-----~~~~~l~sg~~d~~i~v~d~~~~  260 (350)
                      .+.+     +++++|++|+.|++|++|++...
T Consensus       359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          359 AVANGSSLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             EecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence            4443     25789999999999999998653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=260.39  Aligned_cols=287  Identities=20%  Similarity=0.318  Sum_probs=223.9

Q ss_pred             eeccCccCCeEEEEECCCCc-EEEEeeC---CCeEEEeeCCCCCeee--eeeccccEeEEEEcCC---CCeEEEeeCCCe
Q 018784           55 GTFEGHKGAVWSCCLDANAL-FSASGSA---DFTAKLWDALTGDEKH--SFEHKHIVRACAFSED---THLLLTGGFEKI  125 (350)
Q Consensus        55 ~~l~gH~~~V~~v~~~~~~~-~l~s~s~---Dg~v~vWd~~~~~~~~--~~~h~~~V~~~~~~~~---~~~l~sg~~d~~  125 (350)
                      ..+.+|...|.+++|+|++. ++++|+.   ||.|++||+.+++...  .+.|...|.+++|+|+   +.+|++|+.|+.
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            45678999999999999885 5567776   9999999999887543  3478999999999998   699999999999


Q ss_pred             EEEEECCCCCCCCeeecCCCCcEEEEEEeC-----CCCcEEEEEeCCCeEEEEECCCCc-eeEeecC-----CCCeEEEE
Q 018784          126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLH-----SDQTILSSCTDSGGVRLWDARSGK-IVQTLET-----KSPVTSAE  194 (350)
Q Consensus       126 v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~s~~~dg~i~iwd~~~~~-~~~~~~~-----~~~v~~~~  194 (350)
                      |++||+............|...|.++.|.+     +++.++++++.|++|++||+++++ .+..+..     ...+.++.
T Consensus        92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~  171 (357)
T 3i2n_A           92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVA  171 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEE
T ss_pred             EEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEE
Confidence            999999877645566678899999998753     567788999999999999999886 6666653     23788888


Q ss_pred             ----EecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCCceeEecCC--CCcEEEEecCCCeEEEEEcccCeeEEeec
Q 018784          195 ----VSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPK--LGNIFIAGGEDMWVHVFDFHTGEQIGCNK  267 (350)
Q Consensus       195 ----~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~sg~~d~~i~v~d~~~~~~~~~~~  267 (350)
                          |+|++++++++ .++.|++||+++...............+.+.+.  +++++++|+.|+.|++||+++++.+..+.
T Consensus       172 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  251 (357)
T 3i2n_A          172 FGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFA  251 (357)
T ss_dssp             EECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEE
T ss_pred             EEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccccee
Confidence                67888887765 578999999999887665555555566677763  57899999999999999998877654443


Q ss_pred             -----CCCcCEEEEEEcCCCC-EEEEecCCCcEEEecCCCCCcccCCC--CCCCc--cccccccccccceeeeeeEEEcc
Q 018784          268 -----GHHGPVHCVRFSPGGE-SYASGSEDGTIRIWQTNPPNHEENHS--GTGNA--QTGKLKASTDEVTRKIEGFHINK  337 (350)
Q Consensus       268 -----~h~~~v~~l~~sp~~~-~lasgs~Dg~v~vw~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~i~~~~~~~  337 (350)
                           +|...|++++|+|+++ +|++|+.||.|++||+..........  +....  ...........+...|.++.++|
T Consensus       252 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  331 (357)
T 3i2n_A          252 SVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSP  331 (357)
T ss_dssp             EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECS
T ss_pred             eeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcC
Confidence                 8999999999999998 89999999999999987654332111  11111  11133444556777899999999


Q ss_pred             cchh
Q 018784          338 EGKA  341 (350)
Q Consensus       338 ~g~~  341 (350)
                      +|+.
T Consensus       332 ~~~~  335 (357)
T 3i2n_A          332 DKRG  335 (357)
T ss_dssp             SSTT
T ss_pred             CCCe
Confidence            9874

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=2.3e-34  Score=286.77  Aligned_cols=287  Identities=20%  Similarity=0.289  Sum_probs=236.2

Q ss_pred             EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~   90 (350)
                      .+.+|..+|.+++|+|   +|.+|++|+.|++|++|+..+++.+..+.+|.+.|++++|+|++.++++++.||+|++||+
T Consensus        50 ~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~  126 (814)
T 3mkq_A           50 SIQVTETPVRAGKFIA---RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW  126 (814)
T ss_dssp             EEECCSSCEEEEEEEG---GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEG
T ss_pred             EEecCCCcEEEEEEeC---CCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEEC
Confidence            4578999999999997   9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC-eeeee-eccccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCC-CCcEEEEEeC
Q 018784           91 LTGD-EKHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS-DQTILSSCTD  166 (350)
Q Consensus        91 ~~~~-~~~~~-~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~s~~~  166 (350)
                      .++. ....+ .|...|.+++|+| ++..|++++.|++|++||+..+.........+...+..++|.+. ++.++++++.
T Consensus       127 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~  206 (814)
T 3mkq_A          127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD  206 (814)
T ss_dssp             GGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT
T ss_pred             CCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC
Confidence            8773 33444 5888999999999 88999999999999999998766555555556578999999862 6678889999


Q ss_pred             CCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCC-CceeEecCCCCcEE
Q 018784          167 SGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIF  243 (350)
Q Consensus       167 dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l  243 (350)
                      ||+|++||+++++.+..+.. ...+..++|+|++.+++++ .++.|++||+.++..+..+..+.. ...+.+.+....++
T Consensus       207 dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  286 (814)
T 3mkq_A          207 DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNY  286 (814)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGE
T ss_pred             CCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceE
Confidence            99999999999998888874 5689999999999877665 589999999999888877766543 34455666544544


Q ss_pred             EEecCCCeEEEEEcccCee----------EE---------------------------------eecCCCcCEEEEEEcC
Q 018784          244 IAGGEDMWVHVFDFHTGEQ----------IG---------------------------------CNKGHHGPVHCVRFSP  280 (350)
Q Consensus       244 ~sg~~d~~i~v~d~~~~~~----------~~---------------------------------~~~~h~~~v~~l~~sp  280 (350)
                      ++.+.++.+.+|++..+..          +.                                 .+..+...+.+++|+|
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  366 (814)
T 3mkq_A          287 IASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP  366 (814)
T ss_dssp             EEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT
T ss_pred             EEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC
Confidence            5555577788888754321          11                                 1123445688999999


Q ss_pred             CCCEEEEecCCCcEEEecCCC
Q 018784          281 GGESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       281 ~~~~lasgs~Dg~v~vw~~~~  301 (350)
                      +++++++++ |+.+.+|++..
T Consensus       367 dg~~la~~~-~~~~~i~~~~~  386 (814)
T 3mkq_A          367 NGRFVTVVG-DGEYVIYTALA  386 (814)
T ss_dssp             TSSEEEEEE-TTEEEEEETTT
T ss_pred             CCCEEEEec-CCEEEEEECcc
Confidence            999999988 89999999753

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=7.1e-35  Score=286.08  Aligned_cols=242  Identities=25%  Similarity=0.355  Sum_probs=207.3

Q ss_pred             EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~   90 (350)
                      .+.||..+|.+++|+|   +|++|+||+.|++|+|||+.+++.+..+.+|...|.+++|++++.+++|+|.|++|++||.
T Consensus       425 ~~~~h~~~v~~v~~s~---~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~  501 (694)
T 3dm0_A          425 RLTGHSHFVEDVVLSS---DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT  501 (694)
T ss_dssp             EEECCSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred             eecCCCCcEEEEEECC---CCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEC
Confidence            4689999999999986   9999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCCCeeeee----eccccEeEEEEcCCC--CeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEE
Q 018784           91 LTGDEKHSF----EHKHIVRACAFSEDT--HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (350)
Q Consensus        91 ~~~~~~~~~----~h~~~V~~~~~~~~~--~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~  164 (350)
                      .........    .|...|.+++|+|++  ..|++++.|++|++||+.+... ......|.+.|.+++|++ ++.++++|
T Consensus       502 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~-~~~~~~h~~~v~~v~~sp-dg~~l~sg  579 (694)
T 3dm0_A          502 LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL-RSTLAGHTGYVSTVAVSP-DGSLCASG  579 (694)
T ss_dssp             TSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECT-TSSEEEEE
T ss_pred             CCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE-EEEEcCCCCCEEEEEEeC-CCCEEEEE
Confidence            644332221    478889999999987  5799999999999999986543 344567889999999986 56788899


Q ss_pred             eCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCC---------------
Q 018784          165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN---------------  229 (350)
Q Consensus       165 ~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~---------------  229 (350)
                      +.|++|++||+++++.+..+..+..+.+++|+|++.+++++.++.|++||+++...+..+.....               
T Consensus       580 ~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  659 (694)
T 3dm0_A          580 GKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATK  659 (694)
T ss_dssp             ETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC---------------
T ss_pred             eCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCC
Confidence            99999999999999999998888899999999999999999888999999999877765543211               


Q ss_pred             -----CceeEecCCCCcEEEEecCCCeEEEEEcc
Q 018784          230 -----TESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (350)
Q Consensus       230 -----~~~~~~~~~~~~~l~sg~~d~~i~v~d~~  258 (350)
                           ...+.+++ ++++|++|+.|+.|++||+.
T Consensus       660 ~~~~~~~~l~~sp-dg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          660 RKVIYCTSLNWSA-DGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             -CCCCEEEEEECT-TSSEEEEEETTSEEEEEEC-
T ss_pred             ceeEEeeeEEEcC-CCCEEEEEcCCCeEEEEecc
Confidence                 12234444 68999999999999999985

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.4e-35  Score=271.80  Aligned_cols=248  Identities=15%  Similarity=0.165  Sum_probs=181.4

Q ss_pred             CCccEEEEEeCCCCeeEeeCCCCce-----eeeccCccCCeEEEEECC--------CCcEEEEeeCCCeEEEeeCCCCCe
Q 018784           29 PDGFFLVSASKDSSPMLRNGETGDW-----IGTFEGHKGAVWSCCLDA--------NALFSASGSADFTAKLWDALTGDE   95 (350)
Q Consensus        29 ~dg~~lasgs~d~~v~iw~~~~~~~-----~~~l~gH~~~V~~v~~~~--------~~~~l~s~s~Dg~v~vWd~~~~~~   95 (350)
                      +++.+||+|+.|++|+|||..+++.     +..+.||++.|++++|+|        ++++|||+|.|++|||||+.++.+
T Consensus        99 ~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~  178 (393)
T 4gq1_A           99 VYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGP  178 (393)
T ss_dssp             EEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEE
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCce
Confidence            4678999999999999999887754     456899999999999987        789999999999999999977664


Q ss_pred             e-eeeeccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCCCCee------------------------ecCCCCcEE
Q 018784           96 K-HSFEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPRE------------------------VGNSSGSIR  149 (350)
Q Consensus        96 ~-~~~~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~~~------------------------~~~~~~~v~  149 (350)
                      . ..+.|...|.+++|+|++ .+|++|+.|++|++||+.++......                        ...|...+.
T Consensus       179 ~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~  258 (393)
T 4gq1_A          179 ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLA  258 (393)
T ss_dssp             EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCS
T ss_pred             eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccce
Confidence            4 456799999999999987 47999999999999999765432211                        124566788


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCC
Q 018784          150 TVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPC  228 (350)
Q Consensus       150 ~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~  228 (350)
                      ++.|.++++..+++++.|+++++||+++++....+..+ ..+..+.+.|+.+.+                      ....
T Consensus       259 ~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------------------~~~~  316 (393)
T 4gq1_A          259 NVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGI----------------------SLFP  316 (393)
T ss_dssp             EEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEE----------------------CSSC
T ss_pred             eeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccc----------------------cccC
Confidence            89999888889999999999999999887765554332 233334444432221                      1111


Q ss_pred             CCceeEecCC-CCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          229 NTESASLEPK-LGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       229 ~~~~~~~~~~-~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                      ......+.+. ++.++++|+.|+.|++||+.+++.+..+.+|..+|.+++|+|+|++||+++.|| +.+|++
T Consensus       317 ~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          317 SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            1222233333 445677889999999999999998888889999999999999999999999877 555543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=3.2e-34  Score=265.88  Aligned_cols=259  Identities=20%  Similarity=0.312  Sum_probs=207.3

Q ss_pred             eeccCCceeEEEecccCCC-ccEEEEEeCCCCeeEeeCCC----------CceeeeccCccCCeEEEEECCCCc-EEEEe
Q 018784           12 CHGHSRPVVDLFYSPITPD-GFFLVSASKDSSPMLRNGET----------GDWIGTFEGHKGAVWSCCLDANAL-FSASG   79 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~d-g~~lasgs~d~~v~iw~~~~----------~~~~~~l~gH~~~V~~v~~~~~~~-~l~s~   79 (350)
                      ..+|.++|++++|+|   + +.+||+++.|+.|+||+..+          .+.+..+.+|...|.+++|++++. +|++|
T Consensus       124 ~~~h~~~v~~l~~~p---~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          124 KINHEGEVNRARYMP---QNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEESSCCSEEEEET---TEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEcCCCcEEEEEECC---CCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            468999999999997   5 68999999999999999876          677888999999999999999988 99999


Q ss_pred             eCCCeEEEeeCCCCCe-------eeee-eccccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCC--CCCeeecCCCCcE
Q 018784           80 SADFTAKLWDALTGDE-------KHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPD--APPREVGNSSGSI  148 (350)
Q Consensus        80 s~Dg~v~vWd~~~~~~-------~~~~-~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~--~~~~~~~~~~~~v  148 (350)
                      +.||+|++||+.++..       ...+ .|...|.+++|+| ++.+|++++.|+.|++||+....  ........|...+
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  280 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV  280 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence            9999999999987432       1222 5888999999999 77899999999999999998653  3444556788899


Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEECCC-CceeEeec-CCCCeEEEEEecCCc-EE-EEEcCCcEEEEECCCcceeeee
Q 018784          149 RTVAWLHSDQTILSSCTDSGGVRLWDARS-GKIVQTLE-TKSPVTSAEVSRDGR-YI-TTADGSSVKFWDANHFGLVKGY  224 (350)
Q Consensus       149 ~~~~~~~~~~~~~~s~~~dg~i~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~-~l-~~~~~~~i~vwd~~~~~~~~~~  224 (350)
                      .+++|++.+..++++|+.||+|++||+++ ++++..+. +...+.+++|+|++. ++ +++.++.|++||++........
T Consensus       281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  360 (430)
T 2xyi_A          281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST  360 (430)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence            99999988888999999999999999998 45566665 467899999999874 33 3445777888877543211100


Q ss_pred             ecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCC-EEEEecCCCcEEEecCCC
Q 018784          225 NMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGE-SYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~-~lasgs~Dg~v~vw~~~~  301 (350)
                      .          ..          .+        .....+..+.+|...|++++|+|+++ +|++++.|+.|+||++..
T Consensus       361 ~----------~~----------~~--------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          361 E----------DA----------ED--------GPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             H----------HH----------HH--------CCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred             c----------cc----------cc--------CCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence            0          00          00        01244556678999999999999999 899999999999999753

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.6e-33  Score=260.35  Aligned_cols=262  Identities=15%  Similarity=0.232  Sum_probs=212.1

Q ss_pred             eEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (350)
Q Consensus        10 ~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd   89 (350)
                      +.+.+|.+.|++|+|+|   +|.+||+|+.|++|+|||..+++++..+.+|...|.++++  ++.++++|+.|+.+++||
T Consensus       141 ~~~~~~~~~V~sv~fsp---dg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d  215 (420)
T 4gga_A          141 LQMEQPGEYISSVAWIK---EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHD  215 (420)
T ss_dssp             EECCSTTCCEEEEEECT---TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE
T ss_pred             EEecCCCCcEEEEEECC---CCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEee
Confidence            34468999999999987   9999999999999999999999999999999999988776  568999999999999999


Q ss_pred             CCCCCe-eeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCC---CeeecCCCCcEEEEEEeCCCCcEEEE-
Q 018784           90 ALTGDE-KHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP---PREVGNSSGSIRTVAWLHSDQTILSS-  163 (350)
Q Consensus        90 ~~~~~~-~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~s-  163 (350)
                      ...... ...+ .|...+..+.++|++.++++++.|+.+++|++......   ......+.+.|.+++|.+.+..++++ 
T Consensus       216 ~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~  295 (420)
T 4gga_A          216 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG  295 (420)
T ss_dssp             TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEE
T ss_pred             ecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEE
Confidence            876543 3333 58899999999999999999999999999999765432   34456788899999999888887765 


Q ss_pred             -EeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE---cCCcEEEEECCCcceeeeeecCCCCc-eeEecCC
Q 018784          164 -CTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA---DGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPK  238 (350)
Q Consensus       164 -~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~  238 (350)
                       |+.|++|++||++++++...+..+..+.++.|+++++.++++   .++.|++||.++..++..+..+.... .+.+.| 
T Consensus       296 ~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-  374 (420)
T 4gga_A          296 GGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-  374 (420)
T ss_dssp             ECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-
T ss_pred             eecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-
Confidence             457999999999999999999999999999999999877654   47899999999999988887665443 445555 


Q ss_pred             CCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEE
Q 018784          239 LGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVR  277 (350)
Q Consensus       239 ~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~  277 (350)
                      ++++|++|+.|++|++||+.+.++......+...+....
T Consensus       375 dg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s  413 (420)
T 4gga_A          375 DGATVASAAADETLRLWRCFELDPARRREREKASAAKSS  413 (420)
T ss_dssp             TSSCEEEEETTTEEEEECCSCSSCC--------------
T ss_pred             CCCEEEEEecCCeEEEEECCCCCccchhhhccCCccccc
Confidence            689999999999999999987766555554544443333

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-35  Score=273.62  Aligned_cols=297  Identities=10%  Similarity=0.060  Sum_probs=222.1

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~   92 (350)
                      +.-...|.+|+|+|   ||+++||+|.|++|+  |++.+   ..+++|.+.|++++|+|+|       .|+.+++|+...
T Consensus        12 ~~~~~~v~sv~~Sp---DG~~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~   76 (588)
T 2j04_A           12 KEFEDWKNNLTWAR---DGTLYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE-------FENKLDFELAQQ   76 (588)
T ss_dssp             CCCSSSSCCEEECT---TSCEEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCS
T ss_pred             hHhhccEEEEEECC---CCCEEEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC-------CcceEEEEeCCC
Confidence            34567899999987   999999999999999  65544   4558999999999999998       567766666432


Q ss_pred             CCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCC-----cEEEEEEeCCCCcEEEEEeCC
Q 018784           93 GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG-----SIRTVAWLHSDQTILSSCTDS  167 (350)
Q Consensus        93 ~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~s~~~d  167 (350)
                       .....+.|...|.+++|+|+|++||+++.||.|++||...   ...... |..     .+.+++|+| ++.++++|+.|
T Consensus        77 -~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~D  150 (588)
T 2j04_A           77 -NGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNED  150 (588)
T ss_dssp             -SCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETT
T ss_pred             -ceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCC
Confidence             2333446788899999999999999999999999999643   222223 333     599999986 56788889999


Q ss_pred             CeEEEEECCCCce-------eEeec-----CCCCeEEEEEecCCcEEEEEcCCcEEEEECCCccee---eeee-cC-CCC
Q 018784          168 GGVRLWDARSGKI-------VQTLE-----TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV---KGYN-MP-CNT  230 (350)
Q Consensus       168 g~i~iwd~~~~~~-------~~~~~-----~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~---~~~~-~~-~~~  230 (350)
                      |+|++||+.+++.       +.++.     +...|.+++|+|+| +++++.|+.|++||+......   +.+. .+ ...
T Consensus       151 GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V  229 (588)
T 2j04_A          151 GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKI  229 (588)
T ss_dssp             SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCC
T ss_pred             CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcE
Confidence            9999999998853       45553     23589999999999 888889999999999876632   2332 22 234


Q ss_pred             ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEE--cCCCCEEEEecCCCcEEEecCCCCCcccCC
Q 018784          231 ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRF--SPGGESYASGSEDGTIRIWQTNPPNHEENH  308 (350)
Q Consensus       231 ~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~--sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~  308 (350)
                      ..+.+.   ++++++++ +++|++||+.++.......+|...|+.++|  +|++..++++++||+ ++|..+.-.  ...
T Consensus       230 ~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~--~sp  302 (588)
T 2j04_A          230 TDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELH--VTA  302 (588)
T ss_dssp             CCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEE--EEC
T ss_pred             EEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEE--ECC
Confidence            455555   57888887 699999999988875445489999999999  999999999999999 999875211  000


Q ss_pred             CC----C-------CCccccccccccccceeeeeeEEEcccch
Q 018784          309 SG----T-------GNAQTGKLKASTDEVTRKIEGFHINKEGK  340 (350)
Q Consensus       309 ~~----~-------~~~~~~~~~~~~~~~~~~i~~~~~~~~g~  340 (350)
                      .+    .       .+.+ +......+. ...|.|..++|||+
T Consensus       303 d~~l~a~~d~~v~lW~~~-g~~l~~~~~-~~~I~~va~SPdG~  343 (588)
T 2j04_A          303 DNIIAPYLEKKFKKWSTI-WNEFNNYET-TLVIHGISLSPDGY  343 (588)
T ss_dssp             CCSSHHHHHHHHHHTTTT-TTSSSSSCC-EEEEEEEEECTTSS
T ss_pred             CceEEEEcCCEEEEEECC-CCceeeecc-ceEEEEEEECCCCC
Confidence            00    0       0111 111222223 66689999999995

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.8e-34  Score=262.55  Aligned_cols=283  Identities=18%  Similarity=0.265  Sum_probs=220.8

Q ss_pred             eeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC------eeee-eeccccEeEEEEcCC----C---CeEE
Q 018784           53 WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD------EKHS-FEHKHIVRACAFSED----T---HLLL  118 (350)
Q Consensus        53 ~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~------~~~~-~~h~~~V~~~~~~~~----~---~~l~  118 (350)
                      ....+.+|.+.|++++|++  .++++++.||+|++||+.+++      .... ..|...|.+++|+|+    +   .+|+
T Consensus         8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~   85 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   85 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence            4567899999999999988  899999999999999998877      3333 468999999999999    9   9999


Q ss_pred             EeeCCCeEEEEECCCCCCC----CeeecCC-----CCcEEEEEEe----CCCCcEEEEEeCCCeEEEEECCC------Cc
Q 018784          119 TGGFEKILRIFDLNRPDAP----PREVGNS-----SGSIRTVAWL----HSDQTILSSCTDSGGVRLWDARS------GK  179 (350)
Q Consensus       119 sg~~d~~v~vwd~~~~~~~----~~~~~~~-----~~~v~~~~~~----~~~~~~~~s~~~dg~i~iwd~~~------~~  179 (350)
                      +++.|+.|++||+......    ......+     ...|.+++|.    +.+...+++++.|+.|++||+++      ++
T Consensus        86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  165 (397)
T 1sq9_A           86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  165 (397)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence            9999999999999765541    2333445     4889999998    54443288899999999999998      66


Q ss_pred             eeE-----eec--------CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeec-------CCCCceeEecCC
Q 018784          180 IVQ-----TLE--------TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNM-------PCNTESASLEPK  238 (350)
Q Consensus       180 ~~~-----~~~--------~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~-------~~~~~~~~~~~~  238 (350)
                      .+.     .+.        +...+.+++|+|++ +++++ .++.|++||+++...+..+..       ......+.+.+ 
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~-  243 (397)
T 1sq9_A          166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-  243 (397)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-
T ss_pred             eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECC-
Confidence            554     553        36789999999999 66655 578999999999888887776       33344555665 


Q ss_pred             CCcEEEEecCC---CeEEEEEcccCeeEEeecC-------------CCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCC
Q 018784          239 LGNIFIAGGED---MWVHVFDFHTGEQIGCNKG-------------HHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPP  302 (350)
Q Consensus       239 ~~~~l~sg~~d---~~i~v~d~~~~~~~~~~~~-------------h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~  302 (350)
                      ++++|++++.|   +.|++||+.+++.+..+.+             |...|.+++|+|++++|++|+.|+.|++||+...
T Consensus       244 ~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  323 (397)
T 1sq9_A          244 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  323 (397)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             CCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            58999999999   9999999999999999988             9999999999999999999999999999999765


Q ss_pred             CcccCCC------CCCC-ccccccccccccceeeeeeEEEcccch
Q 018784          303 NHEENHS------GTGN-AQTGKLKASTDEVTRKIEGFHINKEGK  340 (350)
Q Consensus       303 ~~~~~~~------~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~g~  340 (350)
                      +......      ++.. ...+.. .....+...|.++.++|+|+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~v~~~~~~~~g~  367 (397)
T 1sq9_A          324 ERITTLNMHCDDIEIEEDILAVDE-HGDSLAEPGVFDVKFLKKGW  367 (397)
T ss_dssp             EEEEEEECCGGGCSSGGGCCCBCT-TSCBCSSCCEEEEEEECTTT
T ss_pred             ceeEEEecccCcccchhhhhcccc-ccccccCCceeEEEeccccc
Confidence            5433322      1100 000000 00122367789999999983

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.9e-35  Score=288.46  Aligned_cols=248  Identities=18%  Similarity=0.276  Sum_probs=197.2

Q ss_pred             eEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCC--CCceeeeccCccCCeEEEEECCC--CcEEEEeeCCCeE
Q 018784           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE--TGDWIGTFEGHKGAVWSCCLDAN--ALFSASGSADFTA   85 (350)
Q Consensus        10 ~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~--~~~~~~~l~gH~~~V~~v~~~~~--~~~l~s~s~Dg~v   85 (350)
                      .++.||.++|++++|+|   +|.+|++|+.|++|+||+..  +++.+..+.+|.+.|++++|+++  +.++++|+.||+|
T Consensus         3 ~~l~gH~~~V~~l~~s~---dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I   79 (753)
T 3jro_A            3 VIANAHNELIHDAVLDY---YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   79 (753)
T ss_dssp             -----CCCCEEEECCCS---SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred             eecccCcceeEEEEECC---CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeE
Confidence            35689999999999886   89999999999999999987  56788899999999999999987  9999999999999


Q ss_pred             EEeeCCCCC--eeeee-eccccEeEEEEcCC--CCeEEEeeCCCeEEEEECCCCCC-CCeeecCCCCcEEEEEEeCC---
Q 018784           86 KLWDALTGD--EKHSF-EHKHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDA-PPREVGNSSGSIRTVAWLHS---  156 (350)
Q Consensus        86 ~vWd~~~~~--~~~~~-~h~~~V~~~~~~~~--~~~l~sg~~d~~v~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~---  156 (350)
                      ++||+.++.  ....+ .|...|.+++|+|+  +.++++|+.|+.|++||+..... .......|...+.+++|.+.   
T Consensus        80 ~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~  159 (753)
T 3jro_A           80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  159 (753)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--
T ss_pred             EEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccc
Confidence            999998875  33333 58899999999999  99999999999999999987633 23445678889999999875   


Q ss_pred             ---------CCcEEEEEeCCCeEEEEECCCCc----eeEeec-CCCCeEEEEEecC---CcEEEEEcCCcEEEEECCCcc
Q 018784          157 ---------DQTILSSCTDSGGVRLWDARSGK----IVQTLE-TKSPVTSAEVSRD---GRYITTADGSSVKFWDANHFG  219 (350)
Q Consensus       157 ---------~~~~~~s~~~dg~i~iwd~~~~~----~~~~~~-~~~~v~~~~~~~~---~~~l~~~~~~~i~vwd~~~~~  219 (350)
                               ++.++++|+.||+|++||++++.    ....+. +..++.+++|+|+   +.++                 
T Consensus       160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l-----------------  222 (753)
T 3jro_A          160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL-----------------  222 (753)
T ss_dssp             -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE-----------------
T ss_pred             cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEE-----------------
Confidence                     56788899999999999998773    334444 3467888888887   4444                 


Q ss_pred             eeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCe-----eEEeecCCCcCEEEEEEcCCCCEEEEecCCCcE
Q 018784          220 LVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE-----QIGCNKGHHGPVHCVRFSPGGESYASGSEDGTI  294 (350)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~-----~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v  294 (350)
                                              ++|+.|+.|++||+.++.     .......|...|++++|+|++++|++|+.||.|
T Consensus       223 ------------------------~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I  278 (753)
T 3jro_A          223 ------------------------ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV  278 (753)
T ss_dssp             ------------------------EEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCE
T ss_pred             ------------------------EEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEE
Confidence                                    444444444444444332     122334688899999999999999999999999


Q ss_pred             EEecCCC
Q 018784          295 RIWQTNP  301 (350)
Q Consensus       295 ~vw~~~~  301 (350)
                      ++|++..
T Consensus       279 ~vwd~~~  285 (753)
T 3jro_A          279 TLWKENL  285 (753)
T ss_dssp             ECCBCCS
T ss_pred             EEEecCC
Confidence            9999874

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.6e-33  Score=249.52  Aligned_cols=283  Identities=19%  Similarity=0.315  Sum_probs=211.4

Q ss_pred             CCCCceeeeccCccCCeEEEEECCC-CcEEEEeeCCCeEEEeeCCCCCe-----eeee-eccccEeEEEEcCCCCeEEEe
Q 018784           48 GETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALTGDE-----KHSF-EHKHIVRACAFSEDTHLLLTG  120 (350)
Q Consensus        48 ~~~~~~~~~l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~vWd~~~~~~-----~~~~-~h~~~V~~~~~~~~~~~l~sg  120 (350)
                      .+..++..+|+||++.|++++|+|+ +.+|+|||.|++|+|||+.+.+.     ...+ .|...|.+++|+|++++|+++
T Consensus        25 ~~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~  104 (340)
T 4aow_A           25 TEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG  104 (340)
T ss_dssp             -CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CCceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence            3445566789999999999999997 68999999999999999876542     2233 488999999999999999999


Q ss_pred             eCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEee-c-CCCCeEEEEEecC
Q 018784          121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-E-TKSPVTSAEVSRD  198 (350)
Q Consensus       121 ~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~-~-~~~~v~~~~~~~~  198 (350)
                      +.|+.|++|+....... .....+...+..+.+.+ .+..+++++.|+.+++||+......... . +...+..++++++
T Consensus       105 ~~d~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~  182 (340)
T 4aow_A          105 SWDGTLRLWDLTTGTTT-RRFVGHTKDVLSVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN  182 (340)
T ss_dssp             ETTSEEEEEETTTTEEE-EEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSC
T ss_pred             cccccceEEeeccccee-eeecCCCCceeEEEEee-cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccC
Confidence            99999999998754332 23344555666666654 5567788999999999999876543332 2 3467888999876


Q ss_pred             C--cEE-EEEcCCcEEEEECCCcceeeeeecCCCC-ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEE
Q 018784          199 G--RYI-TTADGSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVH  274 (350)
Q Consensus       199 ~--~~l-~~~~~~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~  274 (350)
                      +  .++ +++.++.|++||+++...+..+..+... ..+.+.+ ++++|++|+.|+.|++||+.+++.+..+..+ ..|.
T Consensus       183 ~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~  260 (340)
T 4aow_A          183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIIN  260 (340)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEE
T ss_pred             CCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEE
Confidence            5  344 4567899999999998888777655443 3445555 6899999999999999999999988877754 5799


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccchh
Q 018784          275 CVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKA  341 (350)
Q Consensus       275 ~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~  341 (350)
                      +++|+|++. +++++.|+.|++||+............      ........+...|.++.++|||+.
T Consensus       261 ~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~~~~h~~~v~~l~~s~dg~~  320 (340)
T 4aow_A          261 ALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQE------VISTSSKAEPPQCTSLAWSADGQT  320 (340)
T ss_dssp             EEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------------CCCCCEEEEEECTTSSE
T ss_pred             eeecCCCCc-eeeccCCCEEEEEECCCCeEEEecccc------ceeeeccCCCCCEEEEEECCCCCE
Confidence            999999876 556677999999998765433222111      111223446667888889998863

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=5.8e-34  Score=255.03  Aligned_cols=251  Identities=16%  Similarity=0.159  Sum_probs=208.4

Q ss_pred             eeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC----eeeeeeccccEeEEEEcCCCC-eEEEeeCCCeEEEE
Q 018784           55 GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD----EKHSFEHKHIVRACAFSEDTH-LLLTGGFEKILRIF  129 (350)
Q Consensus        55 ~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~----~~~~~~h~~~V~~~~~~~~~~-~l~sg~~d~~v~vw  129 (350)
                      ....+|.+.|.+++|+|++.++++++.|+.|++||+.++.    ......|...|.+++|+|+++ +|++|+.|+.|++|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence            3456899999999999999999999999999999998877    555668999999999999999 99999999999999


Q ss_pred             EC-CCCCCCCeeecC--CCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCC---------CceeEeecCCCCeEEEEEec
Q 018784          130 DL-NRPDAPPREVGN--SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS---------GKIVQTLETKSPVTSAEVSR  197 (350)
Q Consensus       130 d~-~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~v~~~~~~~  197 (350)
                      |+ .....  .....  |...|.+++|.+  +.++++++.|++|++||+++         ++++..+.+...+.+++++|
T Consensus        85 d~~~~~~~--~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  160 (342)
T 1yfq_A           85 DLIGSPSF--QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             CSSSSSSE--EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             EeccCCce--EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecC
Confidence            99 75432  44556  889999999997  67888899999999999998         77777777888999999999


Q ss_pred             CCcEEEEEcCCcEEEEECCC-ccee-eeeec--CCCCceeEecCCCCcEEEEecCCCeEEEEEcccC------eeEEeec
Q 018784          198 DGRYITTADGSSVKFWDANH-FGLV-KGYNM--PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG------EQIGCNK  267 (350)
Q Consensus       198 ~~~~l~~~~~~~i~vwd~~~-~~~~-~~~~~--~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~------~~~~~~~  267 (350)
                      ++ +++++.++.|++||+++ .... .....  ......+.+.+.+++++++++.|+.|++|++...      +....+.
T Consensus       161 ~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  239 (342)
T 1yfq_A          161 SR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR  239 (342)
T ss_dssp             SE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred             Cc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence            88 77777899999999987 4432 11221  2223445555525789999999999999999876      6677777


Q ss_pred             CCCc---------CEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCC
Q 018784          268 GHHG---------PVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSG  310 (350)
Q Consensus       268 ~h~~---------~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~  310 (350)
                      +|..         .|.+++|+|++++|++|+.||.|++||+...+......+
T Consensus       240 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  291 (342)
T 1yfq_A          240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             cccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhc
Confidence            7755         999999999999999999999999999976665444333

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.3e-33  Score=257.41  Aligned_cols=254  Identities=15%  Similarity=0.108  Sum_probs=203.2

Q ss_pred             eeCCCCceeeeccCccCCeEEEEECCCC-cEEEEeeCCCeEEEeeCCCCCeeeee---eccccEeEEEEcC-CCCeEEEe
Q 018784           46 RNGETGDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGDEKHSF---EHKHIVRACAFSE-DTHLLLTG  120 (350)
Q Consensus        46 w~~~~~~~~~~l~gH~~~V~~v~~~~~~-~~l~s~s~Dg~v~vWd~~~~~~~~~~---~h~~~V~~~~~~~-~~~~l~sg  120 (350)
                      |+..+.+....+.+|.+.|.+++|++++ .++++|+.||.|++||+.+++....+   .|...|.+++|+| ++++|+++
T Consensus        58 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~  137 (383)
T 3ei3_B           58 RSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS  137 (383)
T ss_dssp             HHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE
T ss_pred             ccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE
Confidence            4445667788899999999999999998 99999999999999999988766665   4899999999999 78999999


Q ss_pred             eCCCeEEEEECCCCCCCCeeec---CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec-CCCCeEEEEEe
Q 018784          121 GFEKILRIFDLNRPDAPPREVG---NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVS  196 (350)
Q Consensus       121 ~~d~~v~vwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~  196 (350)
                      +.|+.|++||+...  ......   .+...+.+++|++ ++.++++++.|++|++||++ ++.+..+. +...+.+++|+
T Consensus       138 ~~d~~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~  213 (383)
T 3ei3_B          138 SIRGATTLRDFSGS--VIQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFN  213 (383)
T ss_dssp             ETTTEEEEEETTSC--EEEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEEC
T ss_pred             eCCCEEEEEECCCC--ceEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEEC
Confidence            99999999999842  222222   2347799999986 55688889999999999994 66666665 46789999999


Q ss_pred             cCCc-EEE-EEcCCcEEEEECCC----cceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCC
Q 018784          197 RDGR-YIT-TADGSSVKFWDANH----FGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHH  270 (350)
Q Consensus       197 ~~~~-~l~-~~~~~~i~vwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~  270 (350)
                      |+++ +++ ++.|+.|++||+++    ..++..+........+.+.+.++++|++++.|+.|++||+.+++.+..+.+|.
T Consensus       214 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  293 (383)
T 3ei3_B          214 PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP  293 (383)
T ss_dssp             SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred             CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc
Confidence            9997 555 45689999999987    55555554444455667776468999999999999999999887766655443


Q ss_pred             -----------------cCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784          271 -----------------GPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       271 -----------------~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~  305 (350)
                                       ..+..++|+|++++  +|+.|+.|++||+...+..
T Consensus       294 ~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~  343 (383)
T 3ei3_B          294 HRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLV  343 (383)
T ss_dssp             BCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEE
T ss_pred             ccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCcee
Confidence                             34455777777776  8899999999998766543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.6e-33  Score=243.72  Aligned_cols=244  Identities=21%  Similarity=0.372  Sum_probs=199.3

Q ss_pred             CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEE
Q 018784           51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIF  129 (350)
Q Consensus        51 ~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vw  129 (350)
                      .++..++.+|.+.|.+++| +++.++++++.||.|++||+.++.....+ .|...|.+++|+|++++|++++.|+.|++|
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~   86 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV   86 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence            4677899999999999999 99999999999999999999887755554 588999999999999999999999999999


Q ss_pred             ECCCCC--CCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec-CCCCeEEEEEec-CCcEEE-E
Q 018784          130 DLNRPD--APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSR-DGRYIT-T  204 (350)
Q Consensus       130 d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~l~-~  204 (350)
                      ++....  ........|...+.++.|   ++.++++++.|++|++||  .++....+. +..++..+.+.| ++.+++ +
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  161 (313)
T 3odt_A           87 PLFATSGEDPLYTLIGHQGNVCSLSF---QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTA  161 (313)
T ss_dssp             ETTCCTTSCC-CEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred             EeeecCCCCcccchhhcccCEEEEEe---cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEE
Confidence            987643  223455678889999998   355788999999999999  556555555 457899999987 676665 4


Q ss_pred             EcCCcEEEEECCCcceeeeeec--CCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCC
Q 018784          205 ADGSSVKFWDANHFGLVKGYNM--PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGG  282 (350)
Q Consensus       205 ~~~~~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~  282 (350)
                      +.++.|++||..  .....+..  ......+.+.+. +. +++++.|+.|++||+.+++.+..+.+|...|.+++|+|++
T Consensus       162 ~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~-~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~  237 (313)
T 3odt_A          162 SADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDD-GH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG  237 (313)
T ss_dssp             ETTSCEEEEETT--EEEEEECSSCSSCEEEEEEEET-TE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred             ECCCCEEEEecC--ceEEEEeccCcccEEEEEEcCC-Ce-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC
Confidence            568999999944  33444433  222334455543 44 9999999999999999999999999999999999999999


Q ss_pred             CEEEEecCCCcEEEecCCCCCcc
Q 018784          283 ESYASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       283 ~~lasgs~Dg~v~vw~~~~~~~~  305 (350)
                       .|++++.||.|++||+...+..
T Consensus       238 -~l~~~~~dg~v~iwd~~~~~~~  259 (313)
T 3odt_A          238 -DIVSCGEDRTVRIWSKENGSLK  259 (313)
T ss_dssp             -CEEEEETTSEEEEECTTTCCEE
T ss_pred             -CEEEEecCCEEEEEECCCCcee
Confidence             6899999999999998766544

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=5.7e-33  Score=250.38  Aligned_cols=278  Identities=15%  Similarity=0.237  Sum_probs=215.9

Q ss_pred             eeCCCCceeeeccCccCCeEEEEECCC---CcEEEEeeCCCeEEEeeCCC-CCee-ee-eeccccEeEEEEcCCCCeEEE
Q 018784           46 RNGETGDWIGTFEGHKGAVWSCCLDAN---ALFSASGSADFTAKLWDALT-GDEK-HS-FEHKHIVRACAFSEDTHLLLT  119 (350)
Q Consensus        46 w~~~~~~~~~~l~gH~~~V~~v~~~~~---~~~l~s~s~Dg~v~vWd~~~-~~~~-~~-~~h~~~V~~~~~~~~~~~l~s  119 (350)
                      |+....+.+..+.+|.+.|.+++|+|+   +.+|++|+.||.|++||+.+ +... .. ..|...|.+++|+|++++|++
T Consensus        24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  103 (368)
T 3mmy_A           24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT  103 (368)
T ss_dssp             CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred             CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence            344566778889999999999999999   69999999999999999987 4443 33 358999999999999999999


Q ss_pred             eeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEe-CCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecC
Q 018784          120 GGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL-HSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRD  198 (350)
Q Consensus       120 g~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~  198 (350)
                      ++.|+.|++||+.+...  .....|...+.+++|. .+++.++++++.|++|++||+++++.+..+..+..+..+.+.++
T Consensus       104 ~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  181 (368)
T 3mmy_A          104 ASCDKTAKMWDLSSNQA--IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYP  181 (368)
T ss_dssp             EETTSEEEEEETTTTEE--EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETT
T ss_pred             EcCCCcEEEEEcCCCCc--eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCC
Confidence            99999999999986543  2345688899999994 35677888999999999999999999999988888888877765


Q ss_pred             CcEEEEEcCCcEEEEECCCcceeeeeec-C--CCCceeEecCC---CCcEEEEecCCCeEEEEEcccC---eeEEeecCC
Q 018784          199 GRYITTADGSSVKFWDANHFGLVKGYNM-P--CNTESASLEPK---LGNIFIAGGEDMWVHVFDFHTG---EQIGCNKGH  269 (350)
Q Consensus       199 ~~~l~~~~~~~i~vwd~~~~~~~~~~~~-~--~~~~~~~~~~~---~~~~l~sg~~d~~i~v~d~~~~---~~~~~~~~h  269 (350)
                       .++++..++.+++||++.......... .  .......+.+.   ....+++|+.|+.|++||+...   ..+..+.+|
T Consensus       182 -~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~  260 (368)
T 3mmy_A          182 -MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCH  260 (368)
T ss_dssp             -EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECS
T ss_pred             -eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeee
Confidence             556667788999999987543322211 1  11122222211   1244999999999999999887   456677777


Q ss_pred             Cc------------CEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcc
Q 018784          270 HG------------PVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINK  337 (350)
Q Consensus       270 ~~------------~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  337 (350)
                      ..            +|.+++|+|++++|++|+.||.|++||+.......               ....+...|.++.++|
T Consensus       261 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~---------------~~~~~~~~v~~~~~s~  325 (368)
T 3mmy_A          261 RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK---------------TSEQLDQPISACCFNH  325 (368)
T ss_dssp             EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE---------------ECCCCSSCEEEEEECT
T ss_pred             ecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE---------------EecCCCCCceEEEECC
Confidence            76            79999999999999999999999999986544332               2233455677777777


Q ss_pred             cchh
Q 018784          338 EGKA  341 (350)
Q Consensus       338 ~g~~  341 (350)
                      ||+.
T Consensus       326 ~g~~  329 (368)
T 3mmy_A          326 NGNI  329 (368)
T ss_dssp             TSSC
T ss_pred             CCCe
Confidence            7753

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-32  Score=256.79  Aligned_cols=279  Identities=9%  Similarity=0.030  Sum_probs=220.2

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc---eeeeccC---------------------------------
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---WIGTFEG---------------------------------   59 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~---~~~~l~g---------------------------------   59 (350)
                      ..|+.+++|+|   +|++|+++ .++.|++||..+|+   .+..+..                                 
T Consensus         4 ~~p~~~v~~s~---dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (450)
T 2vdu_B            4 IHPLQNLLTSR---DGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN   79 (450)
T ss_dssp             ECCCCEEEECS---SSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred             cccEEEEEecC---CCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence            35889999886   99977665 57899999999998   6655543                                 


Q ss_pred             ---------------------ccCCeEEEEECCCCcEE-EEeeCCCeEEEeeCC--CCCeeeee---eccccEeEEEEcC
Q 018784           60 ---------------------HKGAVWSCCLDANALFS-ASGSADFTAKLWDAL--TGDEKHSF---EHKHIVRACAFSE  112 (350)
Q Consensus        60 ---------------------H~~~V~~v~~~~~~~~l-~s~s~Dg~v~vWd~~--~~~~~~~~---~h~~~V~~~~~~~  112 (350)
                                           |.+.|++++|+|++.+| ++++.||+|++||+.  ++.....+   .|...|.+++|+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp  159 (450)
T 2vdu_B           80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE  159 (450)
T ss_dssp             --------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT
T ss_pred             cCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC
Confidence                                 44479999999999986 999999999999998  77776665   5678899999999


Q ss_pred             CCCeEEEeeCCCeEEEEECCCCCCCC---eeecCCCCcEEEEEEeCC--CCcEEEEEeCCCeEEEEECCCCceeEeec--
Q 018784          113 DTHLLLTGGFEKILRIFDLNRPDAPP---REVGNSSGSIRTVAWLHS--DQTILSSCTDSGGVRLWDARSGKIVQTLE--  185 (350)
Q Consensus       113 ~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~~~~~~v~~~~~~~~--~~~~~~s~~~dg~i~iwd~~~~~~~~~~~--  185 (350)
                      ++++|++|+.|+.+++|++.......   .....|...|.+++|++.  .+.++++|+.|++|++||+++++.+..+.  
T Consensus       160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  239 (450)
T 2vdu_B          160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG  239 (450)
T ss_dssp             TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred             CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence            99999999999999999997655322   244567889999999975  26788899999999999999998877633  


Q ss_pred             CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecC--------------------------CCCceeEecCC
Q 018784          186 TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMP--------------------------CNTESASLEPK  238 (350)
Q Consensus       186 ~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~--------------------------~~~~~~~~~~~  238 (350)
                      +...+.+++|+ ++++|+++ .|+.|++||+++++++..+...                          .....+.+.+ 
T Consensus       240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-  317 (450)
T 2vdu_B          240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-  317 (450)
T ss_dssp             CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-
T ss_pred             CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-
Confidence            55789999999 99887654 6889999999998877766532                          1122334444 


Q ss_pred             CCcEEEEec-CCCeEEEEEc--ccC---eeEEeecCCCcCEEEEEEcCCCCEEEEecC------CCcEEEecCCC
Q 018784          239 LGNIFIAGG-EDMWVHVFDF--HTG---EQIGCNKGHHGPVHCVRFSPGGESYASGSE------DGTIRIWQTNP  301 (350)
Q Consensus       239 ~~~~l~sg~-~d~~i~v~d~--~~~---~~~~~~~~h~~~v~~l~~sp~~~~lasgs~------Dg~v~vw~~~~  301 (350)
                      +++++++++ .|+.|++|++  .++   ..+..+.+| ..|.+++|+|++.+++.++.      +..|.+|.+..
T Consensus       318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence            577888777 8999999999  555   666777788 88999999996544444443      55689997653

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=6.1e-33  Score=244.65  Aligned_cols=220  Identities=19%  Similarity=0.216  Sum_probs=174.6

Q ss_pred             eeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCC--Ceeeee-eccccEeEEEEcC--CCCeEEEeeCCCeEEEE
Q 018784           55 GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG--DEKHSF-EHKHIVRACAFSE--DTHLLLTGGFEKILRIF  129 (350)
Q Consensus        55 ~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~--~~~~~~-~h~~~V~~~~~~~--~~~~l~sg~~d~~v~vw  129 (350)
                      ..+.+|.+.|++++|++++.+||||+.|++|+|||+...  +....+ .|...|.+++|+|  ++++|++|+.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            467899999999999999999999999999999998643  344454 5999999999986  48999999999999999


Q ss_pred             ECCCCCC-CCeeecCCCCcEEEEEEeCCC-CcEEEEEeCCCeEEEEECCCCce--eEee-cCCCCeEEEEEecCCcEEEE
Q 018784          130 DLNRPDA-PPREVGNSSGSIRTVAWLHSD-QTILSSCTDSGGVRLWDARSGKI--VQTL-ETKSPVTSAEVSRDGRYITT  204 (350)
Q Consensus       130 d~~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~dg~i~iwd~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~  204 (350)
                      |+.++.. .......|...|.+++|.+.. +.++++++.|++|++||++++..  ...+ .+...+.+++|+|++..-. 
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~-  161 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED-  161 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc-
Confidence            9986542 233455688899999998753 67889999999999999987632  2233 3456789999998752110 


Q ss_pred             EcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCe----eEEeecCCCcCEEEEEEcC
Q 018784          205 ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE----QIGCNKGHHGPVHCVRFSP  280 (350)
Q Consensus       205 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~----~~~~~~~h~~~v~~l~~sp  280 (350)
                        + .                        ...+..+++|++|+.|+.|++||++++.    ....+.+|..+|.+++|+|
T Consensus       162 --~-~------------------------~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp  214 (297)
T 2pm7_B          162 --G-E------------------------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP  214 (297)
T ss_dssp             -----------------------------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC
T ss_pred             --c-c------------------------CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECC
Confidence              0 0                        0001236789999999999999998765    5667889999999999999


Q ss_pred             CC---CEEEEecCCCcEEEecCCCC
Q 018784          281 GG---ESYASGSEDGTIRIWQTNPP  302 (350)
Q Consensus       281 ~~---~~lasgs~Dg~v~vw~~~~~  302 (350)
                      ++   .+|||||.|++|+|||+...
T Consensus       215 ~~~~~~~las~s~D~~v~iWd~~~~  239 (297)
T 2pm7_B          215 TVLLRSYMASVSQDRTCIIWTQDNE  239 (297)
T ss_dssp             CCSSSEEEEEEETTSCEEEEEESST
T ss_pred             CCCCceEEEEEECCCcEEEEEeCCC
Confidence            84   88999999999999998653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-34  Score=270.21  Aligned_cols=227  Identities=11%  Similarity=0.030  Sum_probs=174.3

Q ss_pred             CCcEEEEeeCCCeEEEeeCCCCCee----eee-eccccEeEEEEcCC------CCeEEEeeCCCeEEEEECCCCCCC---
Q 018784           72 NALFSASGSADFTAKLWDALTGDEK----HSF-EHKHIVRACAFSED------THLLLTGGFEKILRIFDLNRPDAP---  137 (350)
Q Consensus        72 ~~~~l~s~s~Dg~v~vWd~~~~~~~----~~~-~h~~~V~~~~~~~~------~~~l~sg~~d~~v~vwd~~~~~~~---  137 (350)
                      ++.+++|++.|++|+|||+.+++..    ..+ .|.+.|.+++|+|+      +.+||+++.|++|++||+......   
T Consensus       172 ~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~  251 (524)
T 2j04_B          172 HLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHV  251 (524)
T ss_dssp             ----------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSE
T ss_pred             hhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccc
Confidence            3445566789999999999777642    223 35788999999997      579999999999999999765321   


Q ss_pred             -------CeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCc-eeEeec-CCCCeEEE--EEecCC-cEEE-E
Q 018784          138 -------PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK-IVQTLE-TKSPVTSA--EVSRDG-RYIT-T  204 (350)
Q Consensus       138 -------~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~-~~~~~~-~~~~v~~~--~~~~~~-~~l~-~  204 (350)
                             ......|...|.+++|+++  ..+++|+.||+|++||+++++ +...+. +..+|.++  .++|++ .+|+ +
T Consensus       252 ~~~~~~p~~~l~~h~~~v~sv~~s~~--~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~  329 (524)
T 2j04_B          252 FKMCEKPSLTLSLADSLITTFDFLSP--TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTV  329 (524)
T ss_dssp             EECCCSCSEEECCTTTCEEEEEESSS--SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEE
T ss_pred             ceeecCceEEEEcCCCCEEEEEecCC--CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEe
Confidence                   2244567889999999864  368899999999999999764 344444 45789998  467877 6655 5


Q ss_pred             EcCCcEEEEECCCcceeeeeecCC---CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCC
Q 018784          205 ADGSSVKFWDANHFGLVKGYNMPC---NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPG  281 (350)
Q Consensus       205 ~~~~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~  281 (350)
                      +.|++|++||+++..++..+..+.   ....+.+.| +++.+++++.|++|++||++++.++.++.+|.+.|++|+|+|+
T Consensus       330 S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~  408 (524)
T 2j04_B          330 AVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRL  408 (524)
T ss_dssp             ETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSS
T ss_pred             ccCCeEEEEECCCCCcccccccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCC
Confidence            579999999999877655543322   234567776 4778999999999999999999888888899999999999999


Q ss_pred             CCEEEEecCCCcEEEecCCC
Q 018784          282 GESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       282 ~~~lasgs~Dg~v~vw~~~~  301 (350)
                      +++|+|||.|++|++||...
T Consensus       409 g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          409 HPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             CCBCEEEETTTEEECCBSCS
T ss_pred             CCeEEEEECCCEEEEEechH
Confidence            99999999999999999754

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.5e-33  Score=254.11  Aligned_cols=272  Identities=15%  Similarity=0.251  Sum_probs=212.5

Q ss_pred             eccCccCCeEEEEECCC----CcEEEEeeCCCeEEEeeCCCCCeeeeee------ccccEeEEEEcCC----CCeEEEee
Q 018784           56 TFEGHKGAVWSCCLDAN----ALFSASGSADFTAKLWDALTGDEKHSFE------HKHIVRACAFSED----THLLLTGG  121 (350)
Q Consensus        56 ~l~gH~~~V~~v~~~~~----~~~l~s~s~Dg~v~vWd~~~~~~~~~~~------h~~~V~~~~~~~~----~~~l~sg~  121 (350)
                      ..++|.+.|.+++|+|+    ...+++++.++.|++||+.++.....+.      |...|.+++|+|+    +.+|++|+
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            45689999999999984    4456666677799999998777655443      5678999999998    67999999


Q ss_pred             CCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEee----cCCCCeEEEEEec
Q 018784          122 FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL----ETKSPVTSAEVSR  197 (350)
Q Consensus       122 ~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~  197 (350)
                      .|+.|++||+.+.+. ......|...|.+++|++.++.++++++.|++|++||+++++.+..+    .+...+.+++|+|
T Consensus        93 ~dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  171 (366)
T 3k26_A           93 SRGIIRIINPITMQC-IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL  171 (366)
T ss_dssp             TTCEEEEECTTTCCE-EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred             CCCEEEEEEchhceE-eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence            999999999986544 33455688999999999867888999999999999999999988887    3567899999999


Q ss_pred             CCcEEEEE-cCCcEEEEECCCcceeeeee-----------------------------cCCCCceeEecCCCCcEEEEec
Q 018784          198 DGRYITTA-DGSSVKFWDANHFGLVKGYN-----------------------------MPCNTESASLEPKLGNIFIAGG  247 (350)
Q Consensus       198 ~~~~l~~~-~~~~i~vwd~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~l~sg~  247 (350)
                      ++++++++ .++.|++||+++......+.                             .......+.+.   ++++++++
T Consensus       172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~  248 (366)
T 3k26_A          172 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKS  248 (366)
T ss_dssp             TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEEC
T ss_pred             CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc---CCEEEEEe
Confidence            99877655 68999999998865443222                             11122333443   67999999


Q ss_pred             CCCeEEEEEcccCee--------------EEeecCCCcCEEEEEEcCC--CCEEEEecCCCcEEEecCCCCCcccCCCCC
Q 018784          248 EDMWVHVFDFHTGEQ--------------IGCNKGHHGPVHCVRFSPG--GESYASGSEDGTIRIWQTNPPNHEENHSGT  311 (350)
Q Consensus       248 ~d~~i~v~d~~~~~~--------------~~~~~~h~~~v~~l~~sp~--~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~  311 (350)
                      .|+.|++||+.++..              +..+.+|...|++++|+|+  +++|++|+.||.|++||+.........   
T Consensus       249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---  325 (366)
T 3k26_A          249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK---  325 (366)
T ss_dssp             SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCE---
T ss_pred             cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcccc---
Confidence            999999999987643              6778899999999999999  999999999999999998765432110   


Q ss_pred             CCccccccccccccceeeeeeEEEcccch
Q 018784          312 GNAQTGKLKASTDEVTRKIEGFHINKEGK  340 (350)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~i~~~~~~~~g~  340 (350)
                            ........+...|.++.++|+|+
T Consensus       326 ------~~~~~~~~~~~~v~~~~~s~~~~  348 (366)
T 3k26_A          326 ------CTTLTHHKCGAAIRQTSFSRDSS  348 (366)
T ss_dssp             ------EEEECCTTCCSCEEEEEECTTSS
T ss_pred             ------ceEEcccccCCceEEEEeCCCCC
Confidence                  00111112256788888888875

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-33  Score=258.09  Aligned_cols=256  Identities=16%  Similarity=0.189  Sum_probs=203.5

Q ss_pred             eeEeeCCCCceeeeccCccCCeEEEEECCCCc-EEEEeeCCCeEEEeeC----CCCC------eeeeee-----------
Q 018784           43 PMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWDA----LTGD------EKHSFE-----------  100 (350)
Q Consensus        43 v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~-~l~s~s~Dg~v~vWd~----~~~~------~~~~~~-----------  100 (350)
                      +.+|+............|.+.|.+++|+|++. ++++|+.||.|++||+    .+++      ....+.           
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (425)
T 1r5m_A           27 DSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGK  106 (425)
T ss_dssp             -------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC-----
T ss_pred             cccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccC
Confidence            45677655554444455679999999999999 9999999999999999    8777      344443           


Q ss_pred             ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCce
Q 018784          101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI  180 (350)
Q Consensus       101 h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~  180 (350)
                      |...|.+++|+|++++|++++.|+.|++||..  .........|...+.+++|.+ ++.++++++.|+.|++||+++++.
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~  183 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNKT--GALLNVLNFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTV  183 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEETT--SCEEEEECCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCeeeeccCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcE
Confidence            46689999999999999999999999999943  233345567888999999986 556777888999999999999998


Q ss_pred             eEeecCCCC----------------eEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCC-ceeEecCCCCcEE
Q 018784          181 VQTLETKSP----------------VTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIF  243 (350)
Q Consensus       181 ~~~~~~~~~----------------v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l  243 (350)
                      +..+..+..                +..+.|++++.+++++.++.|++||+++...+..+..+... ..+.+.+ ++++|
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l  262 (425)
T 1r5m_A          184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TNKLL  262 (425)
T ss_dssp             EEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TTTEE
T ss_pred             EEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CCCEE
Confidence            888775432                88899999999888888999999999988777666544333 3455555 57899


Q ss_pred             EEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCC
Q 018784          244 IAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPN  303 (350)
Q Consensus       244 ~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~  303 (350)
                      ++++.|+.|++||+.+++.+..+.+|...|.+++|+|++ ++++++.|+.|++||+....
T Consensus       263 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~  321 (425)
T 1r5m_A          263 LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNT  321 (425)
T ss_dssp             EEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTE
T ss_pred             EEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCc
Confidence            999999999999999999988999999999999999999 99999999999999986544

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.9e-33  Score=254.10  Aligned_cols=246  Identities=21%  Similarity=0.290  Sum_probs=205.3

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC-
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT-   92 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~-   92 (350)
                      .|..+|.+++|+|   +|.+|++|+.|+.++|||..+++.+..+.+|...|.+++|  ++.++++++.||.|++||+.. 
T Consensus       132 ~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~  206 (401)
T 4aez_A          132 DESTYVASVKWSH---DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIA  206 (401)
T ss_dssp             CTTCCEEEEEECT---TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS
T ss_pred             CCCCCEEEEEECC---CCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccC
Confidence            4899999999987   9999999999999999999999999999999999999999  567999999999999999984 


Q ss_pred             CCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe--CCCe
Q 018784           93 GDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT--DSGG  169 (350)
Q Consensus        93 ~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~--~dg~  169 (350)
                      ......+ .|...|.+++|+|++.+|++|+.|+.|++||+.+... ......|...+.+++|++.+..++++++  .|+.
T Consensus       207 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~  285 (401)
T 4aez_A          207 NHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP-KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ  285 (401)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE-EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCE
T ss_pred             cceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc-cEEecCCcceEEEEEECCCCCCEEEEecCCCCCE
Confidence            3444444 5899999999999999999999999999999986443 3344567889999999988888888876  7999


Q ss_pred             EEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE---cCCcEEEEECCCcceeeeee--cCC-CCceeEecCCCCcEE
Q 018784          170 VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA---DGSSVKFWDANHFGLVKGYN--MPC-NTESASLEPKLGNIF  243 (350)
Q Consensus       170 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~~~i~vwd~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~l  243 (350)
                      |++||+++++.+..+.....+.+++|+|++++++++   .++.|++||+.+........  .+. ....+.+.+ ++.+|
T Consensus       286 i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l  364 (401)
T 4aez_A          286 IHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRIL  364 (401)
T ss_dssp             EEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEE
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEE
Confidence            999999999999999988999999999999988763   48999999998865554433  222 234455665 68999


Q ss_pred             EEecCCCeEEEEEcccCeeEEee
Q 018784          244 IAGGEDMWVHVFDFHTGEQIGCN  266 (350)
Q Consensus       244 ~sg~~d~~i~v~d~~~~~~~~~~  266 (350)
                      ++++.|+.|++||+.+++.+...
T Consensus       365 ~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          365 STAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             EEECTTSEEEEEECCC-------
T ss_pred             EEEeCCCcEEEEECCCCcccccc
Confidence            99999999999999998876544

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-32  Score=247.29  Aligned_cols=247  Identities=15%  Similarity=0.246  Sum_probs=203.3

Q ss_pred             eeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEECC
Q 018784           54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLN  132 (350)
Q Consensus        54 ~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~  132 (350)
                      ...|.+|.+.|.+++|++++.++++++.||.|++||+.+++....+. |...|.+++|+|++++|++++.|+.|++||+.
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~  104 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS  104 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            34689999999999999999999999999999999999998887774 89999999999999999999999999999998


Q ss_pred             CCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC-----CeEEEEECCCCcee-----------EeecC-C--CCeEEE
Q 018784          133 RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-----GGVRLWDARSGKIV-----------QTLET-K--SPVTSA  193 (350)
Q Consensus       133 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-----g~i~iwd~~~~~~~-----------~~~~~-~--~~v~~~  193 (350)
                      ++......  .+...+.+++|.+. +..+++++.+     +.|++||++.+...           ..+.. .  ..+..+
T Consensus       105 ~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (369)
T 3zwl_B          105 NGQCVATW--KSPVPVKRVEFSPC-GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA  181 (369)
T ss_dssp             TCCEEEEE--ECSSCEEEEEECTT-SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred             CCcEEEEe--ecCCCeEEEEEccC-CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence            66543322  27788999999864 5566777777     99999999765421           12221 2  279999


Q ss_pred             EEecCCcEEEEE-cCCcEEEEECCC-cceeeeeecCCCC-ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCC
Q 018784          194 EVSRDGRYITTA-DGSSVKFWDANH-FGLVKGYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHH  270 (350)
Q Consensus       194 ~~~~~~~~l~~~-~~~~i~vwd~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~  270 (350)
                      +|+|++++++++ .++.|++||+++ ...+..+..+... ..+.+.+ ++++|++++.|+.|++||+.+++.+..+. +.
T Consensus       182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~  259 (369)
T 3zwl_B          182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVSTLQVLKKYE-TD  259 (369)
T ss_dssp             EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEE-CS
T ss_pred             EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECC-CCCEEEEecCCceEEEEECCCCceeeeec-CC
Confidence            999999887655 678999999998 6666666654443 3455555 68999999999999999999998887777 77


Q ss_pred             cCEEEEEEcCCCCEEEEecCCC--------------cEEEecCCCCCcc
Q 018784          271 GPVHCVRFSPGGESYASGSEDG--------------TIRIWQTNPPNHE  305 (350)
Q Consensus       271 ~~v~~l~~sp~~~~lasgs~Dg--------------~v~vw~~~~~~~~  305 (350)
                      ..+.+++|+|+++++++++.++              .+++||.......
T Consensus       260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  308 (369)
T 3zwl_B          260 CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI  308 (369)
T ss_dssp             SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEE
T ss_pred             CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch
Confidence            8899999999999999999998              7999988665544

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.2e-34  Score=256.03  Aligned_cols=261  Identities=10%  Similarity=0.042  Sum_probs=204.9

Q ss_pred             cCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC---------CCCeee
Q 018784           27 ITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL---------TGDEKH   97 (350)
Q Consensus        27 ~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~---------~~~~~~   97 (350)
                      ..+++.+|++|+.|++|++||..+++.+..+.  ...|.++.++|+   +++++.|++|++|+..         ++....
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~  118 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLR  118 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence            34578999999999999999999999888877  567777888887   8999999999999764         333233


Q ss_pred             e--eeccccEeEEEEcC--CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEE
Q 018784           98 S--FEHKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW  173 (350)
Q Consensus        98 ~--~~h~~~V~~~~~~~--~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iw  173 (350)
                      .  ..|...|.+++|+|  ++++|++++.|++|++||+.++.........+...+.+++|++ ++.++++|+.|++|++|
T Consensus       119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iw  197 (343)
T 3lrv_A          119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVY  197 (343)
T ss_dssp             EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEE
T ss_pred             EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEE
Confidence            3  24667899999999  9999999999999999999876553223345566789999875 67788999999999999


Q ss_pred             ECCCCcee-EeecC--CCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeec------CCCCceeEecCCCCcEEE
Q 018784          174 DARSGKIV-QTLET--KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM------PCNTESASLEPKLGNIFI  244 (350)
Q Consensus       174 d~~~~~~~-~~~~~--~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~  244 (350)
                      |+++++.+ ..+..  ..+|.+++|+|++.+|+++.++.|++||+++...+..+..      +.....+.+.+ ++++|+
T Consensus       198 d~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~  276 (343)
T 3lrv_A          198 NLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD-SGKNMI  276 (343)
T ss_dssp             ESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT-TSSEEE
T ss_pred             ECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECC-CCCEEE
Confidence            99999877 66654  6789999999999999887777999999998776544321      11112356665 588999


Q ss_pred             EecC-CCeEEEEEcccCeeEEeecCCCcCEEEEEEcC---CCCEEEEecCCCcEEEec
Q 018784          245 AGGE-DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSP---GGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       245 sg~~-d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp---~~~~lasgs~Dg~v~vw~  298 (350)
                      +++. |+.|++|++.........    .++..++|+|   +...+++++.|+.++++-
T Consensus       277 ~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  330 (343)
T 3lrv_A          277 AYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAIL  330 (343)
T ss_dssp             EEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred             EecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEE
Confidence            9888 999999999765432222    5678889998   888999999999999884

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=5e-32  Score=247.30  Aligned_cols=270  Identities=12%  Similarity=0.099  Sum_probs=223.5

Q ss_pred             ccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEE-EEeeCCCeEEEeeCCCCCeeeeeeccccEeEEE
Q 018784           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFEHKHIVRACA  109 (350)
Q Consensus        31 g~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l-~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~  109 (350)
                      ..++++++.|++|++||..+++++..+.+|.. +.+++|++++.++ ++++.|++|++||+.+++....+.+...+.+++
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~   80 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVA   80 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceE
Confidence            35789999999999999999999999988854 8999999999865 788899999999999998888887777999999


Q ss_pred             EcCCCCeEE-EeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCC
Q 018784          110 FSEDTHLLL-TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS  188 (350)
Q Consensus       110 ~~~~~~~l~-sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~  188 (350)
                      |+|++++|+ +++.++.|++||+.+++... .. .+...+..++|++.+..++++++.|+.|++||+++++.+..+..+.
T Consensus        81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~-~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~  158 (391)
T 1l0q_A           81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAG-TV-KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR  158 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEE-EE-ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS
T ss_pred             ECCCCCEEEEEECCCCEEEEEECCCCeEEE-EE-eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC
Confidence            999999875 45567999999998654322 22 2345688999988777777899999999999999999998888888


Q ss_pred             CeEEEEEecCCcEE-EEE-cCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEec---CCCeEEEEEcccCeeE
Q 018784          189 PVTSAEVSRDGRYI-TTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG---EDMWVHVFDFHTGEQI  263 (350)
Q Consensus       189 ~v~~~~~~~~~~~l-~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~---~d~~i~v~d~~~~~~~  263 (350)
                      .+..++|+|+++++ +++ .++.|++||+++...+..+........+.+.+ +++++++++   .++.|++||+.+++.+
T Consensus       159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~~~  237 (391)
T 1l0q_A          159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKIT  237 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred             CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECC-CCCEEEEEecCcCCCcEEEEECCCCeEE
Confidence            88999999999876 444 46899999999988777766555455566666 466666666   6899999999999988


Q ss_pred             EeecCCCcCEEEEEEcCCCCEE-EEecCCCcEEEecCCCCCcc
Q 018784          264 GCNKGHHGPVHCVRFSPGGESY-ASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       264 ~~~~~h~~~v~~l~~sp~~~~l-asgs~Dg~v~vw~~~~~~~~  305 (350)
                      ..+..|. .+.+++|+|++++| ++++.|+.|++||+...+..
T Consensus       238 ~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~  279 (391)
T 1l0q_A          238 ARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTIT  279 (391)
T ss_dssp             EEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEE
Confidence            8887765 47999999999877 68899999999998765443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=3e-32  Score=246.35  Aligned_cols=274  Identities=11%  Similarity=0.147  Sum_probs=203.7

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEE-EEeeCCCeEEEeeC
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDA   90 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l-~s~s~Dg~v~vWd~   90 (350)
                      +.+|..+|.+++|+|   ||.+||+|+.|+ ++||+.++++.......  ..+..+++.+++..+ ++++.|++|++||.
T Consensus        15 ~~~h~~~V~~v~fs~---dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~   88 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQ---DQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDD   88 (355)
T ss_dssp             ----CCCCCEEEECT---TSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred             cccCCCceEEEEECC---CCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence            378999999999997   999999998775 78999988776654432  357778888877766 67888999999999


Q ss_pred             CCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCC-CCCCeeecCCCCcEEEEEEeCCCCcEEEE-EeCCC
Q 018784           91 LTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP-DAPPREVGNSSGSIRTVAWLHSDQTILSS-CTDSG  168 (350)
Q Consensus        91 ~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~s-~~~dg  168 (350)
                      .+++.+..+.+...|.+++|+++.  ++++ .|+.|++||+.+. ...... ..   ....+++.+  ..++++ |+.||
T Consensus        89 ~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~-~~---~~~~~~~s~--~~la~~sg~~~g  159 (355)
T 3vu4_A           89 VKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDD-IR---FGGVCEFSN--GLLVYSNEFNLG  159 (355)
T ss_dssp             TTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCC-EE---EEEEEEEET--TEEEEEESSCTT
T ss_pred             CCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEe-cc---CCceEEEEc--cEEEEeCCCcCc
Confidence            999998888899999999999875  3333 4789999999865 332222 21   233344444  444444 78999


Q ss_pred             eEEEEECCCCc----------------eeEeec-CCCCeEEEEEecCCcEEEEE-cCCc-EEEEECCCcceeeeeec--C
Q 018784          169 GVRLWDARSGK----------------IVQTLE-TKSPVTSAEVSRDGRYITTA-DGSS-VKFWDANHFGLVKGYNM--P  227 (350)
Q Consensus       169 ~i~iwd~~~~~----------------~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~-i~vwd~~~~~~~~~~~~--~  227 (350)
                      +|++||+++++                .+..+. +..+|.+++|+|++++|+++ .|++ |++||++++.++..+..  +
T Consensus       160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h  239 (355)
T 3vu4_A          160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLD  239 (355)
T ss_dssp             CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTC
T ss_pred             EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC
Confidence            99999999865                144554 45789999999999988765 5888 99999999998888772  3


Q ss_pred             -CCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeE--Eeec---------------------CCCcCEEEEEEcCCCC
Q 018784          228 -CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI--GCNK---------------------GHHGPVHCVRFSPGGE  283 (350)
Q Consensus       228 -~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~--~~~~---------------------~h~~~v~~l~~sp~~~  283 (350)
                       .....+.+.| ++++|++++.|++|++||+..+...  ..+.                     .+......++|+|+++
T Consensus       240 ~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~  318 (355)
T 3vu4_A          240 RADVVDMKWST-DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESS  318 (355)
T ss_dssp             CSCEEEEEECT-TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSE
T ss_pred             CCcEEEEEECC-CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCC
Confidence             3344556665 6899999999999999999765321  1111                     1122346799999999


Q ss_pred             EEEEecCCCcEEEecCCC
Q 018784          284 SYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       284 ~lasgs~Dg~v~vw~~~~  301 (350)
                      ++++++.||.+++|++..
T Consensus       319 ~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          319 LVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             EEEEETTTTEEEEEEEEE
T ss_pred             EEEEEeCCCeEEEEEEEc
Confidence            999999999999998754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.7e-32  Score=248.13  Aligned_cols=249  Identities=16%  Similarity=0.140  Sum_probs=202.0

Q ss_pred             eEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceee--eccCccCCeEEEEECCCCcEEEEeeCCCeEEE
Q 018784           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG--TFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (350)
Q Consensus        10 ~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~--~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~v   87 (350)
                      ..+.+|..+|.+++|+|   ++++|++++.|+++++||..++++..  .+.+|...|.+++|++++.++++++.|+.|++
T Consensus        46 ~~~~~h~~~v~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i  122 (372)
T 1k8k_C           46 HELKEHNGQVTGVDWAP---DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI  122 (372)
T ss_dssp             EEEECCSSCEEEEEEET---TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEE
T ss_pred             eeecCCCCcccEEEEeC---CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEE
Confidence            34579999999999997   89999999999999999998887544  45789999999999999999999999999999


Q ss_pred             eeCCCCCe---eee--eeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCC-----------------CCCCeeecCCC
Q 018784           88 WDALTGDE---KHS--FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP-----------------DAPPREVGNSS  145 (350)
Q Consensus        88 Wd~~~~~~---~~~--~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~-----------------~~~~~~~~~~~  145 (350)
                      ||+..+..   ...  ..|...|.+++|+|++++|++++.|+.|++||+...                 .........|.
T Consensus       123 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (372)
T 1k8k_C          123 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC  202 (372)
T ss_dssp             EEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS
T ss_pred             EEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCC
Confidence            99987763   222  247889999999999999999999999999997421                 12223344678


Q ss_pred             CcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEEcCCcEEEEECCC--cc--e
Q 018784          146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANH--FG--L  220 (350)
Q Consensus       146 ~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~--~~--~  220 (350)
                      ..+.+++|++ ++.++++++.|+.|++||+++++++..+..+ .++.+++|+|++++++++.++.|++||++.  ..  .
T Consensus       203 ~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~  281 (372)
T 1k8k_C          203 GWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSF  281 (372)
T ss_dssp             SCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEE
T ss_pred             CeEEEEEECC-CCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEE
Confidence            8899999986 4567888899999999999999988888754 589999999999999999999999999977  31  1


Q ss_pred             e------------------------------------eee-ecCCC-CceeEecCCCC---cEEEEecCCCeEEEEEccc
Q 018784          221 V------------------------------------KGY-NMPCN-TESASLEPKLG---NIFIAGGEDMWVHVFDFHT  259 (350)
Q Consensus       221 ~------------------------------------~~~-~~~~~-~~~~~~~~~~~---~~l~sg~~d~~i~v~d~~~  259 (350)
                      +                                    ..+ ..+.. ...+.+.+.++   .+|++|+.|+.|++||+.+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          282 GGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             CCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             eeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence            1                                    001 11122 23444566666   9999999999999999987


Q ss_pred             Cee
Q 018784          260 GEQ  262 (350)
Q Consensus       260 ~~~  262 (350)
                      ++.
T Consensus       362 ~~~  364 (372)
T 1k8k_C          362 LES  364 (372)
T ss_dssp             HHH
T ss_pred             hhH
Confidence            654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.1e-32  Score=255.89  Aligned_cols=243  Identities=12%  Similarity=0.193  Sum_probs=190.8

Q ss_pred             CccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC-----------eeeee-ecc------------ccEeEEEEcCCC
Q 018784           59 GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-----------EKHSF-EHK------------HIVRACAFSEDT  114 (350)
Q Consensus        59 gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~-----------~~~~~-~h~------------~~V~~~~~~~~~  114 (350)
                      .|.+.|.+++|++++.+||+|+.||.|+|||+.++.           ....+ .|.            ..|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            378999999999999999999999999999998765           23333 476            779999999998


Q ss_pred             --CeEEEeeCCCeEEEEECCCCCCC---------------------------------------CeeecCCCCcEEEEEE
Q 018784          115 --HLLLTGGFEKILRIFDLNRPDAP---------------------------------------PREVGNSSGSIRTVAW  153 (350)
Q Consensus       115 --~~l~sg~~d~~v~vwd~~~~~~~---------------------------------------~~~~~~~~~~v~~~~~  153 (350)
                        .+|++++.|++|++||+......                                       ......|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              79999999999999998642110                                       0112468889999999


Q ss_pred             eCCCCcEEEEEeCCCeEEEEECCC-CceeEee--------cCCCCeEEEEEecCC-cEEEE-EcCCcEEEEECCCcce--
Q 018784          154 LHSDQTILSSCTDSGGVRLWDARS-GKIVQTL--------ETKSPVTSAEVSRDG-RYITT-ADGSSVKFWDANHFGL--  220 (350)
Q Consensus       154 ~~~~~~~~~s~~~dg~i~iwd~~~-~~~~~~~--------~~~~~v~~~~~~~~~-~~l~~-~~~~~i~vwd~~~~~~--  220 (350)
                      ++ ++.++++| .|++|++||+++ ++.+..+        .+...+.+++|+|++ +++++ +.++.|++||+++...  
T Consensus       186 ~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          186 NS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             CT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             cC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            87 55677777 799999999994 4444432        345689999999998 66655 5689999999998775  


Q ss_pred             --eeeeecCC-------------CCceeEecCCCCcEEEEecCCCeEEEEEccc-CeeEEeecCCCcC------------
Q 018784          221 --VKGYNMPC-------------NTESASLEPKLGNIFIAGGEDMWVHVFDFHT-GEQIGCNKGHHGP------------  272 (350)
Q Consensus       221 --~~~~~~~~-------------~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~-~~~~~~~~~h~~~------------  272 (350)
                        +..+..+.             ....+.+.+ ++++|++++. +.|++||+.+ ++.+..+.+|...            
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  341 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC  341 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence              45555443             334556665 6889999998 9999999997 8888888888642            


Q ss_pred             ---EEEEEEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784          273 ---VHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       273 ---v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~  305 (350)
                         +..++|+|++++|++|+.||.|++||+...+..
T Consensus       342 i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          342 IFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             GGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred             cccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence               335999999999999999999999999876543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.6e-33  Score=255.90  Aligned_cols=241  Identities=12%  Similarity=0.148  Sum_probs=186.8

Q ss_pred             ccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCC--Ceeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCC
Q 018784           57 FEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG--DEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR  133 (350)
Q Consensus        57 l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~--~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~  133 (350)
                      +..|.++|++++|+|++.++++++.|+.|++||+.++  +....+ .|...|.+++|+|++++|++++.|++|++||+..
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence            3446789999999999999999999999999999877  444444 5899999999999999999999999999999987


Q ss_pred             CC--CCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCc---eeEeec--CCCCeEEEEEecCCcEEEE-E
Q 018784          134 PD--APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK---IVQTLE--TKSPVTSAEVSRDGRYITT-A  205 (350)
Q Consensus       134 ~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~---~~~~~~--~~~~v~~~~~~~~~~~l~~-~  205 (350)
                      ..  ........|...+.+++|++ ++.++++++.|++|++||+++++   ....+.  +...+.+++|+|+++++++ +
T Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~  165 (377)
T 3dwl_C           87 DGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC  165 (377)
T ss_dssp             --CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE
T ss_pred             CCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe
Confidence            55  12334456888999999986 55677788999999999999886   355555  4678999999999987765 4


Q ss_pred             cCCcEEEEECCC------------------cceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCee----E
Q 018784          206 DGSSVKFWDANH------------------FGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ----I  263 (350)
Q Consensus       206 ~~~~i~vwd~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~----~  263 (350)
                      .|+.|++||++.                  ..++..+........+.+.+ ++++|++++.|+.|++||+.+++.    +
T Consensus       166 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  244 (377)
T 3dwl_C          166 ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSP-SGNALAYAGHDSSVTIAYPSAPEQPPRAL  244 (377)
T ss_dssp             SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECT-TSSCEEEEETTTEEC-CEECSTTSCEEEC
T ss_pred             CCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCCcceee
Confidence            689999999852                  33333331112234455555 588999999999999999999887    7


Q ss_pred             EeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          264 GCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       264 ~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      ..+.+|..+|.+++|+|++++|++|+.|+.+ +|+..
T Consensus       245 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          245 ITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             CCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             EeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            7888999999999999999999999877766 66554

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=3.9e-31  Score=244.68  Aligned_cols=277  Identities=12%  Similarity=0.110  Sum_probs=223.7

Q ss_pred             CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceee-----eccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG-----TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~-----~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      ..+.+++|+|   ++.++++++.|++|++||..+++...     .+.+|.+.|.+++|++++.++++++.|+.|++||+.
T Consensus       123 ~~~~~~~~s~---~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~  199 (433)
T 3bws_A          123 FQPKSVRFID---NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLK  199 (433)
T ss_dssp             SCBCCCEESS---SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETT
T ss_pred             CCceEEEEeC---CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECC
Confidence            3455888886   88899999999999999999999887     567899999999999999999999999999999999


Q ss_pred             CCCeeeeee-ccccEeEEEEcCCCCeEE-EeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe----
Q 018784           92 TGDEKHSFE-HKHIVRACAFSEDTHLLL-TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT----  165 (350)
Q Consensus        92 ~~~~~~~~~-h~~~V~~~~~~~~~~~l~-sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~----  165 (350)
                      +++....+. |...+.+++|+|+++.++ +++.|+.|++||+.++... .. ......+..++|++.+..+++++.    
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~-~~-~~~~~~~~~~~~~~~g~~l~~~~~~~~~  277 (433)
T 3bws_A          200 TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEI-RK-TDKIGLPRGLLLSKDGKELYIAQFSASN  277 (433)
T ss_dssp             TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EE-CCCCSEEEEEEECTTSSEEEEEEEESCT
T ss_pred             CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEE-EE-ecCCCCceEEEEcCCCCEEEEEECCCCc
Confidence            888777764 778899999999999885 5558999999999765432 22 223456889999876555554443    


Q ss_pred             ---CCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEE-EE-EcCCcEEEEECCCcceeeeeecCCCCceeEecCCCC
Q 018784          166 ---DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLG  240 (350)
Q Consensus       166 ---~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~-~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (350)
                         .|+.|++||+++++.+..+.....+..++|+|+++.+ ++ +.++.|++||+.+.+.+..+........+.+.+. +
T Consensus       278 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~d-g  356 (433)
T 3bws_A          278 QESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPD-G  356 (433)
T ss_dssp             TCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTT-S
T ss_pred             cccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCC-C
Confidence               5789999999999888877666688899999999654 44 4578999999998888777765555556666664 6


Q ss_pred             cEEEEecC---------------CCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEec-CCCcEEEecCC
Q 018784          241 NIFIAGGE---------------DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-EDGTIRIWQTN  300 (350)
Q Consensus       241 ~~l~sg~~---------------d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs-~Dg~v~vw~~~  300 (350)
                      +++++++.               ||.|++||+.+++.+..+.. ...+.+++|+|++++|++++ .|+.|++|+++
T Consensus       357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            66666554               57999999999998887776 45799999999999988776 49999999975

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1e-30  Score=231.42  Aligned_cols=246  Identities=15%  Similarity=0.250  Sum_probs=206.0

Q ss_pred             eEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (350)
Q Consensus        10 ~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd   89 (350)
                      +.+.+|...|.+++|+|   +|++||+|+.|++|+||+.++++++..+.+|...+.++..  ++.++++++.++.+++|+
T Consensus        61 ~~~~~~~~~V~~v~~~~---~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~  135 (318)
T 4ggc_A           61 LQMEQPGEYISSVAWIK---EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHD  135 (318)
T ss_dssp             EECCSTTCCEEEEEECT---TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEE
T ss_pred             EEecCCCCeEEEEEECC---CCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeee
Confidence            34568999999999987   9999999999999999999999999999999999876554  567999999999999999


Q ss_pred             CCCCCee-ee-eeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCC---CeeecCCCCcEEEEEEeCCCCcEE--E
Q 018784           90 ALTGDEK-HS-FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP---PREVGNSSGSIRTVAWLHSDQTIL--S  162 (350)
Q Consensus        90 ~~~~~~~-~~-~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~--~  162 (350)
                      ....... .. ..|...+..+.+++++++|++++.|++|++||+.+++..   ......+.+.+..+.+.+.+..++  +
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  215 (318)
T 4ggc_A          136 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG  215 (318)
T ss_dssp             TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEE
T ss_pred             cCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEE
Confidence            8766533 33 368899999999999999999999999999999765432   234456778899999988776655  4


Q ss_pred             EEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE---cCCcEEEEECCCcceeeeeecCCCCc-eeEecCC
Q 018784          163 SCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA---DGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPK  238 (350)
Q Consensus       163 s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~  238 (350)
                      +++.+++|++||.+.............+..+.+.+++..++++   .++.|++||+++++++..+..+.... .+.+.+ 
T Consensus       216 ~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp-  294 (318)
T 4ggc_A          216 GGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-  294 (318)
T ss_dssp             ECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-
T ss_pred             ecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-
Confidence            6678899999999999988888888899999999998876543   47899999999999988887655443 445555 


Q ss_pred             CCcEEEEecCCCeEEEEEcccCe
Q 018784          239 LGNIFIAGGEDMWVHVFDFHTGE  261 (350)
Q Consensus       239 ~~~~l~sg~~d~~i~v~d~~~~~  261 (350)
                      ++++|++|+.|++|++||+.+.+
T Consensus       295 dg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          295 DGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             TSSCEEEEETTTEEEEECCSCCC
T ss_pred             CCCEEEEEecCCeEEEEECCCCC
Confidence            68999999999999999987654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=1.6e-31  Score=234.38  Aligned_cols=262  Identities=10%  Similarity=0.067  Sum_probs=177.3

Q ss_pred             EEEEEeCCCCeeEeeCCCC---ceeeeccCccCCeEEEEECCCC--cEEEEeeCCCeEEEeeCCC-------CCeeeeee
Q 018784           33 FLVSASKDSSPMLRNGETG---DWIGTFEGHKGAVWSCCLDANA--LFSASGSADFTAKLWDALT-------GDEKHSFE  100 (350)
Q Consensus        33 ~lasgs~d~~v~iw~~~~~---~~~~~l~gH~~~V~~v~~~~~~--~~l~s~s~Dg~v~vWd~~~-------~~~~~~~~  100 (350)
                      -+++++. .+|++|+..++   +.++++.+|+.+|..+.+.|+-  .+.++-|.=..-.++-+..       +..+..-.
T Consensus        56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g  134 (356)
T 2w18_A           56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSG  134 (356)
T ss_dssp             EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEE
T ss_pred             EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCC
Confidence            5566665 78999999988   8899999999988888877742  2222222211111111100       00011112


Q ss_pred             ccccEeEEEEcCCCCeEEEee--CCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeC--CCCcEEEEEeCCCeEEEEECC
Q 018784          101 HKHIVRACAFSEDTHLLLTGG--FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLH--SDQTILSSCTDSGGVRLWDAR  176 (350)
Q Consensus       101 h~~~V~~~~~~~~~~~l~sg~--~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~s~~~dg~i~iwd~~  176 (350)
                      |...|..+   ++++++.+++  .|+.|++|++............|...+..++|++  .++.++++++.|++|+|||++
T Consensus       135 ~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~  211 (356)
T 2w18_A          135 NIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK  211 (356)
T ss_dssp             EEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT
T ss_pred             CeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC
Confidence            33333333   4565555533  5899999998542222223334555555555554  567899999999999999999


Q ss_pred             CCceeEeecCC----CCeEEEEEecCCcEEEE-------------EcCCcEEEEECCCcceeeeeec--C-CCC-ceeEe
Q 018784          177 SGKIVQTLETK----SPVTSAEVSRDGRYITT-------------ADGSSVKFWDANHFGLVKGYNM--P-CNT-ESASL  235 (350)
Q Consensus       177 ~~~~~~~~~~~----~~v~~~~~~~~~~~l~~-------------~~~~~i~vwd~~~~~~~~~~~~--~-~~~-~~~~~  235 (350)
                      +++++.++..+    ..+..++|+|+|+++++             +.|++|++||..+.+.+..+..  + .+. .....
T Consensus       212 TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg  291 (356)
T 2w18_A          212 TGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEG  291 (356)
T ss_dssp             TCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEE
T ss_pred             CCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcc
Confidence            99999999742    35677889999987643             3467899999998887654421  1 111 11111


Q ss_pred             cCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEE-EEEEcCCCCEEEEecCCCcEEEecC
Q 018784          236 EPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVH-CVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       236 ~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~-~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                      .. .+.++++|+.|++|+|||+.+++.+.++.+|...+. +++|+|+|++|+||+.|++|+|||+
T Consensus       292 ~~-sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          292 DV-KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EE-ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             cc-CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            11 256799999999999999999999999999988765 5899999999999999999999985

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=5.4e-30  Score=233.78  Aligned_cols=285  Identities=14%  Similarity=0.132  Sum_probs=225.7

Q ss_pred             eeccCCceeEEEecccCCCccEE-EEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEE-EEeeCCCeEEEee
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWD   89 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~l-asgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l-~s~s~Dg~v~vWd   89 (350)
                      +.+|. .+.+++|+|   +|++| ++++.|++|++||..+++.+..+..|. .+.+++|+|++.++ ++++.|+.|++||
T Consensus        28 ~~~~~-~~~~~~~s~---dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d  102 (391)
T 1l0q_A           28 IPVGS-NPMGAVISP---DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVID  102 (391)
T ss_dssp             EECSS-SEEEEEECT---TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eecCC-CcceEEECC---CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEE
Confidence            35554 478999886   88766 788899999999999999998888765 89999999999876 5666789999999


Q ss_pred             CCCCCeeeeeeccccEeEEEEcCCCCeE-EEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784           90 ALTGDEKHSFEHKHIVRACAFSEDTHLL-LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (350)
Q Consensus        90 ~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg  168 (350)
                      +.+++....+.+...+.+++|+|+++.| ++++.|+.|++||+.+++... ... ....+..++|.+.+..++++++.|+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~-~~~-~~~~~~~~~~~~dg~~l~~~~~~~~  180 (391)
T 1l0q_A          103 TTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN-TVS-VGRSPKGIAVTPDGTKVYVANFDSM  180 (391)
T ss_dssp             TTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEE-CCSSEEEEEECTTSSEEEEEETTTT
T ss_pred             CCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE-EEe-cCCCcceEEECCCCCEEEEEeCCCC
Confidence            9999888888777789999999999977 688889999999997654322 222 2345788999887777778888999


Q ss_pred             eEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE----cCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEE
Q 018784          169 GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA----DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFI  244 (350)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (350)
                      +|++||+++++.+..+.....+..++|+|++++++++    .++.|++||+++.+.+..+..+.....+.+.+....+++
T Consensus       181 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~  260 (391)
T 1l0q_A          181 SISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYV  260 (391)
T ss_dssp             EEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEE
T ss_pred             EEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEE
Confidence            9999999999998888888889999999999877654    468999999999888777766555556667765334557


Q ss_pred             EecCCCeEEEEEcccCeeEEeecCCCcCEE---EEE------------EcCCC----------CEEEEecCCCcEEEecC
Q 018784          245 AGGEDMWVHVFDFHTGEQIGCNKGHHGPVH---CVR------------FSPGG----------ESYASGSEDGTIRIWQT  299 (350)
Q Consensus       245 sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~---~l~------------~sp~~----------~~lasgs~Dg~v~vw~~  299 (350)
                      +++.|+.|++||+.+++.+..+..|..+..   .+.            |+.+.          ..+.+.+.|..+++|+.
T Consensus       261 s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~  340 (391)
T 1l0q_A          261 ALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDF  340 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEEC
T ss_pred             EcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEEC
Confidence            889999999999999998887776654321   122            22221          23667778999999998


Q ss_pred             CCCC
Q 018784          300 NPPN  303 (350)
Q Consensus       300 ~~~~  303 (350)
                      ..+.
T Consensus       341 ~~g~  344 (391)
T 1l0q_A          341 GDGS  344 (391)
T ss_dssp             SSSC
T ss_pred             CCCc
Confidence            6544

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.1e-32  Score=241.49  Aligned_cols=222  Identities=18%  Similarity=0.235  Sum_probs=168.7

Q ss_pred             eccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe--eeee-eccccEeEEEEcC--CCCeEEEeeCCCeEEEEE
Q 018784           56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE--KHSF-EHKHIVRACAFSE--DTHLLLTGGFEKILRIFD  130 (350)
Q Consensus        56 ~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~--~~~~-~h~~~V~~~~~~~--~~~~l~sg~~d~~v~vwd  130 (350)
                      .+.+|.+.|++++|++++.+||||+.|++|+|||+.++..  ...+ .|...|.+++|+|  ++++|++|+.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            5679999999999999999999999999999999987643  3334 5999999999976  489999999999999999


Q ss_pred             CCCCCCC-CeeecCCCCcEEEEEEeCCC-CcEEEEEeCCCeEEEEECCCCcee---Eeec-CCCCeEEEEEecCCcEEEE
Q 018784          131 LNRPDAP-PREVGNSSGSIRTVAWLHSD-QTILSSCTDSGGVRLWDARSGKIV---QTLE-TKSPVTSAEVSRDGRYITT  204 (350)
Q Consensus       131 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~dg~i~iwd~~~~~~~---~~~~-~~~~v~~~~~~~~~~~l~~  204 (350)
                      +.++... ......|...|.+++|+|.+ +.++++|+.|++|++||++.+...   ..+. +...+.++.|+|+...   
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~---  164 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP---  164 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC---
Confidence            9865422 23345688899999999763 678999999999999999876422   2222 3456888888887421   


Q ss_pred             EcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccC---eeEEeecCCCcCEEEEEEcCC
Q 018784          205 ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG---EQIGCNKGHHGPVHCVRFSPG  281 (350)
Q Consensus       205 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~---~~~~~~~~h~~~v~~l~~sp~  281 (350)
                         +.  +.+....                ..+..+++|++|+.|+.|++||+..+   ..+..+.+|..+|.+++|+|+
T Consensus       165 ---~~--~~~~~~~----------------~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~  223 (316)
T 3bg1_A          165 ---GS--LIDHPSG----------------QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPS  223 (316)
T ss_dssp             -----------CCS----------------CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCC
T ss_pred             ---cc--ccccccc----------------cCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCC
Confidence               00  0000000                01123578999999999999999755   466778899999999999998


Q ss_pred             C----CEEEEecCCCcEEEecCCC
Q 018784          282 G----ESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       282 ~----~~lasgs~Dg~v~vw~~~~  301 (350)
                      +    .+|++|+.|++|+||++..
T Consensus       224 ~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          224 IGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             SSCSCCEEEEEETTCEEEEEECSS
T ss_pred             CCCCCceEEEEcCCCeEEEEEccC
Confidence            6    7899999999999999865

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1e-30  Score=239.11  Aligned_cols=279  Identities=15%  Similarity=0.224  Sum_probs=195.0

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECC---CCcEEEEeeCCCeEEEeeC
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA---NALFSASGSADFTAKLWDA   90 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~---~~~~l~s~s~Dg~v~vWd~   90 (350)
                      +|..+|.+++|+|  .++.+|++++.|+.+++||..+++....+. |...+.++.+.+   ++.++++++.|+.|++||+
T Consensus        97 ~~~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  173 (408)
T 4a11_B           97 VHRYSVETVQWYP--HDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL  173 (408)
T ss_dssp             CCSSCEEEEEECT--TCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEES
T ss_pred             cCCCcEEEEEEcc--CCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeC
Confidence            6999999999986  356799999999999999999999887776 778899999987   4459999999999999999


Q ss_pred             CCCCeeeeee-ccccEeEEEEcCCCC-eEEEeeCCCeEEEEECCCCCCCCeee---------------cCCCCcEEEEEE
Q 018784           91 LTGDEKHSFE-HKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPREV---------------GNSSGSIRTVAW  153 (350)
Q Consensus        91 ~~~~~~~~~~-h~~~V~~~~~~~~~~-~l~sg~~d~~v~vwd~~~~~~~~~~~---------------~~~~~~v~~~~~  153 (350)
                      .+++....+. |...|.+++|+|++. +|++++.|+.|++||+..........               ..|...+.+++|
T Consensus       174 ~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  253 (408)
T 4a11_B          174 KSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF  253 (408)
T ss_dssp             SSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred             CCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence            9888777664 889999999999998 58899999999999997654332222               467788999999


Q ss_pred             eCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-------CCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeec
Q 018784          154 LHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-------SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM  226 (350)
Q Consensus       154 ~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~  226 (350)
                      ++ ++.++++++.|+.|++||+++++........       .............+++++.++.|++||+.+...+..+..
T Consensus       254 ~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~  332 (408)
T 4a11_B          254 TS-DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG  332 (408)
T ss_dssp             CT-TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC
T ss_pred             cC-CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc
Confidence            86 5667888899999999999998765444321       112222233456777888899999999999988887765


Q ss_pred             CCCC-ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcC-CCCEEEEecCCCcEEEecCC
Q 018784          227 PCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSP-GGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       227 ~~~~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp-~~~~lasgs~Dg~v~vw~~~  300 (350)
                      +... ..+.+.+ ++++|++|+.|+.|++||+.+++.+.....+..   ...+.| ....+.+.+.|+.+++|+.+
T Consensus       333 ~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          333 HYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTT---KSQLNPAFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             CSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC------------------------------------------
T ss_pred             CCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEe---ccccccccceeecccCccCceeecCCc
Confidence            5444 3455555 579999999999999999999887655443322   123333 33445678889999999764

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.2e-31  Score=244.43  Aligned_cols=245  Identities=20%  Similarity=0.292  Sum_probs=197.8

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC-------ceeeeccCccCCeEEEEECCCC-cEEEEeeCCC
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDANA-LFSASGSADF   83 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~-------~~~~~l~gH~~~V~~v~~~~~~-~~l~s~s~Dg   83 (350)
                      +.||.++|.+++|+|.  ++.+|++|+.|++|+||+..++       +++..+.+|...|.+++|+|++ .++++++.||
T Consensus        77 ~~~h~~~V~~~~~~p~--~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg  154 (402)
T 2aq5_A           77 VCGHTAPVLDIAWCPH--NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN  154 (402)
T ss_dssp             BCCCSSCEEEEEECTT--CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS
T ss_pred             EecCCCCEEEEEeCCC--CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC
Confidence            5799999999999862  6789999999999999999887       6678899999999999999998 6999999999


Q ss_pred             eEEEeeCCCCCeeeee---eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCc-EEEEEEeCCCCc
Q 018784           84 TAKLWDALTGDEKHSF---EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS-IRTVAWLHSDQT  159 (350)
Q Consensus        84 ~v~vWd~~~~~~~~~~---~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~  159 (350)
                      +|++||+.+++....+   .|...|.+++|+|++.+|++++.|+.|++||+.++.........|.+. +..+.|++ ++.
T Consensus       155 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  233 (402)
T 2aq5_A          155 VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS-EGK  233 (402)
T ss_dssp             CEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS-TTE
T ss_pred             EEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC-CCc
Confidence            9999999998887776   388999999999999999999999999999998755433332345444 78888886 567


Q ss_pred             EEEEE---eCCCeEEEEECCCCce---eEeecCCCCeEEEEEecCCcEEE-EE-cCCcEEEEECCCcce----eeeeecC
Q 018784          160 ILSSC---TDSGGVRLWDARSGKI---VQTLETKSPVTSAEVSRDGRYIT-TA-DGSSVKFWDANHFGL----VKGYNMP  227 (350)
Q Consensus       160 ~~~s~---~~dg~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~~~----~~~~~~~  227 (350)
                      ++++|   +.|+.|++||+++++.   ...+.+...+..++|+|++++++ ++ .|+.|++||+.+...    +..+...
T Consensus       234 ~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~  313 (402)
T 2aq5_A          234 ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSK  313 (402)
T ss_dssp             EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCS
T ss_pred             EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccC
Confidence            78887   7899999999998754   33345667899999999998875 45 489999999988763    2333323


Q ss_pred             CCCceeEecCCCCcEEEEecCCCeEEEEEcccCee
Q 018784          228 CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (350)
Q Consensus       228 ~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~  262 (350)
                      .....+.+.+. +.++++  .++.+++|++.++..
T Consensus       314 ~~v~~~~~sp~-~~~~~s--~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          314 ESQRGMGYMPK-RGLEVN--KCEIARFYKLHERKC  345 (402)
T ss_dssp             SCCSEEEECCG-GGSCGG--GTEEEEEEEEETTEE
T ss_pred             CcccceEEecc-ccccee--cceeEEEEEcCCCcE
Confidence            44556667663 555553  466999999987654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.4e-31  Score=248.43  Aligned_cols=246  Identities=13%  Similarity=0.108  Sum_probs=184.7

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccC--ccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG--HKGAVWSCCLDANALFSASGSADFTAKLWD   89 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~g--H~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd   89 (350)
                      +.||.++|++|+|+|  .++.+|+|||.|++|+|||++++........  +...+.+++|++++.++++|+.||+|++||
T Consensus       160 ~~gH~~~V~~l~f~p--~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd  237 (435)
T 4e54_B          160 GIGAGGSITGLKFNP--LNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLN  237 (435)
T ss_dssp             CCSSSCCCCEEEECS--SCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEE
T ss_pred             ccCCCCCEEEEEEeC--CCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeec
Confidence            469999999999997  3678999999999999999987655443333  344578899999999999999999999999


Q ss_pred             CCCCCeeeeeeccccEeEEEEcCCCC-eEEEeeCCCeEEEEECCCCCCCCe--eecCCCCcEEEEEEeCCCCcEEEEEeC
Q 018784           90 ALTGDEKHSFEHKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPR--EVGNSSGSIRTVAWLHSDQTILSSCTD  166 (350)
Q Consensus        90 ~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~sg~~d~~v~vwd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~s~~~  166 (350)
                      +..........|...|.+++|+|++. +|++|+.|++|++||+........  ....|...|.+++|++ ++.++++++.
T Consensus       238 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l~s~~~  316 (435)
T 4e54_B          238 MDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP-DGARLLTTDQ  316 (435)
T ss_dssp             SSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT-TSSEEEEEES
T ss_pred             cCcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC-CCCeeEEEcC
Confidence            86543333346899999999999876 678999999999999976544322  2346788999999986 5667889999


Q ss_pred             CCeEEEEECCCCceeEeecCCC-------CeEEEEEecCCcEEEEE-------------cCCcEEEEECCCcceeeeeec
Q 018784          167 SGGVRLWDARSGKIVQTLETKS-------PVTSAEVSRDGRYITTA-------------DGSSVKFWDANHFGLVKGYNM  226 (350)
Q Consensus       167 dg~i~iwd~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~-------------~~~~i~vwd~~~~~~~~~~~~  226 (350)
                      |++|++||+++++....+..+.       .+....++|++.+++++             .++.|++||..++..+..+..
T Consensus       317 D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~  396 (435)
T 4e54_B          317 KSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD  396 (435)
T ss_dssp             SSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC
T ss_pred             CCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC
Confidence            9999999999988766654321       23345667766655443             235799999999887766543


Q ss_pred             CCC--Ccee-EecCCCCcEEEEecCCCeEEEEEcccCee
Q 018784          227 PCN--TESA-SLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (350)
Q Consensus       227 ~~~--~~~~-~~~~~~~~~l~sg~~d~~i~v~d~~~~~~  262 (350)
                      +..  ...+ .++| ++.+|++|+ |+.|+|||+.+++.
T Consensus       397 ~~~~~v~s~~~fsp-dg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          397 PESSGISSLNEFNP-MGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             SSCCCCCCEEEECT-TSSCEEEEC-SSEEEECCCC----
T ss_pred             CCCCcEEEEEEECC-CCCEEEEEc-CCcEEEEECCcCee
Confidence            322  2333 3444 688888876 88999999988765

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-31  Score=246.80  Aligned_cols=257  Identities=11%  Similarity=0.107  Sum_probs=191.1

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~   92 (350)
                      .||...|++|+|+|   +|       .++++.+|+.+..+ +.++ +|...|.+++|+|+|.++|+++.||+|++||...
T Consensus        49 ~gh~~~v~~V~FsP---dg-------~~~~~~~~~~~~~~-~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~  116 (588)
T 2j04_A           49 NCNSKNLFHVKEFP---LE-------FENKLDFELAQQNG-LLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK  116 (588)
T ss_dssp             SSBGGGTEEEEEEC---CC-------CCCTTTTSCCCSSC-SSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE
T ss_pred             cCCCccEEEEEECC---CC-------CcceEEEEeCCCce-Eeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc
Confidence            69999999999997   77       56666666643222 2233 5688999999999999999999999999999644


Q ss_pred             CCeeeeeeccc-----cEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCC--C----Ceee----cCCCCcEEEEEEeCCC
Q 018784           93 GDEKHSFEHKH-----IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA--P----PREV----GNSSGSIRTVAWLHSD  157 (350)
Q Consensus        93 ~~~~~~~~h~~-----~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~--~----~~~~----~~~~~~v~~~~~~~~~  157 (350)
                        ....+.|..     .|.+++|+|+|++|++|+.||+|++||+..+..  +    ....    ..|...|.+++|+|++
T Consensus       117 --~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg  194 (588)
T 2j04_A          117 --MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV  194 (588)
T ss_dssp             --EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE
T ss_pred             --eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc
Confidence              444445444     499999999999999999999999999986542  1    1222    5577899999999754


Q ss_pred             CcEEEEEeCCCeEEEEECCCCce---eEeec--CCCCeEEEEEecCCcEEEEEcCCcEEEEECCCccee-eeeecCCCCc
Q 018784          158 QTILSSCTDSGGVRLWDARSGKI---VQTLE--TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV-KGYNMPCNTE  231 (350)
Q Consensus       158 ~~~~~s~~~dg~i~iwd~~~~~~---~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~-~~~~~~~~~~  231 (350)
                         +++++.|++|++||+.+++.   ..++.  +...|.+++|+  +..++++.++.|++||+.+.... ..+.......
T Consensus       195 ---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~  269 (588)
T 2j04_A          195 ---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLENFH  269 (588)
T ss_dssp             ---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSCCC
T ss_pred             ---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCceEE
Confidence               66778899999999988773   34553  34689999999  57777777899999999887663 3222222334


Q ss_pred             eeEe-cCCCCcEEEEecCCCeEEEEEcccCe-----------------------eEEeecCCCcCEEEEEEcCCCCEEEE
Q 018784          232 SASL-EPKLGNIFIAGGEDMWVHVFDFHTGE-----------------------QIGCNKGHHGPVHCVRFSPGGESYAS  287 (350)
Q Consensus       232 ~~~~-~~~~~~~l~sg~~d~~i~v~d~~~~~-----------------------~~~~~~~h~~~v~~l~~sp~~~~las  287 (350)
                      .+.+ ..+++..+++++.||+ ++|....-.                       .+..+. +...|++++|||||+.+|+
T Consensus       270 ~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~~lA~  347 (588)
T 2j04_A          270 IIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGYSIAI  347 (588)
T ss_dssp             EEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSSEEEE
T ss_pred             EEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-cceEEEEEEECCCCCEEEE
Confidence            4555 1345789999999999 999863111                       011111 2345999999999999998


Q ss_pred             ecC
Q 018784          288 GSE  290 (350)
Q Consensus       288 gs~  290 (350)
                      ++.
T Consensus       348 ~~~  350 (588)
T 2j04_A          348 VYD  350 (588)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            874

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=100.00  E-value=2.9e-29  Score=232.08  Aligned_cols=285  Identities=13%  Similarity=0.130  Sum_probs=220.4

Q ss_pred             eCCCCeeEeeC--CCC--ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee------eccccEeE
Q 018784           38 SKDSSPMLRNG--ETG--DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF------EHKHIVRA  107 (350)
Q Consensus        38 s~d~~v~iw~~--~~~--~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~------~h~~~V~~  107 (350)
                      +.|+.++||..  .++  +.+..+..|. .+.+++|++++.++++++.|+.|++||+.+++.....      .|...|.+
T Consensus        96 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~  174 (433)
T 3bws_A           96 PEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVET  174 (433)
T ss_dssp             GGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEE
T ss_pred             cCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeE
Confidence            34444455554  334  5566666554 4558899998889999999999999999988876532      36778999


Q ss_pred             EEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC
Q 018784          108 CAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK  187 (350)
Q Consensus       108 ~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~  187 (350)
                      ++|+|++.++++++.|+.|++||+.+.... .....+...+.+++|.+.+..++++++.|++|++||+++++.+..+...
T Consensus       175 ~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~  253 (433)
T 3bws_A          175 ISIPEHNELWVSQMQANAVHVFDLKTLAYK-ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI  253 (433)
T ss_dssp             EEEGGGTEEEEEEGGGTEEEEEETTTCCEE-EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC
T ss_pred             EEEcCCCEEEEEECCCCEEEEEECCCceEE-EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC
Confidence            999999999999999999999999765433 3334567789999999877777788888999999999999998888888


Q ss_pred             CCeEEEEEecCCcEEEEEc---------CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcc
Q 018784          188 SPVTSAEVSRDGRYITTAD---------GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (350)
Q Consensus       188 ~~v~~~~~~~~~~~l~~~~---------~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~  258 (350)
                      ..+..++++|++++++++.         ++.|++||+++.+.+.....+.....+.+.+....++++++.|+.|++||+.
T Consensus       254 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~  333 (433)
T 3bws_A          254 GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLK  333 (433)
T ss_dssp             SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence            8899999999998776543         6789999999887766654444455566766544677888999999999999


Q ss_pred             cCeeEEeecCCCcCEEEEEEcCCCCEEEEecC---------------CCcEEEecCCCCCcccCCCCCCCcccccccccc
Q 018784          259 TGEQIGCNKGHHGPVHCVRFSPGGESYASGSE---------------DGTIRIWQTNPPNHEENHSGTGNAQTGKLKAST  323 (350)
Q Consensus       259 ~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~---------------Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (350)
                      +++.+..+. +...+.+++|+|++++|++++.               ||.|++||+...+.....               
T Consensus       334 ~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~---------------  397 (433)
T 3bws_A          334 EKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW---------------  397 (433)
T ss_dssp             TTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE---------------
T ss_pred             CCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe---------------
Confidence            988877665 6778999999999998887776               579999998654332211               


Q ss_pred             ccceeeeeeEEEcccchh
Q 018784          324 DEVTRKIEGFHINKEGKA  341 (350)
Q Consensus       324 ~~~~~~i~~~~~~~~g~~  341 (350)
                      .. ...+.++.++|||+.
T Consensus       398 ~~-~~~~~~~~~s~dg~~  414 (433)
T 3bws_A          398 EA-GNQPTGLDVSPDNRY  414 (433)
T ss_dssp             EC-SSSEEEEEECTTSCE
T ss_pred             cC-CCCCceEEEcCCCCE
Confidence            11 224677788888753

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.98  E-value=8.3e-30  Score=242.51  Aligned_cols=306  Identities=12%  Similarity=0.155  Sum_probs=236.6

Q ss_pred             CCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC--CCCCeeeeeeccccEe
Q 018784           29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA--LTGDEKHSFEHKHIVR  106 (350)
Q Consensus        29 ~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~--~~~~~~~~~~h~~~V~  106 (350)
                      |++.++++++.|++|.+||..+++++.++..+.. +..++++|+++++++++.|++|++||+  .+++.+..+.+...++
T Consensus       147 p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~  225 (543)
T 1nir_A          147 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR  225 (543)
T ss_dssp             GGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE
T ss_pred             CCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcc
Confidence            4899999999999999999999999999984333 889999999999999999999999999  7888888888777899


Q ss_pred             EEEEcC----CCCeEEEeeC-CCeEEEEECCCCCCCCeeec----------CCCCcEEEEEEeCCCCcEEEEEeCCCeEE
Q 018784          107 ACAFSE----DTHLLLTGGF-EKILRIFDLNRPDAPPREVG----------NSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (350)
Q Consensus       107 ~~~~~~----~~~~l~sg~~-d~~v~vwd~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~~s~~~dg~i~  171 (350)
                      .++|+|    ++++|++++. +++|.+||..+.+.......          +....+..+.+++.+..++++..++++|.
T Consensus       226 ~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~  305 (543)
T 1nir_A          226 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVL  305 (543)
T ss_dssp             EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             eEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEE
Confidence            999999    9999999884 89999999876543322211          12336888999988888999999999999


Q ss_pred             EEECCCCceeE--eecCCCCeEEEEEecCCcEEEE-E-cCCcEEEEECCCcceeeeeecCCCC---ceeE-ecCCCCcEE
Q 018784          172 LWDARSGKIVQ--TLETKSPVTSAEVSRDGRYITT-A-DGSSVKFWDANHFGLVKGYNMPCNT---ESAS-LEPKLGNIF  243 (350)
Q Consensus       172 iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~-~-~~~~i~vwd~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~l  243 (350)
                      +||+.+.+.+.  .+.....+..+.|+|+++++.+ + .++.|.+||+.+++++..+.....+   .... +.+..+.++
T Consensus       306 vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~  385 (543)
T 1nir_A          306 LVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVW  385 (543)
T ss_dssp             EEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEE
T ss_pred             EEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEE
Confidence            99998876544  5555556778999999997654 3 3679999999999888776642111   1222 345557788


Q ss_pred             EEec-CCCeEEEEEccc-------CeeEEeecCCCcCEEEEEEcCCCCEEEEec-------CCCcEEEecCCCCCcccCC
Q 018784          244 IAGG-EDMWVHVFDFHT-------GEQIGCNKGHHGPVHCVRFSPGGESYASGS-------EDGTIRIWQTNPPNHEENH  308 (350)
Q Consensus       244 ~sg~-~d~~i~v~d~~~-------~~~~~~~~~h~~~v~~l~~sp~~~~lasgs-------~Dg~v~vw~~~~~~~~~~~  308 (350)
                      +++. .|++|.+||+.+       ++.+.++.+|...+..++|+|++++|++++       .+++|.|||+.+.+.....
T Consensus       386 ~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~  465 (543)
T 1nir_A          386 STSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV  465 (543)
T ss_dssp             EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred             EeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEE
Confidence            8876 689999999998       889999999999999999999999999987       3789999999765532000


Q ss_pred             CCCCCccccccccccccceeeeeeEEEcccchh
Q 018784          309 SGTGNAQTGKLKASTDEVTRKIEGFHINKEGKA  341 (350)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~  341 (350)
                      ..     .+.. ....+....+..+.++|||+.
T Consensus       466 ~~-----v~~~-~~~~~~~~~~~~~~~~~~g~~  492 (543)
T 1nir_A          466 LP-----IAEW-ADLGEGAKRVVQPEYNKRGDE  492 (543)
T ss_dssp             EC-----HHHH-HCCCSSCCEEEEEEECSSSSE
T ss_pred             ee-----chhh-cccCCCCCceEeccCCCCCCE
Confidence            00     0000 001233556777788888863

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=2.3e-30  Score=234.37  Aligned_cols=224  Identities=19%  Similarity=0.229  Sum_probs=175.2

Q ss_pred             CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC--CCCeeeee-eccccEeEEEEcCC--CCeEEEeeCCCe
Q 018784           51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL--TGDEKHSF-EHKHIVRACAFSED--THLLLTGGFEKI  125 (350)
Q Consensus        51 ~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~--~~~~~~~~-~h~~~V~~~~~~~~--~~~l~sg~~d~~  125 (350)
                      |+++..+.+|.+.|.+++|++++.+|++|+.||.|++||+.  +......+ .|...|.+++|+|+  +.+|++++.|+.
T Consensus         1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            45677899999999999999999999999999999999997  33444444 58999999999977  999999999999


Q ss_pred             EEEEECCCCCC-CCeeecCCCCcEEEEEEeCCC-CcEEEEEeCCCeEEEEECCCCce--eEee-cCCCCeEEEEEecCCc
Q 018784          126 LRIFDLNRPDA-PPREVGNSSGSIRTVAWLHSD-QTILSSCTDSGGVRLWDARSGKI--VQTL-ETKSPVTSAEVSRDGR  200 (350)
Q Consensus       126 v~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~dg~i~iwd~~~~~~--~~~~-~~~~~v~~~~~~~~~~  200 (350)
                      |++||+.++.. .......|...+.+++|.+.. +.++++++.|++|++||++++..  ...+ .+...+.+++|+|...
T Consensus        81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  160 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI  160 (379)
T ss_dssp             EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred             EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence            99999986541 233445678899999998753 67888899999999999988732  2222 3456788888888542


Q ss_pred             EEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCe----eEEeecCCCcCEEEE
Q 018784          201 YITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE----QIGCNKGHHGPVHCV  276 (350)
Q Consensus       201 ~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~----~~~~~~~h~~~v~~l  276 (350)
                      ......                            ....++.++++|+.|+.|++||++++.    ....+.+|...|.++
T Consensus       161 ~~~~~~----------------------------~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~  212 (379)
T 3jrp_A          161 EEDGEH----------------------------NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV  212 (379)
T ss_dssp             -------------------------------------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE
T ss_pred             cccccc----------------------------cCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEE
Confidence            211100                            002357889999999999999998764    445678999999999


Q ss_pred             EEcCC---CCEEEEecCCCcEEEecCCCC
Q 018784          277 RFSPG---GESYASGSEDGTIRIWQTNPP  302 (350)
Q Consensus       277 ~~sp~---~~~lasgs~Dg~v~vw~~~~~  302 (350)
                      +|+|+   +.+|++++.||.|++||+...
T Consensus       213 ~~sp~~~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          213 AWSPTVLLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             EECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             EECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence            99999   899999999999999998764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.98  E-value=1.3e-30  Score=236.53  Aligned_cols=241  Identities=11%  Similarity=0.087  Sum_probs=180.5

Q ss_pred             EeeccCCceeEEEecccCCCccEEEEE-----------eCCCCeeEeeCCCCce----eee-----ccCccCCeEEEEEC
Q 018784           11 VCHGHSRPVVDLFYSPITPDGFFLVSA-----------SKDSSPMLRNGETGDW----IGT-----FEGHKGAVWSCCLD   70 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg~~lasg-----------s~d~~v~iw~~~~~~~----~~~-----l~gH~~~V~~v~~~   70 (350)
                      .+.+|.+.|.+++|+     +..+++|           +.|+++|+|+..+...    ...     ...+...+++++|+
T Consensus        68 ~l~~~~~~v~s~~~~-----~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fS  142 (365)
T 4h5i_A           68 ALEDNDDSPTAIDAS-----KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYIS  142 (365)
T ss_dssp             ECCTTSCCCCEEEEE-----TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEEC
T ss_pred             EccCCCCceEEEEeC-----CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEc
Confidence            357899999988775     3355554           5678889998755422    111     12355668999999


Q ss_pred             CCCcEEE--EeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC-eeecCCCCc
Q 018784           71 ANALFSA--SGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP-REVGNSSGS  147 (350)
Q Consensus        71 ~~~~~l~--s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~-~~~~~~~~~  147 (350)
                      |||++++  |++.|++|||||+.+++.+..+.|...|.+++|+|++++|++++.++ +++|+..++.... .....|...
T Consensus       143 pDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~  221 (365)
T 4h5i_A          143 REGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWS  221 (365)
T ss_dssp             TTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEE
T ss_pred             CCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCC
Confidence            9999865  55689999999999999999999999999999999999999998665 4555554443322 233457778


Q ss_pred             EEEEEEeCCCCcEEEEEeCCC----eEEEEECCCCcee----Eeec-CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCC
Q 018784          148 IRTVAWLHSDQTILSSCTDSG----GVRLWDARSGKIV----QTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANH  217 (350)
Q Consensus       148 v~~~~~~~~~~~~~~s~~~dg----~i~iwd~~~~~~~----~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~  217 (350)
                      +.+++|+++ +..+++++.|+    ++++||+......    ..+. +..+|++++|+|+|++|+++ .|+.|++||+++
T Consensus       222 v~~v~fspd-g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~  300 (365)
T 4h5i_A          222 LSKINFIAD-DTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD  300 (365)
T ss_dssp             EEEEEEEET-TEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred             EEEEEEcCC-CCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC
Confidence            999999875 45566666665    6889998776432    2233 45689999999999998765 589999999999


Q ss_pred             cceeeee-ecCCC-CceeEecCCCCcEEEEecCCCeEEEEEccc
Q 018784          218 FGLVKGY-NMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (350)
Q Consensus       218 ~~~~~~~-~~~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~  259 (350)
                      +++++.+ ..+.. ...+.|.| ++++|++|+.|++|+|||+..
T Consensus       301 ~~~~~~~~~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          301 LSMSKIFKQAHSFAITEVTISP-DSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             TEEEEEETTSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECCT
T ss_pred             CcEEEEecCcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcCC
Confidence            9888765 34443 34566665 689999999999999999853

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.98  E-value=4.6e-30  Score=232.03  Aligned_cols=247  Identities=12%  Similarity=0.090  Sum_probs=176.7

Q ss_pred             EeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeE-EEeeCC
Q 018784           45 LRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLL-LTGGFE  123 (350)
Q Consensus        45 iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~sg~~d  123 (350)
                      ||+..+.+++.++.+|.+.|++++|++++.+|++|+.|+ +++|+..++.......+. .+..+++.++++.+ ++++.|
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d   80 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGVK   80 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSST
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECCc
Confidence            566667777778899999999999999999999988775 789998876655544433 47888899888877 568888


Q ss_pred             CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC-ceeEeecCCCCeEEEEEecCCcEE
Q 018784          124 KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETKSPVTSAEVSRDGRYI  202 (350)
Q Consensus       124 ~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l  202 (350)
                      ++|++||+.+++.....  .+...+.++.+.+.  . ++.+. |++|++||++++ +.+..+..  +...+++++ ..++
T Consensus        81 ~~v~iWd~~~~~~~~~~--~~~~~v~~v~~~~~--~-~~~~~-~~~i~i~d~~~~~~~~~~~~~--~~~~~~~s~-~~la  151 (355)
T 3vu4_A           81 EVVHIWDDVKKQDVSRI--KVDAPVKDLFLSRE--F-IVVSY-GDVISVFKFGNPWKRITDDIR--FGGVCEFSN-GLLV  151 (355)
T ss_dssp             TEEEEEETTTTEEEEEE--ECSSCEEEEEECSS--E-EEEEE-TTEEEEEESSTTCCBSSCCEE--EEEEEEEET-TEEE
T ss_pred             cEEEEEECCCCcEEEEE--ECCCceEEEEEcCC--E-EEEEE-cCEEEEEECCCCceeeEEecc--CCceEEEEc-cEEE
Confidence            99999999866543322  35668999988642  2 33333 679999999988 66666555  444566777 3333


Q ss_pred             EE--EcCCcEEEEECCCcc----------------eeeeeecCCCC-ceeEecCCCCcEEEEecCCCe-EEEEEcccCee
Q 018784          203 TT--ADGSSVKFWDANHFG----------------LVKGYNMPCNT-ESASLEPKLGNIFIAGGEDMW-VHVFDFHTGEQ  262 (350)
Q Consensus       203 ~~--~~~~~i~vwd~~~~~----------------~~~~~~~~~~~-~~~~~~~~~~~~l~sg~~d~~-i~v~d~~~~~~  262 (350)
                      ++  +.++.|++||+++..                .+..+..+... ..+.+.+ ++++|++|+.|++ |++||+.+++.
T Consensus       152 ~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~  230 (355)
T 3vu4_A          152 YSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVL  230 (355)
T ss_dssp             EEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCE
T ss_pred             EeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcE
Confidence            33  357899999998754                13444444333 4455665 6899999999998 99999999999


Q ss_pred             EEeec-C-CCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCC
Q 018784          263 IGCNK-G-HHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPN  303 (350)
Q Consensus       263 ~~~~~-~-h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~  303 (350)
                      +..+. + |...|++++|+|++++|++|+.|++|++||+....
T Consensus       231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            99987 6 99999999999999999999999999999997653

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=9e-30  Score=236.21  Aligned_cols=251  Identities=18%  Similarity=0.295  Sum_probs=188.1

Q ss_pred             eEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (350)
Q Consensus        10 ~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd   89 (350)
                      ..+.+|.++|.+++|     ++.+|++|+.|++|++||..+++.+..+.+|...|.+++++  +.++++|+.||+|++||
T Consensus       167 ~~~~~h~~~v~~l~~-----~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd  239 (435)
T 1p22_A          167 RILTGHTGSVLCLQY-----DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWD  239 (435)
T ss_dssp             EEECCCSSCEEEEEC-----CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEE
T ss_pred             EEEcCCCCcEEEEEE-----CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEe
Confidence            345799999999987     56799999999999999999999999999999999999996  45999999999999999


Q ss_pred             CCCCCee---e-eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe
Q 018784           90 ALTGDEK---H-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (350)
Q Consensus        90 ~~~~~~~---~-~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~  165 (350)
                      +.++...   . ...|...|.+++|  ++++|++|+.|+.|++||+.++.. ......|...+.++.+.   +.++++|+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~---~~~l~~g~  313 (435)
T 1p22_A          240 MASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEF-VRTLNGHKRGIACLQYR---DRLVVSGS  313 (435)
T ss_dssp             CSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEEE---TTEEEEEE
T ss_pred             CCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcE-EEEEcCCCCcEEEEEeC---CCEEEEEe
Confidence            9877654   2 2358889999999  788999999999999999987543 34446678889999883   46888999


Q ss_pred             CCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEE-EEcCCcEEEEECCCcc---------eeeeeecCCC-Ccee
Q 018784          166 DSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYIT-TADGSSVKFWDANHFG---------LVKGYNMPCN-TESA  233 (350)
Q Consensus       166 ~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~---------~~~~~~~~~~-~~~~  233 (350)
                      .||+|++||+++++++..+.. ...+.++.+  ++.+++ ++.|+.|++||+++..         ++..+..+.. ...+
T Consensus       314 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l  391 (435)
T 1p22_A          314 SDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL  391 (435)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEE
Confidence            999999999999999988875 467888888  555555 5568999999987654         4544443332 2333


Q ss_pred             EecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEc
Q 018784          234 SLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFS  279 (350)
Q Consensus       234 ~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s  279 (350)
                      .+   ++.+|++|+.|+.|++||+.+........ ...+..++.|.
T Consensus       392 ~~---~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~  433 (435)
T 1p22_A          392 QF---DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTYI  433 (435)
T ss_dssp             EE---CSSCEEECCSSSEEEEEC-----------------------
T ss_pred             Ee---CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccceeee
Confidence            44   57889999999999999998765443222 22334444443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.7e-29  Score=232.40  Aligned_cols=240  Identities=11%  Similarity=0.091  Sum_probs=195.1

Q ss_pred             eccCCceeEEEecccCCCccEE-EEEeCCCCeeEeeCC--CCceeeecc--CccCCeEEEEECCCCcEEEEeeCCCeEEE
Q 018784           13 HGHSRPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGE--TGDWIGTFE--GHKGAVWSCCLDANALFSASGSADFTAKL   87 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~l-asgs~d~~v~iw~~~--~~~~~~~l~--gH~~~V~~v~~~~~~~~l~s~s~Dg~v~v   87 (350)
                      .+|.++|++++|+|   +|++| ++|+.|++|+||+..  +++.+..+.  +|...|.+++|+|++.++++++.||.|++
T Consensus        99 ~~~~~~v~~~~~s~---d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~  175 (450)
T 2vdu_B           99 PPIYSYIRNLRLTS---DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYS  175 (450)
T ss_dssp             -CCCCCEEEEEECT---TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CccCCceEEEEEcC---CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEE
Confidence            47888999999987   89886 999999999999998  888888887  56789999999999999999999999999


Q ss_pred             eeCCCCCeee----e-eeccccEeEEEEcCC---CCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCc
Q 018784           88 WDALTGDEKH----S-FEHKHIVRACAFSED---THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (350)
Q Consensus        88 Wd~~~~~~~~----~-~~h~~~V~~~~~~~~---~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (350)
                      |++.++....    . ..|...|.+++|+|+   +++|++|+.|++|++||+.++.........|...|.+++|+  ++.
T Consensus       176 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s--d~~  253 (450)
T 2vdu_B          176 IDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG--KDY  253 (450)
T ss_dssp             EETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC--STT
T ss_pred             EecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC--CCC
Confidence            9987766442    3 368899999999999   99999999999999999987655444455788999999998  777


Q ss_pred             EEEEEeCCCeEEEEECCCCceeEeecC--------------------------CCCeEEEEEecCCcEEEEE--cCCcEE
Q 018784          160 ILSSCTDSGGVRLWDARSGKIVQTLET--------------------------KSPVTSAEVSRDGRYITTA--DGSSVK  211 (350)
Q Consensus       160 ~~~s~~~dg~i~iwd~~~~~~~~~~~~--------------------------~~~v~~~~~~~~~~~l~~~--~~~~i~  211 (350)
                      ++++++.|++|++||+++++++..+..                          ...+..+.++|++++++++  .++.|+
T Consensus       254 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~  333 (450)
T 2vdu_B          254 LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCII  333 (450)
T ss_dssp             EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEE
Confidence            888999999999999999998777652                          2468899999999988765  578999


Q ss_pred             EEEC--CCc---ceeeeeecCCCCceeEecCCCCcEEEEecC-------CCeEEEEEccc
Q 018784          212 FWDA--NHF---GLVKGYNMPCNTESASLEPKLGNIFIAGGE-------DMWVHVFDFHT  259 (350)
Q Consensus       212 vwd~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-------d~~i~v~d~~~  259 (350)
                      +||+  ...   ..+..+..+.....+.+.+  +.++++.+.       +..|.+|.+..
T Consensus       334 iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~--~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          334 ILEMSEKQKGDLALKQIITFPYNVISLSAHN--DEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             EEEECSSSTTCEEEEEEEECSSCEEEEEEET--TEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             EEEeccCCCCceeeccEeccCCceEEEEecC--CcEEEEEecccCCCCCCcceEEEEEEc
Confidence            9999  444   5566666665555666766  345555433       45588887653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=9e-30  Score=227.11  Aligned_cols=260  Identities=15%  Similarity=0.193  Sum_probs=186.4

Q ss_pred             eeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC----eeeee-eccccEeEEEEcC--CCCeEEEeeCCCeEE
Q 018784           55 GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD----EKHSF-EHKHIVRACAFSE--DTHLLLTGGFEKILR  127 (350)
Q Consensus        55 ~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~----~~~~~-~h~~~V~~~~~~~--~~~~l~sg~~d~~v~  127 (350)
                      ..+.+|.+.|.+++|++++.+|++++.||.|++||+.++.    ....+ .|...|.+++|+|  ++.+|++++.|+.|+
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~   84 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK   84 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence            3568999999999999999999999999999999998764    22333 5889999999999  699999999999999


Q ss_pred             EEECCCCCCC--------CeeecCCCCcEEEEEEeCCC-CcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecC
Q 018784          128 IFDLNRPDAP--------PREVGNSSGSIRTVAWLHSD-QTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRD  198 (350)
Q Consensus       128 vwd~~~~~~~--------~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~  198 (350)
                      +||+..+...        ......|...+.+++|.+.. +.++++++.|++|++||+++++.+..+.....+..+.+.+.
T Consensus        85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            9999765321        23445788899999998653 67888899999999999998876543322111111111110


Q ss_pred             CcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCC--CCcEEEEecCCCeEEEEEcccCee--EEeecCCCcCEE
Q 018784          199 GRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPK--LGNIFIAGGEDMWVHVFDFHTGEQ--IGCNKGHHGPVH  274 (350)
Q Consensus       199 ~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~sg~~d~~i~v~d~~~~~~--~~~~~~h~~~v~  274 (350)
                      +                          .......+.+.+.  .+.++++++.|+.+.+|+...+..  +..+.+|...|+
T Consensus       165 ~--------------------------~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~  218 (351)
T 3f3f_A          165 N--------------------------HLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIR  218 (351)
T ss_dssp             S--------------------------CSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEE
T ss_pred             C--------------------------cccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCccee
Confidence            0                          0011223333332  367889999999998888777654  667789999999


Q ss_pred             EEEEcCCC----CEEEEecCCCcEEEecCCCCCcccCCCCC-------------------------------CCcccccc
Q 018784          275 CVRFSPGG----ESYASGSEDGTIRIWQTNPPNHEENHSGT-------------------------------GNAQTGKL  319 (350)
Q Consensus       275 ~l~~sp~~----~~lasgs~Dg~v~vw~~~~~~~~~~~~~~-------------------------------~~~~~~~~  319 (350)
                      +++|+|++    .+|++|+.||.|++||+............                               ........
T Consensus       219 ~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (351)
T 3f3f_A          219 SISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL  298 (351)
T ss_dssp             EEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEE
T ss_pred             EEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccE
Confidence            99999998    89999999999999998754322111000                               01111233


Q ss_pred             ccccccceeeeeeEEEcccch
Q 018784          320 KASTDEVTRKIEGFHINKEGK  340 (350)
Q Consensus       320 ~~~~~~~~~~i~~~~~~~~g~  340 (350)
                      ......+...|.++.++|+|+
T Consensus       299 ~~~~~~h~~~v~~~~~s~~~~  319 (351)
T 3f3f_A          299 LSEHDDHNGEVWSVSWNLTGT  319 (351)
T ss_dssp             EEEECTTSSCEEEEEECSSSC
T ss_pred             EEEEecccccEEEEEEcCCCC
Confidence            444455777899999999886

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=4.8e-30  Score=235.09  Aligned_cols=289  Identities=12%  Similarity=0.037  Sum_probs=171.1

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC----------ceeee-------------------ccCccCCeEEEE
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----------DWIGT-------------------FEGHKGAVWSCC   68 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~----------~~~~~-------------------l~gH~~~V~~v~   68 (350)
                      ..+.+.+...+|++..++.++.|+.|++|+....          ..+..                   ...|...+....
T Consensus        17 ~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (393)
T 4gq1_A           17 RPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNS   96 (393)
T ss_dssp             CEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------
T ss_pred             CCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceee
Confidence            4556666555555544444556788999874211          00111                   112223333334


Q ss_pred             ECCCCcEEEEeeCCCeEEEeeCCCCCeeee-----e-eccccEeEEEEcC--------CCCeEEEeeCCCeEEEEECCCC
Q 018784           69 LDANALFSASGSADFTAKLWDALTGDEKHS-----F-EHKHIVRACAFSE--------DTHLLLTGGFEKILRIFDLNRP  134 (350)
Q Consensus        69 ~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~-----~-~h~~~V~~~~~~~--------~~~~l~sg~~d~~v~vwd~~~~  134 (350)
                      +++++.++++++.|++||+||..++.....     + .|.+.|++++|+|        ++++|++|+.|++|+|||+.+.
T Consensus        97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~  176 (393)
T 4gq1_A           97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE  176 (393)
T ss_dssp             CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred             cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence            455667899999999999999987764332     1 4999999999997        7899999999999999999754


Q ss_pred             CCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCC-----CeEEEEEecCCcEEEEEcCCc
Q 018784          135 DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS-----PVTSAEVSRDGRYITTADGSS  209 (350)
Q Consensus       135 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~~~  209 (350)
                      ... .....|...+.+++|.|.+..++++++.|++|++||+++++.........     .+......+.......     
T Consensus       177 ~~~-~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-----  250 (393)
T 4gq1_A          177 GPI-LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHS-----  250 (393)
T ss_dssp             EEE-EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC----------
T ss_pred             cee-eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeec-----
Confidence            433 33445677899999998887889999999999999999887654443211     1111111111100000     


Q ss_pred             EEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcC---------
Q 018784          210 VKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSP---------  280 (350)
Q Consensus       210 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp---------  280 (350)
                                    .........+.+.+.+++.+++++.|+.+++||+..+.....+..|...+..+.+.|         
T Consensus       251 --------------~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  316 (393)
T 4gq1_A          251 --------------SGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFP  316 (393)
T ss_dssp             ---------------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSC
T ss_pred             --------------ccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccC
Confidence                          000112334455556788999999999999999988777666666665555544433         


Q ss_pred             -----------CCCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccchh
Q 018784          281 -----------GGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKA  341 (350)
Q Consensus       281 -----------~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~  341 (350)
                                 ++.++++|+.||.|+|||+......               .....+...|..+.++|||+.
T Consensus       317 ~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~---------------~~~~~~~~~V~svafspdG~~  373 (393)
T 4gq1_A          317 SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN---------------SIPIQLGMPIVDFCWHQDGSH  373 (393)
T ss_dssp             CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC---------------EEEEECSSCEEEEEECTTSSE
T ss_pred             cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE---------------EEecCCCCcEEEEEEcCCCCE
Confidence                       3446789999999999998654322               112234456889999999975

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.6e-30  Score=230.73  Aligned_cols=228  Identities=7%  Similarity=0.029  Sum_probs=176.0

Q ss_pred             ECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCC---------CCCCCe
Q 018784           69 LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR---------PDAPPR  139 (350)
Q Consensus        69 ~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~---------~~~~~~  139 (350)
                      +.+++.++++|+.||+|++||+.+++....+. ...|.++.|+|+   +++++.|++|++|+...         ......
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~  119 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLRE  119 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEE
Confidence            44678899999999999999999988777765 466888889988   99999999999998752         111112


Q ss_pred             eecCCCCcEEEEEEeCC-CCcEEEEEeCCCeEEEEECCCCceeEeec--CCCCeEEEEEecCCcEEEEE-cCCcEEEEEC
Q 018784          140 EVGNSSGSIRTVAWLHS-DQTILSSCTDSGGVRLWDARSGKIVQTLE--TKSPVTSAEVSRDGRYITTA-DGSSVKFWDA  215 (350)
Q Consensus       140 ~~~~~~~~v~~~~~~~~-~~~~~~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~  215 (350)
                      ....|.+.|.+++|.+. ++.++++++.|++|++||+++++.+....  ....+.+++|+|++.+++++ .|+.|++||+
T Consensus       120 ~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~  199 (343)
T 3lrv_A          120 IEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNL  199 (343)
T ss_dssp             EECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEES
T ss_pred             eecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence            22355678999998761 56788899999999999999998866553  34579999999999999874 6899999999


Q ss_pred             CCccee-eeeec-CCC-CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecC---CCcCEE--EEEEcCCCCEEEE
Q 018784          216 NHFGLV-KGYNM-PCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG---HHGPVH--CVRFSPGGESYAS  287 (350)
Q Consensus       216 ~~~~~~-~~~~~-~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~---h~~~v~--~l~~sp~~~~las  287 (350)
                      ++...+ ..+.. +.. ...+.+.+ ++.+|++++ |+.|++||+++++.+..+..   |...+.  +++|+|++++|++
T Consensus       200 ~~~~~~~~~~~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  277 (343)
T 3lrv_A          200 SSPDQASSRFPVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIA  277 (343)
T ss_dssp             SCTTSCCEECCCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEE
T ss_pred             CCCCCCccEEeccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEE
Confidence            998776 55555 333 34555655 588999999 45999999999877655443   444444  6999999999999


Q ss_pred             ecC-CCcEEEecCCCC
Q 018784          288 GSE-DGTIRIWQTNPP  302 (350)
Q Consensus       288 gs~-Dg~v~vw~~~~~  302 (350)
                      ++. |+.|++|++...
T Consensus       278 ~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          278 YSNESNSLTIYKFDKK  293 (343)
T ss_dssp             EETTTTEEEEEEECTT
T ss_pred             ecCCCCcEEEEEEccc
Confidence            998 999999998544

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=4.7e-28  Score=223.38  Aligned_cols=268  Identities=16%  Similarity=0.112  Sum_probs=200.6

Q ss_pred             cCCCc-cEEEEEe----CCC----CeeEeeC--CCCcee--eeccCccCCeEEEEECC--------------CCcEEEEe
Q 018784           27 ITPDG-FFLVSAS----KDS----SPMLRNG--ETGDWI--GTFEGHKGAVWSCCLDA--------------NALFSASG   79 (350)
Q Consensus        27 ~s~dg-~~lasgs----~d~----~v~iw~~--~~~~~~--~~l~gH~~~V~~v~~~~--------------~~~~l~s~   79 (350)
                      +.+.| .++++|+    .||    +++|||+  .+++.+  ..+.+|...++.+++++              .+..++.+
T Consensus        70 w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~  149 (415)
T 2hqs_A           70 WSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYV  149 (415)
T ss_dssp             HHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEE
T ss_pred             HHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEE
Confidence            33455 4777887    567    8999999  999887  56899998887776653              14445544


Q ss_pred             eCC------CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCC---eEEEEECCCCCCCCeeecCCCCcEEE
Q 018784           80 SAD------FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK---ILRIFDLNRPDAPPREVGNSSGSIRT  150 (350)
Q Consensus        80 s~D------g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~---~v~vwd~~~~~~~~~~~~~~~~~v~~  150 (350)
                      +.+      +.|++||...........|...|.+++|+|+|+.|++++.++   .|++||+.+++.  .....+.+.+.+
T Consensus       150 s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~--~~l~~~~~~~~~  227 (415)
T 2hqs_A          150 VQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGA  227 (415)
T ss_dssp             EECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EEEECCSSCEEE
T ss_pred             EecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE--EEeecCCCcccC
Confidence            443      799999998665555567889999999999999999999875   999999986543  344556778999


Q ss_pred             EEEeCCCCcEEEEEeCCCe--EEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEc--CC--cEEEEECCCcceeeee
Q 018784          151 VAWLHSDQTILSSCTDSGG--VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD--GS--SVKFWDANHFGLVKGY  224 (350)
Q Consensus       151 ~~~~~~~~~~~~s~~~dg~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~--~i~vwd~~~~~~~~~~  224 (350)
                      ++|+|++..++++++.|+.  |++||+++++......+...+..+.|+|+|++|+.+.  ++  .|.+||+.+..... +
T Consensus       228 ~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l  306 (415)
T 2hqs_A          228 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-I  306 (415)
T ss_dssp             EEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-C
T ss_pred             EEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-E
Confidence            9999877767768776654  9999999888754444556789999999999776543  33  68888988765432 2


Q ss_pred             ecCC-CCceeEecCCCCcEEEEecCC---CeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCC---cEEEe
Q 018784          225 NMPC-NTESASLEPKLGNIFIAGGED---MWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG---TIRIW  297 (350)
Q Consensus       225 ~~~~-~~~~~~~~~~~~~~l~sg~~d---~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg---~v~vw  297 (350)
                      .... ......+.+ ++++|++++.+   ..|++||+.+++.. .+..|. .+.+++|+|+|++|++++.|+   .|++|
T Consensus       307 ~~~~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~  383 (415)
T 2hqs_A          307 TWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLV  383 (415)
T ss_dssp             CCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEE
T ss_pred             ecCCCcccCeEECC-CCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEE
Confidence            2222 223445555 57777777654   58999999988764 455554 899999999999999888877   79999


Q ss_pred             cCC
Q 018784          298 QTN  300 (350)
Q Consensus       298 ~~~  300 (350)
                      |+.
T Consensus       384 d~~  386 (415)
T 2hqs_A          384 STD  386 (415)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            975

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=3.5e-28  Score=213.35  Aligned_cols=174  Identities=11%  Similarity=0.008  Sum_probs=133.3

Q ss_pred             CCCCeeEeeC-CCCceeeeccCccCCeEEEEECC---CCcEEEEeeCCCeEEEeeCCCCCeeeeee-c---cccEeEEEE
Q 018784           39 KDSSPMLRNG-ETGDWIGTFEGHKGAVWSCCLDA---NALFSASGSADFTAKLWDALTGDEKHSFE-H---KHIVRACAF  110 (350)
Q Consensus        39 ~d~~v~iw~~-~~~~~~~~l~gH~~~V~~v~~~~---~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-h---~~~V~~~~~  110 (350)
                      .|++|++|++ .+|+.+..+.+|...+..++|++   ++.+++|+|.|++|||||+.+++.+.++. |   ...|.+++|
T Consensus       155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf  234 (356)
T 2w18_A          155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY  234 (356)
T ss_dssp             TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred             CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence            3888888888 45888888888888888888887   67899999999999999999999988885 3   346778899


Q ss_pred             cCCCCeE------------EEeeCCCeEEEEECCCCCCCCee----ecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 018784          111 SEDTHLL------------LTGGFEKILRIFDLNRPDAPPRE----VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD  174 (350)
Q Consensus       111 ~~~~~~l------------~sg~~d~~v~vwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd  174 (350)
                      +|++.++            ++|+.|++|++||+.++......    ...|.+.+.+..+.   +.++++++.|++|+|||
T Consensus       235 SpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWD  311 (356)
T 2w18_A          235 SEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWD  311 (356)
T ss_dssp             EETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEE
T ss_pred             CCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEE
Confidence            9999876            56889999999999765432111    12333344444332   56789999999999999


Q ss_pred             CCCCceeEeecCC-CC-eEEEEEecCCcEEEEE-cCCcEEEEEC
Q 018784          175 ARSGKIVQTLETK-SP-VTSAEVSRDGRYITTA-DGSSVKFWDA  215 (350)
Q Consensus       175 ~~~~~~~~~~~~~-~~-v~~~~~~~~~~~l~~~-~~~~i~vwd~  215 (350)
                      +++++++.++..+ .. +..++|+|+|++|+++ .|++|++||.
T Consensus       312 l~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          312 LLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             TTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            9999999999854 33 4468999999988765 5899999985

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.6e-28  Score=240.43  Aligned_cols=220  Identities=19%  Similarity=0.207  Sum_probs=171.6

Q ss_pred             eeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC--CCeeeee-eccccEeEEEEcCC--CCeEEEeeCCCeEEEE
Q 018784           55 GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT--GDEKHSF-EHKHIVRACAFSED--THLLLTGGFEKILRIF  129 (350)
Q Consensus        55 ~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~--~~~~~~~-~h~~~V~~~~~~~~--~~~l~sg~~d~~v~vw  129 (350)
                      ..+.+|.+.|++++|++++.++++|+.||+|++||+..  +.....+ .|...|.+++|+|+  +++|++|+.|++|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            46899999999999999999999999999999999873  3444444 58999999999988  9999999999999999


Q ss_pred             ECCCCCC-CCeeecCCCCcEEEEEEeCCC-CcEEEEEeCCCeEEEEECCCCce---eEeecCCCCeEEEEEecCCcEEEE
Q 018784          130 DLNRPDA-PPREVGNSSGSIRTVAWLHSD-QTILSSCTDSGGVRLWDARSGKI---VQTLETKSPVTSAEVSRDGRYITT  204 (350)
Q Consensus       130 d~~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~dg~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~  204 (350)
                      |+.++.. .......|...|.+++|++.. +.++++|+.||+|++||++++..   .....+...+.++.|+|.......
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~  162 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence            9976531 223445688899999998753 67888999999999999988732   222234567888888875311100


Q ss_pred             EcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccC----eeEEeecCCCcCEEEEEEcC
Q 018784          205 ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG----EQIGCNKGHHGPVHCVRFSP  280 (350)
Q Consensus       205 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~----~~~~~~~~h~~~v~~l~~sp  280 (350)
                      .                            .....++.++++|+.|+.|++||++++    .....+.+|..+|++++|+|
T Consensus       163 ~----------------------------~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp  214 (753)
T 3jro_A          163 E----------------------------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP  214 (753)
T ss_dssp             --------------------------------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC
T ss_pred             c----------------------------cccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEecc
Confidence            0                            000124678999999999999999876    45567789999999999999


Q ss_pred             C---CCEEEEecCCCcEEEecCCCC
Q 018784          281 G---GESYASGSEDGTIRIWQTNPP  302 (350)
Q Consensus       281 ~---~~~lasgs~Dg~v~vw~~~~~  302 (350)
                      +   +.+|++|+.||.|++||+...
T Consensus       215 ~~~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          215 TVLLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             CCSSSEEEEEEESSSCEEEEEESSS
T ss_pred             CCCCCCEEEEEecCCEEEEecCCCC
Confidence            9   899999999999999998764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=3.4e-26  Score=217.67  Aligned_cols=281  Identities=11%  Similarity=0.082  Sum_probs=217.0

Q ss_pred             eeEEEecccCCCccEEEEEeCCCCeeEeeC--CCCceeeeccCccCCeEEEEECC----CCcEEEEee-CCCeEEEeeCC
Q 018784           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNG--ETGDWIGTFEGHKGAVWSCCLDA----NALFSASGS-ADFTAKLWDAL   91 (350)
Q Consensus        19 v~~~~~~~~s~dg~~lasgs~d~~v~iw~~--~~~~~~~~l~gH~~~V~~v~~~~----~~~~l~s~s-~Dg~v~vWd~~   91 (350)
                      +..++|+|   ||++|++++.|++|++||+  .+++++.++.. ...++.++|+|    +++++++++ .+++|.+||..
T Consensus       181 ~~~v~~sp---dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~  256 (543)
T 1nir_A          181 VHISRMSA---SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE  256 (543)
T ss_dssp             EEEEEECT---TSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT
T ss_pred             cceEEECC---CCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc
Confidence            78888886   9999999999999999999  88999888884 45578999999    999998887 58999999999


Q ss_pred             CCCeeeeee-----------ccc-cEeEEEEcCCCC-eEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCC
Q 018784           92 TGDEKHSFE-----------HKH-IVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ  158 (350)
Q Consensus        92 ~~~~~~~~~-----------h~~-~V~~~~~~~~~~-~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (350)
                      +++.+..+.           |.. .+.++.++|++. ++++...++.|.+||+.+..........+...+..++|+++++
T Consensus       257 t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~  336 (543)
T 1nir_A          257 TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHR  336 (543)
T ss_dssp             TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSC
T ss_pred             ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCC
Confidence            988777664           222 688999999765 4567778999999999765433211223455677888988777


Q ss_pred             cEEEEEeCCCeEEEEECCCCceeEeecC----C-CCeEEEEEecC-CcEEEEEc--CCcEEEEECCC-------cceeee
Q 018784          159 TILSSCTDSGGVRLWDARSGKIVQTLET----K-SPVTSAEVSRD-GRYITTAD--GSSVKFWDANH-------FGLVKG  223 (350)
Q Consensus       159 ~~~~s~~~dg~i~iwd~~~~~~~~~~~~----~-~~v~~~~~~~~-~~~l~~~~--~~~i~vwd~~~-------~~~~~~  223 (350)
                      .+++++..+++|.+||+.+++++..+..    + .....+ ++|+ +.+++++.  +++|.+||+.+       +++++.
T Consensus       337 ~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~  415 (543)
T 1nir_A          337 YFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAE  415 (543)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE
T ss_pred             EEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEE
Confidence            7777887889999999999998887763    1 122222 4677 56666653  68999999988       788888


Q ss_pred             eecCCCC-ceeEecCCCCcEEEEec-------CCCeEEEEEcccCeeE-Eee--------cCCCcCEEEEEEcCCCCEEE
Q 018784          224 YNMPCNT-ESASLEPKLGNIFIAGG-------EDMWVHVFDFHTGEQI-GCN--------KGHHGPVHCVRFSPGGESYA  286 (350)
Q Consensus       224 ~~~~~~~-~~~~~~~~~~~~l~sg~-------~d~~i~v~d~~~~~~~-~~~--------~~h~~~v~~l~~sp~~~~la  286 (350)
                      +..+... ..+.++| +++.|.+++       .+++|.+||+.+++.. ..+        ..+...+..+.|+|+|+.++
T Consensus       416 l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~  494 (543)
T 1nir_A          416 LQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW  494 (543)
T ss_dssp             EECSCSCCCCEECCT-TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEE
T ss_pred             EEcCCCCceEEEcCC-CCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEE
Confidence            8776543 4555665 578888876       2679999999988766 332        35677899999999999887


Q ss_pred             Ee-----cCCCcEEEecCCCCCcc
Q 018784          287 SG-----SEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       287 sg-----s~Dg~v~vw~~~~~~~~  305 (350)
                      .+     +.|+.|.|||..+.+..
T Consensus       495 ~s~~~~~~~~~~i~v~D~~t~~~~  518 (543)
T 1nir_A          495 FSVWNGKNDSSALVVVDDKTLKLK  518 (543)
T ss_dssp             EEEECCTTSCCEEEEEETTTTEEE
T ss_pred             EEeecCCCCCCeEEEEECCCceEE
Confidence            54     35899999998776544

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=7.5e-27  Score=216.33  Aligned_cols=209  Identities=19%  Similarity=0.308  Sum_probs=174.5

Q ss_pred             cceeEeeccCCceeEEEecccCCCcc-EEEEEeCCCCeeEeeCCCCce-------eeeccCccCCeEEEEECC-CCcEEE
Q 018784            7 AVPLVCHGHSRPVVDLFYSPITPDGF-FLVSASKDSSPMLRNGETGDW-------IGTFEGHKGAVWSCCLDA-NALFSA   77 (350)
Q Consensus         7 ~~~~~~~gH~~~v~~~~~~~~s~dg~-~lasgs~d~~v~iw~~~~~~~-------~~~l~gH~~~V~~v~~~~-~~~~l~   77 (350)
                      .....+.+|..+|.+++|+|   ++. +|++|+.|++|++|++.++..       ...+.+|...|.+++|+| ++.+++
T Consensus       172 ~~~~~~~~h~~~v~~l~~~~---~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~  248 (430)
T 2xyi_A          172 QPDLRLRGHQKEGYGLSWNP---NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFG  248 (430)
T ss_dssp             CCSEEEECCSSCCCCEEECT---TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEE
T ss_pred             CCcEEecCCCCCeEEEEeCC---CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEE
Confidence            33445689999999999987   666 999999999999999987322       456789999999999999 688999


Q ss_pred             EeeCCCeEEEeeCCCC---Ceeeee-eccccEeEEEEcCCCC-eEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEE
Q 018784           78 SGSADFTAKLWDALTG---DEKHSF-EHKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVA  152 (350)
Q Consensus        78 s~s~Dg~v~vWd~~~~---~~~~~~-~h~~~V~~~~~~~~~~-~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~  152 (350)
                      +++.||.|++||+.++   .....+ .|...|++++|+|++. +|++|+.|+.|++||+.....+......|...|.+++
T Consensus       249 s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~  328 (430)
T 2xyi_A          249 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQ  328 (430)
T ss_dssp             EEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEE
T ss_pred             EEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEE
Confidence            9999999999999876   344444 6889999999999987 6889999999999999876666666777899999999


Q ss_pred             EeCCCCcEEEEEeCCCeEEEEECCC--------------CceeEeecC-CCCeEEEEEecCCc-EEE-EEcCCcEEEEEC
Q 018784          153 WLHSDQTILSSCTDSGGVRLWDARS--------------GKIVQTLET-KSPVTSAEVSRDGR-YIT-TADGSSVKFWDA  215 (350)
Q Consensus       153 ~~~~~~~~~~s~~~dg~i~iwd~~~--------------~~~~~~~~~-~~~v~~~~~~~~~~-~l~-~~~~~~i~vwd~  215 (350)
                      |++.+..++++++.|++|++||++.              .+.+..... ...+..++|+|++. +++ ++.++.|++|++
T Consensus       329 ~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~  408 (430)
T 2xyi_A          329 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM  408 (430)
T ss_dssp             ECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred             ECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEc
Confidence            9988888899999999999999987              244455444 45799999999998 554 556899999998


Q ss_pred             CCc
Q 018784          216 NHF  218 (350)
Q Consensus       216 ~~~  218 (350)
                      ...
T Consensus       409 ~~~  411 (430)
T 2xyi_A          409 AEN  411 (430)
T ss_dssp             CHH
T ss_pred             ccc
Confidence            653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=6.4e-26  Score=209.11  Aligned_cols=268  Identities=14%  Similarity=0.064  Sum_probs=201.6

Q ss_pred             eEeeccCCceeEEEeccc-----------CCCccEEEEEeCC------CCeeEeeCCCCceeeeccCccCCeEEEEECCC
Q 018784           10 LVCHGHSRPVVDLFYSPI-----------TPDGFFLVSASKD------SSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN   72 (350)
Q Consensus        10 ~~~~gH~~~v~~~~~~~~-----------s~dg~~lasgs~d------~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~   72 (350)
                      ..+.+|...+..+++++.           .+.+..++.++.+      ++|++||... .....+.+|...|.+++|+|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spd  189 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPD  189 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTT
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCC
Confidence            335788888887776531           1124456666654      7899999874 456788899999999999999


Q ss_pred             CcEEEEeeCCC---eEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEE-EeeCCCe--EEEEECCCCCCCCeeecCCCC
Q 018784           73 ALFSASGSADF---TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL-TGGFEKI--LRIFDLNRPDAPPREVGNSSG  146 (350)
Q Consensus        73 ~~~l~s~s~Dg---~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-sg~~d~~--v~vwd~~~~~~~~~~~~~~~~  146 (350)
                      ++.+++++.|+   .|++||+.+++......|...+.+++|+|+|+.|+ +++.|+.  |.+||+.++..  ..+..+..
T Consensus       190 g~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~--~~l~~~~~  267 (415)
T 2hqs_A          190 GSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRS  267 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EECCCCSS
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE--EeCcCCCC
Confidence            99999999885   99999999988776667888999999999999887 6666554  99999976542  44455677


Q ss_pred             cEEEEEEeCCCCcEEEEEeCCC--eEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEc----CCcEEEEECCCcce
Q 018784          147 SIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD----GSSVKFWDANHFGL  220 (350)
Q Consensus       147 ~v~~~~~~~~~~~~~~s~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~~i~vwd~~~~~~  220 (350)
                      .+.+++|++++..+++++..++  .|.+||+.+++..........+..++|+|+|++|+.+.    +..|.+||+.+...
T Consensus       268 ~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~  347 (415)
T 2hqs_A          268 NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV  347 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred             cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE
Confidence            8999999976665666554455  68888998887544333456788899999999886543    24799999988765


Q ss_pred             eeeeecCCCCceeEecCCCCcEEEEecCCC---eEEEEEcccCeeEEeecCCCcCEEEEEEcCCCC
Q 018784          221 VKGYNMPCNTESASLEPKLGNIFIAGGEDM---WVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGE  283 (350)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~---~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~  283 (350)
                      .. +..........+.| ++++|++++.++   .|++||+. +.....+.+|.+.|.+++|+|...
T Consensus       348 ~~-l~~~~~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          348 QV-LSSTFLDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             EE-CCCSSSCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred             EE-ecCCCCcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence            32 32222344556665 578888887776   79999986 556678889999999999999753

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.95  E-value=1.7e-24  Score=192.84  Aligned_cols=270  Identities=8%  Similarity=0.056  Sum_probs=199.1

Q ss_pred             CccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEe-eCCCeEEEeeCCCCCe-eeeeeccccEeE
Q 018784           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASG-SADFTAKLWDALTGDE-KHSFEHKHIVRA  107 (350)
Q Consensus        30 dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~-s~Dg~v~vWd~~~~~~-~~~~~h~~~V~~  107 (350)
                      .+..+++++.+++|++||.++++.+..+..+...+ .++|++++.+++.+ ..++.|.+||..+++. ...+.+......
T Consensus         9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~   87 (331)
T 3u4y_A            9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMA   87 (331)
T ss_dssp             CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCC
T ss_pred             CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCcc
Confidence            45668899999999999999999988887776667 99999999865554 4489999999998876 555554444455


Q ss_pred             -EEEcCCCCeEEEeeCCC---eEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe-EEEEECCCCcee-
Q 018784          108 -CAFSEDTHLLLTGGFEK---ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG-VRLWDARSGKIV-  181 (350)
Q Consensus       108 -~~~~~~~~~l~sg~~d~---~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~-i~iwd~~~~~~~-  181 (350)
                       ++|+|++++|+++..++   .|.+||+.+.+... .. ........++|+++++.+++++..++. |.+|++.....+ 
T Consensus        88 ~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~-~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~  165 (331)
T 3u4y_A           88 DVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIS-TI-PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLF  165 (331)
T ss_dssp             CEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEE-EE-ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEE
T ss_pred             ceEECCCCCEEEEecCCCCcccEEEEECCCCCeEE-EE-ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEe
Confidence             99999999999655553   99999997654322 22 234457899999877778888787788 999998754332 


Q ss_pred             ----EeecCCCCeEEEEEecCCcEE-EEE-cCCcEEEEECCCcce---eeeeecCCCCceeEecCCCCc-EEEEecCCCe
Q 018784          182 ----QTLETKSPVTSAEVSRDGRYI-TTA-DGSSVKFWDANHFGL---VKGYNMPCNTESASLEPKLGN-IFIAGGEDMW  251 (350)
Q Consensus       182 ----~~~~~~~~v~~~~~~~~~~~l-~~~-~~~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~l~sg~~d~~  251 (350)
                          ..+........+.|+|+|+++ ++. .++.|++||+.+.+.   +..+........+.+.++ ++ ++++...++.
T Consensus       166 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~v~~~~~~~  244 (331)
T 3u4y_A          166 DTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRD-GSTVYVLTESTVD  244 (331)
T ss_dssp             EEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTT-SSEEEEECSSEEE
T ss_pred             ecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCC-CCEEEEEEcCCCE
Confidence                233344567899999999855 444 367899999998877   666666555566777764 55 5556666888


Q ss_pred             EEEEEcccCee--EEeecCC----CcC---EEEEEEcCCCCEEE-EecCCCcEEEecCCCCC
Q 018784          252 VHVFDFHTGEQ--IGCNKGH----HGP---VHCVRFSPGGESYA-SGSEDGTIRIWQTNPPN  303 (350)
Q Consensus       252 i~v~d~~~~~~--~~~~~~h----~~~---v~~l~~sp~~~~la-sgs~Dg~v~vw~~~~~~  303 (350)
                      |.+||+.+++.  +..+..+    ..+   +..++|+|++++|+ ++..++.|.+||+..+.
T Consensus       245 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          245 VFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             EEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             EEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            99999998876  3333222    222   35689999999875 55567799999987543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.94  E-value=1.5e-24  Score=214.11  Aligned_cols=277  Identities=10%  Similarity=-0.002  Sum_probs=204.8

Q ss_pred             CCceeEEEecccCCCccEEEEEeC-CC-----CeeEeeCCCCceeeeccCccCC------------------------eE
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASK-DS-----SPMLRNGETGDWIGTFEGHKGA------------------------VW   65 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~-d~-----~v~iw~~~~~~~~~~l~gH~~~------------------------V~   65 (350)
                      ...+..++|+|   ||++|++++. |+     +|++||..+++....+..|...                        |.
T Consensus        36 ~~~~~~~~~Sp---dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (741)
T 2ecf_A           36 GPTLMKPKVAP---DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV  112 (741)
T ss_dssp             CCCCEEEEECT---TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESC
T ss_pred             CCCCCCceEec---CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence            44688998886   9999999998 88     8999999999887766655433                        78


Q ss_pred             EEEECCCCcEEEEeeCCCeEEEeeCCCC---CeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeec
Q 018784           66 SCCLDANALFSASGSADFTAKLWDALTG---DEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG  142 (350)
Q Consensus        66 ~v~~~~~~~~l~s~s~Dg~v~vWd~~~~---~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~  142 (350)
                      .++|+||++++++++. +.|++||+.++   .......|...+..++|+|+|++|+.++ ++.|.+||+.++... ....
T Consensus       113 ~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~-~~~~  189 (741)
T 2ecf_A          113 DYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQM-QLTA  189 (741)
T ss_dssp             CCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEE-ECCC
T ss_pred             eeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEE-Eecc
Confidence            8999999999998876 99999999888   5555556778899999999999999887 469999999764322 1111


Q ss_pred             CCCCc----------------EEEEEEeCCCCcEEEEEeCCC--------------------------------eEEEEE
Q 018784          143 NSSGS----------------IRTVAWLHSDQTILSSCTDSG--------------------------------GVRLWD  174 (350)
Q Consensus       143 ~~~~~----------------v~~~~~~~~~~~~~~s~~~dg--------------------------------~i~iwd  174 (350)
                      .+...                +..++|++++..++++..+.+                                .|.+||
T Consensus       190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d  269 (741)
T 2ecf_A          190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS  269 (741)
T ss_dssp             CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred             CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence            12211                367889876666655543321                                789999


Q ss_pred             CCC-CceeEeec---CCCCeEEEEEecCCcEEEEEc------CCcEEEEECCCcceeeeeecCCC-----CceeEecCCC
Q 018784          175 ARS-GKIVQTLE---TKSPVTSAEVSRDGRYITTAD------GSSVKFWDANHFGLVKGYNMPCN-----TESASLEPKL  239 (350)
Q Consensus       175 ~~~-~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~------~~~i~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~~  239 (350)
                      +.+ ++......   +...+..++| |||++|+...      +..|++||+.+......+..+..     .....+.+ +
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~sp-d  347 (741)
T 2ecf_A          270 PAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLD-D  347 (741)
T ss_dssp             SSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECT-T
T ss_pred             CCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECC-C
Confidence            988 77544332   3456889999 9999876432      35799999998776554433221     23455665 4


Q ss_pred             CcEEEEecCCCeEEEEEcc-cCeeEEeecCCCcCEEEE-EEcCCCCEEE-EecCCC--cEEEecCCC
Q 018784          240 GNIFIAGGEDMWVHVFDFH-TGEQIGCNKGHHGPVHCV-RFSPGGESYA-SGSEDG--TIRIWQTNP  301 (350)
Q Consensus       240 ~~~l~sg~~d~~i~v~d~~-~~~~~~~~~~h~~~v~~l-~~sp~~~~la-sgs~Dg--~v~vw~~~~  301 (350)
                      ++++++++.|+.++||.+. ++. ...+..|...|..+ .|+|+++.|+ +++.|+  .++||++..
T Consensus       348 g~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          348 GSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             SCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             CeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence            6788899999988888775 445 77788888889887 5999998764 566666  899998753

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.93  E-value=1.2e-24  Score=189.54  Aligned_cols=254  Identities=14%  Similarity=0.071  Sum_probs=183.0

Q ss_pred             EEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC-CCeeeeee-c-cccEeEEEEc
Q 018784           35 VSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT-GDEKHSFE-H-KHIVRACAFS  111 (350)
Q Consensus        35 asgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~-~~~~~~~~-h-~~~V~~~~~~  111 (350)
                      .+++.|++|++||..+++.. .+..|...|.+++|+|++.++++++ ++.|++||+.+ ++...... + ...+.+++|+
T Consensus        16 ~~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s   93 (297)
T 2ojh_A           16 PGGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS   93 (297)
T ss_dssp             --CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred             CCCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence            45678999999999988876 5666899999999999999999876 88999999988 76655543 3 3678999999


Q ss_pred             CCCCeEEEee--CCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEEC--CCCceeEeecCC
Q 018784          112 EDTHLLLTGG--FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA--RSGKIVQTLETK  187 (350)
Q Consensus       112 ~~~~~l~sg~--~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~--~~~~~~~~~~~~  187 (350)
                      |++++|++++  .++..++|.+............+ ..+..++|++++..+++++..|+.+++|++  .+++........
T Consensus        94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  172 (297)
T 2ojh_A           94 PDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGE  172 (297)
T ss_dssp             TTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSS
T ss_pred             CCCCEEEEEEeCCCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCC
Confidence            9999999988  34555666543222223333333 348888998877777778888899999985  445544444455


Q ss_pred             CCeEEEEEecCCcEEEE-E-cCCcEEEEECC-CcceeeeeecCCC-CceeEecCCCCcEEEEecCC-----------CeE
Q 018784          188 SPVTSAEVSRDGRYITT-A-DGSSVKFWDAN-HFGLVKGYNMPCN-TESASLEPKLGNIFIAGGED-----------MWV  252 (350)
Q Consensus       188 ~~v~~~~~~~~~~~l~~-~-~~~~i~vwd~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~l~sg~~d-----------~~i  252 (350)
                      ..+..+.|+|++++++. + .++.+++|++. ....+..+..+.. ...+.+.+ ++++|++++.+           ..|
T Consensus       173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~l  251 (297)
T 2ojh_A          173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSP-SGDKVVFVSYDADVFDHPRDLDVRV  251 (297)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECT-TSSEEEEEEEETTCCSCCSSEEEEE
T ss_pred             CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECC-CCCEEEEEEcCCCCCcccccCceEE
Confidence            67899999999987654 3 37788999875 3333333332221 22344555 57777777665           569


Q ss_pred             EEEEcccCee--EEeecCCCcCEEEEEEcCCCCEEEEecCCC
Q 018784          253 HVFDFHTGEQ--IGCNKGHHGPVHCVRFSPGGESYASGSEDG  292 (350)
Q Consensus       253 ~v~d~~~~~~--~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg  292 (350)
                      ++||+.+++.  +..+.+|...+.+++|+|++++|++++.|.
T Consensus       252 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          252 QLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            9999988765  444557888999999999999998877653

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.93  E-value=1.5e-23  Score=187.08  Aligned_cols=267  Identities=11%  Similarity=0.156  Sum_probs=183.4

Q ss_pred             cEEEEEeCCCCeeEeeCC-CCc--eeeeccCccCCeEEEEECCCCcEEEEeeCC-CeEEEeeCC--CCCe--eeeeeccc
Q 018784           32 FFLVSASKDSSPMLRNGE-TGD--WIGTFEGHKGAVWSCCLDANALFSASGSAD-FTAKLWDAL--TGDE--KHSFEHKH  103 (350)
Q Consensus        32 ~~lasgs~d~~v~iw~~~-~~~--~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D-g~v~vWd~~--~~~~--~~~~~h~~  103 (350)
                      .++++++.|+.|++|+.. +++  .+.. ..|...+..++|+|++.++++++.+ +.|++|++.  ++..  ...+....
T Consensus         6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~   84 (343)
T 1ri6_A            6 TVYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG   84 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence            355555889999999985 343  3333 3477788899999999988888776 999999987  5543  23344445


Q ss_pred             cEeEEEEcCCCCeEEEeeC-CCeEEEEECCCCCC-CCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCC-Cce
Q 018784          104 IVRACAFSEDTHLLLTGGF-EKILRIFDLNRPDA-PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS-GKI  180 (350)
Q Consensus       104 ~V~~~~~~~~~~~l~sg~~-d~~v~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~-~~~  180 (350)
                      .+..++|+|++++|++++. ++.|.+||+..+.. ...........+..++|++++..+++++..++.|++||+.+ ++.
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  164 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  164 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence            7899999999998876654 88999999842111 11111223345778888877666766665789999999987 654


Q ss_pred             eE------eecCCCCeEEEEEecCCcEEE-EE-cCCcEEEEECCC--cce--eeeee-cCC------CCceeEecCCCCc
Q 018784          181 VQ------TLETKSPVTSAEVSRDGRYIT-TA-DGSSVKFWDANH--FGL--VKGYN-MPC------NTESASLEPKLGN  241 (350)
Q Consensus       181 ~~------~~~~~~~v~~~~~~~~~~~l~-~~-~~~~i~vwd~~~--~~~--~~~~~-~~~------~~~~~~~~~~~~~  241 (350)
                      ..      .......+..++|+|++++++ ++ .++.|++||+..  ...  ..... .+.      ....+.+.+....
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~  244 (343)
T 1ri6_A          165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH  244 (343)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred             eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence            32      222345678899999998664 44 468899999953  222  22221 111      1123566664334


Q ss_pred             EEEEecCCCeEEEEEcc--cC--eeEEeecCCCcCEEEEEEcCCCCEEEEec-CCCcEEEecCC
Q 018784          242 IFIAGGEDMWVHVFDFH--TG--EQIGCNKGHHGPVHCVRFSPGGESYASGS-EDGTIRIWQTN  300 (350)
Q Consensus       242 ~l~sg~~d~~i~v~d~~--~~--~~~~~~~~h~~~v~~l~~sp~~~~lasgs-~Dg~v~vw~~~  300 (350)
                      +++++..++.|++||+.  ++  +.+..+..+.. +.+++|+|++++|++++ .|+.|.+|+++
T Consensus       245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred             EEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence            55577789999999998  33  34444544444 88999999999877766 68999999764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.93  E-value=3.6e-24  Score=210.69  Aligned_cols=277  Identities=12%  Similarity=0.000  Sum_probs=193.1

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccC---CeEEEEECCCCcEEEEeeCC---------CeE
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG---AVWSCCLDANALFSASGSAD---------FTA   85 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~---~V~~v~~~~~~~~l~s~s~D---------g~v   85 (350)
                      .+..++|+|   ||+++++ +.|+++++||..+++....+.+|..   .|..++|+|||+++++++.+         +.+
T Consensus        18 ~~~~~~~sp---dg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i   93 (723)
T 1xfd_A           18 HDPEAKWIS---DTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYY   93 (723)
T ss_dssp             CCCCCCBSS---SSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEE
T ss_pred             cccccEEcC---CCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeE
Confidence            356676665   9998876 7899999999999998888888875   48999999999999998775         788


Q ss_pred             EEeeCCCCCeeeee---eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCC----------------
Q 018784           86 KLWDALTGDEKHSF---EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG----------------  146 (350)
Q Consensus        86 ~vWd~~~~~~~~~~---~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~----------------  146 (350)
                      .+||+.+++.....   .|...+..++|+|+|+.|+.++. +.|++||+.++... .....+..                
T Consensus        94 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~-~~~~~~~~~~~~~g~~~~v~~ee~  171 (723)
T 1xfd_A           94 VLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAI-RVVSTGKEGVIYNGLSDWLYEEEI  171 (723)
T ss_dssp             EEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCE-EEECCCBTTTEEEEECCHHHHHTT
T ss_pred             EEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceE-EEecCCCCCceECcccceeEEEEe
Confidence            89999888753222   23445889999999999998886 79999999865432 22222222                


Q ss_pred             --cEEEEEEeCCCCcEEEEEeCC---------------------------------CeEEEEECCCCceeEeecC-----
Q 018784          147 --SIRTVAWLHSDQTILSSCTDS---------------------------------GGVRLWDARSGKIVQTLET-----  186 (350)
Q Consensus       147 --~v~~~~~~~~~~~~~~s~~~d---------------------------------g~i~iwd~~~~~~~~~~~~-----  186 (350)
                        .+..++|+|++..++.+..++                                 .+|++||+.+++....+..     
T Consensus       172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~  251 (723)
T 1xfd_A          172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR  251 (723)
T ss_dssp             SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred             ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCC
Confidence              236899987665555443321                                 2799999998886555553     


Q ss_pred             --CCCeEEEEEecCCcEEEEEc-----CCcEEEEECCCcceeeeeecC--CCC----ceeEecCCCCcEEE-E-ecCCC-
Q 018784          187 --KSPVTSAEVSRDGRYITTAD-----GSSVKFWDANHFGLVKGYNMP--CNT----ESASLEPKLGNIFI-A-GGEDM-  250 (350)
Q Consensus       187 --~~~v~~~~~~~~~~~l~~~~-----~~~i~vwd~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~l~-s-g~~d~-  250 (350)
                        ...+..+.|+|||++++...     +..|++||+.+.+....+...  ...    ....+.|+ ++.|+ . +..++ 
T Consensus       252 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~~~~  330 (723)
T 1xfd_A          252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKD-GRKFFFIRAIPQGG  330 (723)
T ss_dssp             GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTT-SCSEEEEEEECCSS
T ss_pred             CccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCC-CCeEEEEEecccCC
Confidence              34678899999999885542     246999999887765443221  111    24566664 55444 3 55666 


Q ss_pred             -----eEEEEE-cccCee--EEeecCCCcCEEE-EEEcCCCCEEEEecCC---CcEEEecCCC
Q 018784          251 -----WVHVFD-FHTGEQ--IGCNKGHHGPVHC-VRFSPGGESYASGSED---GTIRIWQTNP  301 (350)
Q Consensus       251 -----~i~v~d-~~~~~~--~~~~~~h~~~v~~-l~~sp~~~~lasgs~D---g~v~vw~~~~  301 (350)
                           .|++|| ..++..  ...+..+...+.. ++|+|+++.|+..+.+   +.++||+++.
T Consensus       331 ~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~  393 (723)
T 1xfd_A          331 RGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT  393 (723)
T ss_dssp             SSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred             CcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeC
Confidence                 466677 344441  4455544444544 6999999998755544   8899998864

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.93  E-value=9.1e-24  Score=187.99  Aligned_cols=264  Identities=11%  Similarity=0.087  Sum_probs=193.4

Q ss_pred             cEEEEEeCCCCeeEeeCCCCceeeeccC-ccC-CeEEEEECCCCcE-EEEeeCCCeEEEeeCCCCCeeeeeeccc-----
Q 018784           32 FFLVSASKDSSPMLRNGETGDWIGTFEG-HKG-AVWSCCLDANALF-SASGSADFTAKLWDALTGDEKHSFEHKH-----  103 (350)
Q Consensus        32 ~~lasgs~d~~v~iw~~~~~~~~~~l~g-H~~-~V~~v~~~~~~~~-l~s~s~Dg~v~vWd~~~~~~~~~~~h~~-----  103 (350)
                      .+|++++.+++|++||..+++.+..+.. +.. .+..+++++++.. +++++.++.|.+||+.+++....+....     
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            4789999999999999999999887763 322 4778999999965 5677778999999999988776665332     


Q ss_pred             -cEeEEEEcCCCCeEEEee------------CCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784          104 -IVRACAFSEDTHLLLTGG------------FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (350)
Q Consensus       104 -~V~~~~~~~~~~~l~sg~------------~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i  170 (350)
                       .+..++|+|++++|++++            .++.|.+||+.+.+... ... ....+..++|++++..++++   ++.|
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-~~~-~~~~~~~~~~s~dg~~l~~~---~~~i  156 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK-AFE-APRQITMLAWARDGSKLYGL---GRDL  156 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE-EEE-CCSSCCCEEECTTSSCEEEE---SSSE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEE-EEe-CCCCcceeEECCCCCEEEEe---CCeE
Confidence             678899999999998886            57999999997544322 222 23456678888766655554   5789


Q ss_pred             EEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEc--CC-----------------------cEEEEECCCcceeeeee
Q 018784          171 RLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD--GS-----------------------SVKFWDANHFGLVKGYN  225 (350)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~-----------------------~i~vwd~~~~~~~~~~~  225 (350)
                      .+||+.+++.+..+........+.++|+++.+....  ++                       .|.+||+.+.+.. ...
T Consensus       157 ~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~  235 (337)
T 1pby_B          157 HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MRE  235 (337)
T ss_dssp             EEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEE
T ss_pred             EEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eee
Confidence            999999998877766433112336788887554322  12                       4689999887654 222


Q ss_pred             cC---CCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCC
Q 018784          226 MP---CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPP  302 (350)
Q Consensus       226 ~~---~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~  302 (350)
                      ..   .....+.+.+ ++++++++  ++.|++||+.+++.+..+..+ ..+.+++|+|++++|++++.++.|++||+...
T Consensus       236 ~~~~~~~~~~~~~s~-dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~  311 (337)
T 1pby_B          236 VRIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             EEECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred             cCCCCCceeeEEECC-CCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence            21   2233456665 56777776  799999999999887766543 45789999999999988899999999998766


Q ss_pred             Ccc
Q 018784          303 NHE  305 (350)
Q Consensus       303 ~~~  305 (350)
                      +..
T Consensus       312 ~~~  314 (337)
T 1pby_B          312 EKK  314 (337)
T ss_dssp             CEE
T ss_pred             cEE
Confidence            544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.93  E-value=2.6e-23  Score=212.64  Aligned_cols=282  Identities=13%  Similarity=0.093  Sum_probs=204.2

Q ss_pred             eEeeccCCceeEEEecccCCCccEEEEEeCC------CCeeEeeCCCCceeeeccCccCCe-------EEEEECCCCcEE
Q 018784           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKD------SSPMLRNGETGDWIGTFEGHKGAV-------WSCCLDANALFS   76 (350)
Q Consensus        10 ~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d------~~v~iw~~~~~~~~~~l~gH~~~V-------~~v~~~~~~~~l   76 (350)
                      ..+.+|...+.+++|||   ||++||.++.+      ..|++|+..+++ ...+.+|...+       ..++|+||++++
T Consensus        46 ~~lt~~~~~v~~~~~SP---DG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll  121 (1045)
T 1k32_A           46 RKIVSNLGVINNARFFP---DGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLI  121 (1045)
T ss_dssp             EEEECSSSEEEEEEECT---TSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEE
T ss_pred             EEeeeCCCcccCeEECC---CCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEE
Confidence            34578999999999986   99999988754      368999998877 56889999888       999999999988


Q ss_pred             EEeeCC------CeEEEeeCCCCCeeee--------------------------------------------------ee
Q 018784           77 ASGSAD------FTAKLWDALTGDEKHS--------------------------------------------------FE  100 (350)
Q Consensus        77 ~s~s~D------g~v~vWd~~~~~~~~~--------------------------------------------------~~  100 (350)
                      ++++.+      ..|.+|++.++.....                                                  ..
T Consensus       122 ~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~  201 (1045)
T 1k32_A          122 ISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVD  201 (1045)
T ss_dssp             EEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEEC
T ss_pred             EEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcC
Confidence            888765      3577777755432211                                                  12


Q ss_pred             ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCce
Q 018784          101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI  180 (350)
Q Consensus       101 h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~  180 (350)
                      |...+.++.|+++ .++++++.|+++++|.+............+. .+...+|++++..++.+  .++.|.+||+...+ 
T Consensus       202 ~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~--~~~~i~~~d~~~~~-  276 (1045)
T 1k32_A          202 MSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS--KGGSIYIFNPDTEK-  276 (1045)
T ss_dssp             CSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE--ETTEEEEECTTTCC-
T ss_pred             CCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE--eCCEEEEecCCceE-
Confidence            4556777888887 6667788889999998653222223333333 34566888766555544  47899999995443 


Q ss_pred             eEeecCC------------CCeEEEEEe-cCCcEEEEEcCCcEEEEECCCcceeeeeecCC-CCceeEecCCCCcEEEEe
Q 018784          181 VQTLETK------------SPVTSAEVS-RDGRYITTADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAG  246 (350)
Q Consensus       181 ~~~~~~~------------~~v~~~~~~-~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~sg  246 (350)
                      +..+...            ..+..+.|+ |+|++++.+.++.+.+|+.............. ......+.  +++.++++
T Consensus       277 l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s--dg~~l~~~  354 (1045)
T 1k32_A          277 IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD--TKVAFIHG  354 (1045)
T ss_dssp             EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSS--SEEEEEEE
T ss_pred             eeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEEeeeEc--CCCeEEEE
Confidence            3344432            258899999 99998887778899999988765433211111 12233444  67888888


Q ss_pred             cCCCeEE-EEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCC
Q 018784          247 GEDMWVH-VFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPN  303 (350)
Q Consensus       247 ~~d~~i~-v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~  303 (350)
                      +.+..+. +||+.+++... +.+|...+..++|+|+|++|++++.++.|++||+....
T Consensus       355 s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~  411 (1045)
T 1k32_A          355 TREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK  411 (1045)
T ss_dssp             ETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             ECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc
Confidence            8888888 99988776543 44788899999999999999999999999999986544

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=2.6e-22  Score=179.94  Aligned_cols=268  Identities=12%  Similarity=0.101  Sum_probs=200.4

Q ss_pred             CCceeEEEecccCCCccEEEEEeC-------CCCeeEeeCCCCceeeeccCccCCeEEEEECCCCc-EEEEeeCCCeEEE
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASK-------DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKL   87 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~-------d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~-~l~s~s~Dg~v~v   87 (350)
                      ...+..++|+|   +|++|++++.       +++|.+||..+++.+..+... ..+..+++++++. ++++...++.|.+
T Consensus        40 ~~~~~~~~~s~---dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~  115 (353)
T 3vgz_A           40 GKGAYEMAYSQ---QENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTA  115 (353)
T ss_dssp             ESSEEEEEEET---TTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccCccceEECC---CCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEE
Confidence            44677888886   8888877774       567999999999988877643 3466789999998 5566677899999


Q ss_pred             eeCCCCCeeeeeeccc----------cEeEEEEcCCCCeEEEee--CCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeC
Q 018784           88 WDALTGDEKHSFEHKH----------IVRACAFSEDTHLLLTGG--FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLH  155 (350)
Q Consensus        88 Wd~~~~~~~~~~~h~~----------~V~~~~~~~~~~~l~sg~--~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  155 (350)
                      ||..+++....+....          .+.+++|+|+++++++++  .++.|.+||+.+.+... ....+...+..++|++
T Consensus       116 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~s~  194 (353)
T 3vgz_A          116 IDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKT-AIQNTGKMSTGLALDS  194 (353)
T ss_dssp             EETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEE-EECCCCTTCCCCEEET
T ss_pred             EeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEE-EecCCCCccceEEECC
Confidence            9999988776664321          278899999999887765  48899999997654322 2222334467788886


Q ss_pred             CCCcEEEEEeCCCeEEEEECCCCceeEeecC-----CCCeEEEEEecCCcEEEEE-c-CCcEEEEECCCcceeeeeecCC
Q 018784          156 SDQTILSSCTDSGGVRLWDARSGKIVQTLET-----KSPVTSAEVSRDGRYITTA-D-GSSVKFWDANHFGLVKGYNMPC  228 (350)
Q Consensus       156 ~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~-~-~~~i~vwd~~~~~~~~~~~~~~  228 (350)
                      +++. ++.+..++.|.+||+.+++.+..+..     ...+..++++|+++++..+ . ++.|.+||..+.+.+..+..+.
T Consensus       195 dg~~-l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~  273 (353)
T 3vgz_A          195 EGKR-LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE  273 (353)
T ss_dssp             TTTE-EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS
T ss_pred             CCCE-EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC
Confidence            5554 44556689999999999988877654     3357789999999866544 3 4789999999988877776644


Q ss_pred             CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCC
Q 018784          229 NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSED  291 (350)
Q Consensus       229 ~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~D  291 (350)
                       ...+.+.+....++++...++.|.+||+.+++.+..+.... .+.+++|+|++++|+.+..+
T Consensus       274 -~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          274 -SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             -CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECTTSCEEEEEEEC
T ss_pred             -CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcCCCCEEEEEEcc
Confidence             34566666544467777789999999999998887776443 67999999999976655544

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=9e-23  Score=201.34  Aligned_cols=275  Identities=12%  Similarity=0.105  Sum_probs=195.4

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc--eeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE   95 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~--~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~   95 (350)
                      .|..++|+|   ||++|++++. ++|++||+.+++  .+..+..|...+..++|+|||++++.++ ++.|++||+.+++.
T Consensus       110 ~v~~~~~Sp---Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~  184 (741)
T 2ecf_A          110 GIVDYQWSP---DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ  184 (741)
T ss_dssp             ESCCCEECT---TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE
T ss_pred             CcceeEECC---CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE
Confidence            377888876   9999999887 999999998883  4456888889999999999999998876 56999999988765


Q ss_pred             eeeee-cccc----------------EeEEEEcCCCCeEEEeeCCC---------------------------------e
Q 018784           96 KHSFE-HKHI----------------VRACAFSEDTHLLLTGGFEK---------------------------------I  125 (350)
Q Consensus        96 ~~~~~-h~~~----------------V~~~~~~~~~~~l~sg~~d~---------------------------------~  125 (350)
                      ..... +...                +.+++|+|||++|++++.|+                                 .
T Consensus       185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~  264 (741)
T 2ecf_A          185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK  264 (741)
T ss_dssp             EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred             EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence            54332 2221                47899999999999988765                                 7


Q ss_pred             EEEEECCC-CCCCCeeec-CCCCcEEEEEEeCCCCcEEEEEe----CCCeEEEEECCCCceeEeecCCC-----CeEEEE
Q 018784          126 LRIFDLNR-PDAPPREVG-NSSGSIRTVAWLHSDQTILSSCT----DSGGVRLWDARSGKIVQTLETKS-----PVTSAE  194 (350)
Q Consensus       126 v~vwd~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~----~dg~i~iwd~~~~~~~~~~~~~~-----~v~~~~  194 (350)
                      |.+||+.+ +........ .+...+..++| +++..+++++.    .+..|++||+.+++....+..+.     .+..+.
T Consensus       265 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~  343 (741)
T 2ecf_A          265 LGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR  343 (741)
T ss_dssp             EEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE
T ss_pred             EEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE
Confidence            88999876 543221111 35677899999 76666665543    35689999999998766554332     345789


Q ss_pred             EecCCcEEEEEc-CCcEEEEECC-CcceeeeeecCCCCc-ee-EecCCCCcEEEEecCCC--eEEEEEccc-CeeEEeec
Q 018784          195 VSRDGRYITTAD-GSSVKFWDAN-HFGLVKGYNMPCNTE-SA-SLEPKLGNIFIAGGEDM--WVHVFDFHT-GEQIGCNK  267 (350)
Q Consensus       195 ~~~~~~~l~~~~-~~~i~vwd~~-~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~sg~~d~--~i~v~d~~~-~~~~~~~~  267 (350)
                      |+|||++++++. ++.+++|... ... ...+....... .. .+.+....++++++.++  .+++|++.. +.....+.
T Consensus       344 ~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~  422 (741)
T 2ecf_A          344 FLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS  422 (741)
T ss_dssp             ECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred             ECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence            999999776654 5666776554 222 33333322222 23 35654334555666666  899999874 55555665


Q ss_pred             CCCcCEEEEEEcCCCCEEEEecCC----CcEEEecCC
Q 018784          268 GHHGPVHCVRFSPGGESYASGSED----GTIRIWQTN  300 (350)
Q Consensus       268 ~h~~~v~~l~~sp~~~~lasgs~D----g~v~vw~~~  300 (350)
                      . ...+.+++|+|++++|+....+    ..+++|+..
T Consensus       423 ~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~  458 (741)
T 2ecf_A          423 K-APGMHSASFARNASVYVDSWSNNSTPPQIELFRAN  458 (741)
T ss_dssp             C-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred             c-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence            5 6678999999999988755433    468888864

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.91  E-value=9.2e-22  Score=175.10  Aligned_cols=244  Identities=11%  Similarity=0.047  Sum_probs=180.5

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeC-CCCeeEeeCCCCce-eeeccCccCCeEEEEECCCCcEEEEeeCCC---eEEEe
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASK-DSSPMLRNGETGDW-IGTFEGHKGAVWSCCLDANALFSASGSADF---TAKLW   88 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~-d~~v~iw~~~~~~~-~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg---~v~vW   88 (350)
                      .+..++ .++|+|   +|++|++++. ++.+.+||..+++. ...+..+..+..+++++|++.+++++..++   .|++|
T Consensus        38 ~~~~~~-~~~~s~---dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~  113 (331)
T 3u4y_A           38 LGYDFV-DTAITS---DCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSY  113 (331)
T ss_dssp             CCCCEE-EEEECS---SSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEE
T ss_pred             ccCCcc-eEEEcC---CCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEE
Confidence            445556 888886   9986655555 88999999999988 777887777776699999999988655553   99999


Q ss_pred             eCCCCCeeeeeeccccEeEEEEcCCCCeEEEe-eCCCe-EEEEECCCCCCCC---eeecCCCCcEEEEEEeCCCCcEEEE
Q 018784           89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTG-GFEKI-LRIFDLNRPDAPP---REVGNSSGSIRTVAWLHSDQTILSS  163 (350)
Q Consensus        89 d~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg-~~d~~-v~vwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~s  163 (350)
                      |+.+++.+..+.....+.+++|+|++++++++ ..++. |.+|++.......   .........+..++|+++++.++++
T Consensus       114 d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~  193 (331)
T 3u4y_A          114 SFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVA  193 (331)
T ss_dssp             ETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEE
T ss_pred             ECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEE
Confidence            99988887777777778999999999866554 55577 9999987533221   1112334457889998877668888


Q ss_pred             EeCCCeEEEEECCCCce---eEeecCCCCeEEEEEecCCcEEEEEc--CCcEEEEECCCcce--eeeeecC----CCC--
Q 018784          164 CTDSGGVRLWDARSGKI---VQTLETKSPVTSAEVSRDGRYITTAD--GSSVKFWDANHFGL--VKGYNMP----CNT--  230 (350)
Q Consensus       164 ~~~dg~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~vwd~~~~~~--~~~~~~~----~~~--  230 (350)
                      +..+++|.+||+++++.   +..+.....+..++|+|+|+++..+.  ++.|.+||+.+.+.  +..+...    ...  
T Consensus       194 ~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  273 (331)
T 3u4y_A          194 NLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLF  273 (331)
T ss_dssp             ETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGT
T ss_pred             eCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcc
Confidence            88889999999999988   77777777788899999999765543  46799999988766  3322211    111  


Q ss_pred             --ceeEecCCCCcEEEEecCCCeEEEEEcccCe
Q 018784          231 --ESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (350)
Q Consensus       231 --~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~  261 (350)
                        ..+.+.++...+++++..++.|.+||+.+..
T Consensus       274 ~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          274 GANQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             TCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             cccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence              1246666533455666777899999997644

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=1.7e-22  Score=198.33  Aligned_cols=277  Identities=11%  Similarity=0.080  Sum_probs=189.9

Q ss_pred             CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC----
Q 018784           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT----   92 (350)
Q Consensus        17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~----   92 (350)
                      .+|.+++|+|   |+ .++.+ .|+++++||..+++.. .+..|...+..++|+|+|+.++. +.|+.|++||+.+    
T Consensus        82 ~~v~~~~~sp---d~-~~~~~-~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~  154 (706)
T 2z3z_A           82 FPSFRTLDAG---RG-LVVLF-TQGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEG  154 (706)
T ss_dssp             CCCEEEEETT---TT-EEEEE-ETTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSC
T ss_pred             cCceeEEECC---CC-eEEEE-ECCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCccccc
Confidence            5789999886   84 44444 3599999999888765 44556777888999999999988 4789999999988    


Q ss_pred             -CCeeeeee-cccc--------------EeEEEEcCCCCeEEEee---------------------------------CC
Q 018784           93 -GDEKHSFE-HKHI--------------VRACAFSEDTHLLLTGG---------------------------------FE  123 (350)
Q Consensus        93 -~~~~~~~~-h~~~--------------V~~~~~~~~~~~l~sg~---------------------------------~d  123 (350)
                       ++...... +...              +.+++|+|||++|++++                                 .+
T Consensus       155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~  234 (706)
T 2z3z_A          155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH  234 (706)
T ss_dssp             CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred             CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence             76554332 2222              48899999999999987                                 44


Q ss_pred             CeEEEEECCCCCCCCeee-cCCCCcEEEEEEeCCCCcEEEEEeCCC-----eEEEEECCCCceeEeec---CC---CCeE
Q 018784          124 KILRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSCTDSG-----GVRLWDARSGKIVQTLE---TK---SPVT  191 (350)
Q Consensus       124 ~~v~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~s~~~dg-----~i~iwd~~~~~~~~~~~---~~---~~v~  191 (350)
                      ..|.+||+.++....... ..+...+..++|++++..++++ +.++     +|++||+.+++....+.   ..   ..+.
T Consensus       235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~-~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~  313 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVA-EVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLH  313 (706)
T ss_dssp             EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEE-EECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCS
T ss_pred             eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEE-EeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccC
Confidence            679999997654321111 2355678899999765555544 3443     89999999984333332   11   1245


Q ss_pred             EEEEec--CCcEEEEEc-CCcEEEEECC-CcceeeeeecCCCCc-e-eEecCCCCcEEEEecCCC----eEEEEEcccCe
Q 018784          192 SAEVSR--DGRYITTAD-GSSVKFWDAN-HFGLVKGYNMPCNTE-S-ASLEPKLGNIFIAGGEDM----WVHVFDFHTGE  261 (350)
Q Consensus       192 ~~~~~~--~~~~l~~~~-~~~i~vwd~~-~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~sg~~d~----~i~v~d~~~~~  261 (350)
                      .+.|+|  +|++++++. ++.+++|+.. +.+.++.+....... . ..+.+....++++++.++    .|+.||+.+++
T Consensus       314 ~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          314 PLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             CCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             CceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence            689999  999887664 6778888765 444444444332222 2 456664334555666555    67777777665


Q ss_pred             eEEeecCCCcCEEEEEEcCCCCEEEEecCC----CcEEEecCCCCC
Q 018784          262 QIGCNKGHHGPVHCVRFSPGGESYASGSED----GTIRIWQTNPPN  303 (350)
Q Consensus       262 ~~~~~~~h~~~v~~l~~sp~~~~lasgs~D----g~v~vw~~~~~~  303 (350)
                       ...+ .|...+.+++|+|++++++..+.+    +.|++||+...+
T Consensus       394 -~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          394 -TKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             -CEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             -ceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence             3333 367779999999999988765443    569999986554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=1.1e-21  Score=174.92  Aligned_cols=264  Identities=14%  Similarity=0.132  Sum_probs=181.4

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCC-CCeeEeeCC--CCc--eeeeccCccCCeEEEEECCCCcEEEEee-CCCeEE
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKD-SSPMLRNGE--TGD--WIGTFEGHKGAVWSCCLDANALFSASGS-ADFTAK   86 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d-~~v~iw~~~--~~~--~~~~l~gH~~~V~~v~~~~~~~~l~s~s-~Dg~v~   86 (350)
                      ..|...+.+++|+|   +|++|++++.+ +.+++|++.  +++  .+..+..+. .+..++|++++.+++.++ .++.|.
T Consensus        34 ~~~~~~~~~~~~sp---dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~  109 (343)
T 1ri6_A           34 VDVPGQVQPMVVSP---DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVS  109 (343)
T ss_dssp             EECSSCCCCEEECT---TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEE
T ss_pred             EecCCCCceEEECC---CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEE
Confidence            35777889998886   99988888886 899999987  555  344555544 778899999999776555 589999


Q ss_pred             EeeCC---CCCeeeeeeccccEeEEEEcCCCCeEEEee-CCCeEEEEECCC-CCCCC----eeecCCCCcEEEEEEeCCC
Q 018784           87 LWDAL---TGDEKHSFEHKHIVRACAFSEDTHLLLTGG-FEKILRIFDLNR-PDAPP----REVGNSSGSIRTVAWLHSD  157 (350)
Q Consensus        87 vWd~~---~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~-~d~~v~vwd~~~-~~~~~----~~~~~~~~~v~~~~~~~~~  157 (350)
                      +||+.   +......+.....+.+++|+|+++++++++ .++.|.+||+.. +....    .........+..++|.+.+
T Consensus       110 ~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg  189 (343)
T 1ri6_A          110 VTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE  189 (343)
T ss_dssp             EEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred             EEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCC
Confidence            99984   333444444555689999999999888777 899999999975 32211    1122234567889998776


Q ss_pred             CcEEEEEeCCCeEEEEECCC--Cce--eEeec---C----CCCeEEEEEecCCcEEE-EE-cCCcEEEEECC----Ccce
Q 018784          158 QTILSSCTDSGGVRLWDARS--GKI--VQTLE---T----KSPVTSAEVSRDGRYIT-TA-DGSSVKFWDAN----HFGL  220 (350)
Q Consensus       158 ~~~~~s~~~dg~i~iwd~~~--~~~--~~~~~---~----~~~v~~~~~~~~~~~l~-~~-~~~~i~vwd~~----~~~~  220 (350)
                      ..+++++..++.|.+||+..  ++.  ...+.   .    ...+..++|+|++++++ +. .++.|.+||+.    +...
T Consensus       190 ~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~  269 (343)
T 1ri6_A          190 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK  269 (343)
T ss_dssp             SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred             CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEE
Confidence            66777777889999999953  432  22222   1    23466899999998765 44 46899999997    3344


Q ss_pred             eeeeecCCCCceeEecCCCCcEEEEec-CCCeEEEEEcc--cCee--EEeecCCCcCEEEEEEcCCC
Q 018784          221 VKGYNMPCNTESASLEPKLGNIFIAGG-EDMWVHVFDFH--TGEQ--IGCNKGHHGPVHCVRFSPGG  282 (350)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~sg~-~d~~i~v~d~~--~~~~--~~~~~~h~~~v~~l~~sp~~  282 (350)
                      +..+........+.+.+. +++|++++ .++.|.+|++.  +++.  +..+.. .....+++|.|+.
T Consensus       270 ~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~-g~~p~~i~~~~~~  334 (343)
T 1ri6_A          270 EGFQPTETQPRGFNVDHS-GKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV-GQGPMWVVVNAHE  334 (343)
T ss_dssp             EEEEECSSSCCCEEECTT-SSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC-SSSCCEEEEEEEC
T ss_pred             eeeecCCCccceEEECCC-CCEEEEecCCCCeEEEEEEcCCCceeeEcccccc-CCCCeeEEEEccc
Confidence            444444444556667664 56555555 78999999654  5543  333332 2345677777654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.91  E-value=3.9e-22  Score=178.37  Aligned_cols=262  Identities=8%  Similarity=0.005  Sum_probs=182.3

Q ss_pred             CCccEEEEEeCCCCeeEeeCCCCceeeeccCcc-CCeEEEEECCCCcE-EEEeeCCCeEEEeeCCCCCeeeeeec-----
Q 018784           29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHK-GAVWSCCLDANALF-SASGSADFTAKLWDALTGDEKHSFEH-----  101 (350)
Q Consensus        29 ~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~-~~V~~v~~~~~~~~-l~s~s~Dg~v~vWd~~~~~~~~~~~h-----  101 (350)
                      +++.++++++.+++|++||..+++.+..+..+. ..+..+++++++++ ++++..++.|.+||+.+++....+..     
T Consensus         9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~   88 (349)
T 1jmx_B            9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG   88 (349)
T ss_dssp             TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccc
Confidence            488899999999999999999999988887553 25678999999975 45667899999999998877665543     


Q ss_pred             --cccEeEEEEcCCCCeEEEeeCC------------CeEEEEECCCCCCCC-eeecCCCCcEEEEEEeCCCCcEEEEEeC
Q 018784          102 --KHIVRACAFSEDTHLLLTGGFE------------KILRIFDLNRPDAPP-REVGNSSGSIRTVAWLHSDQTILSSCTD  166 (350)
Q Consensus       102 --~~~V~~~~~~~~~~~l~sg~~d------------~~v~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~s~~~  166 (350)
                        ...+..++|+|++++|++++.+            +.|.+||+.++.... .....+...+.+++|++++. +++ ++.
T Consensus        89 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~-~~~  166 (349)
T 1jmx_B           89 EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYV-AGP  166 (349)
T ss_dssp             EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEE-ESS
T ss_pred             cccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEE-ccC
Confidence              2237889999999999998865            899999987532211 11122334577888887665 555 433


Q ss_pred             CCeEEEEECCCCceeEeecCCC-------------------------CeEEEEEecCCcE-----------E-EEEcCCc
Q 018784          167 SGGVRLWDARSGKIVQTLETKS-------------------------PVTSAEVSRDGRY-----------I-TTADGSS  209 (350)
Q Consensus       167 dg~i~iwd~~~~~~~~~~~~~~-------------------------~v~~~~~~~~~~~-----------l-~~~~~~~  209 (350)
                        .|.+||+.+++.+..+....                         ....+.+++++..           + .-...+.
T Consensus       167 --~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  244 (349)
T 1jmx_B          167 --DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK  244 (349)
T ss_dssp             --SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC
T ss_pred             --cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCc
Confidence              49999999998877665432                         2233555544311           1 1112344


Q ss_pred             EEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEec
Q 018784          210 VKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS  289 (350)
Q Consensus       210 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs  289 (350)
                      +++|+...        .........+.+.++++++++  ++.|++||+.+++.+..+... ..+.+++|+|++++|++++
T Consensus       245 ~~~~~~~~--------~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~  313 (349)
T 1jmx_B          245 THTQEFAD--------LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGG  313 (349)
T ss_dssp             EEEEEEEE--------CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEES
T ss_pred             EEeccccc--------CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEec
Confidence            55554321        112233455555256777776  889999999999887766533 3467999999999888888


Q ss_pred             CCCcEEEecCCCCCcc
Q 018784          290 EDGTIRIWQTNPPNHE  305 (350)
Q Consensus       290 ~Dg~v~vw~~~~~~~~  305 (350)
                      .++.|++||+...+..
T Consensus       314 ~~~~v~v~d~~~~~~~  329 (349)
T 1jmx_B          314 TFNDLAVFNPDTLEKV  329 (349)
T ss_dssp             BSSEEEEEETTTTEEE
T ss_pred             CCCeEEEEecccccee
Confidence            8999999998765443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.91  E-value=2.7e-21  Score=173.44  Aligned_cols=260  Identities=11%  Similarity=0.093  Sum_probs=174.5

Q ss_pred             CCCCeeEee--CCCCceee-eccCccCCeEEEEECCCCcEEEEeeC--CCeEEEeeCCCCCee--ee-eeccccEeEEEE
Q 018784           39 KDSSPMLRN--GETGDWIG-TFEGHKGAVWSCCLDANALFSASGSA--DFTAKLWDALTGDEK--HS-FEHKHIVRACAF  110 (350)
Q Consensus        39 ~d~~v~iw~--~~~~~~~~-~l~gH~~~V~~v~~~~~~~~l~s~s~--Dg~v~vWd~~~~~~~--~~-~~h~~~V~~~~~  110 (350)
                      .++.+.+|.  .++++... ....+......++|+|++++++++..  ++.|++|++.++...  .. ..+...+..++|
T Consensus        14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~   93 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV   93 (347)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred             CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence            345566655  45666543 33445566778999999995444432  799999999766532  22 236677899999


Q ss_pred             cCCCCeEEEee-CCCeEEEEECCCCCCCC--eeecC---------CCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECC-C
Q 018784          111 SEDTHLLLTGG-FEKILRIFDLNRPDAPP--REVGN---------SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR-S  177 (350)
Q Consensus       111 ~~~~~~l~sg~-~d~~v~vwd~~~~~~~~--~~~~~---------~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~-~  177 (350)
                      +|++++|++++ .++.|.+|++.......  .....         ....+..++|++++. ++++...++.|++||+. +
T Consensus        94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~  172 (347)
T 3hfq_A           94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDA  172 (347)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTT
T ss_pred             CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCC
Confidence            99999888887 68999999986322111  11111         123477899987666 88888888999999998 5


Q ss_pred             CceeE--ee--cCCCCeEEEEEecCCcEEEEE--cCCcEEEEECCC--cce--eeeeec-CC------CCceeEecCCCC
Q 018784          178 GKIVQ--TL--ETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANH--FGL--VKGYNM-PC------NTESASLEPKLG  240 (350)
Q Consensus       178 ~~~~~--~~--~~~~~v~~~~~~~~~~~l~~~--~~~~i~vwd~~~--~~~--~~~~~~-~~------~~~~~~~~~~~~  240 (350)
                      ++...  .+  ........++|+|+|++++.+  .++.|++|++..  ...  +..... +.      ....+.+.+ ++
T Consensus       173 g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG  251 (347)
T 3hfq_A          173 GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH-DG  251 (347)
T ss_dssp             SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT-TS
T ss_pred             CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC-CC
Confidence            54322  11  223467789999999965543  357899998764  332  222221 11      123355666 46


Q ss_pred             cE-EEEecCCCeEEEEEccc-C--eeEEeecCCCcCEEEEEEcCCCCEEEEecC-CCcEEEecCC
Q 018784          241 NI-FIAGGEDMWVHVFDFHT-G--EQIGCNKGHHGPVHCVRFSPGGESYASGSE-DGTIRIWQTN  300 (350)
Q Consensus       241 ~~-l~sg~~d~~i~v~d~~~-~--~~~~~~~~h~~~v~~l~~sp~~~~lasgs~-Dg~v~vw~~~  300 (350)
                      ++ ++++..++.|.+|++.. +  +.+..+..+...+..++|+|++++|++++. ++.|.+|+++
T Consensus       252 ~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          252 HFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             CEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            64 46777799999999963 3  445556666777899999999998877665 5899999664

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=8e-22  Score=193.55  Aligned_cols=265  Identities=15%  Similarity=0.078  Sum_probs=181.8

Q ss_pred             ccEEEEEeCCCCeeEeeCCCCcee-eeccCcc-----------------CCeEEEEECCCCcEEEEeeCCCeEEEeeCCC
Q 018784           31 GFFLVSASKDSSPMLRNGETGDWI-GTFEGHK-----------------GAVWSCCLDANALFSASGSADFTAKLWDALT   92 (350)
Q Consensus        31 g~~lasgs~d~~v~iw~~~~~~~~-~~l~gH~-----------------~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~   92 (350)
                      |..+++++.|+ | +||..+++.+ ..+..|.                 ..|.+++|+|++.++++  .|+.|++||+.+
T Consensus        35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~--~~~~i~~~d~~~  110 (706)
T 2z3z_A           35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLF--TQGGLVGFDMLA  110 (706)
T ss_dssp             TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEE--ETTEEEEEETTT
T ss_pred             CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEE--ECCEEEEEECCC
Confidence            44566777788 8 9999999873 4444443                 46999999999545554  469999999988


Q ss_pred             CCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCC-----CCCCCeeecCCCCc--------------EEEEEE
Q 018784           93 GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR-----PDAPPREVGNSSGS--------------IRTVAW  153 (350)
Q Consensus        93 ~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~-----~~~~~~~~~~~~~~--------------v~~~~~  153 (350)
                      ++......+...+.+++|+|+|+.|+.+ .|+.|++||+.+     +... .....+...              +..+.|
T Consensus       111 ~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~-~~~~~~~~~~~~g~~~~~ee~~~~~~~~~  188 (706)
T 2z3z_A          111 RKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAI-AVTIDGTETLVYGQAVHQREFGIEKGTFW  188 (706)
T ss_dssp             TEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCE-ESCSCCBTTEEESSCCGGGCTTCCCSEEE
T ss_pred             CceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcE-EeccCCCCCeEcccchhhhhcCCCceEEE
Confidence            8766666677788999999999999885 689999999986     4332 111222222              478889


Q ss_pred             eCCCCcEEEEEe--------------------------------CCCeEEEEECCCCceeEeec---CCCCeEEEEEecC
Q 018784          154 LHSDQTILSSCT--------------------------------DSGGVRLWDARSGKIVQTLE---TKSPVTSAEVSRD  198 (350)
Q Consensus       154 ~~~~~~~~~s~~--------------------------------~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~  198 (350)
                      +|++..++++..                                .+..|++||+.+++......   ....+..+.|+||
T Consensus       189 SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd  268 (706)
T 2z3z_A          189 SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPD  268 (706)
T ss_dssp             CTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTT
T ss_pred             CCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECC
Confidence            876555554431                                34689999999887654432   2356889999999


Q ss_pred             CcEEEEE-cCC-----cEEEEECCCcceeeeee-cCCC-----CceeEecC-CCCcEEEEecCCCeEEEEEcc-cCeeEE
Q 018784          199 GRYITTA-DGS-----SVKFWDANHFGLVKGYN-MPCN-----TESASLEP-KLGNIFIAGGEDMWVHVFDFH-TGEQIG  264 (350)
Q Consensus       199 ~~~l~~~-~~~-----~i~vwd~~~~~~~~~~~-~~~~-----~~~~~~~~-~~~~~l~sg~~d~~i~v~d~~-~~~~~~  264 (350)
                      |++|+.+ .++     .|++||+.++...+.+. ....     ...+.+.+ .+++++++++.|+.+++|++. ++..+.
T Consensus       269 g~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~  348 (706)
T 2z3z_A          269 ENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIR  348 (706)
T ss_dssp             SSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEE
T ss_pred             CCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEE
Confidence            9977653 333     79999998873332221 1111     12345655 157889999999999999887 677777


Q ss_pred             eecCCCcCEEE-EEEcCCCCEEEE-ecCCC----cEEEecCCC
Q 018784          265 CNKGHHGPVHC-VRFSPGGESYAS-GSEDG----TIRIWQTNP  301 (350)
Q Consensus       265 ~~~~h~~~v~~-l~~sp~~~~las-gs~Dg----~v~vw~~~~  301 (350)
                      .+..|...+.. ++|+|+++.|+. ++.++    .|+.|+...
T Consensus       349 ~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~  391 (706)
T 2z3z_A          349 QVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG  391 (706)
T ss_dssp             ECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred             ecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence            88888888877 899999987754 44554    566666544

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.91  E-value=1.3e-21  Score=200.18  Aligned_cols=276  Identities=13%  Similarity=0.006  Sum_probs=210.2

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC-CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~-~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~   90 (350)
                      +.+|...+.++.|++   + .++++++.|++++||.... +.....+..|. .+...+|+|+++.++.+ .++.|.+||+
T Consensus       199 l~~~~~~v~~~~~s~---d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~  272 (1045)
T 1k32_A          199 IVDMSTHVSSPVIVG---H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNP  272 (1045)
T ss_dssp             EECCSSCCEEEEEET---T-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECT
T ss_pred             CcCCCCcccceEEeC---C-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecC
Confidence            378999999999985   6 7778888999999998643 44556677665 45677999999988877 5999999998


Q ss_pred             CCCCeeeeee------------ccccEeEEEEc-CCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCC-cEEEEEEeCC
Q 018784           91 LTGDEKHSFE------------HKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG-SIRTVAWLHS  156 (350)
Q Consensus        91 ~~~~~~~~~~------------h~~~V~~~~~~-~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~~  156 (350)
                      ..... ..+.            |...+.+++|+ |+|+.|++++ ++.+.+|++..+.  ......+.. .+..++|+  
T Consensus       273 ~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~s--  346 (1045)
T 1k32_A          273 DTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY--VLKVPEPLRIRYVRRGGD--  346 (1045)
T ss_dssp             TTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB--EEECSCCSCEEEEEECSS--
T ss_pred             CceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc--eEEccCCCcceEEeeeEc--
Confidence            44332 2332            33468999999 9999999887 7899999987543  222344555 78889888  


Q ss_pred             CCcEEEEEeCCCeEE-EEECCCCceeEeecCCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCC-Ccee
Q 018784          157 DQTILSSCTDSGGVR-LWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-TESA  233 (350)
Q Consensus       157 ~~~~~~s~~~dg~i~-iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~-~~~~  233 (350)
                      ++..++.+++++.+. +||+.+++......+...+..++|+|+|++|+.+ .++.|++||+.++........+.. ....
T Consensus       347 dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~  426 (1045)
T 1k32_A          347 TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF  426 (1045)
T ss_dssp             SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE
T ss_pred             CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccce
Confidence            555566666788888 9999887654444344678999999999988654 567999999998776655533322 3456


Q ss_pred             EecCCCCcEEEEecCC----------CeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784          234 SLEPKLGNIFIAGGED----------MWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       234 ~~~~~~~~~l~sg~~d----------~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~  301 (350)
                      .+.| ++++|++++.+          +.|++||+.+++ +..+..|...+.+++|+|+|++|+.++.++...+|+...
T Consensus       427 ~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~  502 (1045)
T 1k32_A          427 TISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV  502 (1045)
T ss_dssp             EECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             EECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence            6666 57888777654          489999999887 667788888899999999999999999999888888653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=5.6e-21  Score=171.24  Aligned_cols=241  Identities=12%  Similarity=0.118  Sum_probs=180.8

Q ss_pred             cCCeEEEEECCCCcEEEEeeC-------CCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEE-EeeCCCeEEEEECC
Q 018784           61 KGAVWSCCLDANALFSASGSA-------DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL-TGGFEKILRIFDLN  132 (350)
Q Consensus        61 ~~~V~~v~~~~~~~~l~s~s~-------Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-sg~~d~~v~vwd~~  132 (350)
                      ...+..+++++++.+++.++.       ++.|.+||..+++....+.....+..++|+|++++++ +...++.|.+||+.
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            356788999999987777663       6789999999998888877767788999999999555 55668999999998


Q ss_pred             CCCCCCeeecCCCC--------cEEEEEEeCCCCcEEEEE-eCCCeEEEEECCCCceeEeec-CCCCeEEEEEecCCcEE
Q 018784          133 RPDAPPREVGNSSG--------SIRTVAWLHSDQTILSSC-TDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYI  202 (350)
Q Consensus       133 ~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~s~-~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l  202 (350)
                      +++...........        .+..++|+++++.+++++ +.++.|.+||+++++.+..+. ....+..+.++|+++++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l  199 (353)
T 3vgz_A          120 TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRL  199 (353)
T ss_dssp             TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEE
T ss_pred             CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEE
Confidence            66543222221111        267899988777677666 457899999999999988887 44557889999999876


Q ss_pred             EEE-cCCcEEEEECCCcceeeeeecCCC-----CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEE
Q 018784          203 TTA-DGSSVKFWDANHFGLVKGYNMPCN-----TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCV  276 (350)
Q Consensus       203 ~~~-~~~~i~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l  276 (350)
                      +.+ .++.|.+||+.+.+....+.....     ...+.+.+....++++...++.|.+||+.+++.+..+.....  ..+
T Consensus       200 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~  277 (353)
T 3vgz_A          200 YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LAV  277 (353)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CCE
T ss_pred             EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ceE
Confidence            554 578999999999888776665221     223566665444566666679999999999988777664332  569


Q ss_pred             EEcCCCCE-EEEecCCCcEEEecCCCCC
Q 018784          277 RFSPGGES-YASGSEDGTIRIWQTNPPN  303 (350)
Q Consensus       277 ~~sp~~~~-lasgs~Dg~v~vw~~~~~~  303 (350)
                      +|+|++++ +++...++.|.+||....+
T Consensus       278 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~  305 (353)
T 3vgz_A          278 LFNPARNEAYVTHRQAGKVSVIDAKSYK  305 (353)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred             EECCCCCEEEEEECCCCeEEEEECCCCe
Confidence            99999985 4566679999999986544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=5.3e-22  Score=190.70  Aligned_cols=266  Identities=13%  Similarity=0.067  Sum_probs=185.6

Q ss_pred             cCCceeEEEecccCCCccEEEEEeC-CCCeeEeeCCCCceeeeccCcc-CCeEEEEECCCCcEEEEeeC---CCeEEEee
Q 018784           15 HSRPVVDLFYSPITPDGFFLVSASK-DSSPMLRNGETGDWIGTFEGHK-GAVWSCCLDANALFSASGSA---DFTAKLWD   89 (350)
Q Consensus        15 H~~~v~~~~~~~~s~dg~~lasgs~-d~~v~iw~~~~~~~~~~l~gH~-~~V~~v~~~~~~~~l~s~s~---Dg~v~vWd   89 (350)
                      +..+|++++|+|   ||+.||.++. |++++||++.+++.. .+..|. ..|..++|+|+ +++++++.   +...++|.
T Consensus        20 ~~~~~~~~~~~~---DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~   94 (582)
T 3o4h_A           20 IAVEKYSLQGVV---DGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK   94 (582)
T ss_dssp             HHSCEEEEEEEE---TTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE
T ss_pred             hccchheeecCC---CCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEE
Confidence            466899999997   9999999887 999999998766665 455554 68999999999 88887765   56667765


Q ss_pred             CCC---CCeeeeeeccccEeEEEEcCCCC--eEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEE
Q 018784           90 ALT---GDEKHSFEHKHIVRACAFSEDTH--LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (350)
Q Consensus        90 ~~~---~~~~~~~~h~~~V~~~~~~~~~~--~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~  164 (350)
                      ...   +... .+.....+...+|+|+++  .+++++.++. .+||+.++... .... +..  .+++|+|++ +.++++
T Consensus        95 ~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~-~l~~-~~~--~~~~~spDG-~~la~~  167 (582)
T 3o4h_A           95 VNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGLR-ELAR-LPG--FGFVSDIRG-DLIAGL  167 (582)
T ss_dssp             EETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEEE-EEEE-ESS--CEEEEEEET-TEEEEE
T ss_pred             EeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcEE-Eeec-CCC--ceEEECCCC-CEEEEE
Confidence            433   2222 333223344667888775  3444555554 59999765322 1222 222  678888654 455555


Q ss_pred             eCC----CeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEc-CC--cEEEEECCCcceeeeeecCCC-CceeE--
Q 018784          165 TDS----GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-GS--SVKFWDANHFGLVKGYNMPCN-TESAS--  234 (350)
Q Consensus       165 ~~d----g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~--~i~vwd~~~~~~~~~~~~~~~-~~~~~--  234 (350)
                      +.|    +.|++||+.+++......+...+..++|+|||++|++++ ++  .|++||+.+.... .+..... .....  
T Consensus       168 ~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~  246 (582)
T 3o4h_A          168 GFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPT  246 (582)
T ss_dssp             EEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCS
T ss_pred             EEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhc
Confidence            555    689999999888764444556789999999999888653 55  7999999887665 3222211 12233  


Q ss_pred             ------ecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCC---cEEEecCC
Q 018784          235 ------LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG---TIRIWQTN  300 (350)
Q Consensus       235 ------~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg---~v~vw~~~  300 (350)
                            +.++ +.++++++.|+.+++|++  |+...   .+.+.|.+++|+ +++++++++.+.   .|++|+..
T Consensus       247 ~~~~~~~spd-g~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          247 AITWLGYLPD-GRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             EEEEEEECTT-SCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             cccceeEcCC-CcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence                  5654 589999999999999999  66554   344678999999 999999888774   47777764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.89  E-value=3.3e-21  Score=167.66  Aligned_cols=223  Identities=13%  Similarity=0.144  Sum_probs=157.5

Q ss_pred             EEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCC-CCCCCeeecCCCCcEEEEEEeC
Q 018784           77 ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR-PDAPPREVGNSSGSIRTVAWLH  155 (350)
Q Consensus        77 ~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~  155 (350)
                      .+++.|++|++||+.+++......|...|.+++|+|++++|++++ ++.|.+||+.+ ..........+...+.+++|++
T Consensus        16 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp   94 (297)
T 2ojh_A           16 PGGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP   94 (297)
T ss_dssp             --CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred             CCCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence            356789999999999888777778999999999999999999876 78999999986 4432222223346678889987


Q ss_pred             CCCcEEEEEe--CCCe--EEEEECCCCceeEeecCCCCeEEEEEecCCcEEE-E-EcCCcEEEEECC--CcceeeeeecC
Q 018784          156 SDQTILSSCT--DSGG--VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT-T-ADGSSVKFWDAN--HFGLVKGYNMP  227 (350)
Q Consensus       156 ~~~~~~~s~~--~dg~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~-~~~~~i~vwd~~--~~~~~~~~~~~  227 (350)
                      ++. .++.+.  .++.  |..|++.+++ ...+.....+..+.|+|++++++ + ..++.+++|++.  +..........
T Consensus        95 dg~-~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  172 (297)
T 2ojh_A           95 DGA-LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGE  172 (297)
T ss_dssp             TSS-EEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSS
T ss_pred             CCC-EEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCC
Confidence            655 444555  3344  4445555554 44555555688899999998765 3 457888898853  33322222222


Q ss_pred             CCCceeEecCCCCcEEEE-ecCCCeEEEEEcc-cCeeEEeecCCCcCEEEEEEcCCCCEEEEecCC-----------CcE
Q 018784          228 CNTESASLEPKLGNIFIA-GGEDMWVHVFDFH-TGEQIGCNKGHHGPVHCVRFSPGGESYASGSED-----------GTI  294 (350)
Q Consensus       228 ~~~~~~~~~~~~~~~l~s-g~~d~~i~v~d~~-~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~D-----------g~v  294 (350)
                      .....+.+.+ ++++++. +..++.+++|++. .+..+..+..|...+.+++|+|++++|+.++.+           +.|
T Consensus       173 ~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l  251 (297)
T 2ojh_A          173 GRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRV  251 (297)
T ss_dssp             SCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEE
T ss_pred             CccccceECC-CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEE
Confidence            2334455665 4665554 4468999999987 566677788888889999999999999888776           569


Q ss_pred             EEecCCCCC
Q 018784          295 RIWQTNPPN  303 (350)
Q Consensus       295 ~vw~~~~~~  303 (350)
                      ++||+...+
T Consensus       252 ~~~d~~~~~  260 (297)
T 2ojh_A          252 QLMDMDGGN  260 (297)
T ss_dssp             EEEETTSCS
T ss_pred             EEEecCCCC
Confidence            999986543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.88  E-value=5.2e-21  Score=188.18  Aligned_cols=271  Identities=15%  Similarity=0.089  Sum_probs=182.4

Q ss_pred             eeccCC---ceeEEEecccCCCccEEEEEeCC---------CCeeEeeCCCCce--eeeccCccCCeEEEEECCCCcEEE
Q 018784           12 CHGHSR---PVVDLFYSPITPDGFFLVSASKD---------SSPMLRNGETGDW--IGTFEGHKGAVWSCCLDANALFSA   77 (350)
Q Consensus        12 ~~gH~~---~v~~~~~~~~s~dg~~lasgs~d---------~~v~iw~~~~~~~--~~~l~gH~~~V~~v~~~~~~~~l~   77 (350)
                      +.+|..   .|..++|+|   ||++||+++.+         +.+.+||+.+++.  +....+|...+..++|+|||+.+|
T Consensus        53 ~~~~~~~~~~v~~~~~Sp---Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la  129 (723)
T 1xfd_A           53 IEGKKIESLRAIRYEISP---DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLI  129 (723)
T ss_dssp             ECTTTTTTTTCSEEEECT---TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEE
T ss_pred             eccccccccccceEEECC---CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEE
Confidence            355654   489998886   99999999875         5677999998876  333455666788999999999999


Q ss_pred             EeeCCCeEEEeeCCCCCeeeeee-cccc------------------EeEEEEcCCCCeEEEeeCCC--------------
Q 018784           78 SGSADFTAKLWDALTGDEKHSFE-HKHI------------------VRACAFSEDTHLLLTGGFEK--------------  124 (350)
Q Consensus        78 s~s~Dg~v~vWd~~~~~~~~~~~-h~~~------------------V~~~~~~~~~~~l~sg~~d~--------------  124 (350)
                      .++. +.|++||+.+++...... +...                  +.+++|+|||+.|++++.|+              
T Consensus       130 ~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~  208 (723)
T 1xfd_A          130 FIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGS  208 (723)
T ss_dssp             EEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSS
T ss_pred             EEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCc
Confidence            8775 899999998887655443 2222                  27899999999999887553              


Q ss_pred             --------------------eEEEEECCCCCCCCeeecC-----CCCcEEEEEEeCCCCcEEEEEe----CCCeEEEEEC
Q 018784          125 --------------------ILRIFDLNRPDAPPREVGN-----SSGSIRTVAWLHSDQTILSSCT----DSGGVRLWDA  175 (350)
Q Consensus       125 --------------------~v~vwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~s~~----~dg~i~iwd~  175 (350)
                                          .|++||+.++........+     +...+..++|++++. ++++..    .+..|++||+
T Consensus       209 ~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~i~~~d~  287 (723)
T 1xfd_A          209 IYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK-VAVTWLNRAQNVSILTLCDA  287 (723)
T ss_dssp             SSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE-EEEEEEETTSCEEEEEEEET
T ss_pred             CCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCe-EEEEEEcCCCCeEEEEEEeC
Confidence                                7999999765532222111     256788999997655 554432    2357999999


Q ss_pred             CCCceeEeecC--CCCe----EEEEEecCCcEEEE--E-cCC------cEEEEE-CCCcc--eeeeeecCC-CCce-eEe
Q 018784          176 RSGKIVQTLET--KSPV----TSAEVSRDGRYITT--A-DGS------SVKFWD-ANHFG--LVKGYNMPC-NTES-ASL  235 (350)
Q Consensus       176 ~~~~~~~~~~~--~~~v----~~~~~~~~~~~l~~--~-~~~------~i~vwd-~~~~~--~~~~~~~~~-~~~~-~~~  235 (350)
                      .++++...+..  ...+    ..+.|+|||+.|+.  + .++      .|.+|| ..+..  +.+.+.... .... ..+
T Consensus       288 ~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~  367 (723)
T 1xfd_A          288 TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAY  367 (723)
T ss_dssp             TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEE
T ss_pred             CCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEE
Confidence            99887655432  2222    36889999985542  3 455      477777 33333  033332211 1122 356


Q ss_pred             cCCCCcEEE-EecCC--CeEEEEEcccC--eeEEeecC---CCcCEEEEEEcCCCCEEEEe
Q 018784          236 EPKLGNIFI-AGGED--MWVHVFDFHTG--EQIGCNKG---HHGPVHCVRFSPGGESYASG  288 (350)
Q Consensus       236 ~~~~~~~l~-sg~~d--~~i~v~d~~~~--~~~~~~~~---h~~~v~~l~~sp~~~~lasg  288 (350)
                      .++ ++.|+ ++..+  +.+++|++...  .....+..   |...+..++|+|++++|+..
T Consensus       368 spd-g~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~  427 (723)
T 1xfd_A          368 DEK-GNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK  427 (723)
T ss_dssp             ETT-TTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred             cCC-CCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence            654 66655 44444  78999998643  23344443   67778999999999987753

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=1.2e-20  Score=174.76  Aligned_cols=197  Identities=9%  Similarity=-0.012  Sum_probs=146.4

Q ss_pred             cCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC-----------ceee----eccCccCCeEEEEECCCCcEEE--
Q 018784           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-----------DWIG----TFEGHKGAVWSCCLDANALFSA--   77 (350)
Q Consensus        15 H~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~-----------~~~~----~l~gH~~~V~~v~~~~~~~~l~--   77 (350)
                      +...+..+++++   ++.++++++.|+ ++||+....           ....    ..-.|...|.+++|++++.+|+  
T Consensus        35 ~~~~~n~lavs~---~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~  110 (434)
T 2oit_A           35 PKERSSLLAVSN---KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSAC  110 (434)
T ss_dssp             CCSCCBCEEEET---TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEE
T ss_pred             CCCCccEEEEec---CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEE
Confidence            445678888876   788999999888 888764211           1110    0113567799999999999999  


Q ss_pred             --EeeCCCeEEEeeCCCC--------Ce---eeee-eccccEeEEEEcCC-CCeEEEeeCCCeEEEEECCCCCCCCeeec
Q 018784           78 --SGSADFTAKLWDALTG--------DE---KHSF-EHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPPREVG  142 (350)
Q Consensus        78 --s~s~Dg~v~vWd~~~~--------~~---~~~~-~h~~~V~~~~~~~~-~~~l~sg~~d~~v~vwd~~~~~~~~~~~~  142 (350)
                        +|+.|++|+|||+.+.        +.   ...+ .|...|.+++|+|+ +.+|++++.|++|++||+.+.... ....
T Consensus       111 ~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~-~~~~  189 (434)
T 2oit_A          111 MMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV-CATL  189 (434)
T ss_dssp             EEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE-EEEE
T ss_pred             EeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce-eecc
Confidence              8999999999998654        21   1222 38889999999998 889999999999999999865322 2234


Q ss_pred             CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC--------CCeEEEEEecCCcEEEEEc--CC----
Q 018784          143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK--------SPVTSAEVSRDGRYITTAD--GS----  208 (350)
Q Consensus       143 ~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~--~~----  208 (350)
                      .|...+.+++|++. +.++++|+.||+|++||++ ++....+..+        ..+.++.|++++.++++..  ++    
T Consensus       190 ~~~~~v~~v~wspd-g~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~  267 (434)
T 2oit_A          190 PSTVAVTSVCWSPK-GKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLET  267 (434)
T ss_dssp             CGGGCEEEEEECTT-SSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSS
T ss_pred             CCCCceeEEEEcCC-CCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCC
Confidence            46778999999875 6677788899999999998 5555544321        2688999999998885532  22    


Q ss_pred             --cEEEEECCCc
Q 018784          209 --SVKFWDANHF  218 (350)
Q Consensus       209 --~i~vwd~~~~  218 (350)
                        .+++||+++.
T Consensus       268 ~~~v~i~~l~~~  279 (434)
T 2oit_A          268 SPDVVMALLPKK  279 (434)
T ss_dssp             CCEEEEEECCCT
T ss_pred             CCceEEEEeccC
Confidence              3999999864

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.88  E-value=3.3e-19  Score=160.78  Aligned_cols=267  Identities=11%  Similarity=0.092  Sum_probs=176.0

Q ss_pred             CccEEEEEe----CCCCeeEeeC--CCCceeeeccCccCCeEEEEECCCCcEEEEeeCC----CeEEEeeCCC--CCee-
Q 018784           30 DGFFLVSAS----KDSSPMLRNG--ETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD----FTAKLWDALT--GDEK-   96 (350)
Q Consensus        30 dg~~lasgs----~d~~v~iw~~--~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D----g~v~vWd~~~--~~~~-   96 (350)
                      ...++..|+    .++.|.+|..  ++++.......|......++|+|+++++++++.+    +.|.+|++..  +... 
T Consensus        12 ~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~   91 (361)
T 3scy_A           12 SELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL   91 (361)
T ss_dssp             GEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE
T ss_pred             CceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE
Confidence            345566664    4567888865  5665533222266777789999999999988886    8999998765  3322 


Q ss_pred             -eeee-ccccEeEEEEcCCCCeEEEee-CCCeEEEEECCCCCCCCee---ec----------CCCCcEEEEEEeCCCCcE
Q 018784           97 -HSFE-HKHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPPRE---VG----------NSSGSIRTVAWLHSDQTI  160 (350)
Q Consensus        97 -~~~~-h~~~V~~~~~~~~~~~l~sg~-~d~~v~vwd~~~~~~~~~~---~~----------~~~~~v~~~~~~~~~~~~  160 (350)
                       .... +...+..+++  ++++|++++ .++.|.+|++.........   ..          .+...+.+++|++++..+
T Consensus        92 ~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l  169 (361)
T 3scy_A           92 LNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYL  169 (361)
T ss_dssp             EEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEE
T ss_pred             eeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEE
Confidence             2222 3456777777  777777665 6889999998643321111   00          112345788998776667


Q ss_pred             EEEEeCCCeEEEEECCCCc-------e-------eEeecCCCCeEEEEEecCCcEEEEE--cCCcEEEEECCCccee--e
Q 018784          161 LSSCTDSGGVRLWDARSGK-------I-------VQTLETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANHFGLV--K  222 (350)
Q Consensus       161 ~~s~~~dg~i~iwd~~~~~-------~-------~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~vwd~~~~~~~--~  222 (350)
                      ++++..++.|.+|++....       .       ............++|+|+|++++.+  .++.|.+||+.+....  .
T Consensus       170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~  249 (361)
T 3scy_A          170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQ  249 (361)
T ss_dssp             EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEE
T ss_pred             EEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeE
Confidence            7777778999999887543       1       2223345567889999999876544  3688999998765432  2


Q ss_pred             eeecC-C---CCceeEecCCCCcEEEE-ecC-CCeEEEEEcc--cCe--eEEeecCCCcCEEEEEEcCCCCEEEEec-CC
Q 018784          223 GYNMP-C---NTESASLEPKLGNIFIA-GGE-DMWVHVFDFH--TGE--QIGCNKGHHGPVHCVRFSPGGESYASGS-ED  291 (350)
Q Consensus       223 ~~~~~-~---~~~~~~~~~~~~~~l~s-g~~-d~~i~v~d~~--~~~--~~~~~~~h~~~v~~l~~sp~~~~lasgs-~D  291 (350)
                      ..... .   ....+.+.+ ++++|++ ... ++.|.+|++.  +++  .+..+.. ...+.+++|+|++++|++++ .+
T Consensus       250 ~~~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~  327 (361)
T 3scy_A          250 TVAADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDT  327 (361)
T ss_dssp             EEESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTT
T ss_pred             EEecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCC
Confidence            22211 1   122455665 4666644 444 5899999995  444  3434444 45688999999999887766 67


Q ss_pred             CcEEEecCC
Q 018784          292 GTIRIWQTN  300 (350)
Q Consensus       292 g~v~vw~~~  300 (350)
                      +.|.+|+++
T Consensus       328 ~~v~v~~~d  336 (361)
T 3scy_A          328 NVIQIFERD  336 (361)
T ss_dssp             TEEEEEEEC
T ss_pred             CCEEEEEEE
Confidence            999998665

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=2.5e-20  Score=165.69  Aligned_cols=241  Identities=17%  Similarity=0.131  Sum_probs=177.4

Q ss_pred             ceeEEEecccCCCccE-EEEEeCCCCeeEeeCCCCceeeeccC-c----cCCeEEEEECCCCcEEEEee-----------
Q 018784           18 PVVDLFYSPITPDGFF-LVSASKDSSPMLRNGETGDWIGTFEG-H----KGAVWSCCLDANALFSASGS-----------   80 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~-lasgs~d~~v~iw~~~~~~~~~~l~g-H----~~~V~~v~~~~~~~~l~s~s-----------   80 (350)
                      .+..++|+|   +|++ +++++.++.|.+||..+++.+..+.. +    ...+..+++++++.++++++           
T Consensus        35 ~~~~~~~s~---dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~  111 (337)
T 1pby_B           35 TPMVPMVAP---GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE  111 (337)
T ss_dssp             CCCCEEECT---TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CccceEEcC---CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEeccccccccccc
Confidence            477888886   8865 46667788999999999998876653 2    23567889999998888775           


Q ss_pred             -CCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCC-CCcEEEEEEeCCCC
Q 018784           81 -ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS-SGSIRTVAWLHSDQ  158 (350)
Q Consensus        81 -~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~  158 (350)
                       .++.|.+||+.+++....+.....+.+++|+|++++|+++  ++.|.+||+.+++......... ..   .+.|++++.
T Consensus       112 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~s~dg~  186 (337)
T 1pby_B          112 VQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEA---ETYAQPDVL  186 (337)
T ss_dssp             ECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTT---TTBCCCBCC
T ss_pred             ccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCC---CceeCCCcc
Confidence             6899999999888777777666678899999999988887  6889999997654322111111 11   124455444


Q ss_pred             cEEEEEeCCC-----------------------eEEEEECCCCceeEeec---CCCCeEEEEEecCCcEEEEEcCCcEEE
Q 018784          159 TILSSCTDSG-----------------------GVRLWDARSGKIVQTLE---TKSPVTSAEVSRDGRYITTADGSSVKF  212 (350)
Q Consensus       159 ~~~~s~~~dg-----------------------~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~i~v  212 (350)
                      .+++++..++                       .|.+||+++++.. .+.   ....+..++|+|++++++++ ++.|.+
T Consensus       187 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~  264 (337)
T 1pby_B          187 AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA-YNVLES  264 (337)
T ss_dssp             CCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE-ESEEEE
T ss_pred             EEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe-CCeEEE
Confidence            4444443333                       4789999998764 222   23467789999999988777 689999


Q ss_pred             EECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCC
Q 018784          213 WDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGH  269 (350)
Q Consensus       213 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h  269 (350)
                      ||+.+.+.+..+........+.+.+ +++++++++.++.|++||+.+++.+..+..+
T Consensus       265 ~d~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          265 FDLEKNASIKRVPLPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EETTTTEEEEEEECSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             EECCCCcCcceecCCCceeeEEECC-CCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence            9999988877776665566677776 4677777788999999999999887766544

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.87  E-value=8.5e-21  Score=186.70  Aligned_cols=273  Identities=12%  Similarity=0.007  Sum_probs=183.4

Q ss_pred             EEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccC---CeEEEEECCCCcEEEEeeC---------CCeEEEe
Q 018784           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG---AVWSCCLDANALFSASGSA---------DFTAKLW   88 (350)
Q Consensus        21 ~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~---~V~~v~~~~~~~~l~s~s~---------Dg~v~vW   88 (350)
                      .+.|+|   ||.+++++ .|+++++||..+++....+.+|..   .|.+++|+|||++++.++.         |+.|++|
T Consensus        20 ~~~~s~---dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           20 FPNWIS---GQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             CCEESS---SSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             ccEECC---CCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence            556665   99776654 699999999999998877777755   4889999999999998876         7999999


Q ss_pred             eCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcE-----------------EEE
Q 018784           89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSI-----------------RTV  151 (350)
Q Consensus        89 d~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v-----------------~~~  151 (350)
                      |+.+++..........+..++|+|||+.|+.+. ++.|++|++.++.........+...+                 ..+
T Consensus        96 d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~  174 (719)
T 1z68_A           96 DLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL  174 (719)
T ss_dssp             ETTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred             ECCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence            998886521112235688999999999999885 78999999976543211111222212                 478


Q ss_pred             EEeCCCCcEEEEEeCCC---------------------------------eEEEEECCCCcee--Eee-------cCCCC
Q 018784          152 AWLHSDQTILSSCTDSG---------------------------------GVRLWDARSGKIV--QTL-------ETKSP  189 (350)
Q Consensus       152 ~~~~~~~~~~~s~~~dg---------------------------------~i~iwd~~~~~~~--~~~-------~~~~~  189 (350)
                      +|+|++..++.+..+++                                 +|++||+.+++..  ..+       .+...
T Consensus       175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  254 (719)
T 1z68_A          175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY  254 (719)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred             EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence            89876655554443321                                 7899999988653  122       13346


Q ss_pred             eEEEEEecCCcEEEEEc--C---CcEEEEE----CCCcceeeeee----cCCC-Cc-----eeEecCCCCc-EEE-EecC
Q 018784          190 VTSAEVSRDGRYITTAD--G---SSVKFWD----ANHFGLVKGYN----MPCN-TE-----SASLEPKLGN-IFI-AGGE  248 (350)
Q Consensus       190 v~~~~~~~~~~~l~~~~--~---~~i~vwd----~~~~~~~~~~~----~~~~-~~-----~~~~~~~~~~-~l~-sg~~  248 (350)
                      +..++|+||++++++..  +   ..|.+||    +.+++......    .+.. ..     ...+.++ ++ +++ ++..
T Consensus       255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd-g~~l~~~~~~~  333 (719)
T 1z68_A          255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD-AISYYKIFSDK  333 (719)
T ss_dssp             EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT-SSCEEEEEECT
T ss_pred             EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC-CCeEEEEEEcc
Confidence            78999999998876632  2   2488899    77765544331    2111 11     3456554 55 333 4545


Q ss_pred             CC--eEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecC-----CCcEEEecCCC
Q 018784          249 DM--WVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSE-----DGTIRIWQTNP  301 (350)
Q Consensus       249 d~--~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~-----Dg~v~vw~~~~  301 (350)
                      ++  .|.+||+.+++ ...+..+...+..+.++ +++.++..+.     ++.++||.++.
T Consensus       334 ~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          334 DGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             TSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred             CCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence            55  56777776665 44555566668888777 7776655444     48899998754

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.86  E-value=7.9e-21  Score=182.48  Aligned_cols=240  Identities=11%  Similarity=0.032  Sum_probs=171.1

Q ss_pred             eeeeccC-ccCCeEEEEECCCCcEEEEeeC-CCeEEEeeCCCCCeeeeeecc-ccEeEEEEcCCCCeEEEeeC---CCeE
Q 018784           53 WIGTFEG-HKGAVWSCCLDANALFSASGSA-DFTAKLWDALTGDEKHSFEHK-HIVRACAFSEDTHLLLTGGF---EKIL  126 (350)
Q Consensus        53 ~~~~l~g-H~~~V~~v~~~~~~~~l~s~s~-Dg~v~vWd~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~sg~~---d~~v  126 (350)
                      .++.++. +..+|+++++++||+.+|+++. ||+++||++.+++......+. ..+..++|+|+ +++++++.   +...
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~   90 (582)
T 3o4h_A           12 IVRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQH   90 (582)
T ss_dssp             HHHHHHHHHHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCE
T ss_pred             HHHHHHHHhccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcce
Confidence            3334443 3567999999999999998887 999999998666655555555 58999999999 77777765   5666


Q ss_pred             EEEECCC--CCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEE
Q 018784          127 RIFDLNR--PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT  204 (350)
Q Consensus       127 ~vwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  204 (350)
                      ++|.+..  ..... ...... .....+|+++++.++++.+.++.+.+||+.+++.........  .++.|+|||++++.
T Consensus        91 ~l~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~  166 (582)
T 3o4h_A           91 ALFKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAG  166 (582)
T ss_dssp             EEEEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEE
T ss_pred             EEEEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEE
Confidence            7765532  22222 222222 233557777666554444444556699999887655544433  78899999999874


Q ss_pred             E-cC----CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCC--eEEEEEcccCeeEEeecCCCcCEEEEE
Q 018784          205 A-DG----SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM--WVHVFDFHTGEQIGCNKGHHGPVHCVR  277 (350)
Q Consensus       205 ~-~~----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~--~i~v~d~~~~~~~~~~~~h~~~v~~l~  277 (350)
                      + .+    ..|++||+.+.....-...........++| +++.|+++..++  .|++||+.+++.. .+.+|...+..++
T Consensus       167 ~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~  244 (582)
T 3o4h_A          167 LGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISP-GMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYR  244 (582)
T ss_dssp             EEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHC
T ss_pred             EEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECC-CCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhh
Confidence            3 33    579999988766542222222234455665 688888888888  8999999998877 7778877777777


Q ss_pred             --------EcCCCCEEEEecCCCcEEEecC
Q 018784          278 --------FSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       278 --------~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                              |+|||.++++++.|+.++||++
T Consensus       245 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          245 PTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             hccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence                    9999988999999999999998

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=1.2e-20  Score=174.69  Aligned_cols=218  Identities=14%  Similarity=0.122  Sum_probs=151.6

Q ss_pred             CCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCC-----------C-----eeeeeecccc
Q 018784           41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG-----------D-----EKHSFEHKHI  104 (350)
Q Consensus        41 ~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~-----------~-----~~~~~~h~~~  104 (350)
                      +++++|+.. ..      .+...+..+++++++.++++++.|+ +++|+....           .     ....+.+...
T Consensus        23 ~~vri~~~~-~~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (434)
T 2oit_A           23 KKVRIFDSP-EE------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP   94 (434)
T ss_dssp             CEEECSCCC-SS------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred             eeEEecCCc-cc------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence            468888742 11      1334577889999999999999998 899864210           0     1123346677


Q ss_pred             EeEEEEcCCCCeEE----EeeCCCeEEEEECCCC-----CC--C---CeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784          105 VRACAFSEDTHLLL----TGGFEKILRIFDLNRP-----DA--P---PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (350)
Q Consensus       105 V~~~~~~~~~~~l~----sg~~d~~v~vwd~~~~-----~~--~---~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i  170 (350)
                      |.+++|+|++++|+    +|+.|++|++||+.+.     ..  +   ......|...|.+++|++.++.++++++.||+|
T Consensus        95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v  174 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI  174 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred             ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence            99999999999999    8999999999998643     11  1   122345788999999998778899999999999


Q ss_pred             EEEECCCCceeEeec-CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecC
Q 018784          171 RLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE  248 (350)
Q Consensus       171 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~  248 (350)
                      ++||++++..+.... +...+.+++|+|+|++|+++ .|+.|++||++ ......+..+..                   
T Consensus       175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~-------------------  234 (434)
T 2oit_A          175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPF-------------------  234 (434)
T ss_dssp             EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTT-------------------
T ss_pred             EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcc-------------------
Confidence            999999886654433 35678999999988766544 46777777765 222221111000                   


Q ss_pred             CCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEE-ecCCCc------EEEecCCCC
Q 018784          249 DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYAS-GSEDGT------IRIWQTNPP  302 (350)
Q Consensus       249 d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~las-gs~Dg~------v~vw~~~~~  302 (350)
                                      ....|...|.+++|++++.++++ .+.||.      +++|++...
T Consensus       235 ----------------~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          235 ----------------YESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             ----------------CCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             ----------------cCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence                            00124457899999999888754 444543      899998754

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.86  E-value=2.5e-19  Score=160.66  Aligned_cols=246  Identities=11%  Similarity=0.095  Sum_probs=166.0

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeC---CCCeeEeeCCCCc--eeeeccCccCCeEEEEECCCCcEEEEee-CCCeEE
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASK---DSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGS-ADFTAK   86 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~---d~~v~iw~~~~~~--~~~~l~gH~~~V~~v~~~~~~~~l~s~s-~Dg~v~   86 (350)
                      ..|...+..++|+|   ||+ |++++.   ++.|.+|++.+++  .+..+..|...+..++|+|+++++++++ .+++|+
T Consensus        36 ~~~~~~p~~~a~sp---dg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~  111 (347)
T 3hfq_A           36 LAATQNPTYLALSA---KDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAE  111 (347)
T ss_dssp             EEECSCCCCEEECT---TCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEE
T ss_pred             eeccCCcceEEEcc---CCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEE
Confidence            34556677788886   998 444443   6899999997765  4455566777888999999999888777 789999


Q ss_pred             EeeCCC-CCe--eeeeecc----------ccEeEEEEcCCCCeEEEeeCCCeEEEEECCC-CCCCCe--eecCCCCcEEE
Q 018784           87 LWDALT-GDE--KHSFEHK----------HIVRACAFSEDTHLLLTGGFEKILRIFDLNR-PDAPPR--EVGNSSGSIRT  150 (350)
Q Consensus        87 vWd~~~-~~~--~~~~~h~----------~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~-~~~~~~--~~~~~~~~v~~  150 (350)
                      +|++.. +..  +..+.+.          ..+.+++|+|+++++++...++.|.+|++.. +.....  ........+..
T Consensus       112 v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~  191 (347)
T 3hfq_A          112 VMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH  191 (347)
T ss_dssp             EEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred             EEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence            999853 332  2222221          2478899999999667777789999999973 221111  11222335778


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEECCC--Cce--eEeecC-C------CCeEEEEEecCCcEEE-EE-cCCcEEEEECCC
Q 018784          151 VAWLHSDQTILSSCTDSGGVRLWDARS--GKI--VQTLET-K------SPVTSAEVSRDGRYIT-TA-DGSSVKFWDANH  217 (350)
Q Consensus       151 ~~~~~~~~~~~~s~~~dg~i~iwd~~~--~~~--~~~~~~-~------~~v~~~~~~~~~~~l~-~~-~~~~i~vwd~~~  217 (350)
                      ++|++++..+++++..++.|.+|++..  ++.  +..+.. .      ..+..++|+|+|++|+ +. .++.|.+||+..
T Consensus       192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence            999877666777788889999999874  442  222221 1      3478899999999764 33 468899999873


Q ss_pred             c---ceeeeeecC-CCCceeEecCCCCcEEEEec-CCCeEEEEEc--ccCeeE
Q 018784          218 F---GLVKGYNMP-CNTESASLEPKLGNIFIAGG-EDMWVHVFDF--HTGEQI  263 (350)
Q Consensus       218 ~---~~~~~~~~~-~~~~~~~~~~~~~~~l~sg~-~d~~i~v~d~--~~~~~~  263 (350)
                      .   ..+..+... ..+..+.+.+ ++++|++++ .++.|.+|++  .+|+..
T Consensus       272 ~g~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          272 DGHLTLIQQISTEGDFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             GGCEEEEEEEECSSSCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             CCcEEEeEEEecCCCCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence            2   334444332 2345666766 466555554 5689999954  456554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.86  E-value=2e-19  Score=162.49  Aligned_cols=291  Identities=11%  Similarity=0.104  Sum_probs=194.4

Q ss_pred             CCccEEEEEe------CCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEee----------CCCeEEEeeCCC
Q 018784           29 PDGFFLVSAS------KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS----------ADFTAKLWDALT   92 (350)
Q Consensus        29 ~dg~~lasgs------~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s----------~Dg~v~vWd~~~   92 (350)
                      ++++++....      .|+++.+||..+++.+.++..+..+  .++++|++++++.+.          .+++|.+||..+
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t   90 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK   90 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence            3566555543      4789999999999999888877666  889999999888875          378899999998


Q ss_pred             CCeeeeee-------ccccEeEEEEcCCCCeEEEeeC--CCeEEEEECCCCCCCCee-ecCCCCcEEEEEEeCCCCcEEE
Q 018784           93 GDEKHSFE-------HKHIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPRE-VGNSSGSIRTVAWLHSDQTILS  162 (350)
Q Consensus        93 ~~~~~~~~-------h~~~V~~~~~~~~~~~l~sg~~--d~~v~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~  162 (350)
                      .+....+.       +...+..++|+|+|++|+++..  +++|.+||+.+.+.. .. .. .. ....+.+.+.+...++
T Consensus        91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~-~~~i~-~~-~~~~v~~~p~~~~~~~  167 (361)
T 2oiz_A           91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYV-EDVTA-AA-GCWSVIPQPNRPRSFM  167 (361)
T ss_dssp             CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEE-EEEGG-GT-TEEEEEECTTSSSEEE
T ss_pred             CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEE-EEEec-CC-CcceeEEcCCCCeeEE
Confidence            88776654       2245678999999999998864  689999999865332 22 22 11 1223455666656777


Q ss_pred             EEeCCCeEEEEECCC-CceeEee------cCCCCeEEEEEecCCcE-EEEEcCCcEEEEECCCcc--eeeeeec------
Q 018784          163 SCTDSGGVRLWDARS-GKIVQTL------ETKSPVTSAEVSRDGRY-ITTADGSSVKFWDANHFG--LVKGYNM------  226 (350)
Q Consensus       163 s~~~dg~i~iwd~~~-~~~~~~~------~~~~~v~~~~~~~~~~~-l~~~~~~~i~vwd~~~~~--~~~~~~~------  226 (350)
                      +.+.||++.+|+... ++.....      ........+.+.+++.. +..+.++.+.++|+....  .+..+..      
T Consensus       168 ~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~  247 (361)
T 2oiz_A          168 TICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDK  247 (361)
T ss_dssp             EEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHH
T ss_pred             EECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccc
Confidence            888899999999865 5544221      11111112233555543 445567789999986432  1222211      


Q ss_pred             -----CCCCceeEecCCCCcEEEEec----------CCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCC
Q 018784          227 -----PCNTESASLEPKLGNIFIAGG----------EDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSED  291 (350)
Q Consensus       227 -----~~~~~~~~~~~~~~~~l~sg~----------~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~D  291 (350)
                           +.......+.+..+.++++..          ..+.|.+||+.+++.+.++..+.  +++++|+|+|++|++++. 
T Consensus       248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-  324 (361)
T 2oiz_A          248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-  324 (361)
T ss_dssp             HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-
T ss_pred             ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-
Confidence                 111122455665455555543          13589999999999999988777  999999999999988887 


Q ss_pred             CcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccch
Q 018784          292 GTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGK  340 (350)
Q Consensus       292 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~  340 (350)
                      +.|.+||..+..+             ++......+...-.++.++|||+
T Consensus       325 ~~v~v~D~~t~~l-------------~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          325 GNVNVYDISQPEP-------------KLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             SCEEEEECSSSSC-------------EEEEEETTSCSSEEEEEECCCSC
T ss_pred             CeEEEEECCCCcc-------------eeeEEeccCCCCcEEEEecCCCC
Confidence            9999999865411             11111122233346778889886

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.85  E-value=3.3e-18  Score=154.19  Aligned_cols=259  Identities=13%  Similarity=0.108  Sum_probs=171.0

Q ss_pred             cCCceeEEEecccCCCccEEEEEeCC----CCeeEeeCCC--Cce--eeeccCccCCeEEEEECCCCcEEEEee-CCCeE
Q 018784           15 HSRPVVDLFYSPITPDGFFLVSASKD----SSPMLRNGET--GDW--IGTFEGHKGAVWSCCLDANALFSASGS-ADFTA   85 (350)
Q Consensus        15 H~~~v~~~~~~~~s~dg~~lasgs~d----~~v~iw~~~~--~~~--~~~l~gH~~~V~~v~~~~~~~~l~s~s-~Dg~v   85 (350)
                      |...+..++|+|   ||++|++++.+    +.+.+|+...  ++.  +..+..+......+++  ++.++++++ .+++|
T Consensus        48 ~~~~p~~l~~sp---dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v  122 (361)
T 3scy_A           48 EVANPSYLIPSA---DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSI  122 (361)
T ss_dssp             ECSCCCSEEECT---TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEE
T ss_pred             cCCCCceEEECC---CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEE
Confidence            666777788876   99999999886    7899998654  443  3344445556667777  676655554 68999


Q ss_pred             EEeeCCCCCeee----eeec-----------cccEeEEEEcCCCCeEEEee-CCCeEEEEECCCCCC----C-C------
Q 018784           86 KLWDALTGDEKH----SFEH-----------KHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDA----P-P------  138 (350)
Q Consensus        86 ~vWd~~~~~~~~----~~~h-----------~~~V~~~~~~~~~~~l~sg~-~d~~v~vwd~~~~~~----~-~------  138 (350)
                      .+|++.....+.    ...+           ...+.+++|+|++++|++++ .++.|++|++.....    . .      
T Consensus       123 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~  202 (361)
T 3scy_A          123 TVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTP  202 (361)
T ss_dssp             EEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEE
T ss_pred             EEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccc
Confidence            999986443221    1111           22357899999999766554 589999999875442    1 1      


Q ss_pred             -eeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCce--eEeecC----CCCeEEEEEecCCcEEEEE-cC--C
Q 018784          139 -REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI--VQTLET----KSPVTSAEVSRDGRYITTA-DG--S  208 (350)
Q Consensus       139 -~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~--~~~~~~----~~~v~~~~~~~~~~~l~~~-~~--~  208 (350)
                       .........+..++|++++..+++++..+++|.+||+.+++.  +..+..    ......++|+|+|++|+++ .+  +
T Consensus       203 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~  282 (361)
T 3scy_A          203 EAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD  282 (361)
T ss_dssp             EEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred             cceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence             112334456788999876666667766789999999987754  232322    2346789999999987544 33  6


Q ss_pred             cEEEEECC--Ccc--eeeeeecCCCCceeEecCCCCcEEEEec-CCCeEEEEEc--ccCeeEEee-cCCCcCEEEEEEc
Q 018784          209 SVKFWDAN--HFG--LVKGYNMPCNTESASLEPKLGNIFIAGG-EDMWVHVFDF--HTGEQIGCN-KGHHGPVHCVRFS  279 (350)
Q Consensus       209 ~i~vwd~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~l~sg~-~d~~i~v~d~--~~~~~~~~~-~~h~~~v~~l~~s  279 (350)
                      .|.+|++.  +..  .+..+.....+..+.+.+ ++++|++++ .++.|.+|++  .+++..... ..+...+.|+.|.
T Consensus       283 ~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          283 GVAIFKVDETNGTLTKVGYQLTGIHPRNFIITP-NGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEEEEEECTTTCCEEEEEEEECSSCCCEEEECT-TSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             EEEEEEEcCCCCcEEEeeEecCCCCCceEEECC-CCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            89999985  333  333333323445566766 466555555 6789999655  466655443 2345578899886

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.85  E-value=3.9e-19  Score=161.57  Aligned_cols=271  Identities=15%  Similarity=0.071  Sum_probs=181.6

Q ss_pred             cCCCccEEEEEeC-CCC--eeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeec-c
Q 018784           27 ITPDGFFLVSASK-DSS--PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH-K  102 (350)
Q Consensus        27 ~s~dg~~lasgs~-d~~--v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h-~  102 (350)
                      ++|||+.||.++. ++.  +.+||+.+++......+|...+..++|+|+++.|+.++.++.|++||+.+++....+.. .
T Consensus        43 ~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~  122 (388)
T 3pe7_A           43 FTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPA  122 (388)
T ss_dssp             BCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCT
T ss_pred             CCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechh
Confidence            4569999998887 674  77789999988877777877766778999999999999999999999999887665543 3


Q ss_pred             ccEeEE--EEcCCCCeEEE----------------------eeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeC-CC
Q 018784          103 HIVRAC--AFSEDTHLLLT----------------------GGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLH-SD  157 (350)
Q Consensus       103 ~~V~~~--~~~~~~~~l~s----------------------g~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~  157 (350)
                      ..+...  .++|++.+++.                      ...+..|.+||+.+++.  .....+...+..+.|+| ++
T Consensus       123 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~~~~~~~~~sp~dg  200 (388)
T 3pe7_A          123 EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES--TVILQENQWLGHPIYRPYDD  200 (388)
T ss_dssp             TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE--EEEEEESSCEEEEEEETTEE
T ss_pred             hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce--EEeecCCccccccEECCCCC
Confidence            334333  34899998874                      23457899999986542  33334456688899998 55


Q ss_pred             CcEEEEEeC-----CCeEEEEECCCCceeEeecCC--CCeEEEEEecCCcEEE-EEc--CC---cEEEEECCCcceeeee
Q 018784          158 QTILSSCTD-----SGGVRLWDARSGKIVQTLETK--SPVTSAEVSRDGRYIT-TAD--GS---SVKFWDANHFGLVKGY  224 (350)
Q Consensus       158 ~~~~~s~~~-----dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~-~~~--~~---~i~vwd~~~~~~~~~~  224 (350)
                      ..++.+...     ...|.++|+..++........  ..+....|+|||+.|+ .+.  +.   .|.+||+.+.+.....
T Consensus       201 ~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~  280 (388)
T 3pe7_A          201 STVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLT  280 (388)
T ss_dssp             EEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEE
T ss_pred             CEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEE
Confidence            545444332     237888888765543333333  2477789999998653 332  22   3999999887643322


Q ss_pred             ecCCC------CceeEecCCCCcEEEEe---------cCCCeEEEEEcccCeeEEeecCCCc-----------CEEEEEE
Q 018784          225 NMPCN------TESASLEPKLGNIFIAG---------GEDMWVHVFDFHTGEQIGCNKGHHG-----------PVHCVRF  278 (350)
Q Consensus       225 ~~~~~------~~~~~~~~~~~~~l~sg---------~~d~~i~v~d~~~~~~~~~~~~h~~-----------~v~~l~~  278 (350)
                      ..+..      .....+.+ +++.|+..         ..+..|++||+.+++.. .+..|..           .+.+++|
T Consensus       281 ~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~  358 (388)
T 3pe7_A          281 SMPACSHLMSNYDGSLMVG-DGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSF  358 (388)
T ss_dssp             EECCEEEEEECTTSSEEEE-EECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEE
T ss_pred             cCCCceeeeecCCCCeEcc-CCCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccC
Confidence            22210      11123444 34444432         45678999999887653 4444544           5788999


Q ss_pred             cCCCCEEEEec-CCCcEEEecCCC
Q 018784          279 SPGGESYASGS-EDGTIRIWQTNP  301 (350)
Q Consensus       279 sp~~~~lasgs-~Dg~v~vw~~~~  301 (350)
                      +|||+.|+..+ .++...||.++.
T Consensus       359 spDg~~l~~~s~~~g~~~l~~~~l  382 (388)
T 3pe7_A          359 TPDDKQILFTSDVHGKPALYLATL  382 (388)
T ss_dssp             CTTSSEEEEEECTTSSCEEEEEEC
T ss_pred             CCCCCEEEEEecCCCceeEEEEEC
Confidence            99998877544 578888886643

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.84  E-value=1.3e-17  Score=148.72  Aligned_cols=246  Identities=11%  Similarity=0.137  Sum_probs=185.9

Q ss_pred             CCceeEEEecccCCCccEEEEEeCC------------------------CCeeEeeCCCCceeeecc-CccCCeEEEEEC
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKD------------------------SSPMLRNGETGDWIGTFE-GHKGAVWSCCLD   70 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d------------------------~~v~iw~~~~~~~~~~l~-gH~~~V~~v~~~   70 (350)
                      .+.+.+|+|+|   +|+++++.+.+                        ++|.+||..+++.+..+. ++-.....++++
T Consensus        23 l~~v~~va~d~---~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d   99 (329)
T 3fvz_A           23 PGQVSGVALDS---KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSID   99 (329)
T ss_dssp             CSCEEEEEECT---TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEEC
T ss_pred             cCCceEEEECC---CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEEC
Confidence            45789999986   89999998887                        479999999999887665 555678899999


Q ss_pred             CCCcEEEEeeCCCeEEEeeCCCCC-eeeeee----------ccccEeEEEEcC-CCCeEEEee-CCCeEEEEECCCCCCC
Q 018784           71 ANALFSASGSADFTAKLWDALTGD-EKHSFE----------HKHIVRACAFSE-DTHLLLTGG-FEKILRIFDLNRPDAP  137 (350)
Q Consensus        71 ~~~~~l~s~s~Dg~v~vWd~~~~~-~~~~~~----------h~~~V~~~~~~~-~~~~l~sg~-~d~~v~vwd~~~~~~~  137 (350)
                      +++.++++...++.|++||..... .+..+.          +-..+..++++| ++.++++.+ .++.|++|+.. +...
T Consensus       100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~  178 (329)
T 3fvz_A          100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFV  178 (329)
T ss_dssp             TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEE
T ss_pred             CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEE
Confidence            999999999999999999975442 334332          223588999999 788888876 69999999953 2221


Q ss_pred             CeeecC----------CCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC---CCCeEEEEEecCCcEEEE
Q 018784          138 PREVGN----------SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITT  204 (350)
Q Consensus       138 ~~~~~~----------~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~  204 (350)
                       .....          .......+++.+..+.++++...++.|++||..+++.+..+..   ...+..++++| +..+..
T Consensus       179 -~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~  256 (329)
T 3fvz_A          179 -TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAV  256 (329)
T ss_dssp             -EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEE
T ss_pred             -EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEe
Confidence             11111          1234788998876688888888899999999998988877743   34567788888 433322


Q ss_pred             EcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEee---cCCCcCEEEEEEcCC
Q 018784          205 ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCN---KGHHGPVHCVRFSPG  281 (350)
Q Consensus       205 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~---~~h~~~v~~l~~sp~  281 (350)
                      .                                  ++.+++...+..|++||+.+++.+..+   .++...+..|+++|+
T Consensus       257 ~----------------------------------g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~d  302 (329)
T 3fvz_A          257 N----------------------------------GKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASED  302 (329)
T ss_dssp             E----------------------------------CCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTT
T ss_pred             C----------------------------------CCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCC
Confidence            1                                  223333445667888998888887776   367778999999999


Q ss_pred             CCEEEEecCCCcEEEecCCC
Q 018784          282 GESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       282 ~~~lasgs~Dg~v~vw~~~~  301 (350)
                      |.++++...+++|++|++..
T Consensus       303 G~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          303 GTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             SEEEEEESSSCCEEEEEEEE
T ss_pred             CCEEEEECCCCEEEEEeCCc
Confidence            98899999999999998753

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.83  E-value=1.7e-18  Score=156.66  Aligned_cols=267  Identities=13%  Similarity=0.133  Sum_probs=173.2

Q ss_pred             EEEEeCC--CCeeEee--CCCCceee--ecc-CccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC-CCCeeeeeecc--c
Q 018784           34 LVSASKD--SSPMLRN--GETGDWIG--TFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDAL-TGDEKHSFEHK--H  103 (350)
Q Consensus        34 lasgs~d--~~v~iw~--~~~~~~~~--~l~-gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~-~~~~~~~~~h~--~  103 (350)
                      |..|+..  +.|.+|+  .+++++..  ... ++...+..++++|+++++++++.+ .|.+|++. +++......+.  +
T Consensus         5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g   83 (365)
T 1jof_A            5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGG   83 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCC
Confidence            4445542  4566654  45665432  221 233456789999999999988888 99999986 66544333322  3


Q ss_pred             cEeEEEEcCCCCe--EEEee-------------CCCeEEEEECCCCCCCCeeec----CCCCcEEEEEEeCCCCcEEEEE
Q 018784          104 IVRACAFSEDTHL--LLTGG-------------FEKILRIFDLNRPDAPPREVG----NSSGSIRTVAWLHSDQTILSSC  164 (350)
Q Consensus       104 ~V~~~~~~~~~~~--l~sg~-------------~d~~v~vwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~s~  164 (350)
                      .+..++|+|++++  ++++.             .++++.+|++...........    .+...+..++|+++++.++++.
T Consensus        84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~  163 (365)
T 1jof_A           84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence            3566899999994  55653             689999999963222211111    2456788999987666565555


Q ss_pred             eCCCeEEEEECC-CCcee--Eeec---CCCCeEEEEEecCCcEEEEEc--CCcEEEEECC--Cccee---eeee-cCC--
Q 018784          165 TDSGGVRLWDAR-SGKIV--QTLE---TKSPVTSAEVSRDGRYITTAD--GSSVKFWDAN--HFGLV---KGYN-MPC--  228 (350)
Q Consensus       165 ~~dg~i~iwd~~-~~~~~--~~~~---~~~~v~~~~~~~~~~~l~~~~--~~~i~vwd~~--~~~~~---~~~~-~~~--  228 (350)
                      ..++.|++||+. +++..  ..+.   +...+..++|+|+|++++.+.  ++.|.+|+..  ++...   ..+. .+.  
T Consensus       164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~  243 (365)
T 1jof_A          164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI  243 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred             CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence            556899999998 67643  3333   145688999999998876543  5789999764  34332   1121 111  


Q ss_pred             -----------CCceeE-ecCCCCcEEEEecC-CC-----eEEEEEcc-cCeeEE---eecCCCcCEEEEEEcC---CCC
Q 018784          229 -----------NTESAS-LEPKLGNIFIAGGE-DM-----WVHVFDFH-TGEQIG---CNKGHHGPVHCVRFSP---GGE  283 (350)
Q Consensus       229 -----------~~~~~~-~~~~~~~~l~sg~~-d~-----~i~v~d~~-~~~~~~---~~~~h~~~v~~l~~sp---~~~  283 (350)
                                 ....+. +.+ ++++|+++.. ++     .|.+|++. +++...   ....+...+..++|+|   +|+
T Consensus       244 ~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~  322 (365)
T 1jof_A          244 PDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE  322 (365)
T ss_dssp             CCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT
T ss_pred             CCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC
Confidence                       123445 555 5666655543 23     89999996 566443   2333555567899999   899


Q ss_pred             EEEEecCC-CcEEEecCCCC
Q 018784          284 SYASGSED-GTIRIWQTNPP  302 (350)
Q Consensus       284 ~lasgs~D-g~v~vw~~~~~  302 (350)
                      +|++++.+ +.|.+|+++..
T Consensus       323 ~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          323 WMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEECSSSCEEEEEEEETT
T ss_pred             EEEEEEcCCCeEEEEEEchh
Confidence            99988865 89999988643

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.82  E-value=5e-19  Score=174.06  Aligned_cols=276  Identities=11%  Similarity=0.051  Sum_probs=183.1

Q ss_pred             ceeEEEecccCCCccEEEEEeC---------CCCeeEeeCCCCcee--eeccCccCCeEEEEECCCCcEEEEeeCCCeEE
Q 018784           18 PVVDLFYSPITPDGFFLVSASK---------DSSPMLRNGETGDWI--GTFEGHKGAVWSCCLDANALFSASGSADFTAK   86 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~---------d~~v~iw~~~~~~~~--~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~   86 (350)
                      .+.+++|||   ||++||.++.         |+++++||+.+++.+  ..+.   ..+..++|+|||+.+|.++ |+.|+
T Consensus        61 ~~~~~~~Sp---Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~-~~~i~  133 (719)
T 1z68_A           61 NASNYGLSP---DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY-QNNIY  133 (719)
T ss_dssp             TCSEEEECT---TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE-TTEEE
T ss_pred             ceeeEEECC---CCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC---cccccceECCCCCEEEEEE-CCeEE
Confidence            388888886   9999999887         789999999998873  2332   5688899999999998875 88999


Q ss_pred             EeeCCCCCeeeee--eccccE-----------------eEEEEcCCCCeEEEeeCCC-----------------------
Q 018784           87 LWDALTGDEKHSF--EHKHIV-----------------RACAFSEDTHLLLTGGFEK-----------------------  124 (350)
Q Consensus        87 vWd~~~~~~~~~~--~h~~~V-----------------~~~~~~~~~~~l~sg~~d~-----------------------  124 (350)
                      +||+.+++.....  .+...|                 .+++|+|||+.|+.++.|.                       
T Consensus       134 ~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  213 (719)
T 1z68_A          134 LKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP  213 (719)
T ss_dssp             EESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred             EEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence            9999887654432  122222                 4899999999999987652                       


Q ss_pred             -----------eEEEEECCCCCCC----C---eeecCCCCcEEEEEEeCCCCcEEEEEeCC----CeEEEEE----CCCC
Q 018784          125 -----------ILRIFDLNRPDAP----P---REVGNSSGSIRTVAWLHSDQTILSSCTDS----GGVRLWD----ARSG  178 (350)
Q Consensus       125 -----------~v~vwd~~~~~~~----~---~~~~~~~~~v~~~~~~~~~~~~~~s~~~d----g~i~iwd----~~~~  178 (350)
                                 .|++||+.++...    .   .....+...+..++|+++ +.++++....    ..|.+||    +.++
T Consensus       214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g  292 (719)
T 1z68_A          214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTD-ERVCLQWLKRVQNVSVLSICDFREDWQTW  292 (719)
T ss_dssp             CCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSS-SEEEEEEEESSTTEEEEEEEEECSSSSSE
T ss_pred             CCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCC-CeEEEEEeccccCeEEEEEEcccCCCCCC
Confidence                       7889999764321    0   112246677899999986 5666664322    2488899    8887


Q ss_pred             ceeEeec-----CCCCeE-----EEEEecCCcEEE--EE-cCC--cEEEEECCCcceeeeeecCCC-CceeEecCCCCcE
Q 018784          179 KIVQTLE-----TKSPVT-----SAEVSRDGRYIT--TA-DGS--SVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNI  242 (350)
Q Consensus       179 ~~~~~~~-----~~~~v~-----~~~~~~~~~~l~--~~-~~~--~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  242 (350)
                      ++...+.     +...+.     .+.|+|||+.++  ++ .++  .|.+||+.+... +.+..... .....+. +.+.+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~~~v~~~~~~-d~~~i  370 (719)
T 1z68_A          293 DCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSGKWEAINIFRV-TQDSL  370 (719)
T ss_dssp             ECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCSSSCEEEEEEE-CSSEE
T ss_pred             ceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccCceEEEEEEEE-eCCEE
Confidence            6654441     223344     678999998543  33 333  577888766542 22222111 1222333 33344


Q ss_pred             EEEecC----CCeEEEEEccc--Ce-eEEeec----CCCcCEEEEEEcCCCCEEE-EecCC--CcEEEecCCCCC
Q 018784          243 FIAGGE----DMWVHVFDFHT--GE-QIGCNK----GHHGPVHCVRFSPGGESYA-SGSED--GTIRIWQTNPPN  303 (350)
Q Consensus       243 l~sg~~----d~~i~v~d~~~--~~-~~~~~~----~h~~~v~~l~~sp~~~~la-sgs~D--g~v~vw~~~~~~  303 (350)
                      ++++..    ++.+++|.+..  +. ....+.    +|...+..+.|+|++++++ +++.+  ..+.+|++...+
T Consensus       371 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~  445 (719)
T 1z68_A          371 FYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ  445 (719)
T ss_dssp             EEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred             EEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC
Confidence            455544    47888988764  42 123333    3667789999999988766 44443  468899876544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.82  E-value=5.8e-17  Score=141.16  Aligned_cols=235  Identities=12%  Similarity=0.165  Sum_probs=166.0

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeecc------CccCCeEEEEE-CCCCcEEEEeeC-CCeE
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE------GHKGAVWSCCL-DANALFSASGSA-DFTA   85 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~------gH~~~V~~v~~-~~~~~~l~s~s~-Dg~v   85 (350)
                      ||...+.++++++   +|.++++.+.++.|.+|+.. ++.+..+.      +|...+..+++ .+++.++++... ++.|
T Consensus        27 g~~~~p~~v~~~~---~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i  102 (286)
T 1q7f_A           27 GQFTEPSGVAVNA---QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI  102 (286)
T ss_dssp             TCBSCEEEEEECT---TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred             CccCCCceEEECC---CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEE
Confidence            5667888998886   89999998999999999976 66666553      35567889999 578888877644 8999


Q ss_pred             EEeeCCCCCeeeeee--ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeec--CCCCcEEEEEEeCCCCcEE
Q 018784           86 KLWDALTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG--NSSGSIRTVAWLHSDQTIL  161 (350)
Q Consensus        86 ~vWd~~~~~~~~~~~--h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~  161 (350)
                      ++|| .+++....+.  +...+..+++.|+++++++...++.|.+||... .. .....  .+...+..+++.+ ++.++
T Consensus       103 ~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~-~~~~~~~~~~~~p~~i~~~~-~g~l~  178 (286)
T 1q7f_A          103 QIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NV-LHKFGCSKHLEFPNGVVVND-KQEIF  178 (286)
T ss_dssp             EEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE-EEEEECTTTCSSEEEEEECS-SSEEE
T ss_pred             EEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CE-EEEeCCCCccCCcEEEEECC-CCCEE
Confidence            9999 4566555553  335689999999999888888889999999652 21 12222  2344678888876 45677


Q ss_pred             EEEeCCCeEEEEECCCCceeEeecCC---CCeEEEEEecCCcEEEEEc-CC-cEEEEECCCcceeeeeecCCCCceeEec
Q 018784          162 SSCTDSGGVRLWDARSGKIVQTLETK---SPVTSAEVSRDGRYITTAD-GS-SVKFWDANHFGLVKGYNMPCNTESASLE  236 (350)
Q Consensus       162 ~s~~~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~-~~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~  236 (350)
                      ++...++.|++||. +++.+..+...   ..+..++++++|+++++.. ++ .|.+||..                    
T Consensus       179 v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--------------------  237 (286)
T 1q7f_A          179 ISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--------------------  237 (286)
T ss_dssp             EEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--------------------
T ss_pred             EEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--------------------
Confidence            77777899999997 45555555432   4566777777777666553 22 56666532                    


Q ss_pred             CCCCcEEEEecCCCeEEEEEcccCeeEEeecC--CCcCEEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784          237 PKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG--HHGPVHCVRFSPGGESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       237 ~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~--h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~  301 (350)
                                             ++.+..+..  ....+.+++++|+|+++++ +.|++|++|++..
T Consensus       238 -----------------------g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          238 -----------------------GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             -----------------------SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             -----------------------CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence                                   222222211  1234788999999988877 5799999998754

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.82  E-value=5.9e-18  Score=167.07  Aligned_cols=275  Identities=10%  Similarity=0.002  Sum_probs=176.8

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCe-----EEEEECCCCcEEEEeeCC--------
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAV-----WSCCLDANALFSASGSAD--------   82 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V-----~~v~~~~~~~~l~s~s~D--------   82 (350)
                      ......+.|+|   ||.+++++  |++|++||..+++....+.+|....     ..+.|+||+++++.++.+        
T Consensus        16 ~~~~~~~~w~~---dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~   90 (740)
T 4a5s_A           16 RLKLYSLRWIS---DHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSY   90 (740)
T ss_dssp             CCCCCCEEECS---SSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred             cccccccEECC---CCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEcc
Confidence            33456777775   99999986  9999999999999888888887542     336889999999988887        


Q ss_pred             -CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcE-------------
Q 018784           83 -FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSI-------------  148 (350)
Q Consensus        83 -g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v-------------  148 (350)
                       +.+.+||+.+++......|...+...+|+|||+.||.+ .|+.|.+|++.++.........+...+             
T Consensus        91 ~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~  169 (740)
T 4a5s_A           91 TASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV  169 (740)
T ss_dssp             EEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred             ceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence             55679999998766555677889999999999999887 478999999876543211111122212             


Q ss_pred             ----EEEEEeCCCCcEEEEEeCCC-----------------------------------eEEEEECCC---Cc--eeEee
Q 018784          149 ----RTVAWLHSDQTILSSCTDSG-----------------------------------GVRLWDARS---GK--IVQTL  184 (350)
Q Consensus       149 ----~~~~~~~~~~~~~~s~~~dg-----------------------------------~i~iwd~~~---~~--~~~~~  184 (350)
                          ..+.|+|++..++....++.                                   +|++||+.+   ++  ....+
T Consensus       170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l  249 (740)
T 4a5s_A          170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI  249 (740)
T ss_dssp             SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred             cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence                34788876665554432222                                   588899988   73  22233


Q ss_pred             c-------CCCCeEEEEEecCCcEEEEE--c---CCcEEEEECCCcc----eee--ee--ecCCC------CceeEecCC
Q 018784          185 E-------TKSPVTSAEVSRDGRYITTA--D---GSSVKFWDANHFG----LVK--GY--NMPCN------TESASLEPK  238 (350)
Q Consensus       185 ~-------~~~~v~~~~~~~~~~~l~~~--~---~~~i~vwd~~~~~----~~~--~~--~~~~~------~~~~~~~~~  238 (350)
                      .       ....+..+.|+|||++++..  .   +..|++||+.++.    +..  .+  .....      .....+.+ 
T Consensus       250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp-  328 (740)
T 4a5s_A          250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL-  328 (740)
T ss_dssp             CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT-
T ss_pred             cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC-
Confidence            2       33457889999999966543  2   2369999988765    221  11  11111      12345555 


Q ss_pred             CCcEEE-Eec-CCC--eEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCE-EEEecC----CCcEEEecC
Q 018784          239 LGNIFI-AGG-EDM--WVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGES-YASGSE----DGTIRIWQT  299 (350)
Q Consensus       239 ~~~~l~-sg~-~d~--~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~-lasgs~----Dg~v~vw~~  299 (350)
                      +++.++ ..+ .+|  .|++||+.+++... +......|..+.. ++++. +++++.    .+...||.+
T Consensus       329 DG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v  396 (740)
T 4a5s_A          329 DGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKI  396 (740)
T ss_dssp             TSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEE
T ss_pred             CCCEEEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEE
Confidence            466544 444 344  58888887765543 3333444555432 33544 455554    244555543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.80  E-value=1.4e-17  Score=150.54  Aligned_cols=241  Identities=10%  Similarity=0.100  Sum_probs=162.1

Q ss_pred             cCCceeEEEecccCCCccEEEEEeCCCCeeEeeCC-CCceeeeccCcc--CCeEEEEECCCCc--EEEEee---------
Q 018784           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE-TGDWIGTFEGHK--GAVWSCCLDANAL--FSASGS---------   80 (350)
Q Consensus        15 H~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~-~~~~~~~l~gH~--~~V~~v~~~~~~~--~l~s~s---------   80 (350)
                      +...+..++|+|   ||++|++++.+ ++.+|++. ++++..... |.  +....++++|+++  ++++++         
T Consensus        38 ~~~~~~~~a~sp---dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~-~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~  112 (365)
T 1jof_A           38 QDEPISWMTFDH---ERKNIYGAAMK-KWSSFAVKSPTEIVHEAS-HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYAN  112 (365)
T ss_dssp             TTCCCSEEEECT---TSSEEEEEEBT-EEEEEEEEETTEEEEEEE-EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred             CCCCCcEEEECC---CCCEEEEEccc-eEEEEEECCCCCEEEeeE-eecCCCCccEEECCCCCEEEEEEecCCcceeccc
Confidence            344677888876   99999999888 99999987 777654322 11  2344578999998  455664         


Q ss_pred             ----CCCeEEEeeCC-CCCeeeeee-----ccccEeEEEEcCCCCeEEEee-CCCeEEEEECC-CCCCCC-eeec--CCC
Q 018784           81 ----ADFTAKLWDAL-TGDEKHSFE-----HKHIVRACAFSEDTHLLLTGG-FEKILRIFDLN-RPDAPP-REVG--NSS  145 (350)
Q Consensus        81 ----~Dg~v~vWd~~-~~~~~~~~~-----h~~~V~~~~~~~~~~~l~sg~-~d~~v~vwd~~-~~~~~~-~~~~--~~~  145 (350)
                          .++++++|++. .++....+.     +...+.+++|+|+|++|+++. .++.|++|++. +++... ....  .+.
T Consensus       113 ~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g  192 (365)
T 1jof_A          113 PFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG  192 (365)
T ss_dssp             EESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred             eeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence                69999999986 355433322     456789999999999888765 46899999997 443221 1111  134


Q ss_pred             CcEEEEEEeCCCCcEEEEEeCCCeEEEEECC--CCcee---Eeec---CC----C-------CeEEEE-EecCCcEEEEE
Q 018784          146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDAR--SGKIV---QTLE---TK----S-------PVTSAE-VSRDGRYITTA  205 (350)
Q Consensus       146 ~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~--~~~~~---~~~~---~~----~-------~v~~~~-~~~~~~~l~~~  205 (350)
                      ..+..++|+++++.+++++..+++|.+|++.  +++..   ..+.   ..    .       .+..++ |+|||++|+++
T Consensus       193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~  272 (365)
T 1jof_A          193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEE
Confidence            5688999987666666666667899999765  56542   1221   11    2       478899 99999987654


Q ss_pred             c--CC-----cEEEEECC-Ccceeee---ee-cCCCCceeEecCC--CCcEEEEecC-CCeEEEEEcccC
Q 018784          206 D--GS-----SVKFWDAN-HFGLVKG---YN-MPCNTESASLEPK--LGNIFIAGGE-DMWVHVFDFHTG  260 (350)
Q Consensus       206 ~--~~-----~i~vwd~~-~~~~~~~---~~-~~~~~~~~~~~~~--~~~~l~sg~~-d~~i~v~d~~~~  260 (350)
                      +  ..     .|.+|++. ++.....   .. .......+.+.|.  ++++|++++. ++.|.+|++...
T Consensus       273 ~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            3  23     79999986 4443321   21 1223445556664  5777877776 489999998765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.80  E-value=5.8e-18  Score=153.96  Aligned_cols=274  Identities=13%  Similarity=0.059  Sum_probs=175.4

Q ss_pred             ceeEEEecccCCCccEEEEEeCC-C--CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC
Q 018784           18 PVVDLFYSPITPDGFFLVSASKD-S--SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD   94 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d-~--~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~   94 (350)
                      .+..++|+   |||++|+..+.+ +  .+.+|+..+++......++......+.|+|+++.|+.++.++.|.+||+.+++
T Consensus        37 ~~~~~~~S---pdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~  113 (396)
T 3c5m_A           37 YFYQKCFT---QDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE  113 (396)
T ss_dssp             CTTSCCBC---TTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred             eeecCcCC---CCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC
Confidence            36666666   499988776543 3  57778988887655444443333346899999999999999999999998887


Q ss_pred             eeeeee-ccccEeE-------------------EEEcCCCCeEEEe-----eCCCeEEEEECCCCCCCCeeecCCCCcEE
Q 018784           95 EKHSFE-HKHIVRA-------------------CAFSEDTHLLLTG-----GFEKILRIFDLNRPDAPPREVGNSSGSIR  149 (350)
Q Consensus        95 ~~~~~~-h~~~V~~-------------------~~~~~~~~~l~sg-----~~d~~v~vwd~~~~~~~~~~~~~~~~~v~  149 (350)
                      ...... +......                   +.++|+++.++..     ..+..|.+||+.++..  .....+...+.
T Consensus       114 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~--~~~~~~~~~~~  191 (396)
T 3c5m_A          114 EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL--EVIHQDTAWLG  191 (396)
T ss_dssp             EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE--EEEEEESSCEE
T ss_pred             cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE--EeeccCCcccc
Confidence            655444 2222222                   3467888776654     4567899999976543  22223456688


Q ss_pred             EEEEeC-CCCcEEEEEeCC-----CeEEEEECCCCceeEeecC--CCCeEEEEEecCCcEEEEE-cC-----CcEEEEEC
Q 018784          150 TVAWLH-SDQTILSSCTDS-----GGVRLWDARSGKIVQTLET--KSPVTSAEVSRDGRYITTA-DG-----SSVKFWDA  215 (350)
Q Consensus       150 ~~~~~~-~~~~~~~s~~~d-----g~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~-~~-----~~i~vwd~  215 (350)
                      .+.|++ ++..+++.....     ..|.+||+..++.......  ...+..+.|+|+|++|+.. .+     +.|.+||+
T Consensus       192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~  271 (396)
T 3c5m_A          192 HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP  271 (396)
T ss_dssp             EEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECT
T ss_pred             cceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEEC
Confidence            899988 344444443221     3688999876654332222  1247778999999865433 22     34999999


Q ss_pred             CCcceeeeeecCCCCceeEecCCCCcEEEEec----------------CCCeEEEEEcccCeeEEeecCCCc--------
Q 018784          216 NHFGLVKGYNMPCNTESASLEPKLGNIFIAGG----------------EDMWVHVFDFHTGEQIGCNKGHHG--------  271 (350)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~----------------~d~~i~v~d~~~~~~~~~~~~h~~--------  271 (350)
                      .+.........+..  ...+.+.+++++++++                .+..|++||+.+++.. .+..+..        
T Consensus       272 ~~g~~~~l~~~~~~--~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~  348 (396)
T 3c5m_A          272 ETLENEEVMVMPPC--SHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGD  348 (396)
T ss_dssp             TTCCEEEEEECCSE--EEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTB
T ss_pred             CCCCeEEeeeCCCC--CCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCcccccccc
Confidence            87654433333321  2555553577777654                3478999999877643 3333433        


Q ss_pred             ---CEEEEEEcCCCCEEEEecC-CCcEEEecC
Q 018784          272 ---PVHCVRFSPGGESYASGSE-DGTIRIWQT  299 (350)
Q Consensus       272 ---~v~~l~~sp~~~~lasgs~-Dg~v~vw~~  299 (350)
                         .+..++|+|+|+.|+..+. ++...||.+
T Consensus       349 ~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          349 RQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             SSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             ccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence               2567889999998876654 566566654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.80  E-value=3e-17  Score=146.45  Aligned_cols=243  Identities=14%  Similarity=0.049  Sum_probs=159.4

Q ss_pred             ceeEEEecccCCCccEE-EEEeCCCCeeEeeCCCCceeeeccC-c-----cCCeEEEEECCCCcEEEEeeCC--------
Q 018784           18 PVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEG-H-----KGAVWSCCLDANALFSASGSAD--------   82 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~l-asgs~d~~v~iw~~~~~~~~~~l~g-H-----~~~V~~v~~~~~~~~l~s~s~D--------   82 (350)
                      .+..++|+|   +|+++ ++++.++.|.+||..+++.+..+.. +     ...+..++|+|+++++++++.+        
T Consensus        44 ~~~~~~~s~---dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~  120 (349)
T 1jmx_B           44 GPGTAMMAP---DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY  120 (349)
T ss_dssp             SSCEEEECT---TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred             CCceeEECC---CCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEccccccccccc
Confidence            567788875   88754 5666789999999999988877653 2     2336788999999999988866        


Q ss_pred             ----CeEEEeeCCCCC---eeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCC----------
Q 018784           83 ----FTAKLWDALTGD---EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS----------  145 (350)
Q Consensus        83 ----g~v~vWd~~~~~---~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~----------  145 (350)
                          +.|.+||+.+++   ....+.+...+.+++|+|+++ +++++.+  |.+||+.+++..........          
T Consensus       121 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  197 (349)
T 1jmx_B          121 VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGPD--IYKMDVKTGKYTVALPLRNWNRKGYSAPDV  197 (349)
T ss_dssp             EECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESSS--EEEECTTTCCEEEEECSTTCCCTTBCCCBC
T ss_pred             ccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccCc--EEEEeCCCCceeccccccccCCccccCccc
Confidence                999999998743   334455666789999999999 5555444  99999876543221111110          


Q ss_pred             ----------C---cEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeE--eecCCCCeEEEEEec-CCcEEEEEcCCc
Q 018784          146 ----------G---SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ--TLETKSPVTSAEVSR-DGRYITTADGSS  209 (350)
Q Consensus       146 ----------~---~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~~~  209 (350)
                                .   ....+++.+++............+..+|..+++...  .-.....+..++++| ++++++++ ++.
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~  276 (349)
T 1jmx_B          198 LYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNR  276 (349)
T ss_dssp             CCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESE
T ss_pred             eeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCe
Confidence                      0   223344432211000000000112224444443211  011334677899999 99988877 889


Q ss_pred             EEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecC
Q 018784          210 VKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG  268 (350)
Q Consensus       210 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~  268 (350)
                      |.+||+.+.+.++.+........+.+.+. +++|++++.++.|++||+.+++.+..+..
T Consensus       277 v~~~d~~~~~~~~~~~~~~~~~~~~~s~d-g~~l~~~~~~~~v~v~d~~~~~~~~~~~~  334 (349)
T 1jmx_B          277 LAKYDLKQRKLIKAANLDHTYYCVAFDKK-GDKLYLGGTFNDLAVFNPDTLEKVKNIKL  334 (349)
T ss_dssp             EEEEETTTTEEEEEEECSSCCCEEEECSS-SSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEECccCeEEEEEcCCCCccceEECCC-CCEEEEecCCCeEEEEeccccceeeeeec
Confidence            99999999888777766555666677764 56666678889999999999888766643

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.79  E-value=4.4e-17  Score=158.67  Aligned_cols=286  Identities=11%  Similarity=-0.027  Sum_probs=187.0

Q ss_pred             eeccCCceeEEEecccCCCccEEEEE--eCCCCeeEeeCCCCceeeeccCccCCeE---------EEEEC--CCCcE-EE
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSA--SKDSSPMLRNGETGDWIGTFEGHKGAVW---------SCCLD--ANALF-SA   77 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasg--s~d~~v~iw~~~~~~~~~~l~gH~~~V~---------~v~~~--~~~~~-l~   77 (350)
                      +.+|...+..++|++   ++.++++.  +.++...||....+.....+..|...+.         ...++  ||++. ++
T Consensus        19 ~~~~~~~~~~~~~s~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la   95 (662)
T 3azo_A           19 VASRSGRPACVGAVG---DEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV   95 (662)
T ss_dssp             HHHTCSCCEEEEEET---TEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred             HhhcCCccceeEEcC---CeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence            358999999999985   77777777  5688899998544455567777776665         55554  89887 65


Q ss_pred             Eee-CCCeEEEeeCC--C-CCeeeeee-----ccccEeEEEEcCCCCeEEEeeCC----------CeEEEEECCCCC---
Q 018784           78 SGS-ADFTAKLWDAL--T-GDEKHSFE-----HKHIVRACAFSEDTHLLLTGGFE----------KILRIFDLNRPD---  135 (350)
Q Consensus        78 s~s-~Dg~v~vWd~~--~-~~~~~~~~-----h~~~V~~~~~~~~~~~l~sg~~d----------~~v~vwd~~~~~---  135 (350)
                      .++ .+..|.+|++.  . +.......     |...+..++|+|||+.|+.++.+          ..|.+||+....   
T Consensus        96 ~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  175 (662)
T 3azo_A           96 FTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD  175 (662)
T ss_dssp             EEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred             EEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence            443 36677777765  3 44333333     56678999999999999988877          589999997621   


Q ss_pred             -CCCeeec-CCCCcEEEEEEeCCCCcEEEEEeCC-------CeEEEEECC-CC---ceeEeecC-CCCeEEEEEecCCcE
Q 018784          136 -APPREVG-NSSGSIRTVAWLHSDQTILSSCTDS-------GGVRLWDAR-SG---KIVQTLET-KSPVTSAEVSRDGRY  201 (350)
Q Consensus       136 -~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~~~d-------g~i~iwd~~-~~---~~~~~~~~-~~~v~~~~~~~~~~~  201 (350)
                       .....+. .+...+..++|+++++.++.+..+.       ..|++||+. ++   +....... ...+..+.|+|||++
T Consensus       176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l  255 (662)
T 3azo_A          176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL  255 (662)
T ss_dssp             GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred             CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence             1223333 4456677788987666555554332       479999998 56   43333333 467889999999997


Q ss_pred             EEEEc-CC--cEEEEECCCcceeeeeecCCC---------CceeEecCCCCcEEEEecCCCeEEEE--EcccCeeEEeec
Q 018784          202 ITTAD-GS--SVKFWDANHFGLVKGYNMPCN---------TESASLEPKLGNIFIAGGEDMWVHVF--DFHTGEQIGCNK  267 (350)
Q Consensus       202 l~~~~-~~--~i~vwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~sg~~d~~i~v~--d~~~~~~~~~~~  267 (350)
                      +++++ ++  .|.+||+.+............         .....+.+ ++.++++++. +.++||  |+.+++ +..+.
T Consensus       256 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~  332 (662)
T 3azo_A          256 IVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA-NGLIAVVHGK-GAAVLGILDPESGE-LVDAA  332 (662)
T ss_dssp             EEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT-TSCEEEEEBS-SSCEEEEEETTTTE-EEECC
T ss_pred             EEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeC-CCEEEEEEEc-CccEEEEEECCCCc-EEEec
Confidence            76664 45  577777755544322221111         11233333 5788888888 999999  444454 66777


Q ss_pred             CCCcCEEEE-EEcCCCCEEEEecCCCcEEE--ecCCCCC
Q 018784          268 GHHGPVHCV-RFSPGGESYASGSEDGTIRI--WQTNPPN  303 (350)
Q Consensus       268 ~h~~~v~~l-~~sp~~~~lasgs~Dg~v~v--w~~~~~~  303 (350)
                      .|...+..+ ++.++.-++++++.+....+  |++...+
T Consensus       333 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~  371 (662)
T 3azo_A          333 GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR  371 (662)
T ss_dssp             SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            887778877 55544444556666655444  4544443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.79  E-value=1.3e-16  Score=142.02  Aligned_cols=266  Identities=15%  Similarity=0.061  Sum_probs=182.8

Q ss_pred             CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCee
Q 018784           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK   96 (350)
Q Consensus        17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~   96 (350)
                      ..|.+++|++   ++..++..+.+++++.|   .++....+.++...+.+++|++++.+++++..++.|.+||..+++..
T Consensus         6 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~   79 (333)
T 2dg1_A            6 QDLPTLFYSG---KSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK   79 (333)
T ss_dssp             CCCCBCCSCG---GGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE
T ss_pred             cccceeeecC---CccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE
Confidence            3577887876   66677777889999999   44566677777778899999999999889889999999999887765


Q ss_pred             eee-eccccEeEEEEcCCCCeEEEeeCC----CeEEEEECCCCCCCCeee-cCCCCcEEEEEEeCCCCcEEEEEeC----
Q 018784           97 HSF-EHKHIVRACAFSEDTHLLLTGGFE----KILRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSCTD----  166 (350)
Q Consensus        97 ~~~-~h~~~V~~~~~~~~~~~l~sg~~d----~~v~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~s~~~----  166 (350)
                      ... .+...+.+++++|+++++++...+    +.|.+||........... ......+..+++.+. +.++++...    
T Consensus        80 ~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~-g~l~v~~~~~~~~  158 (333)
T 2dg1_A           80 RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSK-GGFYFTDFRGYST  158 (333)
T ss_dssp             EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTT-SCEEEEECCCBTT
T ss_pred             EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCC-CCEEEEecccccc
Confidence            544 456789999999999988877666    689999987544321111 123456888888764 556665543    


Q ss_pred             --CCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEE-EEE-cCCcEEEEECCC-cceeee------eecCC--CCcee
Q 018784          167 --SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TTA-DGSSVKFWDANH-FGLVKG------YNMPC--NTESA  233 (350)
Q Consensus       167 --dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~-~~~~i~vwd~~~-~~~~~~------~~~~~--~~~~~  233 (350)
                        .+.|..+|..+++.............++++|+++.+ ++. .++.|.+||..+ ......      .....  .+..+
T Consensus       159 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i  238 (333)
T 2dg1_A          159 NPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSC  238 (333)
T ss_dssp             BCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEE
T ss_pred             CCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCce
Confidence              356777777665544333333457889999999754 343 357899999863 222211      11111  22334


Q ss_pred             EecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCc------CEEEEEEcCCCCEEEEecCC
Q 018784          234 SLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHG------PVHCVRFSPGGESYASGSED  291 (350)
Q Consensus       234 ~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~------~v~~l~~sp~~~~lasgs~D  291 (350)
                      .+.+ +++++++...++.|.+||. +++.+..+..+..      .+.+++|+|++..|+.++.+
T Consensus       239 ~~d~-~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          239 CIDS-DDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEBT-TCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EECC-CCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            4444 4788888878899999998 5666555544332      68999999998666544444

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.78  E-value=2.2e-16  Score=140.67  Aligned_cols=256  Identities=14%  Similarity=0.090  Sum_probs=183.9

Q ss_pred             CCCCeeEeeCCCCceeeecc----C--ccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcC
Q 018784           39 KDSSPMLRNGETGDWIGTFE----G--HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE  112 (350)
Q Consensus        39 ~d~~v~iw~~~~~~~~~~l~----g--H~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~  112 (350)
                      .+++|.++|.++++....+.    +  .......+.+. .+.+.++...++.|.+||..+++.+..+.....+..+++++
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~   93 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLS   93 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeC
Confidence            48899999999998876541    1  12345667774 45666677788999999999999888777667789999999


Q ss_pred             CCCeEEEeeCCCeEEEEECCCCCCCCeeecCC----CCcEEEEEEeCCCCcEEEEEe-CCCeEEEEECCCCceeEeecCC
Q 018784          113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNS----SGSIRTVAWLHSDQTILSSCT-DSGGVRLWDARSGKIVQTLETK  187 (350)
Q Consensus       113 ~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~s~~-~dg~i~iwd~~~~~~~~~~~~~  187 (350)
                      +++..++...++.|.+||+.+.+.........    ......+++  .++.++++.. .+++|.++|+.+++.+..+...
T Consensus        94 ~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g  171 (328)
T 3dsm_A           94 DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG  171 (328)
T ss_dssp             TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS
T ss_pred             CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC
Confidence            98554554489999999997654322211111    013445555  3566676665 4789999999999988888766


Q ss_pred             CCeEEEEEecCCcEEEEEcC-----------CcEEEEECCCcceeeeeecCC--CCceeEecCCCCcEEEEecCCCeEEE
Q 018784          188 SPVTSAEVSRDGRYITTADG-----------SSVKFWDANHFGLVKGYNMPC--NTESASLEPKLGNIFIAGGEDMWVHV  254 (350)
Q Consensus       188 ~~v~~~~~~~~~~~l~~~~~-----------~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~sg~~d~~i~v  254 (350)
                      .....+.++|+|++++++.+           +.|.++|..+.+..+.+..+.  .+..+.+.+..+.++++.+   .|.+
T Consensus       172 ~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~  248 (328)
T 3dsm_A          172 IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN---DIWR  248 (328)
T ss_dssp             SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS---SEEE
T ss_pred             CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc---EEEE
Confidence            55678889999998877653           579999999888777776543  4556667765444444433   8999


Q ss_pred             EEcccCeeEEe--ecCCCcCEEEEEEcC-CCCEEEEe----cCCCcEEEecCC
Q 018784          255 FDFHTGEQIGC--NKGHHGPVHCVRFSP-GGESYASG----SEDGTIRIWQTN  300 (350)
Q Consensus       255 ~d~~~~~~~~~--~~~h~~~v~~l~~sp-~~~~lasg----s~Dg~v~vw~~~  300 (350)
                      ||..+++....  +.........++++| ++.++++.    ..++.|.+||..
T Consensus       249 ~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          249 MPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             EETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             EECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence            99988775421  222245789999999 56777777    678999999875

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.76  E-value=4.6e-15  Score=141.09  Aligned_cols=272  Identities=13%  Similarity=0.138  Sum_probs=199.7

Q ss_pred             CccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC--CCCeeeeeeccccEeE
Q 018784           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL--TGDEKHSFEHKHIVRA  107 (350)
Q Consensus        30 dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~--~~~~~~~~~h~~~V~~  107 (350)
                      .+.++++...+++|.++|..+++.+.++... ..+..+.++|+++++++++.|+.|.+||+.  +.+....+......+.
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~  244 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS  244 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             CceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCce
Confidence            5678888889999999999999999888643 356689999999999999999999999995  7777766665556789


Q ss_pred             EEEc----CCCCeEEEeeC-CCeEEEEECCCCCCCCeeec----------CCCCcEEEEEEeCCCCcEEEEEeCCCeEEE
Q 018784          108 CAFS----EDTHLLLTGGF-EKILRIFDLNRPDAPPREVG----------NSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (350)
Q Consensus       108 ~~~~----~~~~~l~sg~~-d~~v~vwd~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i  172 (350)
                      ++|+    |+|++++++.. +++|.++|..+.+.......          +....+..+..++....++++..++|+|.+
T Consensus       245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~  324 (567)
T 1qks_A          245 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL  324 (567)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEE
Confidence            9999    69998887654 69999999876443221110          012256777777777777888888899999


Q ss_pred             EECCCCce--eEeecCCCCeEEEEEecCCcEEEEEc--CCcEEEEECCCcceeeeeec-CCCC---ceeE-ecCCCCcEE
Q 018784          173 WDARSGKI--VQTLETKSPVTSAEVSRDGRYITTAD--GSSVKFWDANHFGLVKGYNM-PCNT---ESAS-LEPKLGNIF  243 (350)
Q Consensus       173 wd~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~vwd~~~~~~~~~~~~-~~~~---~~~~-~~~~~~~~l  243 (350)
                      +|..+.+.  +..+........+.|+|+++++.++.  ++.|.++|+.+.+.+..... ....   .... +.+..+.++
T Consensus       325 vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~  404 (567)
T 1qks_A          325 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVW  404 (567)
T ss_dssp             EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEE
T ss_pred             EecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEE
Confidence            99876542  33344445567788999999875543  57899999999887766655 2211   1222 345446666


Q ss_pred             EEec-CCCeEEEEEccc-------CeeEEeecCCCcCEEEEEEcCCCCEEEEecC-------CCcEEEecCCCC
Q 018784          244 IAGG-EDMWVHVFDFHT-------GEQIGCNKGHHGPVHCVRFSPGGESYASGSE-------DGTIRIWQTNPP  302 (350)
Q Consensus       244 ~sg~-~d~~i~v~d~~~-------~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~-------Dg~v~vw~~~~~  302 (350)
                      +++. .++.|.++|..+       .+.+.++......-..+.++|+++++.....       ...|.++|+.+.
T Consensus       405 ~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          405 ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             EEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             EeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence            6664 468999999987       5677777655444455789999998876552       469999998654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.74  E-value=2.3e-16  Score=153.63  Aligned_cols=271  Identities=11%  Similarity=0.025  Sum_probs=169.3

Q ss_pred             CCCccE-EEEEeC-CCCeeEeeCC--CCceeeeccC-----ccCCeEEEEECCCCcEEEEeeCC----------CeEEEe
Q 018784           28 TPDGFF-LVSASK-DSSPMLRNGE--TGDWIGTFEG-----HKGAVWSCCLDANALFSASGSAD----------FTAKLW   88 (350)
Q Consensus        28 s~dg~~-lasgs~-d~~v~iw~~~--~~~~~~~l~g-----H~~~V~~v~~~~~~~~l~s~s~D----------g~v~vW   88 (350)
                      +|||+. |+.++. +..|.+++..  .......+..     |...+..++|+|||+.|+.++.|          ..|++|
T Consensus        87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~  166 (662)
T 3azo_A           87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV  166 (662)
T ss_dssp             CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred             ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence            369987 765554 4455556554  2033445655     67788999999999999988877          689999


Q ss_pred             eCCC------CCeeeee-eccccEeEEEEcCCCCeEEEeeCC--------CeEEEEECC-CCC--CCCeeecCCCCcEEE
Q 018784           89 DALT------GDEKHSF-EHKHIVRACAFSEDTHLLLTGGFE--------KILRIFDLN-RPD--APPREVGNSSGSIRT  150 (350)
Q Consensus        89 d~~~------~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d--------~~v~vwd~~-~~~--~~~~~~~~~~~~v~~  150 (350)
                      |+.+      +...... .+...+..++|+|||++|+.++.+        ..|.+||+. ++.  ........+...+..
T Consensus       167 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~  246 (662)
T 3azo_A          167 PLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQ  246 (662)
T ss_dssp             ETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEE
T ss_pred             ECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcc
Confidence            9987      5554444 556778889999999999887755        379999997 331  222333445678899


Q ss_pred             EEEeCCCCcEEEEEeCCC--eEEEEECCCCceeEeecCCCC---------eEEEEEecCCcEEEEEcCCcEEEE--ECCC
Q 018784          151 VAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSP---------VTSAEVSRDGRYITTADGSSVKFW--DANH  217 (350)
Q Consensus       151 ~~~~~~~~~~~~s~~~dg--~i~iwd~~~~~~~~~~~~~~~---------v~~~~~~~~~~~l~~~~~~~i~vw--d~~~  217 (350)
                      +.|++++. +++++..++  .|.+||+.+++.......+..         +..+.+++++++++++..+.+++|  |+.+
T Consensus       247 ~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  325 (662)
T 3azo_A          247 AEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPES  325 (662)
T ss_dssp             EEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTT
T ss_pred             eEECCCCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCC
Confidence            99997666 777877888  677777767765443333221         456888899988876644777888  6554


Q ss_pred             cceeeeeecCCCCceeEe-cCCCCcEE-EEecCCC--eEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCc
Q 018784          218 FGLVKGYNMPCNTESASL-EPKLGNIF-IAGGEDM--WVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGT  293 (350)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~-~~~~~~~l-~sg~~d~--~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~  293 (350)
                      .. ++.+..+..... .+ .+..+.++ ++++.+.  .|.++|+.+++.......|...+....+.+...+.+....+..
T Consensus       326 ~~-~~~l~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~  403 (662)
T 3azo_A          326 GE-LVDAAGPWTEWA-ATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGRE  403 (662)
T ss_dssp             TE-EEECCSSCCEEE-EEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCE
T ss_pred             Cc-EEEecCCCCeEE-EEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCE
Confidence            43 344433322221 22 33333444 4444454  4555676677654433444433333344444444444444446


Q ss_pred             EEEecCCC
Q 018784          294 IRIWQTNP  301 (350)
Q Consensus       294 v~vw~~~~  301 (350)
                      |..|-+.+
T Consensus       404 i~~~~~~P  411 (662)
T 3azo_A          404 IHAHIYPP  411 (662)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEECC
Confidence            76665433

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.74  E-value=1.2e-15  Score=150.53  Aligned_cols=287  Identities=9%  Similarity=0.021  Sum_probs=176.3

Q ss_pred             eeccCCceeEEEe--cccCCCccEEEEEeCCCC---------eeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEee
Q 018784           12 CHGHSRPVVDLFY--SPITPDGFFLVSASKDSS---------PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS   80 (350)
Q Consensus        12 ~~gH~~~v~~~~~--~~~s~dg~~lasgs~d~~---------v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s   80 (350)
                      +.+|......+.+  -.++|||++|+.++.+.+         +.+||+.+++.. .+..|.+.+..++|+|||+.+|.+ 
T Consensus        52 ~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-  129 (740)
T 4a5s_A           52 LENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-  129 (740)
T ss_dssp             ECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-
T ss_pred             EechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-
Confidence            4666654433222  123459999999998744         459999998865 577888899999999999998877 


Q ss_pred             CCCeEEEeeCCCCCeeeee--eccccE-----------------eEEEEcCCCCeEEEeeCCC-----------------
Q 018784           81 ADFTAKLWDALTGDEKHSF--EHKHIV-----------------RACAFSEDTHLLLTGGFEK-----------------  124 (350)
Q Consensus        81 ~Dg~v~vWd~~~~~~~~~~--~h~~~V-----------------~~~~~~~~~~~l~sg~~d~-----------------  124 (350)
                      .|+.|.+|++.++......  .+...+                 ..+.|+|||+.|+.++.|.                 
T Consensus       130 ~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~  209 (740)
T 4a5s_A          130 WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQ  209 (740)
T ss_dssp             ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCS
T ss_pred             ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCC
Confidence            5799999999877644322  122212                 3589999999998875332                 


Q ss_pred             -------------------eEEEEECCC---CCC-CCeeec------CCCCcEEEEEEeCCCCcEEEEEe---CCCeEEE
Q 018784          125 -------------------ILRIFDLNR---PDA-PPREVG------NSSGSIRTVAWLHSDQTILSSCT---DSGGVRL  172 (350)
Q Consensus       125 -------------------~v~vwd~~~---~~~-~~~~~~------~~~~~v~~~~~~~~~~~~~~s~~---~dg~i~i  172 (350)
                                         +|.+||+.+   +.. ....+.      .+...+..++|++++..++....   .+..|++
T Consensus       210 ~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~  289 (740)
T 4a5s_A          210 YPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDI  289 (740)
T ss_dssp             SCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEE
T ss_pred             CCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEE
Confidence                               478888876   422 111222      25667889999986653443322   2347999


Q ss_pred             EECCCCc----ee--Eee--c-CCCC-----eEEEEEecCCcEEE-E-E-cC--CcEEEEECCCcceeeeeecCCCCcee
Q 018784          173 WDARSGK----IV--QTL--E-TKSP-----VTSAEVSRDGRYIT-T-A-DG--SSVKFWDANHFGLVKGYNMPCNTESA  233 (350)
Q Consensus       173 wd~~~~~----~~--~~~--~-~~~~-----v~~~~~~~~~~~l~-~-~-~~--~~i~vwd~~~~~~~~~~~~~~~~~~~  233 (350)
                      ||+.+++    +.  ..+  . ....     .....|+|||+.++ . + .+  ..|.+||+.+....+ ++........
T Consensus       290 ~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~-lT~g~~~v~~  368 (740)
T 4a5s_A          290 CDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF-ITKGTWEVIG  368 (740)
T ss_dssp             EEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE-SCCSSSCEEE
T ss_pred             EECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe-cccCCEEEEE
Confidence            9998887    22  111  1 2222     23678999998654 3 3 23  368889987654432 2221111111


Q ss_pred             EecCCCCcEEEEecC----CC--eEEEEEcccCeeEEeec----CCCcCEEEEEEcCCCCEEEEecCC---CcEEEecCC
Q 018784          234 SLEPKLGNIFIAGGE----DM--WVHVFDFHTGEQIGCNK----GHHGPVHCVRFSPGGESYASGSED---GTIRIWQTN  300 (350)
Q Consensus       234 ~~~~~~~~~l~sg~~----d~--~i~v~d~~~~~~~~~~~----~h~~~v~~l~~sp~~~~lasgs~D---g~v~vw~~~  300 (350)
                      .+.++.+.++.++..    .+  .|+..++..+.....+.    +....+..+.|+|++++++.....   ..+.+++..
T Consensus       369 ~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~  448 (740)
T 4a5s_A          369 IEALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSV  448 (740)
T ss_dssp             EEEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETT
T ss_pred             EEEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECC
Confidence            222333455555554    23  34444555444332343    234678999999999976543322   356777665


Q ss_pred             C
Q 018784          301 P  301 (350)
Q Consensus       301 ~  301 (350)
                      .
T Consensus       449 ~  449 (740)
T 4a5s_A          449 N  449 (740)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.73  E-value=1.3e-15  Score=137.48  Aligned_cols=259  Identities=11%  Similarity=0.022  Sum_probs=177.8

Q ss_pred             ccCCceeEEEecccCCCccEEEEEe----------CCCCeeEeeCCCCceeeeccCc------cCCeEEEEECCCCcEEE
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSAS----------KDSSPMLRNGETGDWIGTFEGH------KGAVWSCCLDANALFSA   77 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs----------~d~~v~iw~~~~~~~~~~l~gH------~~~V~~v~~~~~~~~l~   77 (350)
                      .+..|  .++|+|   ||++|.+++          .+++|.+||..+++.+.++..+      ......++++|++++|+
T Consensus        49 ~g~~p--~i~~sp---dg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~  123 (361)
T 2oiz_A           49 TAFNG--HVQVSN---DGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIV  123 (361)
T ss_dssp             CCEEE--EEEECT---TSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEE
T ss_pred             CCCCC--ceEECC---CCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEE
Confidence            34445  777876   999998876          3677999999999888777532      23456789999999988


Q ss_pred             EeeC--CCeEEEeeCCCCCeeee-eeccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCCCCee------ecCCCCc
Q 018784           78 SGSA--DFTAKLWDALTGDEKHS-FEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPRE------VGNSSGS  147 (350)
Q Consensus        78 s~s~--Dg~v~vWd~~~~~~~~~-~~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~~~------~~~~~~~  147 (350)
                      ++..  +++|.+||+.+++.+.. +..... ..+.+.|++ ..+++.+.|+.+.+|++.........      .......
T Consensus       124 v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~  202 (361)
T 2oiz_A          124 LQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP  202 (361)
T ss_dssp             EEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC
T ss_pred             EECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc
Confidence            8763  68999999999877766 655433 335567765 67778889999999987542211100      0011111


Q ss_pred             EEEEEEeCCCCcEEEEEeCCCeEEEEECCCCce--eEeecC-----------CCCeEEEEEecCCcEEEEE-c-------
Q 018784          148 IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI--VQTLET-----------KSPVTSAEVSRDGRYITTA-D-------  206 (350)
Q Consensus       148 v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~--~~~~~~-----------~~~v~~~~~~~~~~~l~~~-~-------  206 (350)
                      + .+.+.+.+..++ ..+.+++|.++|+.....  ...+..           ......++++|+++.+... .       
T Consensus       203 ~-~~~~~~~g~~~~-~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~  280 (361)
T 2oiz_A          203 I-FIAPALDKDKAH-FVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT  280 (361)
T ss_dssp             B-CSCCEECSSEEE-EEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred             e-EEEecccCCEEE-EEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence            1 111223333333 345678999999875532  222111           1112236889997765443 2       


Q ss_pred             ----CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccC--eeEEeecCCCcCEEEEEEcC
Q 018784          207 ----GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG--EQIGCNKGHHGPVHCVRFSP  280 (350)
Q Consensus       207 ----~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~--~~~~~~~~h~~~v~~l~~sp  280 (350)
                          ...|.+||+.+.+.+..+..+. ...+.+.++ +++|++++. +.|.+||..++  +.+..+..+....+.++++|
T Consensus       281 ~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spd-g~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p  357 (361)
T 2oiz_A          281 HKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQ-RNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHP  357 (361)
T ss_dssp             TTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETT-TTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECC
T ss_pred             ccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCC-CCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecC
Confidence                2479999999999999888877 777778774 667776666 99999999999  99888877778889999999


Q ss_pred             CCC
Q 018784          281 GGE  283 (350)
Q Consensus       281 ~~~  283 (350)
                      +|.
T Consensus       358 ~G~  360 (361)
T 2oiz_A          358 VGG  360 (361)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            985

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.72  E-value=4.9e-15  Score=132.40  Aligned_cols=256  Identities=13%  Similarity=0.079  Sum_probs=163.2

Q ss_pred             CceeEEEecccCCCccEEEEEe---------CCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCC---C-
Q 018784           17 RPVVDLFYSPITPDGFFLVSAS---------KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---F-   83 (350)
Q Consensus        17 ~~v~~~~~~~~s~dg~~lasgs---------~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D---g-   83 (350)
                      ..+....+     ||+.+|...         .++.+.+|+..+++.. .+    ..+..++|+|+|+.++..+.+   + 
T Consensus        15 ~~~~~~~~-----dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~   84 (347)
T 2gop_A           15 AYLSDPRT-----KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKV   84 (347)
T ss_dssp             CEEEEEEE-----ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTE
T ss_pred             EEcccceE-----CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCc
Confidence            34555554     677766542         2567889999888754 34    567889999999988877654   3 


Q ss_pred             -eEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCC---------------------------CeEEEEECCCCC
Q 018784           84 -TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE---------------------------KILRIFDLNRPD  135 (350)
Q Consensus        84 -~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d---------------------------~~v~vwd~~~~~  135 (350)
                       .|.+||+.+++......+.. +..++|+|+++.|+.++.+                           ..|.+||+.++.
T Consensus        85 ~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~  163 (347)
T 2gop_A           85 SEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE  163 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE
T ss_pred             ceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe
Confidence             37777888776665555555 9999999999988887642                           568899987654


Q ss_pred             CCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC-------eEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEE-EcC
Q 018784          136 APPREVGNSSGSIRTVAWLHSDQTILSSCTDSG-------GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADG  207 (350)
Q Consensus       136 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg-------~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~  207 (350)
                      .......  . .+..+.|++++  +++++..+.       ...+|.+.+++....... ..+..  ++|+|++++. +.+
T Consensus       164 ~~~~l~~--~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~-~~~~~--~spdg~~l~~~~~~  235 (347)
T 2gop_A          164 VIEEFEK--P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK-VSFYA--VDSDGERILLYGKP  235 (347)
T ss_dssp             EEEEEEE--E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE-ESEEE--EEECSSCEEEEECC
T ss_pred             EEeeecC--C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCCceEEeccC-cceee--ECCCCCEEEEEEcc
Confidence            3112222  2 66788888755  666665432       334443335543322222 33433  3999987654 322


Q ss_pred             --------CcEEEEECCCcceeeeeecCCCC-ce-eEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEE
Q 018784          208 --------SSVKFWDANHFGLVKGYNMPCNT-ES-ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVR  277 (350)
Q Consensus       208 --------~~i~vwd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~  277 (350)
                              ..|.+||  +............. .. ..+.  ++ ++++++.++.++|| +.+++.. .+..+...|.+++
T Consensus       236 ~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s--dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~  308 (347)
T 2gop_A          236 EKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD--GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFD  308 (347)
T ss_dssp             SSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET--TE-EEEEEEETTEEEEE-EESSSEE-EEECSSSEEEEEE
T ss_pred             ccCCccccceEEEEC--CCceEeccccCCcccCCccEEc--Cc-EEEEEecCCcEEEE-EcCCceE-EEecCCCeEEeee
Confidence                    3578888  33322211111111 22 3343  45 88899999999999 8866553 3444577899999


Q ss_pred             EcCCCCEEEEecCCCcE-EEecCC
Q 018784          278 FSPGGESYASGSEDGTI-RIWQTN  300 (350)
Q Consensus       278 ~sp~~~~lasgs~Dg~v-~vw~~~  300 (350)
                      |+|  .++++++.++.. .||.++
T Consensus       309 ~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          309 VDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             ESS--SEEEEEECSSSCCEEEEES
T ss_pred             eeC--cEEEEEcCCCChHHheEeC
Confidence            999  677777777654 777664

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.71  E-value=5e-13  Score=116.33  Aligned_cols=274  Identities=9%  Similarity=0.001  Sum_probs=188.8

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceee-eccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG-TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~-~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      ..+...+.++++++   +|.+.++...++.+.+|+.. ++... .+..+...+..+++++++.++++...++.|..||..
T Consensus        11 ~~~~~~~~~i~~d~---~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~   86 (299)
T 2z2n_A           11 TNQDTGPYGITVSD---KGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK   86 (299)
T ss_dssp             CSSSCCEEEEEECT---TSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CCcCCCccceEECC---CCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence            45567889998886   89888877778899999987 65543 233455778999999999998888778999999976


Q ss_pred             CCCeee-eee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe
Q 018784           92 TGDEKH-SFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (350)
Q Consensus        92 ~~~~~~-~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~  169 (350)
                       +.... .+. ....+..+++.+++.+.++...++.|.+||. ++.............+..+++.+ ++.++++...++.
T Consensus        87 -g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~  163 (299)
T 2z2n_A           87 -GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNA  163 (299)
T ss_dssp             -SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTE
T ss_pred             -CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCE
Confidence             33221 121 3456899999999988888777889999998 33222111122345677888764 4567777666789


Q ss_pred             EEEEECCCCceeEe-ec-CCCCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceeeeeecC---CCCceeEecCCCCcEE
Q 018784          170 VRLWDARSGKIVQT-LE-TKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMP---CNTESASLEPKLGNIF  243 (350)
Q Consensus       170 i~iwd~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l  243 (350)
                      |..||. +++.... +. ....+..++++++++++++.. ++.|..||. +... ..+..+   ..+..+.+.+ +++++
T Consensus       164 i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~~~-~g~l~  239 (299)
T 2z2n_A          164 IGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI-TEFKIPTPNARPHAITAGA-GIDLW  239 (299)
T ss_dssp             EEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE-EEEECSSTTCCEEEEEECS-TTCEE
T ss_pred             EEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE-EEEECCCCCCCceeEEECC-CCCEE
Confidence            999998 6665432 22 234578899999998877664 578999998 5443 233333   2233344444 47788


Q ss_pred             EEecCCCeEEEEEcccCeeEEe-ecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          244 IAGGEDMWVHVFDFHTGEQIGC-NKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       244 ~sg~~d~~i~v~d~~~~~~~~~-~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      ++...++.|..||. ++..... +..+...+.++++ +++.++++.+. +.|..++..
T Consensus       240 v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~-~~l~~~~~~  294 (299)
T 2z2n_A          240 FTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMEC-DKIGKLTLI  294 (299)
T ss_dssp             EEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETT-TEEEEEEEC
T ss_pred             EeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecC-CcEEEEEcC
Confidence            87777899999998 4543322 3345567999999 99988777664 455555543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.71  E-value=1.4e-15  Score=138.09  Aligned_cols=239  Identities=10%  Similarity=0.018  Sum_probs=157.1

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEE--ECCCCcEEEE------------
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC--LDANALFSAS------------   78 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~--~~~~~~~l~s------------   78 (350)
                      .+|...+..+.|+|   ||+.|+.++.++.+++||+.+++....+..+...+....  +++++.+++.            
T Consensus        77 ~~~~~~~~~~~~sp---dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~  153 (388)
T 3pe7_A           77 EGRGDNTFGGFLSP---DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLT  153 (388)
T ss_dssp             CSSCBCSSSCEECT---TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred             eCCCCCccceEEcC---CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccccccc
Confidence            45665665666775   999999999999999999999988776666666554333  4899998874            


Q ss_pred             ----------eeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcC-CCCeEEEeeCC------CeEEEEECCCCCCCCeee
Q 018784           79 ----------GSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE-DTHLLLTGGFE------KILRIFDLNRPDAPPREV  141 (350)
Q Consensus        79 ----------~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~sg~~d------~~v~vwd~~~~~~~~~~~  141 (350)
                                .+.+..|.+||+.+++......+...+..++|+| +++.|+....+      ..|.++|+.....  ..+
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~--~~l  231 (388)
T 3pe7_A          154 DWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM--RKV  231 (388)
T ss_dssp             SHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC--EES
T ss_pred             ccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce--EEe
Confidence                      2355789999999988766667777899999999 99988776653      3677778764322  222


Q ss_pred             cCCC--CcEEEEEEeCCCCcEEEEEeCCC----eEEEEECCCCceeEeecCCCC------eEEEEEecCCcEEEE-----
Q 018784          142 GNSS--GSIRTVAWLHSDQTILSSCTDSG----GVRLWDARSGKIVQTLETKSP------VTSAEVSRDGRYITT-----  204 (350)
Q Consensus       142 ~~~~--~~v~~~~~~~~~~~~~~s~~~dg----~i~iwd~~~~~~~~~~~~~~~------v~~~~~~~~~~~l~~-----  204 (350)
                      ..+.  ..+..+.|++++..++.....++    .|.+||+.+++..........      .....|+|+|+.|+.     
T Consensus       232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  311 (388)
T 3pe7_A          232 KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDD  311 (388)
T ss_dssp             CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------
T ss_pred             eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeec
Confidence            2222  35777889987776755544322    399999998874322221110      111368999987653     


Q ss_pred             -----EcCCcEEEEECCCcceeeeeecCC-----------CCceeEecCCCCcEEE-EecCCCeEEEEEc
Q 018784          205 -----ADGSSVKFWDANHFGLVKGYNMPC-----------NTESASLEPKLGNIFI-AGGEDMWVHVFDF  257 (350)
Q Consensus       205 -----~~~~~i~vwd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~-sg~~d~~i~v~d~  257 (350)
                           ..+..|.+||+.+.....-.....           ......+.++ ++.|+ ++..++...||.+
T Consensus       312 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spD-g~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          312 SGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPD-DKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             -----CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTT-SSEEEEEECTTSSCEEEEE
T ss_pred             cccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCC-CCEEEEEecCCCceeEEEE
Confidence                 234579999998765433222222           2334556664 55444 5555776666654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.71  E-value=2.1e-15  Score=147.78  Aligned_cols=271  Identities=10%  Similarity=-0.027  Sum_probs=176.3

Q ss_pred             CCccEEEEEeCCC---CeeEee--CCCCceeeec------cCccCCeEEEEECCCCcEEE-----EeeCCCeEEEeeCCC
Q 018784           29 PDGFFLVSASKDS---SPMLRN--GETGDWIGTF------EGHKGAVWSCCLDANALFSA-----SGSADFTAKLWDALT   92 (350)
Q Consensus        29 ~dg~~lasgs~d~---~v~iw~--~~~~~~~~~l------~gH~~~V~~v~~~~~~~~l~-----s~s~Dg~v~vWd~~~   92 (350)
                      |+|.+++-...++   .-.||.  ...++....+      ++|...+..++|+|||+++|     +|+.+..|++||+.+
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t  156 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS  156 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence            5888877766654   344554  3344433222      35766789999999999988     566678999999998


Q ss_pred             CCee-ee-eeccccEeEEEEcCCCCeEEEeeCCCe-------------EEEEECCCCCCCCeee---cCCCCcEEEEEEe
Q 018784           93 GDEK-HS-FEHKHIVRACAFSEDTHLLLTGGFEKI-------------LRIFDLNRPDAPPREV---GNSSGSIRTVAWL  154 (350)
Q Consensus        93 ~~~~-~~-~~h~~~V~~~~~~~~~~~l~sg~~d~~-------------v~vwd~~~~~~~~~~~---~~~~~~v~~~~~~  154 (350)
                      ++.+ .. +... ....++|+|||+.|+.++.|..             |++|++.++.......   ..+...+..+.|+
T Consensus       157 g~~~~~~~~~~~-~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S  235 (695)
T 2bkl_A          157 GEWSKVDVIEGG-KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS  235 (695)
T ss_dssp             CCBCSSCCBSCC-TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC
T ss_pred             CCCcCCcccCcc-cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC
Confidence            8764 21 1111 1267899999999999988776             9999998654322222   2234568889999


Q ss_pred             CCCCcEEEEEeCC-C--eEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEc----CCcEEEEECCCcce--eeeee
Q 018784          155 HSDQTILSSCTDS-G--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD----GSSVKFWDANHFGL--VKGYN  225 (350)
Q Consensus       155 ~~~~~~~~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~~i~vwd~~~~~~--~~~~~  225 (350)
                      +++..++++...+ +  .|.+||..+++...............+ +++.+++.++    +..|.+||+.+...  .+.+.
T Consensus       236 pDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~  314 (695)
T 2bkl_A          236 RDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIV  314 (695)
T ss_dssp             TTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEE
T ss_pred             CCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEe
Confidence            8777776665443 2  677777666654333333334444445 5666555443    46799999876542  12222


Q ss_pred             cCC-C--CceeEecCCCCcEEEEecCCCeEEEEEcc-cCeeEEeecCC-CcCEEEEEEcCCCCEEE----EecCCCcEEE
Q 018784          226 MPC-N--TESASLEPKLGNIFIAGGEDMWVHVFDFH-TGEQIGCNKGH-HGPVHCVRFSPGGESYA----SGSEDGTIRI  296 (350)
Q Consensus       226 ~~~-~--~~~~~~~~~~~~~l~sg~~d~~i~v~d~~-~~~~~~~~~~h-~~~v~~l~~sp~~~~la----sgs~Dg~v~v  296 (350)
                      .+. .  .....+.  .+.++++...|+..+||.+. ++..+..+..+ .+.|..++++|+++.++    +....++|++
T Consensus       315 ~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~  392 (695)
T 2bkl_A          315 PEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYK  392 (695)
T ss_dssp             CCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEE
T ss_pred             cCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEE
Confidence            211 1  1223333  56788899999988888665 46556666555 66788899999987766    3445688999


Q ss_pred             ecCCCCC
Q 018784          297 WQTNPPN  303 (350)
Q Consensus       297 w~~~~~~  303 (350)
                      ||+...+
T Consensus       393 ~d~~~g~  399 (695)
T 2bkl_A          393 TSVSTGK  399 (695)
T ss_dssp             EETTTCC
T ss_pred             EECCCCc
Confidence            9987654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.70  E-value=2.6e-14  Score=125.08  Aligned_cols=238  Identities=10%  Similarity=0.023  Sum_probs=166.8

Q ss_pred             eccCCceeEEEecccCCCcc-EEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784           13 HGHSRPVVDLFYSPITPDGF-FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~-~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      ..+.....+++|+|   +|+ +++++..++.|..|+..++  ...+..+...+.++++++++.++++...++.|.+||..
T Consensus        24 ~~~~~~~eg~~~d~---~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           24 ADGFTWTEGPVYVP---ARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             ECCCSSEEEEEEEG---GGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             ecCCccccCCeEeC---CCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            34556667888887   887 8888999999999999877  56677788889999999999999888888999999997


Q ss_pred             CCCeeeeeec-----cccEeEEEEcCCCCeEEE----eeC-------------CCeEEEEECCCCCCCCeeecCCCCcEE
Q 018784           92 TGDEKHSFEH-----KHIVRACAFSEDTHLLLT----GGF-------------EKILRIFDLNRPDAPPREVGNSSGSIR  149 (350)
Q Consensus        92 ~~~~~~~~~h-----~~~V~~~~~~~~~~~l~s----g~~-------------d~~v~vwd~~~~~~~~~~~~~~~~~v~  149 (350)
                      +++.......     ...+..+++.|+|+++++    |..             .+.|..++.. +  .............
T Consensus        99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g--~~~~~~~~~~~~~  175 (296)
T 3e5z_A           99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G--TLSAPIRDRVKPN  175 (296)
T ss_dssp             TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S--CEEEEECCCSSEE
T ss_pred             CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C--CEEEeecCCCCCc
Confidence            7765443321     234678999999998887    331             2345555543 2  2223334455678


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEECC-CCce---eEeec-CCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeee
Q 018784          150 TVAWLHSDQTILSSCTDSGGVRLWDAR-SGKI---VQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY  224 (350)
Q Consensus       150 ~~~~~~~~~~~~~s~~~dg~i~iwd~~-~~~~---~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~  224 (350)
                      .++|++++..+ ++...++.|.+||+. +++.   ...+. ....+..++++++|+++++. ++.|.+||.. ++.+..+
T Consensus       176 gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~~~  252 (296)
T 3e5z_A          176 GLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELGRV  252 (296)
T ss_dssp             EEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEEEE
T ss_pred             cEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEEEE
Confidence            89988766555 888888999999987 4544   22221 22345678999999988777 7889999986 5566666


Q ss_pred             ecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCee
Q 018784          225 NMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (350)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~  262 (350)
                      ..+.....+.+..++++.|.+++.+ .+..++..+.+.
T Consensus       253 ~~~~~~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~  289 (296)
T 3e5z_A          253 LTPQTTSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL  289 (296)
T ss_dssp             ECSSCCCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred             ECCCCceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence            6655555556644456666666655 455555555443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.70  E-value=9.6e-15  Score=143.46  Aligned_cols=244  Identities=9%  Similarity=-0.048  Sum_probs=159.2

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCC-----CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCe----
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDS-----SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFT----   84 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~-----~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~----   84 (350)
                      +|+..+..++|||   ||++||.++.++     +|++||+.+++.+.....+. .+..++|+||++.|+.++.|+.    
T Consensus       122 ~~~~~~~~~~~SP---Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~  197 (710)
T 2xdw_A          122 DGTVALRGYAFSE---DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKS  197 (710)
T ss_dssp             TSCEEEEEEEECT---TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCC
T ss_pred             CCCEEEEEEEECC---CCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCc-ccceEEEEeCCCEEEEEEECCccccc
Confidence            4555677777775   999998776544     89999999998875332222 2567899999999988888876    


Q ss_pred             ------------EEEeeCCCCCee--eeee---ccccEeEEEEcCCCCeEEEeeC-----CCeEEEEECCC------CCC
Q 018784           85 ------------AKLWDALTGDEK--HSFE---HKHIVRACAFSEDTHLLLTGGF-----EKILRIFDLNR------PDA  136 (350)
Q Consensus        85 ------------v~vWd~~~~~~~--~~~~---h~~~V~~~~~~~~~~~l~sg~~-----d~~v~vwd~~~------~~~  136 (350)
                                  |++|++.++...  ..+.   |...+..+.|+|+|++|+..+.     +..|.+||+.+      +..
T Consensus       198 ~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~  277 (710)
T 2xdw_A          198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL  277 (710)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred             cccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence                        999999877632  2222   3455789999999999887664     67899999875      332


Q ss_pred             CCeeecCCCCcEEEEEEeCCCCcEEEEEeCC---CeEEEEECCCCce--eEeecCC-C--CeEEEEEecCCcEEEEEcCC
Q 018784          137 PPREVGNSSGSIRTVAWLHSDQTILSSCTDS---GGVRLWDARSGKI--VQTLETK-S--PVTSAEVSRDGRYITTADGS  208 (350)
Q Consensus       137 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d---g~i~iwd~~~~~~--~~~~~~~-~--~v~~~~~~~~~~~l~~~~~~  208 (350)
                      ....+..+...+.. .|+++++.+++.+..+   ..|.+||+.++..  ...+..+ .  .+..+.+++++         
T Consensus       278 ~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------  347 (710)
T 2xdw_A          278 KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN---------  347 (710)
T ss_dssp             CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT---------
T ss_pred             ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC---------
Confidence            33333334444433 3666666666665443   3688999877631  2222221 1  23344444333         


Q ss_pred             cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCe--EEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEE
Q 018784          209 SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMW--VHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYA  286 (350)
Q Consensus       209 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~--i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~la  286 (350)
                                                      .++++...|+.  |++||+.+|+.+..+..+.+.|..++++|+++.++
T Consensus       348 --------------------------------~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~  395 (710)
T 2xdw_A          348 --------------------------------FLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF  395 (710)
T ss_dssp             --------------------------------EEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred             --------------------------------EEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence                                            33444444442  44556556666666666777788999999987654


Q ss_pred             -Eec---CCCcEEEecCCCCC
Q 018784          287 -SGS---EDGTIRIWQTNPPN  303 (350)
Q Consensus       287 -sgs---~Dg~v~vw~~~~~~  303 (350)
                       +.+   ..++|++||+...+
T Consensus       396 ~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          396 YQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEECSSCCCEEEEEETTSSS
T ss_pred             EEEeCCCCCCEEEEEECCCCc
Confidence             322   45789999987654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.69  E-value=2.4e-14  Score=124.22  Aligned_cols=189  Identities=12%  Similarity=0.069  Sum_probs=134.5

Q ss_pred             CccEEEEEeCCCCeeEeeCCCCceeeeccCcc-CCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeecc--ccEe
Q 018784           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHK-GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHK--HIVR  106 (350)
Q Consensus        30 dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~-~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~--~~V~  106 (350)
                      .+++|++++.|+.|.+||.++|+.+..+..|. ..+..+.+.|+|+++++  .++.|..||. +++.+..+...  ..+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            47899999999999999999999999998876 47888999999999994  5888999999 88888877642  4688


Q ss_pred             EEEEcCCCCeEEEeeC-CCeEEEEECCCCCCCCeeec-----CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCce
Q 018784          107 ACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPREVG-----NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI  180 (350)
Q Consensus       107 ~~~~~~~~~~l~sg~~-d~~v~vwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~  180 (350)
                      ++.+.++|+++++.+. ++.+..+|.. ++.......     .+......+... +++.++++...++.|..||.. |+.
T Consensus        81 ~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~~~~~~v~~~-~~G~~lv~~~~~~~v~~~d~~-G~~  157 (276)
T 3no2_A           81 TARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPHAQFRQINKN-KKGNYLVPLFATSEVREIAPN-GQL  157 (276)
T ss_dssp             EEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGGGSCSCCEEC-TTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             ccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCcccccccCceEC-CCCCEEEEecCCCEEEEECCC-CCE
Confidence            9999999999998877 7777777653 222111110     011122223333 355677777778888888877 888


Q ss_pred             eEeecCCCCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceeeee
Q 018784          181 VQTLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGY  224 (350)
Q Consensus       181 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~~~  224 (350)
                      +..+........+.+.+++.+++++. ++.|..+|..+++.+..+
T Consensus       158 ~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~  202 (276)
T 3no2_A          158 LNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRV  202 (276)
T ss_dssp             EEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEE
T ss_pred             EEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEe
Confidence            77777655555566667776665544 345666666655555444

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.69  E-value=1.9e-13  Score=130.03  Aligned_cols=283  Identities=12%  Similarity=0.047  Sum_probs=191.9

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCeeEeeCC--CCceeeeccCccCCeEEEEEC----CCCcEEEEe-eCCCeEEEeeC
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGE--TGDWIGTFEGHKGAVWSCCLD----ANALFSASG-SADFTAKLWDA   90 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~--~~~~~~~l~gH~~~V~~v~~~----~~~~~l~s~-s~Dg~v~vWd~   90 (350)
                      .+..+.|+|   ||++|.+++.|+.|.+||..  +++.+.++..... -..++++    |+|++++.+ -.+++|.|+|.
T Consensus       198 ~p~~v~~Sp---DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~  273 (567)
T 1qks_A          198 AVHISRLSA---SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG  273 (567)
T ss_dssp             CEEEEEECT---TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEET
T ss_pred             CccceEECC---CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEEC
Confidence            455777775   99999999999999999995  8888877765433 4688999    699876655 45599999999


Q ss_pred             CCCCeeeeee-----------ccc-cEeEEEEcCCCCe-EEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCC
Q 018784           91 LTGDEKHSFE-----------HKH-IVRACAFSEDTHL-LLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD  157 (350)
Q Consensus        91 ~~~~~~~~~~-----------h~~-~V~~~~~~~~~~~-l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (350)
                      .+.+.+..+.           |.. .+..+.+++++.. +++...++.|.++|....................+.|.+++
T Consensus       274 ~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdg  353 (567)
T 1qks_A          274 ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSH  353 (567)
T ss_dssp             TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTS
T ss_pred             CCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCC
Confidence            9888776553           222 5778888887654 45556779999999865331111111223456678888877


Q ss_pred             CcEEEEEeCCCeEEEEECCCCceeEeecC-C---CCeEEE-EEecCC-cEEEEEc--CCcEEEEECCC-------cceee
Q 018784          158 QTILSSCTDSGGVRLWDARSGKIVQTLET-K---SPVTSA-EVSRDG-RYITTAD--GSSVKFWDANH-------FGLVK  222 (350)
Q Consensus       158 ~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~---~~v~~~-~~~~~~-~~l~~~~--~~~i~vwd~~~-------~~~~~  222 (350)
                      ..+++++..+++|.++|+.+++.+..+.. .   .+-... .+.|++ .+++++.  ++.|.++|..+       .+.++
T Consensus       354 r~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~  433 (567)
T 1qks_A          354 RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILD  433 (567)
T ss_dssp             CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred             CEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEE
Confidence            77777887788999999999988776654 2   111122 257874 4555553  47899999887       66777


Q ss_pred             eeecCCCC-ceeEecCCCCcEEEEecC------CCeEEEEEcccC-----eeE-Eeec--------CCCcCEEEEEEcCC
Q 018784          223 GYNMPCNT-ESASLEPKLGNIFIAGGE------DMWVHVFDFHTG-----EQI-GCNK--------GHHGPVHCVRFSPG  281 (350)
Q Consensus       223 ~~~~~~~~-~~~~~~~~~~~~l~sg~~------d~~i~v~d~~~~-----~~~-~~~~--------~h~~~v~~l~~sp~  281 (350)
                      .+...... ..+..+|+...+++....      .+.|.+||+.+.     ... ..+.        .-...+..+.|+|+
T Consensus       434 ~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (567)
T 1qks_A          434 SFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKD  513 (567)
T ss_dssp             EEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTT
T ss_pred             EEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCC
Confidence            76654332 334455543344444321      358999999877     211 2221        12346899999999


Q ss_pred             CCEEEEec-----CCCcEEEecCCCCCc
Q 018784          282 GESYASGS-----EDGTIRIWQTNPPNH  304 (350)
Q Consensus       282 ~~~lasgs-----~Dg~v~vw~~~~~~~  304 (350)
                      |+.+..+.     .++.|.|+|..+.+.
T Consensus       514 G~~~~~s~~~~~~~~~~i~v~D~~t~~~  541 (567)
T 1qks_A          514 GTEVWFSVWNGKDQESALVVVDDKTLEL  541 (567)
T ss_dssp             SSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             CCEEEEEeecCCCCCCcEEEEECCCceE
Confidence            98865442     378999999876554

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.68  E-value=5.9e-14  Score=120.76  Aligned_cols=239  Identities=10%  Similarity=-0.070  Sum_probs=156.4

Q ss_pred             ceeEEEecccCCCccEEE-EEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCee
Q 018784           18 PVVDLFYSPITPDGFFLV-SASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK   96 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~la-sgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~   96 (350)
                      ...++++++   +|++.+ +.+.++.|.+|+..+.........+...+.++++++++.++++.. ++.|.+||.......
T Consensus        25 ~p~~i~~~~---~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~  100 (270)
T 1rwi_B           25 SPSGVAVDS---AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT  100 (270)
T ss_dssp             CEEEEEECT---TCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE
T ss_pred             CccceEECC---CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe
Confidence            567788875   888777 557788999999766554332233445677899999999877766 899999998665433


Q ss_pred             eee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEEC
Q 018784           97 HSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA  175 (350)
Q Consensus        97 ~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~  175 (350)
                      ... .....+..+++.+++.++++...++.|.+|+..+.... .........+..+++.+ ++.++++...++.|.+||.
T Consensus       101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~  178 (270)
T 1rwi_B          101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT-VLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEA  178 (270)
T ss_dssp             ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE-ECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEECT
T ss_pred             eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE-eeccccCCCceeEEEeC-CCCEEEEECCCCEEEEEec
Confidence            221 22356899999999998887777889999976432211 11111223456777765 4457777766789999998


Q ss_pred             CCCceeEeecC-CCCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEE
Q 018784          176 RSGKIVQTLET-KSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVH  253 (350)
Q Consensus       176 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~  253 (350)
                      ........... ...+..++++++|.++++.. ++.|.+||....                                   
T Consensus       179 ~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~-----------------------------------  223 (270)
T 1rwi_B          179 ESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST-----------------------------------  223 (270)
T ss_dssp             TTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS-----------------------------------
T ss_pred             CCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC-----------------------------------
Confidence            76654332222 24566777777776555543 445666654321                                   


Q ss_pred             EEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCc
Q 018784          254 VFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNH  304 (350)
Q Consensus       254 v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~  304 (350)
                             ........+...+.++++.|+|+++++.+.+++|++++...+++
T Consensus       224 -------~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          224 -------TSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             -------CCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             -------cceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence                   11111112234688999999999999999999999999865544

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.67  E-value=4.7e-14  Score=125.52  Aligned_cols=239  Identities=7%  Similarity=-0.018  Sum_probs=170.2

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH   97 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~   97 (350)
                      ....+.+.    ++++.++...+++|.+||..+++.+.++.. ......+++++++.+.++...++.|.+||..+++...
T Consensus        45 ~~~~i~~~----~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~  119 (328)
T 3dsm_A           45 VAQSMVIR----DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITG  119 (328)
T ss_dssp             CEEEEEEE----TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEE
T ss_pred             cceEEEEE----CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEE
Confidence            45667664    566777777789999999999999888853 3567888998888777776689999999999887666


Q ss_pred             eeeccc------cEeEEEEcCCCCeEEEee-CCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC---
Q 018784           98 SFEHKH------IVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS---  167 (350)
Q Consensus        98 ~~~h~~------~V~~~~~~~~~~~l~sg~-~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d---  167 (350)
                      .+.-..      .+..+++ .++.++++.. .++.|.+||+.+.+..... . .......+.+.+ ++++++++..+   
T Consensus       120 ~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i-~-~g~~p~~i~~~~-dG~l~v~~~~~~~~  195 (328)
T 3dsm_A          120 YIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDEL-T-IGIQPTSLVMDK-YNKMWTITDGGYEG  195 (328)
T ss_dssp             EEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEE-E-CSSCBCCCEECT-TSEEEEEBCCBCTT
T ss_pred             EEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEE-E-cCCCccceEEcC-CCCEEEEECCCccC
Confidence            554333      5667777 3444444433 4899999999865432222 1 122344566654 55677766554   


Q ss_pred             -------CeEEEEECCCCceeEeecC--CCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecC---CCCceeEe
Q 018784          168 -------GGVRLWDARSGKIVQTLET--KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP---CNTESASL  235 (350)
Q Consensus       168 -------g~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~---~~~~~~~~  235 (350)
                             +.|.++|..+++....+..  ......++++|+++.+..++. .|.+||..+.+.......+   ..+..+.+
T Consensus       196 ~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~v  274 (328)
T 3dsm_A          196 SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTV  274 (328)
T ss_dssp             CSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEE
T ss_pred             CccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEE
Confidence                   7899999999988777654  236789999999988877665 8999999876653221111   23455667


Q ss_pred             cCCCCcEEEEe----cCCCeEEEEEcccCeeEEeec
Q 018784          236 EPKLGNIFIAG----GEDMWVHVFDFHTGEQIGCNK  267 (350)
Q Consensus       236 ~~~~~~~l~sg----~~d~~i~v~d~~~~~~~~~~~  267 (350)
                      .|..+.++++.    ..++.|.+||.. ++.+..+.
T Consensus       275 dp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          275 NPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             CTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred             cCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence            77678888988    778999999998 88776654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.67  E-value=1.1e-13  Score=123.21  Aligned_cols=215  Identities=19%  Similarity=0.153  Sum_probs=143.4

Q ss_pred             cCCeEEEEECCCCcEEEEeeCC------------------------CeEEEeeCCCCCeeeeee--ccccEeEEEEcCCC
Q 018784           61 KGAVWSCCLDANALFSASGSAD------------------------FTAKLWDALTGDEKHSFE--HKHIVRACAFSEDT  114 (350)
Q Consensus        61 ~~~V~~v~~~~~~~~l~s~s~D------------------------g~v~vWd~~~~~~~~~~~--h~~~V~~~~~~~~~  114 (350)
                      -+.+.++++++++.++++.+.+                        ++|.+||..+++....+.  +-..+..++++|++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            3678999999999999988877                        479999998888766554  33468999999999


Q ss_pred             CeEEEeeCCCeEEEEECCCCCCCCeee---------cCCCCcEEEEEEeCCCCcEEEEEe-CCCeEEEEECCCCceeEee
Q 018784          115 HLLLTGGFEKILRIFDLNRPDAPPREV---------GNSSGSIRTVAWLHSDQTILSSCT-DSGGVRLWDARSGKIVQTL  184 (350)
Q Consensus       115 ~~l~sg~~d~~v~vwd~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~s~~-~dg~i~iwd~~~~~~~~~~  184 (350)
                      +++++...++.|++||...........         ..+...+..+++.+.++.++++.+ .++.|++|| .+++.+..+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence            988888889999999986432123322         123346888998875777888875 688999999 556655444


Q ss_pred             cCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEE
Q 018784          185 ETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG  264 (350)
Q Consensus       185 ~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~  264 (350)
                      .....                 +.      .....   .+   ..+..+.+.+..+.++++...++.|++||..+|+.+.
T Consensus       182 ~~~g~-----------------~~------~~~~~---~~---~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~  232 (329)
T 3fvz_A          182 GEESS-----------------GS------SPRPG---QF---SVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVR  232 (329)
T ss_dssp             CEECC-----------------SS------SCCTT---EE---SCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             ccCCC-----------------CC------CCCCc---cc---CCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEE
Confidence            21100                 00      00000   00   0122334444335666777777778888877777766


Q ss_pred             eec--CCCcCEEEEEEcC------CCCEEEEecCCCcEEEecCCCCCcc
Q 018784          265 CNK--GHHGPVHCVRFSP------GGESYASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       265 ~~~--~h~~~v~~l~~sp------~~~~lasgs~Dg~v~vw~~~~~~~~  305 (350)
                      .+.  .+...+.+++|+|      ++..+++.+.+..|++|+....+..
T Consensus       233 ~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~  281 (329)
T 3fvz_A          233 EIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEII  281 (329)
T ss_dssp             EECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEE
T ss_pred             EEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEE
Confidence            653  4566788999999      4444444445668999998665544

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.67  E-value=1.5e-13  Score=120.19  Aligned_cols=232  Identities=11%  Similarity=0.046  Sum_probs=157.5

Q ss_pred             eeeeccCccCCeEEEEECCCCc-EEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEEC
Q 018784           53 WIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL  131 (350)
Q Consensus        53 ~~~~l~gH~~~V~~v~~~~~~~-~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~  131 (350)
                      .+..+..+.....+++|++++. +++++..++.|..|+..++ ......+...+.+++++|+++++++...++.|.+||.
T Consensus        19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~   97 (296)
T 3e5z_A           19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE   97 (296)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred             cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence            3344555566678899999998 7888889999999999877 3333345667899999999998888777899999998


Q ss_pred             CCCCCCCeeec---CCCCcEEEEEEeCCCCcEEEE----Ee-------------CCCeEEEEECCCCceeEeecCCCCeE
Q 018784          132 NRPDAPPREVG---NSSGSIRTVAWLHSDQTILSS----CT-------------DSGGVRLWDARSGKIVQTLETKSPVT  191 (350)
Q Consensus       132 ~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~s----~~-------------~dg~i~iwd~~~~~~~~~~~~~~~v~  191 (350)
                      .++........   .....+..+++.+ ++.++++    ++             ..+.|..+|.. ++............
T Consensus        98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~  175 (296)
T 3e5z_A           98 PGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPN  175 (296)
T ss_dssp             TTCCEEEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEE
T ss_pred             CCCcEEEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCc
Confidence            65442211101   1112345677765 5567766    22             12466666665 55444444455678


Q ss_pred             EEEEecCCcEEEEEc-CCcEEEEECC-Ccce---eeeeec-CCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEe
Q 018784          192 SAEVSRDGRYITTAD-GSSVKFWDAN-HFGL---VKGYNM-PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGC  265 (350)
Q Consensus       192 ~~~~~~~~~~l~~~~-~~~i~vwd~~-~~~~---~~~~~~-~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~  265 (350)
                      .++|+|+++++++.. ++.|.+||+. .+..   .+.+.. ...+..+.+.+ +++++++.  ++.|.+||.. ++.+..
T Consensus       176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~~-g~~~~~  251 (296)
T 3e5z_A          176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDA-GGLIWASA--GDGVHVLTPD-GDELGR  251 (296)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBT-TSCEEEEE--TTEEEEECTT-SCEEEE
T ss_pred             cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECC-CCCEEEEc--CCeEEEECCC-CCEEEE
Confidence            899999999885544 5789999986 3332   122211 11223445554 47777766  7889999986 777777


Q ss_pred             ecCCCcCEEEEEE-cCCCCEEEEecCCC
Q 018784          266 NKGHHGPVHCVRF-SPGGESYASGSEDG  292 (350)
Q Consensus       266 ~~~h~~~v~~l~~-sp~~~~lasgs~Dg  292 (350)
                      +..+.. +.+++| +|+++.|+.++.++
T Consensus       252 ~~~~~~-~~~~~f~~~d~~~L~v~t~~~  278 (296)
T 3e5z_A          252 VLTPQT-TSNLCFGGPEGRTLYMTVSTE  278 (296)
T ss_dssp             EECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred             EECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence            777777 999999 68988888887764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.66  E-value=2.2e-15  Score=136.87  Aligned_cols=254  Identities=11%  Similarity=-0.039  Sum_probs=158.0

Q ss_pred             EeeCCCCceeeeccCccCC-----eEEEEECCCCcEEEEeeCC---CeEEEeeCCCCCeeeeeeccccEe-EEEEcCCCC
Q 018784           45 LRNGETGDWIGTFEGHKGA-----VWSCCLDANALFSASGSAD---FTAKLWDALTGDEKHSFEHKHIVR-ACAFSEDTH  115 (350)
Q Consensus        45 iw~~~~~~~~~~l~gH~~~-----V~~v~~~~~~~~l~s~s~D---g~v~vWd~~~~~~~~~~~h~~~V~-~~~~~~~~~  115 (350)
                      +.|..+++.+..+..+...     +..++|+|+|++++....+   ..|.+||+.+++......+...+. .+.|+|+++
T Consensus        14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~   93 (396)
T 3c5m_A           14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER   93 (396)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS
T ss_pred             eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC
Confidence            4567788777777665443     6677899999987765433   468888988776544444433333 378999999


Q ss_pred             eEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEE---E----------------EEeCCCCcEEEEE----eCCCeEEE
Q 018784          116 LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRT---V----------------AWLHSDQTILSSC----TDSGGVRL  172 (350)
Q Consensus       116 ~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~---~----------------~~~~~~~~~~~s~----~~dg~i~i  172 (350)
                      .|+.++.++.|.+||+..+.... ....+......   +                .|++.+..+++..    ..+..|.+
T Consensus        94 ~l~~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~  172 (396)
T 3c5m_A           94 AFFYVKNELNLMKVDLETLEEQV-IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK  172 (396)
T ss_dssp             EEEEEETTTEEEEEETTTCCEEE-EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred             EEEEEEcCCcEEEEECCCCCcEE-EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence            99999999999999997654321 11212221111   1                2233232222211    35568999


Q ss_pred             EECCCCceeEeecCCCCeEEEEEec-CCcEEE-EEcC------CcEEEEECCCcceeeeeecC-C-CCceeEecCCCCcE
Q 018784          173 WDARSGKIVQTLETKSPVTSAEVSR-DGRYIT-TADG------SSVKFWDANHFGLVKGYNMP-C-NTESASLEPKLGNI  242 (350)
Q Consensus       173 wd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~-~~~~------~~i~vwd~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~  242 (350)
                      ||+.+++..........+..+.|+| +++.++ .+.+      ..|.+||+............ . ......+.+ +++.
T Consensus       173 ~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp-dg~~  251 (396)
T 3c5m_A          173 VDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP-DGSA  251 (396)
T ss_dssp             EETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT-TSSC
T ss_pred             EECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECC-CCCE
Confidence            9999888766555666788999999 777544 3332      36888888654422211110 1 122345555 4665


Q ss_pred             EEEecCC-----CeEEEEEcccCeeEEeecCCCcCEEEEEEcC-CCCEEEEec----------------CCCcEEEecCC
Q 018784          243 FIAGGED-----MWVHVFDFHTGEQIGCNKGHHGPVHCVRFSP-GGESYASGS----------------EDGTIRIWQTN  300 (350)
Q Consensus       243 l~sg~~d-----~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp-~~~~lasgs----------------~Dg~v~vw~~~  300 (350)
                      |+..+.+     +.|++||+.+++....... .. .. +.|+| +++++++++                .+..|++||+.
T Consensus       252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~  328 (396)
T 3c5m_A          252 MAYVSYFKGQTDRVIYKANPETLENEEVMVM-PP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK  328 (396)
T ss_dssp             EEEEEEETTTCCEEEEEECTTTCCEEEEEEC-CS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred             EEEEecCCCCccceEEEEECCCCCeEEeeeC-CC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence            5555433     4599999988765432221 11 23 89999 999888754                34789999986


Q ss_pred             CCC
Q 018784          301 PPN  303 (350)
Q Consensus       301 ~~~  303 (350)
                      ...
T Consensus       329 ~~~  331 (396)
T 3c5m_A          329 AKS  331 (396)
T ss_dssp             TTB
T ss_pred             cCc
Confidence            543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.66  E-value=1.1e-12  Score=118.76  Aligned_cols=269  Identities=12%  Similarity=0.040  Sum_probs=178.3

Q ss_pred             CCccEEEEEeC--CC---CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEee----------CCCeEEEeeCCCC
Q 018784           29 PDGFFLVSASK--DS---SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS----------ADFTAKLWDALTG   93 (350)
Q Consensus        29 ~dg~~lasgs~--d~---~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s----------~Dg~v~vWd~~~~   93 (350)
                      |+++++.....  ..   +|.++|..+++.+.++..-..+  .++++||+++++.+.          .+++|.+||..+.
T Consensus        30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~  107 (373)
T 2mad_H           30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF  107 (373)
T ss_pred             CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence            57776665543  22   7899999999998888754444  789999999888765          3788999999888


Q ss_pred             Ceeeeeecc--------ccEeEEEEcCCCCeEEEeeC--CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEE
Q 018784           94 DEKHSFEHK--------HIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (350)
Q Consensus        94 ~~~~~~~h~--------~~V~~~~~~~~~~~l~sg~~--d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s  163 (350)
                      +....+.-.        .....++|+|+|++|+++..  ++.|.++| .+.+....... ..+   ++.+.+.+...+++
T Consensus       108 ~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~-~~~---~~~~~~~~~~~~~~  182 (373)
T 2mad_H          108 LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS-SPT---CYHIHPGAPSTFYL  182 (373)
T ss_pred             cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC-CCc---eEEEEeCCCceEEE
Confidence            766655321        23568999999999998874  57899999 76543222021 112   23445556566667


Q ss_pred             EeCCCeEEEEECCCCceeEeec------CCCCe-EEEEEecCC-cEEEEEcCCcEEEEECCCcc--eeeeeec-------
Q 018784          164 CTDSGGVRLWDARSGKIVQTLE------TKSPV-TSAEVSRDG-RYITTADGSSVKFWDANHFG--LVKGYNM-------  226 (350)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~~~~------~~~~v-~~~~~~~~~-~~l~~~~~~~i~vwd~~~~~--~~~~~~~-------  226 (350)
                      ...||++.++|. +++......      ...++ ....+.+++ .++..+..+.+.+.|+....  .+..+..       
T Consensus       183 ~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~  261 (373)
T 2mad_H          183 LCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKA  261 (373)
T ss_pred             EcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccc
Confidence            778899999999 887663322      11121 223345443 44555566788999986542  2222221       


Q ss_pred             ----CCCCceeEecCCCCcEEEEec---------CCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCC-EEEEec-CC
Q 018784          227 ----PCNTESASLEPKLGNIFIAGG---------EDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGE-SYASGS-ED  291 (350)
Q Consensus       227 ----~~~~~~~~~~~~~~~~l~sg~---------~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~-~lasgs-~D  291 (350)
                          +.......+.++.++++++..         ..+.|.++|+.+++.+..+.. ....++++|+|||+ +++++. .+
T Consensus       262 ~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~  340 (373)
T 2mad_H          262 DTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGT  340 (373)
T ss_pred             cceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCC
Confidence                111122445554445555443         235799999999999887753 23589999999999 677777 58


Q ss_pred             CcEEEecCCCCCccc
Q 018784          292 GTIRIWQTNPPNHEE  306 (350)
Q Consensus       292 g~v~vw~~~~~~~~~  306 (350)
                      +.|.++|..+.+...
T Consensus       341 ~~V~ViD~~t~~vv~  355 (373)
T 2mad_H          341 EVLHIYDAGAGDQDQ  355 (373)
T ss_pred             CeEEEEECCCCCEEe
Confidence            999999987766543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.66  E-value=6.9e-13  Score=117.77  Aligned_cols=229  Identities=10%  Similarity=0.029  Sum_probs=156.5

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCC----CeEEE
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD----FTAKL   87 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D----g~v~v   87 (350)
                      +.+|...+.+++|+|   +|++++++..++.|.+||..+++....+..+...+.++++++++.++++...+    +.|.+
T Consensus        40 ~~~~~~~~~~~~~~~---~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~  116 (333)
T 2dg1_A           40 ISKKGLQLEGLNFDR---QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA  116 (333)
T ss_dssp             EESSCCCEEEEEECT---TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred             EeccCccccCcEECC---CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence            345666778888875   89988899999999999998888765554567889999999999988887776    78999


Q ss_pred             eeCCCCCeeeeee---ccccEeEEEEcCCCCeEEEeeC------CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCC
Q 018784           88 WDALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGGF------EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ  158 (350)
Q Consensus        88 Wd~~~~~~~~~~~---h~~~V~~~~~~~~~~~l~sg~~------d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~  158 (350)
                      ||..++.....+.   +...+..++++|+++++++...      .+.|..+|.....  ..........+..++|.+++.
T Consensus       117 ~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~i~~~~dg~  194 (333)
T 2dg1_A          117 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQNISVANGIALSTDEK  194 (333)
T ss_dssp             ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC--EEEEEEEESSEEEEEECTTSS
T ss_pred             EeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCE--EEEeecCCCcccceEECCCCC
Confidence            9988776543332   3456899999999988776653      2445555544322  122222233467888887666


Q ss_pred             cEEEEEeCCCeEEEEECCC-CceeEe--------ecCCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCC
Q 018784          159 TILSSCTDSGGVRLWDARS-GKIVQT--------LETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPC  228 (350)
Q Consensus       159 ~~~~s~~~dg~i~iwd~~~-~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~  228 (350)
                      .++++...++.|.+||+++ ++.+..        +.....+..++++++|+++++. .++.|.+||.. .+.+..+..+.
T Consensus       195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~  273 (333)
T 2dg1_A          195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPG  273 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTT
T ss_pred             EEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCC
Confidence            6777777778999999964 332221        1122357789999999887765 45789999984 55555555543


Q ss_pred             -------CCceeEecCCCCcEEEEec
Q 018784          229 -------NTESASLEPKLGNIFIAGG  247 (350)
Q Consensus       229 -------~~~~~~~~~~~~~~l~sg~  247 (350)
                             ....+.+.+ +++.|..++
T Consensus       274 ~~~g~~~~~~~~~~~~-dg~~L~v~~  298 (333)
T 2dg1_A          274 RDEGHMLRSTHPQFIP-GTNQLIICS  298 (333)
T ss_dssp             GGGTCSCBCCEEEECT-TSCEEEEEE
T ss_pred             CccccccCcceEEECC-CCCEEEEEe
Confidence                   244555654 344444333

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.65  E-value=1e-13  Score=124.43  Aligned_cols=269  Identities=15%  Similarity=0.136  Sum_probs=183.0

Q ss_pred             CCccEEEEEeC-----CCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEee----------CCCeEEEeeCCCC
Q 018784           29 PDGFFLVSASK-----DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS----------ADFTAKLWDALTG   93 (350)
Q Consensus        29 ~dg~~lasgs~-----d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s----------~Dg~v~vWd~~~~   93 (350)
                      |+++.+.....     ++.|.+.|..+++.+.++..-..+ . ++++|++++++.+.          .+++|.+||..+.
T Consensus        42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~  119 (386)
T 3sjl_D           42 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL  119 (386)
T ss_dssp             CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence            68877766654     678999999999999988754455 4 89999999776654          4688999999999


Q ss_pred             Ceeeeeecc--------ccEeEEEEcCCCCeEEEeeC--CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEE
Q 018784           94 DEKHSFEHK--------HIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (350)
Q Consensus        94 ~~~~~~~h~--------~~V~~~~~~~~~~~l~sg~~--d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s  163 (350)
                      +....+.-.        .....++|+|+|++++++..  ++.|.++|+.+.+.......  .+.   ....|.+.+.+++
T Consensus       120 ~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v--~g~---~~~~P~g~~~~~~  194 (386)
T 3sjl_D          120 LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV--PDC---YHIFPTAPDTFFM  194 (386)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC--CSE---EEEEEEETTEEEE
T ss_pred             eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC--CCc---ceeecCCCceeEE
Confidence            877766422        24567999999999988764  68999999986543322211  111   1223445555556


Q ss_pred             EeCCCeEEEEECCC-CceeEeecC-----CCCe-EEEEEe-cCCcEEEEEcCCcEEEEECCCcc--eeeeeec-------
Q 018784          164 CTDSGGVRLWDARS-GKIVQTLET-----KSPV-TSAEVS-RDGRYITTADGSSVKFWDANHFG--LVKGYNM-------  226 (350)
Q Consensus       164 ~~~dg~i~iwd~~~-~~~~~~~~~-----~~~v-~~~~~~-~~~~~l~~~~~~~i~vwd~~~~~--~~~~~~~-------  226 (350)
                      .+.||++.+.++.+ ++.......     ..++ ....|. ++|+++..+.++.|.+.|+.+..  .+.....       
T Consensus       195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~  274 (386)
T 3sjl_D          195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA  274 (386)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHH
T ss_pred             ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecccccccc
Confidence            67789999999976 665322211     1122 123454 78888777888999999986543  3333321       


Q ss_pred             ----CCCCceeEecCCCCcEEEEecC---------CCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCC-EEEE-ecCC
Q 018784          227 ----PCNTESASLEPKLGNIFIAGGE---------DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGE-SYAS-GSED  291 (350)
Q Consensus       227 ----~~~~~~~~~~~~~~~~l~sg~~---------d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~-~las-gs~D  291 (350)
                          +.......+.+..++++++-..         .+.|.++|+.+++.+..+..- ..+++|+|+||++ +|++ ...+
T Consensus       275 ~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~  353 (386)
T 3sjl_D          275 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGD  353 (386)
T ss_dssp             TTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTT
T ss_pred             ccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCC
Confidence                1222334555555566665321         257999999999988776521 2588999999986 5554 5568


Q ss_pred             CcEEEecCCCCCcc
Q 018784          292 GTIRIWQTNPPNHE  305 (350)
Q Consensus       292 g~v~vw~~~~~~~~  305 (350)
                      +.|.++|..+.+..
T Consensus       354 ~~VsViD~~t~k~~  367 (386)
T 3sjl_D          354 KTLYIHDAESGEEL  367 (386)
T ss_dssp             TEEEEEETTTCCEE
T ss_pred             CeEEEEECCCCcEE
Confidence            99999998766544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.64  E-value=1.5e-13  Score=119.44  Aligned_cols=196  Identities=12%  Similarity=0.213  Sum_probs=145.0

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeC-CCCeeEeeCCCCceeeecc-CccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASK-DSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~-d~~v~iw~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      +|...+.++++++  ++|.++++... ++.|++|+ .+++.+..+. .+...+..+++++++.++++...++.|.+||..
T Consensus        74 ~~~~~p~~i~~~~--~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~  150 (286)
T 1q7f_A           74 SQLLYPNRVAVVR--NSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN  150 (286)
T ss_dssp             TCBSSEEEEEEET--TTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred             ccccCceEEEEEc--CCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC
Confidence            4556788888842  37877777643 88999999 5677776664 345678999999999999988889999999964


Q ss_pred             CCCeeeeee---ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCC--CCcEEEEEEeCCCCcEEEEEeC
Q 018784           92 TGDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS--SGSIRTVAWLHSDQTILSSCTD  166 (350)
Q Consensus        92 ~~~~~~~~~---h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~s~~~  166 (350)
                       ++....+.   +...+..++++|+++++++...++.|++||... .. .......  ...+..+++.+ ++.++++...
T Consensus       151 -g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~-~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~  226 (286)
T 1q7f_A          151 -GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QY-LRQIGGEGITNYPIGVGINS-NGEILIADNH  226 (286)
T ss_dssp             -SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CE-EEEESCTTTSCSEEEEEECT-TCCEEEEECS
T ss_pred             -CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-CE-EEEEccCCccCCCcEEEECC-CCCEEEEeCC
Confidence             45555543   335689999999999888888899999999753 21 1222221  25678888876 4567777777


Q ss_pred             CC-eEEEEECCCCceeEeecCC---CCeEEEEEecCCcEEEEEcCCcEEEEECCC
Q 018784          167 SG-GVRLWDARSGKIVQTLETK---SPVTSAEVSRDGRYITTADGSSVKFWDANH  217 (350)
Q Consensus       167 dg-~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~  217 (350)
                      ++ .|.+||. +++.+..+...   ..+..++++|+|+++++..++.|++|+...
T Consensus       227 ~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~  280 (286)
T 1q7f_A          227 NNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ  280 (286)
T ss_dssp             SSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred             CCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence            75 9999995 56666655432   236789999999988887788999998754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.63  E-value=1.4e-11  Score=107.23  Aligned_cols=271  Identities=8%  Similarity=-0.003  Sum_probs=184.8

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceee-eccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG-TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~-~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~   92 (350)
                      .....+.++++++   +|.+.++...++.|.+++.. ++... .+..+...+..+++++++.+.++...++.|..+|.. 
T Consensus        17 ~~~~~p~~i~~d~---~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-   91 (300)
T 2qc5_A           17 IPDSGPYGITSSE---DGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-   91 (300)
T ss_dssp             STTCCEEEEEECT---TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             CCCCCcceeeECC---CCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-
Confidence            3456788898876   89888887788999999987 66543 334445678999999999988887778999999987 


Q ss_pred             CCeeee-ee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784           93 GDEKHS-FE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (350)
Q Consensus        93 ~~~~~~-~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i  170 (350)
                      ++.... +. ....+.++++.+++.+.++...++.|..||.. +.............+..+++.+ ++.++++...++.|
T Consensus        92 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i  169 (300)
T 2qc5_A           92 GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGS-DNALWFTENQNNSI  169 (300)
T ss_dssp             SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSSEEEEETTTTEE
T ss_pred             CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECC-CCCEEEEecCCCeE
Confidence            544322 11 23568999999999988877778899999876 3322111222345677888765 45577776667899


Q ss_pred             EEEECCCCceeEee-c-CCCCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceeeeeecC---CCCceeEecCCCCcEEE
Q 018784          171 RLWDARSGKIVQTL-E-TKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMP---CNTESASLEPKLGNIFI  244 (350)
Q Consensus       171 ~iwd~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~  244 (350)
                      ..+|. +++..... . ....+..++++++++++++.. .+.|.+||. +.... .+..+   ..+..+.+.+ ++++++
T Consensus       170 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~d~-~g~l~v  245 (300)
T 2qc5_A          170 GRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEIS-EYDIPTPNARPHAITAGK-NSEIWF  245 (300)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECS-TTCEEE
T ss_pred             EEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEE-EEECCCCCCCceEEEECC-CCCEEE
Confidence            99998 55543321 1 234578899999998877765 457999998 33322 22222   1223344444 477888


Q ss_pred             EecCCCeEEEEEcccCeeEE-eecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          245 AGGEDMWVHVFDFHTGEQIG-CNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       245 sg~~d~~i~v~d~~~~~~~~-~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      +...++.|..||. +++... .+......+.++++.++|.++++.. . .|..++
T Consensus       246 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~  297 (300)
T 2qc5_A          246 TEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLN  297 (300)
T ss_dssp             EETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEE
T ss_pred             eccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeC
Confidence            8777899999998 454332 2333455688999999998777665 4 566555

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.63  E-value=3.8e-14  Score=138.89  Aligned_cols=238  Identities=10%  Similarity=-0.055  Sum_probs=152.0

Q ss_pred             ccCCceeEEEecccCCCccEEE-----EEeCCCCeeEeeCCCCceeeeccCccCCe--EEEEECCCCcEEEEeeCCCe--
Q 018784           14 GHSRPVVDLFYSPITPDGFFLV-----SASKDSSPMLRNGETGDWIGTFEGHKGAV--WSCCLDANALFSASGSADFT--   84 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~la-----sgs~d~~v~iw~~~~~~~~~~l~gH~~~V--~~v~~~~~~~~l~s~s~Dg~--   84 (350)
                      +|+..+..+.|||   ||++||     +|+.+.+|++||+.+++.+.  ..+...+  ..++|+||++.|+.++.|..  
T Consensus       118 ~~~~~~~~~~~SP---DG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~  192 (695)
T 2bkl_A          118 DGTVSLGTWAVSW---DGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPS  192 (695)
T ss_dssp             SSCEEEEEEEECT---TSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTT
T ss_pred             CCCEEEEEEEECC---CCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCC
Confidence            5666788888875   999998     56666789999999998751  1122222  56799999999999988877  


Q ss_pred             -----------EEEeeCCCCCe--eeeee---ccccEeEEEEcCCCCeEEEeeCCC----eEEEEECCCCCCCCeeecCC
Q 018784           85 -----------AKLWDALTGDE--KHSFE---HKHIVRACAFSEDTHLLLTGGFEK----ILRIFDLNRPDAPPREVGNS  144 (350)
Q Consensus        85 -----------v~vWd~~~~~~--~~~~~---h~~~V~~~~~~~~~~~l~sg~~d~----~v~vwd~~~~~~~~~~~~~~  144 (350)
                                 |++|++.++..  ...+.   +...+..+.|+|+|++|+..+.++    .|.+|+...+  ....+..+
T Consensus       193 ~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~--~~~~l~~~  270 (695)
T 2bkl_A          193 IKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEK--DFRLLVKG  270 (695)
T ss_dssp             SCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCS--SCEEEEEC
T ss_pred             CccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCC--ceEEeecC
Confidence                       99999988763  22222   445788999999999998877665    5666655332  23333334


Q ss_pred             CCcEEEEEEeCCCCcEEEEEe---CCCeEEEEECCCCce---eEeecC--CCCeEEEEEecCCcEEEE-EcCCcEEEEEC
Q 018784          145 SGSIRTVAWLHSDQTILSSCT---DSGGVRLWDARSGKI---VQTLET--KSPVTSAEVSRDGRYITT-ADGSSVKFWDA  215 (350)
Q Consensus       145 ~~~v~~~~~~~~~~~~~~s~~---~dg~i~iwd~~~~~~---~~~~~~--~~~v~~~~~~~~~~~l~~-~~~~~i~vwd~  215 (350)
                      ...+....+ ++++ +++...   .++.|.+||+.+++.   ...+..  ...+..+.++ ++.++++ ..++..++|..
T Consensus       271 ~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~  347 (695)
T 2bkl_A          271 VGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVA  347 (695)
T ss_dssp             SSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred             CCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence            444555555 4555 666554   257899999987753   222322  3357778887 5555554 45676666644


Q ss_pred             C-CcceeeeeecCCCC--ceeEecCCCCcEEE-E---ecCCCeEEEEEcccCee
Q 018784          216 N-HFGLVKGYNMPCNT--ESASLEPKLGNIFI-A---GGEDMWVHVFDFHTGEQ  262 (350)
Q Consensus       216 ~-~~~~~~~~~~~~~~--~~~~~~~~~~~~l~-s---g~~d~~i~v~d~~~~~~  262 (350)
                      . .++..+.+..+...  ....+.+ ++..++ +   ....++|++||+.+++.
T Consensus       348 ~~~g~~~~~l~~~~~~~v~~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          348 TLKGKPVRTVQLPGVGAASNLMGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             ETTCCEEEECCCSSSSEECCCBSCT-TCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             eCCCCeeEEecCCCCeEEEEeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            3 23344444443221  2233444 344444 3   33457899999988764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.61  E-value=1.3e-12  Score=114.85  Aligned_cols=239  Identities=13%  Similarity=0.133  Sum_probs=152.6

Q ss_pred             ccCCceeEEEecccCCCccEEEE-------EeCCCCeeEeeCCCCceeeecc----CccCCeEEEEECCC-CcEEEEeeC
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVS-------ASKDSSPMLRNGETGDWIGTFE----GHKGAVWSCCLDAN-ALFSASGSA   81 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~las-------gs~d~~v~iw~~~~~~~~~~l~----gH~~~V~~v~~~~~-~~~l~s~s~   81 (350)
                      +......+++|++   +|.++++       ++.++.|.+|+..+++......    ++...+..++++++ +.++++.. 
T Consensus        15 ~~~~~~~~~~~~~---~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-   90 (314)
T 1pjx_A           15 EDIPGAEGPVFDK---NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-   90 (314)
T ss_dssp             CCCTTCEEEEECT---TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-
T ss_pred             ccCCCccCceECC---CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-
Confidence            3344567888875   8888888       6778999999988887653222    36677899999999 87766654 


Q ss_pred             CCeEEEeeCCCCCeeee-ee-----ccccEeEEEEcCCCCeEEEeeCC---------------CeEEEEECCCCCCCCee
Q 018784           82 DFTAKLWDALTGDEKHS-FE-----HKHIVRACAFSEDTHLLLTGGFE---------------KILRIFDLNRPDAPPRE  140 (350)
Q Consensus        82 Dg~v~vWd~~~~~~~~~-~~-----h~~~V~~~~~~~~~~~l~sg~~d---------------~~v~vwd~~~~~~~~~~  140 (350)
                      ...|.+||.. ++.... ..     ....+.++++.+++++.++...+               +.|..|+.. +.  ...
T Consensus        91 ~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~  166 (314)
T 1pjx_A           91 RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--MIQ  166 (314)
T ss_dssp             TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--EEE
T ss_pred             CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC--EEE
Confidence            3478899987 654433 22     12357899999999887776655               456666654 22  112


Q ss_pred             ecCCCCcEEEEEEe----CCCCcEEEEEeCCCeEEEEECC-CCce-----eEeecCC--CCeEEEEEecCCcEEEEEcCC
Q 018784          141 VGNSSGSIRTVAWL----HSDQTILSSCTDSGGVRLWDAR-SGKI-----VQTLETK--SPVTSAEVSRDGRYITTADGS  208 (350)
Q Consensus       141 ~~~~~~~v~~~~~~----~~~~~~~~s~~~dg~i~iwd~~-~~~~-----~~~~~~~--~~v~~~~~~~~~~~l~~~~~~  208 (350)
                      ..........+++.    ++++.++++...++.|.+||+. +++.     ...+...  .....++++++|         
T Consensus       167 ~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G---------  237 (314)
T 1pjx_A          167 VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN---------  237 (314)
T ss_dssp             EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC---------
T ss_pred             eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCC---------
Confidence            22222345677887    6555666776677899999975 3331     1111111  223334444444         


Q ss_pred             cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCC-EEEE
Q 018784          209 SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGE-SYAS  287 (350)
Q Consensus       209 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~-~las  287 (350)
                                                      +++++...++.|.+||..+++.+..+..+...+.+++|+|+++ ++++
T Consensus       238 --------------------------------~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~  285 (314)
T 1pjx_A          238 --------------------------------NLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVT  285 (314)
T ss_dssp             --------------------------------CEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             --------------------------------CEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEE
Confidence                                            4444444455566666554544444444556789999999998 5566


Q ss_pred             ecCCCcEEEecCCC
Q 018784          288 GSEDGTIRIWQTNP  301 (350)
Q Consensus       288 gs~Dg~v~vw~~~~  301 (350)
                      ...++.|..|+...
T Consensus       286 ~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          286 EHENNAVWKFEWQR  299 (314)
T ss_dssp             ETTTTEEEEEECSS
T ss_pred             eCCCCeEEEEeCCC
Confidence            67778999998754

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.60  E-value=5.3e-13  Score=131.70  Aligned_cols=273  Identities=12%  Similarity=0.032  Sum_probs=167.6

Q ss_pred             CCccEEEEEeCCCC---eeEeeC--C---CCceeee-----c-cCccCCeEEEEECCCCcEEEEeeCC-----CeEEEee
Q 018784           29 PDGFFLVSASKDSS---PMLRNG--E---TGDWIGT-----F-EGHKGAVWSCCLDANALFSASGSAD-----FTAKLWD   89 (350)
Q Consensus        29 ~dg~~lasgs~d~~---v~iw~~--~---~~~~~~~-----l-~gH~~~V~~v~~~~~~~~l~s~s~D-----g~v~vWd   89 (350)
                      |||++++-...++.   -.||..  .   .++....     + .+|...+..++|+|||+++|.++.+     ..|++||
T Consensus       116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d  195 (741)
T 1yr2_A          116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG  195 (741)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence            68888877665544   455653  2   3333221     1 3454567889999999988866544     4699999


Q ss_pred             CCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCe--------------EEEEECCCCCCCCeeec---CCCCcEEEEE
Q 018784           90 ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKI--------------LRIFDLNRPDAPPREVG---NSSGSIRTVA  152 (350)
Q Consensus        90 ~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~--------------v~vwd~~~~~~~~~~~~---~~~~~v~~~~  152 (350)
                      +.+++.+....+...+..++|+|+ +.|+.++.++.              |.+|++.++........   .+...+..+.
T Consensus       196 l~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~  274 (741)
T 1yr2_A          196 VADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGAS  274 (741)
T ss_dssp             TTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred             CCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEE
Confidence            999886543222222357899999 88888776554              88999875542212221   2223578888


Q ss_pred             EeCCCCcEEEEEeC----CCeEEEEECCCC--ceeEeec-CCCCeEEEEEecCCcEEEE-Ec----CCcEEEEECCCcc-
Q 018784          153 WLHSDQTILSSCTD----SGGVRLWDARSG--KIVQTLE-TKSPVTSAEVSRDGRYITT-AD----GSSVKFWDANHFG-  219 (350)
Q Consensus       153 ~~~~~~~~~~s~~~----dg~i~iwd~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~----~~~i~vwd~~~~~-  219 (350)
                      |++++..++++...    ...|++||+.++  ++...+. ........ +.|+|+.|+. ++    ...|.+||+.+.. 
T Consensus       275 ~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~  353 (741)
T 1yr2_A          275 VSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTP  353 (741)
T ss_dssp             ECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSC
T ss_pred             ECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCcc
Confidence            98766666655543    348999999876  4133443 33333333 3577776543 33    2459999987742 


Q ss_pred             eeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcc-cCeeEEeecC-CCcCEEEEEEcCCCCEEE----EecCCCc
Q 018784          220 LVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH-TGEQIGCNKG-HHGPVHCVRFSPGGESYA----SGSEDGT  293 (350)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~-~~~~~~~~~~-h~~~v~~l~~sp~~~~la----sgs~Dg~  293 (350)
                      ..+.+..........+....+.++++...|+..+||.+. ++.....+.. +.+.|..++++|+++.|+    +....++
T Consensus       354 ~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~  433 (741)
T 1yr2_A          354 RFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPAT  433 (741)
T ss_dssp             EEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEE
T ss_pred             ccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence            222222111111112222246788888889987777654 4555555654 366789999999987655    3345688


Q ss_pred             EEEecCCCCC
Q 018784          294 IRIWQTNPPN  303 (350)
Q Consensus       294 v~vw~~~~~~  303 (350)
                      |++||+...+
T Consensus       434 i~~~d~~tg~  443 (741)
T 1yr2_A          434 VLALDPATAK  443 (741)
T ss_dssp             EEEEETTTTE
T ss_pred             EEEEECCCCc
Confidence            9999987654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.56  E-value=7.5e-13  Score=118.10  Aligned_cols=231  Identities=11%  Similarity=0.040  Sum_probs=140.7

Q ss_pred             ceeEEEecccCCCccEEEEEeCCC---C--eeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCC----------
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDS---S--PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD----------   82 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~---~--v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D----------   82 (350)
                      .+..+.|+|   ||+.||..+.++   .  +.+|++.+++.......+ . +..++|+|+++.++.++.+          
T Consensus        60 ~~~~~~~Sp---Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~  134 (347)
T 2gop_A           60 NATMPRISP---DGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFE  134 (347)
T ss_dssp             SCEEEEECT---TSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC-------
T ss_pred             cCCCeEECC---CCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEE
Confidence            455666665   999998887643   3  777888888766544433 3 8999999999988877642          


Q ss_pred             -----------------CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCC-------eEEEEECCCCCCCC
Q 018784           83 -----------------FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK-------ILRIFDLNRPDAPP  138 (350)
Q Consensus        83 -----------------g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~-------~v~vwd~~~~~~~~  138 (350)
                                       ..|.+||+.+++.+..+... .+..++|+|++ +++++..+.       ...+|.+.++.  .
T Consensus       135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~--~  210 (347)
T 2gop_A          135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK--E  210 (347)
T ss_dssp             --CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE--E
T ss_pred             cccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc--e
Confidence                             57999999887663333334 78899999999 777776542       44555544222  2


Q ss_pred             eeecCCCCcEEEEEEeCCCCcEEEEEeCC-------CeEEEEECCCCceeEeecC-CCCeEE-EEEecCCcEEE-EEcCC
Q 018784          139 REVGNSSGSIRTVAWLHSDQTILSSCTDS-------GGVRLWDARSGKIVQTLET-KSPVTS-AEVSRDGRYIT-TADGS  208 (350)
Q Consensus       139 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-------g~i~iwd~~~~~~~~~~~~-~~~v~~-~~~~~~~~~l~-~~~~~  208 (350)
                      ..+..+ ..+..+  ++++..+++.+..+       ..|.+||  +++....... ...+.. +.|+ ++ +++ +..++
T Consensus       211 ~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~  283 (347)
T 2gop_A          211 EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEG  283 (347)
T ss_dssp             EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETT
T ss_pred             EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCC
Confidence            222222 444444  55555555554332       4688888  5554433333 345665 8898 88 554 45678


Q ss_pred             cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeE-EEEEcccCeeEEeecCCC
Q 018784          209 SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWV-HVFDFHTGEQIGCNKGHH  270 (350)
Q Consensus       209 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i-~v~d~~~~~~~~~~~~h~  270 (350)
                      .+++| +.+++...............+.+   .++++++.++.. ++|.+. ++ ...+..|.
T Consensus       284 ~~~l~-~~~g~~~~~~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n  340 (347)
T 2gop_A          284 SVNLY-IWDGEIKPIAKGRHWIMGFDVDE---IVVYLKETATRLRELFTWD-GE-EKQLTDYN  340 (347)
T ss_dssp             EEEEE-EESSSEEEEECSSSEEEEEEESS---SEEEEEECSSSCCEEEEES-SS-EEECCCTT
T ss_pred             cEEEE-EcCCceEEEecCCCeEEeeeeeC---cEEEEEcCCCChHHheEeC-Cc-EEEecccc
Confidence            89999 76444332222222223344544   577777666654 677665 44 33444443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.54  E-value=8.4e-11  Score=102.11  Aligned_cols=235  Identities=8%  Similarity=-0.000  Sum_probs=165.1

Q ss_pred             ccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee--eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCC
Q 018784           57 FEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF--EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP  134 (350)
Q Consensus        57 l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~--~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~  134 (350)
                      +..+...+.++++++++.++++...++.|.+||.. +......  .+...+.++++.+++.+.++...++.|..||.. +
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g   87 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G   87 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence            45556788999999999998887778999999987 5433222  134678999999999988887778899999875 2


Q ss_pred             CCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEee-c-CCCCeEEEEEecCCcEEEEEc-CCcEE
Q 018784          135 DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-E-TKSPVTSAEVSRDGRYITTAD-GSSVK  211 (350)
Q Consensus       135 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~-~~~i~  211 (350)
                      .............+..+++.+ ++.++++...++.|..||. +++..... . ....+..+++.++++++++.. ++.|.
T Consensus        88 ~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  165 (299)
T 2z2n_A           88 IIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG  165 (299)
T ss_dssp             CEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             cEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence            211111112345677888765 5567777667789999998 55543322 2 235678899999998887765 57899


Q ss_pred             EEECCCcceeeeeecCC---CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEe-ecCCCcCEEEEEEcCCCCEEEE
Q 018784          212 FWDANHFGLVKGYNMPC---NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGC-NKGHHGPVHCVRFSPGGESYAS  287 (350)
Q Consensus       212 vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~-~~~h~~~v~~l~~sp~~~~las  287 (350)
                      .||. +.... .+..+.   ....+.+.+ +++++++...++.|.+||. +++.... ...+...+.++++.++|.++++
T Consensus       166 ~~~~-~g~~~-~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~  241 (299)
T 2z2n_A          166 RITE-SGDIT-EFKIPTPASGPVGITKGN-DDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFT  241 (299)
T ss_dssp             EECT-TCCEE-EEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred             EEcC-CCcEE-EeeCCCCCCcceeEEECC-CCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEe
Confidence            9998 44433 222221   223344444 4778888777889999999 6654332 3345567999999999998887


Q ss_pred             ecCCCcEEEecC
Q 018784          288 GSEDGTIRIWQT  299 (350)
Q Consensus       288 gs~Dg~v~vw~~  299 (350)
                      ...++.|..|+.
T Consensus       242 ~~~~~~i~~~d~  253 (299)
T 2z2n_A          242 EWGANKIGRLTS  253 (299)
T ss_dssp             ETTTTEEEEEET
T ss_pred             ccCCceEEEECC
Confidence            777889999986

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.52  E-value=3.1e-12  Score=125.62  Aligned_cols=232  Identities=12%  Similarity=0.041  Sum_probs=139.5

Q ss_pred             CCccEEEEEeCCC-C--eeEee--CCCCceeeec------cCccCCeEEEEECCCCcEEEEeeCCC-----eEEEeeCCC
Q 018784           29 PDGFFLVSASKDS-S--PMLRN--GETGDWIGTF------EGHKGAVWSCCLDANALFSASGSADF-----TAKLWDALT   92 (350)
Q Consensus        29 ~dg~~lasgs~d~-~--v~iw~--~~~~~~~~~l------~gH~~~V~~v~~~~~~~~l~s~s~Dg-----~v~vWd~~~   92 (350)
                      |+|++++-...++ .  -.||-  ...++....+      ++|...+..++|+|||+++|.++.++     .|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            5787766554332 1  13444  3344432111      34555788999999999888655443     899999998


Q ss_pred             CCeeeeeeccccEeEEEEcCCCCeEEEeeCCCe----------------EEEEECCCCCCCCeee---cCCCCcEEEEEE
Q 018784           93 GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKI----------------LRIFDLNRPDAPPREV---GNSSGSIRTVAW  153 (350)
Q Consensus        93 ~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~----------------v~vwd~~~~~~~~~~~---~~~~~~v~~~~~  153 (350)
                      ++..........+..++|+||++.|+.++.++.                |++|++.++.......   ..+...+..+.|
T Consensus       161 g~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~  240 (710)
T 2xdw_A          161 AKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL  240 (710)
T ss_dssp             TEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE
T ss_pred             CCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE
Confidence            876553222223678999999999998887766                9999997654221222   223445778899


Q ss_pred             eCCCCcEEEEEeC----CCeEEEEECCC------Cc-eeEeecCC-CCeEEEEEecCCcEEEEE-cCCcEEEEECCCcce
Q 018784          154 LHSDQTILSSCTD----SGGVRLWDARS------GK-IVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGL  220 (350)
Q Consensus       154 ~~~~~~~~~s~~~----dg~i~iwd~~~------~~-~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~  220 (350)
                      +++++.++++...    +..|.+||+.+      +. ....+..+ .... ..++++|..++.. +.+            
T Consensus       241 SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~s~~~------------  307 (710)
T 2xdw_A          241 SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFKTNRH------------  307 (710)
T ss_dssp             CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEEECTT------------
T ss_pred             cCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEE-EEEeccCCEEEEEECCC------------
Confidence            8877766665542    56899999876      42 23333322 2222 2355555443221 100            


Q ss_pred             eeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCe--eEEeecCCCc--CEEEEEEcCCCCEEEEecCCCcE--
Q 018784          221 VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE--QIGCNKGHHG--PVHCVRFSPGGESYASGSEDGTI--  294 (350)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~--~~~~~~~h~~--~v~~l~~sp~~~~lasgs~Dg~v--  294 (350)
                                                .....|.+||+.++.  ....+..|..  .+..++|++++.++++...|+..  
T Consensus       308 --------------------------~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l  361 (710)
T 2xdw_A          308 --------------------------SPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTL  361 (710)
T ss_dssp             --------------------------CTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEE
T ss_pred             --------------------------CCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEE
Confidence                                      012345566665543  1233334433  57788998888888999999865  


Q ss_pred             EEecC
Q 018784          295 RIWQT  299 (350)
Q Consensus       295 ~vw~~  299 (350)
                      ++|++
T Consensus       362 ~~~~~  366 (710)
T 2xdw_A          362 QLHDL  366 (710)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            45555

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.51  E-value=2.5e-11  Score=111.20  Aligned_cols=249  Identities=12%  Similarity=0.044  Sum_probs=154.3

Q ss_pred             CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCC--eEEEeeCCCCC
Q 018784           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF--TAKLWDALTGD   94 (350)
Q Consensus        17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg--~v~vWd~~~~~   94 (350)
                      .....|+|++   +|+++++...++.|++||.++++.......... .. +++++++..++.+..++  .|.+|+...+.
T Consensus       131 ~~P~~la~d~---~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          131 KYMWGIAAVG---NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             CCEEEEEECS---TTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred             CCceEEEEeC---CCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence            4567888875   899888888889999999988877655544322 33 89999999888887766  78889887665


Q ss_pred             eeeee----e-ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee---ecCCCCcE-E-EEEEeCCCCcEEEEE
Q 018784           95 EKHSF----E-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE---VGNSSGSI-R-TVAWLHSDQTILSSC  164 (350)
Q Consensus        95 ~~~~~----~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~---~~~~~~~v-~-~~~~~~~~~~~~~s~  164 (350)
                      ....+    . ....+.+++++|++..|+.+..++.|..||+.........   ........ . .+++.+.++.++++.
T Consensus       206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d  285 (409)
T 3hrp_A          206 APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD  285 (409)
T ss_dssp             CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred             eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence            43333    2 3456789999995555655777889999998754321110   11111111 3 788887778888888


Q ss_pred             eCCCeEEEEECCCCceeEeecCC---------------CCeEEEEEecCCcEEEEEc--CCcEEEEECCCcceeeeeecC
Q 018784          165 TDSGGVRLWDARSGKIVQTLETK---------------SPVTSAEVSRDGRYITTAD--GSSVKFWDANHFGLVKGYNMP  227 (350)
Q Consensus       165 ~~dg~i~iwd~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~l~~~~--~~~i~vwd~~~~~~~~~~~~~  227 (350)
                      ...+.|+.||.... ........               .....++++++|+++++..  ++.|+.||+.++.. ..+...
T Consensus       286 ~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~  363 (409)
T 3hrp_A          286 QNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQ  363 (409)
T ss_dssp             TTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEEC
T ss_pred             CCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCC
Confidence            88889999987533 21111110               2245566666666544433  34566665433221 111000


Q ss_pred             CCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          228 CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       228 ~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                      ...              .|..|+          .   .....-.....+++.|++.++++-..+++|+.+.+
T Consensus       364 ~~~--------------~g~~~g----------~---~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          364 VDV--------------ASQIDG----------T---PLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTC--------------BSCCCB----------S---TTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCC--------------CCcCCC----------C---hhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            000              000000          0   00011245889999999999999999999988754

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.49  E-value=7.2e-12  Score=114.37  Aligned_cols=270  Identities=16%  Similarity=0.123  Sum_probs=178.2

Q ss_pred             CCccEEEEEeC-C----CCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEee----------CCCeEEEeeCCCC
Q 018784           29 PDGFFLVSASK-D----SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS----------ADFTAKLWDALTG   93 (350)
Q Consensus        29 ~dg~~lasgs~-d----~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s----------~Dg~v~vWd~~~~   93 (350)
                      ++++.+..... +    ++|.+.|..+++.+.++.--..+  .++++||+++++.+.          .++.|.++|..++
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            45654444433 3    68999999999999988754455  789999998776664          4789999999999


Q ss_pred             Ceeeeeecc--------ccEeEEEEcCCCCeEEEeeC--CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEE
Q 018784           94 DEKHSFEHK--------HIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS  163 (350)
Q Consensus        94 ~~~~~~~h~--------~~V~~~~~~~~~~~l~sg~~--d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s  163 (350)
                      +....+.-.        .....++|+|++++|+++..  ++.|.+.|+.+.+.......  .+.   ....+.+...+++
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v--~g~---~~~~p~g~~~~v~  234 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV--PDC---YHIFPASPTVFYM  234 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC--CSE---EEEEEEETTEEEE
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc--CCc---eeeccCCCcEEEE
Confidence            877665422        23567899999999998864  58899999986543322211  111   2223344456666


Q ss_pred             EeCCCeEEEEECCCCceeEe----ecCC-CC-eEEEEEecCCcE-EEEEcCCcEEEEECCCcce--eeeeec--------
Q 018784          164 CTDSGGVRLWDARSGKIVQT----LETK-SP-VTSAEVSRDGRY-ITTADGSSVKFWDANHFGL--VKGYNM--------  226 (350)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~~----~~~~-~~-v~~~~~~~~~~~-l~~~~~~~i~vwd~~~~~~--~~~~~~--------  226 (350)
                      ...||++.+.+..+++....    +... .+ ...+.+.+++.. ++....+.+.+.|......  +..+..        
T Consensus       235 ~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~  314 (426)
T 3c75_H          235 NCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERAD  314 (426)
T ss_dssp             EETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGG
T ss_pred             EcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccc
Confidence            67788988888866665432    1111 11 123456777654 4455667899999864332  122211        


Q ss_pred             ---CCCCceeEecCCCCcEEEEec---------CCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCC-EEEEec-CCC
Q 018784          227 ---PCNTESASLEPKLGNIFIAGG---------EDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGE-SYASGS-EDG  292 (350)
Q Consensus       227 ---~~~~~~~~~~~~~~~~l~sg~---------~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~-~lasgs-~Dg  292 (350)
                         +.......+.+..++++++..         ..+.|.++|+.+++.+.++..- ...+.+.|+||++ ++++.. .++
T Consensus       315 g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~  393 (426)
T 3c75_H          315 DWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQ  393 (426)
T ss_dssp             TEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTT
T ss_pred             ccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCC
Confidence               111122455555455566543         1357999999999988877522 2478999999998 777777 599


Q ss_pred             cEEEecCCCCCccc
Q 018784          293 TIRIWQTNPPNHEE  306 (350)
Q Consensus       293 ~v~vw~~~~~~~~~  306 (350)
                      .|.++|+.+.+...
T Consensus       394 ~VsVID~~t~kvv~  407 (426)
T 3c75_H          394 TLHIYDAATGEELR  407 (426)
T ss_dssp             EEEEEETTTCCEEE
T ss_pred             eEEEEECCCCCEEE
Confidence            99999998776553

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.44  E-value=2.5e-11  Score=109.02  Aligned_cols=251  Identities=14%  Similarity=0.073  Sum_probs=164.1

Q ss_pred             EEecccCCCccEEEEEe----------CCCCeeEeeCCCCceeeeccCcc-------CCeEEEEECCCCcEEEEeeC--C
Q 018784           22 LFYSPITPDGFFLVSAS----------KDSSPMLRNGETGDWIGTFEGHK-------GAVWSCCLDANALFSASGSA--D   82 (350)
Q Consensus        22 ~~~~~~s~dg~~lasgs----------~d~~v~iw~~~~~~~~~~l~gH~-------~~V~~v~~~~~~~~l~s~s~--D   82 (350)
                      ++++|   ||++|..++          .++.|.+||..+.+.+.++.-..       ..-..+++++||+++..+..  +
T Consensus        83 va~sp---DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~  159 (386)
T 3sjl_D           83 PVVAD---DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA  159 (386)
T ss_dssp             EEECT---TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred             EEECC---CCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC
Confidence            77775   998876665          36789999999999988774211       12345789999998777653  6


Q ss_pred             CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee----cCCCCcEE-EEEEeCCC
Q 018784           83 FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV----GNSSGSIR-TVAWLHSD  157 (350)
Q Consensus        83 g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~----~~~~~~v~-~~~~~~~~  157 (350)
                      ++|.++|+.+++.+.++.-.+.  ...+......+++.+.||.+.+.++..........    ......+. ...|...+
T Consensus       160 ~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~d  237 (386)
T 3sjl_D          160 PAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA  237 (386)
T ss_dssp             CEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTT
T ss_pred             CeEEEEECCCCcEEEEEECCCc--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCC
Confidence            8999999999988877754432  12232234556677778888888876422211100    00011111 13455556


Q ss_pred             CcEEEEEeCCCeEEEEECCCCc--eeEeec-----------CCCCeEEEEEecCCcEEEEEc-----------CCcEEEE
Q 018784          158 QTILSSCTDSGGVRLWDARSGK--IVQTLE-----------TKSPVTSAEVSRDGRYITTAD-----------GSSVKFW  213 (350)
Q Consensus       158 ~~~~~s~~~dg~i~iwd~~~~~--~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~-----------~~~i~vw  213 (350)
                      ++++.. +.+|+|.+.|+.++.  .+..+.           .......+.++++++.+....           ...|.++
T Consensus       238 G~~~~v-s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~vi  316 (386)
T 3sjl_D          238 GRLVWP-TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVL  316 (386)
T ss_dssp             TEEEEE-BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred             CcEEEE-eCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEE
Confidence            665554 446899999997664  332222           012334577788887665432           2469999


Q ss_pred             ECCCcceeeeeecCCCCceeEecCCCC-cEEEEecCCCeEEEEEcccCeeEEeec--CCCcCEEEEEEcCC
Q 018784          214 DANHFGLVKGYNMPCNTESASLEPKLG-NIFIAGGEDMWVHVFDFHTGEQIGCNK--GHHGPVHCVRFSPG  281 (350)
Q Consensus       214 d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sg~~d~~i~v~d~~~~~~~~~~~--~h~~~v~~l~~sp~  281 (350)
                      |+.+++.++.+........+.+.++.. .++++...++.|.++|..+++.+.++.  +|.   ..|.+++|
T Consensus       317 D~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p---~~l~~s~d  384 (386)
T 3sjl_D          317 DAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG---PQVITTAD  384 (386)
T ss_dssp             ETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSS---CCEEEECC
T ss_pred             ECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCC---ceeEECCc
Confidence            999999999888776666777877543 345556679999999999999988775  343   44556655

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.44  E-value=1.3e-11  Score=121.67  Aligned_cols=243  Identities=10%  Similarity=-0.005  Sum_probs=144.3

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCC-----CCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCe---
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKD-----SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFT---   84 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d-----~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~---   84 (350)
                      .+|+..+..+.|||   ||++||.++.+     .+|++||+.+++.+.. ..+...+..++|+|| +.|+.++.|+.   
T Consensus       159 ~~~~~~~~~~~~SP---DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~  233 (741)
T 1yr2_A          159 KDGATALDAWAASD---DGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEG  233 (741)
T ss_dssp             ----EEEEEEEECT---TSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC---
T ss_pred             cCCCEEEEeEEECC---CCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccc
Confidence            34545667777775   99999887654     4599999999988653 112222346789999 88887777654   


Q ss_pred             -----------EEEeeCCCCCe--eeeee---ccccEeEEEEcCCCCeEEEeeCCC-----eEEEEECCCCCCC-Ceeec
Q 018784           85 -----------AKLWDALTGDE--KHSFE---HKHIVRACAFSEDTHLLLTGGFEK-----ILRIFDLNRPDAP-PREVG  142 (350)
Q Consensus        85 -----------v~vWd~~~~~~--~~~~~---h~~~V~~~~~~~~~~~l~sg~~d~-----~v~vwd~~~~~~~-~~~~~  142 (350)
                                 |++|++.++..  ...+.   +...+..+.|+|+|++|+..+.++     .|.+||+.++... ...+.
T Consensus       234 ~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~  313 (741)
T 1yr2_A          234 QAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI  313 (741)
T ss_dssp             -----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE
T ss_pred             cccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec
Confidence                       89999877652  22332   223588999999999888776543     8999998765212 23333


Q ss_pred             CCCCcEEEEEEeCCCCcEEEEEeC---CCeEEEEECCCC--ceeEeecCC-CCeEEEEEecCCcEEEE-EcCCcEEEEEC
Q 018784          143 NSSGSIRTVAWLHSDQTILSSCTD---SGGVRLWDARSG--KIVQTLETK-SPVTSAEVSRDGRYITT-ADGSSVKFWDA  215 (350)
Q Consensus       143 ~~~~~v~~~~~~~~~~~~~~s~~~---dg~i~iwd~~~~--~~~~~~~~~-~~v~~~~~~~~~~~l~~-~~~~~i~vwd~  215 (350)
                      .+........ .+.++.+++....   ++.|.+||+.++  +....+... ..+..+.+. ++.++++ ..++..++|..
T Consensus       314 ~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~  391 (741)
T 1yr2_A          314 PDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAF  391 (741)
T ss_dssp             CSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred             CCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence            3333334443 3555555555432   346999999875  222233332 335566776 4455444 45666555543


Q ss_pred             C-CcceeeeeecCCCC--ceeEecCCCCcEEEEe---cCCCeEEEEEcccCee
Q 018784          216 N-HFGLVKGYNMPCNT--ESASLEPKLGNIFIAG---GEDMWVHVFDFHTGEQ  262 (350)
Q Consensus       216 ~-~~~~~~~~~~~~~~--~~~~~~~~~~~~l~sg---~~d~~i~v~d~~~~~~  262 (350)
                      . .++..+.+..+...  ....+.+....++++.   ...++|++||+.+++.
T Consensus       392 ~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          392 DLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             ETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             eCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            2 23444444443222  2334444333344333   3457899999988763

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.43  E-value=2.1e-09  Score=93.28  Aligned_cols=234  Identities=11%  Similarity=-0.004  Sum_probs=162.7

Q ss_pred             cCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeee-ee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCC
Q 018784           58 EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS-FE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD  135 (350)
Q Consensus        58 ~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~-~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~  135 (350)
                      ........++++++++.+.++...++.|.+||.. ++.... +. ....+.++++.+++.+.++...++.|..||.. +.
T Consensus        16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~   93 (300)
T 2qc5_A           16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG   93 (300)
T ss_dssp             SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence            3445678899999999998888888999999987 543321 21 23568999999999888877778899999976 33


Q ss_pred             CCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEe-ec-CCCCeEEEEEecCCcEEEEEc-CCcEEE
Q 018784          136 APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQT-LE-TKSPVTSAEVSRDGRYITTAD-GSSVKF  212 (350)
Q Consensus       136 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~-~~~i~v  212 (350)
                      ............+..+++.+ ++.++++...++.|..+|.. ++.... +. ....+..+++.++++++++.. ++.|..
T Consensus        94 ~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~  171 (300)
T 2qc5_A           94 FTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR  171 (300)
T ss_dssp             EEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEE
T ss_pred             eEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEE
Confidence            22111122335678888764 55677776667899999987 654422 22 235678899999999777665 568999


Q ss_pred             EECCCcceeeeeecCC---CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEe-ecCCCcCEEEEEEcCCCCEEEEe
Q 018784          213 WDANHFGLVKGYNMPC---NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGC-NKGHHGPVHCVRFSPGGESYASG  288 (350)
Q Consensus       213 wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~-~~~h~~~v~~l~~sp~~~~lasg  288 (350)
                      +|. +.... .+..+.   ....+.+.+ +++++++....+.|.+||. +++.... +..+...+.++++.+++.++++.
T Consensus       172 ~~~-~g~~~-~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~  247 (300)
T 2qc5_A          172 ITN-TGKLE-EYPLPTNAAAPVGITSGN-DGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE  247 (300)
T ss_dssp             ECT-TCCEE-EEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred             ECC-CCcEE-EeeCCCCCCCcceEEECC-CCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec
Confidence            998 43332 233221   223344444 5788888777888999998 5544332 33455678999999999988887


Q ss_pred             cCCCcEEEecC
Q 018784          289 SEDGTIRIWQT  299 (350)
Q Consensus       289 s~Dg~v~vw~~  299 (350)
                      ..++.|..|+.
T Consensus       248 ~~~~~i~~~~~  258 (300)
T 2qc5_A          248 WGANQIGRITN  258 (300)
T ss_dssp             TTTTEEEEECT
T ss_pred             cCCCeEEEECC
Confidence            77889999986

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.42  E-value=8.6e-12  Score=112.38  Aligned_cols=144  Identities=14%  Similarity=0.050  Sum_probs=106.8

Q ss_pred             CeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC-----------eeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEEC
Q 018784           63 AVWSCCLDANALFSASGSADFTAKLWDALTGD-----------EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL  131 (350)
Q Consensus        63 ~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~-----------~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~  131 (350)
                      ++..+++++...++++|+.|+. ++|++....           ......++. |+.++|  ++.+|+++ .++.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~~l-~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKA-VVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEE-EEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCCEE-EEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            6788999999999999999855 559854221           223456777 999999  88999988 8899999999


Q ss_pred             CCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEE
Q 018784          132 NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVK  211 (350)
Q Consensus       132 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~  211 (350)
                      .+... ......+...+.++.+.++.   ++.+..||+|.+||+.+++...   ....+++++|+|+| ++++..++.++
T Consensus       114 ~sl~~-~~~~~~~~~~v~~i~~~~p~---~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG-~~vg~~dg~i~  185 (388)
T 1xip_A          114 EELSE-FRTVTSFEKPVFQLKNVNNT---LVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ-LAVLLKDRSFQ  185 (388)
T ss_dssp             SSTTC-EEEEEECSSCEEEEEECSSE---EEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE-EEEEETTSCEE
T ss_pred             hhhhc-cCccceeecceeeEEecCCC---EEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc-eEEEEcCCcEE
Confidence            76542 22334455668888777653   6777899999999999887643   23578999999998 45566677777


Q ss_pred             EEECCCcc
Q 018784          212 FWDANHFG  219 (350)
Q Consensus       212 vwd~~~~~  219 (350)
                      +|+.....
T Consensus       186 ~~~~~~~~  193 (388)
T 1xip_A          186 SFAWRNGE  193 (388)
T ss_dssp             EEEEETTE
T ss_pred             EEcCCCcc
Confidence            77665443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.42  E-value=1.1e-09  Score=98.95  Aligned_cols=236  Identities=11%  Similarity=-0.024  Sum_probs=157.8

Q ss_pred             EEEecccCCCccEEEEEe----------CCCCeeEeeCCCCceeeeccCc-------cCCeEEEEECCCCcEEEEeeC--
Q 018784           21 DLFYSPITPDGFFLVSAS----------KDSSPMLRNGETGDWIGTFEGH-------KGAVWSCCLDANALFSASGSA--   81 (350)
Q Consensus        21 ~~~~~~~s~dg~~lasgs----------~d~~v~iw~~~~~~~~~~l~gH-------~~~V~~v~~~~~~~~l~s~s~--   81 (350)
                      .+.|+|   ||++|..+.          .++++.++|..+.+.+.++.--       ...-..++++|++++|+.+..  
T Consensus        70 ~i~~sp---Dg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~  146 (373)
T 2mad_H           70 NPVAAH---SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA  146 (373)
T ss_pred             CeEECC---CCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCC
Confidence            777776   999888875          3678999999988887765321       112347899999999888764  


Q ss_pred             CCeEEEeeCCCCCeeee-eeccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCCCCeee----cCCCCc-EEEEEEe
Q 018784           82 DFTAKLWDALTGDEKHS-FEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREV----GNSSGS-IRTVAWL  154 (350)
Q Consensus        82 Dg~v~vWd~~~~~~~~~-~~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~~~~----~~~~~~-v~~~~~~  154 (350)
                      +.+|.++| .+++.... +.....   +.+.|++ ..+++.+.|+.+.++|. .+.......    ...... .....+.
T Consensus       147 ~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~  221 (373)
T 2mad_H          147 GPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQA  221 (373)
T ss_pred             CCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeE
Confidence            58899999 99887766 654433   4455554 45566778999999998 543321110    011111 1223344


Q ss_pred             CCCCcEEEEEeCCCeEEEEECCCCc--eeEeecC-----------CCCeEEEEEecCCcEEEEE-c----------CCcE
Q 018784          155 HSDQTILSSCTDSGGVRLWDARSGK--IVQTLET-----------KSPVTSAEVSRDGRYITTA-D----------GSSV  210 (350)
Q Consensus       155 ~~~~~~~~s~~~dg~i~iwd~~~~~--~~~~~~~-----------~~~v~~~~~~~~~~~l~~~-~----------~~~i  210 (350)
                      +.++.+++.. ..+.+.+.|+.++.  .+..+..           ......+.++|+++.+... .          ++.|
T Consensus       222 ~~~~~~~~~~-~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V  300 (373)
T 2mad_H          222 NKSGRIVWPV-YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEV  300 (373)
T ss_pred             ecCCEEEEEc-CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeE
Confidence            5555555554 56789999987553  2222211           1224447788988765443 2          2479


Q ss_pred             EEEECCCcceeeeeecCCCCceeEecCCCCc-EEEEec-CCCeEEEEEcccCeeEEee
Q 018784          211 KFWDANHFGLVKGYNMPCNTESASLEPKLGN-IFIAGG-EDMWVHVFDFHTGEQIGCN  266 (350)
Q Consensus       211 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~-~d~~i~v~d~~~~~~~~~~  266 (350)
                      .++|+.+.+.++.+........+.+.++ ++ +++++. .++.|.+||+.+++.+..+
T Consensus       301 ~VID~~t~~vv~~i~~g~~p~~i~~s~D-g~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          301 TSVTGLVGQTSSQISLGHDVDAISVAQD-GGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EEEECCCCEEEEEEECCCCcCeEEECCC-CCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            9999999999998887777778888875 55 666665 5899999999999988773

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.40  E-value=1.5e-11  Score=110.43  Aligned_cols=260  Identities=10%  Similarity=-0.004  Sum_probs=170.2

Q ss_pred             ccEEEEEeCCC----CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEee----------CCCeEEEeeCCCCCee
Q 018784           31 GFFLVSASKDS----SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS----------ADFTAKLWDALTGDEK   96 (350)
Q Consensus        31 g~~lasgs~d~----~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s----------~Dg~v~vWd~~~~~~~   96 (350)
                      .+..++...++    ++.+.|..+++.+.++..-..+  .+.++|++++++.+.          .+++|.+||+.+++..
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv  109 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI  109 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE
T ss_pred             CeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE
Confidence            34556555566    6779999999999988654455  699999998777765          4789999999999988


Q ss_pred             eeeecc--------ccEeEEEEcCCCCeEEEeeC--CCeEEE--EECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEE
Q 018784           97 HSFEHK--------HIVRACAFSEDTHLLLTGGF--EKILRI--FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (350)
Q Consensus        97 ~~~~h~--------~~V~~~~~~~~~~~l~sg~~--d~~v~v--wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~  164 (350)
                      ..+.-.        .....++|+|||++++++..  +..+.+  +|+.+    ...+.. .+.   +...+.+...+++.
T Consensus       110 ~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v-~~~---~~~~p~g~~~~~~~  181 (368)
T 1mda_H          110 ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKS-ASC---FHIHPGAAATHYLG  181 (368)
T ss_dssp             EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEEC-SSC---CCCEEEETTEEECC
T ss_pred             EEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEEC-CCc---eEEccCCCeEEEEE
Confidence            877532        34678999999999998864  467888  98864    122211 111   11233445556666


Q ss_pred             eCCCeEEEEECCC-----CceeEe----ec-CCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcc--eeeeeecC-----
Q 018784          165 TDSGGVRLWDARS-----GKIVQT----LE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFG--LVKGYNMP-----  227 (350)
Q Consensus       165 ~~dg~i~iwd~~~-----~~~~~~----~~-~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~--~~~~~~~~-----  227 (350)
                      +.|+++.+.|+.+     ++....    +. ...+.   ....++.++.++. +.+.+.|.....  .+..+.+.     
T Consensus       182 ~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~  257 (368)
T 1mda_H          182 SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRK  257 (368)
T ss_dssp             CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHH
T ss_pred             cCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccc
Confidence            7788888889886     443311    11 12333   3333445566666 889999986432  22222211     


Q ss_pred             ------CCCceeEecCCCCcEEEEec-C-------CCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCC-EEEEec-CC
Q 018784          228 ------CNTESASLEPKLGNIFIAGG-E-------DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGE-SYASGS-ED  291 (350)
Q Consensus       228 ------~~~~~~~~~~~~~~~l~sg~-~-------d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~-~lasgs-~D  291 (350)
                            .....+.+.++..+++++.. .       ++.+.++|+.+++.+..+.... ..+.|+|+||++ ++++.. .+
T Consensus       258 ~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~  336 (368)
T 1mda_H          258 ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGT  336 (368)
T ss_dssp             HTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTT
T ss_pred             ccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCC
Confidence                  11112446665445555433 2       2356699999999888775433 588999999997 566666 59


Q ss_pred             CcEEEecCCCCCcc
Q 018784          292 GTIRIWQTNPPNHE  305 (350)
Q Consensus       292 g~v~vw~~~~~~~~  305 (350)
                      +.|.++|+.+.+..
T Consensus       337 ~~VsVID~~t~kvv  350 (368)
T 1mda_H          337 EVLDIYDAASDQDQ  350 (368)
T ss_dssp             TEEEEEESSSCEEE
T ss_pred             CeEEEEECCCCcEE
Confidence            99999998765544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.40  E-value=9.4e-11  Score=100.51  Aligned_cols=199  Identities=8%  Similarity=-0.101  Sum_probs=138.8

Q ss_pred             cCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC
Q 018784           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD   94 (350)
Q Consensus        15 H~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~   94 (350)
                      +...+.++++++   +|+++++.. ++.|.+|+................+..+++++++.++++...++.|.+|+..+..
T Consensus        65 ~~~~p~~i~~~~---~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~  140 (270)
T 1rwi_B           65 GLYQPQGLAVDG---AGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT  140 (270)
T ss_dssp             SCCSCCCEEECT---TCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS
T ss_pred             CcCCcceeEECC---CCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce
Confidence            334677888875   888777666 8889999987654432222333668899999999988888888999999865544


Q ss_pred             eeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEE
Q 018784           95 EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW  173 (350)
Q Consensus        95 ~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iw  173 (350)
                      ..... .....+.+++++++++++++...++.|.+||....... .........+..+++.+. +.++++...++.|.+|
T Consensus       141 ~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~  218 (270)
T 1rwi_B          141 QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPFTDITAPWGIAVDEA-GTVYVTEHNTNQVVKL  218 (270)
T ss_dssp             CEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCCSSCCSEEEEEECTT-CCEEEEETTTSCEEEE
T ss_pred             eEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceE-eecccCCCCceEEEECCC-CCEEEEECCCCcEEEE
Confidence            33221 22345788999999997777777889999998653321 111122256788887654 4777777778899999


Q ss_pred             ECCCCceeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcc
Q 018784          174 DARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFG  219 (350)
Q Consensus       174 d~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~  219 (350)
                      |............ ...+..++++++|+++++. .++.|+++++...+
T Consensus       219 ~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          219 LAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             CTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             cCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            9876544332222 2467899999999877665 46789999876543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.39  E-value=4.8e-11  Score=103.31  Aligned_cols=192  Identities=10%  Similarity=0.070  Sum_probs=120.1

Q ss_pred             CCcEEEEeeCCCeEEEeeCCCCCeeeeeecc--ccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEE
Q 018784           72 NALFSASGSADFTAKLWDALTGDEKHSFEHK--HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIR  149 (350)
Q Consensus        72 ~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~--~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~  149 (350)
                      .++++++++.|+.|.+||..+++.+..+...  ..+.++++.|+|++++  +.++.|..||. +++............+.
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence            4678899999999999999999988887643  3688999999999888  45778999998 45443333332234577


Q ss_pred             EEEEeCCCCcEEEEEeC-CCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCC
Q 018784          150 TVAWLHSDQTILSSCTD-SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPC  228 (350)
Q Consensus       150 ~~~~~~~~~~~~~s~~~-dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~  228 (350)
                      ++.+.++++ ++++.+. ++.|..+|. +|+.+..+.....+.                          .     ..  .
T Consensus        81 ~~~~~~dG~-~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~--------------------------~-----~~--~  125 (276)
T 3no2_A           81 TARILPDGN-ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIE--------------------------R-----PH--A  125 (276)
T ss_dssp             EEEECTTSC-EEEEEESTTEEEEEECT-TSCEEEEEEECCSCS--------------------------S-----GG--G
T ss_pred             ccEECCCCC-EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCC--------------------------c-----cc--c
Confidence            777776544 5555444 566666664 565554432110000                          0     00  0


Q ss_pred             CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCc
Q 018784          229 NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNH  304 (350)
Q Consensus       229 ~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~  304 (350)
                      ....+... .+++++++...++.|..||.. |+.+-.+... ..++++.+.+++.++++++.+++|..+|..+.+.
T Consensus       126 ~~~~v~~~-~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~  198 (276)
T 3no2_A          126 QFRQINKN-KKGNYLVPLFATSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI  198 (276)
T ss_dssp             SCSCCEEC-TTSCEEEEETTTTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred             cccCceEC-CCCCEEEEecCCCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence            00011111 246677777777777777766 6666555433 3445566677777777777777777777654443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.39  E-value=1.6e-10  Score=113.17  Aligned_cols=241  Identities=13%  Similarity=0.064  Sum_probs=149.3

Q ss_pred             cCccCCeEEEEECCCCcEEE-----EeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCC--------
Q 018784           58 EGHKGAVWSCCLDANALFSA-----SGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK--------  124 (350)
Q Consensus        58 ~gH~~~V~~v~~~~~~~~l~-----s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~--------  124 (350)
                      ++|...+..++|+||++++|     +|+.+..|++||+.+++.+...........++|+ |++.|+.++.+.        
T Consensus       125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            34666788899999999877     3444478999999998855432111113577899 999888887764        


Q ss_pred             -----eEEEEECCCCCCCCeeecC----CCCcEEEEEEeCCCCcEEEEEeCC---CeEEEEECCCCc-eeEeecCC-CCe
Q 018784          125 -----ILRIFDLNRPDAPPREVGN----SSGSIRTVAWLHSDQTILSSCTDS---GGVRLWDARSGK-IVQTLETK-SPV  190 (350)
Q Consensus       125 -----~v~vwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~s~~~d---g~i~iwd~~~~~-~~~~~~~~-~~v  190 (350)
                           .|++|++.++......+..    +......+.|++++..++++...+   +.|+++|+.++. ....+... ...
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~  283 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD  283 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence                 3999998765432222222    233467888988777776665432   589999998763 33344332 233


Q ss_pred             EEEEEecCCc-EEEEEc----CCcEEEEECCCcce--eeeeecCCCCceeEecCCCCcEEEE-ecCCC--eEEEEEcccC
Q 018784          191 TSAEVSRDGR-YITTAD----GSSVKFWDANHFGL--VKGYNMPCNTESASLEPKLGNIFIA-GGEDM--WVHVFDFHTG  260 (350)
Q Consensus       191 ~~~~~~~~~~-~l~~~~----~~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s-g~~d~--~i~v~d~~~~  260 (350)
                      ... +++++. +++.++    ...|..+|+.+...  .+.+.-+..... .+.+. ++.|+. ...++  .|++||+..+
T Consensus       284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~s~~-g~~lv~~~~~~g~~~l~~~d~~g~  360 (693)
T 3iuj_A          284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL-TVHSG-SGYLFAEYMVDATARVEQFDYEGK  360 (693)
T ss_dssp             EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE-EEEEE-TTEEEEEEEETTEEEEEEECTTSC
T ss_pred             EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE-EEEEE-CCEEEEEEEECCeeEEEEEECCCC
Confidence            333 556554 444443    25688999877543  122222222222 55554 444444 44454  6889998754


Q ss_pred             eeEEeec-CCCcCEEEEEEcCCCCEEEEecCC----CcEEEecCCCCC
Q 018784          261 EQIGCNK-GHHGPVHCVRFSPGGESYASGSED----GTIRIWQTNPPN  303 (350)
Q Consensus       261 ~~~~~~~-~h~~~v~~l~~sp~~~~lasgs~D----g~v~vw~~~~~~  303 (350)
                      .. ..+. ...+.+..+.++|++..++....+    +.|+.||+...+
T Consensus       361 ~~-~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          361 RV-REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EE-EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             ee-EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            43 3332 344567788888888766544333    789999986554

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.38  E-value=1.3e-10  Score=113.72  Aligned_cols=240  Identities=16%  Similarity=0.088  Sum_probs=150.4

Q ss_pred             eccCCceeEEEecccCCCccEEE-----EEeCCCCeeEeeCCCCceeee-ccCccCCeEEEEECCCCcEEEEeeCCCe--
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLV-----SASKDSSPMLRNGETGDWIGT-FEGHKGAVWSCCLDANALFSASGSADFT--   84 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~la-----sgs~d~~v~iw~~~~~~~~~~-l~gH~~~V~~v~~~~~~~~l~s~s~Dg~--   84 (350)
                      .+|+..+..+.|||   ||++||     .|+.+.+|++||+++++.+.. +.+.  ....++|+ |++.|+-++.|..  
T Consensus       125 ~~~~~~l~~~~~Sp---Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~  198 (693)
T 3iuj_A          125 PDGTTALDQLSFSR---DGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDG  198 (693)
T ss_dssp             TTSCCEEEEEEECT---TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-
T ss_pred             CCCcEEEEEEEECC---CCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCccc
Confidence            35666777887775   999888     344446799999999987643 2221  12456899 9998887777744  


Q ss_pred             -----------EEEeeCCCCCe--eeeee----ccccEeEEEEcCCCCeEEEee----CCCeEEEEECCCCCCCCeeecC
Q 018784           85 -----------AKLWDALTGDE--KHSFE----HKHIVRACAFSEDTHLLLTGG----FEKILRIFDLNRPDAPPREVGN  143 (350)
Q Consensus        85 -----------v~vWd~~~~~~--~~~~~----h~~~V~~~~~~~~~~~l~sg~----~d~~v~vwd~~~~~~~~~~~~~  143 (350)
                                 |++|++.+...  ...+.    |...+..+.++|++++|+...    .+..|.++|+.++......+..
T Consensus       199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~  278 (693)
T 3iuj_A          199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG  278 (693)
T ss_dssp             ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC
T ss_pred             ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC
Confidence                       99999877653  22332    233577899999999875432    2358999999876544444444


Q ss_pred             CCCcEEEEEEeCCCCcEEEEEeCC---CeEEEEECCCCce--eEee-cCCCCeEEEEEecCCcEEEEE--cCC--cEEEE
Q 018784          144 SSGSIRTVAWLHSDQTILSSCTDS---GGVRLWDARSGKI--VQTL-ETKSPVTSAEVSRDGRYITTA--DGS--SVKFW  213 (350)
Q Consensus       144 ~~~~v~~~~~~~~~~~~~~s~~~d---g~i~iwd~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~--~~~--~i~vw  213 (350)
                      +....... +.+.++.+++....+   +.|..+|+.++..  ...+ .+...+.  .|+++++.|+..  .++  .|++|
T Consensus       279 ~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~  355 (693)
T 3iuj_A          279 DLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQF  355 (693)
T ss_dssp             SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEE
T ss_pred             CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEE
Confidence            44444444 455667776666554   5799999987654  2333 3333333  788888776543  343  68999


Q ss_pred             ECCCcceeeeeecCCCCce--eEecCCCCcEEEEecC---CCeEEEEEcccCee
Q 018784          214 DANHFGLVKGYNMPCNTES--ASLEPKLGNIFIAGGE---DMWVHVFDFHTGEQ  262 (350)
Q Consensus       214 d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~sg~~---d~~i~v~d~~~~~~  262 (350)
                      |+... ..+.+..+.....  ....+....++++.+.   -+.|+.||+.+++.
T Consensus       356 d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          356 DYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             CTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             ECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            98743 3344444332222  2233333344444332   37899999887754

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.37  E-value=8.6e-10  Score=96.34  Aligned_cols=221  Identities=10%  Similarity=0.021  Sum_probs=142.3

Q ss_pred             eEEEEECCC-CcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeec
Q 018784           64 VWSCCLDAN-ALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG  142 (350)
Q Consensus        64 V~~v~~~~~-~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~  142 (350)
                      -.+..|+++ +.++++...++.|..||..++.. ..+.....+.+++++++++++++ . ++.|.+||..++........
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~   91 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATV   91 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEEC
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEec
Confidence            346678774 66777888889999999987654 34556678999999999996554 3 56899999875432111111


Q ss_pred             ---CCCCcEEEEEEeCCCCcEEEEEeC---------CCeEEEEECC-CCceeEeecCCCCeEEEEEecCCcEEEEE--cC
Q 018784          143 ---NSSGSIRTVAWLHSDQTILSSCTD---------SGGVRLWDAR-SGKIVQTLETKSPVTSAEVSRDGRYITTA--DG  207 (350)
Q Consensus       143 ---~~~~~v~~~~~~~~~~~~~~s~~~---------dg~i~iwd~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~  207 (350)
                         .....+..+++.++ ++++++...         ...-.+|.+. .++...........+.++|+|+++.+..+  ..
T Consensus        92 ~~~~~~~~~~di~~d~d-G~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~  170 (297)
T 3g4e_A           92 DNDKKNNRFNDGKVDPA-GRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLS  170 (297)
T ss_dssp             CTTCSSEEEEEEEECTT-SCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGG
T ss_pred             CCCCCCCCCCCEEECCC-CCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCC
Confidence               12244677887764 445554322         1223444443 24433333333456789999999866443  35


Q ss_pred             CcEEEEEC--CCccee--eee-ecC---CCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEc
Q 018784          208 SSVKFWDA--NHFGLV--KGY-NMP---CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFS  279 (350)
Q Consensus       208 ~~i~vwd~--~~~~~~--~~~-~~~---~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s  279 (350)
                      +.|..||.  .++...  +.+ ...   ..+..+.+.+ +++++++...++.|.+||..+|+.+..+..+...+++++|.
T Consensus       171 ~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~  249 (297)
T 3g4e_A          171 YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFG  249 (297)
T ss_dssp             TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEE
T ss_pred             CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEe
Confidence            78999986  333321  111 111   1233444544 47888888888899999999999888888777789999998


Q ss_pred             -CCCCEE-EEec
Q 018784          280 -PGGESY-ASGS  289 (350)
Q Consensus       280 -p~~~~l-asgs  289 (350)
                       |+++.| ++..
T Consensus       250 g~d~~~L~vt~~  261 (297)
T 3g4e_A          250 GKNYSEMYVTCA  261 (297)
T ss_dssp             SGGGCEEEEEEB
T ss_pred             CCCCCEEEEEcC
Confidence             887654 4443

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.37  E-value=1.7e-11  Score=110.37  Aligned_cols=170  Identities=12%  Similarity=0.029  Sum_probs=125.6

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc---------eee-eccCccCCeEEEEECCCCcEEEEeeCCCeEEE
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---------WIG-TFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~---------~~~-~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~v   87 (350)
                      +++.+++++   ...++++|+.| .+++|+.++.+         ... ....+.+ |+.++|  ++.+|+.+ .++.|++
T Consensus        39 ~~nlLais~---~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISN---SKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEET---TTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEE
T ss_pred             cccEEEEcC---CCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEE
Confidence            678887776   77889999987 45668854332         111 1223666 999999  88888888 8999999


Q ss_pred             eeCCCCCeeee-eeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeC
Q 018784           88 WDALTGDEKHS-FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD  166 (350)
Q Consensus        88 Wd~~~~~~~~~-~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~  166 (350)
                      ||+.+...... ..|...+.++.+.+.  .++++..||.+.+||+......  .   +...|.+++|++.+   ++.|..
T Consensus       111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~--~---~~~~Vs~v~WSpkG---~~vg~~  180 (388)
T 1xip_A          111 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK--Q---LAQNVTSFDVTNSQ---LAVLLK  180 (388)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE--E---EEESEEEEEECSSE---EEEEET
T ss_pred             EEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc--c---ccCCceEEEEcCCc---eEEEEc
Confidence            99876654333 346667888776654  3888999999999999854431  1   34579999999766   455778


Q ss_pred             CCeEEEEECCCCce--eEee------c----CCCCeEEEEEecCCcEEEEE
Q 018784          167 SGGVRLWDARSGKI--VQTL------E----TKSPVTSAEVSRDGRYITTA  205 (350)
Q Consensus       167 dg~i~iwd~~~~~~--~~~~------~----~~~~v~~~~~~~~~~~l~~~  205 (350)
                      ||++++|+...++.  ..++      .    +...+.++.|.++++++++.
T Consensus       181 dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          181 DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            89999999887775  5555      2    35679999999999998763

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.36  E-value=1.8e-10  Score=102.86  Aligned_cols=263  Identities=13%  Similarity=0.074  Sum_probs=161.1

Q ss_pred             CceeEEEecccCCCccEEEEEe--CCCCeeEeeCCCCcee------eeccCccCCeEEEEECCCCcEEEEeeC-----CC
Q 018784           17 RPVVDLFYSPITPDGFFLVSAS--KDSSPMLRNGETGDWI------GTFEGHKGAVWSCCLDANALFSASGSA-----DF   83 (350)
Q Consensus        17 ~~v~~~~~~~~s~dg~~lasgs--~d~~v~iw~~~~~~~~------~~l~gH~~~V~~v~~~~~~~~l~s~s~-----Dg   83 (350)
                      ..+..|+++|   +|+++++..  .++.++||.+.+++..      ....+|...+..++++++++++++-..     ++
T Consensus        17 ~~p~~va~~~---~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTP---DGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVP   93 (343)
T ss_dssp             SCEEEEEECT---TSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCC
T ss_pred             CCcceEEECC---CCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCC
Confidence            5778888886   999988864  2343667766555443      112346678999999999987776433     68


Q ss_pred             eEEEeeCCCCCeeeeeec-------cccEeEEEEcCCCCeE-EEee---CCCeEEEEECCCCCCCCeeecCCCCcEE-EE
Q 018784           84 TAKLWDALTGDEKHSFEH-------KHIVRACAFSEDTHLL-LTGG---FEKILRIFDLNRPDAPPREVGNSSGSIR-TV  151 (350)
Q Consensus        84 ~v~vWd~~~~~~~~~~~h-------~~~V~~~~~~~~~~~l-~sg~---~d~~v~vwd~~~~~~~~~~~~~~~~~v~-~~  151 (350)
                      .|.+||+.+++....+..       ...+..+++.+++..+ ++..   .++.|.+||+.++.. ......|..... ..
T Consensus        94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~-~r~~~~~~~~~~~~~  172 (343)
T 2qe8_A           94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA-ARVLQGYPGIAPEDI  172 (343)
T ss_dssp             EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE-EEECTTCTTTSCCSC
T ss_pred             eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE-EEEecCCCccccccc
Confidence            899999988875555432       2346889999865444 5544   678999999875432 121211111000 01


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEc--CCcEEEEECCC---cc-----e-
Q 018784          152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD--GSSVKFWDANH---FG-----L-  220 (350)
Q Consensus       152 ~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~vwd~~~---~~-----~-  220 (350)
                      .+.. ++..+.+...+++++.|.             ..++.++++|+++.|..++  +..+..++...   ..     . 
T Consensus       173 ~~~~-~g~~~~~~~~~g~~~~~~-------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~  238 (343)
T 2qe8_A          173 DLVI-DGVPVQIGQPDGTVIRPH-------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELG  238 (343)
T ss_dssp             CCEE-TTEECBEECTTSCEECCC-------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHH
T ss_pred             ceeE-CCEEEEeccCCCceecee-------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhh
Confidence            1111 333444555667766553             2357899999998665543  33455554321   00     0 


Q ss_pred             --eeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecC-CCcCEEEEEEcCCCCEEEEecCCCcEEEe
Q 018784          221 --VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG-HHGPVHCVRFSPGGESYASGSEDGTIRIW  297 (350)
Q Consensus       221 --~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~-h~~~v~~l~~sp~~~~lasgs~Dg~v~vw  297 (350)
                        +........+..+.+.+ +++++++...++.|.+||..+++....... +...+.+++|.+++.++++.+..+.+-+|
T Consensus       239 ~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          239 SKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             TTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred             cceEecccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence              01111112334455555 489999999999999999856654333222 24568999999999988887766655444


Q ss_pred             c
Q 018784          298 Q  298 (350)
Q Consensus       298 ~  298 (350)
                      .
T Consensus       318 ~  318 (343)
T 2qe8_A          318 N  318 (343)
T ss_dssp             B
T ss_pred             c
Confidence            3

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.34  E-value=3.1e-09  Score=92.76  Aligned_cols=221  Identities=11%  Similarity=0.054  Sum_probs=145.9

Q ss_pred             eEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee
Q 018784           20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF   99 (350)
Q Consensus        20 ~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~   99 (350)
                      -+..|+|  .++.++++...++.|..|+..+++.. .+. +...+.++++++++.++++.  +..|.+||..+++.....
T Consensus        16 Egp~w~~--~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~   89 (297)
T 3g4e_A           16 ESPVWEE--VSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLA   89 (297)
T ss_dssp             EEEEEET--TTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred             cCCeEEC--CCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEE
Confidence            3555665  24678888888999999999887653 232 34678999999999977654  678999998877644332


Q ss_pred             ec-----cccEeEEEEcCCCCeEEEeeCC---------CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe
Q 018784          100 EH-----KHIVRACAFSEDTHLLLTGGFE---------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (350)
Q Consensus       100 ~h-----~~~V~~~~~~~~~~~l~sg~~d---------~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~  165 (350)
                      ..     ...++.+++.|+|++.++...+         ..-.+|.+..... .............++|++++..++++.+
T Consensus        90 ~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~~spdg~~lyv~~~  168 (297)
T 3g4e_A           90 TVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLDWSLDHKIFYYIDS  168 (297)
T ss_dssp             ECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEEECTTSCEEEEEEG
T ss_pred             ecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeeccccccceEEcCCCCEEEEecC
Confidence            21     2357899999999977654321         3345665543221 1222222344678889877777778877


Q ss_pred             CCCeEEEEEC--CCCce-----eEeec-CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCC-CCceeEe
Q 018784          166 DSGGVRLWDA--RSGKI-----VQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPC-NTESASL  235 (350)
Q Consensus       166 ~dg~i~iwd~--~~~~~-----~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~-~~~~~~~  235 (350)
                      .++.|..||+  .++..     +..+. .......++++++|++.++. .++.|..||..+++.+..+..+. ....+.|
T Consensus       169 ~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f  248 (297)
T 3g4e_A          169 LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCF  248 (297)
T ss_dssp             GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEE
T ss_pred             CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEE
Confidence            7889999987  45543     12222 12456788999999877765 45679999998888887777764 3445556


Q ss_pred             c-CCCCcEEEEec
Q 018784          236 E-PKLGNIFIAGG  247 (350)
Q Consensus       236 ~-~~~~~~l~sg~  247 (350)
                      . +....++++..
T Consensus       249 ~g~d~~~L~vt~~  261 (297)
T 3g4e_A          249 GGKNYSEMYVTCA  261 (297)
T ss_dssp             ESGGGCEEEEEEB
T ss_pred             eCCCCCEEEEEcC
Confidence            5 33234445444

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.33  E-value=1.3e-09  Score=98.47  Aligned_cols=263  Identities=10%  Similarity=-0.008  Sum_probs=163.7

Q ss_pred             ccEEEEEeCCCCeeEeeCCCCceeeeccCc---------cCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeec
Q 018784           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGH---------KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH  101 (350)
Q Consensus        31 g~~lasgs~d~~v~iw~~~~~~~~~~l~gH---------~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h  101 (350)
                      +..|..++.++.+..+|.++|+.+..+...         ...+.+... .++..++.++.|+.|..+|..+++.+.....
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~  131 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVT-VSGGHVYIGSEKAQVYALNTSDGTVAWQTKV  131 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEE-EETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCce-EeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence            446677888899999999999887665432         122322222 2344556677899999999999998877654


Q ss_pred             cccEeE-EEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCc----EEEEEEeCCCCcEEEEEeCCCeEEEEECC
Q 018784          102 KHIVRA-CAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS----IRTVAWLHSDQTILSSCTDSGGVRLWDAR  176 (350)
Q Consensus       102 ~~~V~~-~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~s~~~dg~i~iwd~~  176 (350)
                      ...+.+ ...  .+..++.++.++.+..+|..+++............    .......  ++ .++.+..++.|..+|.+
T Consensus       132 ~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~-~v~~g~~~g~l~~~d~~  206 (376)
T 3q7m_A          132 AGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FG-AAVVGGDNGRVSAVLME  206 (376)
T ss_dssp             SSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TT-EEEECCTTTEEEEEETT
T ss_pred             CCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CC-EEEEEcCCCEEEEEECC
Confidence            332221 111  24467788889999999987765433222111000    0111111  33 35556778999999999


Q ss_pred             CCceeEeecCCCC-----------eEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEE
Q 018784          177 SGKIVQTLETKSP-----------VTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA  245 (350)
Q Consensus       177 ~~~~~~~~~~~~~-----------v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s  245 (350)
                      +|+.+.......+           +.......++.+++++.++.+..+|..+++.+........ .....   .+..+..
T Consensus       207 tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~---~~~~l~~  282 (376)
T 3q7m_A          207 QGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSV-NDFIV---DGNRIYL  282 (376)
T ss_dssp             TCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCCE-EEEEE---ETTEEEE
T ss_pred             CCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCCC-CCceE---ECCEEEE
Confidence            9998877654321           1111112256666666788999999998887765543221 11111   2456677


Q ss_pred             ecCCCeEEEEEcccCeeEEeecC-CCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784          246 GGEDMWVHVFDFHTGEQIGCNKG-HHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       246 g~~d~~i~v~d~~~~~~~~~~~~-h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~  305 (350)
                      ++.++.|..+|..+|+.+-.... ....+.....  .+..|+.++.+|.|.++|..+.+..
T Consensus       283 ~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~  341 (376)
T 3q7m_A          283 VDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFV  341 (376)
T ss_dssp             EETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE
T ss_pred             EcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEE
Confidence            77889999999999987655442 1222222222  2457888899999999998766544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.33  E-value=2.9e-10  Score=110.67  Aligned_cols=254  Identities=11%  Similarity=0.053  Sum_probs=164.3

Q ss_pred             ccEEEEEeCCCCeeEeeCCCCceeeeccCc-c----CCeEEEEECCCCcEEEEee-----CCCeEEEeeCCCCCeeeeee
Q 018784           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGH-K----GAVWSCCLDANALFSASGS-----ADFTAKLWDALTGDEKHSFE  100 (350)
Q Consensus        31 g~~lasgs~d~~v~iw~~~~~~~~~~l~gH-~----~~V~~v~~~~~~~~l~s~s-----~Dg~v~vWd~~~~~~~~~~~  100 (350)
                      +..|..++.|+.+..+|..+|+.+..+..+ .    ..+.+.-.-.++.+++..+     .++.|+.+|..+++.+..+.
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~  207 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF  207 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence            456778899999999999999998877654 1    1121100112455544433     37999999999999887664


Q ss_pred             cccc---------------------------------EeEEEEcCCCCeEEEeeCCC-------------------eEEE
Q 018784          101 HKHI---------------------------------VRACAFSEDTHLLLTGGFEK-------------------ILRI  128 (350)
Q Consensus       101 h~~~---------------------------------V~~~~~~~~~~~l~sg~~d~-------------------~v~v  128 (350)
                      ....                                 ...+++.|++.+++.+..++                   .|..
T Consensus       208 ~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~A  287 (677)
T 1kb0_A          208 SVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVA  287 (677)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred             cCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEE
Confidence            2110                                 12567888888888877664                   5888


Q ss_pred             EECCCCCCCCeeec-CCC-------CcEEEEEEeCCCC---cEEEEEeCCCeEEEEECCCCceeEeecCCC---------
Q 018784          129 FDLNRPDAPPREVG-NSS-------GSIRTVAWLHSDQ---TILSSCTDSGGVRLWDARSGKIVQTLETKS---------  188 (350)
Q Consensus       129 wd~~~~~~~~~~~~-~~~-------~~v~~~~~~~~~~---~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~---------  188 (350)
                      +|..+++....... .+.       ....-+.... ++   ..++.++.+|.++++|.++|+.+.......         
T Consensus       288 lD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~-dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~  366 (677)
T 1kb0_A          288 LDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDK  366 (677)
T ss_dssp             ECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECT
T ss_pred             EECCCCCEEEEEecCCCcccccccCCCcEEEeccc-CCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCC
Confidence            89887665433222 121       1111122111 33   577888899999999999999877654211         


Q ss_pred             ---Ce------------------------EEEEEecCCcEEEEE-c----------------------------------
Q 018784          189 ---PV------------------------TSAEVSRDGRYITTA-D----------------------------------  206 (350)
Q Consensus       189 ---~v------------------------~~~~~~~~~~~l~~~-~----------------------------------  206 (350)
                         ++                        ..++++|++.++... .                                  
T Consensus       367 ~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~  446 (677)
T 1kb0_A          367 HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFF  446 (677)
T ss_dssp             TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEE
T ss_pred             CCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccc
Confidence               01                        145778877665442 1                                  


Q ss_pred             ---------CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecC-CCcCEEEE
Q 018784          207 ---------GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG-HHGPVHCV  276 (350)
Q Consensus       207 ---------~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~-h~~~v~~l  276 (350)
                               .+.|..||+.+++.+..+..........+.. .+.+++.++.|+.+++||..+|+.+..+.. +.....-+
T Consensus       447 ~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~  525 (677)
T 1kb0_A          447 NAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPS  525 (677)
T ss_dssp             CSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred             ccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCE
Confidence                     1679999999998877766543333333332 356777889999999999999999887753 33333446


Q ss_pred             EEcCCCCEEE
Q 018784          277 RFSPGGESYA  286 (350)
Q Consensus       277 ~~sp~~~~la  286 (350)
                      .|.++|+.++
T Consensus       526 ~y~~~G~~~v  535 (677)
T 1kb0_A          526 TYMVDGRQYV  535 (677)
T ss_dssp             EEEETTEEEE
T ss_pred             EEEeCCEEEE
Confidence            6777886543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.33  E-value=2.2e-09  Score=95.06  Aligned_cols=219  Identities=12%  Similarity=0.021  Sum_probs=138.2

Q ss_pred             EEEEECCC-CcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeec-
Q 018784           65 WSCCLDAN-ALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-  142 (350)
Q Consensus        65 ~~v~~~~~-~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~-  142 (350)
                      ...+|+++ +.++++...++.|..||..+++. ..+.....+.++++.|+++++++. . ..|.+||..++........ 
T Consensus        52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~~~  128 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNILERELHELHLASGRK-TVHALPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELE  128 (326)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSS
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEECCCCcE-EEEECCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEeeCC
Confidence            45678886 56777777889999999877643 334456679999999999877754 3 4589999865442111111 


Q ss_pred             --CCCCcEEEEEEeCCCCcEEEEEeC------CCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE--cCCcEEE
Q 018784          143 --NSSGSIRTVAWLHSDQTILSSCTD------SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA--DGSSVKF  212 (350)
Q Consensus       143 --~~~~~v~~~~~~~~~~~~~~s~~~------dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~v  212 (350)
                        .....+..+++.+.+ .++++...      .+.|..+|  +++...........+.++|+|+++.+..+  .++.|.+
T Consensus       129 ~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~  205 (326)
T 2ghs_A          129 SDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMR  205 (326)
T ss_dssp             TTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred             CCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEE
Confidence              112357788887654 45554432      24566666  45543322223456789999999765433  3578999


Q ss_pred             EECC--Cc-cee--eee-ecC---CCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEc-CCC
Q 018784          213 WDAN--HF-GLV--KGY-NMP---CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFS-PGG  282 (350)
Q Consensus       213 wd~~--~~-~~~--~~~-~~~---~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s-p~~  282 (350)
                      ||..  ++ ...  +.+ ...   .....+.+.+ +++++++...++.|.+||. +++.+..+..+...+++++|+ |++
T Consensus       206 ~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~  283 (326)
T 2ghs_A          206 VPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDA  283 (326)
T ss_dssp             EEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTS
T ss_pred             EEcccccCCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCC
Confidence            9975  33 211  111 111   1122333333 5677777767789999998 677777776677779999998 887


Q ss_pred             CEE-EEecCC
Q 018784          283 ESY-ASGSED  291 (350)
Q Consensus       283 ~~l-asgs~D  291 (350)
                      ..| ++...+
T Consensus       284 ~~L~vt~~~~  293 (326)
T 2ghs_A          284 SRLLVTSARE  293 (326)
T ss_dssp             CEEEEEEBCT
T ss_pred             CEEEEEecCC
Confidence            665 444444

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.31  E-value=4.2e-09  Score=95.02  Aligned_cols=254  Identities=13%  Similarity=0.055  Sum_probs=159.9

Q ss_pred             ccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEe----
Q 018784           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVR----  106 (350)
Q Consensus        31 g~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~----  106 (350)
                      +..|..++.++.+..+|.++|+.+..+...........+. + ..++.++.++.|..+|..+++.+........+.    
T Consensus       103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~-~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~  180 (376)
T 3q7m_A          103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS-D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRG  180 (376)
T ss_dssp             TTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE-T-TEEEEECTTSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE-C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence            3456778889999999999999876655432211111121 3 355667789999999999999887765433321    


Q ss_pred             --EEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCC-Cc--------E-EEEEEeCCCCcEEEEEeCCCeEEEEE
Q 018784          107 --ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS-GS--------I-RTVAWLHSDQTILSSCTDSGGVRLWD  174 (350)
Q Consensus       107 --~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~-~~--------v-~~~~~~~~~~~~~~s~~~dg~i~iwd  174 (350)
                        ....  .+..++.+..++.+..+|..+++.......... +.        + .....  .++ .+..++.++.+..+|
T Consensus       181 ~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~-~v~~~~~~g~l~~~d  255 (376)
T 3q7m_A          181 ESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNG-VVFALAYNGNLTALD  255 (376)
T ss_dssp             CCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETT-EEEEECTTSCEEEEE
T ss_pred             CCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECC-EEEEEecCcEEEEEE
Confidence              1111  245677888899999999876654332221110 00        0 00011  133 344556789999999


Q ss_pred             CCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeec-CCCCc-eeEecCCCCcEEEEecCCCeE
Q 018784          175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM-PCNTE-SASLEPKLGNIFIAGGEDMWV  252 (350)
Q Consensus       175 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~l~sg~~d~~i  252 (350)
                      .++++.+....... ...+.. .++.++++..++.+..+|..+++....... ..... ....   .+..++.++.++.|
T Consensus       256 ~~tG~~~w~~~~~~-~~~~~~-~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~---~~~~l~v~~~~g~l  330 (376)
T 3q7m_A          256 LRSGQIMWKRELGS-VNDFIV-DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL---YNGNLVVGDSEGYL  330 (376)
T ss_dssp             TTTCCEEEEECCCC-EEEEEE-ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE---ETTEEEEECTTSEE
T ss_pred             CCCCcEEeeccCCC-CCCceE-ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE---ECCEEEEEeCCCeE
Confidence            99999887765433 333333 356666777788999999998887665542 11111 1111   24678888889999


Q ss_pred             EEEEcccCeeEEeecCCCcCEEE-EEEcCCCCEEEEecCCCcEEEec
Q 018784          253 HVFDFHTGEQIGCNKGHHGPVHC-VRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       253 ~v~d~~~~~~~~~~~~h~~~v~~-l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      +++|..+|+.+.........+.+ ...  .+..|+.++.+|.|+.|+
T Consensus       331 ~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          331 HWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred             EEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence            99999999987665543333322 122  244677789999999886

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.30  E-value=1.9e-09  Score=94.50  Aligned_cols=232  Identities=11%  Similarity=0.025  Sum_probs=146.1

Q ss_pred             eeccCccCCeEEEEECCCCc-EEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCC
Q 018784           55 GTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR  133 (350)
Q Consensus        55 ~~l~gH~~~V~~v~~~~~~~-~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~  133 (350)
                      ..+..+........|++++. ++++...++.|..|+. ++.......+...+..+++.++|+++++...++.|.+|+.. 
T Consensus        38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-  115 (305)
T 3dr2_A           38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-  115 (305)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence            34444445567888999987 7788888899999997 45433333456678999999999977766667889999875 


Q ss_pred             CCCCCeeec----CCCCcEEEEEEeCCCCcEEEE----EeC-------------CCeEEEEECCCCceeEeecCCCCeEE
Q 018784          134 PDAPPREVG----NSSGSIRTVAWLHSDQTILSS----CTD-------------SGGVRLWDARSGKIVQTLETKSPVTS  192 (350)
Q Consensus       134 ~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~s----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~v~~  192 (350)
                      +.. .....    .....+..+++.+ ++.++++    |..             .+.|..+|..+++..... .....+.
T Consensus       116 g~~-~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~g  192 (305)
T 3dr2_A          116 GQA-HLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNG  192 (305)
T ss_dssp             SCE-EEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEE
T ss_pred             CCE-EEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcc
Confidence            321 11111    1112345677665 5566665    321             256888888777654433 3345678


Q ss_pred             EEEecCCcEEEEE-cC------CcEEEEECCCccee--eeee-c-CCCCceeEecCCCCcEEEEecCCCeEEEEEcccCe
Q 018784          193 AEVSRDGRYITTA-DG------SSVKFWDANHFGLV--KGYN-M-PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (350)
Q Consensus       193 ~~~~~~~~~l~~~-~~------~~i~vwd~~~~~~~--~~~~-~-~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~  261 (350)
                      ++|+|+++.|..+ ..      +.|.+||+......  +.+. . ......+.+.+ +++++++. .+ .|.+|+. +++
T Consensus       193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~-~G~lwv~~-~~-gv~~~~~-~g~  268 (305)
T 3dr2_A          193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDR-GGWLWSSS-GT-GVCVFDS-DGQ  268 (305)
T ss_dssp             EEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECT-TSCEEECC-SS-EEEEECT-TSC
T ss_pred             eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECC-CCCEEEec-CC-cEEEECC-CCC
Confidence            9999999865443 33      57999997654311  1111 1 11222344443 46655544 44 4999998 566


Q ss_pred             eEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEE
Q 018784          262 QIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRI  296 (350)
Q Consensus       262 ~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~v  296 (350)
                      .+..+..+. .+.+++|+|+++.|..++.++..++
T Consensus       269 ~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          269 LLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             EEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             EEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            666665544 5889999999888777776654443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.29  E-value=2.4e-09  Score=93.89  Aligned_cols=223  Identities=12%  Similarity=0.079  Sum_probs=143.9

Q ss_pred             CCceeEEEecccCCCcc-EEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC
Q 018784           16 SRPVVDLFYSPITPDGF-FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD   94 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~-~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~   94 (350)
                      ........|+|   +|+ ++.++..++.+..|+. +++ ...+..+...+..++++++++++++...++.|.+|+.. +.
T Consensus        44 ~~~~egp~~~~---~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~  117 (305)
T 3dr2_A           44 ATWSEGPAWWE---AQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ  117 (305)
T ss_dssp             CSSEEEEEEEG---GGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred             CcCccCCeEeC---CCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC
Confidence            33445666775   887 7788888899999987 455 34555566778999999999988877677899999975 54


Q ss_pred             eeeeeec-----cccEeEEEEcCCCCeEEE----eeC-------------CCeEEEEECCCCCCCCeeecCCCCcEEEEE
Q 018784           95 EKHSFEH-----KHIVRACAFSEDTHLLLT----GGF-------------EKILRIFDLNRPDAPPREVGNSSGSIRTVA  152 (350)
Q Consensus        95 ~~~~~~h-----~~~V~~~~~~~~~~~l~s----g~~-------------d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~  152 (350)
                      ......+     ...+..+++.|+|.+.+|    |..             .+.|..||..++...  ... .......++
T Consensus       118 ~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~--~~~-~~~~p~gl~  194 (305)
T 3dr2_A          118 AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ--RMA-DLDHPNGLA  194 (305)
T ss_dssp             EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE--EEE-EESSEEEEE
T ss_pred             EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE--EEe-cCCCCcceE
Confidence            3322211     134678999999998886    332             245666666443322  222 334567788


Q ss_pred             EeCCCCcEEEEEeC-----CCeEEEEECCCCcee--Eeec--CCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeee
Q 018784          153 WLHSDQTILSSCTD-----SGGVRLWDARSGKIV--QTLE--TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKG  223 (350)
Q Consensus       153 ~~~~~~~~~~s~~~-----dg~i~iwd~~~~~~~--~~~~--~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~  223 (350)
                      |++++..++++...     .+.|..||+..+...  ..+.  .......+.++++|++.++. .+.|.+|+.. ++.+..
T Consensus       195 ~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~-g~~~~~  272 (305)
T 3dr2_A          195 FSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD-GQLLGH  272 (305)
T ss_dssp             ECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSEEEEECTT-SCEEEE
T ss_pred             EcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCcEEEECCC-CCEEEE
Confidence            88766556555444     268999998754311  1111  12334568899999977665 4459999984 556666


Q ss_pred             eecCCCCceeEecCCCCcEEEEecCCC
Q 018784          224 YNMPCNTESASLEPKLGNIFIAGGEDM  250 (350)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~l~sg~~d~  250 (350)
                      +..+.....+.+.+ +++.|..++.++
T Consensus       273 ~~~~~~~~~~~f~~-d~~~L~it~~~~  298 (305)
T 3dr2_A          273 IPTPGTASNCTFDQ-AQQRLFITGGPC  298 (305)
T ss_dssp             EECSSCCCEEEECT-TSCEEEEEETTE
T ss_pred             EECCCceeEEEEeC-CCCEEEEEcCCe
Confidence            66665555666664 455555555443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.29  E-value=1.5e-09  Score=105.83  Aligned_cols=253  Identities=15%  Similarity=0.126  Sum_probs=162.8

Q ss_pred             ccEEEEEeCCCCeeEeeCCCCceeeeccCc--cCCeEEEEECC---CCcEEEEee-----CCCeEEEeeCCCCCeeeeee
Q 018784           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGH--KGAVWSCCLDA---NALFSASGS-----ADFTAKLWDALTGDEKHSFE  100 (350)
Q Consensus        31 g~~lasgs~d~~v~iw~~~~~~~~~~l~gH--~~~V~~v~~~~---~~~~l~s~s-----~Dg~v~vWd~~~~~~~~~~~  100 (350)
                      +..|+.++.|+.+..+|.++|+.+..+...  ......+..+|   ++.+++..+     .||.|..||..+++.+..+.
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence            456788899999999999999988766532  11111111111   555555433     37999999999999887664


Q ss_pred             cc--------------------------------ccEeEEEEcCCCCeEEEeeCCCe-------------------EEEE
Q 018784          101 HK--------------------------------HIVRACAFSEDTHLLLTGGFEKI-------------------LRIF  129 (350)
Q Consensus       101 h~--------------------------------~~V~~~~~~~~~~~l~sg~~d~~-------------------v~vw  129 (350)
                      ..                                .....+++.|+..+++.+..++.                   |..+
T Consensus       201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al  280 (689)
T 1yiq_A          201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV  280 (689)
T ss_dssp             SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred             ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            11                                00125788888888988887764                   9999


Q ss_pred             ECCCCCCCCeeecC-CC-------CcEEEEEEeCCCC---cEEEEEeCCCeEEEEECCCCceeEeecCCC----------
Q 018784          130 DLNRPDAPPREVGN-SS-------GSIRTVAWLHSDQ---TILSSCTDSGGVRLWDARSGKIVQTLETKS----------  188 (350)
Q Consensus       130 d~~~~~~~~~~~~~-~~-------~~v~~~~~~~~~~---~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~----------  188 (350)
                      |+.+++........ +.       ..+...... .++   ..++.++.+|.++++|.++|+.+.......          
T Consensus       281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~-~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~  359 (689)
T 1yiq_A          281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELP-IDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMK  359 (689)
T ss_dssp             ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE-ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETT
T ss_pred             EccCCceeEeeecCCcccccccCCCCcEEEeec-cCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCcc
Confidence            99887654433221 21       111111111 123   267788899999999999999874332110          


Q ss_pred             ------------------------------CeEEEEEecCCcEEEEE-c-------------------------------
Q 018784          189 ------------------------------PVTSAEVSRDGRYITTA-D-------------------------------  206 (350)
Q Consensus       189 ------------------------------~v~~~~~~~~~~~l~~~-~-------------------------------  206 (350)
                                                    ....++++|+..++... .                               
T Consensus       360 ~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  439 (689)
T 1yiq_A          360 TGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMM  439 (689)
T ss_dssp             TTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCC
T ss_pred             CCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccccc
Confidence                                          01125778776655432 0                               


Q ss_pred             --------------CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCc-
Q 018784          207 --------------GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHG-  271 (350)
Q Consensus       207 --------------~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~-  271 (350)
                                    ++.|..||+.+++.+..+..+.......+.. .+.+++.|+.|+.|+.||.++|+.+-.+....+ 
T Consensus       440 p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~  518 (689)
T 1yiq_A          440 PEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGV  518 (689)
T ss_dssp             CSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             CcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCc
Confidence                          2569999999998887766544332223322 367888899999999999999999877654322 


Q ss_pred             CEEEEEEcCCCCEE
Q 018784          272 PVHCVRFSPGGESY  285 (350)
Q Consensus       272 ~v~~l~~sp~~~~l  285 (350)
                      ...-+.|..+|+.+
T Consensus       519 ~~~p~ty~~~G~qy  532 (689)
T 1yiq_A          519 MAAPVTYSVDGEQY  532 (689)
T ss_dssp             CSCCEEEEETTEEE
T ss_pred             ccCceEEEECCEEE
Confidence            22446677788654

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.27  E-value=3.8e-12  Score=115.03  Aligned_cols=255  Identities=10%  Similarity=-0.004  Sum_probs=138.2

Q ss_pred             CccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeecc--ccEeE
Q 018784           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHK--HIVRA  107 (350)
Q Consensus        30 dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~--~~V~~  107 (350)
                      ++.+|++++.|+.+..||..+|+.+..++.  +.+.+..+..++.++++++.||.|..||..+++.+..+...  ..+.+
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            566889999999999999999999988876  55555555567778888899999999999988876655322  11111


Q ss_pred             EEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC
Q 018784          108 CAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK  187 (350)
Q Consensus       108 ~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~  187 (350)
                      .-....+..+++++.|+.+..||..+++.........     ...+.+ .+..++.++.|+.|+.||.++|+.+..+...
T Consensus        86 sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~  159 (369)
T 2hz6_A           86 SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSP-STSLLYLGRTEYTITMYDTKTRELRWNATYF  159 (369)
T ss_dssp             CSCC-----CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred             CceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccc-cCCEEEEEecCCEEEEEECCCCCEEEeEecc
Confidence            0011134567888999999999998776544332211     122233 4445666777899999999999876665421


Q ss_pred             CCeEEEEEecC----CcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEE----EEecCCCeEEEEEccc
Q 018784          188 SPVTSAEVSRD----GRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIF----IAGGEDMWVHVFDFHT  259 (350)
Q Consensus       188 ~~v~~~~~~~~----~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~sg~~d~~i~v~d~~~  259 (350)
                      . .....+.++    +.+++++.++.+..||.++++.+..+..............++.++    ..+  ++.++.+|..+
T Consensus       160 ~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~--~~~l~~ld~~t  236 (369)
T 2hz6_A          160 D-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLRKVMHINVA--VETLRYLTFMS  236 (369)
T ss_dssp             E-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCEEECCEEEE--HHHHHHHHHHH
T ss_pred             c-ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceEeccceeec--ccceeeeehhc
Confidence            1 111223332    567777788999999999988877665433222111111122211    111  23355666666


Q ss_pred             Ce----eEEeecCCCcCEEEEEEcC--CCCEEEEecCCCcEEEecCC
Q 018784          260 GE----QIGCNKGHHGPVHCVRFSP--GGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       260 ~~----~~~~~~~h~~~v~~l~~sp--~~~~lasgs~Dg~v~vw~~~  300 (350)
                      |+    .+-.... ...+.    +|  .+..++.++.||.|+..+..
T Consensus       237 G~~~~~~~W~~~~-~~~~~----sp~~~~g~lyv~~~~G~l~al~~~  278 (369)
T 2hz6_A          237 GEVGRITKWKYPF-PKETE----AKSKLTPTLYVGKYSTSLYASPSM  278 (369)
T ss_dssp             HHHHHHHTSCCCC-CCHHH----HHHHSEEEECBEECSSCEECCEEE
T ss_pred             CCcccceeeeecc-Ccccc----ccccccceEEEecccCCEEecCcc
Confidence            65    3211110 01110    22  23456777888888888764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.25  E-value=2.3e-09  Score=93.86  Aligned_cols=196  Identities=10%  Similarity=0.095  Sum_probs=132.6

Q ss_pred             cCCceeEEEecccCCC-ccEEEEEeCCCCeeEeeCCCCceeee-ccC----ccCCeEEEEECCCCcEEEEeeCC------
Q 018784           15 HSRPVVDLFYSPITPD-GFFLVSASKDSSPMLRNGETGDWIGT-FEG----HKGAVWSCCLDANALFSASGSAD------   82 (350)
Q Consensus        15 H~~~v~~~~~~~~s~d-g~~lasgs~d~~v~iw~~~~~~~~~~-l~g----H~~~V~~v~~~~~~~~l~s~s~D------   82 (350)
                      +...+.++++++   + |+++++... ..+.+|+.+ ++.... ...    +...+..+++++++.+.++...+      
T Consensus        69 ~~~~~~~i~~~~---~~g~l~v~~~~-~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~  143 (314)
T 1pjx_A           69 YGGIPAGCQCDR---DANQLFVADMR-LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD  143 (314)
T ss_dssp             EECCEEEEEECS---SSSEEEEEETT-TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSC
T ss_pred             CCCCCceEEEec---CCCcEEEEECC-CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccc
Confidence            556788888875   7 776665543 478889988 776543 221    22457899999999988887665      


Q ss_pred             ---------CeEEEeeCCCCCeeeeeeccccEeEEEEc----CCCCeEEEe-eCCCeEEEEECC-CCCCC----CeeecC
Q 018784           83 ---------FTAKLWDALTGDEKHSFEHKHIVRACAFS----EDTHLLLTG-GFEKILRIFDLN-RPDAP----PREVGN  143 (350)
Q Consensus        83 ---------g~v~vWd~~~~~~~~~~~h~~~V~~~~~~----~~~~~l~sg-~~d~~v~vwd~~-~~~~~----~~~~~~  143 (350)
                               +.|..|+.. ++......+......++++    |+++.|+.+ ..++.|.+||+. .+...    ......
T Consensus       144 ~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~  222 (314)
T 1pjx_A          144 YTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG  222 (314)
T ss_dssp             CCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC
T ss_pred             ccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCC
Confidence                     567777765 5444444444557889999    999765544 568899999975 22110    011112


Q ss_pred             CC-CcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEE-EEEc-CCcEEEEECCC
Q 018784          144 SS-GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYI-TTAD-GSSVKFWDANH  217 (350)
Q Consensus       144 ~~-~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l-~~~~-~~~i~vwd~~~  217 (350)
                      +. ..+..+++.+ ++.++++...++.|.+||.++++.+..+..+ ..+..++++++++.| ++.. ++.|..|++..
T Consensus       223 ~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          223 THEGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCCCCCceEECC-CCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            22 4567787765 5567777767789999999877766665544 668899999999844 4443 46898998764

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.23  E-value=1.5e-09  Score=99.03  Aligned_cols=239  Identities=12%  Similarity=0.040  Sum_probs=150.8

Q ss_pred             EEEecccCCCccEEEEEe----------CCCCeeEeeCCCCceeeeccCc-------cCCeEEEEECCCCcEEEEeeC--
Q 018784           21 DLFYSPITPDGFFLVSAS----------KDSSPMLRNGETGDWIGTFEGH-------KGAVWSCCLDANALFSASGSA--   81 (350)
Q Consensus        21 ~~~~~~~s~dg~~lasgs----------~d~~v~iw~~~~~~~~~~l~gH-------~~~V~~v~~~~~~~~l~s~s~--   81 (350)
                      .+.++|   ||++|..+.          .++.|.++|..+++.+.++.--       ...-..+.+++|+++++.+..  
T Consensus       122 gia~Sp---Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~  198 (426)
T 3c75_H          122 HPVAAE---DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSP  198 (426)
T ss_dssp             EEEECT---TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSS
T ss_pred             ceEECC---CCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCC
Confidence            677776   998777765          4678999999999988776411       112345689999998887764  


Q ss_pred             CCeEEEeeCCCCCeeeeeeccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCCCCe---eecCCCCc-EEEEEEeCC
Q 018784           82 DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPR---EVGNSSGS-IRTVAWLHS  156 (350)
Q Consensus        82 Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~~---~~~~~~~~-v~~~~~~~~  156 (350)
                      +++|.+.|+.+++.+..+.-...   ....|++ ..+++.+.|+.+.+.++........   ........ ...+.+.+.
T Consensus       199 ~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~d  275 (426)
T 3c75_H          199 APAVGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLR  275 (426)
T ss_dssp             SCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTT
T ss_pred             CCeEEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCC
Confidence            58999999999887776654332   2223322 3344455566666556532211100   00000001 112344555


Q ss_pred             CCcEEEEEeCCCeEEEEECCCCcee--EeecC-----------CCCeEEEEEecCCcEEEEEc-----------CCcEEE
Q 018784          157 DQTILSSCTDSGGVRLWDARSGKIV--QTLET-----------KSPVTSAEVSRDGRYITTAD-----------GSSVKF  212 (350)
Q Consensus       157 ~~~~~~s~~~dg~i~iwd~~~~~~~--~~~~~-----------~~~v~~~~~~~~~~~l~~~~-----------~~~i~v  212 (350)
                      ++.++++. ..++|.+.|+......  ..+..           ......+.++++++.+....           .+.|.+
T Consensus       276 g~~~~~~s-~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsV  354 (426)
T 3c75_H          276 SGRLVWPT-YTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVV  354 (426)
T ss_dssp             TCEEEEEB-TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred             CCEEEEEe-CCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEE
Confidence            55555554 5689999998765421  11110           11222368899977554432           246999


Q ss_pred             EECCCcceeeeeecCCCCceeEecCCCCcEEEEec-CCCeEEEEEcccCeeEEee
Q 018784          213 WDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG-EDMWVHVFDFHTGEQIGCN  266 (350)
Q Consensus       213 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~-~d~~i~v~d~~~~~~~~~~  266 (350)
                      +|+.+.+.+..+........+.+.++...++++.. .++.|.++|+.+++.+.++
T Consensus       355 ID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          355 LNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            99999999998887766777788875431555444 6999999999999998876

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.21  E-value=4e-08  Score=86.93  Aligned_cols=205  Identities=10%  Similarity=-0.024  Sum_probs=133.3

Q ss_pred             eEEEecccCCC-ccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeee
Q 018784           20 VDLFYSPITPD-GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS   98 (350)
Q Consensus        20 ~~~~~~~~s~d-g~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~   98 (350)
                      -+..|+|   + +.++++...++.|..|+..+++.. .+. +...+.++++++++.++++.  +..|.+||..+++....
T Consensus        52 egp~~~~---~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g~~~~~  124 (326)
T 2ghs_A           52 EGPTFDP---ASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS--DDGLFLRDTATGVLTLH  124 (326)
T ss_dssp             EEEEEET---TTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE--TTEEEEEETTTCCEEEE
T ss_pred             cCCeEeC---CCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE--CCCEEEEECCCCcEEEE
Confidence            3556665   5 567788888899999998877653 232 34678999999999988765  34599999887765433


Q ss_pred             eec-----cccEeEEEEcCCCCeEEEeeC------CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC
Q 018784           99 FEH-----KHIVRACAFSEDTHLLLTGGF------EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (350)
Q Consensus        99 ~~h-----~~~V~~~~~~~~~~~l~sg~~------d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d  167 (350)
                      ...     ...++.++++|+|++.++...      .+.|..++  ++.  .............++|++++..++++...+
T Consensus       125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~--~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~  200 (326)
T 2ghs_A          125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK--VTKLFADISIPNSICFSPDGTTGYFVDTKV  200 (326)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE--EEEEEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred             eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc--EEEeeCCCcccCCeEEcCCCCEEEEEECCC
Confidence            221     235889999999987765432      23444445  222  111112223466788887666677777777


Q ss_pred             CeEEEEECC--CC-c-----eeEeec-CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCC-CceeEec
Q 018784          168 GGVRLWDAR--SG-K-----IVQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-TESASLE  236 (350)
Q Consensus       168 g~i~iwd~~--~~-~-----~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~  236 (350)
                      +.|.+||+.  ++ +     .+..+. .......++++++|.++++. .++.|..||. +.+.+..+..+.. ...+.+.
T Consensus       201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~  279 (326)
T 2ghs_A          201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFI  279 (326)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEE
T ss_pred             CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEe
Confidence            899999986  55 3     122222 12346778899999877665 4578999998 4556666665543 3344444

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.21  E-value=5.3e-09  Score=95.66  Aligned_cols=193  Identities=9%  Similarity=-0.005  Sum_probs=130.4

Q ss_pred             cEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC--eEEEEECCCCcee
Q 018784          104 IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIV  181 (350)
Q Consensus       104 ~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~iwd~~~~~~~  181 (350)
                      .+..++|+++++++++...++.|++||+....... .... ..... ++|.+.++.++++ ..++  .|.++|...+...
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~-~~~~-~~~~~-ia~~~~g~~l~~~-d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT-VHPG-FKGGK-PAVTKDKQRVYSI-GWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE-EEET-CCBCB-CEECTTSSEEEEE-BSSTTCEEEEEEGGGTTCE
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE-eecc-CCCCc-eeEecCCCcEEEE-ecCCCceEEEEEcCCCcee
Confidence            57899999999988887788999999987543321 1222 22233 7777655544444 4444  8999998766543


Q ss_pred             Eee----c-CCCCeEEEEEec-CCcEEEEEcCCcEEEEECCCcceeee----eecCC--CCc-eeEecCCCCcEEEEecC
Q 018784          182 QTL----E-TKSPVTSAEVSR-DGRYITTADGSSVKFWDANHFGLVKG----YNMPC--NTE-SASLEPKLGNIFIAGGE  248 (350)
Q Consensus       182 ~~~----~-~~~~v~~~~~~~-~~~~l~~~~~~~i~vwd~~~~~~~~~----~~~~~--~~~-~~~~~~~~~~~l~sg~~  248 (350)
                      ..+    . .......++++| ++.++++..++.|+.||..+......    .....  .+. .+.+.+..+.++++...
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~  287 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN  287 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence            343    2 334567889999 67777755567899999876543221    11111  112 66777766888999888


Q ss_pred             CCeEEEEEcccCeeEEeecCC---------------CcCEEEEEEcCCCCEEEEec-CCCcEEEecCCCC
Q 018784          249 DMWVHVFDFHTGEQIGCNKGH---------------HGPVHCVRFSPGGESYASGS-EDGTIRIWQTNPP  302 (350)
Q Consensus       249 d~~i~v~d~~~~~~~~~~~~h---------------~~~v~~l~~sp~~~~lasgs-~Dg~v~vw~~~~~  302 (350)
                      .+.|+.|+....  +..+.++               -.....++++|+|.++++-+ .+++|+.|+....
T Consensus       288 ~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G  355 (409)
T 3hrp_A          288 LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG  355 (409)
T ss_dssp             TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred             CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence            999999987643  2222222               23578999999999889988 8999999996443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.18  E-value=3.3e-11  Score=108.87  Aligned_cols=204  Identities=13%  Similarity=0.045  Sum_probs=110.0

Q ss_pred             CCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEE-E
Q 018784           72 NALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIR-T  150 (350)
Q Consensus        72 ~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~-~  150 (350)
                      ++..+++++.||.|..||..+++.+..+.. ..+.+..+..++..+++++.|+.|..||..+++............+. +
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s   86 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS   86 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence            567788899999999999999999888766 55666556677878888899999999999766543222111000000 0


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcE-EEEEcCCcEEEEECCCcceeeeeecCCC
Q 018784          151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRY-ITTADGSSVKFWDANHFGLVKGYNMPCN  229 (350)
Q Consensus       151 ~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~~i~vwd~~~~~~~~~~~~~~~  229 (350)
                      ... ..++ .+++++.|+.|+.||.++|+.+..+.....   ..++|++.. ++++.++.|+.||.++++.+..+.....
T Consensus        87 p~~-~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~  161 (369)
T 2hz6_A           87 PCR-SSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDY  161 (369)
T ss_dssp             SCC-------CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEE
T ss_pred             ceE-ecCC-EEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccc
Confidence            000 0233 455667789999999999998877765432   234455544 4555678999999998876655433211


Q ss_pred             CceeEecCC--CCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEE-EEEEcCCCC
Q 018784          230 TESASLEPK--LGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVH-CVRFSPGGE  283 (350)
Q Consensus       230 ~~~~~~~~~--~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~-~l~~sp~~~  283 (350)
                       ....+...  ....+++++.|+.|+.||..+|+.+-... ...++. ...+++++.
T Consensus       162 -~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          162 -AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YASPVVAFYVWQREGL  216 (369)
T ss_dssp             -CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CSSCEEEEEECTTSSC
T ss_pred             -cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-CCCceEEEEEecCCce
Confidence             11111110  11456778889999999999998765554 333443 344555664

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.18  E-value=3.4e-09  Score=103.33  Aligned_cols=270  Identities=13%  Similarity=0.077  Sum_probs=164.8

Q ss_pred             ccEEEEEeCCCCeeEeeCCCCceeeeccCccCC----------e-EEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee
Q 018784           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGA----------V-WSCCLDANALFSASGSADFTAKLWDALTGDEKHSF   99 (350)
Q Consensus        31 g~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~----------V-~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~   99 (350)
                      +..|..++.++.+.-+|..+|+.+..++.+...          + ..+.+  .+..++.++.|+.|..+|..+++.+..+
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            345666778899999999999998877543221          1 11122  3456677789999999999999988776


Q ss_pred             ecc---ccEeEEEEcC---CCCeEEEee------CCCeEEEEECCCCCCCCeeec-CC----------------------
Q 018784          100 EHK---HIVRACAFSE---DTHLLLTGG------FEKILRIFDLNRPDAPPREVG-NS----------------------  144 (350)
Q Consensus       100 ~h~---~~V~~~~~~~---~~~~l~sg~------~d~~v~vwd~~~~~~~~~~~~-~~----------------------  144 (350)
                      ...   .....+..+|   ++. ++.++      .++.|..||..+++....... ..                      
T Consensus       148 ~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  226 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA  226 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred             cCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence            432   1111111222   444 44443      368999999987764433211 00                      


Q ss_pred             -------CCcEEEEEEeCCCCcEEEEEeCCC-------------------eEEEEECCCCceeEeecCC----------C
Q 018784          145 -------SGSIRTVAWLHSDQTILSSCTDSG-------------------GVRLWDARSGKIVQTLETK----------S  188 (350)
Q Consensus       145 -------~~~v~~~~~~~~~~~~~~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~----------~  188 (350)
                             ......+++.+..+ +++.+..++                   .|..||.++|+.+..++..          .
T Consensus       227 w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~  305 (689)
T 1yiq_A          227 YVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQ  305 (689)
T ss_dssp             HHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCS
T ss_pred             eeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCC
Confidence                   00111355555444 455555555                   3999999999998877642          1


Q ss_pred             CeEEEEEecCCc---EEE-EEcCCcEEEEECCCcceeeeeecCCC-----------------------------------
Q 018784          189 PVTSAEVSRDGR---YIT-TADGSSVKFWDANHFGLVKGYNMPCN-----------------------------------  229 (350)
Q Consensus       189 ~v~~~~~~~~~~---~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~-----------------------------------  229 (350)
                      +........+|+   .++ ...++.++++|.++++.+........                                   
T Consensus       306 ~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~  385 (689)
T 1yiq_A          306 HMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAF  385 (689)
T ss_dssp             CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCT
T ss_pred             CcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCc
Confidence            222223333564   444 44578999999999887643322110                                   


Q ss_pred             -----CceeEecCCCCcEEEEec---------------------------------------------CCCeEEEEEccc
Q 018784          230 -----TESASLEPKLGNIFIAGG---------------------------------------------EDMWVHVFDFHT  259 (350)
Q Consensus       230 -----~~~~~~~~~~~~~l~sg~---------------------------------------------~d~~i~v~d~~~  259 (350)
                           .....+.+.. .++.+..                                             .++.|+.||+.+
T Consensus       386 ~Gg~~w~~~a~dp~~-~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t  464 (689)
T 1yiq_A          386 WGAHDWQPMSYNPDT-GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK  464 (689)
T ss_dssp             TCSSCSSCCEEETTT-TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT
T ss_pred             ccccCCCcceECCCC-CEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC
Confidence                 0012334432 3333321                                             147899999999


Q ss_pred             CeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCccc
Q 018784          260 GEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEE  306 (350)
Q Consensus       260 ~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~  306 (350)
                      |+.+-....+. ++..-.+...+.+++.|+.|+.|+.||..+.+.+-
T Consensus       465 G~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw  510 (689)
T 1yiq_A          465 QQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLW  510 (689)
T ss_dssp             TEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccce
Confidence            99876554333 23333556677889999999999999998887763

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.16  E-value=4.1e-09  Score=102.62  Aligned_cols=269  Identities=14%  Similarity=0.099  Sum_probs=165.6

Q ss_pred             cEEEEEeCCCCeeEeeCCCCceeeeccCccCC----------e-EEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee
Q 018784           32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGA----------V-WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE  100 (350)
Q Consensus        32 ~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~----------V-~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~  100 (350)
                      ..|..++.++.+.-+|..+|+.+..++.....          + ..+++  .+..++.++.|+.|..+|..+++.+..+.
T Consensus        78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~  155 (677)
T 1kb0_A           78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQN  155 (677)
T ss_dssp             TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence            35566677889999999999988776543210          1 12223  34566777889999999999999888765


Q ss_pred             cc------ccEeEEEEcCCCCeEEEeeC------CCeEEEEECCCCCCCCeeecCC------------------------
Q 018784          101 HK------HIVRACAFSEDTHLLLTGGF------EKILRIFDLNRPDAPPREVGNS------------------------  144 (350)
Q Consensus       101 h~------~~V~~~~~~~~~~~l~sg~~------d~~v~vwd~~~~~~~~~~~~~~------------------------  144 (350)
                      ..      ..+.+.-.- .+..++.++.      ++.|..||..+++.........                        
T Consensus       156 ~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~  234 (677)
T 1kb0_A          156 TFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK  234 (677)
T ss_dssp             TTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred             CCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCc
Confidence            32      112111011 2344555543      6899999998766443221110                        


Q ss_pred             -------CCcEEEEEEeCCCCcEEEEEeCCC-------------------eEEEEECCCCceeEeecCC----------C
Q 018784          145 -------SGSIRTVAWLHSDQTILSSCTDSG-------------------GVRLWDARSGKIVQTLETK----------S  188 (350)
Q Consensus       145 -------~~~v~~~~~~~~~~~~~~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~----------~  188 (350)
                             ......+++.+..+.++ .+..++                   .|..+|.++|+.+..++..          .
T Consensus       235 ~~~~~~g~~~w~~~~~d~~~~~vy-~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~  313 (677)
T 1kb0_A          235 WWEAGGGGTMWDSMTFDAELNTMY-VGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ  313 (677)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEE-EECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred             eeEeCCCcccccceeEcCCCCEEE-EECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence                   00112345555555444 444433                   5999999999998876631          1


Q ss_pred             CeEEEEEecCC---cEEEE-EcCCcEEEEECCCcceeeeeecCCCC----------------------------------
Q 018784          189 PVTSAEVSRDG---RYITT-ADGSSVKFWDANHFGLVKGYNMPCNT----------------------------------  230 (350)
Q Consensus       189 ~v~~~~~~~~~---~~l~~-~~~~~i~vwd~~~~~~~~~~~~~~~~----------------------------------  230 (350)
                      ....+....+|   ..++. ..++.+.++|..+++.+..+......                                  
T Consensus       314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~  393 (677)
T 1kb0_A          314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAH  393 (677)
T ss_dssp             CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSS
T ss_pred             CcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccccc
Confidence            12223333466   44444 45789999999998887655432110                                  


Q ss_pred             --ceeEecCCCCcEEEEecC-------------------------------------------CCeEEEEEcccCeeEEe
Q 018784          231 --ESASLEPKLGNIFIAGGE-------------------------------------------DMWVHVFDFHTGEQIGC  265 (350)
Q Consensus       231 --~~~~~~~~~~~~l~sg~~-------------------------------------------d~~i~v~d~~~~~~~~~  265 (350)
                        ....+.+. ..++.+...                                           .+.|..||+.+++.+-.
T Consensus       394 ~w~~~a~dp~-~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~  472 (677)
T 1kb0_A          394 NWHPMSFNPQ-TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS  472 (677)
T ss_dssp             CSSCCEEETT-TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred             CCCCceEcCC-CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence              02234443 344444321                                           27899999999987655


Q ss_pred             ecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCccc
Q 018784          266 NKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEE  306 (350)
Q Consensus       266 ~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~  306 (350)
                      .. +..+++...+...+.+++.++.||.+++||..+.+.+-
T Consensus       473 ~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw  512 (677)
T 1kb0_A          473 VE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW  512 (677)
T ss_dssp             EE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceee
Confidence            43 23344555566777888889999999999998777653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.14  E-value=4.7e-07  Score=77.46  Aligned_cols=246  Identities=6%  Similarity=-0.059  Sum_probs=150.1

Q ss_pred             EEEEEeCCCCeeEeeCCCCcee-----eeccCccCCeEEEEECCC-CcEEEEeeCCCeEEEeeCCCCCeeeeeec-cccE
Q 018784           33 FLVSASKDSSPMLRNGETGDWI-----GTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALTGDEKHSFEH-KHIV  105 (350)
Q Consensus        33 ~lasgs~d~~v~iw~~~~~~~~-----~~l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h-~~~V  105 (350)
                      +|+.+.. +.|+.++.......     ..+.........++++++ +.++++-...+.|.+++.........+.. -...
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p   81 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP   81 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence            3444333 35666665543221     112212234678899885 55666666788999999876544333322 2467


Q ss_pred             eEEEEcCCCCeEE-EeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeC--CCeEEEEECCCCceeE
Q 018784          106 RACAFSEDTHLLL-TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD--SGGVRLWDARSGKIVQ  182 (350)
Q Consensus       106 ~~~~~~~~~~~l~-sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~--dg~i~iwd~~~~~~~~  182 (350)
                      ..+++.+++..|+ +-...+.|.++++.... ..............+++.+.++.++++...  .+.|..+++.... ..
T Consensus        82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~  159 (267)
T 1npe_A           82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RR  159 (267)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CE
T ss_pred             cEEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cE
Confidence            8999999765554 54567899999986432 112222222467888888767777776644  4688888875432 22


Q ss_pred             eec--CCCCeEEEEEecCCcEEE-EE-cCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcc
Q 018784          183 TLE--TKSPVTSAEVSRDGRYIT-TA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (350)
Q Consensus       183 ~~~--~~~~v~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~  258 (350)
                      .+.  .-.....+++++++..|. +. ..+.|.++|...............+..+..  ..+.++++....+.|.++|..
T Consensus       160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~--d~~~lyva~~~~~~v~~~d~~  237 (267)
T 1npe_A          160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS--YGKNLYYTDWKTNSVIAMDLA  237 (267)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEE--ETTEEEEEETTTTEEEEEETT
T ss_pred             EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEE--eCCEEEEEECCCCeEEEEeCC
Confidence            221  223567899999765543 33 346899999875433222222122223333  346777777778899999999


Q ss_pred             cCeeEEeecCCC-cCEEEEEEcCCCC
Q 018784          259 TGEQIGCNKGHH-GPVHCVRFSPGGE  283 (350)
Q Consensus       259 ~~~~~~~~~~h~-~~v~~l~~sp~~~  283 (350)
                      +++.+..+.... ...+.+++.|++.
T Consensus       238 ~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          238 ISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             CCCceEEEccccccccceeeecCccC
Confidence            998887775332 3467788888764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.12  E-value=7.6e-09  Score=91.16  Aligned_cols=253  Identities=16%  Similarity=0.070  Sum_probs=154.3

Q ss_pred             CccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee-ccccEeEE
Q 018784           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRAC  108 (350)
Q Consensus        30 dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-h~~~V~~~  108 (350)
                      +|.+ ..++.+  +..+|. +++.+..+..+........+. ++. +..++.++.|..+|.. ++...... ....+.++
T Consensus        70 ~g~l-~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~-~~~-l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~  142 (330)
T 3hxj_A           70 DGTI-YFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF-EDI-LYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATP  142 (330)
T ss_dssp             TTEE-CCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE-TTE-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred             CCcE-EEecCc--EEEECC-CCcEEEEEECCCCcccCceEE-CCE-EEEEecCCEEEEEcCC-CCEEEEEcCCCceeeee
Confidence            5554 445554  777875 666655554333322223333 444 4556778999999988 76665554 33345666


Q ss_pred             EEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-
Q 018784          109 AFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-  187 (350)
Q Consensus       109 ~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-  187 (350)
                      ...+++. ++.++.++.+..||.. +...... ......+.++... .++.+.++.   +.|..+| .+++.+...... 
T Consensus       143 ~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~-~~~~~~~~~~~~d-~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~  214 (330)
T 3hxj_A          143 IVSEDGT-IYVGSNDNYLYAINPD-GTEKWRF-KTNDAITSAASIG-KDGTIYFGS---DKVYAIN-PDGTEKWNFYAGY  214 (330)
T ss_dssp             EECTTSC-EEEECTTSEEEEECTT-SCEEEEE-ECSSCCCSCCEEC-TTCCEEEES---SSEEEEC-TTSCEEEEECCSS
T ss_pred             EEcCCCE-EEEEcCCCEEEEECCC-CCEeEEE-ecCCCceeeeEEc-CCCEEEEEe---CEEEEEC-CCCcEEEEEccCC
Confidence            6676776 5567778999999986 4322222 2222334444433 345555443   7899999 777766665543 


Q ss_pred             CCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec
Q 018784          188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK  267 (350)
Q Consensus       188 ~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~  267 (350)
                      ..+.++...+++.+.+++.++.+..+|. +...+..+.............. +..+..++.++.|..+|. +++.+....
T Consensus       215 ~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~g~l~v~t~~ggl~~~d~-~g~~~~~~~  291 (330)
T 3hxj_A          215 WTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN-TDTIYFGSYDGHLYAINP-DGTEKWNFE  291 (330)
T ss_dssp             CCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECT-TSCEEEECTTCEEEEECT-TSCEEEEEE
T ss_pred             cceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcC-CCeEEEecCCCCEEEECC-CCcEEEEEE
Confidence            4567778888988888888788888875 4444444443322222112222 345667778888999996 677665555


Q ss_pred             CCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784          268 GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       268 ~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~  301 (350)
                      .....+.++...+++. |..|+.+|.+++.....
T Consensus       292 ~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          292 TGSWIIATPVIDENGT-IYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             CSSCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred             cCCccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence            4555677777877776 45588999999986543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.09  E-value=4.2e-08  Score=83.53  Aligned_cols=202  Identities=12%  Similarity=0.121  Sum_probs=139.5

Q ss_pred             eeeeeeccc--cEeEEEEcCCCCeEEEeeC--CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784           95 EKHSFEHKH--IVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (350)
Q Consensus        95 ~~~~~~h~~--~V~~~~~~~~~~~l~sg~~--d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i  170 (350)
                      .+.++.|..  ....++|++++.+.++.+.  ++.|+++|+.+++...............+++.  ++.++++...++.+
T Consensus        11 vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v   88 (266)
T 2iwa_A           11 VLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIG   88 (266)
T ss_dssp             EEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEE
T ss_pred             EEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEE
Confidence            344556654  3689999998755555443  68999999987664433322222223344443  55777777888999


Q ss_pred             EEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceeeeeecCCC------CceeEecCCCCcE
Q 018784          171 RLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCN------TESASLEPKLGNI  242 (350)
Q Consensus       171 ~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  242 (350)
                      .++|..+.+.+.++... ..  ...+++|++.+..++ ++.|.++|..+++.++.......      .....+.  ++.+
T Consensus        89 ~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~l  164 (266)
T 2iwa_A           89 FIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEV  164 (266)
T ss_dssp             EEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEE
T ss_pred             EEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEE
Confidence            99999999998888654 22  233666776554444 56899999999888877665322      1122233  4677


Q ss_pred             EEEecCCCeEEEEEcccCeeEEeecCC-------------CcCEEEEEEcCCCC-EEEEecCCCcEEEecCCCC
Q 018784          243 FIAGGEDMWVHVFDFHTGEQIGCNKGH-------------HGPVHCVRFSPGGE-SYASGSEDGTIRIWQTNPP  302 (350)
Q Consensus       243 l~sg~~d~~i~v~d~~~~~~~~~~~~h-------------~~~v~~l~~sp~~~-~lasgs~Dg~v~vw~~~~~  302 (350)
                      ++....++.|.+.|..+++.+..+.-.             ......++|+|+++ +++++.....|.+-++...
T Consensus       165 yvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          165 WANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            877778899999999999988776421             13568999999975 5778888899999988654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.07  E-value=6.6e-09  Score=93.19  Aligned_cols=244  Identities=9%  Similarity=-0.080  Sum_probs=155.9

Q ss_pred             EEEecccCCCccEEEEEe----------CCCCeeEeeCCCCceeeeccCcc-------CCeEEEEECCCCcEEEEeeC--
Q 018784           21 DLFYSPITPDGFFLVSAS----------KDSSPMLRNGETGDWIGTFEGHK-------GAVWSCCLDANALFSASGSA--   81 (350)
Q Consensus        21 ~~~~~~~s~dg~~lasgs----------~d~~v~iw~~~~~~~~~~l~gH~-------~~V~~v~~~~~~~~l~s~s~--   81 (350)
                      .+.|+|   ||++|..+.          .+++|.+||..+++.+.++.-+.       ..-..++++||+++++.+..  
T Consensus        69 ~i~~sp---Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~  145 (368)
T 1mda_H           69 LAVAGH---SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS  145 (368)
T ss_dssp             EEEECT---TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS
T ss_pred             ceEECC---CCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCC
Confidence            687876   998888776          37889999999999999875330       12346799999998887754  


Q ss_pred             CCeEEE--eeCCCCCeeeeeeccccEeEEEEcCCCC-eEEEeeCCCeEEEEECCC-----CCCCC---eeecCCCCcEEE
Q 018784           82 DFTAKL--WDALTGDEKHSFEHKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNR-----PDAPP---REVGNSSGSIRT  150 (350)
Q Consensus        82 Dg~v~v--Wd~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~sg~~d~~v~vwd~~~-----~~~~~---~~~~~~~~~v~~  150 (350)
                      +..|.+  +|..+   ...+.-.+.   ..+.|+++ .+++.+.|+.+.+.|+..     +....   ....-...+.  
T Consensus       146 ~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--  217 (368)
T 1mda_H          146 SAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--  217 (368)
T ss_dssp             SCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE--
T ss_pred             CCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc--
Confidence            467889  99877   333332221   12234443 345566788888888765     11110   0011111222  


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEECCCCc--eeEeecCC-----------CCeEEEEEecCCcEEEEE-c-C--------
Q 018784          151 VAWLHSDQTILSSCTDSGGVRLWDARSGK--IVQTLETK-----------SPVTSAEVSRDGRYITTA-D-G--------  207 (350)
Q Consensus       151 ~~~~~~~~~~~~s~~~dg~i~iwd~~~~~--~~~~~~~~-----------~~v~~~~~~~~~~~l~~~-~-~--------  207 (350)
                       . .+.++.++....  +++.+.|+.+..  .+..+...           .....+.++|+++.+..+ . .        
T Consensus       218 -~-~~~~~~~~~vs~--~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~  293 (368)
T 1mda_H          218 -Q-ANYPGMLVWAVA--SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAA  293 (368)
T ss_dssp             -E-ETTTTEEEECBS--SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCE
T ss_pred             -c-cccCCEEEEEcC--CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccC
Confidence             2 455555555443  899999986542  22222211           111226799998766543 2 2        


Q ss_pred             CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEec-CCCeEEEEEcccCeeEEeecCCCcCEEEEEEcC
Q 018784          208 SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG-EDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSP  280 (350)
Q Consensus       208 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~-~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp  280 (350)
                      ..+.++|+.+.+.+..+........+.+.++...++++.. .++.|.++|+.+++.+.++..... .+.+++.+
T Consensus       294 ~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~  366 (368)
T 1mda_H          294 ENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQN  366 (368)
T ss_dssp             EEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred             CCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence            3567999999998888877666677777775445777777 699999999999999988764433 34555543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.99  E-value=1.4e-08  Score=95.06  Aligned_cols=248  Identities=11%  Similarity=0.096  Sum_probs=164.9

Q ss_pred             eEEEecccCCCccEEEEEeCC-CCeeEeeCCCCceeeeccC-ccCCeEEEEE-C-CCCcEEEEee---------------
Q 018784           20 VDLFYSPITPDGFFLVSASKD-SSPMLRNGETGDWIGTFEG-HKGAVWSCCL-D-ANALFSASGS---------------   80 (350)
Q Consensus        20 ~~~~~~~~s~dg~~lasgs~d-~~v~iw~~~~~~~~~~l~g-H~~~V~~v~~-~-~~~~~l~s~s---------------   80 (350)
                      -.+.+-..++||++|.....+ ..|.+.|+.+.++...++= -......+++ + |++.+++.++               
T Consensus        90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~  169 (595)
T 1fwx_A           90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  169 (595)
T ss_dssp             EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccc
Confidence            345555566789887666554 4588899999998874431 1234678887 5 8888877763               


Q ss_pred             ---CCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCC---------------eEEEEECCCCCCCCeeec
Q 018784           81 ---ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK---------------ILRIFDLNRPDAPPREVG  142 (350)
Q Consensus        81 ---~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~---------------~v~vwd~~~~~~~~~~~~  142 (350)
                         .++.+-+.|..+.+....+.-.+....++++|+|+++++.+.+.               .|.++|..+..       
T Consensus       170 ~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~-------  242 (595)
T 1fwx_A          170 VANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE-------  242 (595)
T ss_dssp             GGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH-------
T ss_pred             ccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee-------
Confidence               34689999999888777766544567788999999999888653               23333321100       


Q ss_pred             CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCC--Cce-eEeecCCCCeEEEEEecCCcEEEEEc--CCcEEEEECCC
Q 018784          143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS--GKI-VQTLETKSPVTSAEVSRDGRYITTAD--GSSVKFWDANH  217 (350)
Q Consensus       143 ~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~--~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~vwd~~~  217 (350)
                               .+.+.+....+     +.|.+.|.++  ++. +..+........+.++|||+++.+++  ..+|.++|..+
T Consensus       243 ---------~~v~~Gk~~~i-----~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~  308 (595)
T 1fwx_A          243 ---------KAIAAGDYQEL-----NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  308 (595)
T ss_dssp             ---------HHHHHTCSEEE-----TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             ---------EeccCCCeeEE-----CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcc
Confidence                     00112222222     4599999998  555 56665555566789999999987775  46899999986


Q ss_pred             cc------------eeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEccc----------CeeEEeecCCCcCE--
Q 018784          218 FG------------LVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT----------GEQIGCNKGHHGPV--  273 (350)
Q Consensus       218 ~~------------~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~----------~~~~~~~~~h~~~v--  273 (350)
                      ..            .+........+.-..|.++ |..+++.-.|+.|.+||+..          ...+..+..|..+-  
T Consensus       309 ~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~d-G~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~  387 (595)
T 1fwx_A          309 FDAVFYENADPRSAVVAEPELGLGPLHTAFDGR-GNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHL  387 (595)
T ss_dssp             HHHHHHSCCCGGGGEEECCBCCSCEEEEEECTT-SEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEE
T ss_pred             cccccccccCcccceEEEcCCCCCcceEEECCC-CeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccc
Confidence            53            2222333334455567765 57788888999999999987          44555665554332  


Q ss_pred             ---EEEEEcCCCCEEEEec
Q 018784          274 ---HCVRFSPGGESYASGS  289 (350)
Q Consensus       274 ---~~l~~sp~~~~lasgs  289 (350)
                         ..+.++|||++|++..
T Consensus       388 ~~~~g~t~~~DGk~l~~~N  406 (595)
T 1fwx_A          388 KTVMGETLDATNDWLVCLS  406 (595)
T ss_dssp             EETTTTSTTCCSSEEEEEE
T ss_pred             eeccceEeCCCCCEEEEcC
Confidence               2235689999988754

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.98  E-value=2.4e-08  Score=87.98  Aligned_cols=250  Identities=14%  Similarity=0.062  Sum_probs=151.8

Q ss_pred             CccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeecccc-EeEE
Q 018784           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRAC  108 (350)
Q Consensus        30 dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~-V~~~  108 (350)
                      +|. |..++.++.+..+| .+++.+..+..+...+.++....++.+.+. +.+  |..+|. +++....+..... ....
T Consensus        30 ~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~-t~~--l~~~d~-~g~~~~~~~~~~~~~~~~  103 (330)
T 3hxj_A           30 NGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFG-SDK--VYAINP-DGTEKWRFDTKKAIVSDF  103 (330)
T ss_dssp             TSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCS-SCE--EEEECC-CGGGGGGSCC-----CCE
T ss_pred             CCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEe-cCc--EEEECC-CCcEEEEEECCCCcccCc
Confidence            454 56678889999999 889888777665566677778778876653 333  888886 5554433332221 2222


Q ss_pred             EEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-
Q 018784          109 AFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-  187 (350)
Q Consensus       109 ~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-  187 (350)
                      .+.  +..+..++.++.+..+|.. +...... ......+.++... .++.++ .++.++.|..+|.. ++.+...... 
T Consensus       104 ~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~-~~~~~~~~~~~~~-~~g~l~-vgt~~~~l~~~d~~-g~~~~~~~~~~  176 (330)
T 3hxj_A          104 TIF--EDILYVTSMDGHLYAINTD-GTEKWRF-KTKKAIYATPIVS-EDGTIY-VGSNDNYLYAINPD-GTEKWRFKTND  176 (330)
T ss_dssp             EEE--TTEEEEECTTSEEEEECTT-SCEEEEE-ECSSCCCSCCEEC-TTSCEE-EECTTSEEEEECTT-SCEEEEEECSS
T ss_pred             eEE--CCEEEEEecCCEEEEEcCC-CCEEEEE-cCCCceeeeeEEc-CCCEEE-EEcCCCEEEEECCC-CCEeEEEecCC
Confidence            233  4567778888999999976 3322221 2222233333333 344444 45677899999998 8776665543 


Q ss_pred             CCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCc-eeEecCCCCcEEEEecCCCeEEEEEcccCeeEEee
Q 018784          188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCN  266 (350)
Q Consensus       188 ~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~  266 (350)
                      ..+.++.+.+++.+++++  +.+..+| .+......+....... ..... .++ .+..++.++.|..+|. +++.+...
T Consensus       177 ~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~-~~g-~l~v~t~~~gl~~~~~-~g~~~~~~  250 (330)
T 3hxj_A          177 AITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAIS-EDG-TIYVTSLDGHLYAINP-DGTEKWRF  250 (330)
T ss_dssp             CCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEEC-TTS-CEEEEETTTEEEEECT-TSCEEEEE
T ss_pred             CceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEEC-CCC-eEEEEcCCCeEEEECC-CCCEeEEe
Confidence            345566777888877766  7899999 5555554444332222 22222 233 4555666788888874 55555444


Q ss_pred             cCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          267 KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       267 ~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                      ......+.++.+.+++. |..++.+|.|..+|.
T Consensus       251 ~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~  282 (330)
T 3hxj_A          251 KTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP  282 (330)
T ss_dssp             ECSSCCCSCCEECTTSC-EEEECTTCEEEEECT
T ss_pred             eCCCCccccceEcCCCe-EEEecCCCCEEEECC
Confidence            43333344555655664 666788888888885

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.98  E-value=1.9e-07  Score=89.05  Aligned_cols=252  Identities=14%  Similarity=0.065  Sum_probs=150.8

Q ss_pred             ccEEEEEeCCCCeeEeeCCCCceeeecc--CccC--CeEE-EEECCCCcEEEEeeC-----CCeEEEeeCCCCCeeeeee
Q 018784           31 GFFLVSASKDSSPMLRNGETGDWIGTFE--GHKG--AVWS-CCLDANALFSASGSA-----DFTAKLWDALTGDEKHSFE  100 (350)
Q Consensus        31 g~~lasgs~d~~v~iw~~~~~~~~~~l~--gH~~--~V~~-v~~~~~~~~l~s~s~-----Dg~v~vWd~~~~~~~~~~~  100 (350)
                      +..|..++.|+.+..+|..+|+.+..+.  +|..  .+.+ ..+ .++.+++..+.     ++.|..+|..+++.+..+.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE-ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence            4467778889999999999998876543  2211  1111 011 14555554442     8999999999999887664


Q ss_pred             ccccE---------------------------------------eEEEEcCCCCeEEEeeCC----------------Ce
Q 018784          101 HKHIV---------------------------------------RACAFSEDTHLLLTGGFE----------------KI  125 (350)
Q Consensus       101 h~~~V---------------------------------------~~~~~~~~~~~l~sg~~d----------------~~  125 (350)
                      .....                                       ..+++.+....++.+..+                +.
T Consensus       194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~  273 (571)
T 2ad6_A          194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT  273 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred             cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence            32111                                       124566665666655432                35


Q ss_pred             EEEEECCCCCCCCeeec-CCC--------CcEEEEEEeCCCC---cEEEEEeCCCeEEEEECCCCceeEeecCCC-----
Q 018784          126 LRIFDLNRPDAPPREVG-NSS--------GSIRTVAWLHSDQ---TILSSCTDSGGVRLWDARSGKIVQTLETKS-----  188 (350)
Q Consensus       126 v~vwd~~~~~~~~~~~~-~~~--------~~v~~~~~~~~~~---~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~-----  188 (350)
                      |..+|..+++....... .+.        ..+. +... .++   .+++.+..+|.+.++|.++|+.+.......     
T Consensus       274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~-~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQP-VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEE-ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEecCCCcEEEEecCCCCcccccccCCCCEE-Eecc-cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            88889887665433221 111        1111 1111 133   456678888999999999999877654321     


Q ss_pred             ---------Ce--------------------------EEEEEecCCcEEEEE----------------------------
Q 018784          189 ---------PV--------------------------TSAEVSRDGRYITTA----------------------------  205 (350)
Q Consensus       189 ---------~v--------------------------~~~~~~~~~~~l~~~----------------------------  205 (350)
                               ++                          ..++++|+..++...                            
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  431 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence                     11                          234667765544322                            


Q ss_pred             ----------cCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCc-CEE
Q 018784          206 ----------DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHG-PVH  274 (350)
Q Consensus       206 ----------~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~-~v~  274 (350)
                                ..+.|..||+.+++.+..+..........+.. .+.++..++.|+.|+.||..+|+.+-.+..... ...
T Consensus       432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t-~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~  510 (571)
T 2ad6_A          432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGS  510 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSC
T ss_pred             ccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEE-CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEee
Confidence                      23678999999888777665443222222221 245667789999999999999998876653221 112


Q ss_pred             EEEEcCCCCEEE
Q 018784          275 CVRFSPGGESYA  286 (350)
Q Consensus       275 ~l~~sp~~~~la  286 (350)
                      -+.+..+++.++
T Consensus       511 p~~~~~~G~~yv  522 (571)
T 2ad6_A          511 PMTYSFKGKQYI  522 (571)
T ss_dssp             CEEEEETTEEEE
T ss_pred             eEEEEECCEEEE
Confidence            234556776543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.97  E-value=3.5e-07  Score=77.86  Aligned_cols=193  Identities=11%  Similarity=0.042  Sum_probs=132.9

Q ss_pred             CceeEEEecccCCCccEEEEEeC--CCCeeEeeCCCCceeeecc--CccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC
Q 018784           17 RPVVDLFYSPITPDGFFLVSASK--DSSPMLRNGETGDWIGTFE--GHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (350)
Q Consensus        17 ~~v~~~~~~~~s~dg~~lasgs~--d~~v~iw~~~~~~~~~~l~--gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~   92 (350)
                      .....+.|++   |+.+.++.+.  +++|++.|..+++.+.++.  .+ .....+++.. +.+.++.-.++.+.++|..+
T Consensus        21 ~f~~Gl~~~~---dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~-~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t   95 (266)
T 2iwa_A           21 AFTQGLVYAE---NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDS-YFGEGLTLLN-EKLYQVVWLKNIGFIYDRRT   95 (266)
T ss_dssp             CCEEEEEECS---TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTT-CCEEEEEEET-TEEEEEETTCSEEEEEETTT
T ss_pred             CCcccEEEeC---CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCC-cceEEEEEeC-CEEEEEEecCCEEEEEECCC
Confidence            3467899885   7766666553  5789999999999988764  22 2223455543 45667777899999999999


Q ss_pred             CCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecC-C---CCcEEEEEEeCCCCcEEEEEeCCC
Q 018784           93 GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN-S---SGSIRTVAWLHSDQTILSSCTDSG  168 (350)
Q Consensus        93 ~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~-~---~~~v~~~~~~~~~~~~~~s~~~dg  168 (350)
                      .+.+..+... .-....++++++.++++..++.|.++|..+.+........ .   -..+..+.|.  ++.+++....++
T Consensus        96 ~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~~  172 (266)
T 2iwa_A           96 LSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQTD  172 (266)
T ss_dssp             TEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSS
T ss_pred             CcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEEEEecCCCC
Confidence            8887777544 1123446678887877777899999998765433222111 1   1235677776  456777777788


Q ss_pred             eEEEEECCCCceeEeecCC--------------CCeEEEEEecCCcEE-EEEc-CCcEEEEECCC
Q 018784          169 GVRLWDARSGKIVQTLETK--------------SPVTSAEVSRDGRYI-TTAD-GSSVKFWDANH  217 (350)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~~--------------~~v~~~~~~~~~~~l-~~~~-~~~i~vwd~~~  217 (350)
                      .|.+.|+.+++.+..+...              ...+.++++|+++.+ +++. ...+.+.++..
T Consensus       173 ~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          173 CIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             EEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             eEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            9999999999998888642              245889999998654 4443 45677766543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.93  E-value=1.5e-07  Score=91.49  Aligned_cols=271  Identities=14%  Similarity=0.083  Sum_probs=159.1

Q ss_pred             cEEEEEeCCCCeeEeeCCCCceeeeccCccCC----------e-EEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee
Q 018784           32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGA----------V-WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE  100 (350)
Q Consensus        32 ~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~----------V-~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~  100 (350)
                      ..|..++.++.+.-+|..+|+.+..++.....          + ..+++  .+..++.++.|+.|..+|..+++.+..+.
T Consensus        67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~  144 (668)
T 1kv9_A           67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ  144 (668)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence            35566777889999999999988776543211          0 11222  23456667889999999999999887764


Q ss_pred             cccc--EeEEEEcC--CCCeEEEeeC------CCeEEEEECCCCCCCCeeecC--C------------------------
Q 018784          101 HKHI--VRACAFSE--DTHLLLTGGF------EKILRIFDLNRPDAPPREVGN--S------------------------  144 (350)
Q Consensus       101 h~~~--V~~~~~~~--~~~~l~sg~~------d~~v~vwd~~~~~~~~~~~~~--~------------------------  144 (350)
                      ....  ...+..+|  .+..++.+..      ++.|..+|..+++........  .                        
T Consensus       145 ~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~  224 (668)
T 1kv9_A          145 TTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWK  224 (668)
T ss_dssp             CSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHH
T ss_pred             cCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceee
Confidence            3110  00111111  1334555433      588999998876644322110  0                        


Q ss_pred             ----CCcEEEEEEeCCCCcEEEEEeCCC-------------------eEEEEECCCCceeEeecCC----------CCeE
Q 018784          145 ----SGSIRTVAWLHSDQTILSSCTDSG-------------------GVRLWDARSGKIVQTLETK----------SPVT  191 (350)
Q Consensus       145 ----~~~v~~~~~~~~~~~~~~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~----------~~v~  191 (350)
                          ......+++.+..+ +++.+..++                   .|..+|.++|+.+...+..          .+..
T Consensus       225 ~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~  303 (668)
T 1kv9_A          225 LGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT  303 (668)
T ss_dssp             HCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred             eCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence                00111245554444 444455444                   4999999999998877642          2333


Q ss_pred             EEEEecCCc----EEEEEcCCcEEEEECCCcceeeeeecCCCC-------------------------------------
Q 018784          192 SAEVSRDGR----YITTADGSSVKFWDANHFGLVKGYNMPCNT-------------------------------------  230 (350)
Q Consensus       192 ~~~~~~~~~----~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~-------------------------------------  230 (350)
                      ...+..+|+    +++...++.+.++|..+++.+.........                                     
T Consensus       304 ~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w  383 (668)
T 1kv9_A          304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNW  383 (668)
T ss_dssp             EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCS
T ss_pred             EEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCC
Confidence            333444665    334456789999999988876333221100                                     


Q ss_pred             ceeEecCCCCcEEE-----------------------------------EecCCCeEEEEEcccCeeEEeecCCCcCEEE
Q 018784          231 ESASLEPKLGNIFI-----------------------------------AGGEDMWVHVFDFHTGEQIGCNKGHHGPVHC  275 (350)
Q Consensus       231 ~~~~~~~~~~~~l~-----------------------------------sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~  275 (350)
                      ....+.+..+.+++                                   ....++.|..||+.+|+.+-....+ .+...
T Consensus       384 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~  462 (668)
T 1kv9_A          384 HSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNG  462 (668)
T ss_dssp             SCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCC
T ss_pred             CcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcC
Confidence            01223333222222                                   1123488999999999876444322 22333


Q ss_pred             EEEcCCCCEEEEecCCCcEEEecCCCCCccc
Q 018784          276 VRFSPGGESYASGSEDGTIRIWQTNPPNHEE  306 (350)
Q Consensus       276 l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~  306 (350)
                      ..+...+.+++.|+.|+.|+.||....+...
T Consensus       463 ~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~  493 (668)
T 1kv9_A          463 GTLSTAGNLVFQGTAAGQMHAYSADKGEALW  493 (668)
T ss_dssp             CEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ceeEeCCCEEEEECCcccchhhhhhcChhhe
Confidence            3344467788889999999999988776653

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.91  E-value=7.5e-07  Score=86.54  Aligned_cols=255  Identities=15%  Similarity=0.131  Sum_probs=155.6

Q ss_pred             ccEEEEEeCCCCeeEeeCCCCceeeeccCcc----CCeEE-EEECCCCcEEEEee-----CCCeEEEeeCCCCCeeeeee
Q 018784           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHK----GAVWS-CCLDANALFSASGS-----ADFTAKLWDALTGDEKHSFE  100 (350)
Q Consensus        31 g~~lasgs~d~~v~iw~~~~~~~~~~l~gH~----~~V~~-v~~~~~~~~l~s~s-----~Dg~v~vWd~~~~~~~~~~~  100 (350)
                      +..|+.++.|+.+..+|.++|+.+..+....    ..+.+ ..+ .++.+++..+     .+|.|..+|..+++.+..+.
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            4467778899999999999999887665321    11110 011 1455554433     26999999999999887764


Q ss_pred             cc----c----------------------------cEeEEEEcCCCCeEEEeeCCC-------------------eEEEE
Q 018784          101 HK----H----------------------------IVRACAFSEDTHLLLTGGFEK-------------------ILRIF  129 (350)
Q Consensus       101 h~----~----------------------------~V~~~~~~~~~~~l~sg~~d~-------------------~v~vw  129 (350)
                      ..    .                            ....+++.|...+++.+..++                   .|..+
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            21    0                            012467888888888887765                   38888


Q ss_pred             ECCCCCCCCeeecC-CC-------CcEEEEEEeCCCC--cEEEEEeCCCeEEEEECCCCceeEeecCCC-----------
Q 018784          130 DLNRPDAPPREVGN-SS-------GSIRTVAWLHSDQ--TILSSCTDSGGVRLWDARSGKIVQTLETKS-----------  188 (350)
Q Consensus       130 d~~~~~~~~~~~~~-~~-------~~v~~~~~~~~~~--~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~-----------  188 (350)
                      |+.+++........ +.       ...........+.  ..++.++.+|.+.++|.++|+.+.......           
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~  355 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT  355 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred             cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence            98877654433221 21       1222111111222  257788899999999999999874332110           


Q ss_pred             --C------------------------eEEEEEecCCcEEEEE-------------------------------------
Q 018784          189 --P------------------------VTSAEVSRDGRYITTA-------------------------------------  205 (350)
Q Consensus       189 --~------------------------v~~~~~~~~~~~l~~~-------------------------------------  205 (350)
                        +                        ...++++|+..++...                                     
T Consensus       356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~  435 (668)
T 1kv9_A          356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV  435 (668)
T ss_dssp             CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred             CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence              0                        0125667765443320                                     


Q ss_pred             cCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCE-EEEEEcCCCC-
Q 018784          206 DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPV-HCVRFSPGGE-  283 (350)
Q Consensus       206 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v-~~l~~sp~~~-  283 (350)
                      .++.|..||+.+++.+..+..........+.. .+.++++|+.|+.++.||..+|+.+..+....... .-+.+..+|+ 
T Consensus       436 ~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~  514 (668)
T 1kv9_A          436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ  514 (668)
T ss_dssp             CEEEEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             ccceEEEEeCCCCcEEEEccCCCCCcCceeEe-CCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEE
Confidence            12679999999998877665543322222222 36788888999999999999999987765432211 2233445665 


Q ss_pred             EEEE
Q 018784          284 SYAS  287 (350)
Q Consensus       284 ~las  287 (350)
                      +++.
T Consensus       515 yva~  518 (668)
T 1kv9_A          515 YVAI  518 (668)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.90  E-value=6.6e-07  Score=75.38  Aligned_cols=189  Identities=14%  Similarity=0.158  Sum_probs=125.3

Q ss_pred             eeeeeccc--cEeEEEEcCCCCeEEEeeCCC--eEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEE
Q 018784           96 KHSFEHKH--IVRACAFSEDTHLLLTGGFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (350)
Q Consensus        96 ~~~~~h~~--~V~~~~~~~~~~~l~sg~~d~--~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~  171 (350)
                      +.++.|..  ....+.|+ ++.+..+.+.++  .|+++|+.+++...........-...++.  .++++......++.+.
T Consensus        34 v~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~~v~  110 (262)
T 3nol_A           34 VHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNGLGF  110 (262)
T ss_dssp             EEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEE
T ss_pred             EEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCCEEE
Confidence            34556654  45889998 666667777765  89999998776543332222111223443  3556777777789999


Q ss_pred             EEECCCCceeEeecCCCCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceeeeeecCCCCce----eEecCCCCcEEEEe
Q 018784          172 LWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES----ASLEPKLGNIFIAG  246 (350)
Q Consensus       172 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~sg  246 (350)
                      ++|..+.+.+.++.....-  ..++++++.|..++ .+.|.++|..+++.+...........    ..+...++++++..
T Consensus       111 v~D~~t~~~~~ti~~~~eG--~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~  188 (262)
T 3nol_A          111 VWNIRNLRQVRSFNYDGEG--WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANV  188 (262)
T ss_dssp             EEETTTCCEEEEEECSSCC--CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred             EEECccCcEEEEEECCCCc--eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEE
Confidence            9999999999988864422  23445666555554 56799999999988877665321111    01122257888888


Q ss_pred             cCCCeEEEEEcccCeeEEeecCC------------CcCEEEEEEcCCCCEEEEec
Q 018784          247 GEDMWVHVFDFHTGEQIGCNKGH------------HGPVHCVRFSPGGESYASGS  289 (350)
Q Consensus       247 ~~d~~i~v~d~~~~~~~~~~~~h------------~~~v~~l~~sp~~~~lasgs  289 (350)
                      ..++.|.+.|..+|+.+..+...            ....+.|+|+|+++.|...+
T Consensus       189 w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          189 WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            88999999999999987765421            12458999999876554433

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.90  E-value=1.1e-07  Score=84.78  Aligned_cols=188  Identities=9%  Similarity=-0.017  Sum_probs=123.8

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeC-----CCCeeEeeCCCCceeeeccC------ccCCeEEEEECCC-CcEEEEee-
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASK-----DSSPMLRNGETGDWIGTFEG------HKGAVWSCCLDAN-ALFSASGS-   80 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~-----d~~v~iw~~~~~~~~~~l~g------H~~~V~~v~~~~~-~~~l~s~s-   80 (350)
                      +|...+..++|++   +|++.++-+.     +..|.+||..+++.+..+.-      +......++++++ +...++-. 
T Consensus        64 ~~~~~p~gv~~d~---~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~  140 (343)
T 2qe8_A           64 ITFDTVLGIKSDG---NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPA  140 (343)
T ss_dssp             CCCSCEEEEEECS---SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECC
T ss_pred             cceeEeeEEEEcC---CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCc
Confidence            5667889999886   8887776544     57899999999987766542      2234678899875 55666665 


Q ss_pred             --CCCeEEEeeCCCCCeeeeeec------------------------------cccEeEEEEcCCCCeEEEeeCCC-eEE
Q 018784           81 --ADFTAKLWDALTGDEKHSFEH------------------------------KHIVRACAFSEDTHLLLTGGFEK-ILR  127 (350)
Q Consensus        81 --~Dg~v~vWd~~~~~~~~~~~h------------------------------~~~V~~~~~~~~~~~l~sg~~d~-~v~  127 (350)
                        .++.|.+||..+++....+..                              ...+..++|+|+++.|+.+..++ .+.
T Consensus       141 ~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~  220 (343)
T 2qe8_A          141 PDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMY  220 (343)
T ss_dssp             SGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEE
T ss_pred             cCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEE
Confidence              689999999887765443311                              02367899999999888877665 444


Q ss_pred             EEECC---CCCCC-------CeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC--CCCeEEEEE
Q 018784          128 IFDLN---RPDAP-------PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET--KSPVTSAEV  195 (350)
Q Consensus       128 vwd~~---~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~  195 (350)
                      .++..   .+...       .... .+.+....+++.+ ++.++++...++.|.+||..+++.......  -.....+++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~  298 (343)
T 2qe8_A          221 RIKSADLSNLQLTDAELGSKIERY-SEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNF  298 (343)
T ss_dssp             EEEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEE
T ss_pred             EEEHHHhcCCCCChhhhhcceEec-ccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEE
Confidence            44421   11100       0111 1122344566654 567888888889999999856654333322  234788999


Q ss_pred             ecCCcEEEEEc
Q 018784          196 SRDGRYITTAD  206 (350)
Q Consensus       196 ~~~~~~l~~~~  206 (350)
                      .++++++++..
T Consensus       299 ~~~g~l~v~~~  309 (343)
T 2qe8_A          299 GSDGYLYFDCN  309 (343)
T ss_dssp             CTTSCEEEEEC
T ss_pred             CCCCcEEEEeC
Confidence            99888776654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.89  E-value=9.3e-06  Score=69.27  Aligned_cols=204  Identities=9%  Similarity=-0.048  Sum_probs=130.5

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCC-CcEEEEeeCCCeEEEeeCCCCCee
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALTGDEK   96 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~vWd~~~~~~~   96 (350)
                      .+.++++++  .++.+.++-..++.|..++.........+.........++++++ +.+.++-...+.|.+++.......
T Consensus        37 ~~~gi~~d~--~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~  114 (267)
T 1npe_A           37 VIIGLAFDC--VDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR  114 (267)
T ss_dssp             EEEEEEEET--TTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             cEEEEEEec--CCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE
Confidence            456787875  13456666667788999998765544333332345678999986 556666667789999998644332


Q ss_pred             eeeecc-ccEeEEEEcCCCCeEEEeeC---CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEE
Q 018784           97 HSFEHK-HIVRACAFSEDTHLLLTGGF---EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (350)
Q Consensus        97 ~~~~h~-~~V~~~~~~~~~~~l~sg~~---d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i  172 (350)
                      ...... .....++++|++..|+.+..   .+.|..++++... ..............+++.+.++.++++....+.|..
T Consensus       115 ~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~  193 (267)
T 1npe_A          115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC  193 (267)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEE
Confidence            222222 45789999997665554443   4688888876322 111211223467888888777788888888889999


Q ss_pred             EECCCCceeEeecCCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeee
Q 018784          173 WDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYN  225 (350)
Q Consensus       173 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~  225 (350)
                      +|+........+........+++. .+.++++. .++.|..+|..+++.+..+.
T Consensus       194 ~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          194 LNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             EETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             EecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            999765443333333334566655 34444444 35789999998877766654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.87  E-value=1.9e-05  Score=78.33  Aligned_cols=272  Identities=10%  Similarity=0.088  Sum_probs=165.0

Q ss_pred             eeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeec-cCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee
Q 018784           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF-EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH   97 (350)
Q Consensus        19 v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l-~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~   97 (350)
                      |.++...+   +|.+.+ |+.++-+..|+..++++.... ..+...|.++....++.+.+....+ .+.+||..+++...
T Consensus       175 i~~i~~d~---~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~-Gl~~~~~~~~~~~~  249 (795)
T 4a2l_A          175 IASTLYRQ---GDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGA-GLFLINPKTKEIKN  249 (795)
T ss_dssp             CEEEEEEE---TTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSS-CEEEEETTTTEEEE
T ss_pred             eEEEEECC---CCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCC-CeEEEeCCCCeEEE
Confidence            66676654   666555 566556888888777664432 2235678888888888877754334 47888977654332


Q ss_pred             eee--------ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee------ecCCCCcEEEEEEeCCCCcEEEE
Q 018784           98 SFE--------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE------VGNSSGSIRTVAWLHSDQTILSS  163 (350)
Q Consensus        98 ~~~--------h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~s  163 (350)
                      ...        ....|.++...++|.+.+ |..+ .|.+||..+.......      ..-....|.++...+ ++.+. .
T Consensus       250 ~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g~lW-i  325 (795)
T 4a2l_A          250 YLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS-QGGMW-L  325 (795)
T ss_dssp             ECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT-TSCEE-E
T ss_pred             eecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC-CcCEE-E
Confidence            211        135699999888887554 4444 5888887543211000      011235688886554 34443 3


Q ss_pred             EeCCCeEEEEECCCCceeEeec-------CCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeee--------cCC
Q 018784          164 CTDSGGVRLWDARSGKIVQTLE-------TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYN--------MPC  228 (350)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~--------~~~  228 (350)
                      |+.++.|..++..++.......       ....|.++...++|.+.++..++.|..||..+.....-..        ...
T Consensus       326 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~  405 (795)
T 4a2l_A          326 GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGS  405 (795)
T ss_dssp             EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSC
T ss_pred             EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCC
Confidence            5566789999876554322111       1346889999999999888888789999987654322111        111


Q ss_pred             CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec----CCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784          229 NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK----GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       229 ~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~----~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~  301 (350)
                      ...........+++|..|+.++-|.+||..+++......    .....|.++...+++.+.+... + -|.+|+...
T Consensus       406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~  480 (795)
T 4a2l_A          406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQ  480 (795)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTT
T ss_pred             ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCC
Confidence            222222222345536677777779999988776443221    2345799999988888665443 4 477777543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.87  E-value=1.5e-06  Score=78.77  Aligned_cols=232  Identities=13%  Similarity=0.070  Sum_probs=138.7

Q ss_pred             CCccEE-EEEeCCCCeeEeeCCCC----ceeeecc--------CccCCeEEEEECCCCcEEEEeeCC------CeEEEee
Q 018784           29 PDGFFL-VSASKDSSPMLRNGETG----DWIGTFE--------GHKGAVWSCCLDANALFSASGSAD------FTAKLWD   89 (350)
Q Consensus        29 ~dg~~l-asgs~d~~v~iw~~~~~----~~~~~l~--------gH~~~V~~v~~~~~~~~l~s~s~D------g~v~vWd   89 (350)
                      .++++| ++|-.++.|.+.|..+.    +..++++        |-+ .=..+...|++ +++++..+      |.|.+.|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s-~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYS-RLHTVHCGPDA-IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEE-EEEEEEECSSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCC-cccceeECCCe-EEEEcCCCcCCCCCCeEEEEE
Confidence            466555 66667888999998754    5566663        211 22456778999 66676555      8999999


Q ss_pred             CCCCCeeeeeecc----ccEeEEEEcCCCCeEEEee-------------------CCCeEEEEECCCCCCCCeeecC-CC
Q 018784           90 ALTGDEKHSFEHK----HIVRACAFSEDTHLLLTGG-------------------FEKILRIFDLNRPDAPPREVGN-SS  145 (350)
Q Consensus        90 ~~~~~~~~~~~h~----~~V~~~~~~~~~~~l~sg~-------------------~d~~v~vwd~~~~~~~~~~~~~-~~  145 (350)
                      ..+.+.+..+...    ..-+.+.|+|+++.+++..                   .+.+|.+||+.+.+........ ..
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g  250 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN  250 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence            9999988887522    2234578899999998885                   3789999999864322222111 12


Q ss_pred             CcEEEEEE--eCCCCcEEEEEe-----CCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCc
Q 018784          146 GSIRTVAW--LHSDQTILSSCT-----DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHF  218 (350)
Q Consensus       146 ~~v~~~~~--~~~~~~~~~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~  218 (350)
                      .....+.|  .+.+...++++.     .+++|.+|....++..                           .+.+.|+.+.
T Consensus       251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~---------------------------~~~vIdi~~~  303 (462)
T 2ece_A          251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWN---------------------------AEKVIEIPAE  303 (462)
T ss_dssp             EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEE---------------------------EEEEEEECCE
T ss_pred             CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCcee---------------------------EEEEEeCCCc
Confidence            23455555  555555666666     6778888765432210                           1112222211


Q ss_pred             ceeeeee--------cCCCCceeEecCCCCcEEEEecCCCeEEEEEccc---CeeEEeecCC--------------CcCE
Q 018784          219 GLVKGYN--------MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT---GEQIGCNKGH--------------HGPV  273 (350)
Q Consensus       219 ~~~~~~~--------~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~---~~~~~~~~~h--------------~~~v  273 (350)
                      .....+.        .......+.++++...++++....+.|.+||+..   .+.+..+...              .+..
T Consensus       304 ~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggP  383 (462)
T 2ece_A          304 PLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAP  383 (462)
T ss_dssp             ECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCC
T ss_pred             cccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCC
Confidence            1110000        0122344555665445666666678999999853   2444333211              0135


Q ss_pred             EEEEEcCCCCEEEEec
Q 018784          274 HCVRFSPGGESYASGS  289 (350)
Q Consensus       274 ~~l~~sp~~~~lasgs  289 (350)
                      ..+.++|||++|+.+.
T Consensus       384 r~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          384 QMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCEEECTTSSEEEEEC
T ss_pred             CEEEEcCCCCEEEEEc
Confidence            7899999999887766

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.85  E-value=4.2e-05  Score=75.85  Aligned_cols=272  Identities=11%  Similarity=0.107  Sum_probs=165.7

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccC-------ccCCeEEEEECCCCcEEEEeeCCCeEEEe
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-------HKGAVWSCCLDANALFSASGSADFTAKLW   88 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~g-------H~~~V~~v~~~~~~~~l~s~s~Dg~v~vW   88 (350)
                      ...|.++...+   +|.+.+ |+.++-+.+|+..+++.......       ....|+++....++.+.+... + .|.+|
T Consensus       214 ~~~i~~i~~d~---~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-~-Gl~~~  287 (795)
T 4a2l_A          214 TKQIQAILQQS---PTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-N-DLNIY  287 (795)
T ss_dssp             CCCEEEEEEEE---TTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-S-CEEEE
T ss_pred             CCeeEEEEEcC---CCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-C-hhheE
Confidence            34577776654   666555 45444588899877665432221       235699999998988876543 3 68889


Q ss_pred             eCCCCCeeeeee--------ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee-----ecCCCCcEEEEEEeC
Q 018784           89 DALTGDEKHSFE--------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE-----VGNSSGSIRTVAWLH  155 (350)
Q Consensus        89 d~~~~~~~~~~~--------h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~-----~~~~~~~v~~~~~~~  155 (350)
                      |..++.......        ....|.++...++|. |..|..++.|..|+..........     ..-....|.++...+
T Consensus       288 ~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~  366 (795)
T 4a2l_A          288 HEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK  366 (795)
T ss_dssp             ETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT
T ss_pred             cCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC
Confidence            977664333221        235699999888886 556777777888876432211000     011234688886544


Q ss_pred             CCCcEEEEEeCCCeEEEEECCCCceeEeec---------CCCCeEEEEEecCCc-EEEEEcCCcEEEEECCCcceeeeee
Q 018784          156 SDQTILSSCTDSGGVRLWDARSGKIVQTLE---------TKSPVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGYN  225 (350)
Q Consensus       156 ~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~---------~~~~v~~~~~~~~~~-~l~~~~~~~i~vwd~~~~~~~~~~~  225 (350)
                       ++.+. .|+.++.|..||..+++......         ....|.++...++++ +.++..++.+..||..+.... .+.
T Consensus       367 -~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~-~~~  443 (795)
T 4a2l_A          367 -DKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE-NFN  443 (795)
T ss_dssp             -TSCEE-EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE-EEC
T ss_pred             -CCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE-Eee
Confidence             34444 35677789999988775433221         135688888889998 777777778999998765432 222


Q ss_pred             c-----CCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec------CCCcCEEEEEEcCCCCEEEEecCCCcE
Q 018784          226 M-----PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK------GHHGPVHCVRFSPGGESYASGSEDGTI  294 (350)
Q Consensus       226 ~-----~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~------~h~~~v~~l~~sp~~~~lasgs~Dg~v  294 (350)
                      .     +............+.+.+.. . +-+.+||..+++......      -....|.++...+++.+.+... . -|
T Consensus       444 ~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl  519 (795)
T 4a2l_A          444 QRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GL  519 (795)
T ss_dssp             TTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CE
T ss_pred             cCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ce
Confidence            1     11222222222345555544 4 458889987765433221      1235799999999988766544 4 47


Q ss_pred             EEecCCC
Q 018784          295 RIWQTNP  301 (350)
Q Consensus       295 ~vw~~~~  301 (350)
                      ..|+...
T Consensus       520 ~~~~~~~  526 (795)
T 4a2l_A          520 SVFKQEG  526 (795)
T ss_dssp             EEEEEET
T ss_pred             EEEeCCC
Confidence            7777543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.84  E-value=1e-06  Score=84.08  Aligned_cols=249  Identities=15%  Similarity=0.072  Sum_probs=147.7

Q ss_pred             EEEEeCCCCeeEeeCCCCceeeeccC--ccC--CeEE-EEECCCCcEEEEee-----CCCeEEEeeCCCCCeeeeeeccc
Q 018784           34 LVSASKDSSPMLRNGETGDWIGTFEG--HKG--AVWS-CCLDANALFSASGS-----ADFTAKLWDALTGDEKHSFEHKH  103 (350)
Q Consensus        34 lasgs~d~~v~iw~~~~~~~~~~l~g--H~~--~V~~-v~~~~~~~~l~s~s-----~Dg~v~vWd~~~~~~~~~~~h~~  103 (350)
                      |..++.|+.+.-+|..+|+.+.....  +..  .+.+ -.+ .++.+++.++     .+|.|+.+|..+++.+..+....
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~  202 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG  202 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCC
Confidence            67788899999999999998765432  211  1111 011 1455555433     48999999999999887764321


Q ss_pred             cE---------------------------------------eEEEEcCCCCeEEEeeCC----------------CeEEE
Q 018784          104 IV---------------------------------------RACAFSEDTHLLLTGGFE----------------KILRI  128 (350)
Q Consensus       104 ~V---------------------------------------~~~~~~~~~~~l~sg~~d----------------~~v~v  128 (350)
                      ..                                       ...++.+...+++.+..+                ..|..
T Consensus       203 ~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~A  282 (599)
T 1w6s_A          203 PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG  282 (599)
T ss_dssp             CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred             CccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEE
Confidence            11                                       134555666777766654                37888


Q ss_pred             EECCCCCCCCeeecC-CCC-------cEEEEEEeCCCC---cEEEEEeCCCeEEEEECCCCceeEeecCCC---------
Q 018784          129 FDLNRPDAPPREVGN-SSG-------SIRTVAWLHSDQ---TILSSCTDSGGVRLWDARSGKIVQTLETKS---------  188 (350)
Q Consensus       129 wd~~~~~~~~~~~~~-~~~-------~v~~~~~~~~~~---~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~---------  188 (350)
                      +|..+++........ +..       ...-+.....++   .+++.++.+|.+.+.|.++|+.+.......         
T Consensus       283 ld~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~  362 (599)
T 1w6s_A          283 RDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVD  362 (599)
T ss_dssp             EETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC
T ss_pred             EeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccc
Confidence            898876654333222 211       111121111234   567778899999999999999876654211         


Q ss_pred             -----Ce--------------------------EEEEEecCCcEEEEE--------------------------------
Q 018784          189 -----PV--------------------------TSAEVSRDGRYITTA--------------------------------  205 (350)
Q Consensus       189 -----~v--------------------------~~~~~~~~~~~l~~~--------------------------------  205 (350)
                           ++                          ..++++|+..++...                                
T Consensus       363 ~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p  442 (599)
T 1w6s_A          363 LKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGP  442 (599)
T ss_dssp             TTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECT
T ss_pred             cCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCC
Confidence                 11                          134455554433221                                


Q ss_pred             --------cCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCc-CEEEE
Q 018784          206 --------DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHG-PVHCV  276 (350)
Q Consensus       206 --------~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~-~v~~l  276 (350)
                              ..+.+..||+.+++.+.............+.. .+.++..++.|+.++.||.++|+++-.++...+ ...-+
T Consensus       443 ~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~  521 (599)
T 1w6s_A          443 KGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPM  521 (599)
T ss_dssp             TSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred             cCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEe-cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccE
Confidence                    23578889998888776664432211111111 356677799999999999999998866543221 11224


Q ss_pred             EEcCCCCE
Q 018784          277 RFSPGGES  284 (350)
Q Consensus       277 ~~sp~~~~  284 (350)
                      .+..+|+.
T Consensus       522 ~y~~~G~q  529 (599)
T 1w6s_A          522 TYTHKGTQ  529 (599)
T ss_dssp             EEEETTEE
T ss_pred             EEEeCCEE
Confidence            55566654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.83  E-value=2.3e-05  Score=68.30  Aligned_cols=233  Identities=10%  Similarity=-0.034  Sum_probs=134.7

Q ss_pred             CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCC-C-eEEE
Q 018784           51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE-K-ILRI  128 (350)
Q Consensus        51 ~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d-~-~v~v  128 (350)
                      .+.+..+..+ .....+++++++.++++-...+.|..||... .....+.....+..+++.++++++++.... + .|..
T Consensus        22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~   99 (306)
T 2p4o_A           22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVS   99 (306)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence            3444455432 3456789999999888877889999999764 333344445678899999999866655432 2 4666


Q ss_pred             EECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCce-eEee-------c---CCCCeEEEEEec
Q 018784          129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI-VQTL-------E---TKSPVTSAEVSR  197 (350)
Q Consensus       129 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~-~~~~-------~---~~~~v~~~~~~~  197 (350)
                      +|..++................++.. .++.++++...++.|..+|..+++. +...       .   .-...+.+  ++
T Consensus       100 ~d~~~g~~~~~~~~~~~~~~~g~~~~-~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~  176 (306)
T 2p4o_A          100 LVKSDGTVETLLTLPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR  176 (306)
T ss_dssp             EECTTSCEEEEEECTTCSCEEEEEES-SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE
T ss_pred             EcCCCCeEEEEEeCCCccccCccccc-CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc
Confidence            66654432111111111222333332 3455566655678999999876531 1100       0   11223444  77


Q ss_pred             CCcEEEEE--cCCcEEEEECCC-cce--eeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEE--eecCCC
Q 018784          198 DGRYITTA--DGSSVKFWDANH-FGL--VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG--CNKGHH  270 (350)
Q Consensus       198 ~~~~l~~~--~~~~i~vwd~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~--~~~~h~  270 (350)
                      +++.|..+  ..+.|..||... ...  ...+.....+..+.+.+ +++++++....+.|.++|.. |+...  .+....
T Consensus       177 dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~  254 (306)
T 2p4o_A          177 FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGV  254 (306)
T ss_dssp             ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBT-TCCEEEECBTTCCEEEECTT-CCEEEEECGGGTC
T ss_pred             CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECC-CCCEEEEeCCCCeEEEECCC-CCEEEEeeccccc
Confidence            77655443  356899999864 211  11111112234455554 47888888888899999975 55432  233333


Q ss_pred             cCEEEEEEc---CCCCEEEEecC
Q 018784          271 GPVHCVRFS---PGGESYASGSE  290 (350)
Q Consensus       271 ~~v~~l~~s---p~~~~lasgs~  290 (350)
                      ...++++|.   |++..|+..+.
T Consensus       255 ~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          255 IGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             TTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CCceEEEEecccCCCCEEEEECC
Confidence            568999998   78766554443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.81  E-value=4.1e-06  Score=69.91  Aligned_cols=189  Identities=10%  Similarity=0.076  Sum_probs=124.4

Q ss_pred             eeeeecc--ccEeEEEEcCCCCeEEEeeCC--CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEE
Q 018784           96 KHSFEHK--HIVRACAFSEDTHLLLTGGFE--KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR  171 (350)
Q Consensus        96 ~~~~~h~--~~V~~~~~~~~~~~l~sg~~d--~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~  171 (350)
                      +..+.|.  .....+.|++ +.+..+.+.+  ..|+.+|+.+++...........--..++..  ++++......++.+.
T Consensus        12 ~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~   88 (243)
T 3mbr_X           12 VKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGF   88 (243)
T ss_dssp             EEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEE
T ss_pred             EEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEE
Confidence            4455665  3577999987 5556666664  4899999987655433322222112233333  566777777889999


Q ss_pred             EEECCCCceeEeecCCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCCce----eEecCCCCcEEEEe
Q 018784          172 LWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTES----ASLEPKLGNIFIAG  246 (350)
Q Consensus       172 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~sg  246 (350)
                      ++|..+.+.+.++.....-..+  ++++..|..+ .++.|.++|..+++.++.+....+...    ..+...++++++..
T Consensus        89 v~D~~tl~~~~ti~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanv  166 (243)
T 3mbr_X           89 VYDLATLTPRARFRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANV  166 (243)
T ss_dssp             EEETTTTEEEEEEECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred             EEECCcCcEEEEEeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEE
Confidence            9999999999988865433333  4555544444 356899999999988877765332111    11222357888887


Q ss_pred             cCCCeEEEEEcccCeeEEeecCC-------------CcCEEEEEEcCCCCE-EEEec
Q 018784          247 GEDMWVHVFDFHTGEQIGCNKGH-------------HGPVHCVRFSPGGES-YASGS  289 (350)
Q Consensus       247 ~~d~~i~v~d~~~~~~~~~~~~h-------------~~~v~~l~~sp~~~~-lasgs  289 (350)
                      ..+..|.+.|..+|+.+..+...             ....+.|++.|+++. +++|-
T Consensus       167 w~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          167 WLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            78889999999999987765311             124689999997654 55654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.80  E-value=1.4e-06  Score=73.37  Aligned_cols=188  Identities=16%  Similarity=0.195  Sum_probs=127.2

Q ss_pred             eeeeecc--ccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEE
Q 018784           96 KHSFEHK--HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW  173 (350)
Q Consensus        96 ~~~~~h~--~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iw  173 (350)
                      +..+.|.  .....+.|+. +.+..+.+.++.|+++|+.+++..... .....-...++.  .+++++.....++.+.++
T Consensus        46 v~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~  121 (268)
T 3nok_A           46 IREYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLAS--DGERLYQLTWTEGLLFTW  121 (268)
T ss_dssp             EEEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEE--CSSCEEEEESSSCEEEEE
T ss_pred             EEEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEE--eCCEEEEEEccCCEEEEE
Confidence            3445554  3457888874 566778888899999999887665444 222211223443  356677777788999999


Q ss_pred             ECCCCceeEeecCCCCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceeeeeecCCCCce----eEecCCCCcEEEEecC
Q 018784          174 DARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES----ASLEPKLGNIFIAGGE  248 (350)
Q Consensus       174 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~sg~~  248 (350)
                      |..+.+.+.++.....-..+  +++++.|..++ .+.|.++|..+++.+..+........    ..+...++++++....
T Consensus       122 D~~Tl~~~~ti~~~~eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~  199 (268)
T 3nok_A          122 SGMPPQRERTTRYSGEGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWH  199 (268)
T ss_dssp             ETTTTEEEEEEECSSCCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETT
T ss_pred             ECCcCcEEEEEeCCCceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECC
Confidence            99999999988865432333  35566665554 56899999999988877765432211    1122225788888878


Q ss_pred             CCeEEEEEcccCeeEEeecCC-------------CcCEEEEEEcCCC-CEEEEec
Q 018784          249 DMWVHVFDFHTGEQIGCNKGH-------------HGPVHCVRFSPGG-ESYASGS  289 (350)
Q Consensus       249 d~~i~v~d~~~~~~~~~~~~h-------------~~~v~~l~~sp~~-~~lasgs  289 (350)
                      +..|.+.|..+|+.+..+...             ....+.|++.|++ ++++||-
T Consensus       200 s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          200 SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            899999999999987765321             1356899999975 4566664

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.79  E-value=1.8e-06  Score=72.68  Aligned_cols=183  Identities=13%  Similarity=0.156  Sum_probs=125.5

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCC--CeeEeeCCCCceeeeccCccCC-eEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDS--SPMLRNGETGDWIGTFEGHKGA-VWSCCLDANALFSASGSADFTAKLWDA   90 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~--~v~iw~~~~~~~~~~l~gH~~~-V~~v~~~~~~~~l~s~s~Dg~v~vWd~   90 (350)
                      .-......+.|+    ++.+..+.+.++  .|+.+|+++++.+..+.-.... --.+++.. +++.+....++.+.++|.
T Consensus        40 d~~~ftqGL~~~----~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g-~~ly~ltw~~~~v~v~D~  114 (262)
T 3nol_A           40 DTKAFTEGFFYR----NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWK-DKIVGLTWKNGLGFVWNI  114 (262)
T ss_dssp             CTTCEEEEEEEE----TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEET
T ss_pred             CCCcccceEEEE----CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeC-CEEEEEEeeCCEEEEEEC
Confidence            334456788887    577778887776  8999999999998877543221 12344443 345555678999999999


Q ss_pred             CCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecC----CCCcEEEEEEeCCCCcEEEEEeC
Q 018784           91 LTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN----SSGSIRTVAWLHSDQTILSSCTD  166 (350)
Q Consensus        91 ~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~s~~~  166 (350)
                      .+.+.+.++.....  ...++++++.|+....++.|.++|..+.+........    .-..+..+.|.  ++.+++....
T Consensus       115 ~t~~~~~ti~~~~e--G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~  190 (262)
T 3nol_A          115 RNLRQVRSFNYDGE--GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGEIFANVWQ  190 (262)
T ss_dssp             TTCCEEEEEECSSC--CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTEEEEEETT
T ss_pred             ccCcEEEEEECCCC--ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCEEEEEEcc
Confidence            99998888876542  2344467777777766888999998765433222111    11234456665  5677777777


Q ss_pred             CCeEEEEECCCCceeEeecCC-------------CCeEEEEEecCCcE-EEEE
Q 018784          167 SGGVRLWDARSGKIVQTLETK-------------SPVTSAEVSRDGRY-ITTA  205 (350)
Q Consensus       167 dg~i~iwd~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~-l~~~  205 (350)
                      ++.|.+.|.++++.+..+...             .-.+.++++|+++. ++++
T Consensus       191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            889999999999998887642             23578999997654 4554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.79  E-value=2.1e-06  Score=81.84  Aligned_cols=268  Identities=13%  Similarity=0.061  Sum_probs=154.1

Q ss_pred             EEEEEeC-CCCeeEeeC-CCCceeeeccCccC----------Ce-EEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee
Q 018784           33 FLVSASK-DSSPMLRNG-ETGDWIGTFEGHKG----------AV-WSCCLDANALFSASGSADFTAKLWDALTGDEKHSF   99 (350)
Q Consensus        33 ~lasgs~-d~~v~iw~~-~~~~~~~~l~gH~~----------~V-~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~   99 (350)
                      .|..++. ++.+.-.|. .+|+.+..++-...          .+ ..+++  .+..++.++.|+.+..+|..+++.+...
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  141 (571)
T 2ad6_A           64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWEV  141 (571)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEEe
Confidence            4455566 889999999 89998876543211          00 11222  2445566778999999999999988776


Q ss_pred             eccc-----cEeE-EEEcCCCCeEEEeeC------CCeEEEEECCCCCCCCeeecCC-----------------------
Q 018784          100 EHKH-----IVRA-CAFSEDTHLLLTGGF------EKILRIFDLNRPDAPPREVGNS-----------------------  144 (350)
Q Consensus       100 ~h~~-----~V~~-~~~~~~~~~l~sg~~------d~~v~vwd~~~~~~~~~~~~~~-----------------------  144 (350)
                      ....     .+.+ ... .++ .++.++.      ++.|..+|..+++...+.....                       
T Consensus       142 ~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~  219 (571)
T 2ad6_A          142 EVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGL  219 (571)
T ss_dssp             ECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSH
T ss_pred             cCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccccc
Confidence            4322     1211 011 134 4555544      7899999998766433221110                       


Q ss_pred             -------------CCcE-EEEEEeCCCCcEEEEEeC-----------C----CeEEEEECCCCceeEeecCC--------
Q 018784          145 -------------SGSI-RTVAWLHSDQTILSSCTD-----------S----GGVRLWDARSGKIVQTLETK--------  187 (350)
Q Consensus       145 -------------~~~v-~~~~~~~~~~~~~~s~~~-----------d----g~i~iwd~~~~~~~~~~~~~--------  187 (350)
                                   .+.+ ..+++.+..+.+++..++           |    +.|..+|.++|+.+...+..        
T Consensus       220 g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~  299 (571)
T 2ad6_A          220 GTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFA  299 (571)
T ss_dssp             HHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCC
T ss_pred             ccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccc
Confidence                         0000 123344444544443321           2    36999999999988877532        


Q ss_pred             ---CCeEEEEEecCCc---EEE-EEcCCcEEEEECCCcceeeeeecCCCC------------------------------
Q 018784          188 ---SPVTSAEVSRDGR---YIT-TADGSSVKFWDANHFGLVKGYNMPCNT------------------------------  230 (350)
Q Consensus       188 ---~~v~~~~~~~~~~---~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~------------------------------  230 (350)
                         .++ -+....+|+   +++ ...++.+.++|..+++.+..+......                              
T Consensus       300 ~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~  378 (571)
T 2ad6_A          300 GVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNI  378 (571)
T ss_dssp             CCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEE
T ss_pred             cCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEE
Confidence               122 122234674   343 445789999999988877655432200                              


Q ss_pred             ----------ceeEecCCCCcEEEEe------------------------------------cCCCeEEEEEcccCeeEE
Q 018784          231 ----------ESASLEPKLGNIFIAG------------------------------------GEDMWVHVFDFHTGEQIG  264 (350)
Q Consensus       231 ----------~~~~~~~~~~~~l~sg------------------------------------~~d~~i~v~d~~~~~~~~  264 (350)
                                ....+.+..+.+++..                                    ..++.|..||+.+|+.+-
T Consensus       379 ~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W  458 (571)
T 2ad6_A          379 CPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKW  458 (571)
T ss_dssp             SSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEE
T ss_pred             CCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEE
Confidence                      0122333333333321                                    135789999999998765


Q ss_pred             eecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCccc
Q 018784          265 CNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEE  306 (350)
Q Consensus       265 ~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~  306 (350)
                      ..... ..+....+...+..++.++.|+.|+.||..+.+..-
T Consensus       459 ~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw  499 (571)
T 2ad6_A          459 TKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELW  499 (571)
T ss_dssp             EEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             EecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEE
Confidence            44321 122222223345567779999999999988776653

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.78  E-value=1.1e-06  Score=82.34  Aligned_cols=189  Identities=12%  Similarity=0.113  Sum_probs=125.7

Q ss_pred             CCCCeEEEee-CCCeEEEEECCCCCCCCeeecCCCCcEEEEEEe--CCCCcEEEEE-----------------eCCCeEE
Q 018784          112 EDTHLLLTGG-FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL--HSDQTILSSC-----------------TDSGGVR  171 (350)
Q Consensus       112 ~~~~~l~sg~-~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~s~-----------------~~dg~i~  171 (350)
                      +||++++... .+..|.+.|+...+............+..+++.  |..+.+++++                 ..++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            3778776654 466799999986543221122222346677764  4445454443                 3446899


Q ss_pred             EEECCCCceeEeecCCCCeEEEEEecCCcEEEEEc-C--------------------------------------CcEEE
Q 018784          172 LWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-G--------------------------------------SSVKF  212 (350)
Q Consensus       172 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~--------------------------------------~~i~v  212 (350)
                      ++|..+.+...++........+.++|+|+++.+++ +                                      +.|.+
T Consensus       179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V  258 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  258 (595)
T ss_dssp             EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence            99999999888887543456678899998876543 1                                      13777


Q ss_pred             EECCC--cce-eeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCe------------eEEeecCCCcCEEEEE
Q 018784          213 WDANH--FGL-VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE------------QIGCNKGHHGPVHCVR  277 (350)
Q Consensus       213 wd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~------------~~~~~~~h~~~v~~l~  277 (350)
                      .|.++  ... +..+..+..+..+.+.|+...+++++..+.+|.++|+.+.+            .+.... -......++
T Consensus       259 ID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~a  337 (595)
T 1fwx_A          259 VDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTA  337 (595)
T ss_dssp             EECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEE
T ss_pred             EeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEE
Confidence            78776  333 44555555566777777644566677778999999998653            222222 233578999


Q ss_pred             EcCCCCEEEEecCCCcEEEecCCC
Q 018784          278 FSPGGESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       278 ~sp~~~~lasgs~Dg~v~vw~~~~  301 (350)
                      |+|+|..+.+.-.|+.|.+||+..
T Consensus       338 F~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          338 FDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             ECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ECCCCeEEEEEecCCcEEEEEhhH
Confidence            999995566788899999999865

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.78  E-value=9.2e-06  Score=77.50  Aligned_cols=254  Identities=16%  Similarity=0.110  Sum_probs=149.2

Q ss_pred             ccEEEEEeCCCCeeEeeCCCCceeeeccCcc--C--CeE---EEEEC-CCCc-EEEEee------CCCeEEEeeCCCCCe
Q 018784           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHK--G--AVW---SCCLD-ANAL-FSASGS------ADFTAKLWDALTGDE   95 (350)
Q Consensus        31 g~~lasgs~d~~v~iw~~~~~~~~~~l~gH~--~--~V~---~v~~~-~~~~-~l~s~s------~Dg~v~vWd~~~~~~   95 (350)
                      +..|..++.|+.+.-.|.++|+.+.......  .  .+.   .+.-. .+++ .++.++      .++.|..+|..+++.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            3466778889999999999999876654321  0  111   11111 1232 444544      389999999999998


Q ss_pred             eeeeecccc-E-----------------------------------------eEEEEcCCCCeEEEeeC-----------
Q 018784           96 KHSFEHKHI-V-----------------------------------------RACAFSEDTHLLLTGGF-----------  122 (350)
Q Consensus        96 ~~~~~h~~~-V-----------------------------------------~~~~~~~~~~~l~sg~~-----------  122 (350)
                      +........ +                                         ...++.|...+++.+..           
T Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~  276 (582)
T 1flg_A          197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART  276 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred             EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence            776532110 0                                         12455566667765542           


Q ss_pred             ---------C----CeEEEEECCCCCCCCeeec-CCCC-------cEEEEEEeCCCC---cEEEEEeCCCeEEEEECCCC
Q 018784          123 ---------E----KILRIFDLNRPDAPPREVG-NSSG-------SIRTVAWLHSDQ---TILSSCTDSGGVRLWDARSG  178 (350)
Q Consensus       123 ---------d----~~v~vwd~~~~~~~~~~~~-~~~~-------~v~~~~~~~~~~---~~~~s~~~dg~i~iwd~~~~  178 (350)
                               |    +.|..+|+.+++....... ++..       ...-+.....++   .+++.++.+|.++++|.++|
T Consensus       277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG  356 (582)
T 1flg_A          277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG  356 (582)
T ss_dssp             CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred             cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence                     2    5788999887765544322 2211       111111110233   46778889999999999999


Q ss_pred             ceeEeecCCCC----------------------------------------------eEEEEEecCCcEE-EEE------
Q 018784          179 KIVQTLETKSP----------------------------------------------VTSAEVSRDGRYI-TTA------  205 (350)
Q Consensus       179 ~~~~~~~~~~~----------------------------------------------v~~~~~~~~~~~l-~~~------  205 (350)
                      +.+........                                              ...++++|+..++ +..      
T Consensus       357 ~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~  436 (582)
T 1flg_A          357 KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKED  436 (582)
T ss_dssp             CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEE
T ss_pred             CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhccee
Confidence            98766543210                                              0123445543322 211      


Q ss_pred             ---------------------------cCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcc
Q 018784          206 ---------------------------DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (350)
Q Consensus       206 ---------------------------~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~  258 (350)
                                                 ..+.|..||+.+++.+..+..........+.. .+.+++.|+.|+.++.||.+
T Consensus       437 ~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t-agglvf~g~~dg~l~A~D~~  515 (582)
T 1flg_A          437 YWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLAT-AGNLVFTGTGDGYFKAFDAK  515 (582)
T ss_dssp             EEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEE-TTTEEEEECTTSEEEEEETT
T ss_pred             eecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEe-CCCEEEEECCCCcEEEEECC
Confidence                                       14678999999988776655432222111111 25677779999999999999


Q ss_pred             cCeeEEeecCCCcC-EEEEEEcCCCCEE
Q 018784          259 TGEQIGCNKGHHGP-VHCVRFSPGGESY  285 (350)
Q Consensus       259 ~~~~~~~~~~h~~~-v~~l~~sp~~~~l  285 (350)
                      +|+.+-.+....+. ..-+.|..+|+.+
T Consensus       516 tG~~lW~~~~~~g~~a~P~~y~~~G~qY  543 (582)
T 1flg_A          516 SGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             TCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CCCEEEEecCCCCcccCceEEEECCEEE
Confidence            99998766543221 1225566677643

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.78  E-value=4e-06  Score=73.70  Aligned_cols=235  Identities=9%  Similarity=0.038  Sum_probs=140.4

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeecc------------C--------ccCCeEEEEECC-
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE------------G--------HKGAVWSCCLDA-   71 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~------------g--------H~~~V~~v~~~~-   71 (350)
                      .|......++++++   +|.++.++..++.|..|+..+++... +.            +        .......+++++ 
T Consensus        15 ~g~~~~p~~i~~d~---~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~   90 (322)
T 2fp8_A           15 EAPSYAPNSFTFDS---TNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ   90 (322)
T ss_dssp             ECSSSCCCCEECCT---TCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT
T ss_pred             CCccCCceEEEEcC---CCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCC
Confidence            34334455676665   88877788888999999887655432 21            0        113567889987 


Q ss_pred             CCcEEEEeeCCCeEEEeeCCCCCeeeeee-----ccccEeEEEEcC-CCCeEEEeeC-----------------CCeEEE
Q 018784           72 NALFSASGSADFTAKLWDALTGDEKHSFE-----HKHIVRACAFSE-DTHLLLTGGF-----------------EKILRI  128 (350)
Q Consensus        72 ~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-----h~~~V~~~~~~~-~~~~l~sg~~-----------------d~~v~v  128 (350)
                      ++.++++. ..+.|..+|..++.......     .-..+..+++.+ +|.+.++-..                 ++.|..
T Consensus        91 ~g~l~v~d-~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  169 (322)
T 2fp8_A           91 NNQLYIVD-CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK  169 (322)
T ss_dssp             TTEEEEEE-TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred             CCcEEEEE-CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence            77766653 34458888876543221111     113468899999 8977665432                 366888


Q ss_pred             EECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC---ceeEeecCCCCeEEEEEecCCcEEEEE
Q 018784          129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG---KIVQTLETKSPVTSAEVSRDGRYITTA  205 (350)
Q Consensus       129 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~  205 (350)
                      ||.......  ...........+++.+++..++++-...+.|..+++...   .......... ...+++.++|++.++.
T Consensus       170 ~d~~~~~~~--~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~  246 (322)
T 2fp8_A          170 YDPSTKETT--LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSS  246 (322)
T ss_dssp             EETTTTEEE--EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEE
T ss_pred             EeCCCCEEE--EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEe
Confidence            887543211  111111223457777655557777666789999998742   2111111223 6778999999877665


Q ss_pred             cC-----------CcEEEEECCCcceeeeeecCC----C-CceeEecCCCCcEEEEecCCCeEEEEEcc
Q 018784          206 DG-----------SSVKFWDANHFGLVKGYNMPC----N-TESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (350)
Q Consensus       206 ~~-----------~~i~vwd~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~  258 (350)
                      ..           +.|..+|.. ++.+..+..+.    . ...+.+  ..++++++....+.|.++++.
T Consensus       247 ~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~--~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          247 SEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE--HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             EEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE--ETTEEEEECSSCSEEEEEEC-
T ss_pred             cCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE--eCCEEEEeecCCCceEEEecc
Confidence            33           457888864 45555555442    1 122222  346777777778888888875

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.76  E-value=5e-06  Score=73.11  Aligned_cols=230  Identities=12%  Similarity=0.019  Sum_probs=136.9

Q ss_pred             EEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee--------------------ccccEeEEEEcC-CCCeEEEeeCC
Q 018784           65 WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--------------------HKHIVRACAFSE-DTHLLLTGGFE  123 (350)
Q Consensus        65 ~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~--------------------h~~~V~~~~~~~-~~~~l~sg~~d  123 (350)
                      ..+++++++.++.++..++.|..|+..++.......                    ....+..+++.+ ++. |+.+...
T Consensus        22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~~  100 (322)
T 2fp8_A           22 NSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDCY  100 (322)
T ss_dssp             CCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEETT
T ss_pred             eEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEECC
Confidence            456788888866777888999999987654322110                    013478899998 555 5555445


Q ss_pred             CeEEEEECCCCCCCCeeec----CCCCcEEEEEEeCCCCcEEEEEeC-----------------CCeEEEEECCCCceeE
Q 018784          124 KILRIFDLNRPDAPPREVG----NSSGSIRTVAWLHSDQTILSSCTD-----------------SGGVRLWDARSGKIVQ  182 (350)
Q Consensus       124 ~~v~vwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~s~~~-----------------dg~i~iwd~~~~~~~~  182 (350)
                      +.+..+|...+... ....    ........+++.+.++.++++-..                 ++.|..+|..+++...
T Consensus       101 ~~i~~~d~~~g~~~-~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  179 (322)
T 2fp8_A          101 YHLSVVGSEGGHAT-QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL  179 (322)
T ss_dssp             TEEEEECTTCEECE-EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE
T ss_pred             CCEEEEeCCCCEEE-EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE
Confidence            55888886533211 1110    111245677776514556655432                 3678889987776433


Q ss_pred             eecCCCCeEEEEEecCCcEEEEE--cCCcEEEEECCCcc--eeeee-ecCCCCceeEecCCCCcEEEEecC---------
Q 018784          183 TLETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANHFG--LVKGY-NMPCNTESASLEPKLGNIFIAGGE---------  248 (350)
Q Consensus       183 ~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~vwd~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~---------  248 (350)
                      ....-...+.+++++++++|..+  ..+.|..|++....  ....+ ..+. +..+.+.+ +++++++...         
T Consensus       180 ~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~-~G~l~va~~~~~~~~~~~~  257 (322)
T 2fp8_A          180 LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNA-DGHFWVSSSEELDGNMHGR  257 (322)
T ss_dssp             EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECT-TSCEEEEEEEETTSSTTSC
T ss_pred             eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECC-CCCEEEEecCcccccccCC
Confidence            32222334568999999855433  34689999986421  11111 1222 33444444 4677776654         


Q ss_pred             -CCeEEEEEcccCeeEEeecCC----CcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          249 -DMWVHVFDFHTGEQIGCNKGH----HGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       249 -d~~i~v~d~~~~~~~~~~~~h----~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                       .+.|..+|. .++.+..+...    ...+.++++ .++.++++....+.|..+++.
T Consensus       258 ~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          258 VDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             EEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred             CccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence             466888886 46666555432    234667777 467777777788899999874

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.75  E-value=7.4e-07  Score=86.52  Aligned_cols=258  Identities=12%  Similarity=0.062  Sum_probs=141.2

Q ss_pred             CccEEEEEeCCC-----------CeeEeeCCCCceee--ecc-CccCCeEEEEECCCCcEEEEee-CCCeEEEeeCCCCC
Q 018784           30 DGFFLVSASKDS-----------SPMLRNGETGDWIG--TFE-GHKGAVWSCCLDANALFSASGS-ADFTAKLWDALTGD   94 (350)
Q Consensus        30 dg~~lasgs~d~-----------~v~iw~~~~~~~~~--~l~-gH~~~V~~v~~~~~~~~l~s~s-~Dg~v~vWd~~~~~   94 (350)
                      +|++++.|+.+.           .+.+||..++++..  .+. .+.....++++..++++++.|| .+..+.+||..+.+
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~  276 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS  276 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCc
Confidence            788889887653           47789998887643  222 2323333467778899988888 45689999987764


Q ss_pred             eeee--eeccccEeEEEEcCCCCeEEEee-CC-----CeEEEEECCCCCCCCe-----eecCCCCcEEEEEEeCCCCcEE
Q 018784           95 EKHS--FEHKHIVRACAFSEDTHLLLTGG-FE-----KILRIFDLNRPDAPPR-----EVGNSSGSIRTVAWLHSDQTIL  161 (350)
Q Consensus        95 ~~~~--~~h~~~V~~~~~~~~~~~l~sg~-~d-----~~v~vwd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~  161 (350)
                      -...  +.....-.+++..+++++++.|+ .+     ..+.+||..+......     ........  ...+ ..++.++
T Consensus       277 W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~--~~~~-~~~~~iy  353 (656)
T 1k3i_A          277 WIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK--QGLY-RSDNHAW  353 (656)
T ss_dssp             EEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT--TGGG-TTTCSCC
T ss_pred             eeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc--ccee-ecCCceE
Confidence            2221  12222223556667899999988 44     5689999865321110     00000000  0000 1123333


Q ss_pred             EEEeCC---------CeEEEEECCCCceeEeecCC----------CCeEEEEEe-cCCcEEEEEc-C--------C---c
Q 018784          162 SSCTDS---------GGVRLWDARSGKIVQTLETK----------SPVTSAEVS-RDGRYITTAD-G--------S---S  209 (350)
Q Consensus       162 ~s~~~d---------g~i~iwd~~~~~~~~~~~~~----------~~v~~~~~~-~~~~~l~~~~-~--------~---~  209 (350)
                      +.++.+         ..+..||..+..-.......          ..-.++.+. .++++++.+. +        .   .
T Consensus       354 v~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~  433 (656)
T 1k3i_A          354 LFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHI  433 (656)
T ss_dssp             EEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEE
T ss_pred             EEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceE
Confidence            333322         46788998776533222111          112233333 3677766543 1        1   5


Q ss_pred             EEEEECCCcceeeee--ecCCCCce-eEecCCCCcEEEEecCC-----------CeEEEEEcccCeeE--EeecCCCcCE
Q 018784          210 VKFWDANHFGLVKGY--NMPCNTES-ASLEPKLGNIFIAGGED-----------MWVHVFDFHTGEQI--GCNKGHHGPV  273 (350)
Q Consensus       210 i~vwd~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~l~sg~~d-----------~~i~v~d~~~~~~~--~~~~~h~~~v  273 (350)
                      |.+||..+.......  .++..... ......++++++.|+.+           ..+.+||..+.+-.  ..+......-
T Consensus       434 v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~h  513 (656)
T 1k3i_A          434 ITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYH  513 (656)
T ss_dssp             EECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTT
T ss_pred             EEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccc
Confidence            778887765443322  33332221 21222368999999865           46899998775422  1111111112


Q ss_pred             EEEEEcCCCCEEEEecC
Q 018784          274 HCVRFSPGGESYASGSE  290 (350)
Q Consensus       274 ~~l~~sp~~~~lasgs~  290 (350)
                      .+..+.|++++++.|+.
T Consensus       514 s~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          514 SISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EEEEECTTSCEEEEECC
T ss_pred             cHhhcCCCcEEEecCCC
Confidence            34556799999999985

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.74  E-value=2.7e-06  Score=71.70  Aligned_cols=179  Identities=11%  Similarity=0.044  Sum_probs=125.1

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCe--EEEEECCCCcEEEEeeCCCeEEEeeCCCC
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAV--WSCCLDANALFSASGSADFTAKLWDALTG   93 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V--~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~   93 (350)
                      ......+.|+    ++.+..+.+.++.|+.+|+++++.+..+ - ....  -.+++..+ ++.+....++.+.++|..+.
T Consensus        54 ~~ftqGL~~~----~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl  126 (268)
T 3nok_A           54 NAFTQGLVFH----QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPP  126 (268)
T ss_dssp             TCCEEEEEEE----TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECSS-CEEEEESSSCEEEEEETTTT
T ss_pred             ccccceEEEE----CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeCC-EEEEEEccCCEEEEEECCcC
Confidence            3455788887    5778888899999999999999998776 2 2222  33566544 45555678999999999999


Q ss_pred             CeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeec-CC---CCcEEEEEEeCCCCcEEEEEeCCCe
Q 018784           94 DEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-NS---SGSIRTVAWLHSDQTILSSCTDSGG  169 (350)
Q Consensus        94 ~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~-~~---~~~v~~~~~~~~~~~~~~s~~~dg~  169 (350)
                      +.+.++.....-..+  .++++.|+.+..++.|.++|..+.+....... ..   -..+..+.|.  ++.+++....+..
T Consensus       127 ~~~~ti~~~~eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~~  202 (268)
T 3nok_A          127 QRERTTRYSGEGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIYANIWHSSD  202 (268)
T ss_dssp             EEEEEEECSSCCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTCSE
T ss_pred             cEEEEEeCCCceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEEEEECCCCe
Confidence            988887655433344  46678887777789999999876543322111 11   1234566766  5567777777889


Q ss_pred             EEEEECCCCceeEeecCC--------------CCeEEEEEecCC-cEEEEE
Q 018784          170 VRLWDARSGKIVQTLETK--------------SPVTSAEVSRDG-RYITTA  205 (350)
Q Consensus       170 i~iwd~~~~~~~~~~~~~--------------~~v~~~~~~~~~-~~l~~~  205 (350)
                      |.+.|.++++.+..+...              .-.+.++++|++ ++++++
T Consensus       203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            999999999988877542              245778888865 455555

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.67  E-value=1.5e-05  Score=66.42  Aligned_cols=181  Identities=14%  Similarity=0.105  Sum_probs=122.8

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCC--CeeEeeCCCCceeeeccCccCC-eEEEEECCCCcEEEEeeCCCeEEEeeCCC
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDS--SPMLRNGETGDWIGTFEGHKGA-VWSCCLDANALFSASGSADFTAKLWDALT   92 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~--~v~iw~~~~~~~~~~l~gH~~~-V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~   92 (350)
                      ...+..+.|+    ++.+..+.+.++  .|+.+|+++++.+..+.-.... --.+++.. +++.+....++.+.++|..+
T Consensus        20 ~~ftqGL~~~----~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~t   94 (243)
T 3mbr_X           20 TAFTEGLFYL----RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGFVYDLAT   94 (243)
T ss_dssp             TCCEEEEEEE----TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTT
T ss_pred             ccccccEEEE----CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEEEEECCc
Confidence            4567799998    366777777754  7999999999998876532221 12344433 45556677899999999999


Q ss_pred             CCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeec-CC---CCcEEEEEEeCCCCcEEEEEeCCC
Q 018784           93 GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-NS---SGSIRTVAWLHSDQTILSSCTDSG  168 (350)
Q Consensus        93 ~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~-~~---~~~v~~~~~~~~~~~~~~s~~~dg  168 (350)
                      .+.+.++.....-..+  .++++.|+++..++.|.++|..+.+....... ..   -..+..+.|.  ++.+++....+.
T Consensus        95 l~~~~ti~~~~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanvw~s~  170 (243)
T 3mbr_X           95 LTPRARFRYPGEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--NGELLANVWLTS  170 (243)
T ss_dssp             TEEEEEEECSSCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTTT
T ss_pred             CcEEEEEeCCCCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--CCEEEEEECCCC
Confidence            9988888765543444  45677777776788999999876543322211 11   1234556665  566777776778


Q ss_pred             eEEEEECCCCceeEeecCC--------------CCeEEEEEecCCc-EEEEE
Q 018784          169 GVRLWDARSGKIVQTLETK--------------SPVTSAEVSRDGR-YITTA  205 (350)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~~--------------~~v~~~~~~~~~~-~l~~~  205 (350)
                      .|.+.|+++++.+..+...              .-.+.++++|+++ +++++
T Consensus       171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            9999999999988877532              2357788888654 44554

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.63  E-value=3.4e-06  Score=76.55  Aligned_cols=177  Identities=13%  Similarity=0.142  Sum_probs=119.7

Q ss_pred             CCccEEEEEeCC------CCeeEeeCCCCceeeeccC--ccCC-eEEEEECCCCcEEEEee-------------------
Q 018784           29 PDGFFLVSASKD------SSPMLRNGETGDWIGTFEG--HKGA-VWSCCLDANALFSASGS-------------------   80 (350)
Q Consensus        29 ~dg~~lasgs~d------~~v~iw~~~~~~~~~~l~g--H~~~-V~~v~~~~~~~~l~s~s-------------------   80 (350)
                      |+| +++++..+      +.+.+.|.++++.+.+++-  +... -+.+.|+|+++.++|..                   
T Consensus       147 pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~  225 (462)
T 2ece_A          147 PDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDR  225 (462)
T ss_dssp             SSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHH
T ss_pred             CCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhc
Confidence            588 66666655      6799999999999998863  2211 23467799999988874                   


Q ss_pred             CCCeEEEeeCCCCCeeeeeecc---ccEeEEEE--cCCCCeEEEee------CCCeEEEEECCCCCCC--------Ce--
Q 018784           81 ADFTAKLWDALTGDEKHSFEHK---HIVRACAF--SEDTHLLLTGG------FEKILRIFDLNRPDAP--------PR--  139 (350)
Q Consensus        81 ~Dg~v~vWd~~~~~~~~~~~h~---~~V~~~~~--~~~~~~l~sg~------~d~~v~vwd~~~~~~~--------~~--  139 (350)
                      .+.+|.+||+.+++...++.-.   ...+.+.|  +|+++++++++      .+++|.+|..+.+...        ..  
T Consensus       226 ~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v  305 (462)
T 2ece_A          226 YGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPL  305 (462)
T ss_dssp             SCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEEC
T ss_pred             cCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccc
Confidence            3799999999987766666542   34566766  99999888776      4567766543321100        00  


Q ss_pred             --ee-------cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCC---CceeEeecCCC---------------CeEE
Q 018784          140 --EV-------GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS---GKIVQTLETKS---------------PVTS  192 (350)
Q Consensus       140 --~~-------~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~---~~~~~~~~~~~---------------~v~~  192 (350)
                        .+       .........+..+++++.++++.-..+.|.++|+..   .+.+..+....               .-..
T Consensus       306 ~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~  385 (462)
T 2ece_A          306 EGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQM  385 (462)
T ss_dssp             CSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCC
T ss_pred             cccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCE
Confidence              00       000234667888888888888888889999999853   34555554331               2467


Q ss_pred             EEEecCCcEEEEEc
Q 018784          193 AEVSRDGRYITTAD  206 (350)
Q Consensus       193 ~~~~~~~~~l~~~~  206 (350)
                      +.++|||++|.+++
T Consensus       386 ~~lSpDGk~LyVaN  399 (462)
T 2ece_A          386 LEISRDGRRVYVTN  399 (462)
T ss_dssp             EEECTTSSEEEEEC
T ss_pred             EEEcCCCCEEEEEc
Confidence            88999999887664

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.59  E-value=0.00052  Score=67.82  Aligned_cols=275  Identities=11%  Similarity=0.018  Sum_probs=161.1

Q ss_pred             CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeecc--------------CccCCeEEEEECCCCcEEEEeeCC
Q 018784           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE--------------GHKGAVWSCCLDANALFSASGSAD   82 (350)
Q Consensus        17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~--------------gH~~~V~~v~~~~~~~~l~s~s~D   82 (350)
                      ..|.++...+   +|.+.+ |+..+-+.+++..+++......              -....|.++..+.++.+.+ |..+
T Consensus       258 ~~i~~i~~d~---~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWi-gt~~  332 (781)
T 3v9f_A          258 SYIFSIKQLK---DNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWI-GTWG  332 (781)
T ss_dssp             CCEEEEEECT---TSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEE-EEBS
T ss_pred             ceEEEEEECC---CCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEE-EecC
Confidence            4577776654   666544 5664567888877655432111              1346799999999888765 4456


Q ss_pred             CeEEEeeCCCCCeeeeee----------ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee--ecCCCCcEEE
Q 018784           83 FTAKLWDALTGDEKHSFE----------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE--VGNSSGSIRT  150 (350)
Q Consensus        83 g~v~vWd~~~~~~~~~~~----------h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~--~~~~~~~v~~  150 (350)
                      +-|..++..+........          ....|.++...+++. |..|..++.+..|+..+.......  .......|.+
T Consensus       333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~  411 (781)
T 3v9f_A          333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLC  411 (781)
T ss_dssp             SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEE
T ss_pred             CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEE
Confidence            778888876554322210          234689998888776 455666667888887532111000  0123456778


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec---CCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecC
Q 018784          151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE---TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP  227 (350)
Q Consensus       151 ~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~  227 (350)
                      +...+ ++.+.+ |+.++.|..+|.++++......   ....|.++...+++.+.++.. +.+..||..+..........
T Consensus       412 i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~  488 (781)
T 3v9f_A          412 SLKDS-EGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTS  488 (781)
T ss_dssp             EEECT-TSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTT
T ss_pred             EEECC-CCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCc
Confidence            76543 444444 4555779999988776433221   235688888888898887766 57888998765433222111


Q ss_pred             -----CCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec--C-CCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          228 -----CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK--G-HHGPVHCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       228 -----~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~--~-h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                           ............+.+. .|+.++-+..||..+++......  + ....|.++...++|.+.++.. +|.|..||.
T Consensus       489 ~~~~~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~  566 (781)
T 3v9f_A          489 NSQLLENFVRSIAQDSEGRFW-IGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSA  566 (781)
T ss_dssp             TSSCSCSCEEEEEECTTCCEE-EEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCT
T ss_pred             ccccccceeEEEEEcCCCCEE-EEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECC
Confidence                 1112222222334544 45554447778876654332211  1 235689999988888666544 776688876


Q ss_pred             CCC
Q 018784          300 NPP  302 (350)
Q Consensus       300 ~~~  302 (350)
                      ...
T Consensus       567 ~~~  569 (781)
T 3v9f_A          567 RNF  569 (781)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.59  E-value=2.7e-05  Score=74.34  Aligned_cols=190  Identities=13%  Similarity=0.089  Sum_probs=111.3

Q ss_pred             EEEEEeC-CCCeeEeeC-CCCceeeeccCccCC-----------eEEEEECC-CCc---EEEEeeCCCeEEEeeCCCCCe
Q 018784           33 FLVSASK-DSSPMLRNG-ETGDWIGTFEGHKGA-----------VWSCCLDA-NAL---FSASGSADFTAKLWDALTGDE   95 (350)
Q Consensus        33 ~lasgs~-d~~v~iw~~-~~~~~~~~l~gH~~~-----------V~~v~~~~-~~~---~l~s~s~Dg~v~vWd~~~~~~   95 (350)
                      .|..++. ++.+.-+|. .+|+.+..++-....           ...+++.| ++.   .++.++.|+.+..+|..+++.
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~  143 (599)
T 1w6s_A           64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET  143 (599)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred             EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence            4555666 888999999 899988766432210           12334432 222   256678899999999999998


Q ss_pred             eeeeeccc-----cEeE-EEEcCCCCeEEEee------CCCeEEEEECCCCCCCCeeecCCC------------------
Q 018784           96 KHSFEHKH-----IVRA-CAFSEDTHLLLTGG------FEKILRIFDLNRPDAPPREVGNSS------------------  145 (350)
Q Consensus        96 ~~~~~h~~-----~V~~-~~~~~~~~~l~sg~------~d~~v~vwd~~~~~~~~~~~~~~~------------------  145 (350)
                      +.......     .+.+ -.. .++ .++.++      .++.|..+|..+++...+......                  
T Consensus       144 ~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g  221 (599)
T 1w6s_A          144 VWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG  221 (599)
T ss_dssp             EEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             EEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence            87654221     1211 011 134 455554      378999999987664332211100                  


Q ss_pred             ------------------CcE-EEEEEeCCCCcEEEEEeC---------------CCeEEEEECCCCceeEeecCCC---
Q 018784          146 ------------------GSI-RTVAWLHSDQTILSSCTD---------------SGGVRLWDARSGKIVQTLETKS---  188 (350)
Q Consensus       146 ------------------~~v-~~~~~~~~~~~~~~s~~~---------------dg~i~iwd~~~~~~~~~~~~~~---  188 (350)
                                        +.+ ..+++.+..+.+++..++               .+.|..+|.++|+.+...+...   
T Consensus       222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~  301 (599)
T 1w6s_A          222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE  301 (599)
T ss_dssp             CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred             ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence                              001 123333444444443332               1489999999999988776421   


Q ss_pred             --------CeEEEEEe-cCC---cEEE-EEcCCcEEEEECCCcceeeeee
Q 018784          189 --------PVTSAEVS-RDG---RYIT-TADGSSVKFWDANHFGLVKGYN  225 (350)
Q Consensus       189 --------~v~~~~~~-~~~---~~l~-~~~~~~i~vwd~~~~~~~~~~~  225 (350)
                              ++. +... .+|   ..++ ...++.+.++|.++++.+....
T Consensus       302 wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          302 WDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             SCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence                    121 2222 467   4444 4467899999999888776554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.58  E-value=2e-05  Score=75.09  Aligned_cols=273  Identities=15%  Similarity=0.142  Sum_probs=153.0

Q ss_pred             CccEEEEEeCCCCeeEeeCCCCceeeeccCccCCe---------EEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee
Q 018784           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAV---------WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE  100 (350)
Q Consensus        30 dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V---------~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~  100 (350)
                      ++.+.+ ++.++.+.-+|..+|+.+..+.......         ..+++  .+..++.++.|+.|..+|..+++.+....
T Consensus        68 ~g~vyv-~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~  144 (582)
T 1flg_A           68 DGVIYV-TASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKK  144 (582)
T ss_dssp             TTEEEE-EETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred             CCEEEE-EcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence            555444 4443348889999999887765432210         11222  23455667789999999999999887654


Q ss_pred             ccc-----cEe-EEEEcC---CCC-eEEEee------CCCeEEEEECCCCCCCCeeecCC--------------------
Q 018784          101 HKH-----IVR-ACAFSE---DTH-LLLTGG------FEKILRIFDLNRPDAPPREVGNS--------------------  144 (350)
Q Consensus       101 h~~-----~V~-~~~~~~---~~~-~l~sg~------~d~~v~vwd~~~~~~~~~~~~~~--------------------  144 (350)
                      -..     .+. +-....   +++ .+++++      .++.|..+|..+++.........                    
T Consensus       145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~  224 (582)
T 1flg_A          145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP  224 (582)
T ss_dssp             CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred             CCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccc
Confidence            211     111 111111   222 566654      37889999987765432211100                    


Q ss_pred             -------------------CC-cEEEEEEeCCCCcEEEEEeC-------------------C----CeEEEEECCCCcee
Q 018784          145 -------------------SG-SIRTVAWLHSDQTILSSCTD-------------------S----GGVRLWDARSGKIV  181 (350)
Q Consensus       145 -------------------~~-~v~~~~~~~~~~~~~~s~~~-------------------d----g~i~iwd~~~~~~~  181 (350)
                                         .+ .-..+++.+..+.+++..++                   |    +.|..+|.++|+.+
T Consensus       225 ~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~  304 (582)
T 1flg_A          225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVK  304 (582)
T ss_dssp             TSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEE
T ss_pred             cCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEE
Confidence                               00 00123344444555544431                   2    58999999999998


Q ss_pred             EeecCC-----------CCeEEEEEe-cCCc---EEE-EEcCCcEEEEECCCcceeeeeecCCCC---------------
Q 018784          182 QTLETK-----------SPVTSAEVS-RDGR---YIT-TADGSSVKFWDANHFGLVKGYNMPCNT---------------  230 (350)
Q Consensus       182 ~~~~~~-----------~~v~~~~~~-~~~~---~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~---------------  230 (350)
                      ...+..           .++. +... .+|+   +++ ...++.+.++|..+++.+..+......               
T Consensus       305 W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~  383 (582)
T 1flg_A          305 WFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVE  383 (582)
T ss_dssp             EEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEE
T ss_pred             EEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeE
Confidence            887542           1221 1221 4663   444 446789999999988877655443100               


Q ss_pred             -------------------------------ceeEecCCCCcEEEEe--------------------------------c
Q 018784          231 -------------------------------ESASLEPKLGNIFIAG--------------------------------G  247 (350)
Q Consensus       231 -------------------------------~~~~~~~~~~~~l~sg--------------------------------~  247 (350)
                                                     ...++.+..+.+++..                                .
T Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~  463 (582)
T 1flg_A          384 REGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDD  463 (582)
T ss_dssp             CTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSS
T ss_pred             ccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCC
Confidence                                           0112222223333321                                1


Q ss_pred             CCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccC
Q 018784          248 EDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEEN  307 (350)
Q Consensus       248 ~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~  307 (350)
                      .++.|..||+.+|+.+=...... ++..-.....+.+++.|+.|+.++.||..+.+.+-.
T Consensus       464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~  522 (582)
T 1flg_A          464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWK  522 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEE
Confidence            36789999999998764332211 121111122356777899999999999987776643

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.53  E-value=0.0005  Score=67.98  Aligned_cols=271  Identities=11%  Similarity=0.075  Sum_probs=157.6

Q ss_pred             CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccC-------ccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-------HKGAVWSCCLDANALFSASGSADFTAKLWD   89 (350)
Q Consensus        17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~g-------H~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd   89 (350)
                      ..|.++...+   +|.+.+ |+.+ -+.+||..++++......       ....|+++....++.+.+.. ..+-|.++|
T Consensus       211 ~~i~~i~~d~---~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~~Gl~~~~  284 (781)
T 3v9f_A          211 NDVRCIYKDT---NGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIAT-ELNGIMILD  284 (781)
T ss_dssp             SSEEEEEECT---TCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEE-SSSCEEEEE
T ss_pred             CceeEEEEcC---CCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEe-CCCCeEEEC
Confidence            4577776654   676655 4444 588899877665432211       23568999998888877643 335677888


Q ss_pred             CCCCCeeeeee---------------ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee--------ecCCCC
Q 018784           90 ALTGDEKHSFE---------------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE--------VGNSSG  146 (350)
Q Consensus        90 ~~~~~~~~~~~---------------h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~--------~~~~~~  146 (350)
                      ..+........               ....|.++...++|. |..|..++.|..++..........        ..-...
T Consensus       285 ~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  363 (781)
T 3v9f_A          285 LQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNK  363 (781)
T ss_dssp             TTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSS
T ss_pred             CCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCc
Confidence            76554221111               235689998888876 566777777888887543211110        011235


Q ss_pred             cEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEee----cCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceee
Q 018784          147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL----ETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVK  222 (350)
Q Consensus       147 ~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~  222 (350)
                      .|.++...+ ++.+. .|+.++.|..+|..+++.....    .....|.++...+++.+.++..++.+..+|..+.+.. 
T Consensus       364 ~v~~i~~d~-~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-  440 (781)
T 3v9f_A          364 VVSSVCDDG-QGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ-  440 (781)
T ss_dssp             CEEEEEECT-TSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE-
T ss_pred             ceEEEEEcC-CCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE-
Confidence            677776543 34444 3455567999998765432211    1235688888888898888777677889998765432 


Q ss_pred             eeec---CCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCC-----CcCEEEEEEcCCCCEEEEecCCCcE
Q 018784          223 GYNM---PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGH-----HGPVHCVRFSPGGESYASGSEDGTI  294 (350)
Q Consensus       223 ~~~~---~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h-----~~~v~~l~~sp~~~~lasgs~Dg~v  294 (350)
                      .+..   +............+.+ ..|+. +-|.+||..+++........     ...|.++...++|.+.+....+| |
T Consensus       441 ~~~~~~~~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l  517 (781)
T 3v9f_A          441 IIELEKNELLDVRVFYEDKNKKI-WIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-V  517 (781)
T ss_dssp             ECCSTTTCCCCEEEEEECTTSEE-EEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-E
T ss_pred             EeccCCCCCCeEEEEEECCCCCE-EEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-E
Confidence            2221   1112222222223444 44555 56888998776543222111     45799999998888655433344 6


Q ss_pred             EEecCC
Q 018784          295 RIWQTN  300 (350)
Q Consensus       295 ~vw~~~  300 (350)
                      ..++..
T Consensus       518 ~~~~~~  523 (781)
T 3v9f_A          518 GIYTPD  523 (781)
T ss_dssp             EEECTT
T ss_pred             EEEeCC
Confidence            667654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.49  E-value=0.0005  Score=61.97  Aligned_cols=224  Identities=7%  Similarity=-0.106  Sum_probs=138.3

Q ss_pred             CCCeeEeeCCCCceeeeccCccCCeEEEEECC-CCcEEEEeeCCCeEEEeeCCCCCeeeeee-ccccEeEEEEcCCCC-e
Q 018784           40 DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTH-L  116 (350)
Q Consensus        40 d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-h~~~V~~~~~~~~~~-~  116 (350)
                      ...|+..++........+.+. .....++|++ ++.++.+-...+.|..+++........+. .......+++.+.+. +
T Consensus        95 ~~~I~~i~~~~~~~~~~~~~~-~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~l  173 (386)
T 3v65_B           95 RIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKL  173 (386)
T ss_dssp             BSCEEEECTTSCCCEEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEE
T ss_pred             CccceeeccCCCcEEEEecCC-CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeE
Confidence            356777787766554444443 3467899986 45666676677899999987665433332 223467788887554 4


Q ss_pred             EEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC-CeEEEEECCCCceeEeec-CCCCeEEEE
Q 018784          117 LLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-GGVRLWDARSGKIVQTLE-TKSPVTSAE  194 (350)
Q Consensus       117 l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-g~i~iwd~~~~~~~~~~~-~~~~v~~~~  194 (350)
                      .++-...+.|.+.+++... ..............++..+.++.++.+-... +.|...++.......... .-...+.++
T Consensus       174 Y~~d~~~~~I~~~~~dg~~-~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla  252 (386)
T 3v65_B          174 YWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLT  252 (386)
T ss_dssp             EEEETTTTEEEECBTTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred             EEEcCCCCeEEEEeCCCCc-eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEE
Confidence            4555667889988886432 2222333345678888887778888776665 788888886443322222 223467899


Q ss_pred             EecCCcEE-EEE-cCCcEEEEECCCcceeeeeecC-CCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec
Q 018784          195 VSRDGRYI-TTA-DGSSVKFWDANHFGLVKGYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK  267 (350)
Q Consensus       195 ~~~~~~~l-~~~-~~~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~  267 (350)
                      ++|++..| .+. ..+.|..+|+............ ..+..+.+  ..+.++++-...+.|..+|..+|+.+..+.
T Consensus       253 vd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav--~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          253 IDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV--FEDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             EEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE--ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            99765544 333 3467999987643222111111 12333444  246788888888889888876776555544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.49  E-value=0.00043  Score=62.40  Aligned_cols=230  Identities=7%  Similarity=-0.050  Sum_probs=142.0

Q ss_pred             EEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeE-EEeeCCCeEEEEECCCCCCCCeeecCC
Q 018784           66 SCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLL-LTGGFEKILRIFDLNRPDAPPREVGNS  144 (350)
Q Consensus        66 ~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~sg~~d~~v~vwd~~~~~~~~~~~~~~  144 (350)
                      +.+..+.+.++++  ....|+..++........+.....+..++|.+.+..| ++-...+.|..+++..... .......
T Consensus        81 C~~~~~~~~l~~~--~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~~~~  157 (386)
T 3v65_B           81 CKALGPEPVLLFA--NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVVSTG  157 (386)
T ss_dssp             EEECSSCCEEEEE--CBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEEECSS
T ss_pred             ECCccccceeEee--cCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEEEeCC
Confidence            4445554545554  3467888888766544444444568899999765544 4555678899999874321 1222222


Q ss_pred             CCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec-CCCCeEEEEEecCCcEE-EEEc-C-CcEEEEECCCcce
Q 018784          145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYI-TTAD-G-SSVKFWDANHFGL  220 (350)
Q Consensus       145 ~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l-~~~~-~-~~i~vwd~~~~~~  220 (350)
                      ......+++.+.++.++++-...+.|.+.++........+. .-.....++++|.+..| .+.. . +.|..+++.....
T Consensus       158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~  237 (386)
T 3v65_B          158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR  237 (386)
T ss_dssp             CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc
Confidence            23345667666677787777777889998886543333332 22456889999865544 4432 3 5688888764322


Q ss_pred             eeeeecC-CCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          221 VKGYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       221 ~~~~~~~-~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                      ....... ..+..+.+.+..+.++++-+..+.|..+|+........+.........|++ ..+.++++-...+.|..++.
T Consensus       238 ~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~  316 (386)
T 3v65_B          238 RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANK  316 (386)
T ss_dssp             EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEET
T ss_pred             EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEEC
Confidence            2111111 124456677666788888888899999998654333333333445678888 45567777777888888874

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.42  E-value=4.3e-05  Score=74.11  Aligned_cols=234  Identities=14%  Similarity=0.133  Sum_probs=126.3

Q ss_pred             EEEECC-CCcEEEEeeCCC-----------eEEEeeCCCCCeee--eee--ccccEeEEEEcCCCCeEEEeeC-CCeEEE
Q 018784           66 SCCLDA-NALFSASGSADF-----------TAKLWDALTGDEKH--SFE--HKHIVRACAFSEDTHLLLTGGF-EKILRI  128 (350)
Q Consensus        66 ~v~~~~-~~~~l~s~s~Dg-----------~v~vWd~~~~~~~~--~~~--h~~~V~~~~~~~~~~~l~sg~~-d~~v~v  128 (350)
                      .+++.+ ++++++.||.+.           .+.+||..+++-..  .+.  +.....++++.+++++++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            345555 888888887653           68899988776322  222  2223345678899999999884 568999


Q ss_pred             EECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe-CC-----CeEEEEECCCCceeEee-----cCCCCeEEEEEec
Q 018784          129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT-DS-----GGVRLWDARSGKIVQTL-----ETKSPVTSAEVSR  197 (350)
Q Consensus       129 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-~d-----g~i~iwd~~~~~~~~~~-----~~~~~v~~~~~~~  197 (350)
                      ||..+.+............-.+++.. +++++++.|+ .+     ..+.+||+.+.+-...-     .....-....+..
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~  348 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS  348 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred             ecCcCCceeECCCCCccccccceEEe-cCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence            99864321100000111111123333 3556776666 34     46999999876522210     0000000001112


Q ss_pred             CCcE-EEE---------EcCCcEEEEECCCcceeeeeecCC----------CCceeEecCCCCcEEEEecCCC-------
Q 018784          198 DGRY-ITT---------ADGSSVKFWDANHFGLVKGYNMPC----------NTESASLEPKLGNIFIAGGEDM-------  250 (350)
Q Consensus       198 ~~~~-l~~---------~~~~~i~vwd~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~sg~~d~-------  250 (350)
                      ++++ +..         .....+..||..+...........          ....+.+....+++++.|+.+.       
T Consensus       349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~  428 (656)
T 1k3i_A          349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT  428 (656)
T ss_dssp             TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred             CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence            2322 222         223467888887654332211110          1112222234678999998543       


Q ss_pred             ----eEEEEEcccCeeEEee--cCCCcC-EEEEEEcCCCCEEEEecCC-----------CcEEEecCC
Q 018784          251 ----WVHVFDFHTGEQIGCN--KGHHGP-VHCVRFSPGGESYASGSED-----------GTIRIWQTN  300 (350)
Q Consensus       251 ----~i~v~d~~~~~~~~~~--~~h~~~-v~~l~~sp~~~~lasgs~D-----------g~v~vw~~~  300 (350)
                          .|.+||..+..-....  ..+... -.++...|++++++.|+.+           ..+.+||..
T Consensus       429 ~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~  496 (656)
T 1k3i_A          429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE  496 (656)
T ss_dssp             CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG
T ss_pred             CcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCC
Confidence                6788887765433222  222222 3456677899999999865           457888864

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.42  E-value=0.00085  Score=59.57  Aligned_cols=232  Identities=7%  Similarity=-0.087  Sum_probs=140.4

Q ss_pred             CccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECC-CCcEEEEeeCCCeEEEeeCCCCCeeeeee-ccccEeE
Q 018784           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRA  107 (350)
Q Consensus        30 dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-h~~~V~~  107 (350)
                      +..++++  ....|+..++........+.+. .....++|++ ++.++.+-...+.|..++.........+. .-.....
T Consensus        44 ~~~ll~~--~~~~I~~i~~~g~~~~~~~~~~-~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~g  120 (349)
T 3v64_C           44 EPVLLFA--NRIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGG  120 (349)
T ss_dssp             CCEEEEE--CBSCEEEECTTSCCEEEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred             CceeEee--cccceEEEeCCCCeeEEeecCC-CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccE
Confidence            4444443  3345777777665554444443 3467889986 45566666677899999987655333332 2244678


Q ss_pred             EEEcCCCC-eEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC-CeEEEEECCCCceeEeec
Q 018784          108 CAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-GGVRLWDARSGKIVQTLE  185 (350)
Q Consensus       108 ~~~~~~~~-~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-g~i~iwd~~~~~~~~~~~  185 (350)
                      +++.+.+. +.++-...+.|.+.+++... ..............+++.+.++.++.+-... +.|...++........+.
T Consensus       121 lavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~  199 (349)
T 3v64_C          121 LAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD  199 (349)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCC
T ss_pred             EEEecCCCeEEEEcCCCCeEEEEcCCCCc-eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEE
Confidence            89987554 44555667899999987432 2222223345678888887778888776666 789888876433222222


Q ss_pred             -CCCCeEEEEEecCCcEEE-EE-cCCcEEEEECCCcceeeeeecC-CCCceeEecCCCCcEEEEecCCCeEEEEEcccCe
Q 018784          186 -TKSPVTSAEVSRDGRYIT-TA-DGSSVKFWDANHFGLVKGYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (350)
Q Consensus       186 -~~~~v~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~  261 (350)
                       .-...+.++++|++..|. +. ..+.|..+|+............ ..+..+.+  ..+.++++-...+.|..++..+|+
T Consensus       200 ~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav--~~~~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          200 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV--FEDSLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE--ECCEEEEecCCCCeEEEEEccCCC
Confidence             223467899998665443 33 3467999987643222111111 12333444  246777887778888888866666


Q ss_pred             eEEeec
Q 018784          262 QIGCNK  267 (350)
Q Consensus       262 ~~~~~~  267 (350)
                      .+..+.
T Consensus       278 ~~~~i~  283 (349)
T 3v64_C          278 NQEIIR  283 (349)
T ss_dssp             SCEEEE
T ss_pred             ccEEec
Confidence            554443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.40  E-value=0.00017  Score=66.16  Aligned_cols=232  Identities=9%  Similarity=0.041  Sum_probs=132.2

Q ss_pred             EEEEECC-CCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeC-CC----eEEEEECCCCCCCC
Q 018784           65 WSCCLDA-NALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-EK----ILRIFDLNRPDAPP  138 (350)
Q Consensus        65 ~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~-d~----~v~vwd~~~~~~~~  138 (350)
                      ..++++| +...|..+...+.|+.+|+.++..............++|++++++|+.+.. ++    .+.+++.. +....
T Consensus       140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~  218 (430)
T 3tc9_A          140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKV  218 (430)
T ss_dssp             CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCS
T ss_pred             CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cceee
Confidence            5778887 333333333348899999876654444444456889999999996665544 21    33334432 22211


Q ss_pred             -eeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeE--eecCCCCeEEEEEecCCcEE-EEE-cCCcEEEE
Q 018784          139 -REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ--TLETKSPVTSAEVSRDGRYI-TTA-DGSSVKFW  213 (350)
Q Consensus       139 -~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l-~~~-~~~~i~vw  213 (350)
                       .... .......+++.+.++.++++-..++.|..+|...+....  ..........++++|++++| ++. ..+.|..+
T Consensus       219 ~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~  297 (430)
T 3tc9_A          219 ITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRS  297 (430)
T ss_dssp             EEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEE
Confidence             1111 122345666666577788877777899999998765422  22222346789999999854 443 35678887


Q ss_pred             ECCC--cce--eeeeecC----C------------CCc-eeEec-------CCCCcEEEEecCCCeEEEEEcccCeeEEe
Q 018784          214 DANH--FGL--VKGYNMP----C------------NTE-SASLE-------PKLGNIFIAGGEDMWVHVFDFHTGEQIGC  265 (350)
Q Consensus       214 d~~~--~~~--~~~~~~~----~------------~~~-~~~~~-------~~~~~~l~sg~~d~~i~v~d~~~~~~~~~  265 (350)
                      +...  ...  +..+...    .            .+. .+...       ...+.++++-...+.|+.++ .+|.....
T Consensus       298 ~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~~~  376 (430)
T 3tc9_A          298 DYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVTTF  376 (430)
T ss_dssp             EEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEEEE
T ss_pred             eCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEEEE
Confidence            6542  111  1111110    0            011 11111       12356677766677888887 34543322


Q ss_pred             ec-------C--C--------CcCEEEEEEcC-CCCEEEEecCCCcEEEecC
Q 018784          266 NK-------G--H--------HGPVHCVRFSP-GGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       266 ~~-------~--h--------~~~v~~l~~sp-~~~~lasgs~Dg~v~vw~~  299 (350)
                      ..       +  .        -.....|++.| ++.++++-....+|+..+.
T Consensus       377 ~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          377 AGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             EECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             EeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence            11       1  0        12578899998 5777777777788887764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.39  E-value=0.001  Score=59.12  Aligned_cols=230  Identities=6%  Similarity=-0.053  Sum_probs=141.0

Q ss_pred             EEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEE-EeeCCCeEEEEECCCCCCCCeeecCC
Q 018784           66 SCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL-TGGFEKILRIFDLNRPDAPPREVGNS  144 (350)
Q Consensus        66 ~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-sg~~d~~v~vwd~~~~~~~~~~~~~~  144 (350)
                      |.+..+++.++++  ....|+..++........+.....+..++|.+....|+ +-...+.|..+++..... .......
T Consensus        38 C~~~~~~~~ll~~--~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~~~~  114 (349)
T 3v64_C           38 CKALGPEPVLLFA--NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVVSTG  114 (349)
T ss_dssp             EEESSSCCEEEEE--CBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSS
T ss_pred             ccccccCceeEee--cccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-eEEEeCC
Confidence            4444454545554  34457777776554444444445588999997655554 545678899999875432 1222222


Q ss_pred             CCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec-CCCCeEEEEEecCCc-EEEEEc-C-CcEEEEECCCcce
Q 018784          145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGR-YITTAD-G-SSVKFWDANHFGL  220 (350)
Q Consensus       145 ~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~-~-~~i~vwd~~~~~~  220 (350)
                      ......+++.+.++.++++-...+.|.+.++........+. .-.....++++|.+. ++.+.. . +.|..+++.....
T Consensus       115 ~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~  194 (349)
T 3v64_C          115 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR  194 (349)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc
Confidence            23455677766677788887777899999987543332232 234568899998554 444433 3 5688888764322


Q ss_pred             eeeeec-CCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          221 VKGYNM-PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       221 ~~~~~~-~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                      ...... -..+..+.+.+..+.++++-+..+.|..+|+........+.........|++ ..+.++++-...+.|...+.
T Consensus       195 ~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~  273 (349)
T 3v64_C          195 RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANK  273 (349)
T ss_dssp             EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEET
T ss_pred             EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEc
Confidence            111111 1124456777667788888888899999998754333233333445677888 45666777777788888774

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.39  E-value=5.9e-05  Score=74.30  Aligned_cols=237  Identities=10%  Similarity=-0.037  Sum_probs=126.1

Q ss_pred             ceeEEEecccCCCccEEEEEeC-C----CCeeEeeCCCC-ceee-eccCccCCeEEEEECCCCcEEEEeeCC-----CeE
Q 018784           18 PVVDLFYSPITPDGFFLVSASK-D----SSPMLRNGETG-DWIG-TFEGHKGAVWSCCLDANALFSASGSAD-----FTA   85 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~-d----~~v~iw~~~~~-~~~~-~l~gH~~~V~~v~~~~~~~~l~s~s~D-----g~v   85 (350)
                      .+....|||  |||++||-+.. +    .+|+++|+.++ +.+. .+..   ....++|+||++.|+-...|     ..|
T Consensus       175 ~~~~~~~S~--PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v  249 (751)
T 2xe4_A          175 DVMEVKPAP--PEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKV  249 (751)
T ss_dssp             EEEEEEECT--TTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred             EEeeeEecC--CCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence            455666661  49988874432 2    24999999988 6432 1221   12356899999766655555     357


Q ss_pred             EEeeCCCCCe--eeeee--ccccEeEEEEcCCCCeEEEee---CCCeEEEEECCCCCCCC--eee-cCCCCcEEEEEEeC
Q 018784           86 KLWDALTGDE--KHSFE--HKHIVRACAFSEDTHLLLTGG---FEKILRIFDLNRPDAPP--REV-GNSSGSIRTVAWLH  155 (350)
Q Consensus        86 ~vWd~~~~~~--~~~~~--h~~~V~~~~~~~~~~~l~sg~---~d~~v~vwd~~~~~~~~--~~~-~~~~~~v~~~~~~~  155 (350)
                      .++++.++..  ...+.  .......+.|+|++++|+..+   ....|.++|+.++....  ..+ ....+...++.|. 
T Consensus       250 ~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~-  328 (751)
T 2xe4_A          250 WRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH-  328 (751)
T ss_dssp             EEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE-
T ss_pred             EEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee-
Confidence            8888877642  22322  234466789999999887654   23457888987653222  222 2233445556543 


Q ss_pred             CCCcEEEEEeCC----CeEEEEECCCCceeE--eecCCC--CeEEEEEecCCcEEEE-EcCC--cEEEEEC-------CC
Q 018784          156 SDQTILSSCTDS----GGVRLWDARSGKIVQ--TLETKS--PVTSAEVSRDGRYITT-ADGS--SVKFWDA-------NH  217 (350)
Q Consensus       156 ~~~~~~~s~~~d----g~i~iwd~~~~~~~~--~~~~~~--~v~~~~~~~~~~~l~~-~~~~--~i~vwd~-------~~  217 (350)
                      .++.+++....+    ..|..+|+.++....  .+....  .+..+.+.. +.++++ ..++  .|.++|+       ..
T Consensus       329 ~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~dl~~~~~~~~~  407 (751)
T 2xe4_A          329 GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRS-NYLVVAGRRAGLTRIWTMMADSQDGVFKA  407 (751)
T ss_dssp             TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECS-SEEEEEEEETTEEEEEEEECCTTTSCCCT
T ss_pred             eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEEC-CEEEEEEEeCCEEEEEEEecccccccccC
Confidence            355555554443    367777876532212  222322  234444442 233333 3455  4667775       22


Q ss_pred             cceeeeeecCCCCceeEe------cCCCCcEEEEecCC---CeEEEEEcccCe
Q 018784          218 FGLVKGYNMPCNTESASL------EPKLGNIFIAGGED---MWVHVFDFHTGE  261 (350)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~------~~~~~~~l~sg~~d---~~i~v~d~~~~~  261 (350)
                      ....+.+.++.......+      ......++++.+..   ..++.+|+.+++
T Consensus       408 g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~  460 (751)
T 2xe4_A          408 GTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS  460 (751)
T ss_dssp             TTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred             CccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            221333333332222233      12333454444432   467778877665

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.38  E-value=0.00072  Score=57.00  Aligned_cols=196  Identities=11%  Similarity=0.134  Sum_probs=130.5

Q ss_pred             eccCCceeEEEecccCCC-ccEEEEEeCCCCeeEeeCCCCceeeec--cCccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784           13 HGHSRPVVDLFYSPITPD-GFFLVSASKDSSPMLRNGETGDWIGTF--EGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~d-g~~lasgs~d~~v~iw~~~~~~~~~~l--~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd   89 (350)
                      .|=.+.++.++|+|   + +.+.++...++.|...|.. ++.++.+  .|. ...-.+++.+++.++++.-.++.+.+++
T Consensus        23 ~g~~~~lSGla~~~---~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~   97 (255)
T 3qqz_A           23 AGITNNISSLTWSA---QSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-KDLETIEYIGDNQFVISDERDYAIYVIS   97 (255)
T ss_dssp             TTCCSCEEEEEEET---TTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-SSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred             CCcccCcceeEEeC---CCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-CChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence            56566899999997   4 4555667778888888887 8877765  443 4456778888888877766778888887


Q ss_pred             CCCCCee---eee-------eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCC--CCCCCeee-------cCCCCcEEE
Q 018784           90 ALTGDEK---HSF-------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR--PDAPPREV-------GNSSGSIRT  150 (350)
Q Consensus        90 ~~~~~~~---~~~-------~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~--~~~~~~~~-------~~~~~~v~~  150 (350)
                      +......   ...       ..+.....++|.|.++.|+++.......+|.+..  ........       .........
T Consensus        98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~  177 (255)
T 3qqz_A           98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSG  177 (255)
T ss_dssp             ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCE
T ss_pred             cCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCcee
Confidence            6543321   111       1234568999999997777776654555555431  00011111       112334678


Q ss_pred             EEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC----------CCeEEEEEecCCcEEEEEcCCcEEEEE
Q 018784          151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK----------SPVTSAEVSRDGRYITTADGSSVKFWD  214 (350)
Q Consensus       151 ~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~~~i~vwd  214 (350)
                      +++.+..+.+++.....+.|..+|.. ++.+..+...          .....+++.++|++.+++..+.+..+.
T Consensus       178 l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~  250 (255)
T 3qqz_A          178 AEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFT  250 (255)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEE
T ss_pred             EEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEE
Confidence            88888888888877788899999965 5555555432          256789999999988887766555553

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.37  E-value=0.00038  Score=63.81  Aligned_cols=232  Identities=10%  Similarity=0.071  Sum_probs=134.3

Q ss_pred             eEEEEECCC---CcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCC---Ce-EEEEECCCCCC
Q 018784           64 VWSCCLDAN---ALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE---KI-LRIFDLNRPDA  136 (350)
Q Consensus        64 V~~v~~~~~---~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d---~~-v~vwd~~~~~~  136 (350)
                      -..++++++   +.++++-.. +.|+.+|..++...........+..++++++++++++-...   .. +...+......
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~  219 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT  219 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC
T ss_pred             CceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee
Confidence            357889874   666555333 89999998777655444444568999999999954443321   12 22333221111


Q ss_pred             CCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEee-c--CCCCeEEEEEecCCcEE-EEEc-CCcEE
Q 018784          137 PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-E--TKSPVTSAEVSRDGRYI-TTAD-GSSVK  211 (350)
Q Consensus       137 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~-~--~~~~v~~~~~~~~~~~l-~~~~-~~~i~  211 (350)
                      ...... .......+++.+.++.++++-..++.|+.+|..++.....+ .  .......++++|+++.| ++.. .+.|+
T Consensus       220 ~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~  298 (433)
T 4hw6_A          220 ERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIY  298 (433)
T ss_dssp             CEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             cccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEE
Confidence            001111 12234456666546777777767789999999877652222 1  12223469999999844 4433 46788


Q ss_pred             EEECCC--cce--eeeeecC----------------CCCceeEec--------CCCCcEEEEecCCCeEEEEEcccCeeE
Q 018784          212 FWDANH--FGL--VKGYNMP----------------CNTESASLE--------PKLGNIFIAGGEDMWVHVFDFHTGEQI  263 (350)
Q Consensus       212 vwd~~~--~~~--~~~~~~~----------------~~~~~~~~~--------~~~~~~l~sg~~d~~i~v~d~~~~~~~  263 (350)
                      .++...  ...  +..+...                ..+..+.+.        ...++++++-...+.|+.++. +|...
T Consensus       299 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~  377 (433)
T 4hw6_A          299 RVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT  377 (433)
T ss_dssp             EEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE
T ss_pred             EEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE
Confidence            877542  211  1111100                012223341        345678888888888999984 45433


Q ss_pred             EeecCC------------------CcCEEEEEEc-CCCCEEEEecCCCcEEEecC
Q 018784          264 GCNKGH------------------HGPVHCVRFS-PGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       264 ~~~~~h------------------~~~v~~l~~s-p~~~~lasgs~Dg~v~vw~~  299 (350)
                       ++-+.                  -.....|++. +++.++++=...++|+..++
T Consensus       378 -t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          378 -TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             -EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             -EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence             22111                  1247889999 67877777777788888764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.33  E-value=0.0017  Score=58.83  Aligned_cols=240  Identities=7%  Similarity=-0.093  Sum_probs=143.8

Q ss_pred             EEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCC-CcEEEEeeCCCeEEEeeCCCC----Ceeeeee-ccccEe
Q 018784           33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALTG----DEKHSFE-HKHIVR  106 (350)
Q Consensus        33 ~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~vWd~~~~----~~~~~~~-h~~~V~  106 (350)
                      +|+.+. ...|+..++........+. ....+.+++|++. +.+..+-...+.|+.+++...    .....+. .-..+.
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            344333 3678888877665544443 3456778999874 555666566788999987642    1222222 334578


Q ss_pred             EEEEcC-CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeC-CCeEEEEECCCCceeEee
Q 018784          107 ACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD-SGGVRLWDARSGKIVQTL  184 (350)
Q Consensus       107 ~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~-dg~i~iwd~~~~~~~~~~  184 (350)
                      .+++.+ .+++.++-...+.|.+.+++... ..............++..+.++.++.+-.. .+.|...++........+
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~-~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~  241 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  241 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCS-EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCc-eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE
Confidence            899987 45555555667889999886432 222223334457888888777777776533 367888888644333322


Q ss_pred             cC-CCCeEEEEEecCCcEEEEEc--CCcEEEEECCCcceeeeeecC---CCCceeEecCCCCcEEEEecCCCeEEEEEcc
Q 018784          185 ET-KSPVTSAEVSRDGRYITTAD--GSSVKFWDANHFGLVKGYNMP---CNTESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (350)
Q Consensus       185 ~~-~~~v~~~~~~~~~~~l~~~~--~~~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~  258 (350)
                      .. -...+.+++++++..|..++  ...|..+|+............   ..+..+.+  ..+.++++-...+.|..+|..
T Consensus       242 ~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywtd~~~~~V~~~~~~  319 (400)
T 3p5b_L          242 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRL  319 (400)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEEESSSCSEEEEESS
T ss_pred             ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEecCCCCeEEEEEcC
Confidence            22 24568899998765554433  467999998653322222211   12233333  346788888888889999977


Q ss_pred             cCeeEEeecCCCcCEEEEE
Q 018784          259 TGEQIGCNKGHHGPVHCVR  277 (350)
Q Consensus       259 ~~~~~~~~~~h~~~v~~l~  277 (350)
                      +|+.+..+.........+.
T Consensus       320 ~G~~~~~i~~~~~~p~~i~  338 (400)
T 3p5b_L          320 TGSDVNLLAENLLSPEDMV  338 (400)
T ss_dssp             SCCCCEEEECSCSCEEEEE
T ss_pred             CCCceEEEecCCCCCceEE
Confidence            7776655543333344443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.33  E-value=0.0009  Score=61.29  Aligned_cols=197  Identities=10%  Similarity=0.060  Sum_probs=114.1

Q ss_pred             CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCC---Ce-EEEeeCCC
Q 018784           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FT-AKLWDALT   92 (350)
Q Consensus        17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D---g~-v~vWd~~~   92 (350)
                      .....|+++|.+.+|.+.++-.. +.|+.++..+++...... .......+++++++.++++-...   .. +...+...
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGG
T ss_pred             CCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCC
Confidence            34567878752113666555444 788889988777664433 44557899999999966654321   22 22233222


Q ss_pred             CCe-eeeeeccccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCCCCeee-cCCCCcEEEEEEeCCCCcEEEEEeCCCe
Q 018784           93 GDE-KHSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSCTDSGG  169 (350)
Q Consensus        93 ~~~-~~~~~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~s~~~dg~  169 (350)
                      +.. ...+..-.....++++| ++.+.++-..++.|+.+|..++....... .........+++.+.++.++++-...+.
T Consensus       217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~  296 (433)
T 4hw6_A          217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC  296 (433)
T ss_dssp             TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred             CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence            211 11222233456788999 66666566667889999886443211111 1112233468887766667777777789


Q ss_pred             EEEEECC--CCcee--EeecC----------------CCCeEEEEE---------ecCCcEEEEEc-CCcEEEEEC
Q 018784          170 VRLWDAR--SGKIV--QTLET----------------KSPVTSAEV---------SRDGRYITTAD-GSSVKFWDA  215 (350)
Q Consensus       170 i~iwd~~--~~~~~--~~~~~----------------~~~v~~~~~---------~~~~~~l~~~~-~~~i~vwd~  215 (350)
                      |+.++..  ++...  ..+..                -.....+++         .+++.++++.. ++.|+.++.
T Consensus       297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred             EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence            9998864  23210  11110                123456888         67777776654 467888885

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.30  E-value=0.00067  Score=58.93  Aligned_cols=192  Identities=13%  Similarity=0.077  Sum_probs=113.9

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeC-CC-eEEEeeCCCCCe
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA-DF-TAKLWDALTGDE   95 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~-Dg-~v~vWd~~~~~~   95 (350)
                      ....+++++   +|+++++-..++.|..++... +....+.. ......+++++++.++++... ++ .|..+|..+++.
T Consensus        33 ~pegia~~~---~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~-~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~  107 (306)
T 2p4o_A           33 FLENLASAP---DGTIFVTNHEVGEIVSITPDG-NQQIHATV-EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  107 (306)
T ss_dssp             CEEEEEECT---TSCEEEEETTTTEEEEECTTC-CEEEEEEC-SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CcceEEECC---CCCEEEEeCCCCeEEEECCCC-ceEEEEeC-CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence            455777775   888888877888899898764 33333321 245778999999987766543 23 466667666654


Q ss_pred             eeeee--ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCe---------eecCCCCcEEEEEEeCCCCcEEEEE
Q 018784           96 KHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR---------EVGNSSGSIRTVAWLHSDQTILSSC  164 (350)
Q Consensus        96 ~~~~~--h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~~~s~  164 (350)
                      .....  .......++..+.+..+++-..++.|..+|.........         .....-.....+  +++++.++++-
T Consensus       108 ~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d  185 (306)
T 2p4o_A          108 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN  185 (306)
T ss_dssp             EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred             EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence            33322  122234555555555455555678888888753210000         000111223444  44556777777


Q ss_pred             eCCCeEEEEECCC-Cce--eEeecCCCCeEEEEEecCCcEEEEEc-CCcEEEEECC
Q 018784          165 TDSGGVRLWDARS-GKI--VQTLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDAN  216 (350)
Q Consensus       165 ~~dg~i~iwd~~~-~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~  216 (350)
                      ...+.|..+|+.. ++.  ...+........++++++|+++++.. .+.|.++|..
T Consensus       186 ~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          186 TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             CCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence            7788999999864 321  11111112345688999998876654 5689999975

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.29  E-value=0.0016  Score=56.87  Aligned_cols=221  Identities=6%  Similarity=-0.116  Sum_probs=134.4

Q ss_pred             CCeeEeeCCCCceeeeccCccCCeEEEEECCC-CcEEEEeeCCCeEEEeeCCC----CCeeeeee-ccccEeEEEEcCCC
Q 018784           41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALT----GDEKHSFE-HKHIVRACAFSEDT  114 (350)
Q Consensus        41 ~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~vWd~~~----~~~~~~~~-h~~~V~~~~~~~~~  114 (350)
                      ..|+..++.+.+....+.. -....+++++++ +.++.+-...+.|..+++..    ......+. .-..+..+++.+.+
T Consensus        10 ~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~   88 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (316)
T ss_dssp             SSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence            5688888877766554443 345678899875 55666766779999999865    22222222 22356788998755


Q ss_pred             C-eEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC-CeEEEEECCCCceeEee-c-CCCCe
Q 018784          115 H-LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-GGVRLWDARSGKIVQTL-E-TKSPV  190 (350)
Q Consensus       115 ~-~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-g~i~iwd~~~~~~~~~~-~-~~~~v  190 (350)
                      . +.++-...+.|.++++.... ..............++..+.++.++.+.... +.|...++.. .....+ . .-...
T Consensus        89 ~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~P  166 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWP  166 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSCE
T ss_pred             CeEEEEECCCCEEEEEeCCCCc-eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCCc
Confidence            4 44555667899999986422 1222222345678888877777777776554 6888888753 332322 1 23456


Q ss_pred             EEEEEecCCcEEEEE--cCCcEEEEECCCcceeeeeec---CCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEe
Q 018784          191 TSAEVSRDGRYITTA--DGSSVKFWDANHFGLVKGYNM---PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGC  265 (350)
Q Consensus       191 ~~~~~~~~~~~l~~~--~~~~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~  265 (350)
                      +.+++++++..|..+  ..+.|..+|........-...   ...+..+.+.  .+.++++-...+.|..++..+|+.+..
T Consensus       167 ~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~~~g~~~~~  244 (316)
T 1ijq_A          167 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNL  244 (316)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred             eEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEeCCCCcceEE
Confidence            789999876554433  346899999864322111111   1223344443  367788888888899998877765544


Q ss_pred             e
Q 018784          266 N  266 (350)
Q Consensus       266 ~  266 (350)
                      +
T Consensus       245 i  245 (316)
T 1ijq_A          245 L  245 (316)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.28  E-value=0.0022  Score=58.06  Aligned_cols=220  Identities=9%  Similarity=-0.028  Sum_probs=138.1

Q ss_pred             CCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEE-EeeCCCeEEEEECCCCC---CCCeeecCCCCcEEEEEEeCC
Q 018784           81 ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL-TGGFEKILRIFDLNRPD---APPREVGNSSGSIRTVAWLHS  156 (350)
Q Consensus        81 ~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-sg~~d~~v~vwd~~~~~---~~~~~~~~~~~~v~~~~~~~~  156 (350)
                      ....|+..++........+..-..+..++|++....|+ +-...+.|..+++....   ...............+++...
T Consensus        90 ~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~  169 (400)
T 3p5b_L           90 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  169 (400)
T ss_dssp             ETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETT
T ss_pred             ccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEec
Confidence            35788888887665555555556789999998655554 44567889999886421   122222333455677887766


Q ss_pred             CCcEEEEEeCCCeEEEEECCCCceeEeec-CCCCeEEEEEecCCc-EEEEEc--CCcEEEEECCCcceeeeeecC-CCCc
Q 018784          157 DQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGR-YITTAD--GSSVKFWDANHFGLVKGYNMP-CNTE  231 (350)
Q Consensus       157 ~~~~~~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~--~~~i~vwd~~~~~~~~~~~~~-~~~~  231 (350)
                      .+.++++-...+.|.+.++........+. .......++++|.+. ++.+..  ...|...++............ ..+.
T Consensus       170 ~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~  249 (400)
T 3p5b_L          170 HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN  249 (400)
T ss_dssp             TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEE
T ss_pred             CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceE
Confidence            77788887777899999987654433333 234568899998554 444432  357888887653322111111 2345


Q ss_pred             eeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec--CCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784          232 SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK--GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       232 ~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~--~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~  301 (350)
                      .+.+.+..+.++++-+..+.|..+|+..........  +.-.....|++. .+.++.+-...+.|..++...
T Consensus       250 glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~  320 (400)
T 3p5b_L          250 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT  320 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSS
T ss_pred             EEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCC
Confidence            567776677888888888899999986543322222  223345677773 445667777778888887433

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.25  E-value=0.002  Score=56.29  Aligned_cols=218  Identities=10%  Similarity=-0.013  Sum_probs=133.3

Q ss_pred             CCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeE-EEeeCCCeEEEEECCCC---CCCCeeecCCCCcEEEEEEeCCC
Q 018784           82 DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLL-LTGGFEKILRIFDLNRP---DAPPREVGNSSGSIRTVAWLHSD  157 (350)
Q Consensus        82 Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~sg~~d~~v~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~  157 (350)
                      ...|+..|+.+......+..-..+.+++|.+.+..| ++-..++.|..+++...   ................+++.+.+
T Consensus         9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~   88 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (316)
T ss_dssp             BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence            356888888776655445445567899999866544 45556789999998741   11112222222345677776567


Q ss_pred             CcEEEEEeCCCeEEEEECCCCceeEeec-CCCCeEEEEEecCCc-EEEEEcC--CcEEEEECCCcceeeeee-cC-CCCc
Q 018784          158 QTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGR-YITTADG--SSVKFWDANHFGLVKGYN-MP-CNTE  231 (350)
Q Consensus       158 ~~~~~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~-~l~~~~~--~~i~vwd~~~~~~~~~~~-~~-~~~~  231 (350)
                      +.++++-...+.|.+.|+........+. .......++++|.+. ++.+..+  +.|..+++..... +.+. .. ..+.
T Consensus        89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~~~~~~~~~~P~  167 (316)
T 1ijq_A           89 SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPN  167 (316)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCSCEE
T ss_pred             CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-EEEEECCCCCce
Confidence            7777777777899999987544333332 234568899998554 4444433  5788888754322 1111 11 2234


Q ss_pred             eeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec--CCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784          232 SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK--GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       232 ~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~--~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~  301 (350)
                      .+.+.+..+.++++-+..+.|..+|+..........  ........|++. .+.++++-...+.|..++...
T Consensus       168 gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~  238 (316)
T 1ijq_A          168 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLT  238 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTT
T ss_pred             EEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCC
Confidence            566776667888888888899999987432221112  223346777875 466677777788888887543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.23  E-value=0.0022  Score=56.15  Aligned_cols=227  Identities=10%  Similarity=0.012  Sum_probs=137.4

Q ss_pred             CcEEEEeeCCCeEEEeeCCCCC--eeeeeeccccEeEEEEcCCCC-eEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEE
Q 018784           73 ALFSASGSADFTAKLWDALTGD--EKHSFEHKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIR  149 (350)
Q Consensus        73 ~~~l~s~s~Dg~v~vWd~~~~~--~~~~~~h~~~V~~~~~~~~~~-~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~  149 (350)
                      ..++++.  ...|+..++....  ....+..-..+.+++|.+... +..+-...+.|..+++.............-....
T Consensus         5 p~ll~~~--~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~   82 (318)
T 3sov_A            5 PLLLYAN--RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD   82 (318)
T ss_dssp             CEEEEEC--EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC
T ss_pred             cEEEEEc--cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc
Confidence            3345543  5678888887653  222223334577899998544 4455566788999998754322222222223455


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEee-cCCCCeEEEEEecC-CcEEEEEc--CCcEEEEECCCcceeeeee
Q 018784          150 TVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-ETKSPVTSAEVSRD-GRYITTAD--GSSVKFWDANHFGLVKGYN  225 (350)
Q Consensus       150 ~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~~~~--~~~i~vwd~~~~~~~~~~~  225 (350)
                      .+++.+.++.++.+-...+.|.++++........+ ........+++.|. +.++.+..  ...|...++..........
T Consensus        83 glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~  162 (318)
T 3sov_A           83 GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN  162 (318)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred             EEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEE
Confidence            67776667778777777789999998654332222 23345688999986 44444442  4678888875432111111


Q ss_pred             cC-CCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCC
Q 018784          226 MP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPP  302 (350)
Q Consensus       226 ~~-~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~  302 (350)
                      .. ..+..+.+.+..+.++++-+..+.|..+|+..........+.......+++. .+.++.+-...+.|..++....
T Consensus       163 ~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G  239 (318)
T 3sov_A          163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTG  239 (318)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCC
Confidence            11 2234566777677888888888999999986433222223334456777775 3456667777788888886433

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.22  E-value=0.0035  Score=61.74  Aligned_cols=223  Identities=7%  Similarity=-0.110  Sum_probs=135.6

Q ss_pred             CCCeeEeeCCCCceeeeccCccCCeEEEEECC-CCcEEEEeeCCCeEEEeeCCCC----Ceeeeee-ccccEeEEEEcCC
Q 018784           40 DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALTG----DEKHSFE-HKHIVRACAFSED  113 (350)
Q Consensus        40 d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~~----~~~~~~~-h~~~V~~~~~~~~  113 (350)
                      ...|+..++...+....+.+ ...+.++++++ ++.++++-...+.|+.+++...    .....+. .-..+..|++.+.
T Consensus       403 ~~~Ir~i~l~~~~~~~l~~~-~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~  481 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  481 (791)
T ss_dssp             BSSEEEECTTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred             ccceeEeeccCCcceeeecC-CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeec
Confidence            35677777766555444443 35567889987 4566667667788999887642    1222222 3345678999887


Q ss_pred             CCeE-EEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC-CeEEEEECCCCceeEeecC-CCCe
Q 018784          114 THLL-LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-GGVRLWDARSGKIVQTLET-KSPV  190 (350)
Q Consensus       114 ~~~l-~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-g~i~iwd~~~~~~~~~~~~-~~~v  190 (350)
                      +..| ++-...+.|.+.++.... ..............+++.+..+.++.+-... +.|...++........+.. -...
T Consensus       482 ~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P  560 (791)
T 3m0c_C          482 HSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP  560 (791)
T ss_dssp             TTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCE
T ss_pred             CCcEEEEecCCCeEEEEeCCCCe-EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCc
Confidence            6544 455667899999987432 2223333445678898887777777775444 6788888865443333332 2457


Q ss_pred             EEEEEecCCcEEEEEc--CCcEEEEECCCcceeeeeecC---CCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEe
Q 018784          191 TSAEVSRDGRYITTAD--GSSVKFWDANHFGLVKGYNMP---CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGC  265 (350)
Q Consensus       191 ~~~~~~~~~~~l~~~~--~~~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~  265 (350)
                      +.|++++.+..|..++  ...|..+++............   .....+.+  ..+.++++-...+.|...|..+|+.+..
T Consensus       561 ~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~~~  638 (791)
T 3m0c_C          561 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNL  638 (791)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCCCEE
T ss_pred             eEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCCCcceEE
Confidence            8899997655444333  457888988654332222211   12233333  3457888888888899888777755443


Q ss_pred             e
Q 018784          266 N  266 (350)
Q Consensus       266 ~  266 (350)
                      +
T Consensus       639 l  639 (791)
T 3m0c_C          639 L  639 (791)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.18  E-value=0.0019  Score=59.75  Aligned_cols=236  Identities=11%  Similarity=0.040  Sum_probs=139.3

Q ss_pred             eEEEEECCC--CcEEEEeeCCCeEEEeeCCCCCeeeeeec----cccEeEEEE-------cCCCCeEEEeeCCC------
Q 018784           64 VWSCCLDAN--ALFSASGSADFTAKLWDALTGDEKHSFEH----KHIVRACAF-------SEDTHLLLTGGFEK------  124 (350)
Q Consensus        64 V~~v~~~~~--~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h----~~~V~~~~~-------~~~~~~l~sg~~d~------  124 (350)
                      -..++++|.  +.++++-...+.|++.|+.++.......-    ....+.++|       ++++..|+.+...+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            357888873  55666655557788889877654433321    235899999       99998666665543      


Q ss_pred             -eEEEEECCC-CCCC--C--eeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECC-------CCce-----------
Q 018784          125 -ILRIFDLNR-PDAP--P--REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR-------SGKI-----------  180 (350)
Q Consensus       125 -~v~vwd~~~-~~~~--~--~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~-------~~~~-----------  180 (350)
                       .|.+++... +...  .  ..... -.....++..+.++.++++...++.|..+|+.       ++..           
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             ceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence             255665432 1111  0  11111 12234555666678888888888999999987       4543           


Q ss_pred             ---eEeecCCCCeEEEEEecCCcEEE-EE-cCCcEEEEEC--CCcce--eeeeecC----------------CCCc-eeE
Q 018784          181 ---VQTLETKSPVTSAEVSRDGRYIT-TA-DGSSVKFWDA--NHFGL--VKGYNMP----------------CNTE-SAS  234 (350)
Q Consensus       181 ---~~~~~~~~~v~~~~~~~~~~~l~-~~-~~~~i~vwd~--~~~~~--~~~~~~~----------------~~~~-~~~  234 (350)
                         +..+........++++|+|++|. +. ....|+.+|.  .....  ...+...                ..+. .+.
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~  379 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVF  379 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEE
Confidence               12222234457899999998543 33 3467888554  32211  0111100                0111 122


Q ss_pred             ecC------CCCcEEEEecCCCeEEEEEcccCeeEEeecCC------------------------CcCEEEEEEcCC-CC
Q 018784          235 LEP------KLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGH------------------------HGPVHCVRFSPG-GE  283 (350)
Q Consensus       235 ~~~------~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h------------------------~~~v~~l~~sp~-~~  283 (350)
                      ...      ..+.++++-+..+.|+.++ .+|. +.++-|.                        -.....|++.++ +.
T Consensus       380 vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~  457 (496)
T 3kya_A          380 VKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEM  457 (496)
T ss_dssp             EECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTE
T ss_pred             EccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCE
Confidence            221      3467788878888899998 4553 3232111                        124678999996 88


Q ss_pred             EEEEecCCCcEEEecCCCC
Q 018784          284 SYASGSEDGTIRIWQTNPP  302 (350)
Q Consensus       284 ~lasgs~Dg~v~vw~~~~~  302 (350)
                      ++++=+...+|+.+++...
T Consensus       458 lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          458 FYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             EEEEETTTTEEEEEEECCC
T ss_pred             EEEEeCCCCEEEEEECCCC
Confidence            8888888889999987543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.16  E-value=0.00048  Score=67.80  Aligned_cols=199  Identities=10%  Similarity=0.015  Sum_probs=109.6

Q ss_pred             cCccC-CeEEEEEC-CCCcEEE-EeeCC----CeEEEeeCCCC-CeeeeeeccccEeEEEEcCCCCeEEEeeCC-----C
Q 018784           58 EGHKG-AVWSCCLD-ANALFSA-SGSAD----FTAKLWDALTG-DEKHSFEHKHIVRACAFSEDTHLLLTGGFE-----K  124 (350)
Q Consensus        58 ~gH~~-~V~~v~~~-~~~~~l~-s~s~D----g~v~vWd~~~~-~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d-----~  124 (350)
                      ++|.- .+...+|+ |||+++| +.+.+    ..|+++|+.++ +.+.. .-......+.|+||++.|+-...|     .
T Consensus       169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~  247 (751)
T 2xe4_A          169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLREN  247 (751)
T ss_dssp             TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEE
T ss_pred             cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCC
Confidence            34543 67788999 9998766 33333    35999999888 52211 011223568899999877766654     3


Q ss_pred             eEEEEECCCCCCCCeee--cCCCCcEEEEEEeCCCCcEEEEEeC--CCeEEEEECCCCc-ee--EeecC--CCCeEEEEE
Q 018784          125 ILRIFDLNRPDAPPREV--GNSSGSIRTVAWLHSDQTILSSCTD--SGGVRLWDARSGK-IV--QTLET--KSPVTSAEV  195 (350)
Q Consensus       125 ~v~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~s~~~--dg~i~iwd~~~~~-~~--~~~~~--~~~v~~~~~  195 (350)
                      .|.++++.++.......  .........+.|++++..++++...  ...|.++|+.++. ..  ..+..  .....+..|
T Consensus       248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~  327 (751)
T 2xe4_A          248 KVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQM  327 (751)
T ss_dssp             EEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEE
T ss_pred             EEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEee
Confidence            57778886543221121  1223345677888877766665543  3468888988752 22  33322  234445554


Q ss_pred             ecCCcEEEEEc-C--C--cEEEEECCCcceeee--eecCCCCceeEecCCCCcEEEEecCCCe--EEEEEc
Q 018784          196 SRDGRYITTAD-G--S--SVKFWDANHFGLVKG--YNMPCNTESASLEPKLGNIFIAGGEDMW--VHVFDF  257 (350)
Q Consensus       196 ~~~~~~l~~~~-~--~--~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~sg~~d~~--i~v~d~  257 (350)
                      ...+.++..++ +  +  .|..+|+.+....+.  +..........+....+.++++...++.  |+++++
T Consensus       328 ~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          328 HGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             ETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred             eeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence            44555555543 2  2  566677754211111  1111111112233334566777777775  555664

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.07  E-value=0.0016  Score=57.21  Aligned_cols=200  Identities=15%  Similarity=0.244  Sum_probs=122.2

Q ss_pred             EEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCC----Cc----EEEEeeC--CCeEEEeeC
Q 018784           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN----AL----FSASGSA--DFTAKLWDA   90 (350)
Q Consensus        21 ~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~----~~----~l~s~s~--Dg~v~vWd~   90 (350)
                      +++.+|..|...+++.....+-+.+||+ +|+.+..+..  +.++.|.+-+.    ++    .++|--.  +.+|+++++
T Consensus        30 avw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~i  106 (355)
T 3amr_A           30 AIWLDPKTPQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI  106 (355)
T ss_dssp             EEECCSSCGGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEE
T ss_pred             cEecCCCCCCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEE
Confidence            6677787777666776677788999999 8999888864  55666665442    22    2444444  689999965


Q ss_pred             --CCCCeeeeeec---c-----ccEeEEEE--cCC-CC-eEEEeeCCCeEEEEECCC---CCCCCe--eecCCCCcEEEE
Q 018784           91 --LTGDEKHSFEH---K-----HIVRACAF--SED-TH-LLLTGGFEKILRIFDLNR---PDAPPR--EVGNSSGSIRTV  151 (350)
Q Consensus        91 --~~~~~~~~~~h---~-----~~V~~~~~--~~~-~~-~l~sg~~d~~v~vwd~~~---~~~~~~--~~~~~~~~v~~~  151 (350)
                        .++. +..+..   +     ..++.+++  +|. ++ ++++...++.+..|++..   +....+  ......+.+..|
T Consensus       107 Dp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~Egc  185 (355)
T 3amr_A          107 DGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGM  185 (355)
T ss_dssp             CTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEE
T ss_pred             CCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceE
Confidence              4443 333311   1     45667777  674 43 577888889999998842   111111  111234467777


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEECC-----CCceeEeecCC---CCeEEEEEe--cCCc-EEEEEc--CCcEEEEECC-C
Q 018784          152 AWLHSDQTILSSCTDSGGVRLWDAR-----SGKIVQTLETK---SPVTSAEVS--RDGR-YITTAD--GSSVKFWDAN-H  217 (350)
Q Consensus       152 ~~~~~~~~~~~s~~~dg~i~iwd~~-----~~~~~~~~~~~---~~v~~~~~~--~~~~-~l~~~~--~~~i~vwd~~-~  217 (350)
                      ...+..+. +..+-++..|..+|.+     +++.+..+...   ..+..+.+.  ++++ +|++++  +....+||.. +
T Consensus       186 vvDd~~g~-Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~  264 (355)
T 3amr_A          186 AADDEYGR-LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGK  264 (355)
T ss_dssp             EEETTTTE-EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             EEcCCCCe-EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCC
Confidence            76654454 4455677667667754     34455554332   467778774  4444 454443  4689999986 4


Q ss_pred             cceeeeee
Q 018784          218 FGLVKGYN  225 (350)
Q Consensus       218 ~~~~~~~~  225 (350)
                      .+.+..+.
T Consensus       265 ~~~vg~f~  272 (355)
T 3amr_A          265 NKYVADFR  272 (355)
T ss_dssp             CCEEEEEE
T ss_pred             CcEEEEEE
Confidence            55554443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.01  E-value=0.014  Score=57.44  Aligned_cols=230  Identities=10%  Similarity=-0.011  Sum_probs=138.0

Q ss_pred             EECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCC-eEEEeeCCCeEEEEECCCCC---CCCeeecC
Q 018784           68 CLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPD---APPREVGN  143 (350)
Q Consensus        68 ~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~-~l~sg~~d~~v~vwd~~~~~---~~~~~~~~  143 (350)
                      ++.....++++  ....|+..++........+.....+..++|.+... ++++-...+.|+.+++....   ........
T Consensus       391 ~~~~~p~Ll~a--n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~  468 (791)
T 3m0c_C          391 AVGSIAYLFFT--NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR  468 (791)
T ss_dssp             ETTSCCEEEEE--CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS
T ss_pred             ecccccccccc--cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec
Confidence            33333344443  34567877876655444444556688999998554 44555567889999886421   11122222


Q ss_pred             CCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec-CCCCeEEEEEecCC-cEEEEEcC--CcEEEEECCCcc
Q 018784          144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDG-RYITTADG--SSVKFWDANHFG  219 (350)
Q Consensus       144 ~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~--~~i~vwd~~~~~  219 (350)
                      .......+++...++.++++-...+.|.+.++........+. .-.....|++.|.+ .++.+..+  ..|...++....
T Consensus       469 ~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~  548 (791)
T 3m0c_C          469 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  548 (791)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred             CCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc
Confidence            334456777766677888888888899999987554333332 23457889999864 44444422  568888876543


Q ss_pred             eeeeeecC-CCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecC--CCcCEEEEEEcCCCCEEEEecCCCcEEE
Q 018784          220 LVKGYNMP-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG--HHGPVHCVRFSPGGESYASGSEDGTIRI  296 (350)
Q Consensus       220 ~~~~~~~~-~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~--h~~~v~~l~~sp~~~~lasgs~Dg~v~v  296 (350)
                      ........ ..+..+.+.+..+.++++-...+.|..+++........+..  .-.....|++.. +.++++-...+.|..
T Consensus       549 ~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~  627 (791)
T 3m0c_C          549 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFS  627 (791)
T ss_dssp             EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEE
T ss_pred             eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEE
Confidence            32222111 23455667766778888878888999999865433333322  223456777743 356667667777777


Q ss_pred             ecCC
Q 018784          297 WQTN  300 (350)
Q Consensus       297 w~~~  300 (350)
                      .+..
T Consensus       628 ~dk~  631 (791)
T 3m0c_C          628 ANRL  631 (791)
T ss_dssp             EETT
T ss_pred             EeCC
Confidence            7643

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.00  E-value=0.002  Score=56.55  Aligned_cols=192  Identities=8%  Similarity=0.116  Sum_probs=112.4

Q ss_pred             CcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCC----CC---eEEEee-C--CCeEEEEECCCCCCCCeeec
Q 018784           73 ALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSED----TH---LLLTGG-F--EKILRIFDLNRPDAPPREVG  142 (350)
Q Consensus        73 ~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~----~~---~l~sg~-~--d~~v~vwd~~~~~~~~~~~~  142 (350)
                      ..++++....+-+.++|+ .++.+..+.. +.++.+.+-|.    ++   ++++.. .  +++|++|++...........
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~  117 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT  117 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence            345566667789999999 7887777653 44566655552    22   233333 3  58999997742222222221


Q ss_pred             C-------CCCcEEEEEE--eCCCC-cEEEEEeCCCeEEEEECC-------CCceeEeecCCCCeEEEEEecCCcE-EEE
Q 018784          143 N-------SSGSIRTVAW--LHSDQ-TILSSCTDSGGVRLWDAR-------SGKIVQTLETKSPVTSAEVSRDGRY-ITT  204 (350)
Q Consensus       143 ~-------~~~~v~~~~~--~~~~~-~~~~s~~~dg~i~iwd~~-------~~~~~~~~~~~~~v~~~~~~~~~~~-l~~  204 (350)
                      .       ....+..++.  .+..+ .+++....+|.+..|++.       +.+.++++...+.+..+.+.+.... +++
T Consensus       118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~  197 (355)
T 3amr_A          118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIA  197 (355)
T ss_dssp             CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEE
T ss_pred             ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEe
Confidence            1       1134555555  34344 356666777999999882       3467788888888888999876544 455


Q ss_pred             EcCCcEEEEECC-----CcceeeeeecC---CCCceeEecC-CCCc-EEEEec-CCCeEEEEEcc-cCeeEEee
Q 018784          205 ADGSSVKFWDAN-----HFGLVKGYNMP---CNTESASLEP-KLGN-IFIAGG-EDMWVHVFDFH-TGEQIGCN  266 (350)
Q Consensus       205 ~~~~~i~vwd~~-----~~~~~~~~~~~---~~~~~~~~~~-~~~~-~l~sg~-~d~~i~v~d~~-~~~~~~~~  266 (350)
                      -.+..|..+|.+     +...+......   .....+.+.+ .+++ +|++.+ .++.+.+||.. +.+.+..+
T Consensus       198 eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          198 EEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             ETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             cccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence            556567777754     23344333222   1233344432 2233 555555 56799999996 55555544

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.99  E-value=0.0069  Score=52.90  Aligned_cols=205  Identities=7%  Similarity=-0.087  Sum_probs=124.4

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCcee-eeccCccCCeEEEEECC-CCcEEEEeeCCCeEEEeeCCCCCe
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI-GTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALTGDE   95 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~-~~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~~~~   95 (350)
                      ...+++|++  .++.+..+-...+.|..++...+... ..+...-.....+++++ .+.+.++-...+.|.+.++.....
T Consensus        36 ~~~~ld~d~--~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~  113 (318)
T 3sov_A           36 DAAAVDFVF--SHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  113 (318)
T ss_dssp             EEEEEEEEG--GGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             ccEEEEEEe--CCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE
Confidence            355777775  24566667667777888887655321 11221123345678875 556666766778999999865433


Q ss_pred             eeee-eccccEeEEEEcCCCCeEEEee--CCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEE
Q 018784           96 KHSF-EHKHIVRACAFSEDTHLLLTGG--FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (350)
Q Consensus        96 ~~~~-~h~~~V~~~~~~~~~~~l~sg~--~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i  172 (350)
                      ...+ ..-.....+++.|.+..|+...  ..+.|...+++.. .........-.....+++.+.++.++.+-+..+.|..
T Consensus       114 ~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~  192 (318)
T 3sov_A          114 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK  192 (318)
T ss_dssp             EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEE
Confidence            3222 2334578999998765555544  3578888887632 2222222233457789998878888888777889999


Q ss_pred             EECCCCceeEeec-CCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeee
Q 018784          173 WDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYN  225 (350)
Q Consensus       173 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~  225 (350)
                      +|+........+. .......+++..+..|.+-...+.|..+|..+++....+.
T Consensus       193 ~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          193 SNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             EETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            9986433222222 2234556777654334443345678888887665544433

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.96  E-value=0.0061  Score=51.28  Aligned_cols=192  Identities=13%  Similarity=0.112  Sum_probs=118.1

Q ss_pred             ccEeEEEEcCCCCeEE-EeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCce-
Q 018784          103 HIVRACAFSEDTHLLL-TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI-  180 (350)
Q Consensus       103 ~~V~~~~~~~~~~~l~-sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~-  180 (350)
                      +.+..++|.|++..|+ +...++.|...|+. +................+++.. ++.++++.-.++.+.++++..... 
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~~i  104 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNSEV  104 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTCCE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCCee
Confidence            4589999999876555 46667888888876 3322222122234567778764 456767766778899988755432 


Q ss_pred             --eEeec-------CCCCeEEEEEecCCc-EEEEEcCC--cEEEEECC-Ccceeeeee--------cCCCCceeEecCCC
Q 018784          181 --VQTLE-------TKSPVTSAEVSRDGR-YITTADGS--SVKFWDAN-HFGLVKGYN--------MPCNTESASLEPKL  239 (350)
Q Consensus       181 --~~~~~-------~~~~v~~~~~~~~~~-~l~~~~~~--~i~vwd~~-~~~~~~~~~--------~~~~~~~~~~~~~~  239 (350)
                        +....       .+.....++++|.+. ++++....  .|..|+.. ....+....        .-.....+.+.|..
T Consensus       105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~t  184 (255)
T 3qqz_A          105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQK  184 (255)
T ss_dssp             EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTT
T ss_pred             eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCC
Confidence              22221       234568999999874 44444433  34445411 100111110        01234567788888


Q ss_pred             CcEEEEecCCCeEEEEEcccCeeEEee--c-CC------CcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          240 GNIFIAGGEDMWVHVFDFHTGEQIGCN--K-GH------HGPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       240 ~~~l~sg~~d~~i~v~d~~~~~~~~~~--~-~h------~~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      +++++.....+.+..+|.. |+.+..+  . +.      -.....|+|.|+|+++++ |+...++.+.
T Consensus       185 g~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          185 NTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             TEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred             CeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence            8999999999999999976 4454433  2 22      125789999999986665 7777777664

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.91  E-value=0.018  Score=55.28  Aligned_cols=221  Identities=8%  Similarity=-0.114  Sum_probs=136.7

Q ss_pred             CCCCeeEeeCCCCceeeecc-CccCCeEEEEECCC-CcEEEEeeCCCeEEEeeCCCCCeeeeeec-cccEeEEEEcCCCC
Q 018784           39 KDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALTGDEKHSFEH-KHIVRACAFSEDTH  115 (350)
Q Consensus        39 ~d~~v~iw~~~~~~~~~~l~-gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h-~~~V~~~~~~~~~~  115 (350)
                      ....|+..++++......+. ..-.....++|++. +.++.+-..++.|+.+++........+.. -..+..+++.+.+.
T Consensus        13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~   92 (628)
T 4a0p_A           13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK   92 (628)
T ss_dssp             ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred             eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence            44678888887654433222 12345678999875 55566766789999998865443333322 23577888887655


Q ss_pred             eE-EEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe-CCCeEEEEECCCCceeEeecCCCCeEEE
Q 018784          116 LL-LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT-DSGGVRLWDARSGKIVQTLETKSPVTSA  193 (350)
Q Consensus       116 ~l-~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-~dg~i~iwd~~~~~~~~~~~~~~~v~~~  193 (350)
                      .| ++-...+.|.+.++.... ........-.....++..|..+.++.+-. ..+.|...++...........-...+.+
T Consensus        93 ~LY~tD~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~Gl  171 (628)
T 4a0p_A           93 NLYWADTGTNRIEVSKLDGQH-RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGL  171 (628)
T ss_dssp             EEEEEETTTTEEEEEETTSTT-CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEE
T ss_pred             EEEEEECCCCEEEEEecCCCc-EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceE
Confidence            44 555567889999986432 22222234456788988877777777652 2467888887654433333344567889


Q ss_pred             EEecCCcEEEEE--cCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCee
Q 018784          194 EVSRDGRYITTA--DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ  262 (350)
Q Consensus       194 ~~~~~~~~l~~~--~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~  262 (350)
                      ++++++..|..+  ..+.|..+|+..............+..+.+.  .+.++++-...+.|...|..+|+.
T Consensus       172 alD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~--~~~ly~tD~~~~~I~~~dk~tg~~  240 (628)
T 4a0p_A          172 TIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQY--QDYIYWTDWSRRSIERANKTSGQN  240 (628)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTCCS
T ss_pred             EEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEE--CCEEEEecCCCCEEEEEECCCCCc
Confidence            999976555443  3467899998653321111111223344444  367888887888999999776653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.91  E-value=0.0098  Score=52.09  Aligned_cols=229  Identities=7%  Similarity=-0.045  Sum_probs=118.6

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCCCeeEee--CCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeE-EEeeCCC
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRN--GETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA-KLWDALT   92 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~--~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v-~vWd~~~   92 (350)
                      ..++..|.|.+    +..++.| .++.+..-.  .++.+.+.....+.+.+..+.+.+++.+++.+. +|.| +-+|-..
T Consensus        79 ~~~~~~i~~~~----~~~~~~g-~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~DgG~  152 (327)
T 2xbg_A           79 DYRFNSVSFQG----NEGWIVG-EPPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYRTKDSGK  152 (327)
T ss_dssp             CCEEEEEEEET----TEEEEEE-ETTEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEEESSTTS
T ss_pred             CccEEEEEecC----CeEEEEE-CCCeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC-CccEEEEcCCCC
Confidence            34678888864    4455544 445443311  122222222223445677777766777766654 5543 4445211


Q ss_pred             CCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEE
Q 018784           93 GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (350)
Q Consensus        93 ~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i  172 (350)
                      .=..........+..+++.|++.+++.+...+..+.+|-. +..-..........+..+.+.+++ .+++. +.+|.+++
T Consensus       153 tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g-~~~~~-~~~G~~~~  229 (327)
T 2xbg_A          153 NWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDG-RLWMI-VNGGKIAF  229 (327)
T ss_dssp             SEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTS-CEEEE-ETTTEEEE
T ss_pred             CCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCC-CEEEE-eCCceEEE
Confidence            1011112344568899999998888777665555555531 111111112234567778776544 44443 45688877


Q ss_pred             EECCCCceeEeecC-----CCCeEEEEEecCCcEEEEEcCCcEEEEECCC---cceeeee-ecCCCCceeEecCCCCcEE
Q 018784          173 WDARSGKIVQTLET-----KSPVTSAEVSRDGRYITTADGSSVKFWDANH---FGLVKGY-NMPCNTESASLEPKLGNIF  243 (350)
Q Consensus       173 wd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~l  243 (350)
                      .+...++....+..     ...+..+.+.+++.+++++.++.+. +....   ...+... ..+.....+.+..  +..+
T Consensus       230 s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~--~~~~  306 (327)
T 2xbg_A          230 SDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALL-CSQDGGQTWQQDVDVKKVPSNFYKILFFS--PDQG  306 (327)
T ss_dssp             EETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEE-EESSTTSSCEECGGGTTSSSCCCEEEEEE--TTEE
T ss_pred             ecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeEE-EeCCCCcccEEcCccCCCCCCeEEEEEEC--CCce
Confidence            75333443333321     2357888888888888887777663 33222   2222110 1122233344432  3445


Q ss_pred             EEecCCCeEEEEE
Q 018784          244 IAGGEDMWVHVFD  256 (350)
Q Consensus       244 ~sg~~d~~i~v~d  256 (350)
                      ++++.+|.|.-++
T Consensus       307 ~~~G~~G~i~~~~  319 (327)
T 2xbg_A          307 FILGQKGILLRYV  319 (327)
T ss_dssp             EEECSTTEEEEEC
T ss_pred             EEEcCCceEEEEc
Confidence            6666778766554

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.89  E-value=0.0011  Score=60.74  Aligned_cols=153  Identities=15%  Similarity=0.118  Sum_probs=98.1

Q ss_pred             cEEEEEEeC-CCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEE-EEEcC-C----cEEEEECCCcc
Q 018784          147 SIRTVAWLH-SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TTADG-S----SVKFWDANHFG  219 (350)
Q Consensus       147 ~v~~~~~~~-~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~-~----~i~vwd~~~~~  219 (350)
                      ....+++.+ .++.++++-.. +.|+.+|+..++.............+++++++++| ++... +    .+.+++. ...
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~  215 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG  215 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred             CCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence            345677776 35556655444 78999999877655544545567889999999854 44331 1    2333443 222


Q ss_pred             ee--eeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEee-cCCCcCEEEEEEcCCCC-EEEEecCCCcEE
Q 018784          220 LV--KGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCN-KGHHGPVHCVRFSPGGE-SYASGSEDGTIR  295 (350)
Q Consensus       220 ~~--~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~-~~h~~~v~~l~~sp~~~-~lasgs~Dg~v~  295 (350)
                      ..  ..+.....+..+.+.+..+.++++-..++.|+.|+...+...... .+.......|+|+|+++ ++++-...+.|.
T Consensus       216 ~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~  295 (430)
T 3tc9_A          216 FKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL  295 (430)
T ss_dssp             SCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence            21  122212334556677656888888888899999998876542222 12224578999999999 566777888999


Q ss_pred             EecCCC
Q 018784          296 IWQTNP  301 (350)
Q Consensus       296 vw~~~~  301 (350)
                      .++.+.
T Consensus       296 ~~~~d~  301 (430)
T 3tc9_A          296 RSDYDW  301 (430)
T ss_dssp             EEEEET
T ss_pred             EEeCCc
Confidence            988653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.86  E-value=0.0029  Score=54.51  Aligned_cols=225  Identities=12%  Similarity=0.093  Sum_probs=111.0

Q ss_pred             CccEEEEEe-CC-----CCeeEeeCCCCceeee--ccCccCCeEEEEECCCCcEEEEeeCC-----CeEEEeeCCCCC--
Q 018784           30 DGFFLVSAS-KD-----SSPMLRNGETGDWIGT--FEGHKGAVWSCCLDANALFSASGSAD-----FTAKLWDALTGD--   94 (350)
Q Consensus        30 dg~~lasgs-~d-----~~v~iw~~~~~~~~~~--l~gH~~~V~~v~~~~~~~~l~s~s~D-----g~v~vWd~~~~~--   94 (350)
                      ++.+++.|+ .+     ..+.++|..+.++...  +......-.++.  .++.+++.||.+     ..+.++|..+..  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            456666676 33     3577889888776532  221111111222  356677777765     468888987765  


Q ss_pred             -eeee--eeccccEeEEEEcCCCCeEEEeeCC-----CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeC
Q 018784           95 -EKHS--FEHKHIVRACAFSEDTHLLLTGGFE-----KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD  166 (350)
Q Consensus        95 -~~~~--~~h~~~V~~~~~~~~~~~l~sg~~d-----~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~  166 (350)
                       -...  +.....-.++.. .++++++.|+.+     ..+.+||+.+.+............-.+++..  ++.+++.|+.
T Consensus        92 ~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~  168 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGY  168 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCB
T ss_pred             eeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCC
Confidence             2221  111111112222 256677777654     3578888765432111101111011112222  4556666654


Q ss_pred             C-----CeEEEEECCCCceeEe--ecCCCCeEEEEEecCCcEEEEE-c-----CCcEEEEECCCcceeeeeecCCCCcee
Q 018784          167 S-----GGVRLWDARSGKIVQT--LETKSPVTSAEVSRDGRYITTA-D-----GSSVKFWDANHFGLVKGYNMPCNTESA  233 (350)
Q Consensus       167 d-----g~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~-~-----~~~i~vwd~~~~~~~~~~~~~~~~~~~  233 (350)
                      +     ..+.++|+.+.+-...  +.....-.++.. -++++++.+ .     -..+.+||+.+..-...-.++......
T Consensus       169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~  247 (301)
T 2vpj_A          169 DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYV  247 (301)
T ss_dssp             CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC
T ss_pred             CCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccce
Confidence            3     4688999887642221  111111112222 245555543 2     246899999876543332333222221


Q ss_pred             EecCCCCcEEEEecCC-----CeEEEEEcccC
Q 018784          234 SLEPKLGNIFIAGGED-----MWVHVFDFHTG  260 (350)
Q Consensus       234 ~~~~~~~~~l~sg~~d-----~~i~v~d~~~~  260 (350)
                      .....++++++.|+.+     ..+.+||+.+.
T Consensus       248 ~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  279 (301)
T 2vpj_A          248 GATVLRGRLYAIAGYDGNSLLSSIECYDPIID  279 (301)
T ss_dssp             EEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred             eEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence            2222246788888865     35778887654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.86  E-value=0.012  Score=51.52  Aligned_cols=267  Identities=11%  Similarity=0.063  Sum_probs=137.4

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC-ceeee-c--cCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-DWIGT-F--EGHKGAVWSCCLDANALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~-~~~~~-l--~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      ...+.+|.|.+   ++..++.| .++.+. +....| .+... +  ......+..+.+.+ +..++. +.++.|..-. .
T Consensus        35 ~~~~~~v~~~~---~~~~~~~G-~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~-g~~g~i~~S~-D  106 (327)
T 2xbg_A           35 TATILDMSFID---RHHGWLVG-VNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIV-GEPPIMLHTT-D  106 (327)
T ss_dssp             SSCEEEEEESS---SSCEEEEE-TTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEE-EETTEEEEES-S
T ss_pred             CCcEEEEEECC---CCcEEEEc-CCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEE-ECCCeEEEEC-C
Confidence            45788998864   56666754 556542 222222 22221 1  12344678888876 444443 5566554421 1


Q ss_pred             CCCeeeee----eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC
Q 018784           92 TGDEKHSF----EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (350)
Q Consensus        92 ~~~~~~~~----~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d  167 (350)
                      .++.-...    .++..+..+.+.+++..++++...+..+..|-  +..-..........+..+++.++ +.+++.+...
T Consensus       107 gG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~Dg--G~tW~~~~~~~~~~~~~~~~~~~-~~~~~~g~~G  183 (327)
T 2xbg_A          107 GGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKDS--GKNWQALVQEAIGVMRNLNRSPS-GEYVAVSSRG  183 (327)
T ss_dssp             TTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESST--TSSEEEEECSCCCCEEEEEECTT-SCEEEEETTS
T ss_pred             CCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcCC--CCCCEEeecCCCcceEEEEEcCC-CcEEEEECCC
Confidence            22221111    12345777887777776665543333344332  11111122233456778887764 5566555443


Q ss_pred             CeEEEEEC--CCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecC---CC--CceeEecCCCC
Q 018784          168 GGVRLWDA--RSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP---CN--TESASLEPKLG  240 (350)
Q Consensus       168 g~i~iwd~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~---~~--~~~~~~~~~~~  240 (350)
                      +..+-+|-  .+-+.+. ......+..+.+.+++++++.+.++.+++.+...+..-.....+   ..  ...+.+.+ .+
T Consensus       184 ~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~  261 (327)
T 2xbg_A          184 SFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-PN  261 (327)
T ss_dssp             SEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-SS
T ss_pred             cEEEEeCCCCCceeECC-CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-CC
Confidence            33444442  2222321 22345678888999999888888888777642212221112211   11  12233333 35


Q ss_pred             cEEEEecCCCeEEEEEcccCeeEEeec---CCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          241 NIFIAGGEDMWVHVFDFHTGEQIGCNK---GHHGPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       241 ~~l~sg~~d~~i~v~d~~~~~~~~~~~---~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      .+++++. ++.| ++..+.|+.-..+.   .+...++++.|.+++. ++.++.+|.|.-++
T Consensus       262 ~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          262 EVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             CEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             EEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence            6666655 5655 34444454433332   2345678899976555 55667788877765

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.81  E-value=0.00051  Score=66.96  Aligned_cols=204  Identities=13%  Similarity=-0.059  Sum_probs=116.0

Q ss_pred             eeEEEecccCCCccEEEEEeCCCCeeEeeCCC----CceeeeccCccCCeEEEEECC-CCcEEEEeeCCCeEEEeeCCCC
Q 018784           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGET----GDWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALTG   93 (350)
Q Consensus        19 v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~----~~~~~~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~~   93 (350)
                      +.+++|++  .++.+..+-...+.|+.+++..    ......+.........+++.+ .+.++++-...+.|.+.++...
T Consensus       408 p~gla~d~--~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          408 VVALDTEV--ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             CCCCEEET--TTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             eEEEcccc--ccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            44666664  1344555555667788877654    222222221112234567774 4556666566789999998655


Q ss_pred             Ceeeeeec-cccEeEEEEcCCCCeEEEeeC--CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784           94 DEKHSFEH-KHIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (350)
Q Consensus        94 ~~~~~~~h-~~~V~~~~~~~~~~~l~sg~~--d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i  170 (350)
                      .....+.. -.....+++.|.+.+|+....  .+.|.++++.... ........-.....+++.+.+++++++-+..+.|
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I  564 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  564 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeE
Confidence            43333322 244678899996655554432  2678777775322 2222222233456788887778888887778899


Q ss_pred             EEEECCCCceeEeecC---CCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeee
Q 018784          171 RLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYN  225 (350)
Q Consensus       171 ~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~  225 (350)
                      ..+|+........+..   ......+++..+..|++....+.|..+|..+++.+..+.
T Consensus       565 ~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          565 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             EEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             EEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEee
Confidence            9999864333222221   122334556555333333345789999987776655543

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.78  E-value=0.03  Score=53.68  Aligned_cols=224  Identities=7%  Similarity=-0.080  Sum_probs=137.6

Q ss_pred             CcEEEEeeCCCeEEEeeCCCCCeeeeee--ccccEeEEEEcCCCCeEE-EeeCCCeEEEEECCCCCCCCeeecCCCCcEE
Q 018784           73 ALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRACAFSEDTHLLL-TGGFEKILRIFDLNRPDAPPREVGNSSGSIR  149 (350)
Q Consensus        73 ~~~l~s~s~Dg~v~vWd~~~~~~~~~~~--h~~~V~~~~~~~~~~~l~-sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~  149 (350)
                      .-++++  ....|+.-++.+......+.  .-..+..++|++.+..|+ +-..++.|..+++..... ............
T Consensus         7 ~~Ll~s--~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g~~~P~   83 (628)
T 4a0p_A            7 AFLLFS--RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFGLDYPE   83 (628)
T ss_dssp             CEEEEE--ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCC
T ss_pred             cEEEEE--eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCCCCCcc
Confidence            334443  56788888887654333332  334678999998665555 555678899998864322 222222223456


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEee-cCCCCeEEEEEec-CCcEEEEEc--CCcEEEEECCCcceeeeee
Q 018784          150 TVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-ETKSPVTSAEVSR-DGRYITTAD--GSSVKFWDANHFGLVKGYN  225 (350)
Q Consensus       150 ~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~--~~~i~vwd~~~~~~~~~~~  225 (350)
                      .+++...++.++.+-...+.|.+.++........+ ..-.....+++.| +|.++.+..  ...|...++..........
T Consensus        84 GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~  163 (628)
T 4a0p_A           84 GMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP  163 (628)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred             eEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC
Confidence            67776667778887777789999998654332222 2334568899998 455555542  3567777775433221112


Q ss_pred             cCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784          226 MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       226 ~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~  301 (350)
                      .-..+..+.+.+..+.++++-...+.|..+|+..... ..+.........|++.. +.++++-...+.|...|...
T Consensus       164 ~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~t  237 (628)
T 4a0p_A          164 NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTS  237 (628)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred             CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCC
Confidence            1123445667766678888888888999999865433 22322333456787765 55666766678888877543

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.74  E-value=0.00069  Score=66.00  Aligned_cols=218  Identities=9%  Similarity=-0.030  Sum_probs=124.4

Q ss_pred             CCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEe-eCCCeEEEEECCCC---CCCCeeecCCCCcEEEEEEeCCC
Q 018784           82 DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG-GFEKILRIFDLNRP---DAPPREVGNSSGSIRTVAWLHSD  157 (350)
Q Consensus        82 Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg-~~d~~v~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~  157 (350)
                      ...|++.++.+......+.....+..++|.+.+..|+.. ...+.|+.+++...   ................+++...+
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~  464 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH  464 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred             ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence            457777787665544444444457788999876666554 45678999998641   11111111111223455655456


Q ss_pred             CcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcE-EEEEc--CCcEEEEECCCcceeeeeec-CCCCce
Q 018784          158 QTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRY-ITTAD--GSSVKFWDANHFGLVKGYNM-PCNTES  232 (350)
Q Consensus       158 ~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~-l~~~~--~~~i~vwd~~~~~~~~~~~~-~~~~~~  232 (350)
                      +.++++-...+.|.+.++........+.. ......++++|.+.+ +.+..  .+.|..+++........... -..+..
T Consensus       465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnG  544 (699)
T 1n7d_A          465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNG  544 (699)
T ss_dssp             SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCC
T ss_pred             CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccE
Confidence            66777666678899999875543333332 234567888886543 33332  25677777643221111111 122445


Q ss_pred             eEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec--CCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK--GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       233 ~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~--~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      +.+.+..+.++++-+..+.|..+++........+.  ........|++..+ .++++-...+.|..++..
T Consensus       545 lavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~  613 (699)
T 1n7d_A          545 ITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRL  613 (699)
T ss_dssp             EEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETT
T ss_pred             EEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEcc
Confidence            67777667888888888999999986433222222  11223345566444 566676777888888753

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.67  E-value=0.0048  Score=53.20  Aligned_cols=225  Identities=14%  Similarity=0.162  Sum_probs=106.9

Q ss_pred             CccEEEEEeCC----CCeeEeeCCCCceeee--ccCccCCeEEEEECCCCcEEEEeeCCC-----eEEEeeCCCCCeeee
Q 018784           30 DGFFLVSASKD----SSPMLRNGETGDWIGT--FEGHKGAVWSCCLDANALFSASGSADF-----TAKLWDALTGDEKHS   98 (350)
Q Consensus        30 dg~~lasgs~d----~~v~iw~~~~~~~~~~--l~gH~~~V~~v~~~~~~~~l~s~s~Dg-----~v~vWd~~~~~~~~~   98 (350)
                      ++.+++.|+.+    ..+.++|..+.++...  +......-.++.+  ++.+++.||.++     .+.++|..+.+-...
T Consensus        15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~   92 (302)
T 2xn4_A           15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV   92 (302)
T ss_dssp             CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred             CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence            34566666643    3467888887776432  2211111112222  566777777553     577888766542211


Q ss_pred             --eeccccEeEEEEcCCCCeEEEeeCCC-----eEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC----
Q 018784           99 --FEHKHIVRACAFSEDTHLLLTGGFEK-----ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS----  167 (350)
Q Consensus        99 --~~h~~~V~~~~~~~~~~~l~sg~~d~-----~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d----  167 (350)
                        +.....-.+++. .++.+++.|+.++     .+.+||+.+..............-.+++..  ++.+++.|+.+    
T Consensus        93 ~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  169 (302)
T 2xn4_A           93 ANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASR  169 (302)
T ss_dssp             CCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTT
T ss_pred             CCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCC
Confidence              111111112222 2566777777553     477888764321110000000001112222  45566555432    


Q ss_pred             ---CeEEEEECCCCceeE--eecCCCCeEEEEEecCCcEEEEE-cC-----CcEEEEECCCcceeeeeecCCCCceeEec
Q 018784          168 ---GGVRLWDARSGKIVQ--TLETKSPVTSAEVSRDGRYITTA-DG-----SSVKFWDANHFGLVKGYNMPCNTESASLE  236 (350)
Q Consensus       168 ---g~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~-~~-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  236 (350)
                         ..+.+||+.+.+=..  .+.....-.++... ++++++.+ .+     ..+.+||+.+..-.....++.........
T Consensus       170 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~  248 (302)
T 2xn4_A          170 QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC  248 (302)
T ss_dssp             EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred             ccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE
Confidence               358899988764222  12211111222222 45555543 22     36889998875543322222222211122


Q ss_pred             CCCCcEEEEecCCC-----eEEEEEcccC
Q 018784          237 PKLGNIFIAGGEDM-----WVHVFDFHTG  260 (350)
Q Consensus       237 ~~~~~~l~sg~~d~-----~i~v~d~~~~  260 (350)
                      ...+.+++.|+.++     .+.+||+.+.
T Consensus       249 ~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          249 AVNGLLYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             EETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred             EECCEEEEECCcCCCcccccEEEEcCCCC
Confidence            22467888888653     4777877654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.64  E-value=0.033  Score=53.35  Aligned_cols=221  Identities=10%  Similarity=0.003  Sum_probs=126.2

Q ss_pred             CCCeEEEeeCCCCC--eeeeeeccccEeEEEEcCCCCeEEEe-eCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCC
Q 018784           81 ADFTAKLWDALTGD--EKHSFEHKHIVRACAFSEDTHLLLTG-GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD  157 (350)
Q Consensus        81 ~Dg~v~vWd~~~~~--~~~~~~h~~~V~~~~~~~~~~~l~sg-~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~  157 (350)
                      ....|++-++....  .......-..+..++|++.+..|+-+ ...+.|..+++...................+++...+
T Consensus        16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~   95 (619)
T 3s94_A           16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   95 (619)
T ss_dssp             CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred             ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence            35677887776542  22222334557899999866666544 4467888888864322122222233567888887767


Q ss_pred             CcEEEEEeCCCeEEEEECCCCceeEee-cCCCCeEEEEEecC-CcEEEEEc--CCcEEEEECCCcceeeeee-cCCCCce
Q 018784          158 QTILSSCTDSGGVRLWDARSGKIVQTL-ETKSPVTSAEVSRD-GRYITTAD--GSSVKFWDANHFGLVKGYN-MPCNTES  232 (350)
Q Consensus       158 ~~~~~s~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~~~~--~~~i~vwd~~~~~~~~~~~-~~~~~~~  232 (350)
                      +.++++-...+.|.+.++........+ ..-.....+++.|. |.++.+..  ...|...++.......... .-..+..
T Consensus        96 ~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~G  175 (619)
T 3s94_A           96 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNG  175 (619)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcE
Confidence            888888888899999998754332222 22334567889986 55555543  3466666665322211111 1123445


Q ss_pred             eEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCC
Q 018784          233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPP  302 (350)
Q Consensus       233 ~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~  302 (350)
                      +.+.+..++++++-...+.|..+|+..........+.......|++.++ .++++-...+.|...|....
T Consensus       176 lald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg  244 (619)
T 3s94_A          176 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTG  244 (619)
T ss_dssp             EEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSC
T ss_pred             EEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCC
Confidence            6677666788888888888999998654332222212222356677655 56666666778888776443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.63  E-value=0.0094  Score=51.44  Aligned_cols=224  Identities=8%  Similarity=0.048  Sum_probs=109.1

Q ss_pred             ccEEEEEeC--CCCeeEeeCCCCceeee--ccCccCCeEEEEECCCCcEEEEeeCC----CeEEEeeCCCCCeeee--ee
Q 018784           31 GFFLVSASK--DSSPMLRNGETGDWIGT--FEGHKGAVWSCCLDANALFSASGSAD----FTAKLWDALTGDEKHS--FE  100 (350)
Q Consensus        31 g~~lasgs~--d~~v~iw~~~~~~~~~~--l~gH~~~V~~v~~~~~~~~l~s~s~D----g~v~vWd~~~~~~~~~--~~  100 (350)
                      +.+++.|+.  ...+.+||..+.++...  +......-.++.  .++.+++-||.+    ..+.++|+.+..-...  +.
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            345566654  35678899888777532  211111111222  356677777755    6678888876642221  11


Q ss_pred             ccccEeEEEEcCCCCeEEEeeCC------CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeC--------
Q 018784          101 HKHIVRACAFSEDTHLLLTGGFE------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD--------  166 (350)
Q Consensus       101 h~~~V~~~~~~~~~~~l~sg~~d------~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~--------  166 (350)
                      ....-.++. ..++++++.|+.+      ..+.+||+.+..............-.+++..  ++.+++.|+.        
T Consensus        90 ~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~  166 (306)
T 3ii7_A           90 TPRDSLAAC-AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGR  166 (306)
T ss_dssp             SCCBSCEEE-EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCE
T ss_pred             ccccceeEE-EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCccc
Confidence            111111111 2256677777765      4588888765321110000000001111222  4456555542        


Q ss_pred             -CCeEEEEECCCCceeE--eecCCCCeEEEEEecCCcEEEEEc------CCcEEEEECCCcceeeeeecCCCCceeEecC
Q 018784          167 -SGGVRLWDARSGKIVQ--TLETKSPVTSAEVSRDGRYITTAD------GSSVKFWDANHFGLVKGYNMPCNTESASLEP  237 (350)
Q Consensus       167 -dg~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~------~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  237 (350)
                       -..+.+||+.+.+=..  .+.....-..+... ++++++.+.      -..+.+||+.+..-...-.++..........
T Consensus       167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~  245 (306)
T 3ii7_A          167 VLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA  245 (306)
T ss_dssp             ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE
T ss_pred             ccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE
Confidence             2458899998764221  11111111122222 555555432      1468899987754333222332222112122


Q ss_pred             CCCcEEEEecCC-----CeEEEEEcccC
Q 018784          238 KLGNIFIAGGED-----MWVHVFDFHTG  260 (350)
Q Consensus       238 ~~~~~l~sg~~d-----~~i~v~d~~~~  260 (350)
                      ..+.+++.|+.+     ..+.+||+.+.
T Consensus       246 ~~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          246 VGSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             ETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             ECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            246788888854     46788887654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.61  E-value=0.086  Score=54.21  Aligned_cols=280  Identities=12%  Similarity=0.053  Sum_probs=150.2

Q ss_pred             CCceeEEEecccCC---CccEEEEEeC-CCCeeEeeCCCCceeee--ccCccCCeEEEEEC--CCCcEEEEeeCCCeEEE
Q 018784           16 SRPVVDLFYSPITP---DGFFLVSASK-DSSPMLRNGETGDWIGT--FEGHKGAVWSCCLD--ANALFSASGSADFTAKL   87 (350)
Q Consensus        16 ~~~v~~~~~~~~s~---dg~~lasgs~-d~~v~iw~~~~~~~~~~--l~gH~~~V~~v~~~--~~~~~l~s~s~Dg~v~v   87 (350)
                      ...|.|+++.|...   .+.++|.|.+ |++++|+++.+.+.+..  +.+. ....++++.  ....+|..|-.||.+.-
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~~~L~igl~dG~l~~  631 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESSHYLLCALGDGALFY  631 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCCcEEEEEeCCCeEEE
Confidence            45789998876432   2579999997 99999999987666542  3221 122333321  23467788889999765


Q ss_pred             eeC--CCCCeee---eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEE-EEEeCCC-CcE
Q 018784           88 WDA--LTGDEKH---SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRT-VAWLHSD-QTI  160 (350)
Q Consensus        88 Wd~--~~~~~~~---~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~-~~~  160 (350)
                      +.+  .++....   .+-...++.-..|...+..-+-+..++...++--. +.  .....-.-..+.. ..|.... ..-
T Consensus       632 ~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~--l~~s~l~~~~v~~~~~F~se~~~~g  708 (1158)
T 3ei3_A          632 FGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HK--LVFSNVNLKEVNYMCPLNSDGYPDS  708 (1158)
T ss_dssp             EEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESS-SS--EEEEEBSSSCCCEEEEECCSSSTTE
T ss_pred             EEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcC-Cc--eEEeccChHHhceEeccCcccCCCc
Confidence            543  3443221   11123344444444433322223334454555322 11  1111111112222 3333221 122


Q ss_pred             EEEEeCCCeEEEEECCCCc--eeEeecCCCCeEEEEEecCCcEEEE--Ec------------------------------
Q 018784          161 LSSCTDSGGVRLWDARSGK--IVQTLETKSPVTSAEVSRDGRYITT--AD------------------------------  206 (350)
Q Consensus       161 ~~s~~~dg~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~--~~------------------------------  206 (350)
                      ++.. .+++++|..+..-+  .+..+.....+..++++|+.+.++.  +.                              
T Consensus       709 ~v~~-~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (1158)
T 3ei3_A          709 LALA-NNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSK  787 (1158)
T ss_dssp             EEEE-CSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCC
T ss_pred             EEEE-cCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccc
Confidence            3322 34568888764332  3334444455666666665443221  10                              


Q ss_pred             ------------------CCcEEEEECCCcceeeeeecCCCCceeE-----ecCCCCcEEEEec----------CCCeEE
Q 018784          207 ------------------GSSVKFWDANHFGLVKGYNMPCNTESAS-----LEPKLGNIFIAGG----------EDMWVH  253 (350)
Q Consensus       207 ------------------~~~i~vwd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~sg~----------~d~~i~  253 (350)
                                        ...|++.|..++..+..+.+..+....+     +......++++|+          ..|.|+
T Consensus       788 ~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~  867 (1158)
T 3ei3_A          788 LFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIV  867 (1158)
T ss_dssp             CC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEE
T ss_pred             cccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEE
Confidence                              1247888888888877777765543222     2222347888887          357899


Q ss_pred             EEEcccCeeEEee-cCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCC
Q 018784          254 VFDFHTGEQIGCN-KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPN  303 (350)
Q Consensus       254 v~d~~~~~~~~~~-~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~  303 (350)
                      +|++..++..... ....++|++++-- +|.++++-+  ..|++|++...+
T Consensus       868 vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~ig--~~l~vy~l~~~~  915 (1158)
T 3ei3_A          868 VFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASIN--STVRLYEWTTEK  915 (1158)
T ss_dssp             EEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEET--TEEEEEEECTTS
T ss_pred             EEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEcC--CEEEEEECCCCc
Confidence            9999755432211 2346789988744 455555443  689999986544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.58  E-value=0.0069  Score=56.02  Aligned_cols=154  Identities=13%  Similarity=0.122  Sum_probs=98.3

Q ss_pred             cEEEEEEeCC-CCcEEEEEeCCCeEEEEECCCCceeEeecCC----CCeEEEEE-------ecCCcEE-EEEcCC-----
Q 018784          147 SIRTVAWLHS-DQTILSSCTDSGGVRLWDARSGKIVQTLETK----SPVTSAEV-------SRDGRYI-TTADGS-----  208 (350)
Q Consensus       147 ~v~~~~~~~~-~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~----~~v~~~~~-------~~~~~~l-~~~~~~-----  208 (350)
                      ....+++.|. ++.++++....+.|++.|+.++.....+...    .....++|       ++++..| ++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            4667888763 5566666555567999999887765544332    24788999       9999844 444332     


Q ss_pred             --cEEEEECCC-ccee-----eeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcc-------cCee-----------
Q 018784          209 --SVKFWDANH-FGLV-----KGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH-------TGEQ-----------  262 (350)
Q Consensus       209 --~i~vwd~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~-------~~~~-----------  262 (350)
                        .|.+++... +...     +.+..-..+..+.+.+..+.++++-..++.|+.+|+.       ++..           
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence              266665333 1111     1111112344556777678889899899999999997       4543           


Q ss_pred             EEe-e-cCCCcCEEEEEEcCCCC-EEEEecCCCcEEEecCC
Q 018784          263 IGC-N-KGHHGPVHCVRFSPGGE-SYASGSEDGTIRIWQTN  300 (350)
Q Consensus       263 ~~~-~-~~h~~~v~~l~~sp~~~-~lasgs~Dg~v~vw~~~  300 (350)
                      ... + .+...+.+.|+|+|+++ ++++=+...+|+.++.+
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence            111 1 12334568999999999 46666778899987654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.58  E-value=0.012  Score=50.62  Aligned_cols=211  Identities=16%  Similarity=0.163  Sum_probs=100.7

Q ss_pred             CeEEEeeCCCCCeeee--eeccccEeEEEEcCCCCeEEEeeCC-----CeEEEEECCCCCCC-CeeecC--CCCcEEEEE
Q 018784           83 FTAKLWDALTGDEKHS--FEHKHIVRACAFSEDTHLLLTGGFE-----KILRIFDLNRPDAP-PREVGN--SSGSIRTVA  152 (350)
Q Consensus        83 g~v~vWd~~~~~~~~~--~~h~~~V~~~~~~~~~~~l~sg~~d-----~~v~vwd~~~~~~~-~~~~~~--~~~~v~~~~  152 (350)
                      ..+.++|+.+.+-...  +.....-.++. ..++.+++.|+.+     ..+.+||+.+.... ......  ....-.+++
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~  109 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT  109 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE
Confidence            3577778766542111  11111111222 2356677777755     45888998765410 111111  110111122


Q ss_pred             EeCCCCcEEEEEeCC-----CeEEEEECCCCce--eEeecCCCCeEEEEEecCCcEEEEE-c-----CCcEEEEECCCcc
Q 018784          153 WLHSDQTILSSCTDS-----GGVRLWDARSGKI--VQTLETKSPVTSAEVSRDGRYITTA-D-----GSSVKFWDANHFG  219 (350)
Q Consensus       153 ~~~~~~~~~~s~~~d-----g~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~-~-----~~~i~vwd~~~~~  219 (350)
                      ..  ++.+++.|+.+     ..+.++|+.+.+-  +..+.....-.++.. .++++++.+ .     -..+.+||+.+..
T Consensus       110 ~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~  186 (301)
T 2vpj_A          110 TL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGH  186 (301)
T ss_dssp             EE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred             EE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCc
Confidence            22  45666666543     3688999877642  222222111112222 256655543 2     2468899987765


Q ss_pred             eeeeeecCCCCceeEecCCCCcEEEEecCC-----CeEEEEEcccCee--EEeecCCCcCEEEEEEcCCCCEEEEecCCC
Q 018784          220 LVKGYNMPCNTESASLEPKLGNIFIAGGED-----MWVHVFDFHTGEQ--IGCNKGHHGPVHCVRFSPGGESYASGSEDG  292 (350)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-----~~i~v~d~~~~~~--~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg  292 (350)
                      -...-.++...........++.+++.|+.+     ..+.+||+.+.+=  +..+.........+.+  ++++++.|+.++
T Consensus       187 W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~  264 (301)
T 2vpj_A          187 WTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDG  264 (301)
T ss_dssp             EEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred             EEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCC
Confidence            433222332222222222246888888864     4688999876542  2222111111122222  567777777653


Q ss_pred             -----cEEEecC
Q 018784          293 -----TIRIWQT  299 (350)
Q Consensus       293 -----~v~vw~~  299 (350)
                           .|.+||.
T Consensus       265 ~~~~~~v~~yd~  276 (301)
T 2vpj_A          265 NSLLSSIECYDP  276 (301)
T ss_dssp             SSBEEEEEEEET
T ss_pred             CcccccEEEEcC
Confidence                 4555654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.52  E-value=0.026  Score=49.97  Aligned_cols=218  Identities=10%  Similarity=0.097  Sum_probs=112.0

Q ss_pred             eEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee--eee----ccccEeEEEEcCC---CCeEEEeeC-C-----CeEEE
Q 018784           64 VWSCCLDANALFSASGSADFTAKLWDALTGDEKH--SFE----HKHIVRACAFSED---THLLLTGGF-E-----KILRI  128 (350)
Q Consensus        64 V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~--~~~----h~~~V~~~~~~~~---~~~l~sg~~-d-----~~v~v  128 (350)
                      -+.+++.+++.++++ ..+|.|++++  .+....  .+.    .......++|+|+   +..|+.+.. .     ..|..
T Consensus        33 P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r  109 (352)
T 2ism_A           33 PWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR  109 (352)
T ss_dssp             EEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence            468899999997776 4569999998  333211  111    2346789999998   555544433 2     56777


Q ss_pred             EECCCCCC-----CCeeec---CCCCcEEEEEEeCCCCcEEEEEeCC-------------CeEEEEECCCC---------
Q 018784          129 FDLNRPDA-----PPREVG---NSSGSIRTVAWLHSDQTILSSCTDS-------------GGVRLWDARSG---------  178 (350)
Q Consensus       129 wd~~~~~~-----~~~~~~---~~~~~v~~~~~~~~~~~~~~s~~~d-------------g~i~iwd~~~~---------  178 (350)
                      |++.....     ......   ........++|.++ +.++++-++.             ++|.-++....         
T Consensus       110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pd-G~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~  188 (352)
T 2ism_A          110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPD-GMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG  188 (352)
T ss_dssp             EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTT-SCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred             EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCC-CCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence            77653211     001011   10112246777664 4566554321             45655655420         


Q ss_pred             -----ceeEeecCCCCeEEEEEec-CCcEEEEEcCC-c--------EEEEECCC-cc---------------eeeeeecC
Q 018784          179 -----KIVQTLETKSPVTSAEVSR-DGRYITTADGS-S--------VKFWDANH-FG---------------LVKGYNMP  227 (350)
Q Consensus       179 -----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~-~--------i~vwd~~~-~~---------------~~~~~~~~  227 (350)
                           ..+... .......++|+| ++.++++-.+. .        |.+..... +.               ++..+...
T Consensus       189 ~~~~~~~i~a~-G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~  267 (352)
T 2ism_A          189 RRGARPEVYSL-GHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQG  267 (352)
T ss_dssp             CTTSCTTEEEE-CCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC
T ss_pred             CCCCCccEEEE-cCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCC
Confidence                 011111 112245678898 67776654322 2        33332211 00               00011000


Q ss_pred             CCCceeEecCCCCcEEEEecCCCeEEEEEcccCee------EEeecCCCcCEEEEEEcCCCCEEEEe
Q 018784          228 CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ------IGCNKGHHGPVHCVRFSPGGESYASG  288 (350)
Q Consensus       228 ~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~------~~~~~~h~~~v~~l~~sp~~~~lasg  288 (350)
                      ..+..+.+  ..+.++++....+.|...++.....      ...+..-...+..+++.|||.++++.
T Consensus       268 ~ap~G~~~--~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~  332 (352)
T 2ism_A          268 FPPGNLAF--FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT  332 (352)
T ss_dssp             CCEEEEEE--ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred             CCCcceEE--ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence            11112223  2467777777778888888764321      11221223568999999999876654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.48  E-value=0.011  Score=51.09  Aligned_cols=224  Identities=14%  Similarity=0.159  Sum_probs=107.1

Q ss_pred             CccEEEEEeCC----CCeeEeeCCCCceeee--ccCccCCeEEEEECCCCcEEEEeeC----C-----CeEEEeeCCCCC
Q 018784           30 DGFFLVSASKD----SSPMLRNGETGDWIGT--FEGHKGAVWSCCLDANALFSASGSA----D-----FTAKLWDALTGD   94 (350)
Q Consensus        30 dg~~lasgs~d----~~v~iw~~~~~~~~~~--l~gH~~~V~~v~~~~~~~~l~s~s~----D-----g~v~vWd~~~~~   94 (350)
                      ++.+++.|+.+    ..+.++|..+.++...  +..-...- +++. .++.+++-||.    +     ..+.++|+.+..
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~  101 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ  101 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence            56677777642    3577899888777542  11111111 1222 25666666665    3     457788876654


Q ss_pred             eeee--eeccccEeEEEEcCCCCeEEEeeCC-----CeEEEEECCCCCCCCe-eecCCCCcEEEEEEeCCCCcEEEEEeC
Q 018784           95 EKHS--FEHKHIVRACAFSEDTHLLLTGGFE-----KILRIFDLNRPDAPPR-EVGNSSGSIRTVAWLHSDQTILSSCTD  166 (350)
Q Consensus        95 ~~~~--~~h~~~V~~~~~~~~~~~l~sg~~d-----~~v~vwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~s~~~  166 (350)
                      -...  +.....-.+++. -++++++.|+.+     ..+.+||+.+.+.... ........- +++..  ++.+++.|+.
T Consensus       102 W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~  177 (308)
T 1zgk_A          102 WSPCAPMSVPRNRIGVGV-IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV-GVAVL--NRLLYAVGGF  177 (308)
T ss_dssp             EEECCCCSSCCBTCEEEE-ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEECCB
T ss_pred             EeECCCCCcCccccEEEE-ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce-EEEEE--CCEEEEEeCC
Confidence            2211  111111111111 256677777643     3577888764321100 000001111 12222  4566666654


Q ss_pred             C-----CeEEEEECCCCceeE--eecCCCCeEEEEEecCCcEEEEE-cC-----CcEEEEECCCcceeeeeecCCCCcee
Q 018784          167 S-----GGVRLWDARSGKIVQ--TLETKSPVTSAEVSRDGRYITTA-DG-----SSVKFWDANHFGLVKGYNMPCNTESA  233 (350)
Q Consensus       167 d-----g~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~-~~-----~~i~vwd~~~~~~~~~~~~~~~~~~~  233 (350)
                      +     ..+.++|+.+.+=..  .+.....-.++... ++++++.+ .+     ..+.+||+.+..-.....++......
T Consensus       178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~  256 (308)
T 1zgk_A          178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL  256 (308)
T ss_dssp             CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSC
T ss_pred             CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccce
Confidence            3     458899987764221  11111111222223 55555443 22     46899998876543322333222211


Q ss_pred             EecCCCCcEEEEecCC-----CeEEEEEcccC
Q 018784          234 SLEPKLGNIFIAGGED-----MWVHVFDFHTG  260 (350)
Q Consensus       234 ~~~~~~~~~l~sg~~d-----~~i~v~d~~~~  260 (350)
                      ......+++++.|+.+     ..+.+||+.+.
T Consensus       257 ~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          257 GITVHQGRIYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             EEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             EEEEECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence            1112246788888754     34667776553

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.38  E-value=0.026  Score=48.86  Aligned_cols=210  Identities=13%  Similarity=0.107  Sum_probs=98.1

Q ss_pred             EEEEEeCCCCeeEeeCCCCceee-eccCccCCeEEEEECCCCcEEEEeeC----C-------CeEEEeeCCCCCeeee--
Q 018784           33 FLVSASKDSSPMLRNGETGDWIG-TFEGHKGAVWSCCLDANALFSASGSA----D-------FTAKLWDALTGDEKHS--   98 (350)
Q Consensus        33 ~lasgs~d~~v~iw~~~~~~~~~-~l~gH~~~V~~v~~~~~~~~l~s~s~----D-------g~v~vWd~~~~~~~~~--   98 (350)
                      +++.|+  ..+.+||..+.++.. .+..........+...++.+++.||.    +       ..+.++|..+.+-...  
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   84 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP   84 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence            445555  568899999888753 22222233333334456677666663    1       1266778766542111  


Q ss_pred             eeccccEeEEEEcCCCCeEEEeeCC--------CeEEEEECCCCCCCCee-ecCCCCcEEEEEEeCCCCcEEEEEeC-C-
Q 018784           99 FEHKHIVRACAFSEDTHLLLTGGFE--------KILRIFDLNRPDAPPRE-VGNSSGSIRTVAWLHSDQTILSSCTD-S-  167 (350)
Q Consensus        99 ~~h~~~V~~~~~~~~~~~l~sg~~d--------~~v~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~s~~~-d-  167 (350)
                      +.....-.+++. -++.+++.|+.+        ..+.+||+.+.+..... ........ +++..  ++.+++.|+. + 
T Consensus        85 ~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~  160 (315)
T 4asc_A           85 LPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGH-TVLSH--MDLVYVIGGKGSD  160 (315)
T ss_dssp             BSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEECCBCTT
T ss_pred             CCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccce-eEEEE--CCEEEEEeCCCCC
Confidence            111111111211 256666677642        45788888653211000 00001111 12222  4456666654 2 


Q ss_pred             ----CeEEEEECCCCce--eEeecCCCCeEEEEEecCCcEEE-EEcC-----CcEEEEECCCcceeeeeecCCCCceeEe
Q 018784          168 ----GGVRLWDARSGKI--VQTLETKSPVTSAEVSRDGRYIT-TADG-----SSVKFWDANHFGLVKGYNMPCNTESASL  235 (350)
Q Consensus       168 ----g~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~-~~~~-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~  235 (350)
                          ..+.++|+.+.+=  +..+.....-..+... ++++++ .+.+     ..+.+||+.+..-...-.++........
T Consensus       161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  239 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSL  239 (315)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             CcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeE
Confidence                4689999887642  1111111111222223 455544 4432     2578899877644332223322222222


Q ss_pred             cCCCCcEEEEecCC
Q 018784          236 EPKLGNIFIAGGED  249 (350)
Q Consensus       236 ~~~~~~~l~sg~~d  249 (350)
                      ....+++++.|+.+
T Consensus       240 ~~~~~~l~v~GG~~  253 (315)
T 4asc_A          240 VSLVGTLYAIGGFA  253 (315)
T ss_dssp             EEETTEEEEEEEEE
T ss_pred             EEECCEEEEECCcc
Confidence            22246778877753

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.36  E-value=0.11  Score=49.66  Aligned_cols=157  Identities=6%  Similarity=-0.090  Sum_probs=93.4

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc-eeeeccCccCCeEEEEECCC-CcEEEEeeCCCeEEEeeCCCCCe
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-WIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALTGDE   95 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~-~~~~l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~vWd~~~~~~   95 (350)
                      ...+++|++  .++.+..+-...+.|..++..... ....+..-......++++.. +.+.++-...+.|.+.++.....
T Consensus        41 ~~~~ld~~~--~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           41 DAAAVDFVF--SHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             CEEEEEEET--TTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             ceEEEEEEe--CCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence            456788876  245555555556677777765432 12233332345678899874 55666667779999999865443


Q ss_pred             eeee-eccccEeEEEEcCCCCeEEEeeC--CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEE
Q 018784           96 KHSF-EHKHIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (350)
Q Consensus        96 ~~~~-~h~~~V~~~~~~~~~~~l~sg~~--d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i  172 (350)
                      ...+ ..-...+.+++.|.+..|+-...  ...|...+++. ..........-.....+++.+.+++++++-...+.|..
T Consensus       119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG-~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~  197 (619)
T 3s94_A          119 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK  197 (619)
T ss_dssp             EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCC-CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEE
Confidence            3333 23345789999997555544433  45677777653 22222222234456778877767777776666677777


Q ss_pred             EECCC
Q 018784          173 WDARS  177 (350)
Q Consensus       173 wd~~~  177 (350)
                      .|+..
T Consensus       198 ~~~dG  202 (619)
T 3s94_A          198 SNLDG  202 (619)
T ss_dssp             ESSSC
T ss_pred             ecCCC
Confidence            77754

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.36  E-value=0.027  Score=48.35  Aligned_cols=184  Identities=17%  Similarity=0.198  Sum_probs=88.9

Q ss_pred             CCCeEEEeeCC-----CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC-----CeEEEEECCCCceeE
Q 018784          113 DTHLLLTGGFE-----KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-----GGVRLWDARSGKIVQ  182 (350)
Q Consensus       113 ~~~~l~sg~~d-----~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-----g~i~iwd~~~~~~~~  182 (350)
                      ++.+++.|+.+     ..+.+||+.+.+............-.+++..  ++.+++.|+.+     ..+.+||+.+.+-..
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            56677777754     3578888764321110000000001112222  45566656544     257888987764222


Q ss_pred             e--ecCCCCeEEEEEecCCcEEEEE-c-------CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCC---
Q 018784          183 T--LETKSPVTSAEVSRDGRYITTA-D-------GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED---  249 (350)
Q Consensus       183 ~--~~~~~~v~~~~~~~~~~~l~~~-~-------~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d---  249 (350)
                      .  +.....-.+++. -++++++.+ .       -..+.+||+.+..-...-.++............+.+++.|+.+   
T Consensus       139 ~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~  217 (302)
T 2xn4_A          139 VAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPL  217 (302)
T ss_dssp             ECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSS
T ss_pred             cCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCc
Confidence            1  111111112222 345555443 1       2358889987755433222332222222222247888898865   


Q ss_pred             --CeEEEEEcccCe--eEEeecCCCcCEEEEEEcCCCCEEEEecCCC-----cEEEecCCC
Q 018784          250 --MWVHVFDFHTGE--QIGCNKGHHGPVHCVRFSPGGESYASGSEDG-----TIRIWQTNP  301 (350)
Q Consensus       250 --~~i~v~d~~~~~--~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg-----~v~vw~~~~  301 (350)
                        ..+.+||+.+.+  .+..+...... .++.. -++.+++.|+.++     .|.+||...
T Consensus       218 ~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~  276 (302)
T 2xn4_A          218 VRKSVEVYDPTTNAWRQVADMNMCRRN-AGVCA-VNGLLYVVGGDDGSCNLASVEYYNPTT  276 (302)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSSCCBS-CEEEE-ETTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred             ccceEEEEeCCCCCEeeCCCCCCcccc-CeEEE-ECCEEEEECCcCCCcccccEEEEcCCC
Confidence              368899987653  22222111111 11222 2667788888654     377777643

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.22  E-value=0.039  Score=47.47  Aligned_cols=222  Identities=14%  Similarity=0.094  Sum_probs=105.8

Q ss_pred             cEEEEeeC--CCeEEEeeCCCCCeeee--eeccccEeEEEEcCCCCeEEEeeCC----CeEEEEECCCCCCCCeeecCCC
Q 018784           74 LFSASGSA--DFTAKLWDALTGDEKHS--FEHKHIVRACAFSEDTHLLLTGGFE----KILRIFDLNRPDAPPREVGNSS  145 (350)
Q Consensus        74 ~~l~s~s~--Dg~v~vWd~~~~~~~~~--~~h~~~V~~~~~~~~~~~l~sg~~d----~~v~vwd~~~~~~~~~~~~~~~  145 (350)
                      .+++-||.  ...+.++|..+.+-...  +.....-.++. ..++.+++.|+.+    ..+.+||+.+............
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~   91 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACV-FWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP   91 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEE-EETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEE-EECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence            34444444  35677888766542211  11111111121 2356677777755    6688888865431111000000


Q ss_pred             CcEEEEEEeCCCCcEEEEEeCC------CeEEEEECCCCceeEe--ecCCCCeEEEEEecCCcEEEEEc----------C
Q 018784          146 GSIRTVAWLHSDQTILSSCTDS------GGVRLWDARSGKIVQT--LETKSPVTSAEVSRDGRYITTAD----------G  207 (350)
Q Consensus       146 ~~v~~~~~~~~~~~~~~s~~~d------g~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~----------~  207 (350)
                      ..-.+++..  ++.+++.|+.+      ..+.+||+.+.+-...  +.....-.++.. -++++++.+.          -
T Consensus        92 r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~  168 (306)
T 3ii7_A           92 RDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVL  168 (306)
T ss_dssp             CBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEEC
T ss_pred             ccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCccccc
Confidence            000111122  45666666654      4688999887642221  111111112222 3556554431          2


Q ss_pred             CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCC-----CeEEEEEcccCe--eEEeecCCCcCEEEEEEcC
Q 018784          208 SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED-----MWVHVFDFHTGE--QIGCNKGHHGPVHCVRFSP  280 (350)
Q Consensus       208 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-----~~i~v~d~~~~~--~~~~~~~h~~~v~~l~~sp  280 (350)
                      ..+.+||+.+..-...-.++............+++++.|+.+     ..+.+||+.+.+  .+..+........++.+  
T Consensus       169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--  246 (306)
T 3ii7_A          169 NSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--  246 (306)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--
T ss_pred             ceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--
Confidence            458899987765433223332222222222246788888864     358889987653  22222111111222333  


Q ss_pred             CCCEEEEecCC-----CcEEEecCCC
Q 018784          281 GGESYASGSED-----GTIRIWQTNP  301 (350)
Q Consensus       281 ~~~~lasgs~D-----g~v~vw~~~~  301 (350)
                      ++.+++.|+.+     ..+.+||...
T Consensus       247 ~~~i~v~GG~~~~~~~~~~~~yd~~~  272 (306)
T 3ii7_A          247 GSIVYVLAGFQGVGRLGHILEYNTET  272 (306)
T ss_dssp             TTEEEEEECBCSSSBCCEEEEEETTT
T ss_pred             CCEEEEEeCcCCCeeeeeEEEEcCCC
Confidence            66788888855     3566776543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.19  E-value=0.066  Score=46.32  Aligned_cols=209  Identities=12%  Similarity=0.126  Sum_probs=95.9

Q ss_pred             EEEEEeCCCCeeEeeCCCCceee-eccCccCCeEEEEECCCCcEEEEeeC----CC-------eEEEeeCCCCCeeee--
Q 018784           33 FLVSASKDSSPMLRNGETGDWIG-TFEGHKGAVWSCCLDANALFSASGSA----DF-------TAKLWDALTGDEKHS--   98 (350)
Q Consensus        33 ~lasgs~d~~v~iw~~~~~~~~~-~l~gH~~~V~~v~~~~~~~~l~s~s~----Dg-------~v~vWd~~~~~~~~~--   98 (350)
                      +++.|+.  .+.+||..+.++.. .+......-...+...++.+++.||.    ++       .+.++|..+.+-...  
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   95 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP   95 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence            4555553  37889998888765 12211222222333456677666663    22       166778765542211  


Q ss_pred             eeccccEeEEEEcCCCCeEEEeeCC-------CeEEEEECCCCCCCCeeecCCCCcE--EEEEEeCCCCcEEEEEeC---
Q 018784           99 FEHKHIVRACAFSEDTHLLLTGGFE-------KILRIFDLNRPDAPPREVGNSSGSI--RTVAWLHSDQTILSSCTD---  166 (350)
Q Consensus        99 ~~h~~~V~~~~~~~~~~~l~sg~~d-------~~v~vwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~s~~~---  166 (350)
                      +.....-.+++. .++.+++.|+.+       ..+.+||+.+.+.  ..........  .+++.  .++.+++.|+.   
T Consensus        96 ~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~  170 (318)
T 2woz_A           96 LPSARCLFGLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKW--SEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDD  170 (318)
T ss_dssp             BSSCBCSCEEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEE--EEECCCSSCEESCEEEE--ETTEEEEECCEESS
T ss_pred             CCccccccceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCE--eECCCCCCcccccEEEE--ECCEEEEEcCCCCC
Confidence            111111112221 256667777754       3477788764321  1111101000  11111  24556555543   


Q ss_pred             ---CCeEEEEECCCCce--eEeecCCCCeEEEEEecCCcEEE-EEcC-----CcEEEEECCCcceeeeeecCCCCceeEe
Q 018784          167 ---SGGVRLWDARSGKI--VQTLETKSPVTSAEVSRDGRYIT-TADG-----SSVKFWDANHFGLVKGYNMPCNTESASL  235 (350)
Q Consensus       167 ---dg~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~-~~~~-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~  235 (350)
                         -..+.++|+.+.+=  +..+.....-..++.. ++++++ .+.+     ..+.+||+.+..-...-.++........
T Consensus       171 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  249 (318)
T 2woz_A          171 KKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISL  249 (318)
T ss_dssp             SCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEE
T ss_pred             CCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEE
Confidence               13589999987642  2111111111222233 455544 3321     3577899877554332223322222222


Q ss_pred             cCCCCcEEEEecCC
Q 018784          236 EPKLGNIFIAGGED  249 (350)
Q Consensus       236 ~~~~~~~l~sg~~d  249 (350)
                      ....+.+++.|+.+
T Consensus       250 ~~~~~~i~v~GG~~  263 (318)
T 2woz_A          250 VSLAGSLYAIGGFA  263 (318)
T ss_dssp             EEETTEEEEECCBC
T ss_pred             EEECCEEEEECCee
Confidence            22246788888754

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.15  E-value=0.046  Score=47.52  Aligned_cols=153  Identities=10%  Similarity=0.135  Sum_probs=99.3

Q ss_pred             EEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEe-ecCC-------CCeEEEEE---ecCCcEEEEEc-----------
Q 018784          149 RTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQT-LETK-------SPVTSAEV---SRDGRYITTAD-----------  206 (350)
Q Consensus       149 ~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~-~~~~-------~~v~~~~~---~~~~~~l~~~~-----------  206 (350)
                      .++.|...++.++++.-..++|..||...+..... +..-       ..+..+.+   .|+++++++.+           
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            35678777888888887889999999976543322 2221       13567888   68888887543           


Q ss_pred             ---CCcEEEEECC---CcceeeeeecCC--------------CCceeEecCCCCcEEEEecCC-CeEEEEEcccCeeEEe
Q 018784          207 ---GSSVKFWDAN---HFGLVKGYNMPC--------------NTESASLEPKLGNIFIAGGED-MWVHVFDFHTGEQIGC  265 (350)
Q Consensus       207 ---~~~i~vwd~~---~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~sg~~d-~~i~v~d~~~~~~~~~  265 (350)
                         +..+..||+.   +.+.+....+..              ....+...+ .|+.+++++.. +.|..++.... .+..
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG~-~~~~  173 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADGK-TVST  173 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTSC-CEEE
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCCC-EEee
Confidence               4568899998   666654444321              112233333 58888988888 88777775533 2222


Q ss_pred             e-c----C-CCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCC
Q 018784          266 N-K----G-HHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPN  303 (350)
Q Consensus       266 ~-~----~-h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~  303 (350)
                      + .    . .....+.|+++|++..|+.....|.|.-+|+..+.
T Consensus       174 ~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv  217 (334)
T 2p9w_A          174 FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPY  217 (334)
T ss_dssp             EEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSS
T ss_pred             eeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCc
Confidence            1 1    1 11125689999999887766559999999987443

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.99  E-value=0.055  Score=46.61  Aligned_cols=181  Identities=16%  Similarity=0.153  Sum_probs=85.6

Q ss_pred             CCCeEEEeeC----C-----CeEEEEECCCCCCCCee-ecCCCCcEEEEEEeCCCCcEEEEEeCC-----CeEEEEECCC
Q 018784          113 DTHLLLTGGF----E-----KILRIFDLNRPDAPPRE-VGNSSGSIRTVAWLHSDQTILSSCTDS-----GGVRLWDARS  177 (350)
Q Consensus       113 ~~~~l~sg~~----d-----~~v~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~s~~~d-----g~i~iwd~~~  177 (350)
                      ++.+++.|+.    +     ..+.+||+.+....... ........ +++..  ++.+++.|+.+     ..+.+||+.+
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~  146 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI-GVGVI--DGHIYAVGGSHGCIHHNSVERYEPER  146 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC-EEEEE--TTEEEEECCEETTEECCCEEEEETTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCcccc-EEEEE--CCEEEEEcCCCCCcccccEEEECCCC
Confidence            5666677765    2     35778887643211000 00011111 12222  45566655532     3688899887


Q ss_pred             CceeEe--ecCCCCeEEEEEecCCcEEEEE-c-----CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCC
Q 018784          178 GKIVQT--LETKSPVTSAEVSRDGRYITTA-D-----GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED  249 (350)
Q Consensus       178 ~~~~~~--~~~~~~v~~~~~~~~~~~l~~~-~-----~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d  249 (350)
                      .+-...  +.....-.+++.. ++++++.+ .     -..+.+||+.+..-...-.++............+.+++.|+.+
T Consensus       147 ~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  225 (308)
T 1zgk_A          147 DEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYD  225 (308)
T ss_dssp             TEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred             CeEeECCCCCccccceEEEEE-CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCC
Confidence            642211  1111111122222 55555443 2     2458899987755433222222222111112257888888865


Q ss_pred             -----CeEEEEEcccCee--EEeecCCCcCEEEEEEcCCCCEEEEecCCC-----cEEEecC
Q 018784          250 -----MWVHVFDFHTGEQ--IGCNKGHHGPVHCVRFSPGGESYASGSEDG-----TIRIWQT  299 (350)
Q Consensus       250 -----~~i~v~d~~~~~~--~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg-----~v~vw~~  299 (350)
                           ..+.+||+.+.+=  +..+...... .++... ++++++.|+.++     .|.+||.
T Consensus       226 ~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~  285 (308)
T 1zgk_A          226 GQDQLNSVERYDVETETWTFVAPMKHRRSA-LGITVH-QGRIYVLGGYDGHTFLDSVECYDP  285 (308)
T ss_dssp             SSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEE-TTEEEEECCBCSSCBCCEEEEEET
T ss_pred             CCCccceEEEEeCCCCcEEECCCCCCCccc-eEEEEE-CCEEEEEcCcCCCcccceEEEEcC
Confidence                 4688999876542  2211111111 122222 567777777543     3555554

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=96.93  E-value=0.19  Score=44.36  Aligned_cols=223  Identities=14%  Similarity=0.075  Sum_probs=116.4

Q ss_pred             CeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC-eeeee----eccccEeEEEEcCC---CCeEEEeeC----C----CeE
Q 018784           63 AVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSF----EHKHIVRACAFSED---THLLLTGGF----E----KIL  126 (350)
Q Consensus        63 ~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~-~~~~~----~h~~~V~~~~~~~~---~~~l~sg~~----d----~~v  126 (350)
                      .-+.+++.+++.++++ ..+|.|++++. .+. .+..+    ........++++|+   +..|+.+..    +    ..|
T Consensus        30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVT-ERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             CEEEEEEEETTEEEEE-ETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            3468899999997776 45699999973 343 11111    12245789999997   444544332    3    567


Q ss_pred             EEEECCCCCCCC-------eeec-CCCCcEEEEEEeCCCCcEEEEEeC-------------CCeEEEEECCCC-------
Q 018784          127 RIFDLNRPDAPP-------REVG-NSSGSIRTVAWLHSDQTILSSCTD-------------SGGVRLWDARSG-------  178 (350)
Q Consensus       127 ~vwd~~~~~~~~-------~~~~-~~~~~v~~~~~~~~~~~~~~s~~~-------------dg~i~iwd~~~~-------  178 (350)
                      ..|++.......       .... ........++|.+ ++.++++-++             .|+|.-++....       
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf  186 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF  186 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence            777765331110       0011 1011134567765 4456655432             145555554321       


Q ss_pred             --ceeEeecCCCCeEEEEEec-CCcEEEEEcCC----cEEEEECCC-c---------------ceeeee-ecCCCCceeE
Q 018784          179 --KIVQTLETKSPVTSAEVSR-DGRYITTADGS----SVKFWDANH-F---------------GLVKGY-NMPCNTESAS  234 (350)
Q Consensus       179 --~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~----~i~vwd~~~-~---------------~~~~~~-~~~~~~~~~~  234 (350)
                        ..+... .......++|+| +++++++-.+.    .|.+..... +               .++..+ ........+.
T Consensus       187 ~~~~i~a~-G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~  265 (354)
T 3a9g_A          187 PNSPIWSY-GHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS  265 (354)
T ss_dssp             TTCCEEEE-CCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred             CCCcEEEE-ccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence              011111 122345788999 77777765432    344443211 0               011111 0011122223


Q ss_pred             ec------CCCCcEEEEecCCCeEEEEEcccC-eeE--Ee-ecCCCcCEEEEEEcCCCCEEEEec
Q 018784          235 LE------PKLGNIFIAGGEDMWVHVFDFHTG-EQI--GC-NKGHHGPVHCVRFSPGGESYASGS  289 (350)
Q Consensus       235 ~~------~~~~~~l~sg~~d~~i~v~d~~~~-~~~--~~-~~~h~~~v~~l~~sp~~~~lasgs  289 (350)
                      +.      ...+.++++....+.|...++... ...  .. +.+-...+..+++.|||.++++..
T Consensus       266 ~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          266 FVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             ECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             EECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            31      134678888777888999988753 321  22 223345689999999998776653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.85  E-value=0.096  Score=45.21  Aligned_cols=207  Identities=13%  Similarity=0.072  Sum_probs=97.1

Q ss_pred             EEEeeCCCeEEEeeCCCCCeee-eeecc-ccEeEEEEcCCCCeEEEeeC-----C------CeEEEEECCCCCCCCeeec
Q 018784           76 SASGSADFTAKLWDALTGDEKH-SFEHK-HIVRACAFSEDTHLLLTGGF-----E------KILRIFDLNRPDAPPREVG  142 (350)
Q Consensus        76 l~s~s~Dg~v~vWd~~~~~~~~-~~~h~-~~V~~~~~~~~~~~l~sg~~-----d------~~v~vwd~~~~~~~~~~~~  142 (350)
                      ++-|+  ..+.++|..+++-.. .+..+ ..........++.+++.|+.     .      ..+.+||+.+.+.  ....
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~~~   83 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW--LGMP   83 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE--EECC
T ss_pred             EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE--EECC
Confidence            34444  568888887765221 11111 11222233456777777773     1      1266778764321  1111


Q ss_pred             CCCCcE--EEEEEeCCCCcEEEEEeCC--------CeEEEEECCCCce--eEeecCCCCeEEEEEecCCcEEEEE-c-C-
Q 018784          143 NSSGSI--RTVAWLHSDQTILSSCTDS--------GGVRLWDARSGKI--VQTLETKSPVTSAEVSRDGRYITTA-D-G-  207 (350)
Q Consensus       143 ~~~~~v--~~~~~~~~~~~~~~s~~~d--------g~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~-~-~-  207 (350)
                      ......  .+++..  ++.+++.|+.+        ..+.++|+.+.+=  +..+.....-.+++. -++++++.+ . + 
T Consensus        84 ~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~  160 (315)
T 4asc_A           84 PLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSD  160 (315)
T ss_dssp             CBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTT
T ss_pred             CCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCC
Confidence            000000  112222  45566666532        4588999887642  111111111112222 445555443 2 1 


Q ss_pred             ----CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCC-----eEEEEEcccCe--eEEeecCCCcCEEEE
Q 018784          208 ----SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM-----WVHVFDFHTGE--QIGCNKGHHGPVHCV  276 (350)
Q Consensus       208 ----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~-----~i~v~d~~~~~--~~~~~~~h~~~v~~l  276 (350)
                          ..+.+||+.+..-...-.++............+++++.|+.++     .+.+||+.+.+  .+..+.........+
T Consensus       161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  240 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLV  240 (315)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred             CcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEE
Confidence                3589999887654332223322222222222468888888654     57888887653  222211111111222


Q ss_pred             EEcCCCCEEEEecCC
Q 018784          277 RFSPGGESYASGSED  291 (350)
Q Consensus       277 ~~sp~~~~lasgs~D  291 (350)
                      .+  ++++++.|+.+
T Consensus       241 ~~--~~~l~v~GG~~  253 (315)
T 4asc_A          241 SL--VGTLYAIGGFA  253 (315)
T ss_dssp             EE--TTEEEEEEEEE
T ss_pred             EE--CCEEEEECCcc
Confidence            22  56777777764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.77  E-value=0.031  Score=49.05  Aligned_cols=189  Identities=12%  Similarity=0.047  Sum_probs=100.9

Q ss_pred             cEEEEEeCCCCeeEeeCCCCceeeeccCc-cCCeEEEEEC---CCCcEEEEe-eCCCeEEEeeCCCCCeeeeeeccccEe
Q 018784           32 FFLVSASKDSSPMLRNGETGDWIGTFEGH-KGAVWSCCLD---ANALFSASG-SADFTAKLWDALTGDEKHSFEHKHIVR  106 (350)
Q Consensus        32 ~~lasgs~d~~v~iw~~~~~~~~~~l~gH-~~~V~~v~~~---~~~~~l~s~-s~Dg~v~vWd~~~~~~~~~~~h~~~V~  106 (350)
                      .+|+.++.||.+.-.|.++|+.+.+++.- ..++....-.   .++..++.. ..||.+..++..++..+..+.-+..+.
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47888999999999999999998887653 1233221111   133444443 589999999988876555443222221


Q ss_pred             E--EEEc-----------CCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCC-Cc-----EEEEEEe----CCCCcEEEE
Q 018784          107 A--CAFS-----------EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS-GS-----IRTVAWL----HSDQTILSS  163 (350)
Q Consensus       107 ~--~~~~-----------~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~-~~-----v~~~~~~----~~~~~~~~s  163 (350)
                      .  +...           ..+..+++|+.++.+...|+.+++.......... +.     ..+....    ...+..++.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence            1  1111           1456788999999999999987765443322111 10     0000000    011123333


Q ss_pred             EeCCCeEEEEECCCCceeEeecC----CCCeE-----EEEEecCCcEEEEEcCCcEEEEECCCcceee
Q 018784          164 CTDSGGVRLWDARSGKIVQTLET----KSPVT-----SAEVSRDGRYITTADGSSVKFWDANHFGLVK  222 (350)
Q Consensus       164 ~~~dg~i~iwd~~~~~~~~~~~~----~~~v~-----~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~  222 (350)
                      +..+..+.+.+ ++|+ +..+..    ...+.     .-....++.++++..++.|.-+|..++..+.
T Consensus       171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTCCEEE
T ss_pred             ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECCCCEEEEEECCCCcEEE
Confidence            44445666655 4453 222110    00000     0001134666777778888888887776654

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.69  E-value=0.27  Score=42.69  Aligned_cols=158  Identities=10%  Similarity=0.068  Sum_probs=101.0

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceee-eccC----ccC--CeEEEEE---CCCCcEEEEee-------
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG-TFEG----HKG--AVWSCCL---DANALFSASGS-------   80 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~-~l~g----H~~--~V~~v~~---~~~~~~l~s~s-------   80 (350)
                      .--++.|++  .++.++++.-..++|..|+...+.... .+.+    ...  .+..+.+   .+++++++...       
T Consensus        14 yPE~~~wd~--~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           14 TPEDTIYDR--TRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             CCSCEEEET--TTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             CCcCccCcC--CCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            334666764  356777766688999999987654332 3433    111  3578889   68888887543       


Q ss_pred             ------CCCeEEEeeCC---CCCeeeeeec-------------c-ccEeEEEEcCCCCeEEEeeCC-CeEEEEECCCCCC
Q 018784           81 ------ADFTAKLWDAL---TGDEKHSFEH-------------K-HIVRACAFSEDTHLLLTGGFE-KILRIFDLNRPDA  136 (350)
Q Consensus        81 ------~Dg~v~vWd~~---~~~~~~~~~h-------------~-~~V~~~~~~~~~~~l~sg~~d-~~v~vwd~~~~~~  136 (350)
                            .+..|..+|+.   +++.+....-             . .....++..++|+.-++++.- +.|...+......
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~  171 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV  171 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE
Confidence                  26789999998   7776655431             1 247889999999988888877 7766666543211


Q ss_pred             CCeeecC----CCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC
Q 018784          137 PPREVGN----SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG  178 (350)
Q Consensus       137 ~~~~~~~----~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~  178 (350)
                      .......    ...-...+++.+++..+++.-+ .|.|.-+|+++.
T Consensus       172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~p  216 (334)
T 2p9w_A          172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKP  216 (334)
T ss_dssp             EEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSS
T ss_pred             eeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCC
Confidence            1011111    1112446788776666666655 899999998843

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.56  E-value=0.24  Score=42.69  Aligned_cols=204  Identities=15%  Similarity=0.139  Sum_probs=91.5

Q ss_pred             eEEEeeCCCCCeee-eeec-cccEeEEEEcCCCCeEEEeeC----CC-------eEEEEECCCCCCCCeeecCCCCcEEE
Q 018784           84 TAKLWDALTGDEKH-SFEH-KHIVRACAFSEDTHLLLTGGF----EK-------ILRIFDLNRPDAPPREVGNSSGSIRT  150 (350)
Q Consensus        84 ~v~vWd~~~~~~~~-~~~h-~~~V~~~~~~~~~~~l~sg~~----d~-------~v~vwd~~~~~~~~~~~~~~~~~v~~  150 (350)
                      .+.++|..+.+-.. .... ...........++.+++.|+.    ++       .+.+||+.+.+............-.+
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  104 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG  104 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence            37788887665322 1111 111122233456777777773    11       16677875432110000000000111


Q ss_pred             EEEeCCCCcEEEEEeCC-------CeEEEEECCCCceeEeecCCCCe-EEEEEecCCcEEEEEc-------CCcEEEEEC
Q 018784          151 VAWLHSDQTILSSCTDS-------GGVRLWDARSGKIVQTLETKSPV-TSAEVSRDGRYITTAD-------GSSVKFWDA  215 (350)
Q Consensus       151 ~~~~~~~~~~~~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~-------~~~i~vwd~  215 (350)
                      ++..  ++.+++.|+.+       ..+.++|+.+.+=...-..+.+. ...+...++++++.+.       -..+.+||+
T Consensus       105 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~  182 (318)
T 2woz_A          105 LGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNP  182 (318)
T ss_dssp             EEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEET
T ss_pred             eEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcC
Confidence            2222  45566555543       35888898876422211111111 1112224566554431       135899998


Q ss_pred             CCcceeeeeecCCCCceeEecCCCCcEEEEecCC-----CeEEEEEcccCe--eEEeecCCCcCEEEEEEcCCCCEEEEe
Q 018784          216 NHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED-----MWVHVFDFHTGE--QIGCNKGHHGPVHCVRFSPGGESYASG  288 (350)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-----~~i~v~d~~~~~--~~~~~~~h~~~v~~l~~sp~~~~lasg  288 (350)
                      .+..-...-.++............+.+++.|+.+     ..+.+||+.+.+  .+..+...... .++.. -++++++.|
T Consensus       183 ~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~-~~~~i~v~G  260 (318)
T 2woz_A          183 KKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSS-ISLVS-LAGSLYAIG  260 (318)
T ss_dssp             TTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBS-CEEEE-ETTEEEEEC
T ss_pred             CCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccc-eEEEE-ECCEEEEEC
Confidence            8765433222332222111112246888888754     357788887643  22222111111 12222 256777777


Q ss_pred             cCC
Q 018784          289 SED  291 (350)
Q Consensus       289 s~D  291 (350)
                      +.+
T Consensus       261 G~~  263 (318)
T 2woz_A          261 GFA  263 (318)
T ss_dssp             CBC
T ss_pred             Cee
Confidence            754

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.56  E-value=0.87  Score=46.85  Aligned_cols=268  Identities=9%  Similarity=0.038  Sum_probs=134.4

Q ss_pred             ceeEEEecccCCCccEEEEEeCC---------CCeeEeeCCCCceeeeccCcc-CCeEEEEECCCCcEEEEeeCCCeEEE
Q 018784           18 PVVDLFYSPITPDGFFLVSASKD---------SSPMLRNGETGDWIGTFEGHK-GAVWSCCLDANALFSASGSADFTAKL   87 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d---------~~v~iw~~~~~~~~~~l~gH~-~~V~~v~~~~~~~~l~s~s~Dg~v~v   87 (350)
                      .+-.+..+.+..+...|+.+.-.         ..|++.+......+..+..-. ..|...+... . +++.++ .+.+.+
T Consensus       460 ~veev~~~gf~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~-~-~vvva~-g~~l~~  536 (1158)
T 3ei3_A          460 EVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNS-S-QVVVAV-GRALYY  536 (1158)
T ss_dssp             EEEEECCTTCCSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEECS-S-EEEEEE-TTEEEE
T ss_pred             cccccccccccCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC-C-EEEEEE-CCEEEE
Confidence            44455555555566666666421         234556655444554554322 3465555543 3 333333 578888


Q ss_pred             eeCCCCCe--eeeeeccccEeEEEEcCC------CCeEEEeeC-CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeC-CC
Q 018784           88 WDALTGDE--KHSFEHKHIVRACAFSED------THLLLTGGF-EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLH-SD  157 (350)
Q Consensus        88 Wd~~~~~~--~~~~~h~~~V~~~~~~~~------~~~l~sg~~-d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~  157 (350)
                      +++..+..  .....-...|.|+++.|.      +.+++.|.+ |++++|+.+..-+..............++.... .+
T Consensus       537 fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~  616 (1158)
T 3ei3_A          537 LQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFES  616 (1158)
T ss_dssp             EEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETT
T ss_pred             EEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCC
Confidence            87765431  222234567999999763      468999997 999999999743222111111122344443321 23


Q ss_pred             CcEEEEEeCCCeEEEE--ECCCCceeEe---ecCCCCeEEEEEecCCc-EEEEEcCCcEEEEECCCcceeeeeecCCCCc
Q 018784          158 QTILSSCTDSGGVRLW--DARSGKIVQT---LETKSPVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGYNMPCNTE  231 (350)
Q Consensus       158 ~~~~~s~~~dg~i~iw--d~~~~~~~~~---~~~~~~v~~~~~~~~~~-~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~  231 (350)
                      ..++..|-.||.+.-+  |..+|+....   .-+..++.-..+...+. -+.+.++....++--++.-............
T Consensus       617 ~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~  696 (1158)
T 3ei3_A          617 SHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNY  696 (1158)
T ss_dssp             EEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSSSCCCE
T ss_pred             CcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccChHHhce
Confidence            4567778888987655  4445544322   12334444333433332 2223333333333222211111112222223


Q ss_pred             eeEecCCC-CcEEEEecCCCeEEEEEcccCeeEEee-cCCCcCEEEEEEcCCCCEEEEec
Q 018784          232 SASLEPKL-GNIFIAGGEDMWVHVFDFHTGEQIGCN-KGHHGPVHCVRFSPGGESYASGS  289 (350)
Q Consensus       232 ~~~~~~~~-~~~l~sg~~d~~i~v~d~~~~~~~~~~-~~h~~~v~~l~~sp~~~~lasgs  289 (350)
                      .+.|+... .+-++..+ ++.+++..+.+.+....- ..-...+..++++|..+.++.+.
T Consensus       697 ~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~  755 (1158)
T 3ei3_A          697 MCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS  755 (1158)
T ss_dssp             EEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEE
T ss_pred             EeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEE
Confidence            34444321 23333333 456998887543322211 11234688999999887765544

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.41  E-value=0.22  Score=43.64  Aligned_cols=91  Identities=10%  Similarity=0.139  Sum_probs=45.0

Q ss_pred             CccEEEEEeCC-CCeeEeeCCC--Cceee--ecc-CccCCeEEEEECCCCcEEEEeeC-C---------CeEEEeeCCCC
Q 018784           30 DGFFLVSASKD-SSPMLRNGET--GDWIG--TFE-GHKGAVWSCCLDANALFSASGSA-D---------FTAKLWDALTG   93 (350)
Q Consensus        30 dg~~lasgs~d-~~v~iw~~~~--~~~~~--~l~-gH~~~V~~v~~~~~~~~l~s~s~-D---------g~v~vWd~~~~   93 (350)
                      ++++.+.|+.+ ..+.++|..+  .++..  .+. .....-.++.+  ++.+++-||. +         ..+.++|+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            56666777643 4577888763  55542  222 11111112222  5666666665 2         46788888765


Q ss_pred             Ceeee--ee-ccccEeEEEEcCCCCeEEEeeCC
Q 018784           94 DEKHS--FE-HKHIVRACAFSEDTHLLLTGGFE  123 (350)
Q Consensus        94 ~~~~~--~~-h~~~V~~~~~~~~~~~l~sg~~d  123 (350)
                      +-...  .. ....-.++. ..++++++.|+.+
T Consensus        97 ~W~~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~  128 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTF-VHNGKAYVTGGVN  128 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEE-EETTEEEEEECCC
T ss_pred             cEEECCCCCCcccccceEE-EECCEEEEEeCcC
Confidence            42211  11 111111122 2567777778754

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.31  E-value=0.52  Score=41.54  Aligned_cols=183  Identities=16%  Similarity=0.196  Sum_probs=101.5

Q ss_pred             eEEEEcCCCCeEEEe------------eCCCeEEEEECCCCCCCCeee---cC----CCCcEEEEEEeC--CCC-cEEEE
Q 018784          106 RACAFSEDTHLLLTG------------GFEKILRIFDLNRPDAPPREV---GN----SSGSIRTVAWLH--SDQ-TILSS  163 (350)
Q Consensus       106 ~~~~~~~~~~~l~sg------------~~d~~v~vwd~~~~~~~~~~~---~~----~~~~v~~~~~~~--~~~-~~~~s  163 (350)
                      ..+...|+|..++++            -.+|.|.++|+.++......+   ..    .......+.+..  ++. ++++.
T Consensus        53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv  132 (355)
T 3sre_A           53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  132 (355)
T ss_dssp             CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence            445556666544443            268899999987433222211   11    123556666554  232 34444


Q ss_pred             EeC--CCeEEEEECCCC-c---eeEeecC--CCCeEEEEEecCCcEEEEEc------------------CCcEEEEECCC
Q 018784          164 CTD--SGGVRLWDARSG-K---IVQTLET--KSPVTSAEVSRDGRYITTAD------------------GSSVKFWDANH  217 (350)
Q Consensus       164 ~~~--dg~i~iwd~~~~-~---~~~~~~~--~~~v~~~~~~~~~~~l~~~~------------------~~~i~vwd~~~  217 (350)
                      ...  +.+|.+|++..+ .   .+..+..  -...+.+.+.++|.+.++..                  .+.|..+|...
T Consensus       133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~  212 (355)
T 3sre_A          133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND  212 (355)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC
T ss_pred             ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe
Confidence            333  467888876543 2   2233332  24678999999999877653                  13455555532


Q ss_pred             cceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEccc-Cee--EEeecCCCcCEEEEEEcC-CCCEEEEecCC
Q 018784          218 FGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT-GEQ--IGCNKGHHGPVHCVRFSP-GGESYASGSED  291 (350)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~-~~~--~~~~~~h~~~v~~l~~sp-~~~~lasgs~D  291 (350)
                      ...+  ...-.....+.+.++...++++-+..+.|+.|++.. +..  ...+ ...+..-.+++.+ +|.+.+++..+
T Consensus       213 ~~~~--~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          213 VRVV--AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             CEEE--EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred             EEEe--ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence            1111  111123345667775456677777788999999863 332  1222 2245567788888 58877766544

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.11  E-value=0.66  Score=41.74  Aligned_cols=139  Identities=14%  Similarity=0.193  Sum_probs=89.0

Q ss_pred             CCCcEEEEEeCCCeEEEEECCCCceeEeecCC-----CCeEEEEEecCCcEEEEEcCCcEEEEECCCcc-----------
Q 018784          156 SDQTILSSCTDSGGVRLWDARSGKIVQTLETK-----SPVTSAEVSRDGRYITTADGSSVKFWDANHFG-----------  219 (350)
Q Consensus       156 ~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~-----------  219 (350)
                      .+..+++.  .++.||.-++..+..-+.+...     ..+..+..+|+|++|+......|.|..+....           
T Consensus        31 n~t~i~~a--~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           31 NGTRIVFI--QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTEEEEE--ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred             CCCEEEEE--ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccc
Confidence            34444433  2378998888754434444433     25788999999999999988899999886221           


Q ss_pred             -eeeeeecC-------CCCceeEecCC--CCcEEEEecCCCeEEEEEcccCe--eEEeec---------CCCcCEEEEEE
Q 018784          220 -LVKGYNMP-------CNTESASLEPK--LGNIFIAGGEDMWVHVFDFHTGE--QIGCNK---------GHHGPVHCVRF  278 (350)
Q Consensus       220 -~~~~~~~~-------~~~~~~~~~~~--~~~~l~sg~~d~~i~v~d~~~~~--~~~~~~---------~h~~~v~~l~~  278 (350)
                       ..+.+...       .....+.++|.  .+..|++=..|+.|++||+....  +. .+.         .....|.+++|
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~F  187 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEF  187 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEE
Confidence             12233332       12344556664  35688888999999999997522  11 221         22256889999


Q ss_pred             cCCCCEEEE--ecCCCcEEEe
Q 018784          279 SPGGESYAS--GSEDGTIRIW  297 (350)
Q Consensus       279 sp~~~~las--gs~Dg~v~vw  297 (350)
                      .+++=.|..  ....|.|+-.
T Consensus       188 g~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          188 SKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             CTTSSCEEEEECTTSCEEEEE
T ss_pred             cCCCcEEEEEecCCCCCEEEE
Confidence            987644444  5578887654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.08  E-value=0.31  Score=42.69  Aligned_cols=135  Identities=10%  Similarity=0.028  Sum_probs=60.9

Q ss_pred             CeEEEEECCCCc--eeEeecCCCCe-EEEEEecCCcEEEEE-c------CCcEEEEEC--CCccee--eeeecCCCCcee
Q 018784          168 GGVRLWDARSGK--IVQTLETKSPV-TSAEVSRDGRYITTA-D------GSSVKFWDA--NHFGLV--KGYNMPCNTESA  233 (350)
Q Consensus       168 g~i~iwd~~~~~--~~~~~~~~~~v-~~~~~~~~~~~l~~~-~------~~~i~vwd~--~~~~~~--~~~~~~~~~~~~  233 (350)
                      ..+.++|+.+.+  .+..+...... .+++.. ++++++.+ .      ...+.+||+  .+..-.  .....+......
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence            478999988764  22222222122 233333 45554433 1      235677776  333222  222112111121


Q ss_pred             EecCCCCcEEEEecCC----------------------CeEEEEEcccC--eeEEeecCCCcCEEEEEEcCCCCEEEEec
Q 018784          234 SLEPKLGNIFIAGGED----------------------MWVHVFDFHTG--EQIGCNKGHHGPVHCVRFSPGGESYASGS  289 (350)
Q Consensus       234 ~~~~~~~~~l~sg~~d----------------------~~i~v~d~~~~--~~~~~~~~h~~~v~~l~~sp~~~~lasgs  289 (350)
                      ......+.+++.|+.+                      ..+.+||+.+.  +.+..+......-.++  .-++++++.|+
T Consensus       247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG  324 (357)
T 2uvk_A          247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGG  324 (357)
T ss_dssp             EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEE
T ss_pred             eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEee
Confidence            1222246888888842                      25778888654  3443332211111222  23677888888


Q ss_pred             CCC------cEEEecCCCCCcc
Q 018784          290 EDG------TIRIWQTNPPNHE  305 (350)
Q Consensus       290 ~Dg------~v~vw~~~~~~~~  305 (350)
                      .++      .|.+.+++..+..
T Consensus       325 ~~~~~~~~~~v~~l~~~~~~~~  346 (357)
T 2uvk_A          325 ETAGGKAVTDSVLITVKDNKVT  346 (357)
T ss_dssp             ECGGGCEEEEEEEEEC-CCSCE
T ss_pred             eCCCCCEeeeEEEEEEcCcEeE
Confidence            653      2444465544433

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.77  E-value=0.94  Score=39.88  Aligned_cols=179  Identities=12%  Similarity=0.147  Sum_probs=96.2

Q ss_pred             EEEECCCCcEEEEee------------CCCeEEEeeCCCCC-eeeeeec--------cccEeEEEEcC--CCC--eEEEe
Q 018784           66 SCCLDANALFSASGS------------ADFTAKLWDALTGD-EKHSFEH--------KHIVRACAFSE--DTH--LLLTG  120 (350)
Q Consensus        66 ~v~~~~~~~~l~s~s------------~Dg~v~vWd~~~~~-~~~~~~h--------~~~V~~~~~~~--~~~--~l~sg  120 (350)
                      .+.+.++|..+++++            .+|.|.++|..+.. ....+..        .-....+.+.+  +++  ++++-
T Consensus        54 Di~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvn  133 (355)
T 3sre_A           54 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN  133 (355)
T ss_dssp             EEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred             eeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEE
Confidence            345677877766652            78999999986431 1122221        12466777755  343  33432


Q ss_pred             e--CCCeEEEEECCCCCCCCeee----cCCCCcEEEEEEeCCCCcEEEEEe-----------------CCCeEEEEECCC
Q 018784          121 G--FEKILRIFDLNRPDAPPREV----GNSSGSIRTVAWLHSDQTILSSCT-----------------DSGGVRLWDARS  177 (350)
Q Consensus       121 ~--~d~~v~vwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~s~~-----------------~dg~i~iwd~~~  177 (350)
                      .  .+.+|.+|++..........    ...-.....+.+.+ ++.++++..                 ..|.|..+|.  
T Consensus       134 h~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--  210 (355)
T 3sre_A          134 HPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--  210 (355)
T ss_dssp             CSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--
T ss_pred             CCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--
Confidence            2  25788898876433222111    12234566777664 455555543                 1245555555  


Q ss_pred             CceeEeecCCCCeEEEEEecCCcEEEEEc--CCcEEEEECCCc-c--eeeeeecCCCCceeEecCCCCcEEEEec
Q 018784          178 GKIVQTLETKSPVTSAEVSRDGRYITTAD--GSSVKFWDANHF-G--LVKGYNMPCNTESASLEPKLGNIFIAGG  247 (350)
Q Consensus       178 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~vwd~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~sg~  247 (350)
                      ++.......-...+.++|+||++.+..++  .+.|..||+... .  ..+.+..+..+..+.+...+|++++++.
T Consensus       211 ~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          211 NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             TCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEE
T ss_pred             CeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEec
Confidence            33222223334568899999998765543  568999987532 2  2223333333344445442367777554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=95.77  E-value=0.93  Score=39.80  Aligned_cols=98  Identities=17%  Similarity=0.170  Sum_probs=57.8

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCce--eeecc---CccCCeEEEEECCC----CcEEEEeeCC-----C
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTFE---GHKGAVWSCCLDAN----ALFSASGSAD-----F   83 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~--~~~l~---gH~~~V~~v~~~~~----~~~l~s~s~D-----g   83 (350)
                      ..+.++|.|   ||+++++ ..++.|++++  +++.  +..+.   .-......++++|+    +.+.++-...     .
T Consensus        32 ~P~~ia~~p---dG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           32 VPWALAFLP---DGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             CEEEEEECT---TSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CceEEEEcC---CCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            345788876   9986665 5568888887  4432  22221   12345688999998    5555554432     5


Q ss_pred             eEEEeeCCCCC---eeee---eec----cccEeEEEEcCCCCeEEEee
Q 018784           84 TAKLWDALTGD---EKHS---FEH----KHIVRACAFSEDTHLLLTGG  121 (350)
Q Consensus        84 ~v~vWd~~~~~---~~~~---~~h----~~~V~~~~~~~~~~~l~sg~  121 (350)
                      .|..++.....   ....   +..    ......++|.|+|.+.++-+
T Consensus       106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            67777765331   1111   221    12346899999997666643

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.50  E-value=1.4  Score=39.90  Aligned_cols=229  Identities=11%  Similarity=0.107  Sum_probs=133.3

Q ss_pred             EEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCC--
Q 018784           67 CCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS--  144 (350)
Q Consensus        67 v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~--  144 (350)
                      .-++|....+|--. ..+++|+|+++...+....-+..|.--.|-....+-++  .+..|.-|++.....+.+....|  
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lV--T~taVyHWsi~~~s~P~kvFdR~~~  147 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALV--TDNAVYHWSMEGESQPVKMFDRHSS  147 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEE--CSSEEEEEESSSSCCCEEEEECCGG
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEE--cCCeeEEecccCCCCchhheecchh
Confidence            34677776666543 78999999999887777665556655555433332222  24578999987644444433222  


Q ss_pred             --CCcEEEEEEeCCCCcEEEEEe------CCCeEEEEECCCCceeEeecCCCCeEEEEEecCC-----cEEEEE----cC
Q 018784          145 --SGSIRTVAWLHSDQTILSSCT------DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDG-----RYITTA----DG  207 (350)
Q Consensus       145 --~~~v~~~~~~~~~~~~~~s~~------~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~----~~  207 (350)
                        ...|......++...+++.|-      -.|.+.+|.++.+.. +.++++.... ..+-.+|     .+++-+    .+
T Consensus       148 L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-Q~ieGhaa~F-~~~~~~g~~~~~~lf~fa~r~~~g  225 (494)
T 1bpo_A          148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASF-AQFKMEGNAEESTLFCFAVRGQAG  225 (494)
T ss_dssp             GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-EEECCSEEEE-EEEECTTCSSEEEEEEEEECSTTC
T ss_pred             cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-chheeeeeee-EEEecCCCCCCceEEEEEEecCCC
Confidence              345666665555555555442      226788888765532 3333332211 1222121     233222    24


Q ss_pred             CcEEEEECCCc---c-ee--e--eeecCC-----CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEE
Q 018784          208 SSVKFWDANHF---G-LV--K--GYNMPC-----NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVH  274 (350)
Q Consensus       208 ~~i~vwd~~~~---~-~~--~--~~~~~~-----~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~  274 (350)
                      +.+++.++...   . ..  +  ...++.     .+.....++.. .++..-+.-|.|++||+.++.++..-+--..+|.
T Consensus       226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~ky-gviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF  304 (494)
T 1bpo_A          226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIF  304 (494)
T ss_dssp             CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccC-CEEEEEecCceEEEEecccceeeeeecccCCceE
Confidence            68899988543   1 11  1  111111     12233444443 3445556789999999999999988777777887


Q ss_pred             EEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784          275 CVRFSPGGESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       275 ~l~~sp~~~~lasgs~Dg~v~vw~~~~  301 (350)
                      ..+..+...-++.-...|.|.--.++.
T Consensus       305 ~t~~~~~~~Gi~~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          305 VTAPHEATAGIIGVNRKGQVLSVCVEE  331 (494)
T ss_dssp             EEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred             EecccCCCCcEEEEccCceEEEEEEcc
Confidence            777766655666666888877766543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.33  E-value=2.1  Score=44.62  Aligned_cols=227  Identities=11%  Similarity=0.109  Sum_probs=122.0

Q ss_pred             EECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCe-EEEeeCCCeEEEEECCCCCCCCeeecCC--
Q 018784           68 CLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL-LLTGGFEKILRIFDLNRPDAPPREVGNS--  144 (350)
Q Consensus        68 ~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~-l~sg~~d~~v~vwd~~~~~~~~~~~~~~--  144 (350)
                      -++|....+|-- ...+++|+|+++...+....-+..|.--.|-....+ |+|   +..|.-|++.....|.+....|  
T Consensus        72 IMnP~~~iiALr-ag~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT---~~aVyHW~~~~~s~P~k~fdR~~~  147 (1630)
T 1xi4_A           72 IMNPASKVIALK-AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT---DNAVYHWSMEGESQPVKMFDRHSS  147 (1630)
T ss_pred             ccCCCcceEEEe-cCCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEc---CCeEEEeccCCCCccHHHHhcchh
Confidence            356777666654 378999999988876666655556666666444333 333   4579999997544443332222  


Q ss_pred             --CCcEEEEEEeCCCCcEEEEEe------CCCeEEEEECCCCceeEeecCCCC-eEEEEEe---cCCcEEEEE----cCC
Q 018784          145 --SGSIRTVAWLHSDQTILSSCT------DSGGVRLWDARSGKIVQTLETKSP-VTSAEVS---RDGRYITTA----DGS  208 (350)
Q Consensus       145 --~~~v~~~~~~~~~~~~~~s~~------~dg~i~iwd~~~~~~~~~~~~~~~-v~~~~~~---~~~~~l~~~----~~~  208 (350)
                        ...|......++...+++.|-      -.|.+.+|.++.+.. +.+.++.. ...+...   +...+++-+    .++
T Consensus       148 L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~  226 (1630)
T 1xi4_A          148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG  226 (1630)
T ss_pred             cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCc
Confidence              344555555555555555543      236788887765432 12222211 1111111   111222211    246


Q ss_pred             cEEEEECCCc----ceee----eeecCC-----CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEE
Q 018784          209 SVKFWDANHF----GLVK----GYNMPC-----NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHC  275 (350)
Q Consensus       209 ~i~vwd~~~~----~~~~----~~~~~~-----~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~  275 (350)
                      .+++.++...    ....    ...++.     .+.....++.. .++..-+.-|.|++||+.+|..+..-+--..+|..
T Consensus       227 kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~-g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~  305 (1630)
T 1xi4_A          227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV  305 (1630)
T ss_pred             eEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecccc-CEEEEEecCceEEEEecccchhhhhccccCCceEE
Confidence            7888887543    1111    011111     12223333333 34445567899999999999988766555666666


Q ss_pred             EEEcCCCCEEEEecCCCcEEEecCC
Q 018784          276 VRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       276 l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      .+..+...-++.....|.|.--.++
T Consensus       306 ~~~~~~~~g~~~vnr~G~vl~v~v~  330 (1630)
T 1xi4_A          306 TAPHEATAGIIGVNRKGQVLSVCVE  330 (1630)
T ss_pred             eccCCCCCceEEEcCCceEEEEEEc
Confidence            6555443344444566666555443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.99  E-value=1.5  Score=42.44  Aligned_cols=191  Identities=8%  Similarity=-0.019  Sum_probs=95.6

Q ss_pred             CccEEEEEeCC----CCeeEeeCCCCceeeec-c-----CccC--CeEEEEECCCCcEEEEeeCCC------eEEEeeCC
Q 018784           30 DGFFLVSASKD----SSPMLRNGETGDWIGTF-E-----GHKG--AVWSCCLDANALFSASGSADF------TAKLWDAL   91 (350)
Q Consensus        30 dg~~lasgs~d----~~v~iw~~~~~~~~~~l-~-----gH~~--~V~~v~~~~~~~~l~s~s~Dg------~v~vWd~~   91 (350)
                      ++.+++.|+.+    ..+.+||..+.++...- .     ....  .-.++.+..++.+++.||.++      .+.++|..
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~  476 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK  476 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence            56677777754    34678888887765422 1     1111  112223322667777776543      46777876


Q ss_pred             CCCeeee--eeccccEeEEEEcCCCCeEEEeeCCC--eEEEEECCCCCCCCee----ecCCCCcEEEEEEeCCCCcEEEE
Q 018784           92 TGDEKHS--FEHKHIVRACAFSEDTHLLLTGGFEK--ILRIFDLNRPDAPPRE----VGNSSGSIRTVAWLHSDQTILSS  163 (350)
Q Consensus        92 ~~~~~~~--~~h~~~V~~~~~~~~~~~l~sg~~d~--~v~vwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~s  163 (350)
                      +..-...  +.....-.+++.-.++.+++.||.++  .+.+||+.+.......    ..........+.+....+.+++.
T Consensus       477 t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~  556 (695)
T 2zwa_A          477 TREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIIL  556 (695)
T ss_dssp             TTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEE
T ss_pred             CCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEE
Confidence            6532111  11111112333324778888887654  6888988653211100    00011111223333333566666


Q ss_pred             EeC--C-----CeEEEEECCCCce-----eEeec----CCCCeEEEEEecCCcEEEEEc---------CCcEEEEECCCc
Q 018784          164 CTD--S-----GGVRLWDARSGKI-----VQTLE----TKSPVTSAEVSRDGRYITTAD---------GSSVKFWDANHF  218 (350)
Q Consensus       164 ~~~--d-----g~i~iwd~~~~~~-----~~~~~----~~~~v~~~~~~~~~~~l~~~~---------~~~i~vwd~~~~  218 (350)
                      |+.  +     +.+.+||+.+.+-     ...+.    ....-.++....++++++.+.         ...+.+||+.+.
T Consensus       557 GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~  636 (695)
T 2zwa_A          557 GGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE  636 (695)
T ss_dssp             CCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred             CCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence            654  2     4688999987761     11111    111112233344356554432         235899998876


Q ss_pred             ce
Q 018784          219 GL  220 (350)
Q Consensus       219 ~~  220 (350)
                      ..
T Consensus       637 ~W  638 (695)
T 2zwa_A          637 TL  638 (695)
T ss_dssp             EE
T ss_pred             eE
Confidence            44

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.95  E-value=1  Score=36.65  Aligned_cols=137  Identities=9%  Similarity=-0.039  Sum_probs=72.6

Q ss_pred             CCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeecccc--------EeEEEEcCCCCeEEEeeCCCeEEEEECCC
Q 018784           62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI--------VRACAFSEDTHLLLTGGFEKILRIFDLNR  133 (350)
Q Consensus        62 ~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~--------V~~~~~~~~~~~l~sg~~d~~v~vwd~~~  133 (350)
                      ..+..++|+|++.+.+.  .+|.+.--+..+.....-+.....        ..++.|.|+|.+.++  .|+.|.-++..+
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            35668999999997766  667655555433222111111112        478999999987776  568887776532


Q ss_pred             CCCCC-----eeecC-CCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCce------eEeec--CCCCeEEEEEecCC
Q 018784          134 PDAPP-----REVGN-SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI------VQTLE--TKSPVTSAEVSRDG  199 (350)
Q Consensus       134 ~~~~~-----~~~~~-~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~------~~~~~--~~~~v~~~~~~~~~  199 (350)
                      .....     ..++. .=..+..+.+. +++.+.+..  |+.+.-+...++..      ...+.  .......+.|.+++
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~-p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G  193 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFH-PNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG  193 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEEC-TTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred             CCCCceeccccEeccCCCCceEEEEEC-CCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence            22111     11111 11345566555 455555554  66654443332210      11111  11234456688888


Q ss_pred             cEEEEE
Q 018784          200 RYITTA  205 (350)
Q Consensus       200 ~~l~~~  205 (350)
                      .+.+..
T Consensus       194 ~l~~v~  199 (236)
T 1tl2_A          194 TLFGVQ  199 (236)
T ss_dssp             CEEEEE
T ss_pred             cEEEEe
Confidence            877666

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.86  E-value=2.1  Score=38.52  Aligned_cols=107  Identities=14%  Similarity=0.194  Sum_probs=69.1

Q ss_pred             cEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCe-------------eecC----CCCcEEEEEEeCCC--CcEEEEE
Q 018784          104 IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR-------------EVGN----SSGSIRTVAWLHSD--QTILSSC  164 (350)
Q Consensus       104 ~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~-------------~~~~----~~~~v~~~~~~~~~--~~~~~s~  164 (350)
                      .+..+..+|+|++||..+ +..|.|-.+..+.....             ..+.    ....|..+.|.|-.  +..++.-
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            467799999999988775 56889988873321111             1111    24679999998753  3477777


Q ss_pred             eCCCeEEEEECCCC--ceeEeecC----------CCCeEEEEEecCCcEE-EEE--cCCcEEE
Q 018784          165 TDSGGVRLWDARSG--KIVQTLET----------KSPVTSAEVSRDGRYI-TTA--DGSSVKF  212 (350)
Q Consensus       165 ~~dg~i~iwd~~~~--~~~~~~~~----------~~~v~~~~~~~~~~~l-~~~--~~~~i~v  212 (350)
                      ..|++|++||+...  ++. .+..          ...+.+++|.+++-.| +..  .+|.|.-
T Consensus       146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            89999999999752  222 3321          1467888998876433 322  4555543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=94.85  E-value=1.3  Score=36.07  Aligned_cols=101  Identities=13%  Similarity=-0.012  Sum_probs=62.2

Q ss_pred             CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCe--------EEEEECCCCcEEEEeeCCCeEEEe
Q 018784           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAV--------WSCCLDANALFSASGSADFTAKLW   88 (350)
Q Consensus        17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V--------~~v~~~~~~~~l~s~s~Dg~v~vW   88 (350)
                      ..+..++|+|   +|.+-+.  .++.+.-.+..+.....-+. -...|        .++.|++++.+.++  .||.|.-|
T Consensus        41 ~~~~~laf~P---~G~LYaV--~~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~  112 (236)
T 1tl2_A           41 SNFKFLFLSP---GGELYGV--LNDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKA  112 (236)
T ss_dssp             TTCSEEEECT---TSCEEEE--ETTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEE
T ss_pred             ccceeEEECC---CccEEEE--eCCeEEEECCCCCCcccccc-cccEecccccccceEEEECCCCCEEEe--CCCEEEEe
Confidence            4777999997   8887776  55665444443311110011 01222        57889999999887  67999888


Q ss_pred             eCCCCCeee-----eeecc---ccEeEEEEcCCCCeEEEeeCCCeEE
Q 018784           89 DALTGDEKH-----SFEHK---HIVRACAFSEDTHLLLTGGFEKILR  127 (350)
Q Consensus        89 d~~~~~~~~-----~~~h~---~~V~~~~~~~~~~~l~sg~~d~~v~  127 (350)
                      +..+.....     ..-..   ..+..|.|.|+|.+-+..  |+.+.
T Consensus       113 ~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          113 SPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             SCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             CCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence            864432211     11111   457999999999876666  66643

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.78  E-value=1.9  Score=37.72  Aligned_cols=221  Identities=13%  Similarity=0.158  Sum_probs=116.1

Q ss_pred             CCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeee--e-----eccccEeEEEEcCC---CCeEEEe---eCCCeEEE
Q 018784           62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS--F-----EHKHIVRACAFSED---THLLLTG---GFEKILRI  128 (350)
Q Consensus        62 ~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~--~-----~h~~~V~~~~~~~~---~~~l~sg---~~d~~v~v  128 (350)
                      ..-+.+++.+++.++++--..|.|++++...+.....  +     ........++|+|+   +..|+..   ..+..|.-
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            4457899999999988876689999998655543221  1     12346789999995   3444432   23455666


Q ss_pred             EECCCCC-----C-CCe----ee---cCCCCcEEEEEEeCCCCcEEEEEeC-------------CCeEEEEECCCC----
Q 018784          129 FDLNRPD-----A-PPR----EV---GNSSGSIRTVAWLHSDQTILSSCTD-------------SGGVRLWDARSG----  178 (350)
Q Consensus       129 wd~~~~~-----~-~~~----~~---~~~~~~v~~~~~~~~~~~~~~s~~~-------------dg~i~iwd~~~~----  178 (350)
                      |.+....     . ..+    ..   ..|.  ...++|.+ ++.++++.++             -|+|.-.+....    
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~  188 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG  188 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence            6654311     0 011    11   1122  33567765 4456655432             244444444321    


Q ss_pred             -----ceeEeecCCCCeEEEEEecCCcEEEEEcC--C--cEEEEECC-Ccce--ee------ee-----ecC-C--CCce
Q 018784          179 -----KIVQTLETKSPVTSAEVSRDGRYITTADG--S--SVKFWDAN-HFGL--VK------GY-----NMP-C--NTES  232 (350)
Q Consensus       179 -----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~--~i~vwd~~-~~~~--~~------~~-----~~~-~--~~~~  232 (350)
                           ..+... .......++|+|+|.+.++-.+  +  .|...... .+..  ..      .+     ... .  ....
T Consensus       189 nPf~~~~i~a~-G~RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G  267 (347)
T 3das_A          189 NPFPGSPVYSY-GHRNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSG  267 (347)
T ss_dssp             CSSTTCCEEEB-CCSBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEE
T ss_pred             CCCCCCeEEee-CCCCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcc
Confidence                 111111 2223457889998888776542  2  23333211 1100  00      00     000 0  1112


Q ss_pred             eEecCCCCcEEEEecCCCeEEEEEcccCee----EEeecCCCcCEEEEEEcCCCCEEEEe
Q 018784          233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ----IGCNKGHHGPVHCVRFSPGGESYASG  288 (350)
Q Consensus       233 ~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~----~~~~~~h~~~v~~l~~sp~~~~lasg  288 (350)
                      +.+.  .+.+|+..-..+.|....+.....    ...+.+....+..|+..|||.++++-
T Consensus       268 ~~~~--~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t  325 (347)
T 3das_A          268 IAYA--EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT  325 (347)
T ss_dssp             EEEE--TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred             eEEE--cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence            2232  356777766777777777765432    23344555679999999999876653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.46  E-value=2.3  Score=37.23  Aligned_cols=55  Identities=20%  Similarity=0.201  Sum_probs=37.2

Q ss_pred             CCcEEEEecCCCeEEEEEcccCeeEEe---ecCCCcCEEEEEEcCCCCEEEEe-cCCCc
Q 018784          239 LGNIFIAGGEDMWVHVFDFHTGEQIGC---NKGHHGPVHCVRFSPGGESYASG-SEDGT  293 (350)
Q Consensus       239 ~~~~l~sg~~d~~i~v~d~~~~~~~~~---~~~h~~~v~~l~~sp~~~~lasg-s~Dg~  293 (350)
                      .+.++++....+.|...++..+..+..   +......+..+++.|||.++++. ..+|.
T Consensus       288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~  346 (353)
T 2g8s_A          288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGE  346 (353)
T ss_dssp             TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEE
T ss_pred             CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCE
Confidence            467788877788888888876543322   22334578999999999877643 34453

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.17  E-value=4.3  Score=39.21  Aligned_cols=189  Identities=12%  Similarity=0.078  Sum_probs=91.4

Q ss_pred             CCCcEEEEeeCC----CeEEEeeCCCCCeeeee--------eccccEeEEEEcC-CCCeEEEeeCCC------eEEEEEC
Q 018784           71 ANALFSASGSAD----FTAKLWDALTGDEKHSF--------EHKHIVRACAFSE-DTHLLLTGGFEK------ILRIFDL  131 (350)
Q Consensus        71 ~~~~~l~s~s~D----g~v~vWd~~~~~~~~~~--------~h~~~V~~~~~~~-~~~~l~sg~~d~------~v~vwd~  131 (350)
                      .++.+++.||.+    ..+.++|..++.-...-        .....-.+++..+ ++.+++.||.++      .+.+||+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456666667654    45777887766422211        1111112333333 677777777543      4778887


Q ss_pred             CCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC--eEEEEECCCCceeEeecC------C-CCeEEEEEecC-CcE
Q 018784          132 NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLET------K-SPVTSAEVSRD-GRY  201 (350)
Q Consensus       132 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~iwd~~~~~~~~~~~~------~-~~v~~~~~~~~-~~~  201 (350)
                      .+..............-.+++... ++.+++.|+.++  .+.+||+.+.+= ..+..      . .....+.+..+ +++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~-~~~iyv~GG~~~~~~v~~yd~~t~~W-~~~~~~g~~p~~r~~~~a~v~~~~~~~i  553 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLP-DGNVLILGGVTEGPAMLLYNVTEEIF-KDVTPKDEFFQNSLVSAGLEFDPVSKQG  553 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECT-TSCEEEECCBCSSCSEEEEETTTTEE-EECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEc-CCEEEEECCCCCCCCEEEEECCCCce-EEccCCCCCCCcccceeEEEEeCCCCEE
Confidence            653211000000000011122222 556666666543  689999987642 11111      1 11222444544 555


Q ss_pred             EEEE-c--C-----CcEEEEECCCcc------eeeeeecC-CCCceeEecCCC-CcEEEEecCC--------CeEEEEEc
Q 018784          202 ITTA-D--G-----SSVKFWDANHFG------LVKGYNMP-CNTESASLEPKL-GNIFIAGGED--------MWVHVFDF  257 (350)
Q Consensus       202 l~~~-~--~-----~~i~vwd~~~~~------~~~~~~~~-~~~~~~~~~~~~-~~~l~sg~~d--------~~i~v~d~  257 (350)
                      ++.+ .  +     ..+.+||+.+..      .......+ ............ +.+++.|+.+        ..+.+||+
T Consensus       554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~  633 (695)
T 2zwa_A          554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDP  633 (695)
T ss_dssp             EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEET
T ss_pred             EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEEC
Confidence            5543 2  1     358889987765      11111111 111111111123 6888888843        45899998


Q ss_pred             ccCe
Q 018784          258 HTGE  261 (350)
Q Consensus       258 ~~~~  261 (350)
                      .+.+
T Consensus       634 ~t~~  637 (695)
T 2zwa_A          634 LSET  637 (695)
T ss_dssp             TTTE
T ss_pred             CCCe
Confidence            7654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.53  E-value=4.3  Score=36.98  Aligned_cols=110  Identities=12%  Similarity=0.133  Sum_probs=62.8

Q ss_pred             ceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCcee--eeccC------ccCCeEEEEECC----CCcE
Q 018784            8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI--GTFEG------HKGAVWSCCLDA----NALF   75 (350)
Q Consensus         8 ~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~--~~l~g------H~~~V~~v~~~~----~~~~   75 (350)
                      +-.+..+ -...+.++|.|   +|+++++-...+.|++++..+++..  ..+..      .......++++|    ++.+
T Consensus        19 ~~~~a~~-l~~P~~~a~~p---dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~l   94 (454)
T 1cru_A           19 KKVILSN-LNKPHALLWGP---DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYI   94 (454)
T ss_dssp             EEEEECC-CSSEEEEEECT---TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEE
T ss_pred             EEEEECC-CCCceEEEEcC---CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEE
Confidence            3334344 33456898886   9998887554456887776555432  22321      245678899998    4555


Q ss_pred             EEEeeC------------CCeEEEeeCCCCC-----eeeee---e--ccccEeEEEEcCCCCeEEEee
Q 018784           76 SASGSA------------DFTAKLWDALTGD-----EKHSF---E--HKHIVRACAFSEDTHLLLTGG  121 (350)
Q Consensus        76 l~s~s~------------Dg~v~vWd~~~~~-----~~~~~---~--h~~~V~~~~~~~~~~~l~sg~  121 (350)
                      .++-+.            ...|.-++.....     ....+   .  .......++|.|+|.+.++.+
T Consensus        95 Yv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A           95 YISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             EEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             EEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence            555432            1244445443211     11111   1  123468899999998777644

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=93.25  E-value=3.7  Score=35.91  Aligned_cols=102  Identities=17%  Similarity=0.105  Sum_probs=57.2

Q ss_pred             cEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCC-CCe----eecCCCCcEEEEEEeCC---CCcEEEEEeC-------CC
Q 018784          104 IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA-PPR----EVGNSSGSIRTVAWLHS---DQTILSSCTD-------SG  168 (350)
Q Consensus       104 ~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-~~~----~~~~~~~~v~~~~~~~~---~~~~~~s~~~-------dg  168 (350)
                      ....++|.|+|..|+.+...+.|++++...... ...    ......+....+++.++   ++.++++-..       ..
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~   98 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT   98 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence            468999999998344556678999998532111 000    11122345678888764   5666665433       23


Q ss_pred             eEEEEECCCC--c-----ee-EeecC----CCCeEEEEEecCCcEEEEE
Q 018784          169 GVRLWDARSG--K-----IV-QTLET----KSPVTSAEVSRDGRYITTA  205 (350)
Q Consensus       169 ~i~iwd~~~~--~-----~~-~~~~~----~~~v~~~~~~~~~~~l~~~  205 (350)
                      .|..++....  +     .+ ..+..    ......+.|.|+|.++++.
T Consensus        99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  147 (353)
T 2g8s_A           99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL  147 (353)
T ss_dssp             EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred             EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence            4666665432  1     11 11111    1123569999999776664

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=92.77  E-value=0.3  Score=42.74  Aligned_cols=108  Identities=15%  Similarity=0.188  Sum_probs=68.7

Q ss_pred             EEEEEeCCCeEEEEECCCCceeEeecCC--CCeEEEEEe---cCCcEEEE--EcCCcEEEEECCCcceeeeeecCCCCce
Q 018784          160 ILSSCTDSGGVRLWDARSGKIVQTLETK--SPVTSAEVS---RDGRYITT--ADGSSVKFWDANHFGLVKGYNMPCNTES  232 (350)
Q Consensus       160 ~~~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~---~~~~~l~~--~~~~~i~vwd~~~~~~~~~~~~~~~~~~  232 (350)
                      +++.++.||.|.-.|..+|+.+..++..  .+.....-.   .++..++.  ..+|.+..++..++.....+..+.....
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~   91 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST   91 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence            4666788999999999999999888764  332221100   12334444  3678888888877644433333211111


Q ss_pred             --eEec--C--------CCCcEEEEecCCCeEEEEEcccCeeEEeec
Q 018784          233 --ASLE--P--------KLGNIFIAGGEDMWVHVFDFHTGEQIGCNK  267 (350)
Q Consensus       233 --~~~~--~--------~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~  267 (350)
                        +...  |        ..+..+.+|+.++++...|+.+|+.+-.+.
T Consensus        92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~  138 (339)
T 2be1_A           92 SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG  138 (339)
T ss_dssp             CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred             cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence              1100  0        135788899999999999999999876664

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.16  E-value=1.5  Score=40.87  Aligned_cols=106  Identities=10%  Similarity=0.134  Sum_probs=68.0

Q ss_pred             eeccccEeEEEEcCCCCeEEEee-CCCeEEEEECCCC------CC-----CCeeecCCCCcEEEEEEeCCCCcEEEEEeC
Q 018784           99 FEHKHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRP------DA-----PPREVGNSSGSIRTVAWLHSDQTILSSCTD  166 (350)
Q Consensus        99 ~~h~~~V~~~~~~~~~~~l~sg~-~d~~v~vwd~~~~------~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~  166 (350)
                      +.-......+.++|||++++.++ -+.++.++|..+-      ..     .........-.....+|.+ ++....+..-
T Consensus       319 iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~-~G~aYTtlfi  397 (638)
T 3sbq_A          319 VPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG-RGNAYTTLFI  397 (638)
T ss_dssp             EEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETT
T ss_pred             EeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC-CCceEeeeee
Confidence            34455677899999999887655 5889999998631      11     0000111222355667765 4567778889


Q ss_pred             CCeEEEEECCCC----------ceeEeecCCCCeEEEEE------ecCCcEEEEE
Q 018784          167 SGGVRLWDARSG----------KIVQTLETKSPVTSAEV------SRDGRYITTA  205 (350)
Q Consensus       167 dg~i~iwd~~~~----------~~~~~~~~~~~v~~~~~------~~~~~~l~~~  205 (350)
                      |..|.-|++...          ..+..+..+-.+-.+..      .++|++|++.
T Consensus       398 dSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~l  452 (638)
T 3sbq_A          398 DSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVAL  452 (638)
T ss_dssp             TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEE
T ss_pred             cceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEe
Confidence            999999998653          34555555555545544      4688998875

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=92.04  E-value=5.8  Score=34.68  Aligned_cols=195  Identities=13%  Similarity=0.084  Sum_probs=101.5

Q ss_pred             CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc-eeeecc---CccCCeEEEEECCC----CcEEEEeeC---C---
Q 018784           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-WIGTFE---GHKGAVWSCCLDAN----ALFSASGSA---D---   82 (350)
Q Consensus        17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~-~~~~l~---gH~~~V~~v~~~~~----~~~l~s~s~---D---   82 (350)
                      ...+.++|.|   ||+++++ ..++.|++++ .+++ .+..+.   .-......++++|+    +.+.++-+.   +   
T Consensus        29 ~~P~~ia~~p---dG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           29 EVPWSIAPLG---GGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             SCEEEEEEEE---TTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred             CCCeEEEEcC---CCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence            3456888887   8986665 5558888887 3454 222221   12345788999997    555555432   3   


Q ss_pred             -CeEEEeeCCCC--C---eeee---ee--ccccEeEEEEcCCCCeEEEeeC-------------CCeEEEEECCCCCCC-
Q 018784           83 -FTAKLWDALTG--D---EKHS---FE--HKHIVRACAFSEDTHLLLTGGF-------------EKILRIFDLNRPDAP-  137 (350)
Q Consensus        83 -g~v~vWd~~~~--~---~~~~---~~--h~~~V~~~~~~~~~~~l~sg~~-------------d~~v~vwd~~~~~~~-  137 (350)
                       ..|..|+....  .   ....   +.  .......++|.|+|.+.++-+.             .+.|.-++.+. ..+ 
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~  182 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG-RPPA  182 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCT
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC-CCCC
Confidence             56667765443  1   1111   11  1123467999999987776442             14555555532 110 


Q ss_pred             ------CeeecCCCCcEEEEEEeCCCCcEEEEEeCCC---eEEEEECCC--------C--------ceeEee-cCCCCeE
Q 018784          138 ------PREVGNSSGSIRTVAWLHSDQTILSSCTDSG---GVRLWDARS--------G--------KIVQTL-ETKSPVT  191 (350)
Q Consensus       138 ------~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg---~i~iwd~~~--------~--------~~~~~~-~~~~~v~  191 (350)
                            .............++|.+.++.++++-...+   .|.+.....        +        .++..+ .......
T Consensus       183 ~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~  262 (354)
T 3a9g_A          183 DNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS  262 (354)
T ss_dssp             TSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred             CCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence                  1111111122446777764555555432221   233332110        0        122233 2234566


Q ss_pred             EEEEe-------cCCcEEEEEc-CCcEEEEECCC
Q 018784          192 SAEVS-------RDGRYITTAD-GSSVKFWDANH  217 (350)
Q Consensus       192 ~~~~~-------~~~~~l~~~~-~~~i~vwd~~~  217 (350)
                      .+.|.       .+|.++++.. .+.|...++..
T Consensus       263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~  296 (354)
T 3a9g_A          263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD  296 (354)
T ss_dssp             EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred             ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence            77773       4677776654 45677777764

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=92.03  E-value=9.4  Score=37.08  Aligned_cols=266  Identities=12%  Similarity=0.034  Sum_probs=140.6

Q ss_pred             eeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeee
Q 018784           19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS   98 (350)
Q Consensus        19 v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~   98 (350)
                      |.++...+   ++..|-.|+. +-+..++..+++......-....|.++....++.+.+..  ++-+.+++..+......
T Consensus       193 i~~i~~d~---~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT--~~Gl~~~~~~~~~~~~~  266 (758)
T 3ott_A          193 VNSLLEDT---TRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT--DNGLYVYHNDTTPLQHI  266 (758)
T ss_dssp             EEEEEEET---TTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE--TTEEEEECCTTSCCEEE
T ss_pred             eEEEEEEC---CCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe--CCceeEEecCCCcEEEE
Confidence            66665543   4544333443 347778877665432111123458888888888887654  34577888765543222


Q ss_pred             ee--------ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee-------cCCCCcEEEEEEeCCCCcEEEE
Q 018784           99 FE--------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV-------GNSSGSIRTVAWLHSDQTILSS  163 (350)
Q Consensus        99 ~~--------h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~s  163 (350)
                      ..        ..+.|.++....++.+ ..|...| +.++....   .....       ......|.++... .++.+.+.
T Consensus       267 ~~~~~~~~~l~~~~i~~i~~D~~g~l-WiGT~~G-l~~~~~~~---~~~~~~~~~~~~~~~~~~v~~i~~D-~~g~lWiG  340 (758)
T 3ott_A          267 IHDSRNIQSLTNNIIWNIFADQEHNI-WLGTDYG-ISLSRYNS---ALQFIPISQITGTGDGNQFYSLFRD-SKGFYWFG  340 (758)
T ss_dssp             CCCTTCTTSCSCSCEEEEEECTTCCE-EEEESSS-EEEECCCC----CEEEEHHHHSCSCCCCBEEEEEEC-TTCCEEEE
T ss_pred             EcCCCCcCcCCcCeEEEEEEcCCCCE-EEEeCCc-ccccccCC---ceeEEecccCCCCCCCceEEEEEEc-CCCCEEEe
Confidence            11        1245888887777764 4455556 44443221   11111       0123457776543 34444443


Q ss_pred             EeCCCeEEEEECCCCc--eeEeec--------CCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeec-CC----
Q 018784          164 CTDSGGVRLWDARSGK--IVQTLE--------TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM-PC----  228 (350)
Q Consensus       164 ~~~dg~i~iwd~~~~~--~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~-~~----  228 (350)
                       +.+ .+..++..+++  ....+.        ....|.++....++++.++. ++.+..||..+..... +.. ..    
T Consensus       341 -t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~-~~~~~~~~~~  416 (758)
T 3ott_A          341 -GAN-GLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIH-YNIVDNTGTY  416 (758)
T ss_dssp             -ETT-EEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEE-EEEECCC--C
T ss_pred             -eCC-cceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEE-eecCCCcCCC
Confidence             444 56677765532  111111        12357888888888877766 4578999987654322 211 00    


Q ss_pred             -CCceeEecCCCCcEEEEecCCCeEEEEEcccC-----eeEE---ee---cCC-CcCEEEEEEcCCCCEEEEecCCCcEE
Q 018784          229 -NTESASLEPKLGNIFIAGGEDMWVHVFDFHTG-----EQIG---CN---KGH-HGPVHCVRFSPGGESYASGSEDGTIR  295 (350)
Q Consensus       229 -~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~-----~~~~---~~---~~h-~~~v~~l~~sp~~~~lasgs~Dg~v~  295 (350)
                       ......+..+....|..|+..+-|.++|..+.     ....   .+   .+- ...|.++...++|.+.+.++..+-|.
T Consensus       417 ~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~  496 (758)
T 3ott_A          417 NTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGID  496 (758)
T ss_dssp             BSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEE
T ss_pred             CCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcE
Confidence             11112222222344555676666888886531     1111   11   111 23589999988888766333334466


Q ss_pred             EecCC
Q 018784          296 IWQTN  300 (350)
Q Consensus       296 vw~~~  300 (350)
                      .+|..
T Consensus       497 ~~d~~  501 (758)
T 3ott_A          497 KINPR  501 (758)
T ss_dssp             EEETT
T ss_pred             EEeCC
Confidence            67654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=90.37  E-value=10  Score=34.45  Aligned_cols=58  Identities=10%  Similarity=0.009  Sum_probs=37.7

Q ss_pred             CeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeee--ee-------ccccEeEEEEcCC---CCeEEEe
Q 018784           63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS--FE-------HKHIVRACAFSED---THLLLTG  120 (350)
Q Consensus        63 ~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~--~~-------h~~~V~~~~~~~~---~~~l~sg  120 (350)
                      .-+.++|.+++.++++-...+.|++++..++.....  +.       .......++|+|+   +..|+..
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~   97 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYIS   97 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEE
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEE
Confidence            446899999999988765445788887655543221  11       1345679999995   4445443

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=88.44  E-value=17  Score=36.60  Aligned_cols=37  Identities=16%  Similarity=0.058  Sum_probs=31.1

Q ss_pred             CeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee
Q 018784           63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF   99 (350)
Q Consensus        63 ~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~   99 (350)
                      .+.+++..++..+++|-+.|+++|||++.++.+..+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4566777788889999999999999999998877654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=82.98  E-value=35  Score=32.98  Aligned_cols=269  Identities=11%  Similarity=0.055  Sum_probs=141.1

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeecc-------CccCCeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-------GHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~-------gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~   90 (350)
                      .|.++...+   +|.+.+ |+. +-+.+++..+++......       -....|+++..+.++.+-+.. ..| +.+...
T Consensus       233 ~i~~i~~d~---~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT-~~G-l~~~~~  305 (758)
T 3ott_A          233 SIKSLALDG---NGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGT-DYG-ISLSRY  305 (758)
T ss_dssp             EEEEEEECT---TCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEE-SSS-EEEECC
T ss_pred             eEEEEEEcC---CCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEe-CCc-cccccc
Confidence            355565443   565554 444 346777776655432111       023468999988888776644 335 444432


Q ss_pred             CCCCeeeeee------ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCC-CCeeec-------CCCCcEEEEEEeCC
Q 018784           91 LTGDEKHSFE------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA-PPREVG-------NSSGSIRTVAWLHS  156 (350)
Q Consensus        91 ~~~~~~~~~~------h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-~~~~~~-------~~~~~v~~~~~~~~  156 (350)
                      ...-......      ....|.++.-..+|.+- .|..+| +..++..+... ......       -....|.++.-.. 
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lW-iGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-  382 (758)
T 3ott_A          306 NSALQFIPISQITGTGDGNQFYSLFRDSKGFYW-FGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDK-  382 (758)
T ss_dssp             CC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEE-EEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECT-
T ss_pred             CCceeEEecccCCCCCCCceEEEEEEcCCCCEE-EeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECC-
Confidence            1111111110      12458888777777644 445554 55565443211 111110       1124577775433 


Q ss_pred             CCcEEEEEeCCCeEEEEECCCCceeEee--c-----CCCCeEEEEEecCCcEEEEEcCCcEEEEECCCc-----cee---
Q 018784          157 DQTILSSCTDSGGVRLWDARSGKIVQTL--E-----TKSPVTSAEVSRDGRYITTADGSSVKFWDANHF-----GLV---  221 (350)
Q Consensus       157 ~~~~~~s~~~dg~i~iwd~~~~~~~~~~--~-----~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~-----~~~---  221 (350)
                      ++.+.+ |+. +-|..+|.++++.....  .     ....+.++...+++.+.++..++.+.++|..+.     ...   
T Consensus       383 ~g~lWi-gt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~  460 (758)
T 3ott_A          383 EQQLWI-ATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAE  460 (758)
T ss_dssp             TSCEEE-EET-TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECS
T ss_pred             CCCEEE-EeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecc
Confidence            344444 343 57999998877543321  1     123577888888888888776667888885431     111   


Q ss_pred             eeee----cCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec-C--CCcCEEEEEEcCCCCEEEEecCCCcE
Q 018784          222 KGYN----MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK-G--HHGPVHCVRFSPGGESYASGSEDGTI  294 (350)
Q Consensus       222 ~~~~----~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~-~--h~~~v~~l~~sp~~~~lasgs~Dg~v  294 (350)
                      ..+.    ++............+++.+.++..+-|..+|..+++...... .  ....+.++....+|.+.+. +..| |
T Consensus       461 ~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l  538 (758)
T 3ott_A          461 QNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-V  538 (758)
T ss_dssp             EEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-E
T ss_pred             cccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-e
Confidence            1111    111112222333456766644444558888987765443221 1  1346788888888876654 4455 6


Q ss_pred             EEecCC
Q 018784          295 RIWQTN  300 (350)
Q Consensus       295 ~vw~~~  300 (350)
                      ..++..
T Consensus       539 ~~~~~~  544 (758)
T 3ott_A          539 MRINPK  544 (758)
T ss_dssp             EEECC-
T ss_pred             EEEecC
Confidence            666643

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=81.27  E-value=23  Score=29.67  Aligned_cols=223  Identities=13%  Similarity=0.060  Sum_probs=110.6

Q ss_pred             CeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee-eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee
Q 018784           63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEKH-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV  141 (350)
Q Consensus        63 ~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~-~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~  141 (350)
                      .|..++......+++  . ||.|..|-....-.+. .......|..++...+...++  . |+.|..|-......... .
T Consensus        25 ~i~~ia~G~~h~~~l--~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l--~-~G~v~~wG~n~~Gqlg~-P   97 (282)
T 3qhy_B           25 GVDAIAGGYFHGLAL--K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL--K-DGEVIAWGGNEDGQTTV-P   97 (282)
T ss_dssp             SCCEEEECSSEEEEE--E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE--E-TTEEEEEECCTTSTTCC-C
T ss_pred             CCcEEEeCCCeEEEE--E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE--E-CCEEEEeeCCCCCCCCC-C
Confidence            465666554433333  3 8999999754322111 111223566776655444333  4 89999997654322111 1


Q ss_pred             cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCC-CceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcce
Q 018784          142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS-GKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGL  220 (350)
Q Consensus       142 ~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~  220 (350)
                      ......|..++.-. ...+++  . ||.|..|-... ++.-........+..++.-.+..++..  ++.|..|-......
T Consensus        98 ~~~~~~v~~ia~G~-~hs~al--~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~--~G~v~~wG~n~~gq  171 (282)
T 3qhy_B           98 AEARSGVDAIAAGA-WASYAL--K-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK--NGGVIAWGDNYFGQ  171 (282)
T ss_dssp             GGGSSSEEEEEEET-TEEEEE--E-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEE--TTEEEEEECCTTST
T ss_pred             cccCCCeEEEECcC-CEEEEE--e-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEE--CCEEEEecCCCCCC
Confidence            11134677777542 222333  4 79999997644 332112222345666655544444333  68888887654332


Q ss_pred             eeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          221 VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      +.. ..........+..-....++.  .|+.|+.|-....-++.....-...|..++....-.++++   ||.|+.|-..
T Consensus       172 lg~-p~~~~~~v~~i~~G~~hs~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~---~g~v~~wG~n  245 (282)
T 3qhy_B          172 TTV-PAEAQSGVDDVAGGIFHSLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK---NGKVIAWGSS  245 (282)
T ss_dssp             TSC-CGGGGSSEEEEEECSSEEEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE---TTEEEEESTT
T ss_pred             CCC-ceecCCCeEEEEecCCEEEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE---CCEEEEecCC
Confidence            210 000001111111111233444  4888888865432222111111235777777554333333   9999999765


Q ss_pred             CCCc
Q 018784          301 PPNH  304 (350)
Q Consensus       301 ~~~~  304 (350)
                      ...+
T Consensus       246 ~~gq  249 (282)
T 3qhy_B          246 RTAP  249 (282)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            4433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	350
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-33
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-30
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-28
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-19
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-21
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-12
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-21
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-12
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-17
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-14
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-15
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-14
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-13
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-14
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.002
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-14
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.004
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-14
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-14
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-14
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-13
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	9e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-12
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-11
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-12
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-10
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-05
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	6e-12
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	5e-08
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-07
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-12
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-10
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-10
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-10
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.001
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-09
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-08
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.003
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-08
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-06
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	2e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.001

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  124 bits (312), Expect = 1e-33
 Identities = 52/291 (17%), Positives = 100/291 (34%), Gaps = 11/291 (3%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
           GH   +  + +     D   LVSAS+D   ++ +  T + +         V +C    + 
Sbjct: 53  GHLAKIYAMHWGT---DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109

Query: 74  LFSASGSADFTAKLWDALTGDEKHSFEHKH---IVRACAFSEDTHLLLTGGFEKILRIFD 130
            + A G  D    +++  T +       +                  +            
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169

Query: 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSP 189
                         +G + +++     +  +S   D+   +LWD R G   QT    +S 
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS-AKLWDVREGMCRQTFTGHESD 228

Query: 190 VTSAEVSRDGRYITTA--DGSSVKFWDANHFGLVKGYNMPCNTESASLE-PKLGNIFIAG 246
           + +     +G    T   D +   F       L+   +        S+   K G + +AG
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288

Query: 247 GEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
            +D   +V+D    ++ G   GH   V C+  +  G + A+GS D  ++IW
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.3 bits (186), Expect = 3e-16
 Identities = 35/166 (21%), Positives = 69/166 (41%), Gaps = 5/166 (3%)

Query: 12  CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA 71
               +    D+    + PD    VS + D+S  L +   G    TF GH+  + + C   
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236

Query: 72  NALFSASGSADFTAKLWDALTGDEKHSFEHKHI---VRACAFSEDTHLLLTGGFEKILRI 128
           N    A+GS D T +L+D     E  ++ H +I   + + +FS+   LLL G  +    +
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNV 296

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
           +D  + D     +      +  +     D   +++ +    +++W+
Sbjct: 297 WDALKAD-RAGVLAGHDNRVSCLGV-TDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 267 KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNH 304
           +GH   ++ + +        S S+DG + IW +   N 
Sbjct: 52  RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK 89

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  115 bits (287), Expect = 3e-30
 Identities = 60/308 (19%), Positives = 122/308 (39%), Gaps = 28/308 (9%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
           GH  PV  + + P       +VSAS+D++  + + ETGD+  T +GH  +V     D + 
Sbjct: 15  GHRSPVTRVIFHP---VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71

Query: 74  LFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLN 132
              AS SAD T KLWD    +   +   H H V + +   +   +++   +K ++++++ 
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 133 RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE------- 185
                    G+       +   + D T+++SC++   VR+W   + +    L        
Sbjct: 132 TGYCVKTFTGHRE--WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189

Query: 186 --------------TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNT 230
                           +   + +  + G ++ +     ++K WD +    +       N 
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249

Query: 231 ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSE 290
               L    G   ++  +D  + V+D+     +     H   V  + F        +GS 
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309

Query: 291 DGTIRIWQ 298
           D T+++W+
Sbjct: 310 DQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.8 bits (156), Expect = 2e-12
 Identities = 44/254 (17%), Positives = 85/254 (33%), Gaps = 24/254 (9%)

Query: 86  KLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS 144
           K W      EK++   H+  V    F     ++++   +  ++++D    D   R +   
Sbjct: 1   KEWIP-RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-FERTLKGH 58

Query: 145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-T 203
           + S++ +++ HS + + S   D             I         V+S  +  +G +I +
Sbjct: 59  TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS 118

Query: 204 TADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI 263
            +   ++K W+      VK +             + G +  +   D  V V+   T E  
Sbjct: 119 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178

Query: 264 GCNKGHHGPVHCVRF--------------------SPGGESYASGSEDGTIRIWQTNPPN 303
              + H   V C+ +                       G    SGS D TI++W  +   
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238

Query: 304 HEENHSGTGNAQTG 317
                 G  N   G
Sbjct: 239 CLMTLVGHDNWVRG 252

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (276), Expect = 2e-28
 Identities = 72/344 (20%), Positives = 120/344 (34%), Gaps = 57/344 (16%)

Query: 2   DKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHK 61
            + ++  P V  GH   V+          G  +VS S D++  + +  TG  + T  GH 
Sbjct: 2   RRGELKSPKVLKGHDDHVITCL----QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHT 57

Query: 62  GAVWSCCLDANA--------------------------------------LFSASGSADF 83
           G VWS  +  N                                           SGS D 
Sbjct: 58  GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117

Query: 84  TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN 143
           T ++WD  TG   H          C   +    +++G ++ +++++D          +  
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR-VVSGAYDFMVKVWDPE----TETCLHT 172

Query: 144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT 203
             G    V  L  D   + S +    +R+WD  +G  + TL     +TS    +D   ++
Sbjct: 173 LQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVS 232

Query: 204 TADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ 262
               S+VK WD      ++    P     + +      N  I   +D  V ++D  TGE 
Sbjct: 233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF 292

Query: 263 IGC-----NKGHHGPVHCVRFSPGGESYASGSEDGT----IRIW 297
           I       + G  G V  +R S      A GS +GT    + + 
Sbjct: 293 IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.5 bits (207), Expect = 5e-19
 Identities = 48/254 (18%), Positives = 85/254 (33%), Gaps = 12/254 (4%)

Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDT 114
             +GH   V +C L        SGS D T K+W A+TG    +   H   V +    ++ 
Sbjct: 11  VLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI 69

Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
            +  +      +   +            ++      V  +H  +  + S +    +R+WD
Sbjct: 70  IISGSTDRTLKVWNAETGECIHTLYGHTST------VRCMHLHEKRVVSGSRDATLRVWD 123

Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESAS 234
             +G+ +  L               R ++ A    VK WD      +    +  +T    
Sbjct: 124 IETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH--TLQGHTNRVY 181

Query: 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTI 294
                G   ++G  D  + V+D  TG  I    GH      +          SG+ D T+
Sbjct: 182 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTV 239

Query: 295 RIWQTNPPNHEENH 308
           +IW        +  
Sbjct: 240 KIWDIKTGQCLQTL 253

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.2 bits (227), Expect = 2e-21
 Identities = 59/342 (17%), Positives = 110/342 (32%), Gaps = 51/342 (14%)

Query: 3   KRKVAVPLV-CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-- 59
            R++ V L     H+  V  + +S    DG +L +   + +  +     G  +       
Sbjct: 48  PREIDVELHKSLDHTSVVCCVKFSN---DGEYLATGC-NKTTQVYRVSDGSLVARLSDDS 103

Query: 60  ----------------HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKH 103
                               + S C   +  F A+G+ D   ++WD          +   
Sbjct: 104 AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE 163

Query: 104 IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS 163
                     +   L  G      +   +          +    + TVA    D   +++
Sbjct: 164 QDIYSLDYFPSGDKLVSGSGDR-TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA 222

Query: 164 CTDSGGVRLWDARSGKIVQTLET--------KSPVTSAEVSRDGRYITTA-DGSSVKFWD 214
            +    VR+WD+ +G +V+ L++        K  V S   +RDG+ + +     SVK W+
Sbjct: 223 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 282

Query: 215 ANHFGLVKGYNMPCNTESASLEPKL------------GNIFIAGGEDMWVHVFDFHTGEQ 262
             +         P +                          ++G +D  V  +D  +G  
Sbjct: 283 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP 342

Query: 263 IGCNKGHHGPVHCV------RFSPGGESYASGSEDGTIRIWQ 298
           +   +GH   V  V         P    +A+GS D   RIW+
Sbjct: 343 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.8 bits (187), Expect = 3e-16
 Identities = 56/318 (17%), Positives = 100/318 (31%), Gaps = 50/318 (15%)

Query: 15  HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL 74
           H     +   +   P   FL+     S P     +T D+   +           L     
Sbjct: 1   HYLVPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVEL----- 55

Query: 75  FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGG-----------FE 123
                                  S +H  +V    FS D   L TG              
Sbjct: 56  ---------------------HKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGS 94

Query: 124 KILRIFDLNRPDAPPREVGNSS-----GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG 178
            + R+ D +  +  P  +  SS       IR+V +    + + +   D            
Sbjct: 95  LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK 154

Query: 179 KIVQTLETKSPVTSAEVSRDGRYITTADGS-SVKFWDANHFGLVKGYNMPCNTESASLEP 237
            ++     +  + S +    G  + +  G  +V+ WD          ++     + ++ P
Sbjct: 155 IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSP 214

Query: 238 KLGNIFIAGGEDMWVHVFDFHTGE-------QIGCNKGHHGPVHCVRFSPGGESYASGSE 290
             G    AG  D  V V+D  TG        +     GH   V+ V F+  G+S  SGS 
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 274

Query: 291 DGTIRIWQTNPPNHEENH 308
           D ++++W     N++ + 
Sbjct: 275 DRSVKLWNLQNANNKSDS 292

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.1 bits (162), Expect = 5e-13
 Identities = 34/173 (19%), Positives = 69/173 (39%), Gaps = 26/173 (15%)

Query: 29  PDGFFLVSASKDSSPMLRNGETGDWIGTFE-------GHKGAVWSCCLDANALFSASGSA 81
            DG ++ + S D +  + + ETG  +   +       GHK +V+S     +     SGS 
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 274

Query: 82  DFTAKLWDALTGDEK-------------HSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
           D + KLW+    + K                 HK  V + A +++   +L+G  ++ +  
Sbjct: 275 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 334

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAW-----LHSDQTILSSCTDSGGVRLWDAR 176
           +D  +   P   +     S+ +VA      L  +  + ++ +     R+W  +
Sbjct: 335 WDK-KSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.4 bits (155), Expect = 4e-12
 Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 22/139 (15%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD------------WIGTFEGHK 61
           GH   V  + ++    DG  +VS S D S  L N +  +               T+ GHK
Sbjct: 252 GHKDSVYSVVFTR---DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK 308

Query: 62  GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACA------FSEDT 114
             V S     N  +  SGS D     WD  +G+     + H++ V + A         + 
Sbjct: 309 DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 368

Query: 115 HLLLTGGFEKILRIFDLNR 133
           ++  TG  +   RI+   +
Sbjct: 369 NVFATGSGDCKARIWKYKK 387

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.9 bits (221), Expect = 3e-21
 Identities = 45/298 (15%), Positives = 96/298 (32%), Gaps = 23/298 (7%)

Query: 10  LVCH-GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
           + C    S+ V  L       D   +VS  +D++  + +  T +      GH G+V    
Sbjct: 8   IHCRSETSKGVYCL-----QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ 62

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
            D   + +    +  +      +   E  +    H         +  +++T   ++ + +
Sbjct: 63  YDERVIIT---GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV 119

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
           +D               G    V  +  D   + S +    +++W+  + + V+TL    
Sbjct: 120 WD-MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 178

Query: 189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
              +    RD   ++ +  ++++ WD      ++                     ++G  
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSGAY 236

Query: 249 DMWVHVFDFHTGEQIGCN---------KGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
           D  + V+D                     H G V  ++F        S S D TI IW
Sbjct: 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (157), Expect = 1e-12
 Identities = 47/279 (16%), Positives = 88/279 (31%), Gaps = 20/279 (7%)

Query: 54  IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSE 112
           I         V+    D   +   SG  D T K+WD  T + K     H   V    + E
Sbjct: 8   IHCRSETSKGVYCLQYDDQKI--VSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL 172
                                       +         V  L  +  ++ +C+    + +
Sbjct: 66  RV------IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV 119

Query: 173 WDARSGKIVQTLET----KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPC 228
           WD  S   +         ++ V   +         + D + +K W+ +    V    +  
Sbjct: 120 WDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRT-IKVWNTSTCEFV--RTLNG 176

Query: 229 NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASG 288
           +    +       + ++G  D  + ++D   G  +   +GH   V C+RF    +   SG
Sbjct: 177 HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN--KRIVSG 234

Query: 289 SEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVT 327
           + DG I++W           +GT   +T  L   +  V 
Sbjct: 235 AYDGKIKVWDLVAALDPRAPAGTLCLRT--LVEHSGRVF 271

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (122), Expect = 4e-08
 Identities = 31/172 (18%), Positives = 64/172 (37%), Gaps = 18/172 (10%)

Query: 53  WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFS 111
                 GH+ AV     D   + SASG  D T K+W+  T +   +   HK  +    + 
Sbjct: 130 LRRVLVGHRAAVNVVDFDDKYIVSASG--DRTIKVWNTSTCEFVRTLNGHKRGIACLQYR 187

Query: 112 EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
           +   L+++G  +  +R++D+         +    G    V  +  D   + S    G ++
Sbjct: 188 D--RLVVSGSSDNTIRLWDIE----CGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIK 241

Query: 172 LWDARSGKIVQTLETKSPVTSAE--------VSRDGRYI-TTADGSSVKFWD 214
           +WD  +    +       + +          +  D   I +++   ++  WD
Sbjct: 242 VWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 7e-05
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 258 HTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
           H+ ++I C       V+C+++    +   SG  D TI+IW  N
Sbjct: 3   HSLQRIHCRSETSKGVYCLQYD--DQKIVSGLRDNTIKIWDKN 43

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 2/50 (4%)

Query: 40  DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89
            ++   R       + T   H G V+    D   +   S S D T  +WD
Sbjct: 246 VAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQI--VSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 14/112 (12%)

Query: 29  PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW 88
                +VS S D++  L + E G  +   EGH+  V     D   +   SG+ D   K+W
Sbjct: 186 YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRI--VSGAYDGKIKVW 243

Query: 89  DALTGDEKHSFE----------HKHIVRACAFSEDTHLLLTGGFEKILRIFD 130
           D +   +  +            H   V    F  D   +++   +  + I+D
Sbjct: 244 DLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (197), Expect = 1e-17
 Identities = 37/291 (12%), Positives = 73/291 (25%), Gaps = 11/291 (3%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT-----FEGHKGAVWSCC 68
            H   V  +  S        + +        + +                     + SC 
Sbjct: 49  NHGEVVCAVTISN---PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCK 104

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
           L  +      G    T  +WD      +   E      AC     +              
Sbjct: 105 LLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGN 164

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS-SCTDSGGVRLWDARSGKIVQTLETK 187
             +               +        S+      +      VR WD R G+ +Q  +  
Sbjct: 165 IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT 224

Query: 188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247
           S + S      G ++     SS       +       ++  +   +      G  F++ G
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTG 284

Query: 248 EDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298
           +D  ++ +    G  I         V     S   +   +GS D    +++
Sbjct: 285 KDNLLNAWRTPYGASIF-QSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (172), Expect = 2e-14
 Identities = 50/293 (17%), Positives = 89/293 (30%), Gaps = 12/293 (4%)

Query: 15  HSRPVVDLFYSPITPDG-FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
            S+P    +   +T DG    V    D+            I T   H   V +  +    
Sbjct: 8   GSKPA---YSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPT 63

Query: 74  LFSASGSADFTAKLWDALTGDEKHS------FEHKHIVRACAFSEDTHLLLTGGFEKILR 127
               +G      K+WD      K            + +R+C    D   L+ GG    L 
Sbjct: 64  RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS 122

Query: 128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187
           I+DL  P    +    SS        +  D  +  SC   G + +WD  +  +V+  +  
Sbjct: 123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH 182

Query: 188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247
           +   S     +        G        +     +       ++  SL       ++A G
Sbjct: 183 TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVG 242

Query: 248 EDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
            +                   H   V  ++F+  G+ + S  +D  +  W+T 
Sbjct: 243 MESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 4e-10
 Identities = 14/79 (17%), Positives = 25/79 (31%)

Query: 53  WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE 112
                  H+  V S        +  S   D     W    G      +    V +C  S 
Sbjct: 257 DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV 316

Query: 113 DTHLLLTGGFEKILRIFDL 131
           D   ++TG  +K   ++++
Sbjct: 317 DDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 20/139 (14%), Positives = 33/139 (23%), Gaps = 37/139 (26%)

Query: 170 VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN 229
           +     R  + + TL     V +  +S   R++ T     VK WD +H            
Sbjct: 34  IGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISH------------ 81

Query: 230 TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS 289
                                        +             +   +  P G +   G 
Sbjct: 82  -------------------------PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG 116

Query: 290 EDGTIRIWQTNPPNHEENH 308
           E  T+ IW    P      
Sbjct: 117 EASTLSIWDLAAPTPRIKA 135

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.3 bits (178), Expect = 3e-15
 Identities = 37/278 (13%), Positives = 78/278 (28%), Gaps = 31/278 (11%)

Query: 54  IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE----KHSFEHKHIVRACA 109
           +   +  K  +    +  +       S D +  ++      +      S  +KH +  C 
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 110 FSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169
           F ++T L +  G  +   +          + + N+  ++            L + +  G 
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123

Query: 170 VRLWDARSGKIVQTLETKSPVTSAE--------VSRDGRYITTADGSSVKFWDANHFGLV 221
           + + D R+              + +         +   R I   + S V+++        
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183

Query: 222 KGYNMPCNTE----SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI-------------- 263
            G       +      +L PK    +     D  V V  F                    
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243

Query: 264 -GCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
              +     PV+ + FSP  +   +   DG I  W   
Sbjct: 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.4 bits (134), Expect = 1e-09
 Identities = 33/330 (10%), Positives = 79/330 (23%), Gaps = 35/330 (10%)

Query: 11  VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE---GHKGAVWSC 67
           +       + D+   P       L+  S D S  +   +             +K  +  C
Sbjct: 6   IEQAPKDYISDIKIIP---SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62

Query: 68  CL---DANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK 124
                    ++  +   +            +  +    ++            L+   ++ 
Sbjct: 63  NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDG 122

Query: 125 ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS----CTDSGGVRLWDARSGKI 180
           ++ + D          V N + +   V          SS      ++  V+ +     + 
Sbjct: 123 LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED 182

Query: 181 VQTLETKSP-----VTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESAS 234
                 +S         A + ++      +     V     +  G     +         
Sbjct: 183 DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR 242

Query: 235 LEPKLGN---------------IFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFS 279
           L  K  N                    G D  +  ++  T ++I      +     V+ +
Sbjct: 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIA 301

Query: 280 PGGESYASGSEDGTIRIWQTNPPNHEENHS 309
                    + D T +         E N S
Sbjct: 302 CSDNILCLATSDDTFKTNAAIDQTIELNAS 331

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 71.2 bits (172), Expect = 1e-14
 Identities = 35/292 (11%), Positives = 68/292 (23%), Gaps = 8/292 (2%)

Query: 11  VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF-EGHKGAVWSCCL 69
           V +GH++ +  L  S    DG  L SA  +      +  TG     F + H   +     
Sbjct: 7   VRYGHNKAITALSSSA---DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

Query: 70  DANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRA--CAFSEDTHLLLTGGFEKILR 127
            +          D    +    +G +        +              +      K + 
Sbjct: 64  TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 123

Query: 128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187
           I+   +    P    +S  ++       +     S            +    IV   E  
Sbjct: 124 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEIT 183

Query: 188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247
           S   S   +       +         +         +       +             G 
Sbjct: 184 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS 243

Query: 248 EDMWVHVFDFHTGEQIGC--NKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
            D  V V++ +            H              +  S  +D  I+ W
Sbjct: 244 LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 66.9 bits (161), Expect = 4e-13
 Identities = 33/265 (12%), Positives = 73/265 (27%), Gaps = 3/265 (1%)

Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRACAFSED 113
              GH  A+ +    A+     S  A+     WD  TG     F   H  ++     +  
Sbjct: 7   VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66

Query: 114 THLLLTGGFEKILRI-FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL 172
             L      + +  +    +  D+        S     +A        +++C     +  
Sbjct: 67  GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 126

Query: 173 WDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTES 232
               +   +    +   +++ +         +          +        +     + +
Sbjct: 127 HGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA 186

Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
            S             + +   V +            H   V CV +SP     A+GS D 
Sbjct: 187 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN 246

Query: 293 TIRIWQTNPPNHEENHSGTGNAQTG 317
           ++ +W  N P+         +A + 
Sbjct: 247 SVIVWNMNKPSDHPIIIKGAHAMSS 271

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.2 bits (89), Expect = 5e-04
 Identities = 10/92 (10%), Positives = 30/92 (32%), Gaps = 3/92 (3%)

Query: 43  PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF--- 99
             + N        ++  H   V       + +  A+GS D +  +W+     +       
Sbjct: 206 YSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG 265

Query: 100 EHKHIVRACAFSEDTHLLLTGGFEKILRIFDL 131
            H           +   +++ G +  ++ +++
Sbjct: 266 AHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.4 bits (173), Expect = 2e-14
 Identities = 42/310 (13%), Positives = 82/310 (26%), Gaps = 70/310 (22%)

Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKH------------ 103
             + H   ++S     +     S S D   K+WD    D ++  +  +            
Sbjct: 9   AGKAHDADIFSVSACNSFT--VSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 104 --IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS---------SGSIRTVA 152
             +      + +  L+ T  F   L  + + R D   + +              S   + 
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126

Query: 153 WLHSDQT----ILSSCTDSGGVRLWDARS-------------------GKIVQTLETKSP 189
           W  S+       L +    G   +W                       G +   +     
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186

Query: 190 VTSAEVSRDGRYITTADGSSVK------FWDANHFGLVKGYNMPCNTESASLEPKLGNIF 243
            TS ++S  G   T  +  +V+           +F          N+  +      G++ 
Sbjct: 187 ATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 246

Query: 244 IAGGEDMWVHVFDF----------------HTGEQIGCNKGHHGPVHCVRFSPGGESYAS 287
               +                         H+ +       H   V  + F+  GE+  S
Sbjct: 247 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS 306

Query: 288 GSEDGTIRIW 297
              DG +R W
Sbjct: 307 AGWDGKLRFW 316

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (136), Expect = 8e-10
 Identities = 48/387 (12%), Positives = 102/387 (26%), Gaps = 108/387 (27%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE------GHKGAVWSC 67
            H   +  +          F VS S D    + + +  D     +       HK  +   
Sbjct: 12  AHDADIFSVSACNS-----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 68  CLDANALFS-------ASGSADFTAKLWDALTGDEKHSF-----------EHKHIVRACA 109
            +              A+ S       +     DE                 KH   A  
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126

Query: 110 FSEDT-----HLLLTGGFEKILRIFDLNRP-----------------DAPPREVGNSSGS 147
           +         H L+    +    I+  +                             S  
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186

Query: 148 IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-------SPVTSAEVSRDGR 200
             +V    S++ ++++  ++G V++ +  + + +   E++       + + S + S  G 
Sbjct: 187 ATSVDI--SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244

Query: 201 YITTADGSSV----KFWDANHFGLVKGYNMPCNTESASLEPKL-------------GNIF 243
            +  A  S+       ++      +   ++P ++  ASL                 G   
Sbjct: 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 304

Query: 244 IAGGEDMWVHVFDFHTGEQIGCNKGHHGPV----HCVRFSPGGESYASG----------- 288
            + G D  +  +D  T E+I     H   +      +     G+S A             
Sbjct: 305 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG 364

Query: 289 ----------------SEDGTIRIWQT 299
                             D +IR ++ 
Sbjct: 365 WRSGMGADLNESLCCVCLDRSIRWFRE 391

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 7e-07
 Identities = 38/247 (15%), Positives = 72/247 (29%), Gaps = 47/247 (19%)

Query: 13  HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRN------------------GETGDWI 54
             HS   +    S        LV+     +  +                     E    +
Sbjct: 118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTV 177

Query: 55  GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKH-------IVRA 107
            +         S  +    L  A+G  + T ++ +  T    ++FE +H        +R+
Sbjct: 178 ESPMTPSQFATSVDISERGLI-ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 236

Query: 108 CAFSEDTHLLLTGG---------------FEKILRIFDLNRPDAPPREVGNSSGSIRTVA 152
             FS    LL                    E+I  +                S  + +++
Sbjct: 237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296

Query: 153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-----KSPVTSAEVSRDGRYITTADG 207
           +  S +T+ S+  D G +R WD ++ + + TL       +       V   G  +     
Sbjct: 297 FNDSGETLCSAGWD-GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV 355

Query: 208 SSVKFWD 214
             VKF  
Sbjct: 356 FDVKFLK 362

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 20/129 (15%), Positives = 38/129 (29%), Gaps = 13/129 (10%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
           +        L    HS  V+ L ++     G  L SA  D      + +T + I T   H
Sbjct: 274 VPTHSSQASLGEFAHSSWVMSLSFND---SGETLCSAGWDGKLRFWDVKTKERITTLNMH 330

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
              +              G +     ++D     +          R+   ++    L   
Sbjct: 331 CDDIEIEEDILA--VDEHGDSLAEPGVFDVKFLKK--------GWRSGMGADLNESLCCV 380

Query: 121 GFEKILRIF 129
             ++ +R F
Sbjct: 381 CLDRSIRWF 389

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 69.2 bits (167), Expect = 7e-14
 Identities = 29/285 (10%), Positives = 54/285 (18%), Gaps = 15/285 (5%)

Query: 27  ITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK 86
            TP G  +   +  +S       +      +  H           +  + ASG      +
Sbjct: 25  NTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVR 83

Query: 87  LW-------------DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR 133
           +W                +G  K         R  A  E                     
Sbjct: 84  IWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT 143

Query: 134 PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSA 193
             A      +   S        SD   ++                         +P  S 
Sbjct: 144 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL 203

Query: 194 EVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVH 253
             S  G                              +         G    +   D  + 
Sbjct: 204 FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIK 263

Query: 254 VFDFHTGEQIGCNKGHHG-PVHCVRFSPGGESYASGSEDGTIRIW 297
           +++  T +               +      ++  S S +G I   
Sbjct: 264 IWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.1 bits (120), Expect = 7e-08
 Identities = 15/69 (21%), Positives = 20/69 (28%)

Query: 244 IAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPN 303
           I       V+     +         H       + SP G   ASG   G +RIW T    
Sbjct: 32  IQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT 91

Query: 304 HEENHSGTG 312
           H    +   
Sbjct: 92  HILKTTIPV 100

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.9 bits (117), Expect = 2e-07
 Identities = 41/256 (16%), Positives = 75/256 (29%), Gaps = 16/256 (6%)

Query: 58  EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHL 116
                 V       + +   +G+   +       +  +   + EH H       S   + 
Sbjct: 16  ARGTAVVLGNTPAGDKIQYCNGT---SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYY 72

Query: 117 LLTGGFEKILRIFDLNRPDAP-----PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
             +G     +RI+D  +         P   G                             
Sbjct: 73  CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL 132

Query: 172 LWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTE 231
                S   +            + SR  R I+ +D ++V  ++   F     +       
Sbjct: 133 FDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV 192

Query: 232 SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG-------CNKGHHGPVHCVRFSPGGES 284
            +      G++F + G D  + +++   G + G        N  H G V  + +SP G  
Sbjct: 193 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 252

Query: 285 YASGSEDGTIRIWQTN 300
            AS S D TI+IW   
Sbjct: 253 IASASADKTIKIWNVA 268

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.1 bits (102), Expect = 1e-05
 Identities = 23/129 (17%), Positives = 39/129 (30%), Gaps = 9/129 (6%)

Query: 12  CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT-------FEGHKGAV 64
                     +      PDG    S   D + +L NG  G   G           H G+V
Sbjct: 182 KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV 241

Query: 65  WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGF 122
           +      +    AS SAD T K+W+  T   + +     +   +          L++   
Sbjct: 242 FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA 301

Query: 123 EKILRIFDL 131
              +   + 
Sbjct: 302 NGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.4 bits (100), Expect = 2e-05
 Identities = 7/65 (10%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAE--VSRDGRYITTADGS-S 209
               D T ++S +    +++W+  + K+ +T+   + +   +  +    + + +   +  
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304

Query: 210 VKFWD 214
           + F +
Sbjct: 305 INFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 10/91 (10%), Positives = 30/91 (32%), Gaps = 1/91 (1%)

Query: 84  TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN 143
                     D   +  H   V    +S D   + +   +K ++I+++            
Sbjct: 220 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 279

Query: 144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
           +    + +  + + Q ++S   + G +   +
Sbjct: 280 TRIEDQQLGIIWTKQALVSISAN-GFINFVN 309

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.5 bits (168), Expect = 8e-14
 Identities = 33/310 (10%), Positives = 78/310 (25%), Gaps = 33/310 (10%)

Query: 15  HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCCLDAN 72
              P+    ++    D   +     +    +       W  +   + H G V       +
Sbjct: 6   LVEPISCHAWNK---DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62

Query: 73  ALFSASGSADFTAKLWDALTGDEKHSFEHKHIVR---ACAFSEDTHLLLTGGFEKILRIF 129
           +    +   D  A +W       K +     I R      ++ +      G   +++ I 
Sbjct: 63  SNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 122

Query: 130 DLNRPDAPPREVGNSSGSIRTV--AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187
              + +              TV     H +  +L++ +     R++ A   ++ +     
Sbjct: 123 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER---- 178

Query: 188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247
                                +          L+   +  C           G+      
Sbjct: 179 ------------------PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 220

Query: 248 EDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEEN 307
            D  V + D      +        P+  V F       A+G  D    ++  +    + +
Sbjct: 221 HDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLS 279

Query: 308 HSGTGNAQTG 317
             G  +    
Sbjct: 280 FGGRLDVPKQ 289

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.6 bits (150), Expect = 2e-11
 Identities = 45/316 (14%), Positives = 88/316 (27%), Gaps = 34/316 (10%)

Query: 11  VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCC 68
               H+  V  + ++P   D   +V+   D +  +   +   W           A     
Sbjct: 46  ELKEHNGQVTGVDWAP---DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVR 102

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-----VRACAFSEDTHLLLTGGFE 123
              N    A GS      +      ++    +H        V +  +  ++ LL  G  +
Sbjct: 103 WAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 162

Query: 124 KILRIFDLNRPDAPPR-----------------EVGNSSGSIRTVAWLHSDQTILSSCTD 166
              RIF     +   R                 E  +S G +  V +  +   +    + 
Sbjct: 163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW-VSH 221

Query: 167 SGGVRLWDARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYN 225
              V L DA     V TL +++ P+ +     +   +          +  +       + 
Sbjct: 222 DSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFG 281

Query: 226 MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESY 285
              +    S +  L         D              G +  H   V  +    GG++ 
Sbjct: 282 GRLDVPKQSSQRGLTARERFQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAK 340

Query: 286 ----ASGSEDGTIRIW 297
                +   DG + IW
Sbjct: 341 CSQFCTTGMDGGMSIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 17/168 (10%), Positives = 36/168 (21%), Gaps = 41/168 (24%)

Query: 12  CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA 71
               +   + L       +   + +   D  P+L   ++     +F G            
Sbjct: 236 VATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 294

Query: 72  NALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL 131
                   + D  A    +          HK+ V   +                      
Sbjct: 295 LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK---------------- 338

Query: 132 NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK 179
                                   +  +   +    GG+ +WD RS +
Sbjct: 339 ------------------------AKCSQFCTTGMDGGMSIWDVRSLE 362

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.2 bits (167), Expect = 9e-14
 Identities = 38/254 (14%), Positives = 83/254 (32%), Gaps = 22/254 (8%)

Query: 56  TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDT 114
           T  GH  +V + CL     +  +G+ D   +++D++          H   V A  ++   
Sbjct: 7   TLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG- 64

Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
            +L++G  ++ +R++D+ +        G++S         + +   + + +    + +W 
Sbjct: 65  GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESAS 234
                 V     +                         +            +  +  S  
Sbjct: 125 LPKESSVPDHGEEHDYPL-------------------VFHTPEENPYFVGVLRGHMASVR 165

Query: 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTI 294
                GNI ++G  D  + V+D    + +    GH   ++   +    +   S S D TI
Sbjct: 166 TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 225

Query: 295 RIWQTNPPNHEENH 308
           RIW           
Sbjct: 226 RIWDLENGELMYTL 239

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.2 bits (167), Expect = 9e-14
 Identities = 43/348 (12%), Positives = 100/348 (28%), Gaps = 71/348 (20%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCL-DAN 72
           GH   V+    + +  +  ++++ + D    + +     ++    GH G VW+       
Sbjct: 10  GHMTSVI----TCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 73  ALFSAS------------------------------------------GSADFTAKLWDA 90
            L S S                                          GS D T  +W  
Sbjct: 66  ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125

Query: 91  LTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRT 150
                      +H       + + +    G     +               G+   ++  
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185

Query: 151 VA--------------------WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPV 190
                                     ++    S +    +R+WD  +G+++ TL+  + +
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL 245

Query: 191 TSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM 250
                  D   ++ A   S++ WDAN +     Y+    +   +      +  +  G + 
Sbjct: 246 VGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYV--SDNILVSGSEN 303

Query: 251 WVHVFDFHTGEQIGCN-KGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
             ++++  +G+ +  N       +  V F       A+  +DG   + 
Sbjct: 304 QFNIYNLRSGKLVHANILKDADQIWSVNFKGKTL-VAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 2e-07
 Identities = 29/186 (15%), Positives = 57/186 (30%), Gaps = 7/186 (3%)

Query: 31  GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA 90
           G  +VS S D++ ++ +      +    GH   ++S   D       S S D T ++WD 
Sbjct: 171 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 230

Query: 91  LTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRT 150
             G+  ++ +    +       D  L+       I      +          N    +  
Sbjct: 231 ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTN----LSA 286

Query: 151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET--KSPVTSAEVSRDGRYITTADGS 208
           +   +    IL S ++     +++ RSGK+V          + S                
Sbjct: 287 ITTFYVSDNILVSGSE-NQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDG 345

Query: 209 SVKFWD 214
                 
Sbjct: 346 QSFLEI 351

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.1 bits (164), Expect = 2e-13
 Identities = 33/290 (11%), Positives = 75/290 (25%), Gaps = 16/290 (5%)

Query: 11  VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLD 70
              GH++ +  L  +P       L+S S D   M  +  +       + H   + S    
Sbjct: 8   TISGHNKGITALTVNP-------LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNS 55

Query: 71  ANALFSASGSADFTAKLWDALTGDEKHSFEHKHIV--RACAFSEDTHLLLTGGFEKILRI 128
               +S+    D                              + D  LL+   F   +  
Sbjct: 56  KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 115

Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
                       +  +  ++            LS    S  ++         +    +++
Sbjct: 116 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET 175

Query: 189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248
            + + +V                   A     +   +     + A+ E    ++   G  
Sbjct: 176 YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 235

Query: 249 DMWVHVFDFHTGEQ-IGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
           D  + ++      + I     H   V+ + +     +  S   D  I+ W
Sbjct: 236 DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.5 bits (95), Expect = 9e-05
 Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 3/80 (3%)

Query: 53  WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF--EHKHIVRACAF 110
            I           +   +      A+GS D    ++      +       HK  V    +
Sbjct: 207 KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW 266

Query: 111 SEDTHLLLTGGFEKILRIFD 130
                 L++ G +  ++ ++
Sbjct: 267 ETP-STLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.6 bits (90), Expect = 3e-04
 Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 2/78 (2%)

Query: 97  HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS 156
                     A     +  L+ TG  +  + I+ + RP    + +      +  + W  +
Sbjct: 210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW-ET 268

Query: 157 DQTILSSCTDSGGVRLWD 174
             T++SS  D   ++ W+
Sbjct: 269 PSTLVSSGAD-ACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.6 bits (90), Expect = 3e-04
 Identities = 7/67 (10%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 150 TVAWLHSDQTILSSCTDSGGVRLWDARS-GKIVQTLET-KSPVTSAEVSRDGRYITTADG 207
                  ++ ++++ +    + ++  +   KI++ L   K  V +         +++   
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGAD 278

Query: 208 SSVKFWD 214
           + +K W+
Sbjct: 279 ACIKRWN 285

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 65.7 bits (158), Expect = 1e-12
 Identities = 25/323 (7%), Positives = 63/323 (19%), Gaps = 32/323 (9%)

Query: 9   PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLR--NGETGDWIGTFEGHKGAVWS 66
            ++       +  +       D              L   +  TG      E        
Sbjct: 35  YVLKVPEPLRIRYVRRGG---DTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAM 91

Query: 67  CCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKIL 126
                      +        +              + ++     S+++  +  G   K  
Sbjct: 92  GVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHG 151

Query: 127 RIFDLNRPDAPPREVGNSSGSIRT-------VAWLHSDQTILSSCTDSGGVRLWDARSGK 179
                        ++        T            +D   L   +        D     
Sbjct: 152 ETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN 211

Query: 180 IVQTLETK--------SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTE 231
               + +K              ++          +      +  +    V   +      
Sbjct: 212 FSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIP 271

Query: 232 --------SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGE 283
                   S  +  +    +    E   +  +D  T +           +  +R S   +
Sbjct: 272 LESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV----TEVKNNLTDLRLSADRK 327

Query: 284 SYASGSEDGTIRIWQTNPPNHEE 306
           +     +DG I  +    P  E 
Sbjct: 328 TVMVRKDDGKIYTFPLEKPEDER 350

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 61.4 bits (147), Expect = 4e-11
 Identities = 21/190 (11%), Positives = 48/190 (25%), Gaps = 21/190 (11%)

Query: 12  CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW-------IGTFEGHKGAV 64
               +      +      D   L   S  S     +    ++               G+ 
Sbjct: 171 IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSP 230

Query: 65  WSCCLDANALFSASGSADFTAKLWDALTGDEKHS--------FEHKHIVRACAFSEDTHL 116
               L   ++ S +G  D       +   +                 I       E    
Sbjct: 231 NPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAY 290

Query: 117 LLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR 176
                 + +L  +D+       R+V     ++  +      +T++    D G +  +   
Sbjct: 291 YQGAPEKGVLLKYDVKT-----RKVTEVKNNLTDLRLSADRKTVMVRKDD-GKIYTFPLE 344

Query: 177 SGKIVQTLET 186
             +  +T+ET
Sbjct: 345 KPEDERTVET 354

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 52.2 bits (123), Expect = 4e-08
 Identities = 27/203 (13%), Positives = 49/203 (24%), Gaps = 14/203 (6%)

Query: 127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG-VRLWDARSGKIVQTLE 185
           + F  +       +V      IR V      +      T  G  + ++D R+GK  +  E
Sbjct: 25  QAFIQDVSGTYVLKVP-EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEE 83

Query: 186 TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
               V +  V R+G++   A+            G                     + FIA
Sbjct: 84  NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIA 143

Query: 246 G-----------GEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTI 294
                            +HV+D    +        +   +   F    ++    S     
Sbjct: 144 YGFPLKHGETDGYVMQAIHVYDMEGRKIF-AATTENSHDYAPAFDADSKNLYYLSYRSLD 202

Query: 295 RIWQTNPPNHEENHSGTGNAQTG 317
                   N              
Sbjct: 203 PSPDRVVLNFSFEVVSKPFVIPL 225

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 63.6 bits (153), Expect = 6e-12
 Identities = 26/318 (8%), Positives = 62/318 (19%), Gaps = 46/318 (14%)

Query: 27  ITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDAN-ALFSASGSADFT 84
           +     +++  +  ++  + +  +     +     K    +  +  +        +    
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 85  AKLWDALTGDEKHSF-------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP 137
               D  T              E    + + A S D   +                    
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 138 PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL---------WDARSGKIVQTLETKS 188
                 + G              +     +    L          D ++GK    L  ++
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183

Query: 189 PVTSAEVSRDGRYI---------------------------TTADGSSVKFWDANHFGLV 221
                  + D  Y                            T          D       
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 243

Query: 222 KGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPG 281
                       +      +     G    +  +D    + I      H   +CV F   
Sbjct: 244 TQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTY-YCVAFDKK 302

Query: 282 GESYASGSEDGTIRIWQT 299
           G+    G     + ++  
Sbjct: 303 GDKLYLGGTFNDLAVFNP 320

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 58.6 bits (140), Expect = 3e-10
 Identities = 24/228 (10%), Positives = 57/228 (25%), Gaps = 25/228 (10%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
                 A P+      R V  +  +    DG   V+        ++ G+    +     +
Sbjct: 129 TADGLEAKPVRTFPMPRQVYLMRAAD---DGSLYVAGPDIYKMDVKTGKYTVALPLRNWN 185

Query: 61  KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG 120
           +    +                     W   +   + S     +     F +D     T 
Sbjct: 186 RKGYSAPD---------------VLYFWPHQSPRHEFS----MLYTIARFKDDKQDPATA 226

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
                    DL       +E  + +    T      D   +        +  +D +  K+
Sbjct: 227 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY--GVLNRLAKYDLKQRKL 284

Query: 181 VQTLETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMP 227
           ++              + G  +      + +  ++ +    VK   +P
Sbjct: 285 IKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 49.4 bits (116), Expect = 3e-07
 Identities = 34/285 (11%), Positives = 72/285 (25%), Gaps = 33/285 (11%)

Query: 1   MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG- 59
            +     +  V     R +     SP         + +               +  F   
Sbjct: 73  KNTFHANLSSVPGEVGRSMYSFAISP--DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA 130

Query: 60  --HKGAVWSCCLDANALFSASGSADFTA-------KLWDALTGDEKHSFEHKHIVRACAF 110
              +            ++    + D +           D  TG    +   ++  R    
Sbjct: 131 DGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYS 190

Query: 111 SEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170
           + D                       P +   +    + T+A    D+   ++     G 
Sbjct: 191 APDVLYFW------------------PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY 232

Query: 171 RLWDARSGKIVQTLETK--SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPC 228
              D ++GK              +   S           + +  +D     L+K  N+  
Sbjct: 233 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDH 292

Query: 229 NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPV 273
                + + K G+    GG    + VF+  T E++   K   G +
Sbjct: 293 TYYCVAFDKK-GDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 41.6 bits (96), Expect = 8e-05
 Identities = 22/231 (9%), Positives = 50/231 (21%), Gaps = 19/231 (8%)

Query: 109 AFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG 168
           A       ++   +   L + D+         V        T      ++T        G
Sbjct: 3   ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG 62

Query: 169 GVRLWDARSGKIVQTL-------ETKSPVTSAEVSRDGR--YITTADGSSVKFWDANHFG 219
            +   D  + K            E    + S  +S DG+  Y T      +         
Sbjct: 63  DIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP 122

Query: 220 LVKGYNMPCNTESASLEPKLGNIFIAG----------GEDMWVHVFDFHTGEQIGCNKGH 269
            ++ ++     E+  +        +                 ++  D  TG+        
Sbjct: 123 RLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLR 182

Query: 270 HGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLK 320
           +              +   S      +  T     ++              
Sbjct: 183 NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 233

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 64.0 bits (155), Expect = 6e-12
 Identities = 37/308 (12%), Positives = 80/308 (25%), Gaps = 24/308 (7%)

Query: 27  ITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK 86
              +  F V+        L +G T +     +    AV    L A+  +      D    
Sbjct: 28  WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVN 86

Query: 87  LWDALTGDE------KHSFEHKHIVRACAFSED-THLLLTGGFEKILRIFDL-------- 131
           + D    +       K   E + I  +     +  + +    +     I D         
Sbjct: 87  MIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKI 146

Query: 132 --NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK--IVQTLETK 187
              R      +  +    +  +   H     + +  ++G + L D           +  +
Sbjct: 147 QSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE 206

Query: 188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247
             +    +    RY  TA  +  K    +              ++         +    G
Sbjct: 207 RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG 266

Query: 248 EDMW-VHVFDF---HTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPN 303
                 H+ D      G     +  +   +     + GG S    +   +  ++     N
Sbjct: 267 PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN 326

Query: 304 HEENHSGT 311
            E   SG+
Sbjct: 327 PEAEISGS 334

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.7 bits (123), Expect = 5e-08
 Identities = 28/186 (15%), Positives = 49/186 (26%), Gaps = 28/186 (15%)

Query: 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPV 190
              P+  P +  N             +     +  D+G + L D  + +I   L+T   V
Sbjct: 14  HVAPEDRPTQQMND---------WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV 64

Query: 191 TSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTESASLE------PKLGNIF 243
             + +S  GRY+        V   D           +   +E+ S+E       +     
Sbjct: 65  HISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAI 124

Query: 244 IAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGG------------ESYASGSED 291
                     + D  T E                + P              E   +  E 
Sbjct: 125 AGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET 184

Query: 292 GTIRIW 297
           G I + 
Sbjct: 185 GKILLV 190

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.8 bits (118), Expect = 2e-07
 Identities = 25/250 (10%), Positives = 55/250 (22%), Gaps = 35/250 (14%)

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
            D   LFS +        L D  T + K   +  + V     S     L   G +  + +
Sbjct: 28  WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNM 87

Query: 129 FDLN----RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL 184
            DL        A  +    +     +      D+  ++         + D  + +  +  
Sbjct: 88  IDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ 147

Query: 185 ETKSP-VTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIF 243
            T+       E   + R            +                              
Sbjct: 148 STRGMTYDEQEYHPEPRVAAILASHYRPEF-----------------------------I 178

Query: 244 IAGGEDMWVHVFDFHTGEQIGCNKGHHGPV-HCVRFSPGGESYASGSEDGTIRIWQTNPP 302
           +   E   + + D+     +   +       H          + + +      +      
Sbjct: 179 VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 238

Query: 303 NHEENHSGTG 312
                   TG
Sbjct: 239 GKLVAIEDTG 248

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 63.5 bits (153), Expect = 7e-12
 Identities = 34/332 (10%), Positives = 68/332 (20%), Gaps = 50/332 (15%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLR--NGETGDWIGTFEGHKGAV------- 64
                  D     I+      + A    +          G  +G   G   ++       
Sbjct: 17  ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSG 76

Query: 65  -WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFS---------EDT 114
                   +   SA G      +++D +T       E     R                 
Sbjct: 77  SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136

Query: 115 HLLLTGGFEKILRIFDLN-----RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169
            LL             +      +            G+  T        ++ +S   +  
Sbjct: 137 CLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAP 196

Query: 170 VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG------------SSVKFWDANH 217
                  +     T        +A+ +  G  +                 +     D N 
Sbjct: 197 AAAGIVGAQ---CTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNE 253

Query: 218 FGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVH--------VFDFHTGEQIGCNKGH 269
            G           +  +       I I   E                   G+  G    +
Sbjct: 254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG-PISN 312

Query: 270 HGPVHCVRFSPGGES--YASGSEDGTIRIWQT 299
                 +  +  G S  YA+ +    + I+  
Sbjct: 313 GHDSDAIIAAQDGASDNYANSAGTEVLDIYDA 344

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.9 bits (123), Expect = 4e-08
 Identities = 25/276 (9%), Positives = 53/276 (19%), Gaps = 28/276 (10%)

Query: 75  FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLL----------LTGGFEK 124
             A  +      +  A  G           +                        G    
Sbjct: 38  LPAYFAGTTENWVSCAGCGVTLGHSLG-AFLSLAVAGHSGSDFALASTSFARSAKGKRTD 96

Query: 125 ILRIFDL------NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG 178
            + +FD          + P     +    +  +    S   +L     S           
Sbjct: 97  YVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGA 156

Query: 179 KIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEP- 237
              Q  ++ S       +    Y+ +    S+   D        G      T + +    
Sbjct: 157 SDDQLTKSASCFHIHPGAAATHYLGSCPA-SLAASDLAAAPAAAGIVGAQCTGAQNCSSQ 215

Query: 238 -----KLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
                  G +  A    +                 G+        F   G    +  ++ 
Sbjct: 216 AAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT 275

Query: 293 TIRIWQTNPPNHEENHSGT----GNAQTGKLKASTD 324
              +  T   +     +        A  G+      
Sbjct: 276 DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 57.1 bits (136), Expect = 8e-10
 Identities = 32/310 (10%), Positives = 70/310 (22%), Gaps = 45/310 (14%)

Query: 33  FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCL----DANALFSASGSADFTAKLW 88
           ++++ ++    ++ + E                             + A+ +   +    
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAY-ATVNKSESLVKI 61

Query: 89  DALTGDEKHSFE------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLN-------RPD 135
           D +TG+     +          +   A S D   L        L +             D
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 136 APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEV 195
           A       +  + R +  L   +           + + D  +G +V+    +S       
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181

Query: 196 SRDGRYI-------------------------TTADGSSVKFWDANHFGLVKGYNMPCNT 230
             D   +                          TA  + +   D     +        + 
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241

Query: 231 ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSE 290
              S           G     +  FD      I          + V  S  G +   G  
Sbjct: 242 FYFSTAVNPAKTRAFG-AYNVLESFDLEKNASIK-RVPLPHSYYSVNVSTDGSTVWLGGA 299

Query: 291 DGTIRIWQTN 300
            G +  +   
Sbjct: 300 LGDLAAYDAE 309

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.1 bits (110), Expect = 1e-06
 Identities = 16/119 (13%), Positives = 31/119 (26%), Gaps = 1/119 (0%)

Query: 14  GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
             S  V+   +     D       +  +  +  + ETG+            +      N 
Sbjct: 192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFST-AVNP 250

Query: 74  LFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN 132
             + +  A    + +D             H   +   S D   +  GG    L  +D  
Sbjct: 251 AKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 21/166 (12%), Positives = 44/166 (26%), Gaps = 8/166 (4%)

Query: 38  SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH 97
           S ++    +      W         A        +   +   +        D  TG+   
Sbjct: 174 SWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM 233

Query: 98  SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD 157
                  V   + + +       G   +L  FDL +      +      S  +V      
Sbjct: 234 REVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNA--SIKRVPLPHSYYSVNVSTDG 291

Query: 158 QTILSSCTDSGGVRLWDARSGKIVQTLETK-----SPVTSAEVSRD 198
            T+       G +  +DA + +    ++       S  +    +RD
Sbjct: 292 STVWLGGAL-GDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTRD 336

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 9/81 (11%), Positives = 20/81 (24%), Gaps = 3/81 (3%)

Query: 241 NIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGP--VHCVRFSPGGES-YASGSEDGTIRIW 297
           +  +A      + V D                        +PGG   YA+ ++  ++   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 298 QTNPPNHEENHSGTGNAQTGK 318
                        +   +  K
Sbjct: 62  DLVTGETLGRIDLSTPEERVK 82

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (135), Expect = 8e-10
 Identities = 40/297 (13%), Positives = 72/297 (24%), Gaps = 28/297 (9%)

Query: 29  PDGFFLVSASKDSSPML---RNGETGDWIGTFEGHKGAVWSCC---LDANALFSASGSAD 82
           P    +      S+ +            +  F GH  +V +         + +  SG   
Sbjct: 27  PTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES 86

Query: 83  FTAKLWDALTGDEKHSFE---------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR 133
               +W      E +S E             +   ++  +   L   G  +      ++ 
Sbjct: 87  GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISW 146

Query: 134 PDAPP-REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTS 192
                  EV   S  I       S      +  D G V  +     K   +  T     S
Sbjct: 147 DSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGS 206

Query: 193 AEVS---------RDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIF 243
                              +    S            ++    P      +L       F
Sbjct: 207 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKF 266

Query: 244 IAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFS---PGGESYASGSEDGTIRIW 297
              G D  + V+D  T + +         +   +      G     S S DGT+  +
Sbjct: 267 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 5/84 (5%)

Query: 232 SASLEPKLGNIFIAGGEDMWVHVFDFHTG--EQIGCNKGHHG-PVHCVRFSP--GGESYA 286
             S +P    I    G+  +V   D        +    GH    V  V+FSP  G +   
Sbjct: 22  HLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLC 81

Query: 287 SGSEDGTIRIWQTNPPNHEENHSG 310
           SG E G + +W         +   
Sbjct: 82  SGDESGKVIVWGWTFDKESNSVEV 105

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 2e-04
 Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 5/82 (6%)

Query: 12  CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAV----WSC 67
                 PV    ++    D     +   D++  + +  T   +  +   K  +       
Sbjct: 244 IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 303

Query: 68  CLDANALFSASGSADFTAKLWD 89
               N     S S D T   ++
Sbjct: 304 VATGNGRI-ISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP-----VTSAEVSRDGRYITTADG 207
               D    ++      +R+WD  + K VQ                  + +GR I+ +  
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317

Query: 208 SSVKFWD 214
            ++ F++
Sbjct: 318 GTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 7e-04
 Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 77  ASGSADFTAKLWDALTGDEKHSFE-HKHIVR----ACAFSEDTHLLLTGGFEKILRIFDL 131
           A+  AD T ++WD  T      +   K  +         + +   +++   +  L  ++L
Sbjct: 267 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.4 bits (87), Expect = 8e-04
 Identities = 25/264 (9%), Positives = 68/264 (25%), Gaps = 23/264 (8%)

Query: 15  HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF--------EGHKGAVWS 66
            S  V  + +SP      +L S  +    ++          +         +   G +  
Sbjct: 62  GSSVVTTVKFSP-IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISD 120

Query: 67  CCLDANALFSASGSA--DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTH----LLLTG 120
              D             D         +G+                 + +     + +  
Sbjct: 121 ISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGD 180

Query: 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180
               +       +  A  R        +R V +       + +      +  +D +SG+ 
Sbjct: 181 DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF 240

Query: 181 VQTLETKSPVTSAEV----SRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTE---S 232
           ++ +E         +      D +   T    ++++ WD      V+ + +         
Sbjct: 241 LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300

Query: 233 ASLEPKLGNIFIAGGEDMWVHVFD 256
             +        I+   D  ++ ++
Sbjct: 301 VGVVATGNGRIISLSLDGTLNFYE 324

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 57.1 bits (136), Expect = 9e-10
 Identities = 46/366 (12%), Positives = 87/366 (23%), Gaps = 72/366 (19%)

Query: 27  ITPDGFFL-----VSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSAS--- 78
             PD   +        +  +   + +GE G  IG  +G          D + +  AS   
Sbjct: 9   PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVF 68

Query: 79  -----GSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFD--- 130
                G      +++D +T       E     R    +      LT   + +L       
Sbjct: 69  SRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA 128

Query: 131 -------------LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
                            D P       +                 +    G   +     
Sbjct: 129 PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV 188

Query: 178 GKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWD----------------------A 215
                      P  S    + GR +       +   D                       
Sbjct: 189 FHPEDEFLINHPAYS---QKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADG 245

Query: 216 NHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHC 275
              G  +        +   L     + +       +V V D  TGE++   +  H     
Sbjct: 246 WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEI-DS 304

Query: 276 VRFSPGGES--YASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGF 333
           +  S   +   YA  + D T+ I                +A++G+   S +++    +  
Sbjct: 305 INVSQDEKPLLYALSTGDKTLYIH---------------DAESGEELRSVNQLGHGPQVI 349

Query: 334 HINKEG 339
                G
Sbjct: 350 TTADMG 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 17/179 (9%), Positives = 43/179 (24%), Gaps = 29/179 (16%)

Query: 26  PITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADF 83
             +     LV  +        +  +GD  ++   E    A  +           +     
Sbjct: 201 AYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRAL 260

Query: 84  TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN 143
                                 R     +           + + + D             
Sbjct: 261 D---------------------RIYLLVDQRDEWRHKTASRFVVVLDA--KTGERLAKFE 297

Query: 144 SSGSIRTVAWLHSDQTIL-SSCTDSGGVRLWDARSGKIVQTLET--KSPVTSAEVSRDG 199
               I ++     ++ +L +  T    + + DA SG+ ++++      P      +  G
Sbjct: 298 MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGP-QVITTADMG 355

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 54.5 bits (129), Expect = 5e-09
 Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 2/121 (1%)

Query: 163 SCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR--YITTADGSSVKFWDANHFGL 220
           + ++S  + + D  S K+  T+   S    A +S DG   Y+  A  + V   D     +
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66

Query: 221 VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSP 280
           +       + +  ++ P    +++       + V D  +    G  K    P+       
Sbjct: 67  IATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPD 126

Query: 281 G 281
           G
Sbjct: 127 G 127

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 51.4 bits (121), Expect = 6e-08
 Identities = 26/274 (9%), Positives = 68/274 (24%), Gaps = 7/274 (2%)

Query: 32  FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91
           F  ++ S+  +  + +  +     T       + +           + +      + D  
Sbjct: 3   FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62

Query: 92  TGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV 151
           T +   +       +  A S D   +                 +     V     S   +
Sbjct: 63  TNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGL 121

Query: 152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVK 211
           A     + +  +      V + +  +  ++ T+          V+ DG  +  A+  S+ 
Sbjct: 122 ALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMS 181

Query: 212 FWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH----TGEQIGCNK 267
               +         +      + +                           T +      
Sbjct: 182 ISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP 241

Query: 268 GHHGPVHCVRFSPGGES-YASGSEDGTIRIWQTN 300
               P   +  +P G+  Y + S   T+ +  T 
Sbjct: 242 VGPDP-AGIAVTPDGKKVYVALSFCNTVSVIDTA 274

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 45.6 bits (106), Expect = 4e-06
 Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 2/68 (2%)

Query: 242 IFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGES-YASGSEDGTIRIWQTN 300
            +IA  E   + V D  + +          P      SP G   Y + +    + I  T 
Sbjct: 4   AYIANSESDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSIIDTA 62

Query: 301 PPNHEENH 308
             N     
Sbjct: 63  TNNVIATV 70

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 36.4 bits (82), Expect = 0.003
 Identities = 5/41 (12%), Positives = 13/41 (31%)

Query: 146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET 186
                +A     + +  + +    V + D  +  I  T+  
Sbjct: 244 PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 53.8 bits (128), Expect = 1e-08
 Identities = 25/145 (17%), Positives = 43/145 (29%), Gaps = 7/145 (4%)

Query: 163 SCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLV 221
           +  D+G + L D  S KIV+ ++T   V  + +S  GRY+      + +   D       
Sbjct: 37  TLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT 96

Query: 222 KGYNMPCNTESASLE------PKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHC 275
           K   +    E+ S+E       +               + D  T E           V  
Sbjct: 97  KVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT 156

Query: 276 VRFSPGGESYASGSEDGTIRIWQTN 300
             + P     A  +           
Sbjct: 157 QTYHPEPRVAAIIASHEHPEFIVNV 181

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 49.6 bits (117), Expect = 3e-07
 Identities = 38/261 (14%), Positives = 70/261 (26%), Gaps = 25/261 (9%)

Query: 69  LDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRI 128
           LD   LFS +        L D  +       +  + V     S     LL  G +  + +
Sbjct: 28  LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDM 87

Query: 129 FDLNRPD----APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL 184
            DL   +    A  +    +     +    + D+  ++         + D  + +  Q +
Sbjct: 88  IDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV 147

Query: 185 ETKS-PVTSAEVSRDGRYITTADGSSVKFWDANHFG----LVKGYNMPCNTESASLEP-- 237
            T+   V +     + R            +  N       L+  Y    N    S+    
Sbjct: 148 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP 207

Query: 238 --------KLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRF------SPGGE 283
                        F+    +            ++          H  R         G  
Sbjct: 208 FLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPV 267

Query: 284 SYASGSEDGTIRIWQTNPPNH 304
              S   DG+I +  T+P NH
Sbjct: 268 WSTSHLGDGSISLIGTDPKNH 288

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 46.9 bits (110), Expect = 2e-06
 Identities = 38/339 (11%), Positives = 88/339 (25%), Gaps = 47/339 (13%)

Query: 2   DKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHK 61
           +  KV V        RP   L    +     F V+        L +G++   +   +   
Sbjct: 9   ESWKVLVKP----EDRPKKQLN--DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY 62

Query: 62  GAVWSCCLDANALFSASGSADFTAKLWDALTGDE------KHSFEHKHIVRACAFSEDTH 115
            AV    + A+  +      D    + D    +       K   E + +  +     +  
Sbjct: 63  -AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDR 121

Query: 116 LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRT-----------VAWLHSDQTILSSC 164
             + G +              P + V     ++ T           +   H     + + 
Sbjct: 122 YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 181

Query: 165 TDSGGVRLWDARSGKIVQ--TLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVK 222
            ++G V L + +    +   ++     +         RY  TA  +S K    +      
Sbjct: 182 KETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRL 241

Query: 223 ------GYNMPCNTESASLEPKLGNIFIAGGEDMWVHVF--------DFHTGEQIGCNKG 268
                 G        +  + PK G ++                      +  +++   +G
Sbjct: 242 SALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG 301

Query: 269 HHGPVHCVRFSPGGESYA-------SGSEDGTIRIWQTN 300
             G    ++  P                   ++ ++   
Sbjct: 302 QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLK 340

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 242 IFIAGGEDMWVHVFDFHTGEQIGCNK--GHHGPVHCVRFSPGGES-YASGSEDGTIRIWQ 298
           ++IA  E   +HV++ +    +   +     G V  +  SP     Y     +  +  ++
Sbjct: 6   VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYR 65

Query: 299 TNPPNH 304
             P + 
Sbjct: 66  IAPDDG 71

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 14/132 (10%), Positives = 34/132 (25%), Gaps = 11/132 (8%)

Query: 158 QTILSSCTDSGGVRLWDARSG---KIVQTLETKSPVTSAEVSRDGR--YITTADGSSVKF 212
           QT+  +  +S  + +W+        + Q ++    V    VS D R  Y+       V  
Sbjct: 4   QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLA 63

Query: 213 WDANHFGLVKGYNMPCNTESA------SLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCN 266
           +          +        +        + +   +      ++ V   +      +   
Sbjct: 64  YRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDV 123

Query: 267 KGHHGPVHCVRF 278
                  H    
Sbjct: 124 VEGLDGCHSANI 135

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	350
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.96
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.92
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.91
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.91
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.9
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.86
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.86
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.82
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.75
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.72
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.72
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.7
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.68
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.58
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.58
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.5
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.5
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.48
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.22
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.1
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.01
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.97
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.96
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.93
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.9
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.89
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.84
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.76
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.74
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.65
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.63
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.38
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.15
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.14
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.14
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.13
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.1
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.07
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.76
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.49
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.32
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.11
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.08
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.9
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.66
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.58
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.21
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.02
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.85
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.83
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.82
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.37
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.26
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.11
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.77
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	93.06
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	91.58
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	89.71
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	89.59
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	87.02
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	86.96
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	81.02
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	80.91

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-42  Score=303.75  Aligned_cols=284  Identities=21%  Similarity=0.340  Sum_probs=246.0

Q ss_pred             eEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (350)
Q Consensus        10 ~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd   89 (350)
                      ..++||+++|++|+|+|   ++.+|||||.|++|+|||..+++++.++.+|.+.|.++++++++.++++++.++.+.+|+
T Consensus        11 ~~L~GH~~~I~~l~~sp---~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~   87 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHP---VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD   87 (317)
T ss_dssp             CEEECCSSCEEEEEECS---SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred             EEEcCCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccc
Confidence            35799999999999987   899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784           90 ALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (350)
Q Consensus        90 ~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg  168 (350)
                      .........+ .|...+.++.|+|++..+++++.|+.+++||+.++.. ......+...+.+++|.+ ++.++++++.|+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~  165 (317)
T d1vyhc1          88 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC-VKTFTGHREWVRMVRPNQ-DGTLIASCSNDQ  165 (317)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECT-TSSEEEEEETTS
T ss_pred             ccccccccccccccccceeeeccCCCceEEeeccCcceeEeeccccee-eeEEccCCCcceeeeccc-CCCEEEEEeCCC
Confidence            8877655544 5788899999999999999999999999999986543 334456778888998875 567888999999


Q ss_pred             eEEEEECCCCceeEeecC-CCCeEEEEEecCC--------------------c-EEEEEcCCcEEEEECCCcceeeeeec
Q 018784          169 GVRLWDARSGKIVQTLET-KSPVTSAEVSRDG--------------------R-YITTADGSSVKFWDANHFGLVKGYNM  226 (350)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~--------------------~-~l~~~~~~~i~vwd~~~~~~~~~~~~  226 (350)
                      .|++|++++++....+.. ...+..+.++|++                    . +++++.++.|++||.++..++..+..
T Consensus       166 ~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~  245 (317)
T d1vyhc1         166 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG  245 (317)
T ss_dssp             CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeC
Confidence            999999999998887764 4567778777653                    2 33456789999999999998888776


Q ss_pred             CCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          227 PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       227 ~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      +..........+++++|++|+.|+.|++||+.+++++..+.+|.++|++++|+|++++|+||+.||+|+|||
T Consensus       246 ~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         246 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            555444333334689999999999999999999999999999999999999999999999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-42  Score=307.98  Aligned_cols=279  Identities=16%  Similarity=0.176  Sum_probs=234.9

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCce-----eeeccCccCCeEEEEECCCCcEEEEeeCCCeEEE
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW-----IGTFEGHKGAVWSCCLDANALFSASGSADFTAKL   87 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~-----~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~v   87 (350)
                      -+|..+|.+++|+|   +|++||||+ |++|+|||+.++..     .....+|.+.|.+++|+|++.+|++|+.||+|++
T Consensus        48 ~~H~~~V~~v~fs~---~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~i  123 (337)
T d1gxra_          48 LNHGEVVCAVTISN---PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI  123 (337)
T ss_dssp             ECCSSCCCEEEECS---SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred             CCCCCcEEEEEECC---CCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccc
Confidence            38999999999986   999999997 89999999876533     2244689999999999999999999999999999


Q ss_pred             eeCCCCCee--eee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEE
Q 018784           88 WDALTGDEK--HSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (350)
Q Consensus        88 Wd~~~~~~~--~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~  164 (350)
                      ||+......  ..+ .|...+.+++|+|++.++++++.|+.|++|++.+... ......|...+.+++|.+ ++..++++
T Consensus       124 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~-~~~~~~~~~~v~~l~~s~-~~~~~~~~  201 (337)
T d1gxra_         124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISN-DGTKLWTG  201 (337)
T ss_dssp             EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECT-TSSEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccc-cccccccc
Confidence            998755433  233 4778899999999999999999999999999986543 334456788899999875 45677788


Q ss_pred             eCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEE-EcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEE
Q 018784          165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIF  243 (350)
Q Consensus       165 ~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (350)
                      +.|++|++||+++++.+..+....++.+++|+|+++++++ +.++.+++||+++...............+.+.+ ++++|
T Consensus       202 ~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~-~g~~l  280 (337)
T d1gxra_         202 GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWF  280 (337)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECT-TSSEE
T ss_pred             cccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccccccccccccceEEECC-CCCEE
Confidence            8999999999999999999999999999999999988765 468899999999877665443333344555655 57899


Q ss_pred             EEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          244 IAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       244 ~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                      ++|+.|+.|++||+.+++.+..+ .|...|++++|+|++++|++|+.||.|+|||+
T Consensus       281 ~s~s~Dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         281 VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEeCCCeEEEEECCCCCEEEEc-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            99999999999999999888665 47889999999999999999999999999986

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-41  Score=305.18  Aligned_cols=288  Identities=22%  Similarity=0.352  Sum_probs=233.3

Q ss_pred             ccceeE-eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeecc------------------CccCCeEE
Q 018784            6 VAVPLV-CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE------------------GHKGAVWS   66 (350)
Q Consensus         6 ~~~~~~-~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~------------------gH~~~V~~   66 (350)
                      +.+++. ..+|+++|++|+|+|   ||++||+|+ |++|+|||+.+++.+..+.                  +|...|++
T Consensus        51 ~~~~l~~~~~H~~~V~~l~fs~---dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~  126 (388)
T d1erja_          51 IDVELHKSLDHTSVVCCVKFSN---DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRS  126 (388)
T ss_dssp             EEEEEEEEEECSSCCCEEEECT---TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEE
T ss_pred             eeeeeEeeCCCCCcEEEEEECC---CCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEE
Confidence            344443 248999999999987   999999987 8999999999988876664                  46667999


Q ss_pred             EEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCC
Q 018784           67 CCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS  145 (350)
Q Consensus        67 v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~  145 (350)
                      ++|++++.+|++|+.||+|++||..+++....+ .|...|.++++++++..+++++.++.+++||+.....  .....+.
T Consensus       127 l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~~~~~~  204 (388)
T d1erja_         127 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC--SLTLSIE  204 (388)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--EEEEECS
T ss_pred             EEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccc--ccccccc
Confidence            999999999999999999999999888776665 4889999999999999999999999999999975432  2223345


Q ss_pred             CcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec--------CCCCeEEEEEecCCcEEEEE-cCCcEEEEECC
Q 018784          146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--------TKSPVTSAEVSRDGRYITTA-DGSSVKFWDAN  216 (350)
Q Consensus       146 ~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~  216 (350)
                      .....+.+.+.++.++++++.|+.|++||++++.....+.        +..+|.++.|+|++++|+++ .++.|++||++
T Consensus       205 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~  284 (388)
T d1erja_         205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ  284 (388)
T ss_dssp             SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEecc
Confidence            5667788888888999999999999999999988776654        24579999999999887654 68999999997


Q ss_pred             Ccceeeee------------ecCCC-CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEE-----
Q 018784          217 HFGLVKGY------------NMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRF-----  278 (350)
Q Consensus       217 ~~~~~~~~------------~~~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~-----  278 (350)
                      +.......            ..+.. ...+.+.+ ++++|++|+.|+.|++||+.+++++.++.+|.+.|.++++     
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~  363 (388)
T d1erja_         285 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSS  363 (388)
T ss_dssp             --------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCT
T ss_pred             CCccccccccccccceeeecccccceEEEEEECC-CCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcc
Confidence            65433221            11111 23344544 5789999999999999999999999999999999999975     


Q ss_pred             -cCCCCEEEEecCCCcEEEecCC
Q 018784          279 -SPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       279 -sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                       +|++++|||||.||+|+||+++
T Consensus       364 ~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         364 LGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             TCTTCEEEEEEETTSEEEEEEEE
T ss_pred             cCCCCCEEEEEeCCCEEEEEeee
Confidence             5788999999999999999873

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-39  Score=286.82  Aligned_cols=281  Identities=20%  Similarity=0.361  Sum_probs=231.7

Q ss_pred             EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~   90 (350)
                      .++||+++|++++|+|   ++.+||||+.|++|+|||..+++.+..+.+|...|.+++|+|++.++++|+.|+.+++|+.
T Consensus        50 tL~GH~~~I~~l~~s~---~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~  126 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGT---DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             EECCCSSCEEEEEECT---TSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred             EECCCCCCEEEEEECC---CCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccc
Confidence            4689999999999987   9999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCCCe----eeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe
Q 018784           91 LTGDE----KHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT  165 (350)
Q Consensus        91 ~~~~~----~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~  165 (350)
                      .....    ...+ .|....... ....+..+.....|.....+....... ......+...+....+. +...+++++.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~  203 (340)
T d1tbga_         127 KTREGNVRVSRELAGHTGYLSCC-RFLDDNQIVTSSGDTTCALWDIETGQQ-TTTFTGHTGDVMSLSLA-PDTRLFVSGA  203 (340)
T ss_dssp             SSSCSCCCEEEEECCCSSCEEEE-EEEETTEEEEEETTTEEEEEETTTTEE-EEEEECCSSCEEEEEEC-TTSSEEEEEE
T ss_pred             cccccccccceeccccccccccc-ccccccccccccccccccccccccccc-cccccccceeEeeeccc-cccceeEEee
Confidence            65432    2222 344444444 344456677888899999998764332 22334455566666655 4666788899


Q ss_pred             CCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCC---CceeEecCCCC
Q 018784          166 DSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN---TESASLEPKLG  240 (350)
Q Consensus       166 ~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~  240 (350)
                      .|+.|++||+++++++..+.. ..+|++++|+|++++++++ .++.|++||++....+..+.....   ...+.+.+ ++
T Consensus       204 ~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~  282 (340)
T d1tbga_         204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SG  282 (340)
T ss_dssp             TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECS-SS
T ss_pred             cCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECC-CC
Confidence            999999999999999988875 5689999999999887664 689999999998887766644332   23344554 58


Q ss_pred             cEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          241 NIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       241 ~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      ++|++|+.|+.|++||+.+++.+..+.+|.++|++++|+|++++|+|||.||.|+|||
T Consensus       283 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         283 RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999999999999999999999999999999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8.9e-39  Score=281.85  Aligned_cols=280  Identities=12%  Similarity=0.126  Sum_probs=229.3

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~   92 (350)
                      +.+.+.+..++++|   +|..||.++ ++.+.+|++.+.+..+.+.+|++.|.+++|+|++++||+|+.||+|+|||+.+
T Consensus        14 ~~~r~~~~~~a~~~---~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~   89 (311)
T d1nr0a1          14 RTARGTAVVLGNTP---AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQ   89 (311)
T ss_dssp             CCCTTCCCCCEECT---TSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSS
T ss_pred             CCCCCCeEEEEEcC---CCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeec
Confidence            34444566777776   999998875 56799999999999999999999999999999999999999999999999988


Q ss_pred             CCee--eee-eccccEeEEEEcCCCCeEEEeeC--CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC
Q 018784           93 GDEK--HSF-EHKHIVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS  167 (350)
Q Consensus        93 ~~~~--~~~-~h~~~V~~~~~~~~~~~l~sg~~--d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d  167 (350)
                      +...  ..+ .|...|.+++|+|++++|++++.  +..+++|++...+.. .....|...|.+++|.+.++.++++|+.|
T Consensus        90 ~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~-~~l~~h~~~v~~v~~~~~~~~~l~sgs~d  168 (311)
T d1nr0a1          90 TTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN-GNLTGQARAMNSVDFKPSRPFRIISGSDD  168 (311)
T ss_dssp             TTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBC-BCCCCCSSCEEEEEECSSSSCEEEEEETT
T ss_pred             cccccccccccccCcccccccccccccccccccccccccccccccccccc-ccccccccccccccccccceeeecccccc
Confidence            7643  233 48889999999999999999876  466999999865543 34456788899999988777788999999


Q ss_pred             CeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCC--------CCceeEecC
Q 018784          168 GGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPC--------NTESASLEP  237 (350)
Q Consensus       168 g~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~--------~~~~~~~~~  237 (350)
                      ++|++||+++++....+.. ..+++++.++|++++++++ .++.|++||.++......+....        ....+.+.+
T Consensus       169 ~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~  248 (311)
T d1nr0a1         169 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP  248 (311)
T ss_dssp             SCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT
T ss_pred             cccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence            9999999999998888765 5689999999999988755 58999999998877665544321        123455655


Q ss_pred             CCCcEEEEecCCCeEEEEEcccCeeEEeecCCCc---CEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          238 KLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHG---PVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       238 ~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~---~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                       ++++|++|+.|+.|++||+.+++++.++..|..   .+.++.|  ++.+|++++.||.|++||.+
T Consensus       249 -~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         249 -DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             -TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             -CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence             579999999999999999999999988876643   3445555  56689999999999999863

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.1e-38  Score=283.53  Aligned_cols=280  Identities=13%  Similarity=0.183  Sum_probs=218.4

Q ss_pred             cCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc--eeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC
Q 018784           15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (350)
Q Consensus        15 H~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~--~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~   92 (350)
                      +-+||++++|+|   ||++||+|+.|+.|+||+..+++  .+..|++|.++|.+++|+|++.+|+|++.|++|+|||+.+
T Consensus         6 ~~~pIt~~~~s~---dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~   82 (371)
T d1k8kc_           6 LVEPISCHAWNK---DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   82 (371)
T ss_dssp             CSSCCCEEEECT---TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             CCCCeEEEEECC---CCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecc
Confidence            357899999986   99999999999999999987765  6678999999999999999999999999999999999987


Q ss_pred             CCeeeee---eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC---eeecCCCCcEEEEEEeCCCCcEEEEEeC
Q 018784           93 GDEKHSF---EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP---REVGNSSGSIRTVAWLHSDQTILSSCTD  166 (350)
Q Consensus        93 ~~~~~~~---~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~s~~~  166 (350)
                      +.....+   .|...|.+++|+|+++.|++|+.|+++++|++.......   .....+...|.+++|.| ++.++++|+.
T Consensus        83 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~  161 (371)
T d1k8kc_          83 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSC  161 (371)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT-TSSEEEEEET
T ss_pred             cccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccc-cccceecccc
Confidence            6644332   578889999999999999999999999999987544321   22345778899999975 5677889999


Q ss_pred             CCeEEEEECCCCc------------------eeEeec-CCCCeEEEEEecCCcEEEE-EcCCcEEEEECCCcceeeeeec
Q 018784          167 SGGVRLWDARSGK------------------IVQTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNM  226 (350)
Q Consensus       167 dg~i~iwd~~~~~------------------~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~~~~~~~~  226 (350)
                      |++|++||+....                  .+.... +...+.+++|+|+++++++ +.|+.|++||+.+...+..+..
T Consensus       162 D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~  241 (371)
T d1k8kc_         162 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS  241 (371)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred             CcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeec
Confidence            9999999986532                  222222 3456899999999988765 4689999999999888877766


Q ss_pred             CCCC-ceeEecCCCCcEEEEecCCCeEEEEEccc--CeeEE---------------------------------------
Q 018784          227 PCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHT--GEQIG---------------------------------------  264 (350)
Q Consensus       227 ~~~~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~--~~~~~---------------------------------------  264 (350)
                      +... ..+.+.+ +++++++|+ |+.+++|....  +....                                       
T Consensus       242 ~~~~v~s~~fs~-d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (371)
T d1k8kc_         242 ETLPLLAVTFIT-ESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAG  319 (371)
T ss_dssp             SSCCEEEEEEEE-TTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CC
T ss_pred             ccccceeeeecC-CCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccce
Confidence            5443 3455655 466666655 67666665432  11100                                       


Q ss_pred             eecCCCcCEEEEEEcCCC----CEEEEecCCCcEEEecCC
Q 018784          265 CNKGHHGPVHCVRFSPGG----ESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       265 ~~~~h~~~v~~l~~sp~~----~~lasgs~Dg~v~vw~~~  300 (350)
                      ....|.+.|++++++|.+    ..|+|+|.||.|+|||+.
T Consensus       320 ~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~  359 (371)
T d1k8kc_         320 LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR  359 (371)
T ss_dssp             CSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred             ecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCC
Confidence            001388899999998754    358999999999999974

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.4e-37  Score=268.26  Aligned_cols=278  Identities=17%  Similarity=0.152  Sum_probs=213.9

Q ss_pred             eEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeecc-CccCCeEEEEECCCCcEEEEeeCCCeEEEe
Q 018784           10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKLW   88 (350)
Q Consensus        10 ~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vW   88 (350)
                      -+++||+++|++++|+|   ||++||||+.|++|++||+++++.+..+. +|...|.+++|++++.+ ++++.|+.+++|
T Consensus         6 ~~~~GH~~~V~~l~~s~---dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~   81 (299)
T d1nr0a2           6 QVRYGHNKAITALSSSA---DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVV   81 (299)
T ss_dssp             EEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEE
T ss_pred             eEcCCCCCCcEEEEECC---CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEe
Confidence            35699999999999986   99999999999999999999999998884 79999999999999986 456789999999


Q ss_pred             eCCCCCe----eeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEE
Q 018784           89 DALTGDE----KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (350)
Q Consensus        89 d~~~~~~----~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~  164 (350)
                      +......    .....+...+.+++|+|++.++++++ ++.+++|+..+.   ..  ......+.+++|.+ ++.++++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~---~~--~~~~~~~~~~~~s~-~~~~l~~g  154 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKL---TE--VPISYNSSCVALSN-DKQFVAVG  154 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEE---EE--EECSSCEEEEEECT-TSCEEEEE
T ss_pred             ccCCccccccccccccccccccccccccccccccccc-cccccccccccc---cc--cccccccccccccc-cccccccc
Confidence            9764432    12234677899999999998777655 568999986421   11  12334567788765 56788889


Q ss_pred             eCCCeEEEEECCCCcee--EeecCCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeee---eecCCCC-ceeEecC
Q 018784          165 TDSGGVRLWDARSGKIV--QTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKG---YNMPCNT-ESASLEP  237 (350)
Q Consensus       165 ~~dg~i~iwd~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~---~~~~~~~-~~~~~~~  237 (350)
                      +.|+.|++||+++++..  ....+..++.+++|+|++++++++ .++.|++||+.+......   +..+... ..+.+.+
T Consensus       155 ~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  234 (299)
T d1nr0a2         155 GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP  234 (299)
T ss_dssp             ETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999887643  344567889999999999887655 578999999877654432   2222222 3345555


Q ss_pred             CCCcEEEEecCCCeEEEEEcccCeeE--EeecCC-CcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          238 KLGNIFIAGGEDMWVHVFDFHTGEQI--GCNKGH-HGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       238 ~~~~~l~sg~~d~~i~v~d~~~~~~~--~~~~~h-~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                       ++.+|++|+.|+.|++||+.++...  .....| ...|.++.| +++++|+|||.|+.|++||+.
T Consensus       235 -~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         235 -DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             -TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             -cccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence             5899999999999999999876543  333344 455676655 567799999999999999984

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-37  Score=270.34  Aligned_cols=287  Identities=24%  Similarity=0.381  Sum_probs=214.5

Q ss_pred             ccccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCC
Q 018784            4 RKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF   83 (350)
Q Consensus         4 ~~~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg   83 (350)
                      .++..+.+++||+++|.. ++++   +|++|||||.|++|+|||..+++++.++.+|.+.|.+++++++  ++++++.|+
T Consensus         4 ~~~~~~~~l~GH~~~V~s-~~~~---~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~   77 (342)
T d2ovrb2           4 GELKSPKVLKGHDDHVIT-CLQF---CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDR   77 (342)
T ss_dssp             SCCCCCEEEECSTTSCEE-EEEE---ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTS
T ss_pred             CCCCcCEEECCcCCceEE-EEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecc
Confidence            345667789999999865 3443   6889999999999999999999999999999999999999864  899999999


Q ss_pred             eEEEeeCCCCCeeeeee-cccc--------------------------------------EeEEEEcCCCCeEEEeeCCC
Q 018784           84 TAKLWDALTGDEKHSFE-HKHI--------------------------------------VRACAFSEDTHLLLTGGFEK  124 (350)
Q Consensus        84 ~v~vWd~~~~~~~~~~~-h~~~--------------------------------------V~~~~~~~~~~~l~sg~~d~  124 (350)
                      ++++|+........... +...                                      .....+.+....+++++.|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  157 (342)
T d2ovrb2          78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF  157 (342)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred             cccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCC
Confidence            99999976543322111 0000                                      01122334456788889999


Q ss_pred             eEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEE
Q 018784          125 ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYIT  203 (350)
Q Consensus       125 ~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~  203 (350)
                      .|++||+...... .....|...+..+.+   ++..+++++.||+|++||++.++++..+..+ ..+.++.++++ .+++
T Consensus       158 ~i~~~d~~~~~~~-~~~~~~~~~~~~~~~---~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s  232 (342)
T d2ovrb2         158 MVKVWDPETETCL-HTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN-ILVS  232 (342)
T ss_dssp             CEEEEEGGGTEEE-EEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETT-EEEE
T ss_pred             eEEEeecccceee-EEEcCcccccccccC---CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCC-EEEE
Confidence            9999998654322 233445555555543   4667889999999999999999988888764 45666655543 3445


Q ss_pred             EEcCCcEEEEECCCcceeeeeecCCC-CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEee-----cCCCcCEEEEE
Q 018784          204 TADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCN-----KGHHGPVHCVR  277 (350)
Q Consensus       204 ~~~~~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~-----~~h~~~v~~l~  277 (350)
                      ++.++.|++||....+....+..+.. .........+++++++|+.|+.|++||+.+++.+..+     .+|...|++++
T Consensus       233 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~  312 (342)
T d2ovrb2         233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR  312 (342)
T ss_dssp             EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE
T ss_pred             EcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEE
Confidence            56789999999998877666554322 2222222224689999999999999999999988765     35778899999


Q ss_pred             EcCCCCEEEEecCCCc----EEEecCCC
Q 018784          278 FSPGGESYASGSEDGT----IRIWQTNP  301 (350)
Q Consensus       278 ~sp~~~~lasgs~Dg~----v~vw~~~~  301 (350)
                      |+|++.+||+|+.||+    |++||.+.
T Consensus       313 ~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         313 ASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             ECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            9999999999999986    99999864

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-35  Score=262.42  Aligned_cols=280  Identities=18%  Similarity=0.283  Sum_probs=213.6

Q ss_pred             EeeccCCce-eEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784           11 VCHGHSRPV-VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD   89 (350)
Q Consensus        11 ~~~gH~~~v-~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd   89 (350)
                      .++||++.| +|+.|     ++++||||+.|++|+|||..+++++.+|.+|.+.|++++|+++ .+|+||+.|++|++|+
T Consensus         7 tL~GH~~~vitc~~~-----~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           7 TLRGHMTSVITCLQF-----EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEECCSSSCEEEEEE-----ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred             EECCcCCCcEEEEEE-----CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence            379999987 55554     5679999999999999999999999999999999999999885 5789999999999999


Q ss_pred             CCCCCeeeeee---ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee----------------------cCC
Q 018784           90 ALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV----------------------GNS  144 (350)
Q Consensus        90 ~~~~~~~~~~~---h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~----------------------~~~  144 (350)
                      ...........   +......+.+++++.++++++.|+.|++||+.+........                      ..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d1nexb2          81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH  160 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred             ccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeec
Confidence            98877655443   23345667788999999999999999999987543221110                      111


Q ss_pred             CCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEE-EcCCcEEEEECCCcceee
Q 018784          145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVK  222 (350)
Q Consensus       145 ~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~~~~  222 (350)
                      ...+...   ..++.+++++..|+.|++||+++++.+..... ...+..+.++|++.++++ +.++.|++||.++...+.
T Consensus       161 ~~~v~~~---~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~  237 (355)
T d1nexb2         161 MASVRTV---SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY  237 (355)
T ss_dssp             SSCEEEE---EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEE
T ss_pred             ccccccc---ccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccc
Confidence            2222222   23456788899999999999999988877764 567888999999887755 568999999999988877


Q ss_pred             eeecCCCCc-eeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEE-EEcCCCCEEEEecCCCcEEEecCC
Q 018784          223 GYNMPCNTE-SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCV-RFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       223 ~~~~~~~~~-~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l-~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      .+..+.... .+.+   .+++|++|+.|+.|++||+.++...  +..|...+.++ .+++++.++++|+ |+.|+|||+.
T Consensus       238 ~~~~h~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~  311 (355)
T d1nexb2         238 TLQGHTALVGLLRL---SDKFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLR  311 (355)
T ss_dssp             EECCCSSCCCEEEE---CSSEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEEE-TTEEEEEETT
T ss_pred             cccccccccccccc---ccceeeeeeccccccccccccccee--cccccCCceEEEEEcCCCCEEEEEe-CCEEEEEECC
Confidence            776544332 3333   3679999999999999999887654  44566666555 4567777776665 8999999998


Q ss_pred             CCCcc
Q 018784          301 PPNHE  305 (350)
Q Consensus       301 ~~~~~  305 (350)
                      ..+..
T Consensus       312 tg~~~  316 (355)
T d1nexb2         312 SGKLV  316 (355)
T ss_dssp             TCCBC
T ss_pred             CCCEE
Confidence            76654

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-35  Score=262.62  Aligned_cols=269  Identities=20%  Similarity=0.326  Sum_probs=217.5

Q ss_pred             CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee------eeeccccEeEEEEcCCCCeEEEeeCCC
Q 018784           51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH------SFEHKHIVRACAFSEDTHLLLTGGFEK  124 (350)
Q Consensus        51 ~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~------~~~h~~~V~~~~~~~~~~~l~sg~~d~  124 (350)
                      .+.+.++ +|...|.+++|++++++|+||+ ||.|+|||+.+.....      ...|.+.|.+++|+|++++|++|+.|+
T Consensus        42 ~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg  119 (337)
T d1gxra_          42 ARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS  119 (337)
T ss_dssp             EEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSS
T ss_pred             ceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccc
Confidence            3455566 6999999999999999999987 8999999987654322      125888999999999999999999999


Q ss_pred             eEEEEECCCCCCCC-eeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEE
Q 018784          125 ILRIFDLNRPDAPP-REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYI  202 (350)
Q Consensus       125 ~v~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l  202 (350)
                      +|++||+....... .....|...+..++|.+ ++.++++++.|+.|++||++++++...... ..++.+++|++++.++
T Consensus       120 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~  198 (337)
T d1gxra_         120 TLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKL  198 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred             cccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999987544322 23456777888888865 567788899999999999999988777664 5689999999999877


Q ss_pred             EEE-cCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCC
Q 018784          203 TTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPG  281 (350)
Q Consensus       203 ~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~  281 (350)
                      +.+ .++.+++||+++.+.++.+........+.+.+ .++++++|+.|+.|++||+.+++.. ....|...|++++|+|+
T Consensus       199 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~  276 (337)
T d1gxra_         199 WTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYC  276 (337)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTT
T ss_pred             ccccccccccccccccceeecccccccceEEEEEcc-cccccceeccccccccccccccccc-cccccccccceEEECCC
Confidence            654 68999999999998888877666666666666 5789999999999999999988765 45689999999999999


Q ss_pred             CCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccch
Q 018784          282 GESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGK  340 (350)
Q Consensus       282 ~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~  340 (350)
                      +++|++|+.|+.|++||+...+....                -.+...|....++|+|+
T Consensus       277 g~~l~s~s~Dg~i~iwd~~~~~~~~~----------------~~~~~~v~~~~~s~d~~  319 (337)
T d1gxra_         277 GKWFVSTGKDNLLNAWRTPYGASIFQ----------------SKESSSVLSCDISVDDK  319 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTTCCEEEE----------------EECSSCEEEEEECTTSC
T ss_pred             CCEEEEEeCCCeEEEEECCCCCEEEE----------------ccCCCCEEEEEEeCCCC
Confidence            99999999999999999865443211                12345577777888775

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-34  Score=249.34  Aligned_cols=270  Identities=18%  Similarity=0.290  Sum_probs=211.9

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~   92 (350)
                      .+|...|+|+.|     ||++|||||.|++|+|||..+++++.+|.+|++.|+++++  ++.+|+||+.|++|++|++..
T Consensus        12 ~~~~~~V~c~~~-----d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2          12 SETSKGVYCLQY-----DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             CSSCCCEEEEEC-----CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred             CCCCCCEEEEEE-----cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccc
Confidence            478889998754     6889999999999999999999999999999999998876  678999999999999999988


Q ss_pred             CCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC--eeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784           93 GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--REVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (350)
Q Consensus        93 ~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i  170 (350)
                      +........... ....+.+....++++..++.+++|+........  .....+...+..+.+.   ...+.+++.|++|
T Consensus        85 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~s~d~~i  160 (293)
T d1p22a2          85 GEMLNTLIHHCE-AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTI  160 (293)
T ss_dssp             CCEEEEECCCCS-CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEE
T ss_pred             cccccccccccc-ccccccccccceeecccccceeEeeccccccccccccccccccccccceec---ccccccccCCCce
Confidence            876665544332 233445566788999999999999987654332  2234566677766654   3456788899999


Q ss_pred             EEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCC
Q 018784          171 RLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED  249 (350)
Q Consensus       171 ~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d  249 (350)
                      ++||+++++.+..+..+ ..+..+.+++ ..+++++.|+.|++||+++...+..+........  ....++.+|++|+.|
T Consensus       161 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~--~~~~~~~~l~sg~~d  237 (293)
T d1p22a2         161 KVWNTSTCEFVRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYD  237 (293)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEEET-TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE--EEECCSSEEEEEETT
T ss_pred             eeecCCCCcEEEEEcccccccccccCCC-CeEEEecCCCEEEEEecccceeeeeecccceeee--eccccceEEEEEcCC
Confidence            99999999988888754 4565555543 2344556789999999999888776655443322  223357899999999


Q ss_pred             CeEEEEEcccC---------eeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          250 MWVHVFDFHTG---------EQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       250 ~~i~v~d~~~~---------~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                      +.|++||+..+         ..+..+.+|.+.|++++|+  +.+|+|||.||+|+|||
T Consensus       238 g~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         238 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             SCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             CEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            99999998643         3567788999999999995  56899999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-34  Score=252.68  Aligned_cols=278  Identities=19%  Similarity=0.315  Sum_probs=223.3

Q ss_pred             EeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee-ccccEeEEEEcCCCCeEEEeeCC
Q 018784           45 LRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFE  123 (350)
Q Consensus        45 iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~sg~~d  123 (350)
                      .|.+. .....+|+||+++|++++|+|++.+|+|||.||+|+|||+.+++.+..+. |...|.+++|+|++.++++++.+
T Consensus         2 ~w~p~-~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~   80 (317)
T d1vyhc1           2 EWIPR-PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD   80 (317)
T ss_dssp             CCCCC-SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccCCC-CCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccc
Confidence            46443 33456899999999999999999999999999999999999998877774 89999999999999999999999


Q ss_pred             CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEE
Q 018784          124 KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYI  202 (350)
Q Consensus       124 ~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l  202 (350)
                      +.+.+|+...... ......+...+.++.+.+ ++..+++++.|+.+++||+++++.+..+.. ...+..+++++++.++
T Consensus        81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  158 (317)
T d1vyhc1          81 MTIKLWDFQGFEC-IRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI  158 (317)
T ss_dssp             SCCCEEETTSSCE-EECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             ccccccccccccc-ccccccccccceeeeccC-CCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEE
Confidence            9999999875433 233355677888888875 455677889999999999999998888875 4678899999999888


Q ss_pred             EEE-cCCcEEEEECCCcceeeeeecCCCC-ceeEe-------------------cCCCCcEEEEecCCCeEEEEEcccCe
Q 018784          203 TTA-DGSSVKFWDANHFGLVKGYNMPCNT-ESASL-------------------EPKLGNIFIAGGEDMWVHVFDFHTGE  261 (350)
Q Consensus       203 ~~~-~~~~i~vwd~~~~~~~~~~~~~~~~-~~~~~-------------------~~~~~~~l~sg~~d~~i~v~d~~~~~  261 (350)
                      +++ .++.|++|+.++......+...... ....+                   ....+.++++|+.|+.|++||+.+++
T Consensus       159 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  238 (317)
T d1vyhc1         159 ASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM  238 (317)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred             EEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCc
Confidence            764 6899999999987766554432211 11111                   11235689999999999999999999


Q ss_pred             eEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccch
Q 018784          262 QIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGK  340 (350)
Q Consensus       262 ~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~  340 (350)
                      .+..+.+|...|.+++|+|++++|++|+.||.|++||+...+...               ....+...|.++.++|+|+
T Consensus       239 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---------------~~~~h~~~V~~~~~s~~~~  302 (317)
T d1vyhc1         239 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK---------------TLNAHEHFVTSLDFHKTAP  302 (317)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE---------------EEECCSSCEEEEEECSSSS
T ss_pred             EEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEE---------------EEcCCCCCEEEEEEcCCCC
Confidence            999999999999999999999999999999999999986544322               2233455677888888875

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4e-35  Score=258.32  Aligned_cols=242  Identities=14%  Similarity=0.214  Sum_probs=201.1

Q ss_pred             EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCce--eeeccCccCCeEEEEECCCCcEEEEeeC--CCeEE
Q 018784           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCCLDANALFSASGSA--DFTAK   86 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~--~~~l~gH~~~V~~v~~~~~~~~l~s~s~--Dg~v~   86 (350)
                      ++.+|+++|.+++|+|   +|++||+|+.|++|+|||..+++.  ...+.+|.+.|.+++|++++.++++++.  +..++
T Consensus        53 ~~~~H~~~v~~~~~sp---~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~  129 (311)
T d1nr0a1          53 IYTEHSHQTTVAKTSP---SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH  129 (311)
T ss_dssp             EECCCSSCEEEEEECT---TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEE
T ss_pred             EEcCCCCCEEEEEEeC---CCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccc
Confidence            4589999999999986   999999999999999999988764  3568999999999999999999998876  46699


Q ss_pred             EeeCCCCCeeeee-eccccEeEEEEcCCCCe-EEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEE
Q 018784           87 LWDALTGDEKHSF-EHKHIVRACAFSEDTHL-LLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (350)
Q Consensus        87 vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~-l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~  164 (350)
                      ||+..+++....+ .|...|++++|+|++++ |++|+.|+.|++||+.+... ......|...|.++.|.| ++.+++++
T Consensus       130 v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~-~~~~~~~~~~i~~v~~~p-~~~~l~~~  207 (311)
T d1nr0a1         130 VFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF-KSTFGEHTKFVHSVRYNP-DGSLFAST  207 (311)
T ss_dssp             EEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-EEEECCCSSCEEEEEECT-TSSEEEEE
T ss_pred             ccccccccccccccccccccccccccccceeeeccccccccccccccccccc-ccccccccccccccccCc-cccccccc
Confidence            9999988876665 48889999999999885 78899999999999986543 344466788999999986 56678889


Q ss_pred             eCCCeEEEEECCCCceeEeecC--------CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCC--cee
Q 018784          165 TDSGGVRLWDARSGKIVQTLET--------KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNT--ESA  233 (350)
Q Consensus       165 ~~dg~i~iwd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~--~~~  233 (350)
                      +.|+.|++||+++++....+..        ..+|.+++|+|++++|+++ .|+.|++||++++++++.+..+...  ...
T Consensus       208 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~  287 (311)
T d1nr0a1         208 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL  287 (311)
T ss_dssp             ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEE
Confidence            9999999999999887776642        3579999999999988765 5889999999999988887665432  223


Q ss_pred             EecCCCCcEEEEecCCCeEEEEEcc
Q 018784          234 SLEPKLGNIFIAGGEDMWVHVFDFH  258 (350)
Q Consensus       234 ~~~~~~~~~l~sg~~d~~i~v~d~~  258 (350)
                      .+.+ .++.+++++.||.|++||++
T Consensus       288 ~~~~-~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         288 GIIW-TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEE-CSSCEEEEETTCCEEEEETT
T ss_pred             EEEe-cCCEEEEEECCCEEEEEeCC
Confidence            3333 35788999999999999963

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.3e-34  Score=252.51  Aligned_cols=278  Identities=17%  Similarity=0.135  Sum_probs=212.1

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCC-eeEeeCCC--CceeeeccCcc-CCeEEEEECC--CCcEEEEeeCCCeEEEeeCC
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSS-PMLRNGET--GDWIGTFEGHK-GAVWSCCLDA--NALFSASGSADFTAKLWDAL   91 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~-v~iw~~~~--~~~~~~l~gH~-~~V~~v~~~~--~~~~l~s~s~Dg~v~vWd~~   91 (350)
                      .+.+++|+|   +|..||.++.+.. ++.|+...  ......+.+|. ..|++++|+|  ++.++|||+.||+|+|||..
T Consensus        19 ~~t~l~~~~---~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~   95 (325)
T d1pgua1          19 FTTHLSYDP---TTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT   95 (325)
T ss_dssp             CCCCCEEET---TTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred             CeEEEEECC---CCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeec
Confidence            356788886   8888988876543 56677543  34466788885 6799999987  67899999999999999986


Q ss_pred             CCCeeee---------eeccccEeEEEEcCCCCeEEEee--CCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcE
Q 018784           92 TGDEKHS---------FEHKHIVRACAFSEDTHLLLTGG--FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (350)
Q Consensus        92 ~~~~~~~---------~~h~~~V~~~~~~~~~~~l~sg~--~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  160 (350)
                      .+.....         ..|.+.|.+++|+++++++++++  .++.+++|+..++.. ......|...+.+++|.+.+..+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~  174 (325)
T d1pgua1          96 FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS-LGEVSGHSQRINACHLKQSRPMR  174 (325)
T ss_dssp             EEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCE-EEECCSCSSCEEEEEECSSSSCE
T ss_pred             CCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccccc-ceeeeecccccccccccccccce
Confidence            5442221         13678899999999999988765  477899999876543 33445688899999999888888


Q ss_pred             EEEEeCCCeEEEEECCCCceeEeecC----CCCeEEEEEecC-CcEEE-EEcCCcEEEEECCCcceeeeeecCCCCc---
Q 018784          161 LSSCTDSGGVRLWDARSGKIVQTLET----KSPVTSAEVSRD-GRYIT-TADGSSVKFWDANHFGLVKGYNMPCNTE---  231 (350)
Q Consensus       161 ~~s~~~dg~i~iwd~~~~~~~~~~~~----~~~v~~~~~~~~-~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~---  231 (350)
                      +++++.|+.|++||+++++....+..    ...+.+++|+|+ +.+++ ++.|+.|++||+++...++.+..+....   
T Consensus       175 ~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~  254 (325)
T d1pgua1         175 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGG  254 (325)
T ss_dssp             EEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSC
T ss_pred             EEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccc
Confidence            89999999999999998876665543    356999999996 56665 4578999999999988887766443221   


Q ss_pred             eeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcC--EEEEEEcCC-CCEEEEecCCCcEEEecC
Q 018784          232 SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGP--VHCVRFSPG-GESYASGSEDGTIRIWQT  299 (350)
Q Consensus       232 ~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~--v~~l~~sp~-~~~lasgs~Dg~v~vw~~  299 (350)
                      ..+....++++|++++.|+.|+|||+.+++.+..+..|...  +..+++.+. +.+|++||.||.|++||+
T Consensus       255 ~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         255 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             eeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            22222245789999999999999999999998887665543  344444432 347899999999999985

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.1e-33  Score=249.05  Aligned_cols=275  Identities=22%  Similarity=0.317  Sum_probs=213.1

Q ss_pred             EEEEeCCCCeeEeeCCCCcee----eeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee----------
Q 018784           34 LVSASKDSSPMLRNGETGDWI----GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF----------   99 (350)
Q Consensus        34 lasgs~d~~v~iw~~~~~~~~----~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~----------   99 (350)
                      .+.+..++...+|+....+..    ....+|++.|++++|+++|++||+|+ |++|+|||+.+++....+          
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~  109 (388)
T d1erja_          31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP  109 (388)
T ss_dssp             TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------
T ss_pred             ccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccc
Confidence            356778889999997654322    22236999999999999999999986 999999999888765543          


Q ss_pred             ---------eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784          100 ---------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (350)
Q Consensus       100 ---------~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i  170 (350)
                               .|...|++++|+|++++|++|+.|+.|++||....... .....|...|.++.+.+ ++..+++++.++.+
T Consensus       110 ~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~-~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i  187 (388)
T d1erja_         110 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV-MILQGHEQDIYSLDYFP-SGDKLVSGSGDRTV  187 (388)
T ss_dssp             ---------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEE
T ss_pred             cccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccc-ccccccccccccccccc-ccccccccccceee
Confidence                     25667999999999999999999999999998765432 34456788899999876 45567788899999


Q ss_pred             EEEECCCCceeEeecCCCCeEEEEEec-CCcEEEE-EcCCcEEEEECCCcceeeeeecCC--------CCceeEecCCCC
Q 018784          171 RLWDARSGKIVQTLETKSPVTSAEVSR-DGRYITT-ADGSSVKFWDANHFGLVKGYNMPC--------NTESASLEPKLG  240 (350)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~-~~~~~i~vwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~  240 (350)
                      ++||+++...............+.+.+ ++.++++ +.++.|++||.++......+....        ....+.+.+ ++
T Consensus       188 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~  266 (388)
T d1erja_         188 RIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DG  266 (388)
T ss_dssp             EEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TS
T ss_pred             eeeeccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC-CC
Confidence            999999998888877777777777765 6777765 568999999999877665543221        123445554 58


Q ss_pred             cEEEEecCCCeEEEEEcccCee------------EEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCC
Q 018784          241 NIFIAGGEDMWVHVFDFHTGEQ------------IGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENH  308 (350)
Q Consensus       241 ~~l~sg~~d~~i~v~d~~~~~~------------~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~  308 (350)
                      ++|++|+.|+.|++||+.++..            ......|...|.+++|+|++++|++|+.||.|++||+...+.....
T Consensus       267 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l  346 (388)
T d1erja_         267 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML  346 (388)
T ss_dssp             SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             CEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence            8999999999999999876543            3345678999999999999999999999999999999877665444


Q ss_pred             CCCC
Q 018784          309 SGTG  312 (350)
Q Consensus       309 ~~~~  312 (350)
                      .+|.
T Consensus       347 ~~H~  350 (388)
T d1erja_         347 QGHR  350 (388)
T ss_dssp             ECCS
T ss_pred             eCCC
Confidence            4443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.1e-33  Score=242.32  Aligned_cols=264  Identities=14%  Similarity=0.158  Sum_probs=199.2

Q ss_pred             EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~   90 (350)
                      +++||.++|++++|+|       |+|||.|++|++||..++     ..+|++.|.+++++++. .+++++.|++|++|+.
T Consensus         8 ~l~gH~~~I~~l~~s~-------l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~   74 (287)
T d1pgua2           8 TISGHNKGITALTVNP-------LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGI   74 (287)
T ss_dssp             EECCCSSCEEEEETTT-------TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEETTE
T ss_pred             EECCCCCceEEEEECc-------EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeeccccccccc
Confidence            4689999999999975       799999999999998754     46899999999998665 5689999999999997


Q ss_pred             CCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784           91 LTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (350)
Q Consensus        91 ~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i  170 (350)
                      ...      .....+..+.+++++..+++++ ++.+.+|+..+.......  .....+.+  +.+.+..+++++.+++.+
T Consensus        75 ~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~v~~~~~~~v  143 (287)
T d1pgua2          75 TKH------EFGSQPKVASANNDGFTAVLTN-DDDLLILQSFTGDIIKSV--RLNSPGSA--VSLSQNYVAVGLEEGNTI  143 (287)
T ss_dssp             EEE------ECSSCEEEEEECSSSEEEEEET-TSEEEEEETTTCCEEEEE--ECSSCEEE--EEECSSEEEEEETTTSCE
T ss_pred             ccc------ccccceeeeeeccCCceEEEee-cccceeeeccceeeeeec--cccceeee--eeccCcceeeecccccee
Confidence            532      2334577888999887776654 556788887655432222  22333433  344556666666666789


Q ss_pred             EEEECCCCceeEeec--CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeee-eecCCC-CceeEecC--------
Q 018784          171 RLWDARSGKIVQTLE--TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKG-YNMPCN-TESASLEP--------  237 (350)
Q Consensus       171 ~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~-~~~~~~-~~~~~~~~--------  237 (350)
                      ++|++...+....+.  ...++++++|+|++.+|+++ .++.|++||+.+...+.. +..+.. ...+.+.|        
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~  223 (287)
T d1pgua2         144 QVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE  223 (287)
T ss_dssp             EEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------
T ss_pred             eeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccc
Confidence            999998776655554  34679999999999988765 688999999988765432 222222 22333433        


Q ss_pred             -CCCcEEEEecCCCeEEEEEccc-CeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          238 -KLGNIFIAGGEDMWVHVFDFHT-GEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       238 -~~~~~l~sg~~d~~i~v~d~~~-~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                       .++.++++|+.|+.|++||+.+ ++.+..+.+|...|++++|+|++ .|+|+|.|++|++|++
T Consensus       224 ~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         224 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             cCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence             3467999999999999999977 55677788999999999999986 5889999999999985

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.1e-31  Score=234.73  Aligned_cols=271  Identities=19%  Similarity=0.371  Sum_probs=214.0

Q ss_pred             ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEE
Q 018784           52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFD  130 (350)
Q Consensus        52 ~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd  130 (350)
                      +..++|+||+++|++++|+|++.+||||+.||+|+|||+.+++....+. |...|.+++|+|++.++++|+.|+.+++|+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN  125 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccc
Confidence            5667899999999999999999999999999999999999998877764 888999999999999999999999999999


Q ss_pred             CCCCCCCCe---eecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec-CCCCeEEEEEecCCcEEEEE-
Q 018784          131 LNRPDAPPR---EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA-  205 (350)
Q Consensus       131 ~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-  205 (350)
                      .........   ....+..........  ....+.....|.....|+........... ....+....+.+.+.+++++ 
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA  203 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccceecccccccccccccc--cccccccccccccccccccccccccccccccceeEeeeccccccceeEEee
Confidence            865443322   233445544444433  33456667788899999987765544443 45677888888888776654 


Q ss_pred             cCCcEEEEECCCcceeeeeecCCCC-ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEee--cCCCcCEEEEEEcCCC
Q 018784          206 DGSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCN--KGHHGPVHCVRFSPGG  282 (350)
Q Consensus       206 ~~~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~--~~h~~~v~~l~~sp~~  282 (350)
                      .++.|++||+++..++..+..+... ..+.+.| ++++|++|+.|+.|++||+.....+..+  ..|...|.+++|+|++
T Consensus       204 ~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  282 (340)
T d1tbga_         204 CDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG  282 (340)
T ss_dssp             TTTEEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSS
T ss_pred             cCceEEEEECCCCcEEEEEeCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCC
Confidence            6899999999999888877665443 3455555 6899999999999999999988877655  4667789999999999


Q ss_pred             CEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccch
Q 018784          283 ESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGK  340 (350)
Q Consensus       283 ~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~  340 (350)
                      ++|++|+.||.|++||+...+....               ...+...|.++.++|||+
T Consensus       283 ~~l~~g~~dg~i~iwd~~~~~~~~~---------------~~~H~~~V~~l~~s~d~~  325 (340)
T d1tbga_         283 RLLLAGYDDFNCNVWDALKADRAGV---------------LAGHDNRVSCLGVTDDGM  325 (340)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEE---------------ECCCSSCEEEEEECTTSS
T ss_pred             CEEEEEECCCEEEEEECCCCcEEEE---------------EcCCCCCEEEEEEeCCCC
Confidence            9999999999999999876544332               233455677888888875

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.7e-32  Score=236.71  Aligned_cols=247  Identities=17%  Similarity=0.244  Sum_probs=193.8

Q ss_pred             CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee--eccccEeEEEEcCCCCeEEEeeCCCeEEE
Q 018784           51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF--EHKHIVRACAFSEDTHLLLTGGFEKILRI  128 (350)
Q Consensus        51 ~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~--~h~~~V~~~~~~~~~~~l~sg~~d~~v~v  128 (350)
                      |+..+++.||.+.|++++|+|++++|+||+.||+|++||+.+++....+  .|...|.+++|+|+++ +++++.|+.+++
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~   80 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKV   80 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEE
Confidence            5677899999999999999999999999999999999999998877766  4888999999999987 556778999999


Q ss_pred             EECCCCCCC--CeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEE-E
Q 018784          129 FDLNRPDAP--PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-A  205 (350)
Q Consensus       129 wd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~  205 (350)
                      |++......  ......+...+..+++++++. +++++. ++.+++|+...   .........+..++++|+++++++ +
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~-~~~~~~-~~~i~~~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~  155 (299)
T d1nr0a2          81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGD-IAVAAC-YKHIAIYSHGK---LTEVPISYNSSCVALSNDKQFVAVGG  155 (299)
T ss_dssp             ECSSSSSSCTTSCCEEECSSCEEEEEECTTSS-CEEEEE-SSEEEEEETTE---EEEEECSSCEEEEEECTTSCEEEEEE
T ss_pred             eccCCccccccccccccccccccccccccccc-cccccc-ccccccccccc---cccccccccccccccccccccccccc
Confidence            998653321  122334567788899886554 444444 46899999543   233344556788999999988766 4


Q ss_pred             cCCcEEEEECCCcceeee--eecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEE---eecCCCcCEEEEEEcC
Q 018784          206 DGSSVKFWDANHFGLVKG--YNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG---CNKGHHGPVHCVRFSP  280 (350)
Q Consensus       206 ~~~~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~---~~~~h~~~v~~l~~sp  280 (350)
                      .++.|++||+++......  .........+.+.+ +++++++++.|+.|++||+.++....   .+.+|..+|++++|+|
T Consensus       156 ~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~  234 (299)
T d1nr0a2         156 QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP  234 (299)
T ss_dssp             TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT
T ss_pred             cccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            689999999987654432  22223334555555 57899999999999999998876543   4567999999999999


Q ss_pred             CCCEEEEecCCCcEEEecCCCCCc
Q 018784          281 GGESYASGSEDGTIRIWQTNPPNH  304 (350)
Q Consensus       281 ~~~~lasgs~Dg~v~vw~~~~~~~  304 (350)
                      ++++|++|+.|+.|++||+..+..
T Consensus       235 ~~~~l~sgs~dg~i~iwd~~~~~~  258 (299)
T d1nr0a2         235 DNVRLATGSLDNSVIVWNMNKPSD  258 (299)
T ss_dssp             TSSEEEEEETTSCEEEEETTCTTS
T ss_pred             cccceEEEcCCCEEEEEECCCCCc
Confidence            999999999999999999876543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-31  Score=235.46  Aligned_cols=277  Identities=20%  Similarity=0.293  Sum_probs=205.3

Q ss_pred             EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccC--CeEEEEECCCCcEEEEeeCCCeEEEe
Q 018784           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG--AVWSCCLDANALFSASGSADFTAKLW   88 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~--~V~~v~~~~~~~~l~s~s~Dg~v~vW   88 (350)
                      .+.||+++|++++|+|   + .+|++|+.|+++++|+....+.......+..  .+....+.+++.++++++.|++|++|
T Consensus        48 ~l~~H~~~V~~l~~s~---~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw  123 (355)
T d1nexb2          48 QLSGHDGGVWALKYAH---G-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW  123 (355)
T ss_dssp             EEECCSSCEEEEEEET---T-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             EEECCCCCEEEEEEcC---C-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEE
Confidence            3589999999999985   4 4799999999999999998887766554433  34555678899999999999999999


Q ss_pred             eCCCCCeeeeee------------------------ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCC
Q 018784           89 DALTGDEKHSFE------------------------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS  144 (350)
Q Consensus        89 d~~~~~~~~~~~------------------------h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~  144 (350)
                      |+.+........                        |...+  ..+.+++++++++..|+.|++||+.+.... .....+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~-~~~~~~  200 (355)
T d1nexb2         124 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCL-YILSGH  200 (355)
T ss_dssp             ECCC-----------CCCEEESCTTTCTTEEEEEECCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEE-EEECCC
T ss_pred             EccCCceeccccccceeccceeccccccceeeeeeeccccc--cccccccceeeeecccceeeeeecccccce-eeeecc
Confidence            987654322111                        22222  345567889999999999999999765432 233455


Q ss_pred             CCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeee
Q 018784          145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKG  223 (350)
Q Consensus       145 ~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~  223 (350)
                      ...+.++.+.+. +..+++++.|++|++||++++..+..+..+ ..+.++.++++ .+++++.|+.|++||+++......
T Consensus       201 ~~~~~~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~  278 (355)
T d1nexb2         201 TDRIYSTIYDHE-RKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK-FLVSAAADGSIRGWDANDYSRKFS  278 (355)
T ss_dssp             SSCEEEEEEETT-TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECSS-EEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cccccccccccc-ceeeecccccceEEeeeccccccccccccccccccccccccc-eeeeeecccccccccccccceecc
Confidence            667788888754 556778889999999999999998888754 57888887652 344455789999999998765544


Q ss_pred             eecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEE-eecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          224 YNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG-CNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~-~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                      .... ....+.+.+.++.++++| .|+.|++||+++++++. .+.+|..+|++++|+|+ .++++++.||.++||.+
T Consensus       279 ~~~~-~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         279 YHHT-NLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             EECT-TCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             cccC-CceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            4332 222333334456666665 58999999999999875 46789999999999987 57889999999877754

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1e-31  Score=241.99  Aligned_cols=237  Identities=12%  Similarity=0.131  Sum_probs=186.1

Q ss_pred             cCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC--eeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCC
Q 018784           61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGD--EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP  137 (350)
Q Consensus        61 ~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~--~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~  137 (350)
                      .++|.|++|+|++.++|+|+.||.|+|||..+++  ....+ .|...|++++|+|++++|++|+.|++|++||+......
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence            3789999999999999999999999999997765  33444 58999999999999999999999999999999754432


Q ss_pred             C-eeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEe----ec-CCCCeEEEEEecCCcEEEEE-cCCcE
Q 018784          138 P-REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQT----LE-TKSPVTSAEVSRDGRYITTA-DGSSV  210 (350)
Q Consensus       138 ~-~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~----~~-~~~~v~~~~~~~~~~~l~~~-~~~~i  210 (350)
                      . .....+...+.+++|.| ++..+++++.|++|++|++........    .. +...+.+++|+|++++|+++ .|+.|
T Consensus        87 ~~~~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v  165 (371)
T d1k8kc_          87 PTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC  165 (371)
T ss_dssp             EEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccccccccccccccccccc-ccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEE
Confidence            2 22345778899999986 456778889999999999876543222    22 35679999999999988765 68999


Q ss_pred             EEEECCCccee------------------eeeecCCC-CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCc
Q 018784          211 KFWDANHFGLV------------------KGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHG  271 (350)
Q Consensus       211 ~vwd~~~~~~~------------------~~~~~~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~  271 (350)
                      ++||.......                  .....+.. ...+.+.+ ++++|++++.|+.|++||+.++..+..+..|..
T Consensus       166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  244 (371)
T d1k8kc_         166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVATLASETL  244 (371)
T ss_dssp             EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC
T ss_pred             EEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec-ccccccccccCCcceEEeeecccceeeeecccc
Confidence            99998653211                  11111111 23445555 578999999999999999999999999999999


Q ss_pred             CEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          272 PVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       272 ~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      +|.+++|+|++++|++|+ |+.+++|..+
T Consensus       245 ~v~s~~fs~d~~~la~g~-d~~~~~~~~~  272 (371)
T d1k8kc_         245 PLLAVTFITESSLVAAGH-DCFPVLFTYD  272 (371)
T ss_dssp             CEEEEEEEETTEEEEEET-TSSCEEEEEE
T ss_pred             cceeeeecCCCCEEEEEc-CCceEEEEee
Confidence            999999999998888766 6777776543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.6e-31  Score=233.42  Aligned_cols=245  Identities=14%  Similarity=0.205  Sum_probs=191.4

Q ss_pred             eecc-CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCcee--------eeccCccCCeEEEEECCCCcEEEEee--
Q 018784           12 CHGH-SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI--------GTFEGHKGAVWSCCLDANALFSASGS--   80 (350)
Q Consensus        12 ~~gH-~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~--------~~l~gH~~~V~~v~~~~~~~~l~s~s--   80 (350)
                      +.|| ..+|++++|+|. .+|.+||+|+.|++|+|||...++..        ..+..|.++|.+++|++++.++++++  
T Consensus        58 ~~gh~~~~v~~v~fsP~-~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~  136 (325)
T d1pgua1          58 FTGHGSSVVTTVKFSPI-KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG  136 (325)
T ss_dssp             ECTTTTSCEEEEEECSS-TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred             EeCCCCCCEEEEEEeeC-CCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecc
Confidence            4687 568999999973 36789999999999999997654432        23467889999999999999887665  


Q ss_pred             CCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCe-EEEeeCCCeEEEEECCCCCCCCee--ecCCCCcEEEEEEeCC
Q 018784           81 ADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHL-LLTGGFEKILRIFDLNRPDAPPRE--VGNSSGSIRTVAWLHS  156 (350)
Q Consensus        81 ~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~-l~sg~~d~~v~vwd~~~~~~~~~~--~~~~~~~v~~~~~~~~  156 (350)
                      .|+.+++|+..+++....+ .|...|.+++|+|++.+ +++++.|+.+++||+.........  ...+...|.+++|+|+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd  216 (325)
T d1pgua1         137 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD  216 (325)
T ss_dssp             SSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST
T ss_pred             ccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccc
Confidence            4788999999988877776 48999999999998875 678999999999998654322221  2345677999999987


Q ss_pred             CCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEe---cCCcEE-EEEcCCcEEEEECCCcceeeeeecCCCCc
Q 018784          157 DQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVS---RDGRYI-TTADGSSVKFWDANHFGLVKGYNMPCNTE  231 (350)
Q Consensus       157 ~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~---~~~~~l-~~~~~~~i~vwd~~~~~~~~~~~~~~~~~  231 (350)
                      .+.++++++.|++|++||+++++.+..+..+ .++..+.|+   |++++| +++.|+.|++||+++.++++.+..+....
T Consensus       217 ~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~  296 (325)
T d1pgua1         217 SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL  296 (325)
T ss_dssp             TCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCG
T ss_pred             cceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcc
Confidence            7889999999999999999999999888753 334333333   566655 45678999999999999988887655432


Q ss_pred             ---eeEecCCCCcEEEEecCCCeEEEEEc
Q 018784          232 ---SASLEPKLGNIFIAGGEDMWVHVFDF  257 (350)
Q Consensus       232 ---~~~~~~~~~~~l~sg~~d~~i~v~d~  257 (350)
                         ...+.+..+.++++|+.|+.|++||+
T Consensus       297 ~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         297 GNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             GGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             cCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence               23333334568999999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-30  Score=236.19  Aligned_cols=271  Identities=16%  Similarity=0.179  Sum_probs=197.0

Q ss_pred             EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCce------eeeccCccCCeEEEEE------C-CCCcEEE
Q 018784           11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW------IGTFEGHKGAVWSCCL------D-ANALFSA   77 (350)
Q Consensus        11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~------~~~l~gH~~~V~~v~~------~-~~~~~l~   77 (350)
                      +.+||.++|+++++++     ++++|+|.|++|+|||..+.+.      ......|...+..+..      + .+..+++
T Consensus         9 ~~~~H~~~I~~v~~~~-----~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN-----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             ESSCSSSCEEEEEECS-----SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             cCCcccCccEEEEEeC-----CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            4589999999998753     4899999999999999765432      1222345554433321      1 1345788


Q ss_pred             EeeCCCeEEEeeCCCCCeeeee-----------eccccEeEEEEcCC-----CCeEEEeeCCCeEEEEECCCCCC-----
Q 018784           78 SGSADFTAKLWDALTGDEKHSF-----------EHKHIVRACAFSED-----THLLLTGGFEKILRIFDLNRPDA-----  136 (350)
Q Consensus        78 s~s~Dg~v~vWd~~~~~~~~~~-----------~h~~~V~~~~~~~~-----~~~l~sg~~d~~v~vwd~~~~~~-----  136 (350)
                      +++.||.|++|++........+           .++..+..+++.++     +.++++++.|+++++|++.....     
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~  163 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL  163 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccccee
Confidence            9999999999997544321111           14455777777665     46889999999999999743210     


Q ss_pred             ----CC--------eeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec-------CCCCeEEEEEec
Q 018784          137 ----PP--------REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-------TKSPVTSAEVSR  197 (350)
Q Consensus       137 ----~~--------~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~v~~~~~~~  197 (350)
                          ..        .....+...+.+++|+++ + ++++|+.|++|++||+++++++..+.       +..+|++++|+|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-g-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  241 (393)
T d1sq9a_         164 TLNWSPTLELQGTVESPMTPSQFATSVDISER-G-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP  241 (393)
T ss_dssp             TTCCCCEEEEEEEECCSSSSCCCCCEEEECTT-S-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred             eeeeccceecccceecccCCCCcEEEEEECCC-C-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc
Confidence                00        011123445778888764 3 78899999999999999998876654       346899999999


Q ss_pred             CCcEEEEEc-CC---cEEEEECCCcceeeeeec-------------CCC-CceeEecCCCCcEEEEecCCCeEEEEEccc
Q 018784          198 DGRYITTAD-GS---SVKFWDANHFGLVKGYNM-------------PCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (350)
Q Consensus       198 ~~~~l~~~~-~~---~i~vwd~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~  259 (350)
                      ++++|+++. |+   .|++||+.+...+..+..             +.. ...+.+.| ++++|++|+.|++|++||+.+
T Consensus       242 dg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd~~~  320 (393)
T d1sq9a_         242 QGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKT  320 (393)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTT
T ss_pred             ccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCC-CCCeeEEECCCCEEEEEECCC
Confidence            999988764 44   499999998877766542             111 23455655 589999999999999999999


Q ss_pred             CeeEEeecCCCcCEE----EEEEcCCCCEEEEec
Q 018784          260 GEQIGCNKGHHGPVH----CVRFSPGGESYASGS  289 (350)
Q Consensus       260 ~~~~~~~~~h~~~v~----~l~~sp~~~~lasgs  289 (350)
                      |+++.++.+|...|.    .++|+|++..+++++
T Consensus       321 g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         321 KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             CCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence            999999999998775    478888888777655

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.7e-31  Score=233.06  Aligned_cols=283  Identities=11%  Similarity=0.045  Sum_probs=200.6

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCcee---eeccCccCCeEEEEECCC-CcEEEEeeCCCeEEE
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI---GTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKL   87 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~---~~l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~v   87 (350)
                      .++|++.|++|+|+|   ++.+||+||.|++|+|||+.++...   ....+|.++|.+++|+++ +.++++|+.||+|++
T Consensus         7 ~~~h~d~I~~l~fsp---~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~   83 (342)
T d1yfqa_           7 EQAPKDYISDIKIIP---SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK   83 (342)
T ss_dssp             SSCCSSCEEEEEEEG---GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred             CCCCCCCEEEEEEeC---CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceee
Confidence            589999999999997   9999999999999999998665432   233479999999999875 568999999999999


Q ss_pred             eeCCCCCeeeeee--ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecC-----CCCcEEEEEEeCCCCcE
Q 018784           88 WDALTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN-----SSGSIRTVAWLHSDQTI  160 (350)
Q Consensus        88 Wd~~~~~~~~~~~--h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~  160 (350)
                      |+...........  +........+.++...+++++.|+++++||+............     .......+.+. .....
T Consensus        84 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  162 (342)
T d1yfqa_          84 VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD-TNSSR  162 (342)
T ss_dssp             ECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE-ECSSE
T ss_pred             eecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeee-ccCCc
Confidence            9998776555543  3333455566778889999999999999998644332222111     11112222333 34556


Q ss_pred             EEEEeCCCeEEEEECCCCceeEee----cCCCCeEEEEEec-CCcEE-EEEcCCcEEEEECCCcceeee------eec--
Q 018784          161 LSSCTDSGGVRLWDARSGKIVQTL----ETKSPVTSAEVSR-DGRYI-TTADGSSVKFWDANHFGLVKG------YNM--  226 (350)
Q Consensus       161 ~~s~~~dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~-~~~~l-~~~~~~~i~vwd~~~~~~~~~------~~~--  226 (350)
                      +++++.|++|++||++..+.....    ..........+.+ ++..+ +.+.++.+.+|+.........      +..  
T Consensus       163 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~  242 (342)
T d1yfqa_         163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHR  242 (342)
T ss_dssp             EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred             eeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeee
Confidence            778889999999999876543222    2334455555554 44444 456789999998754322110      000  


Q ss_pred             -------CC-CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784          227 -------PC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ  298 (350)
Q Consensus       227 -------~~-~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~  298 (350)
                             .. ....+.+.| ++++|++|+.||.|++||+.+++.+..+..+. .+..++|+|++++|++++.|+.+++|.
T Consensus       243 ~~~~~~~~~~~v~~l~~sp-~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~-~~~~~~~s~~~~~l~~a~sdd~~~~~~  320 (342)
T d1yfqa_         243 LNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTFKTNA  320 (342)
T ss_dssp             CCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCS-SSEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred             eccCCCcccccceeEEecC-CccEEEEECCCCEEEEEECCCCcEEEEecCCC-CCEEEEEEeCCCEEEEEEcCCcEEEee
Confidence                   01 112445665 57899999999999999999999988775432 345577888999999999999999996


Q ss_pred             CC
Q 018784          299 TN  300 (350)
Q Consensus       299 ~~  300 (350)
                      ..
T Consensus       321 ~~  322 (342)
T d1yfqa_         321 AI  322 (342)
T ss_dssp             SS
T ss_pred             ee
Confidence            53

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.7e-29  Score=220.61  Aligned_cols=249  Identities=20%  Similarity=0.312  Sum_probs=195.6

Q ss_pred             eeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCC
Q 018784           46 RNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEK  124 (350)
Q Consensus        46 w~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~  124 (350)
                      |+..+.++.++|+||++.|.+ +++++|++|||||.||+|+|||+.+++.+.++ .|...|.+++|+|+  +|++|+.|+
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~   77 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDR   77 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTS
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecc
Confidence            555667788899999999865 46778999999999999999999999988776 48999999999875  899999999


Q ss_pred             eEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEE
Q 018784          125 ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT  204 (350)
Q Consensus       125 ~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  204 (350)
                      ++++|+....... .........+.....   ....+..+..|+++.+|+.++++....+................++..
T Consensus        78 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (342)
T d2ovrb2          78 TLKVWNAETGECI-HTLYGHTSTVRCMHL---HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSG  153 (342)
T ss_dssp             CEEEEETTTTEEE-EEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEE
T ss_pred             cccccccccccce-ecccccceeEeeeec---ccccccccccceeEEEeecccccceeeeecccccceeeccccceeeee
Confidence            9999998754322 222233334444433   234566778899999999999988777776655555555555667777


Q ss_pred             EcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCE
Q 018784          205 ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGES  284 (350)
Q Consensus       205 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~  284 (350)
                      +.++.|++||.+....+..+..+....  .....++.++++|+.|+.|++||+..++.+..+.+|...+.++++++  ++
T Consensus       154 ~~d~~i~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~  229 (342)
T d2ovrb2         154 AYDFMVKVWDPETETCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NI  229 (342)
T ss_dssp             ETTSCEEEEEGGGTEEEEEECCCSSCE--EEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TE
T ss_pred             cCCCeEEEeecccceeeEEEcCccccc--ccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CE
Confidence            889999999998887776665443222  22223578999999999999999999999999999999999988865  59


Q ss_pred             EEEecCCCcEEEecCCCCCcc
Q 018784          285 YASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       285 lasgs~Dg~v~vw~~~~~~~~  305 (350)
                      |++|+.|+.|++|+....+..
T Consensus       230 l~s~s~d~~i~iwd~~~~~~~  250 (342)
T d2ovrb2         230 LVSGNADSTVKIWDIKTGQCL  250 (342)
T ss_dssp             EEEEETTSCEEEEETTTCCEE
T ss_pred             EEEEcCCCEEEEEeccccccc
Confidence            999999999999998765543

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8.8e-30  Score=223.31  Aligned_cols=254  Identities=14%  Similarity=0.097  Sum_probs=183.3

Q ss_pred             ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe----eeeeeccccEeEEEEcCC-CCeEEEeeCCCeE
Q 018784           52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE----KHSFEHKHIVRACAFSED-THLLLTGGFEKIL  126 (350)
Q Consensus        52 ~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~----~~~~~h~~~V~~~~~~~~-~~~l~sg~~d~~v  126 (350)
                      +.+..+++|++.|++++|+|++.+|||||.||+|||||+.++..    ...+.|...|.+++|+|+ +.+|++|+.|++|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            34567889999999999999999999999999999999876543    333469999999999986 5688999999999


Q ss_pred             EEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEee----cC---CCCeEEEEEecCC
Q 018784          127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL----ET---KSPVTSAEVSRDG  199 (350)
Q Consensus       127 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~----~~---~~~v~~~~~~~~~  199 (350)
                      ++|++............+.... ...+...+...+++++.|+++++||++++......    ..   ........+.+++
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLG-ICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSC-EEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             eeeecccccccccccccccccc-cccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence            9999976544333323333333 33333456677888899999999998765322221    11   1233445566666


Q ss_pred             cEE-EEEcCCcEEEEECCCcceeeeeec----CCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeE---------E-
Q 018784          200 RYI-TTADGSSVKFWDANHFGLVKGYNM----PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI---------G-  264 (350)
Q Consensus       200 ~~l-~~~~~~~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~---------~-  264 (350)
                      ..+ .++.++.|++||++..........    ..........+..+..+++++.|+.+.+|++......         . 
T Consensus       161 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~  240 (342)
T d1yfqa_         161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee
Confidence            555 456789999999987654332221    1122334455566789999999999999997643211         1 


Q ss_pred             -----eecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCccc
Q 018784          265 -----CNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEE  306 (350)
Q Consensus       265 -----~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~  306 (350)
                           ...+|...|++++|+|++++||||+.||.|++||+...+.+.
T Consensus       241 ~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~  287 (342)
T d1yfqa_         241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK  287 (342)
T ss_dssp             CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred             eeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEE
Confidence                 123567789999999999999999999999999998766554

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=7.4e-30  Score=226.95  Aligned_cols=276  Identities=12%  Similarity=0.055  Sum_probs=208.4

Q ss_pred             EEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCC--eEEEeeCCCCCeeee
Q 018784           21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF--TAKLWDALTGDEKHS   98 (350)
Q Consensus        21 ~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg--~v~vWd~~~~~~~~~   98 (350)
                      .-.|||  .||+++|+++. +.+++|+.+.++....  +|...|.+++|+||+++|++++.|.  .|++||..+++....
T Consensus         7 ~~~fSP--~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~   81 (360)
T d1k32a3           7 AEDFSP--LDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKF   81 (360)
T ss_dssp             EEEEEE--CGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEEC
T ss_pred             cccccC--CCCCEEEEEEC-CeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEe
Confidence            345664  38999999875 7999999988887653  6999999999999999988776664  799999999888877


Q ss_pred             eeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEE---------eCCCe
Q 018784           99 FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC---------TDSGG  169 (350)
Q Consensus        99 ~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~---------~~dg~  169 (350)
                      ..|...|.+++|+|++++|++++.++.+++|++..... ......+...+.+++|++++..++.+.         ..++.
T Consensus        82 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~  160 (360)
T d1k32a3          82 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP-TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA  160 (360)
T ss_dssp             CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred             eCCCceEEeeeecccccccceeccccccccccccccce-eeeeecccccccchhhccceeeeeeeccccccceeeccccc
Confidence            78999999999999999999999999999999986543 334456677788899987666555432         34567


Q ss_pred             EEEEECCCCceeEeecCCCCeEEEEEecCCcEEEE-EcCCcEEEEECCCccee-------eeeecCCC------------
Q 018784          170 VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLV-------KGYNMPCN------------  229 (350)
Q Consensus       170 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~~~-------~~~~~~~~------------  229 (350)
                      +++||+.+++..........+..+.++|+|++|+. +.++.+++||.......       ........            
T Consensus       161 ~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  240 (360)
T d1k32a3         161 IHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM  240 (360)
T ss_dssp             EEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGG
T ss_pred             eeeeccccCceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcC
Confidence            99999999988777777788889999999998765 45778899986543221       11100000            


Q ss_pred             ------------------------C-ceeEecC------------CCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcC
Q 018784          230 ------------------------T-ESASLEP------------KLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGP  272 (350)
Q Consensus       230 ------------------------~-~~~~~~~------------~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~  272 (350)
                                              . ..+...+            ....++++++.++.|++||+.+++..    .|.+.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~  316 (360)
T d1k32a3         241 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNN  316 (360)
T ss_dssp             SCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEE
T ss_pred             cccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCC
Confidence                                    0 0000000            00123445667889999999887643    34566


Q ss_pred             EEEEEEcCCCCEEEEecCCCcEEEecCCCCCccc
Q 018784          273 VHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEE  306 (350)
Q Consensus       273 v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~  306 (350)
                      |.+++|||||++|++++.||.|++||+..++.+.
T Consensus       317 v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~  350 (360)
T d1k32a3         317 LTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER  350 (360)
T ss_dssp             EEEEEECTTSCEEEEEETTSCEEEEESSCTTSCE
T ss_pred             cCEEEECCCCCEEEEEECCCeEEEEECCCCCcce
Confidence            9999999999999999999999999998766543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.8e-29  Score=225.46  Aligned_cols=285  Identities=18%  Similarity=0.263  Sum_probs=194.9

Q ss_pred             eeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe-------eeeeeccccEeE------EEEcC-CCCeEEEe
Q 018784           55 GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE-------KHSFEHKHIVRA------CAFSE-DTHLLLTG  120 (350)
Q Consensus        55 ~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~-------~~~~~h~~~V~~------~~~~~-~~~~l~sg  120 (350)
                      ...++|.+.|++++++  +.+++|+|.|++|||||..+.+.       .....|+..+..      +...+ +..+++++
T Consensus         8 ~~~~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           8 NAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             EESSCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            4568999999999986  46899999999999999765532       112223333222      22222 34577899


Q ss_pred             eCCCeEEEEECCCCCCCCeee---------cCCCCcEEEEEEeCCC----CcEEEEEeCCCeEEEEECCCCc--------
Q 018784          121 GFEKILRIFDLNRPDAPPREV---------GNSSGSIRTVAWLHSD----QTILSSCTDSGGVRLWDARSGK--------  179 (350)
Q Consensus       121 ~~d~~v~vwd~~~~~~~~~~~---------~~~~~~v~~~~~~~~~----~~~~~s~~~dg~i~iwd~~~~~--------  179 (350)
                      +.|+.|++|++..........         ..+...+..++|....    ...+++++.|+++++||+....        
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            999999999975433222111         1233456777776543    4678888999999999975321        


Q ss_pred             -------eeEee----cCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecC------C-CCceeEecCCCCc
Q 018784          180 -------IVQTL----ETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP------C-NTESASLEPKLGN  241 (350)
Q Consensus       180 -------~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~------~-~~~~~~~~~~~~~  241 (350)
                             .....    .....+.+++|+|++.+++++.|+.|++||+.+.+++..+...      . ....+.+.| +++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~  244 (393)
T d1sq9a_         166 NWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGS  244 (393)
T ss_dssp             CCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-STT
T ss_pred             eeccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc-ccc
Confidence                   00111    1124578899999996666667999999999988877655432      1 233455665 689


Q ss_pred             EEEEecCCC---eEEEEEcccCeeEEee-------------cCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784          242 IFIAGGEDM---WVHVFDFHTGEQIGCN-------------KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       242 ~l~sg~~d~---~i~v~d~~~~~~~~~~-------------~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~  305 (350)
                      +|++|+.|+   .|++||+.+++.+..+             .+|...|++++|+|++++|+|||.|++|+|||+.+.+..
T Consensus       245 ~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~  324 (393)
T d1sq9a_         245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI  324 (393)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             eeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEE
Confidence            999999887   4999999998877665             489999999999999999999999999999999888776


Q ss_pred             cCCCCCCCcccc---cccccc---ccceeeeeeEEEcccchhH
Q 018784          306 ENHSGTGNAQTG---KLKAST---DEVTRKIEGFHINKEGKAE  342 (350)
Q Consensus       306 ~~~~~~~~~~~~---~~~~~~---~~~~~~i~~~~~~~~g~~~  342 (350)
                      ....+|.+.+..   .+....   ......+.+..+.+.|...
T Consensus       325 ~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (393)
T d1sq9a_         325 TTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS  367 (393)
T ss_dssp             EEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSB
T ss_pred             EEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCcee
Confidence            655555443321   011111   1123446667776666443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=3.1e-28  Score=210.51  Aligned_cols=229  Identities=15%  Similarity=0.244  Sum_probs=176.3

Q ss_pred             CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEE
Q 018784           51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFD  130 (350)
Q Consensus        51 ~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd  130 (350)
                      .+++++|+||.++|.+++|++    |+|||.||+|++||+.++.    ..|...|.+++++++. .+++++.|+++++|+
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~----~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~   73 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH----QDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNG   73 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE----CCCCSCEEEEECCSTT-CCEEEETTTEEEETT
T ss_pred             cceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC----CCCCCCEEEEEecCCC-eEEEEeecccccccc
Confidence            468889999999999999987    8999999999999987542    3688899999998765 578999999999998


Q ss_pred             CCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEE-EEc-CC
Q 018784          131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT-TAD-GS  208 (350)
Q Consensus       131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-~~  208 (350)
                      +...        .....+..+.+. +++.+++++ .++.+.+|+..+++.+..+....++.  ++++++..++ ++. ++
T Consensus        74 ~~~~--------~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~  141 (287)
T d1pgua2          74 ITKH--------EFGSQPKVASAN-NDGFTAVLT-NDDDLLILQSFTGDIIKSVRLNSPGS--AVSLSQNYVAVGLEEGN  141 (287)
T ss_dssp             EEEE--------ECSSCEEEEEEC-SSSEEEEEE-TTSEEEEEETTTCCEEEEEECSSCEE--EEEECSSEEEEEETTTS
T ss_pred             cccc--------ccccceeeeeec-cCCceEEEe-ecccceeeeccceeeeeeccccceee--eeeccCcceeeeccccc
Confidence            7532        123345566654 455556555 45689999999999888888776654  4556665544 444 45


Q ss_pred             cEEEEECCCcceeeeeecCC--CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEE-eecCCCcCEEEEEEcCC----
Q 018784          209 SVKFWDANHFGLVKGYNMPC--NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG-CNKGHHGPVHCVRFSPG----  281 (350)
Q Consensus       209 ~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~-~~~~h~~~v~~l~~sp~----  281 (350)
                      .+++|++...........+.  ....+.+.+ ++.+|++|+.|+.|++||+.++.... .+.+|..+|.+++|+|.    
T Consensus       142 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  220 (287)
T d1pgua2         142 TIQVFKLSDLEVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGA  220 (287)
T ss_dssp             CEEEEETTEEEEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC---
T ss_pred             eeeeeeccccceeeeeeeccCCceeEEEecc-Cccccccccccccccceeecccccccccccccccccceeeeccccccc
Confidence            79999997765544433322  233455555 58999999999999999999988765 46789999999999875    


Q ss_pred             ------CCEEEEecCCCcEEEecCCC
Q 018784          282 ------GESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       282 ------~~~lasgs~Dg~v~vw~~~~  301 (350)
                            +.+|++||.|+.|++|++..
T Consensus       221 ~~~~~~~~~l~sgs~D~~i~iw~~~~  246 (287)
T d1pgua2         221 NEEEIEEDLVATGSLDTNIFIYSVKR  246 (287)
T ss_dssp             ---CCSCCEEEEEETTSCEEEEESSC
T ss_pred             ccccCCCCeeEeecCCCeEEEEECCC
Confidence                  46899999999999999865

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.2e-27  Score=200.43  Aligned_cols=236  Identities=19%  Similarity=0.356  Sum_probs=178.1

Q ss_pred             eeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEEC
Q 018784           53 WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDL  131 (350)
Q Consensus        53 ~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~  131 (350)
                      .+..+.+|...|+|++  +++++|||||.||+|+|||+.+++.+.++. |...|.+++|  ++++|++|+.|+.|++|++
T Consensus         7 ~i~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~   82 (293)
T d1p22a2           7 RIHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV   82 (293)
T ss_dssp             CEECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred             EEeccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccc
Confidence            4456778899999865  578999999999999999999999888875 8999999876  5789999999999999999


Q ss_pred             CCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEe---ec-CCCCeEEEEEecCCcEEEEEcC
Q 018784          132 NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQT---LE-TKSPVTSAEVSRDGRYITTADG  207 (350)
Q Consensus       132 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~---~~-~~~~v~~~~~~~~~~~l~~~~~  207 (350)
                      ......... .......  ..+.. ....++++..++.+++||..+......   +. +...+....+.++ ..++.+.|
T Consensus        83 ~~~~~~~~~-~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~d  157 (293)
T d1p22a2          83 NTGEMLNTL-IHHCEAV--LHLRF-NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-YIVSASGD  157 (293)
T ss_dssp             SSCCEEEEE-CCCCSCE--EEEEC-CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT-EEEEEETT
T ss_pred             ccccccccc-ccccccc--ccccc-cccceeecccccceeEeeccccccccccccccccccccccceeccc-ccccccCC
Confidence            765432222 2222222  22233 344677788899999999987653222   22 3445655555543 44566788


Q ss_pred             CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEE
Q 018784          208 SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYAS  287 (350)
Q Consensus       208 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~las  287 (350)
                      +.|++||+++.+.+..+..+...... +. ..+.++++++.|+.|++||+.+...+....+|...+..  +++++.+|++
T Consensus       158 ~~i~~~d~~~~~~~~~~~~~~~~v~~-~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~s  233 (293)
T d1p22a2         158 RTIKVWNTSTCEFVRTLNGHKRGIAC-LQ-YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVS  233 (293)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEE-EE-EETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEE
T ss_pred             CceeeecCCCCcEEEEEccccccccc-cc-CCCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEE
Confidence            99999999998888777654433222 22 23678999999999999999999999999999998875  5567889999


Q ss_pred             ecCCCcEEEecCCC
Q 018784          288 GSEDGTIRIWQTNP  301 (350)
Q Consensus       288 gs~Dg~v~vw~~~~  301 (350)
                      |+.||.|++||+..
T Consensus       234 g~~dg~i~iwd~~~  247 (293)
T d1p22a2         234 GAYDGKIKVWDLVA  247 (293)
T ss_dssp             EETTSCEEEEEHHH
T ss_pred             EcCCCEEEEEECCC
Confidence            99999999999753

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=1.9e-26  Score=211.13  Aligned_cols=305  Identities=11%  Similarity=0.112  Sum_probs=215.6

Q ss_pred             ccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeee--e----ecccc
Q 018784           31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS--F----EHKHI  104 (350)
Q Consensus        31 g~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~--~----~h~~~  104 (350)
                      .-++++++.|++|+|||+.+++.+.++..|. .+..++|+|||+++++++.|++|++||+.+++....  +    .|.+.
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~  110 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV  110 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred             eEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcce
Confidence            3467889999999999999999999999884 589999999999999999999999999998875433  2    35566


Q ss_pred             EeEEEEcCCCCeEEE-eeCCCeEEEEECCCCCCCCeee----------cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEE
Q 018784          105 VRACAFSEDTHLLLT-GGFEKILRIFDLNRPDAPPREV----------GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW  173 (350)
Q Consensus       105 V~~~~~~~~~~~l~s-g~~d~~v~vwd~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iw  173 (350)
                      +.+++|+|||+++++ +..++++++||...........          ..+.+....+..++++..++.+..+.+.+.++
T Consensus       111 ~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~  190 (426)
T d1hzua2         111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLV  190 (426)
T ss_dssp             EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred             EEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence            778888999998755 4589999999987654322111          12233445556666666666666666777777


Q ss_pred             ECCCCce--eEeecCCCCeEEEEEecCCcEEEEE--cCCcEEEEECCCcceeeeeecCCCC---ceeEecCC-CC-cEEE
Q 018784          174 DARSGKI--VQTLETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANHFGLVKGYNMPCNT---ESASLEPK-LG-NIFI  244 (350)
Q Consensus       174 d~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~-~~-~~l~  244 (350)
                      +......  +..+.....+..+.++|+++++..+  .+..+.+++..+...+.........   ....+... .+ -..+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (426)
T d1hzua2         191 NYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWST  270 (426)
T ss_dssp             ECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEE
T ss_pred             EeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEe
Confidence            7665542  3344556678899999999987655  3567999999988877666543221   12222221 12 2334


Q ss_pred             EecCCCeEEEEEccc-------CeeEEeecCCCcCEEEEEEcCCCCEEE-------EecCCCcEEEecCCCCCcccCCCC
Q 018784          245 AGGEDMWVHVFDFHT-------GEQIGCNKGHHGPVHCVRFSPGGESYA-------SGSEDGTIRIWQTNPPNHEENHSG  310 (350)
Q Consensus       245 sg~~d~~i~v~d~~~-------~~~~~~~~~h~~~v~~l~~sp~~~~la-------sgs~Dg~v~vw~~~~~~~~~~~~~  310 (350)
                      ..+.|+.+.+|+...       ++....+.+|...+..++|+|++++|+       +++.|++|+|||+...+......+
T Consensus       271 ~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~  350 (426)
T d1hzua2         271 SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP  350 (426)
T ss_dssp             ECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC
T ss_pred             ccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEec
Confidence            556788898888643       467788999999999999999999999       567789999999876654322111


Q ss_pred             CCCccccccccccccceeeeeeEEEcccchhH
Q 018784          311 TGNAQTGKLKASTDEVTRKIEGFHINKEGKAE  342 (350)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~  342 (350)
                      .     +. .....+...++..+.+||||+..
T Consensus       351 ~-----~~-~~~~~~~~~rv~~~~fSpDGk~i  376 (426)
T d1hzua2         351 I-----AE-WADLGEGAKRVVQPEYNKRGDEV  376 (426)
T ss_dssp             H-----HH-HHCCCSSCCCEEEEEECSSSSEE
T ss_pred             c-----ch-hcccCCCCccEEEEEECCCCCEE
Confidence            0     01 01123445556778889999843

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.96  E-value=4.9e-25  Score=190.67  Aligned_cols=268  Identities=11%  Similarity=0.076  Sum_probs=212.1

Q ss_pred             EEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEE-EEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcC
Q 018784           34 LVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE  112 (350)
Q Consensus        34 lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l-~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~  112 (350)
                      .++++.|++|.+||+++++.+.++... .....++|+|+|+++ ++++.++.|++||+.+++.+..+.....+..++|++
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~   83 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP   83 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECT
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccc
Confidence            467789999999999999999988754 456789999999876 678889999999999998888887666789999999


Q ss_pred             CCCeEE-EeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeE
Q 018784          113 DTHLLL-TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVT  191 (350)
Q Consensus       113 ~~~~l~-sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~  191 (350)
                      ++..++ ++..++.+.+|+..+..... . ..+......+.+.+++..+++++..++.+.+|+..+++.+..+.......
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (301)
T d1l0qa2          84 DGKQVYVTNMASSTLSVIDTTSNTVAG-T-VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPK  161 (301)
T ss_dssp             TSSEEEEEETTTTEEEEEETTTTEEEE-E-EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEE
T ss_pred             ccccccccccccceeeecccccceeee-e-ccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCce
Confidence            998665 55678899999987643322 2 23445677888888888888888889999999999999999888888889


Q ss_pred             EEEEecCCcEEEEE-c-CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEe--cCCCeEEEEEcccCeeEEeec
Q 018784          192 SAEVSRDGRYITTA-D-GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAG--GEDMWVHVFDFHTGEQIGCNK  267 (350)
Q Consensus       192 ~~~~~~~~~~l~~~-~-~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg--~~d~~i~v~d~~~~~~~~~~~  267 (350)
                      .+.++|++..+..+ . .+.+.+|+....................+.+....+++++  ..++.|++||+.+++.+..+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~  241 (301)
T d1l0qa2         162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP  241 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE
T ss_pred             EEEeeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEc
Confidence            99999998876554 3 4578888888777776666655555666666544444433  345789999999999887776


Q ss_pred             CCCcCEEEEEEcCCCCEE-EEecCCCcEEEecCCCCCcc
Q 018784          268 GHHGPVHCVRFSPGGESY-ASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       268 ~h~~~v~~l~~sp~~~~l-asgs~Dg~v~vw~~~~~~~~  305 (350)
                      .+ ..+++++|+|||++| ++++.|+.|++||+.+.+..
T Consensus       242 ~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         242 VG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT  279 (301)
T ss_dssp             CC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEE
Confidence            44 458999999999976 68889999999998766543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.95  E-value=2.3e-26  Score=210.97  Aligned_cols=191  Identities=14%  Similarity=0.103  Sum_probs=149.7

Q ss_pred             CccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee--ee----eccc
Q 018784           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH--SF----EHKH  103 (350)
Q Consensus        30 dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~--~~----~h~~  103 (350)
                      +.-++++.+.|++|.|||..+++++..+..| ..+..++|+|||+++++++.|++|++||+.+++...  .+    .|.+
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~  109 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS  109 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCC
Confidence            3345799999999999999999999999887 468999999999999999999999999998876432  22    3555


Q ss_pred             cEeEEEEcCCCCeE-EEeeCCCeEEEEECCCCCCCCeee----------cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEE
Q 018784          104 IVRACAFSEDTHLL-LTGGFEKILRIFDLNRPDAPPREV----------GNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (350)
Q Consensus       104 ~V~~~~~~~~~~~l-~sg~~d~~v~vwd~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i  172 (350)
                      .+.+.+|+|||++| ++++.+++|++||..+.+......          ....+....+.+++++..++++..++++|.+
T Consensus       110 ~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~  189 (432)
T d1qksa2         110 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL  189 (432)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEE
Confidence            66777888999976 678889999999998765332211          1234566778888888888889999999999


Q ss_pred             EECCCCce--eEeecCCCCeEEEEEecCCcEEEEEc--CCcEEEEECCCccee
Q 018784          173 WDARSGKI--VQTLETKSPVTSAEVSRDGRYITTAD--GSSVKFWDANHFGLV  221 (350)
Q Consensus       173 wd~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~vwd~~~~~~~  221 (350)
                      ||..+++.  +..+........+.++|+|++++++.  +..+.++|..+...+
T Consensus       190 ~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~  242 (432)
T d1qksa2         190 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV  242 (432)
T ss_dssp             EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             EEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEE
Confidence            99988764  34555666788999999999765543  567888887765443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.93  E-value=6.5e-25  Score=193.35  Aligned_cols=272  Identities=10%  Similarity=-0.013  Sum_probs=188.7

Q ss_pred             cCCCccEEEEEeCCCCeeEeeCCCCceeeecc-CccCCeEEEEECCCCcEE-EEeeCCCeEEEeeCCCCCeeeeeec---
Q 018784           27 ITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFEH---  101 (350)
Q Consensus        27 ~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~l-~s~s~Dg~v~vWd~~~~~~~~~~~h---  101 (350)
                      +++++++|++++.|++|.+||++++++++++. .|......++|+||++++ ++++.++.|++||+.+++....+..   
T Consensus         4 ~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~   83 (346)
T d1jmxb_           4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV   83 (346)
T ss_dssp             CCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred             CCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccc
Confidence            34599999999999999999999999999887 456677899999999876 6777899999999999887765532   


Q ss_pred             ----cccEeEEEEcCCCCeEEEee------------CCCeEEEEECCCCCCCCee-ecCCCCcEEEEEEeCCCCcEEEEE
Q 018784          102 ----KHIVRACAFSEDTHLLLTGG------------FEKILRIFDLNRPDAPPRE-VGNSSGSIRTVAWLHSDQTILSSC  164 (350)
Q Consensus       102 ----~~~V~~~~~~~~~~~l~sg~------------~d~~v~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~s~  164 (350)
                          ...+..++|+|+|+++++++            .+..+.+|+..+....... .......+..+.+ .+++.+++++
T Consensus        84 ~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  162 (346)
T d1jmxb_          84 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRA-ADDGSLYVAG  162 (346)
T ss_dssp             TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEE-CTTSCEEEES
T ss_pred             ccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEe-cCCCEEEEeC
Confidence                22466899999999998765            4677889987654322111 1111222333333 4556666543


Q ss_pred             eCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEE--------------------------E-EcCCcEEEEECCC
Q 018784          165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT--------------------------T-ADGSSVKFWDANH  217 (350)
Q Consensus       165 ~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--------------------------~-~~~~~i~vwd~~~  217 (350)
                         +.+.+||+.+++.+..+........+.++|++..+.                          + .....+.+||..+
T Consensus       163 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (346)
T d1jmxb_         163 ---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT  239 (346)
T ss_dssp             ---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTT
T ss_pred             ---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCC
Confidence               468999999999888876554444444444433211                          1 1234577788777


Q ss_pred             cceeeeeecCC--CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEE
Q 018784          218 FGLVKGYNMPC--NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIR  295 (350)
Q Consensus       218 ~~~~~~~~~~~--~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~  295 (350)
                      .........+.  ........+. +..++... ++.|++||+.+++.+..+. +...+++++|+|||++|++++.|+.|+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~  316 (346)
T d1jmxb_         240 GKTHTQEFADLTELYFTGLRSPK-DPNQIYGV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLA  316 (346)
T ss_dssp             CCEEEEEEEECSSCEEEEEECSS-CTTEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEE
T ss_pred             CceEEEEeecccceeEEEEEeCC-CCEEEEec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEE
Confidence            65443332222  2223344444 34444443 4579999999999887765 344689999999999999999999999


Q ss_pred             EecCCCCCcc
Q 018784          296 IWQTNPPNHE  305 (350)
Q Consensus       296 vw~~~~~~~~  305 (350)
                      +||..+.+..
T Consensus       317 v~D~~t~~~i  326 (346)
T d1jmxb_         317 VFNPDTLEKV  326 (346)
T ss_dssp             EEETTTTEEE
T ss_pred             EEECccCCEE
Confidence            9999776654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=3.2e-23  Score=189.41  Aligned_cols=288  Identities=11%  Similarity=0.031  Sum_probs=202.9

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceee-----eccCccCCeEEEEECCCCcEE-EEeeCCCeEE
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG-----TFEGHKGAVWSCCLDANALFS-ASGSADFTAK   86 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~-----~l~gH~~~V~~v~~~~~~~~l-~s~s~Dg~v~   86 (350)
                      .+| ..+..++|+|   ||++|++++.|+++++||+.+++...     ...+|.+.+.+++|+|||+++ +++..+++++
T Consensus        59 ~~g-~~~~~vafSP---DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~  134 (426)
T d1hzua2          59 DTG-YAVHISRMSA---SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFA  134 (426)
T ss_dssp             ECC-SSEEEEEECT---TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEE
T ss_pred             eCC-CCeeEEEECC---CCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEE
Confidence            455 4588999986   99999999999999999999887543     334687888888899999976 5666899999


Q ss_pred             EeeCCCCCeeeeee------------ccccEeEEEEcCCCCeEEEee-CCCeEEEEECCCCCCCCeeecCCCCcEEEEEE
Q 018784           87 LWDALTGDEKHSFE------------HKHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPPREVGNSSGSIRTVAW  153 (350)
Q Consensus        87 vWd~~~~~~~~~~~------------h~~~V~~~~~~~~~~~l~sg~-~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~  153 (350)
                      +||..++.....+.            +......+.+++++..++... ..+.+.+++.............+...+..+++
T Consensus       135 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (426)
T d1hzua2         135 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGW  214 (426)
T ss_dssp             EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEE
T ss_pred             EEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeE
Confidence            99999887665542            233456677777777666544 34666677665544333333456677889999


Q ss_pred             eCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC---CCeEEEEEecCC--cEEEEE--cCCcEEEEECCCc-------c
Q 018784          154 LHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK---SPVTSAEVSRDG--RYITTA--DGSSVKFWDANHF-------G  219 (350)
Q Consensus       154 ~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~--~~l~~~--~~~~i~vwd~~~~-------~  219 (350)
                      .+.++.++++...+..+.+++..+++.+......   .+.....+...+  ...+..  .++.+.+|+....       +
T Consensus       215 ~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~  294 (426)
T d1hzua2         215 DSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWK  294 (426)
T ss_dssp             CTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTS
T ss_pred             CCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccce
Confidence            9888888888888899999999999887776532   222233333322  222222  3667888876542       4


Q ss_pred             eeeeeecCCC-CceeEecCCCCcEEEE-------ecCCCeEEEEEcccCeeEEee---------cCCCcCEEEEEEcCCC
Q 018784          220 LVKGYNMPCN-TESASLEPKLGNIFIA-------GGEDMWVHVFDFHTGEQIGCN---------KGHHGPVHCVRFSPGG  282 (350)
Q Consensus       220 ~~~~~~~~~~-~~~~~~~~~~~~~l~s-------g~~d~~i~v~d~~~~~~~~~~---------~~h~~~v~~l~~sp~~  282 (350)
                      ....+..+.. ...+.+.| +++++++       ++.|++|+|||+.+++...++         ..|...|.+++|||||
T Consensus       295 ~~~~l~g~~~~v~~v~~sP-dg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDG  373 (426)
T d1hzua2         295 KVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG  373 (426)
T ss_dssp             EEEEEECSSSCCCCEECCT-TCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSS
T ss_pred             EeEEEecCCCceeEEEcCC-CCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCC
Confidence            4445554433 35566666 4777774       566889999999998765443         3456679999999999


Q ss_pred             CEE-EEe----cCCCcEEEecCCCCCcc
Q 018784          283 ESY-ASG----SEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       283 ~~l-asg----s~Dg~v~vw~~~~~~~~  305 (350)
                      +++ +|+    +.|+.|+|||..+.+..
T Consensus       374 k~i~vs~~~~~~~~~~i~v~D~~T~k~~  401 (426)
T d1hzua2         374 DEVWFSVWNGKNDSSALVVVDDKTLKLK  401 (426)
T ss_dssp             SEEEEEECCCTTSCCEEEEEETTTTEEE
T ss_pred             CEEEEEEecCCCCCCeEEEEECCCCeEE
Confidence            866 443    46889999998776543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=8.2e-24  Score=185.51  Aligned_cols=266  Identities=12%  Similarity=0.070  Sum_probs=185.9

Q ss_pred             cEEEEEeCCCCeeEeeCCCCceeeeccCc--cCCeEEEEECCCCcEE-EEeeCCCeEEEeeCCCCCeeeeeec------c
Q 018784           32 FFLVSASKDSSPMLRNGETGDWIGTFEGH--KGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFEH------K  102 (350)
Q Consensus        32 ~~lasgs~d~~v~iw~~~~~~~~~~l~gH--~~~V~~v~~~~~~~~l-~s~s~Dg~v~vWd~~~~~~~~~~~h------~  102 (350)
                      +|+++++.|++|+|||+++++.+.++..+  ...+..++++|||+++ ++++.|+.|.+||+.+++.+..+..      .
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            48999999999999999999999988643  4557789999999876 6778899999999999988776642      2


Q ss_pred             ccEeEEEEcCCCCeEEEee------------CCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784          103 HIVRACAFSEDTHLLLTGG------------FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV  170 (350)
Q Consensus       103 ~~V~~~~~~~~~~~l~sg~------------~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i  170 (350)
                      ..+..++|+|++++++++.            .+..+.+||.........  ......+..+++++++..+ ++++  +.+
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~l-~~~~--~~~  156 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA--FEAPRQITMLAWARDGSKL-YGLG--RDL  156 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE--EECCSSCCCEEECTTSSCE-EEES--SSE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEe--ccccCCceEEEEcCCCCEE-EEEc--CCc
Confidence            3456889999999998876            457788898875443221  2234456678887655544 4454  357


Q ss_pred             EEEECCCCceeEeecCCCCeEEEEEecCCc----------EE----EE-----------EcCCcEEEEECCCcceeeeee
Q 018784          171 RLWDARSGKIVQTLETKSPVTSAEVSRDGR----------YI----TT-----------ADGSSVKFWDANHFGLVKGYN  225 (350)
Q Consensus       171 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~----------~l----~~-----------~~~~~i~vwd~~~~~~~~~~~  225 (350)
                      .+||..+++....+..........+.+++.          ..    ..           ..+..+.+||..+........
T Consensus       157 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (337)
T d1pbyb_         157 HVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV  236 (337)
T ss_dssp             EEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred             ceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEe
Confidence            889999998877765432111111112111          00    01           112358888888766544322


Q ss_pred             cCCC--CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCC
Q 018784          226 MPCN--TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPN  303 (350)
Q Consensus       226 ~~~~--~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~  303 (350)
                      .+..  .....+.+ .+.+++.+  ++.|++||+.+++.+..+. +...+.+++|+|||++|++++.|+.|++||....+
T Consensus       237 ~~~~~~~~~~~~~~-~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~  312 (337)
T d1pbyb_         237 RIMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             EECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             cCCCcceEEEEecc-cceEEEEc--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence            2222  22233333 45555544  5889999999999887764 55678999999999999999999999999998766


Q ss_pred             ccc
Q 018784          304 HEE  306 (350)
Q Consensus       304 ~~~  306 (350)
                      ...
T Consensus       313 ~v~  315 (337)
T d1pbyb_         313 KKG  315 (337)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.91  E-value=3.8e-22  Score=176.49  Aligned_cols=250  Identities=12%  Similarity=0.057  Sum_probs=182.9

Q ss_pred             eccCCceeEEEecccCCCccEEEEEeCCC--CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSASKDS--SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA   90 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~--~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~   90 (350)
                      -+|...|.+++|+|   ||++|++++.|.  .+++||.++++.. .+.+|...|.+++|+|+++++++++.|+.+++|+.
T Consensus        39 ~~~~~~v~~~~~sp---Dg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~  114 (360)
T d1k32a3          39 VPEPLRIRYVRRGG---DTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL  114 (360)
T ss_dssp             CSCCSCEEEEEECS---SSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             ccCCCCEEEEEECC---CCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccc
Confidence            37999999999987   999998877654  7899999888765 67789999999999999999999999999999999


Q ss_pred             CCCCeeeeee-ccccEeEEEEcCCCCeEEEe----------eCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCc
Q 018784           91 LTGDEKHSFE-HKHIVRACAFSEDTHLLLTG----------GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (350)
Q Consensus        91 ~~~~~~~~~~-h~~~V~~~~~~~~~~~l~sg----------~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (350)
                      .+++....+. |...+.+++|+|++++|+.+          ..++.+++||+.....  .....+...+..++|++ ++.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~--~~~~~~~~~~~~~~~sp-dg~  191 (360)
T d1k32a3         115 ETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI--FAATTENSHDYAPAFDA-DSK  191 (360)
T ss_dssp             TTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE--EECSCSSSBEEEEEECT-TSC
T ss_pred             cccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCce--eeecccccccccccccC-CCC
Confidence            9888776654 67788999999999999854          3456799999975432  23344566778888886 555


Q ss_pred             EEEEEeCCCeEEEEECCCCce-------eEeecC-------------------------------------CCCeEEEEE
Q 018784          160 ILSSCTDSGGVRLWDARSGKI-------VQTLET-------------------------------------KSPVTSAEV  195 (350)
Q Consensus       160 ~~~s~~~dg~i~iwd~~~~~~-------~~~~~~-------------------------------------~~~v~~~~~  195 (350)
                      .+++++.|+.+++||......       ...+..                                     ......+..
T Consensus       192 ~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (360)
T d1k32a3         192 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIP  271 (360)
T ss_dssp             EEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEE
T ss_pred             EEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeee
Confidence            677788899999999754321       111100                                     001122333


Q ss_pred             ecCCcEEEE--------------EcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCe
Q 018784          196 SRDGRYITT--------------ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE  261 (350)
Q Consensus       196 ~~~~~~l~~--------------~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~  261 (350)
                      .+++...+.              ..++.|++||+.+.+... +.  .....+.+.| ++++|++++.||.|++||+.+++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-~~--~~v~~~~~Sp-DG~~l~~~~~Dg~i~v~d~~~~~  347 (360)
T d1k32a3         272 LESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-VK--NNLTDLRLSA-DRKTVMVRKDDGKIYTFPLEKPE  347 (360)
T ss_dssp             CSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-EE--EEEEEEEECT-TSCEEEEEETTSCEEEEESSCTT
T ss_pred             cCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEE-ec--CCcCEEEECC-CCCEEEEEECCCeEEEEECCCCC
Confidence            333322221              135679999998765422 21  1234456665 68999999999999999999998


Q ss_pred             eEEeecCCCcCE
Q 018784          262 QIGCNKGHHGPV  273 (350)
Q Consensus       262 ~~~~~~~h~~~v  273 (350)
                      ...++..+..++
T Consensus       348 ~~~~~~~d~~~~  359 (360)
T d1k32a3         348 DERTVETDKRPL  359 (360)
T ss_dssp             SCEECCCCSSCE
T ss_pred             cceEEEeccccc
Confidence            888777666654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.91  E-value=4e-21  Score=165.70  Aligned_cols=245  Identities=14%  Similarity=0.120  Sum_probs=196.2

Q ss_pred             CceeEEEecccCCCccEE-EEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcE-EEEeeCCCeEEEeeCCCCC
Q 018784           17 RPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF-SASGSADFTAKLWDALTGD   94 (350)
Q Consensus        17 ~~v~~~~~~~~s~dg~~l-asgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~-l~s~s~Dg~v~vWd~~~~~   94 (350)
                      ..+..++|+|   ||++| ++++.+++|++||..+++.+..+..|.. +..+++++++.. ++++..++.+++|+..+++
T Consensus        32 ~~p~~va~sp---dG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (301)
T d1l0qa2          32 SNPMGAVISP---DGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT  107 (301)
T ss_dssp             SSEEEEEECT---TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             CCceEEEEeC---CCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccccccccccccccceeeecccccce
Confidence            3467888886   99876 6777899999999999999999988764 578899998874 5667788999999999998


Q ss_pred             eeeeeeccccEeEEEEcCCCCeEE-EeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEE
Q 018784           95 EKHSFEHKHIVRACAFSEDTHLLL-TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW  173 (350)
Q Consensus        95 ~~~~~~h~~~V~~~~~~~~~~~l~-sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iw  173 (350)
                      ....+.+...+.++.|+|++..++ ++..++.+.+|+..+.....  .......+..+++.+.+..+++++.+++.+.+|
T Consensus       108 ~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (301)
T d1l0qa2         108 VAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN--TVSVGRSPKGIAVTPDGTKVYVANFDSMSISVI  185 (301)
T ss_dssp             EEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE--EEECCSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceee--ecccCCCceEEEeeccccceeeecccccccccc
Confidence            888888888889999999998775 55678899999987654322  223345577888888777777777777889999


Q ss_pred             ECCCCceeEeecCCCCeEEEEEecCCcEEEEE--c--CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCC
Q 018784          174 DARSGKIVQTLETKSPVTSAEVSRDGRYITTA--D--GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED  249 (350)
Q Consensus       174 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~--~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d  249 (350)
                      +....+....+........+.+++++..+..+  +  ++.|++||+.+.+.+..+.....+..+.+.|+...++++++.|
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~  265 (301)
T d1l0qa2         186 DTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFC  265 (301)
T ss_dssp             ETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT
T ss_pred             cccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCC
Confidence            99888888888888888899999999876432  2  3579999999998888777666666777777533456788899


Q ss_pred             CeEEEEEcccCeeEEeec
Q 018784          250 MWVHVFDFHTGEQIGCNK  267 (350)
Q Consensus       250 ~~i~v~d~~~~~~~~~~~  267 (350)
                      +.|++||+.+++.+.++.
T Consensus       266 ~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         266 NTVSVIDTATNTITATMA  283 (301)
T ss_dssp             TEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEECCCCeEEEEEe
Confidence            999999999999887764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.90  E-value=7.2e-21  Score=169.79  Aligned_cols=284  Identities=12%  Similarity=0.033  Sum_probs=203.4

Q ss_pred             eccCCceeEEEecccCCCccEEEEE-----eCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEee-------
Q 018784           13 HGHSRPVVDLFYSPITPDGFFLVSA-----SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS-------   80 (350)
Q Consensus        13 ~gH~~~v~~~~~~~~s~dg~~lasg-----s~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s-------   80 (350)
                      .+|..++..++++|   ||+.++..     +.++.+.+||.++++.+.++.++...  .++|+|||++++.++       
T Consensus        17 ~~~~~p~~~~a~sp---dg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~   91 (373)
T d2madh_          17 GAADGPTNDEAPGA---DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIA   91 (373)
T ss_pred             ccCCCCccccccCC---CCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCccc
Confidence            57899999998876   99887654     23456899999999999999887655  689999999988764       


Q ss_pred             ---CCCeEEEeeCCCCCeeeeeecc-c-------cEeEEEEcCCCCeEEEee--CCCeEEEEECCCCCCCCeeecCCCCc
Q 018784           81 ---ADFTAKLWDALTGDEKHSFEHK-H-------IVRACAFSEDTHLLLTGG--FEKILRIFDLNRPDAPPREVGNSSGS  147 (350)
Q Consensus        81 ---~Dg~v~vWd~~~~~~~~~~~h~-~-------~V~~~~~~~~~~~l~sg~--~d~~v~vwd~~~~~~~~~~~~~~~~~  147 (350)
                         .++.|++||..+++....+... .       ....+.|+++++.++...  .++.+.+|+......     ..+...
T Consensus        92 ~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~  166 (373)
T d2madh_          92 KGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSD-----DQLLSS  166 (373)
T ss_pred             ccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeE-----EEEecc
Confidence               4688999999999877665422 1       135578899988776554  456788888764322     122334


Q ss_pred             EEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-------CCeEEEEEecCCcEEEEEcCCcEEEEECCCcce
Q 018784          148 IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-------SPVTSAEVSRDGRYITTADGSSVKFWDANHFGL  220 (350)
Q Consensus       148 v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~  220 (350)
                      ...+.+++.+...+++.+.|+++.+||...++........       .......+.+++.++..+.++.+.+|+..+...
T Consensus       167 ~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  246 (373)
T d2madh_         167 PTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA  246 (373)
T ss_pred             ceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeE
Confidence            5677788887888889999999999999888766554321       123445566777788888888899998876543


Q ss_pred             eeeeec-------------CCCCceeEe---------cCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEE
Q 018784          221 VKGYNM-------------PCNTESASL---------EPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRF  278 (350)
Q Consensus       221 ~~~~~~-------------~~~~~~~~~---------~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~  278 (350)
                      ......             +.......+         ....+..+++...++.+.+||..+++.+..+. +...+.+++|
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~  325 (373)
T d2madh_         247 TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISV  325 (373)
T ss_pred             EEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEE
Confidence            221111             011111111         12234456677778899999999999887664 5667899999


Q ss_pred             cCCCC--EEEEecCCCcEEEecCCCCCcccC
Q 018784          279 SPGGE--SYASGSEDGTIRIWQTNPPNHEEN  307 (350)
Q Consensus       279 sp~~~--~lasgs~Dg~v~vw~~~~~~~~~~  307 (350)
                      +|||+  ++++++.|+.|++||+.+.+....
T Consensus       326 spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~  356 (373)
T d2madh_         326 AQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             CCCCCEEEEEEeCCCCeEEEEECCCCCEEEE
Confidence            99998  457899999999999977665433

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=9.9e-20  Score=166.31  Aligned_cols=230  Identities=13%  Similarity=0.061  Sum_probs=162.5

Q ss_pred             CCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee-ec---CCCC
Q 018784           71 ANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE-VG---NSSG  146 (350)
Q Consensus        71 ~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~-~~---~~~~  146 (350)
                      .+..++++.+.||+|+|||..+++.+..+.....+..++|+|||+++++++.|+++++||+.+.+..... ..   .+.+
T Consensus        30 ~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~  109 (432)
T d1qksa2          30 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS  109 (432)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             CCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCC
Confidence            3445679999999999999999999999876667999999999999999999999999999865543221 11   2233


Q ss_pred             cEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC------------CCCeEEEEEecCCcEEEEE--cCCcEEE
Q 018784          147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET------------KSPVTSAEVSRDGRYITTA--DGSSVKF  212 (350)
Q Consensus       147 ~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~--~~~~i~v  212 (350)
                      .+.+..|+++++.++++++.+++|++||..+++++..+..            ......+.++|++..++.+  .++.|.+
T Consensus       110 ~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~  189 (432)
T d1qksa2         110 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL  189 (432)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEE
Confidence            3344445555566778999999999999999988776543            2345678889998765433  4678999


Q ss_pred             EECCCcceeeeee--cCCCCceeEecCCCCcEE-EEecCCCeEEEEEcccCeeEEee-----------------------
Q 018784          213 WDANHFGLVKGYN--MPCNTESASLEPKLGNIF-IAGGEDMWVHVFDFHTGEQIGCN-----------------------  266 (350)
Q Consensus       213 wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l-~sg~~d~~i~v~d~~~~~~~~~~-----------------------  266 (350)
                      ||..+....+...  .........+.|. ++++ +++..++.+.++|..+++.+..+                       
T Consensus       190 ~d~~~~~~~~~~~i~~g~~~~~~~~spd-g~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~  268 (432)
T d1qksa2         190 VDYTDLNNLKTTEISAERFLHDGGLDGS-HRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPV  268 (432)
T ss_dssp             EETTCSSEEEEEEEECCSSEEEEEECTT-SCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEE
T ss_pred             EEccCCCcceEEEEcccCccccceECCC-CCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCce
Confidence            9988766544333  2233445666664 5554 45555667888888765543211                       


Q ss_pred             ---------------------cCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784          267 ---------------------KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       267 ---------------------~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~  301 (350)
                                           ..|...|....++|++..+++++.+...++|....
T Consensus       269 ~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~  324 (432)
T d1qksa2         269 WATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDAT  324 (432)
T ss_dssp             EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECT
T ss_pred             ecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeeccc
Confidence                                 01223456667778877788888888888887543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=9.5e-20  Score=159.36  Aligned_cols=269  Identities=9%  Similarity=0.114  Sum_probs=179.3

Q ss_pred             EEEEEeCCCCeeEeeCCCCceeeec--cCccCCeEEEEECCCCcEE-EEeeCCCeEEEeeCCCCCeeee----eeccccE
Q 018784           33 FLVSASKDSSPMLRNGETGDWIGTF--EGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHS----FEHKHIV  105 (350)
Q Consensus        33 ~lasgs~d~~v~iw~~~~~~~~~~l--~gH~~~V~~v~~~~~~~~l-~s~s~Dg~v~vWd~~~~~~~~~----~~h~~~V  105 (350)
                      .+++++.|++|++|++.+...+..+  ..|.+.+..++|+|||++| ++++.|+.|++|++........    ..+...+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            4577889999999998654433333  3588899999999999987 5556689999999876543322    2344567


Q ss_pred             eEEEEcCCCCeEEEeeC-CCeEEEEECCCCCCCC-eeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEe
Q 018784          106 RACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPP-REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQT  183 (350)
Q Consensus       106 ~~~~~~~~~~~l~sg~~-d~~v~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~  183 (350)
                      ..++|+|+|++|++++. ++.+.+|+........ .....+...+.++.+++++..++.....+..|.+|+.........
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence            88999999999988875 7789999876433221 122344556677788877766676666777899999876543221


Q ss_pred             -------ecCCCCeEEEEEecCCcEEEEE--cCCcEEEEECCCcce----eeeeec-C------CCCceeEecCCCCcEE
Q 018784          184 -------LETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANHFGL----VKGYNM-P------CNTESASLEPKLGNIF  243 (350)
Q Consensus       184 -------~~~~~~v~~~~~~~~~~~l~~~--~~~~i~vwd~~~~~~----~~~~~~-~------~~~~~~~~~~~~~~~l  243 (350)
                             .........+.|++++.++...  ..+...+|+......    ...... +      .......+.+....++
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~  245 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY  245 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred             eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCcee
Confidence                   1123456789999998877554  345677777543221    111111 1      1112234555444567


Q ss_pred             EEecCCCeEEEEEcccCeeEEee---cCCCcCEEEEEEcCCCCEEEE-ecCCCcEEEecCCC
Q 018784          244 IAGGEDMWVHVFDFHTGEQIGCN---KGHHGPVHCVRFSPGGESYAS-GSEDGTIRIWQTNP  301 (350)
Q Consensus       244 ~sg~~d~~i~v~d~~~~~~~~~~---~~h~~~v~~l~~sp~~~~las-gs~Dg~v~vw~~~~  301 (350)
                      +++..++.+.+|++.........   ..+...+.+++|+|||++|++ ++.++.|++|+++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             EEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             eecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence            77788899999998765433222   234456788999999998665 45678999997643

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=1.9e-19  Score=157.30  Aligned_cols=252  Identities=17%  Similarity=0.126  Sum_probs=181.8

Q ss_pred             ceeEeeccCCceeEEEecccCCCccEE-EEEeCCCCeeEeeCCCCceeeeccCccC-----CeEEEEECCCCcEEEEee-
Q 018784            8 VPLVCHGHSRPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEGHKG-----AVWSCCLDANALFSASGS-   80 (350)
Q Consensus         8 ~~~~~~gH~~~v~~~~~~~~s~dg~~l-asgs~d~~v~iw~~~~~~~~~~l~gH~~-----~V~~v~~~~~~~~l~s~s-   80 (350)
                      ..+....+...+.+++|+|   ||++| ++++.|++|.+||..+++.+..+..+..     .+..++++|++.+++.++ 
T Consensus        25 ~~i~~~~~~~~~~~i~~sp---Dg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~  101 (337)
T d1pbyb_          25 KVITIADAGPTPMVPMVAP---GGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYES  101 (337)
T ss_dssp             EEEECTTCTTCCCCEEECT---TSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEE
T ss_pred             EEEECCCCCCCccEEEECC---CCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeec
Confidence            3343445566788998886   99877 6778899999999999999988876543     345788999999888775 


Q ss_pred             -----------CCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeec-------
Q 018784           81 -----------ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-------  142 (350)
Q Consensus        81 -----------~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~-------  142 (350)
                                 .+..+.+||..+++....+.+...+..++|+|+++++++++.+  +.+||+...........       
T Consensus       102 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~  179 (337)
T d1pbyb_         102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAET  179 (337)
T ss_dssp             EEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTT
T ss_pred             CCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccc
Confidence                       4678899999998888888888889999999999999998765  67788765321111000       


Q ss_pred             -------------CCCCcEEE--EEEeCCCCcEEEEEeCCCeEEEEECCCCceeEee--cCCCCeEEEEEecCCcEEEEE
Q 018784          143 -------------NSSGSIRT--VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL--ETKSPVTSAEVSRDGRYITTA  205 (350)
Q Consensus       143 -------------~~~~~v~~--~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~  205 (350)
                                   ........  ...... .........++.+.+||..+++.....  ........+.+++++.++.+.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (337)
T d1pbyb_         180 YAQPDVLAVWNQHESSGVMATPFYTARKD-IDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA  258 (337)
T ss_dssp             BCCCBCCCCCCCCTTTTEEEEEEEEEBTT-SCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             eecCCcceeeccccccceeeeeeeeeeec-cceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc
Confidence                         00000100  011111 111112234457999999988755432  234566778889999888665


Q ss_pred             cCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec
Q 018784          206 DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK  267 (350)
Q Consensus       206 ~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~  267 (350)
                       ++.|++||+.+.+.+...........+.+.+ ++++|++++.|+.|++||..+++.+..+.
T Consensus       259 -~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         259 -YNVLESFDLEKNASIKRVPLPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             -ESEEEEEETTTTEEEEEEECSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             -cccEEEEECCCCcEEEEEcCCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence             4789999999999998888776666777776 58889999999999999999999887765

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=2.5e-18  Score=151.76  Aligned_cols=270  Identities=12%  Similarity=0.082  Sum_probs=168.0

Q ss_pred             CCCccEEEEE-----eCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEe----------eCCCeEEEeeCCC
Q 018784           28 TPDGFFLVSA-----SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASG----------SADFTAKLWDALT   92 (350)
Q Consensus        28 s~dg~~lasg-----s~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~----------s~Dg~v~vWd~~~   92 (350)
                      +|||+.++..     +.+.++.+||..+++.+.++..+...  .++|+||+++++.+          +.|+.|++||..+
T Consensus        10 spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t   87 (355)
T d2bbkh_          10 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT   87 (355)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC
Confidence            3699888664     34667999999999999998876555  68999999977653          4589999999999


Q ss_pred             CCeeeeee--------ccccEeEEEEcCCCCeEEEee--CCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEE
Q 018784           93 GDEKHSFE--------HKHIVRACAFSEDTHLLLTGG--FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS  162 (350)
Q Consensus        93 ~~~~~~~~--------h~~~V~~~~~~~~~~~l~sg~--~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  162 (350)
                      ++.+..+.        .......++|+|++++++.+.  .+..+.+|+..+....... .... ....  + +......+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~--~-~~~~~~~~  162 (355)
T d2bbkh_          88 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML-DVPD-CYHI--F-PTAPDTFF  162 (355)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE-ECCS-EEEE--E-EEETTEEE
T ss_pred             CCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEE-ecCC-cceE--e-ecCCcceE
Confidence            98766543        112345689999999887664  5678999998765432211 1111 1111  1 11112222


Q ss_pred             EEeCCCeEEEEECCCCceeEeec-------CCCCeEEEEEecCCc-EEEEEcCCcEEEEECCCccee--eeeecC-----
Q 018784          163 SCTDSGGVRLWDARSGKIVQTLE-------TKSPVTSAEVSRDGR-YITTADGSSVKFWDANHFGLV--KGYNMP-----  227 (350)
Q Consensus       163 s~~~dg~i~iwd~~~~~~~~~~~-------~~~~v~~~~~~~~~~-~l~~~~~~~i~vwd~~~~~~~--~~~~~~-----  227 (350)
                      ..+.|++..++..........+.       ....+....+.+++. ++.++.++.+.+|+.......  .....+     
T Consensus       163 ~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  242 (355)
T d2bbkh_         163 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAER  242 (355)
T ss_dssp             EEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHH
T ss_pred             EEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceE
Confidence            33344554444433322111111       112233445565554 455567889999998775432  111111     


Q ss_pred             ------CCCceeEecCCCCcEEEEecC----------CCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCC--EEEEec
Q 018784          228 ------CNTESASLEPKLGNIFIAGGE----------DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGE--SYASGS  289 (350)
Q Consensus       228 ------~~~~~~~~~~~~~~~l~sg~~----------d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~--~lasgs  289 (350)
                            .......+.+. +..++....          ...|.+||..+++.+..+. +...+.+++|+|||+  ++++++
T Consensus       243 ~~~~~p~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~  320 (355)
T d2bbkh_         243 ADGWRPGGWQQVAYHRA-LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALST  320 (355)
T ss_dssp             HTTEEECSSSCEEEETT-TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEET
T ss_pred             eeeeeccceEEEEEeCC-CCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEEC
Confidence                  11122334433 443333222          2479999999998887765 334588999999997  467888


Q ss_pred             CCCcEEEecCCCCCccc
Q 018784          290 EDGTIRIWQTNPPNHEE  306 (350)
Q Consensus       290 ~Dg~v~vw~~~~~~~~~  306 (350)
                      .|+.|++||+.+.+...
T Consensus       321 ~d~~i~v~D~~tg~~~~  337 (355)
T d2bbkh_         321 GDKTLYIHDAESGEELR  337 (355)
T ss_dssp             TTTEEEEEETTTCCEEE
T ss_pred             CCCEEEEEECCCCCEEE
Confidence            99999999998776554

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.75  E-value=1.7e-16  Score=138.71  Aligned_cols=250  Identities=12%  Similarity=0.016  Sum_probs=170.1

Q ss_pred             ccCCceeEEEecccCCCccEE-EEEeCCCCeeEeeCCCCceeeeccCcc------CCeEEEEECCCCcEEEEee------
Q 018784           14 GHSRPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEGHK------GAVWSCCLDANALFSASGS------   80 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~l-asgs~d~~v~iw~~~~~~~~~~l~gH~------~~V~~v~~~~~~~~l~s~s------   80 (350)
                      .|...+.+++|+|   ||+++ ++++.++.|.+||..+++.+..+....      ..+..+++++||++++.++      
T Consensus        37 ~~~~~p~~l~~sp---DG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~  113 (346)
T d1jmxb_          37 PDKFGPGTAMMAP---DNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL  113 (346)
T ss_dssp             SSCCSSCEEEECT---TSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEEC
T ss_pred             CCCCCcceEEECC---CCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcce
Confidence            3455678998886   99876 667789999999999999887664322      2355789999999887665      


Q ss_pred             ------CCCeEEEeeCCCCCeeeee---eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeec---------
Q 018784           81 ------ADFTAKLWDALTGDEKHSF---EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG---------  142 (350)
Q Consensus        81 ------~Dg~v~vWd~~~~~~~~~~---~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~---------  142 (350)
                            .++.+.+|+..+++....+   .....+..+.+++++..++++   ..+.+|++.++........         
T Consensus       114 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (346)
T d1jmxb_         114 NDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYS  190 (346)
T ss_dssp             SSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBC
T ss_pred             eeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEecCCCccceEE
Confidence                  4778899988776644332   234456667778888766553   3478888765432111100         


Q ss_pred             -----------CCCCcEEE---EEEeCCCCcEEEEEeCCCeEEEEECCCCceeEee--cCCCCeEEEEEecCCcEEEEEc
Q 018784          143 -----------NSSGSIRT---VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL--ETKSPVTSAEVSRDGRYITTAD  206 (350)
Q Consensus       143 -----------~~~~~v~~---~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~  206 (350)
                                 .....+..   ..........+.++..+..+.+||+.++......  .....+..+.+++++.+++...
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (346)
T d1jmxb_         191 APDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV  270 (346)
T ss_dssp             CCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE
T ss_pred             eccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec
Confidence                       00011111   1111223333444555678999999888755443  2455677888888887777766


Q ss_pred             CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCC
Q 018784          207 GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHH  270 (350)
Q Consensus       207 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~  270 (350)
                      .+.|++||..+++.++.+........+.+.+ +++++++++.|+.|++||..+++.+.++..+.
T Consensus       271 ~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~-DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~  333 (346)
T d1jmxb_         271 LNRLAKYDLKQRKLIKAANLDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG  333 (346)
T ss_dssp             ESEEEEEETTTTEEEEEEECSSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEEEECSS
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECccCCEEEEEECCC
Confidence            7789999999999888887766667777776 58888999999999999999999988776433

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.72  E-value=1.1e-14  Score=129.08  Aligned_cols=254  Identities=11%  Similarity=-0.048  Sum_probs=172.2

Q ss_pred             EEEecccCCCccEEEEEe----------CCCCeeEeeCCCCceeeeccCccCCeE-------EEEECCCCcEEEE--eeC
Q 018784           21 DLFYSPITPDGFFLVSAS----------KDSSPMLRNGETGDWIGTFEGHKGAVW-------SCCLDANALFSAS--GSA   81 (350)
Q Consensus        21 ~~~~~~~s~dg~~lasgs----------~d~~v~iw~~~~~~~~~~l~gH~~~V~-------~v~~~~~~~~l~s--~s~   81 (350)
                      .+.|+|   ||++|++++          .++.+++||..+++++..+..|.....       .+.|+++++.++.  ...
T Consensus        70 ~~a~Sp---DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~  146 (373)
T d2madh_          70 NPVAAH---SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA  146 (373)
T ss_pred             cEEEcC---CCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcC
Confidence            577775   999998875          467899999999999988877766553       3567777765443  345


Q ss_pred             CCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeE-EEeeCCCeEEEEECCCCCCCCeeecC---CCCcEEEEEEeCCC
Q 018784           82 DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLL-LTGGFEKILRIFDLNRPDAPPREVGN---SSGSIRTVAWLHSD  157 (350)
Q Consensus        82 Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l-~sg~~d~~v~vwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~  157 (350)
                      ++.+.+|+..+.+..   .+...+.++.++|+++.+ ++.+.|+.+.+|+.............   ..............
T Consensus       147 ~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (373)
T d2madh_         147 GPAVGLVVQGGSSDD---QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK  223 (373)
T ss_pred             CCceEEeeccCCeEE---EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC
Confidence            577888887665433   334456788999998755 67889999999998765433222111   11111122222223


Q ss_pred             CcEEEEEeCCCeEEEEECCCCceeEeec--C-----------CCCeEEEEEecCCcEEE-----------EEcCCcEEEE
Q 018784          158 QTILSSCTDSGGVRLWDARSGKIVQTLE--T-----------KSPVTSAEVSRDGRYIT-----------TADGSSVKFW  213 (350)
Q Consensus       158 ~~~~~s~~~dg~i~iwd~~~~~~~~~~~--~-----------~~~v~~~~~~~~~~~l~-----------~~~~~~i~vw  213 (350)
                      ...++..+.++++.+|+..++.......  .           ......+.+++++..+.           ...++.+.+|
T Consensus       224 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~  303 (373)
T d2madh_         224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV  303 (373)
T ss_pred             CceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEE
Confidence            3344555678899999988765332211  1           12233455666665433           2345679999


Q ss_pred             ECCCcceeeeeecCCCCceeEecCCCCc--EEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCC
Q 018784          214 DANHFGLVKGYNMPCNTESASLEPKLGN--IFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPG  281 (350)
Q Consensus       214 d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~  281 (350)
                      |..+++.+..+........+.+.++ ++  ++++++.|+.|++||+.+++.+..+.++......|++.++
T Consensus       304 d~~t~~~~~~~~~~~~~~~~a~spD-G~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         304 TGLVGQTSSQISLGHDVDAISVAQD-GGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             ECCCCcEEEEecCCCCeeEEEECCC-CCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            9999998888776666666777764 54  4578999999999999999999999988888888887653

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=2.1e-16  Score=140.67  Aligned_cols=280  Identities=10%  Similarity=-0.026  Sum_probs=176.9

Q ss_pred             ccCCceeEEEecccCCCccE---EEEEeCCCC--eeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEe---------
Q 018784           14 GHSRPVVDLFYSPITPDGFF---LVSASKDSS--PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASG---------   79 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~---lasgs~d~~--v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~---------   79 (350)
                      .+.++...+++.+   +++.   .++...+++  +.+||..+++.+.++.+|...  .++++||+++++..         
T Consensus        17 ~~~g~~~~~a~~~---~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~   91 (368)
T d1mdah_          17 ASDGSSCDHGPGA---ISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAK   91 (368)
T ss_dssp             CCCCCCBCCCCCC---CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred             ccCCCccccccCC---CCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccc
Confidence            3455566565544   6653   344566666  555699999999988887765  47899999987764         


Q ss_pred             -eCCCeEEEeeCCCCCeeeeee-c-------cccEeEEEEcCCCCeEEEee-CCCeEEEEECCCCCCCCeeecCCCCcEE
Q 018784           80 -SADFTAKLWDALTGDEKHSFE-H-------KHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPPREVGNSSGSIR  149 (350)
Q Consensus        80 -s~Dg~v~vWd~~~~~~~~~~~-h-------~~~V~~~~~~~~~~~l~sg~-~d~~v~vwd~~~~~~~~~~~~~~~~~v~  149 (350)
                       +.|++|++||..+++....+. +       ......++|+|||++|+.+. .++.+.+||+.+.+............  
T Consensus        92 g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~--  169 (368)
T d1mdah_          92 GKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH--  169 (368)
T ss_dssp             SSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC--
T ss_pred             cccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce--
Confidence             358899999999998776653 1       12235689999999998775 57999999998654322221111111  


Q ss_pred             EEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec-------CCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceee
Q 018784          150 TVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-------TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVK  222 (350)
Q Consensus       150 ~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~  222 (350)
                         ..+.+...++..+.||++.+|+...........       .........+.+++..+... ++.+.+++........
T Consensus       170 ---~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~v~~~~~~~~~~~~  245 (368)
T d1mdah_         170 ---IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV-ASSILQGDIPAAGATM  245 (368)
T ss_dssp             ---CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB-SSCCEEEECCSSCCEE
T ss_pred             ---EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec-CCCEEEEeecCCceEE
Confidence               122345566677788999999886654322221       11223345566666655433 3455566654433221


Q ss_pred             eeec-------------CCCCceeEecCCCCcEEEEecC--------CCeEEEEEcccCeeEEeecCCCcCEEEEEEcCC
Q 018784          223 GYNM-------------PCNTESASLEPKLGNIFIAGGE--------DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPG  281 (350)
Q Consensus       223 ~~~~-------------~~~~~~~~~~~~~~~~l~sg~~--------d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~  281 (350)
                      ....             +.......+.+..+.+++....        ...|.+||..+++.+..+. +...+.+++|+||
T Consensus       246 ~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spD  324 (368)
T d1mdah_         246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQD  324 (368)
T ss_dssp             ECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCS
T ss_pred             EeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCC
Confidence            1111             1112234445544444444322        2358899999998887765 3456889999999


Q ss_pred             CC--EEEEecCCCcEEEecCCCCCcc
Q 018784          282 GE--SYASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       282 ~~--~lasgs~Dg~v~vw~~~~~~~~  305 (350)
                      |+  ++++++.|+.|++||....+..
T Consensus       325 G~~~ly~s~~~~~~v~v~D~~tgk~~  350 (368)
T d1mdah_         325 GASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             SSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             CCEEEEEEeCCCCeEEEEECCCCCEE
Confidence            86  3578889999999998766544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=2.1e-14  Score=124.77  Aligned_cols=245  Identities=16%  Similarity=0.171  Sum_probs=164.4

Q ss_pred             ccCCceeEEEecccCCCccEEE-EEeCCCCeeEeeCCCCceeeeccC---ccCCeEEEEECCCCcEEEEeeC-CCeEEEe
Q 018784           14 GHSRPVVDLFYSPITPDGFFLV-SASKDSSPMLRNGETGDWIGTFEG---HKGAVWSCCLDANALFSASGSA-DFTAKLW   88 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~la-sgs~d~~v~iw~~~~~~~~~~l~g---H~~~V~~v~~~~~~~~l~s~s~-Dg~v~vW   88 (350)
                      .|.+.+..++|+|   ||++|+ +++.|+.|++|++.......++.+   +...+..++++|||+++++++. +++|++|
T Consensus        34 ~~~~~v~~la~sp---DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~  110 (333)
T d1ri6a_          34 DVPGQVQPMVVSP---DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVT  110 (333)
T ss_dssp             ECSSCCCCEEECT---TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             cCCCCEeEEEEeC---CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeee
Confidence            6888999999987   999884 555689999999876554333332   3455678999999998888774 7799999


Q ss_pred             eCCCCCeeee---eeccccEeEEEEcCCCCeEEEee-CCCeEEEEECCCCCCCCe-----eecCCCCcEEEEEEeCCCCc
Q 018784           89 DALTGDEKHS---FEHKHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPPR-----EVGNSSGSIRTVAWLHSDQT  159 (350)
Q Consensus        89 d~~~~~~~~~---~~h~~~V~~~~~~~~~~~l~sg~-~d~~v~vwd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~  159 (350)
                      +.........   ..+...+.++.++|+++++++++ .+..+.+|+.........     ...........++|.+.+..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~  190 (333)
T d1ri6a_         111 RLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY  190 (333)
T ss_dssp             EEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE
T ss_pred             ccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEecccee
Confidence            8766554333   24566788999999999888776 456799999765432211     11223445678888877777


Q ss_pred             EEEEEeCCCeEEEEECCCCc----eeEeec-------CCCCeEEEEEecCCcEEEEE--cCCcEEEEECCCcceeee---
Q 018784          160 ILSSCTDSGGVRLWDARSGK----IVQTLE-------TKSPVTSAEVSRDGRYITTA--DGSSVKFWDANHFGLVKG---  223 (350)
Q Consensus       160 ~~~s~~~dg~i~iwd~~~~~----~~~~~~-------~~~~v~~~~~~~~~~~l~~~--~~~~i~vwd~~~~~~~~~---  223 (350)
                      .+.+....+...+|+.....    ....+.       .......+.++++++++...  ..+.+.+|++........   
T Consensus       191 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (333)
T d1ri6a_         191 AYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEG  270 (333)
T ss_dssp             EEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEE
T ss_pred             EEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEE
Confidence            77777777888888865432    111211       12345678899999876554  356899998765432221   


Q ss_pred             -eecCCCCceeEecCCCCcEE-EEecCCCeEEEEEc--ccCee
Q 018784          224 -YNMPCNTESASLEPKLGNIF-IAGGEDMWVHVFDF--HTGEQ  262 (350)
Q Consensus       224 -~~~~~~~~~~~~~~~~~~~l-~sg~~d~~i~v~d~--~~~~~  262 (350)
                       ......+..+.+.|+ +++| +++..++.|.+|++  .+|.+
T Consensus       271 ~~~~~~~p~~~a~spD-Gk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         271 FQPTETQPRGFNVDHS-GKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             EEECSSSCCCEEECTT-SSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             EeCCCCCeeEEEEeCC-CCEEEEEECCCCeEEEEEEECCCCcE
Confidence             112233445677764 6654 55566789999955  45654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.68  E-value=1.2e-14  Score=127.76  Aligned_cols=251  Identities=14%  Similarity=0.040  Sum_probs=167.2

Q ss_pred             EEEecccCCCccEEEEE----------eCCCCeeEeeCCCCceeeeccCccCC-------eEEEEECCCCcEEEEe--eC
Q 018784           21 DLFYSPITPDGFFLVSA----------SKDSSPMLRNGETGDWIGTFEGHKGA-------VWSCCLDANALFSASG--SA   81 (350)
Q Consensus        21 ~~~~~~~s~dg~~lasg----------s~d~~v~iw~~~~~~~~~~l~gH~~~-------V~~v~~~~~~~~l~s~--s~   81 (350)
                      .++|+|   ||++|+.+          +.|+.|++||..+++.+..+..+...       ...++|++++.+++.+  +.
T Consensus        51 ~~a~Sp---Dg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~  127 (355)
T d2bbkh_          51 NPVVAD---DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP  127 (355)
T ss_dssp             EEEECT---TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS
T ss_pred             ceEEcC---CCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCC
Confidence            567775   99988764          35789999999999998877544322       2457899999876654  56


Q ss_pred             CCeEEEeeCCCCCeeeeeeccc--------cEeEEEEcCCCCeEEEe-eCCCeEEEEECCCCCCCCeeecCCCCcEEEEE
Q 018784           82 DFTAKLWDALTGDEKHSFEHKH--------IVRACAFSEDTHLLLTG-GFEKILRIFDLNRPDAPPREVGNSSGSIRTVA  152 (350)
Q Consensus        82 Dg~v~vWd~~~~~~~~~~~h~~--------~V~~~~~~~~~~~l~sg-~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~  152 (350)
                      +..+.+|+..+++....+....        ....+.++++++.++.. ..++.+.+++.......      +...+....
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  201 (355)
T d2bbkh_         128 APAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPE------DEFLINHPA  201 (355)
T ss_dssp             SCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCT------TSCBCSCCE
T ss_pred             CceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccce------ecceeeecc
Confidence            7889999999887766654322        22345677777666543 34455566655432221      122233345


Q ss_pred             EeCCCCcEEEEEeCCCeEEEEECCCCceeEe--ecC-----------CCCeEEEEEecCCcEEEEE--c---------CC
Q 018784          153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQT--LET-----------KSPVTSAEVSRDGRYITTA--D---------GS  208 (350)
Q Consensus       153 ~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~--~~~-----------~~~v~~~~~~~~~~~l~~~--~---------~~  208 (350)
                      +..++. .++.++.++.+++|++..++....  ...           ......+.+++++..+...  .         ..
T Consensus       202 ~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  280 (355)
T d2bbkh_         202 YSQKAG-RLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASR  280 (355)
T ss_dssp             EETTTT-EEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEE
T ss_pred             ccCCCC-eEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCC
Confidence            555444 455667889999999988754221  111           1223457888998876542  1         13


Q ss_pred             cEEEEECCCcceeeeeecCCCCceeEecCCCCc-EEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCC
Q 018784          209 SVKFWDANHFGLVKGYNMPCNTESASLEPKLGN-IFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPG  281 (350)
Q Consensus       209 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~  281 (350)
                      .|.+||..+.+.+..+........+.+.++... ++++++.|+.|++||+.+++.+.++.++......+.+.++
T Consensus       281 ~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         281 FVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             EEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred             eEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCC
Confidence            699999999988877765555556677775333 5677888999999999999999998877666666666554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.58  E-value=1.7e-15  Score=135.86  Aligned_cols=310  Identities=10%  Similarity=0.021  Sum_probs=189.9

Q ss_pred             CCCccE-EEEEeCCCCeeEeeCCCCceeeecc------------------------------CccCCeEEEEECCCCcEE
Q 018784           28 TPDGFF-LVSASKDSSPMLRNGETGDWIGTFE------------------------------GHKGAVWSCCLDANALFS   76 (350)
Q Consensus        28 s~dg~~-lasgs~d~~v~iw~~~~~~~~~~l~------------------------------gH~~~V~~v~~~~~~~~l   76 (350)
                      ..|..+ ++||+.+|+|++|++.+++.++.+.                              .|.........++||+++
T Consensus         7 ~~De~y~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~l   86 (441)
T d1qnia2           7 ELDEYYGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYL   86 (441)
T ss_dssp             CCCSEEEEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEE
T ss_pred             CCCCEEEEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEE
Confidence            334444 5788889999999988887666541                              133334444457899877


Q ss_pred             -EEeeCCCeEEEeeCCCCCeeeee--eccccEeEEEEcCCCCe--EEEeeCCC-----------------eEEEEECCCC
Q 018784           77 -ASGSADFTAKLWDALTGDEKHSF--EHKHIVRACAFSEDTHL--LLTGGFEK-----------------ILRIFDLNRP  134 (350)
Q Consensus        77 -~s~s~Dg~v~vWd~~~~~~~~~~--~h~~~V~~~~~~~~~~~--l~sg~~d~-----------------~v~vwd~~~~  134 (350)
                       ++...+.+|.++|+.+++....+  .+...+..++|+|+++.  ++..+.+.                 .+..+|..+.
T Consensus        87 fV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~  166 (441)
T d1qnia2          87 FINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM  166 (441)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTC
T ss_pred             EEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccc
Confidence             55678899999999999876654  45667999999999984  44444332                 2344666543


Q ss_pred             CCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEE
Q 018784          135 DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWD  214 (350)
Q Consensus       135 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd  214 (350)
                      .......  ..+....+++.++++..++++.....+..++..+.+....+........+.+.++|+++..+.++.+.+++
T Consensus       167 ~v~~qI~--v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~  244 (441)
T d1qnia2         167 DVAWQVI--VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDG  244 (441)
T ss_dssp             SEEEEEE--ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEEC
T ss_pred             eeeEEEe--cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEc
Confidence            3221111  12345677888777777777666555555554444333222211111223356889888777777888888


Q ss_pred             CCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeE--------EeecCCC---cCEEEEEEcCCCC
Q 018784          215 ANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI--------GCNKGHH---GPVHCVRFSPGGE  283 (350)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~--------~~~~~h~---~~v~~l~~sp~~~  283 (350)
                      ......++.+..+..+..+.+.|+...+++++..+++|.+||+.+.+..        .++.++.   -.....+|.++|.
T Consensus       245 ~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~  324 (441)
T d1qnia2         245 RGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN  324 (441)
T ss_dssp             SSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSE
T ss_pred             ccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCce
Confidence            7777777776666666777788754445678889999999998653321        1111111   1245678999999


Q ss_pred             EEEEecCCCcEEEecCCCCCcccCCCCCCCcccccccccc-ccceeeeeeEEEcccch
Q 018784          284 SYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKAST-DEVTRKIEGFHINKEGK  340 (350)
Q Consensus       284 ~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~g~  340 (350)
                      .+.|...|..|..|++......... ........++..++ -.|.-...|.+.+|||+
T Consensus       325 ~yts~~~ds~v~kw~~~~~~~~~~~-~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk  381 (441)
T d1qnia2         325 AYTTLFIDSQVCKWNIADAIKHYNG-DRVNYIRQKLDVQYQPGHNHASLTESRDADGK  381 (441)
T ss_dssp             EEEEETTTTEEEEEEHHHHHHHHTT-CCCCCEEEEEECSSCEEEEEETTTTSTTCCCC
T ss_pred             EEEcccccceEEEeccchhhhhhcc-CCCceeEeccccccCCCCCccccccccCCCCc
Confidence            9999999999999997422111110 01111222222222 23555556666667765

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.58  E-value=4.4e-13  Score=122.79  Aligned_cols=113  Identities=12%  Similarity=-0.049  Sum_probs=87.1

Q ss_pred             eeccCCceeEEEecccCCCccEEEEEeC---------CCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCC
Q 018784           12 CHGHSRPVVDLFYSPITPDGFFLVSASK---------DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD   82 (350)
Q Consensus        12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~---------d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D   82 (350)
                      +.+|...|.++.|||   ||++||.++.         ++.+.|||+++++. ..+..|.+.+..+.|+|||+.+|.. .+
T Consensus        57 ~~~~~~~i~~~~~Sp---Dg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~  131 (470)
T d2bgra1          57 FDEFGHSINDYSISP---DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WN  131 (470)
T ss_dssp             TTTSSSCCCEEEECT---TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ET
T ss_pred             hhhccCccceeEECC---CCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-ec
Confidence            356678899998886   9999998864         45678999998875 5788999999999999999998884 67


Q ss_pred             CeEEEeeCCCCCeeeeee-------------------ccccEeEEEEcCCCCeEEEeeCCCe-EEEE
Q 018784           83 FTAKLWDALTGDEKHSFE-------------------HKHIVRACAFSEDTHLLLTGGFEKI-LRIF  129 (350)
Q Consensus        83 g~v~vWd~~~~~~~~~~~-------------------h~~~V~~~~~~~~~~~l~sg~~d~~-v~vw  129 (350)
                      +.+.+|+..++.......                   ..+....+.|+|||+.|+....|.+ ++.|
T Consensus       132 ~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         132 NDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             TEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred             ccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceE
Confidence            899999988876544321                   1123456889999999998766533 4433

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.50  E-value=1.1e-11  Score=113.21  Aligned_cols=105  Identities=11%  Similarity=0.050  Sum_probs=85.4

Q ss_pred             CCCccEEEEEeCCCCeeEeeCCCCceee-----eccCccCCeEEEEECCCCcEEEEee---------CCCeEEEeeCCCC
Q 018784           28 TPDGFFLVSASKDSSPMLRNGETGDWIG-----TFEGHKGAVWSCCLDANALFSASGS---------ADFTAKLWDALTG   93 (350)
Q Consensus        28 s~dg~~lasgs~d~~v~iw~~~~~~~~~-----~l~gH~~~V~~v~~~~~~~~l~s~s---------~Dg~v~vWd~~~~   93 (350)
                      .+|+.++..  .|+.+.+||+.+++...     +|..|...|.++.|+||+++++.++         .++.+.+||+.++
T Consensus        25 ~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~  102 (470)
T d2bgra1          25 ISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR  102 (470)
T ss_dssp             CSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred             CCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC
Confidence            358888764  57889999999998765     4455668899999999999988774         3678899999988


Q ss_pred             CeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCC
Q 018784           94 DEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD  135 (350)
Q Consensus        94 ~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~  135 (350)
                      +......+...+..+.|+|||+.+|.. .++.+.+|++..+.
T Consensus       103 ~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~  143 (470)
T d2bgra1         103 QLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP  143 (470)
T ss_dssp             EECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC
T ss_pred             cccccccCCccccccccccCcceeeEe-ecccceEEECCCCc
Confidence            766555688889999999999999885 56789999987654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.50  E-value=4.4e-13  Score=118.74  Aligned_cols=241  Identities=8%  Similarity=-0.074  Sum_probs=148.1

Q ss_pred             EEEecccCCCccEEEEEe----------CCCCeeEeeCCCCceeeeccCccCC-------eEEEEECCCCcEEEEee-CC
Q 018784           21 DLFYSPITPDGFFLVSAS----------KDSSPMLRNGETGDWIGTFEGHKGA-------VWSCCLDANALFSASGS-AD   82 (350)
Q Consensus        21 ~~~~~~~s~dg~~lasgs----------~d~~v~iw~~~~~~~~~~l~gH~~~-------V~~v~~~~~~~~l~s~s-~D   82 (350)
                      .++|+|   ||++|+.++          .|++|++||..+++++..+..|...       -..++|++||++++.+. .+
T Consensus        69 ~~a~sp---Dg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~  145 (368)
T d1mdah_          69 LAVAGH---SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS  145 (368)
T ss_dssp             EEEECT---TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS
T ss_pred             cceECC---CCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCC
Confidence            466665   999888754          4788999999999998877654332       23578999999887665 67


Q ss_pred             CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee-----ecCCCCcEEEEEEeCCC
Q 018784           83 FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE-----VGNSSGSIRTVAWLHSD  157 (350)
Q Consensus        83 g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~-----~~~~~~~v~~~~~~~~~  157 (350)
                      +.+.+||+.+++....+.......  .+......+++.+.|+.+.+|++.........     ...+...+....+. .+
T Consensus       146 ~~v~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  222 (368)
T d1mdah_         146 SAAAGLSVPGASDDQLTKSASCFH--IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQAN-YP  222 (368)
T ss_dssp             SCEEEEEETTTEEEEEEECSSCCC--CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEET-TT
T ss_pred             CeEEEEECCCCcEeEEeeccCcce--EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccc-cC
Confidence            999999999988766654322111  01112334555666777777766543322211     11122222333333 33


Q ss_pred             CcEEEEEeCCCeEEEEECCCCceeEeecC-------------CCCeEEEEEecCCcEEEEE--cC--------CcEEEEE
Q 018784          158 QTILSSCTDSGGVRLWDARSGKIVQTLET-------------KSPVTSAEVSRDGRYITTA--DG--------SSVKFWD  214 (350)
Q Consensus       158 ~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~--~~--------~~i~vwd  214 (350)
                      +..+.+.  .+.+.+++...+........             ......+.+++++..+...  .+        ..|.+||
T Consensus       223 g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D  300 (368)
T d1mdah_         223 GMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT  300 (368)
T ss_dssp             TEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEE
T ss_pred             cEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEE
Confidence            4344332  34566666655443221111             1122347788887765432  11        3589999


Q ss_pred             CCCcceeeeeecCCCCceeEecCCCCc-EEEEecCCCeEEEEEcccCeeEEeecCC
Q 018784          215 ANHFGLVKGYNMPCNTESASLEPKLGN-IFIAGGEDMWVHVFDFHTGEQIGCNKGH  269 (350)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~d~~i~v~d~~~~~~~~~~~~h  269 (350)
                      ..+.+.+..+........+.+.++... +++++..|+.|++||..+++.+..+...
T Consensus       301 ~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         301 ASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             SSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             CCCCcEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC
Confidence            999988776665444455667765333 5678888999999999999998887643

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.48  E-value=5.4e-13  Score=119.39  Aligned_cols=268  Identities=10%  Similarity=-0.019  Sum_probs=169.6

Q ss_pred             cCCceeEEEecccCCCccEE-EEEeCCCCeeEeeCCCCceeeecc-CccCCeEEEEECCCCc--EEEEeeCCC-------
Q 018784           15 HSRPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANAL--FSASGSADF-------   83 (350)
Q Consensus        15 H~~~v~~~~~~~~s~dg~~l-asgs~d~~v~iw~~~~~~~~~~l~-gH~~~V~~v~~~~~~~--~l~s~s~Dg-------   83 (350)
                      |.......   ..+|||++| ++...+..|.++|+.+++....++ .+......++|+++++  +++..+.+.       
T Consensus        70 hhP~~s~t---~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg  146 (441)
T d1qnia2          70 HHPHISMT---DGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDG  146 (441)
T ss_dssp             CCCEEEEE---TTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSS
T ss_pred             cCCCccee---cccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcc
Confidence            44444444   345699988 455577889999999999887765 4667889999999988  444444332       


Q ss_pred             ----------eEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCC-eEEEEECCCCCCCCeeecCCCCcEEEEE
Q 018784           84 ----------TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK-ILRIFDLNRPDAPPREVGNSSGSIRTVA  152 (350)
Q Consensus        84 ----------~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~-~v~vwd~~~~~~~~~~~~~~~~~v~~~~  152 (350)
                                .+..+|..+.+....+.....+..++|+|+|+++++.+.+. .+..++..+.... ..... ......++
T Consensus       147 ~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~-d~i~v-~n~p~~~~  224 (441)
T d1qnia2         147 TDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDR-DWVVV-FNVERIAA  224 (441)
T ss_dssp             SCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSB-CEEEE-EEHHHHHH
T ss_pred             cccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceE-EEEEe-CCccceEE
Confidence                      23557777777776666566788999999999998877653 2222222111110 00000 00000011


Q ss_pred             EeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEc--CCcEEEEECCCccee--------e
Q 018784          153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD--GSSVKFWDANHFGLV--------K  222 (350)
Q Consensus       153 ~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~vwd~~~~~~~--------~  222 (350)
                      +.+ +++.+.. +.++.+.+++....+.+..+........+.++|||+++.++.  +++|.+||+.+....        .
T Consensus       225 ~~~-dGk~~~v-~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~  302 (441)
T d1qnia2         225 AVK-AGNFKTI-GDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRD  302 (441)
T ss_dssp             HHH-TTCCBCC-TTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGG
T ss_pred             Eec-CCCEEEe-CCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcce
Confidence            223 3333333 345788888877777777877666667899999999987664  689999998663321        0


Q ss_pred             eeecCCC----CceeEecCCCCcEEEEecCCCeEEEEEcccC------e----eEEee-----cCCCcCEEEEEEcCCCC
Q 018784          223 GYNMPCN----TESASLEPKLGNIFIAGGEDMWVHVFDFHTG------E----QIGCN-----KGHHGPVHCVRFSPGGE  283 (350)
Q Consensus       223 ~~~~~~~----~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~------~----~~~~~-----~~h~~~v~~l~~sp~~~  283 (350)
                      .......    ..-..|.+ .++.+.+...|..|..|++...      +    .+..+     .||...+.+..|+|||+
T Consensus       303 ~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk  381 (441)
T d1qnia2         303 TIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGK  381 (441)
T ss_dssp             GEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCC
T ss_pred             EEEeecccccCcccceecC-CceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCc
Confidence            1111100    11123444 4788899999999999997421      1    12222     47777777888999999


Q ss_pred             EEEEecC
Q 018784          284 SYASGSE  290 (350)
Q Consensus       284 ~lasgs~  290 (350)
                      +|++++.
T Consensus       382 ~l~s~~k  388 (441)
T d1qnia2         382 WLVVLSK  388 (441)
T ss_dssp             EEEEEES
T ss_pred             EEEecCc
Confidence            9999943

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.22  E-value=3.1e-08  Score=84.53  Aligned_cols=224  Identities=12%  Similarity=0.017  Sum_probs=146.6

Q ss_pred             CeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee-
Q 018784           63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV-  141 (350)
Q Consensus        63 ~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~-  141 (350)
                      .+..+++++||.++++...+++|..|+.. +...........+.+++|.++|+++++...++.+..|+........... 
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~  107 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL  107 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeecc
Confidence            36688999999999999999999999865 4444445667789999999999999988888888888765433222221 


Q ss_pred             -cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-----------CCCeEEEEEecCCcEEEEEcCCc
Q 018784          142 -GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-----------KSPVTSAEVSRDGRYITTADGSS  209 (350)
Q Consensus       142 -~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~~~  209 (350)
                       .........+++. +++.++++...++.+..+|...+.....+..           ......+.+..+..+++....+.
T Consensus       108 ~~~~~~~~n~i~~~-~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~  186 (302)
T d2p4oa1         108 TLPDAIFLNGITPL-SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKML  186 (302)
T ss_dssp             ECTTCSCEEEEEES-SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTE
T ss_pred             ccCCccccceeEEc-cCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCe
Confidence             1233456677765 4667788877888899999887653322211           12345566655444444445678


Q ss_pred             EEEEECCCcceeee---eecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCe-eEEeecCCCcCEEEEEE---cCCC
Q 018784          210 VKFWDANHFGLVKG---YNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE-QIGCNKGHHGPVHCVRF---SPGG  282 (350)
Q Consensus       210 i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~-~~~~~~~h~~~v~~l~~---sp~~  282 (350)
                      |..++.........   .........+.+.+ +++++++...++.|..++..... .+......-...++++|   ++|+
T Consensus       187 i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~-dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~  265 (302)
T d2p4oa1         187 LLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDC  265 (302)
T ss_dssp             EEEEEBCTTSCBCCCEEEEESCCCSSEEEBT-TCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTT
T ss_pred             EEeccccccccccccccccCCCCCcceEECC-CCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCC
Confidence            88888765432221   11123344555655 57888988889999999765332 22333334456899999   6777


Q ss_pred             CEEEEec
Q 018784          283 ESYASGS  289 (350)
Q Consensus       283 ~~lasgs  289 (350)
                      +.|+.++
T Consensus       266 ~~Lyvtt  272 (302)
T d2p4oa1         266 TAIYVVT  272 (302)
T ss_dssp             TEEEEEE
T ss_pred             CEEEEEC
Confidence            7665443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.10  E-value=1e-07  Score=79.31  Aligned_cols=237  Identities=10%  Similarity=-0.007  Sum_probs=142.1

Q ss_pred             cCCceeEEEecccCCCccEEEE-EeCCCCeeEeeCCC-CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC
Q 018784           15 HSRPVVDLFYSPITPDGFFLVS-ASKDSSPMLRNGET-GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT   92 (350)
Q Consensus        15 H~~~v~~~~~~~~s~dg~~las-gs~d~~v~iw~~~~-~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~   92 (350)
                      |.-...+|++++   +|.+.++ .+..+.+..++... +.....+.+.. .-..+++++++.++++....+.+++++..+
T Consensus        12 ~~~~P~~vavd~---dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~p~gvav~~~g~i~v~d~~~~~i~~~~~~~   87 (260)
T d1rwia_          12 FRLSPSGVAVDS---AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLY-QPQGLAVDGAGTVYVTDFNNRVVTLAAGSN   87 (260)
T ss_dssp             SCCCEEEEEECT---TCCEEEEECSSSCEEEEEC----CEEECCCCSCC-SCCCEEECTTCCEEEEETTTEEEEECTTCS
T ss_pred             CcCCCCEEEEcC---CCCEEEEEcCCCCEEEEEcCCCceEEEeccCCcc-CceEEEEcCCCCEEEeeeeeceeeeeeecc
Confidence            334557898886   8886554 45556666655433 33333334332 235678999999999888888888887666


Q ss_pred             CCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEE
Q 018784           93 GDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL  172 (350)
Q Consensus        93 ~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i  172 (350)
                      .........-..+..+++.++++++++-..+..+..++........ ...........+++.+ ++.++++...++.|..
T Consensus        88 ~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~i~~~~-~g~~~v~~~~~~~i~~  165 (260)
T d1rwia_          88 NQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-LPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVK  165 (260)
T ss_dssp             CCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE-CCCCSCCSCCEEEECT-TCCEEEEEGGGTEEEE
T ss_pred             ceeeeeeeeeeecccccccccceeEeeccccccccccccccceeee-eeecccCCcceeeecC-CCCEeeeccccccccc
Confidence            6555444444568899999999988877777777777765432211 1111223345677665 4557777777788999


Q ss_pred             EECCCCceeEee-cCCCCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCC
Q 018784          173 WDARSGKIVQTL-ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM  250 (350)
Q Consensus       173 wd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~  250 (350)
                      +|.......... ..-.....+++.++|+++++.. .+.|..++...                                 
T Consensus       166 ~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~---------------------------------  212 (260)
T d1rwia_         166 LEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS---------------------------------  212 (260)
T ss_dssp             ECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC---------------------------------
T ss_pred             cccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCC---------------------------------
Confidence            987654433222 2223456677777776665543 23344343221                                 


Q ss_pred             eEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784          251 WVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT  299 (350)
Q Consensus       251 ~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~  299 (350)
                               ..........-.....|++.++|.++++-..+++|+..+.
T Consensus       213 ---------~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         213 ---------TTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             ---------SCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             ---------CeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence                     1100000111234678999999988888777777776653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=1.5e-06  Score=72.01  Aligned_cols=236  Identities=16%  Similarity=0.127  Sum_probs=138.3

Q ss_pred             CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEe-eCCC--eEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEE
Q 018784           42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASG-SADF--TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL  118 (350)
Q Consensus        42 ~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~-s~Dg--~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~  118 (350)
                      .|.|.|.. |.-...+..+...+..-+|+|||+.||=. ...+  .+.+.+...+.......+........|+|++..++
T Consensus        20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeee
Confidence            35565544 33333444456778889999999988743 3333  35555666666666666777888999999999887


Q ss_pred             EeeC-CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe--EEEEECCCCceeEeecCCCCeEEEEE
Q 018784          119 TGGF-EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG--VRLWDARSGKIVQTLETKSPVTSAEV  195 (350)
Q Consensus       119 sg~~-d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~--i~iwd~~~~~~~~~~~~~~~v~~~~~  195 (350)
                      .... ++...++.......................++.....++.+...++.  |.+.++..+................+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  178 (269)
T d2hqsa1          99 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADV  178 (269)
T ss_dssp             EEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEE
T ss_pred             EeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeeccccccccccc
Confidence            6543 22323332221122222222233344455566666666666666654  55556666654444444556677889


Q ss_pred             ecCCcEEEEE--cCC--cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecC---CCeEEEEEcccCeeEEeecC
Q 018784          196 SRDGRYITTA--DGS--SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE---DMWVHVFDFHTGEQIGCNKG  268 (350)
Q Consensus       196 ~~~~~~l~~~--~~~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~---d~~i~v~d~~~~~~~~~~~~  268 (350)
                      +|+++.++..  .++  .+.+.|...... +............+.| +|+.|+..+.   ...|+++++..+.. ..+..
T Consensus       179 spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SP-DG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~  255 (269)
T d2hqsa1         179 SSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPA  255 (269)
T ss_dssp             CTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECT-TSSEEEEEEEETTEEEEEEEETTSCCE-EECCC
T ss_pred             ccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECC-CCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeC
Confidence            9999887654  233  355556554433 2222222233445666 5666654332   34688999876554 45555


Q ss_pred             CCcCEEEEEEcCC
Q 018784          269 HHGPVHCVRFSPG  281 (350)
Q Consensus       269 h~~~v~~l~~sp~  281 (350)
                      ..+.+...+|||-
T Consensus       256 ~~g~~~~p~WSP~  268 (269)
T d2hqsa1         256 TDGQVKFPAWSPY  268 (269)
T ss_dssp             SSSEEEEEEECCC
T ss_pred             CCCcEEeEEeCCC
Confidence            6667888899983

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.97  E-value=1.3e-06  Score=73.14  Aligned_cols=233  Identities=12%  Similarity=0.126  Sum_probs=144.7

Q ss_pred             CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCc------cCCeEEEEECCC-CcEEE-EeeCCCeEEEe
Q 018784           17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH------KGAVWSCCLDAN-ALFSA-SGSADFTAKLW   88 (350)
Q Consensus        17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH------~~~V~~v~~~~~-~~~l~-s~s~Dg~v~vW   88 (350)
                      .....|++++   +|+++++-...+.|++||.+ |++++.+...      ...-..+++..+ +..++ ..+.++.|.++
T Consensus        23 ~~P~gvavd~---dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~   98 (279)
T d1q7fa_          23 TEPSGVAVNA---QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY   98 (279)
T ss_dssp             SCEEEEEECT---TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CCccEEEEcC---CCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccc
Confidence            3467888876   89888887778889999854 7777666321      111234454333 44443 44556678888


Q ss_pred             eCCCCCeeeeee--ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee--ecCCCCcEEEEEEeCCCCcEEEEE
Q 018784           89 DALTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE--VGNSSGSIRTVAWLHSDQTILSSC  164 (350)
Q Consensus        89 d~~~~~~~~~~~--h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~s~  164 (350)
                      +. .+.....+.  .-.....+++.+++.++++......+.+++.... . ...  ...+......+++. +++.++++.
T Consensus        99 ~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~-~-~~~~g~~~~~~~~~~i~~d-~~g~i~v~d  174 (279)
T d1q7fa_          99 NQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-V-LHKFGCSKHLEFPNGVVVN-DKQEIFISD  174 (279)
T ss_dssp             CT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-E-EEEEECTTTCSSEEEEEEC-SSSEEEEEE
T ss_pred             cc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCc-e-eecccccccccccceeeec-cceeEEeee
Confidence            75 344444443  3455788999999998888888888888876532 1 111  12334556677665 455677777


Q ss_pred             eCCCeEEEEECCCCceeEeecCC---CCeEEEEEecCCcEEEEEc--CCcEEEEECCCcceeeeeecCCCCceeEecCCC
Q 018784          165 TDSGGVRLWDARSGKIVQTLETK---SPVTSAEVSRDGRYITTAD--GSSVKFWDANHFGLVKGYNMPCNTESASLEPKL  239 (350)
Q Consensus       165 ~~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~--~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  239 (350)
                      ...+.|++||. +++.+.++...   .....+++.++|+++++..  +..|.+|+.                        
T Consensus       175 ~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~------------------------  229 (279)
T d1q7fa_         175 NRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ------------------------  229 (279)
T ss_dssp             GGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT------------------------
T ss_pred             ccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC------------------------
Confidence            77789999985 45655555432   2355677777777665532  223555442                        


Q ss_pred             CcEEEEecCCCeEEEEEcccCeeEEeec--CCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCC
Q 018784          240 GNIFIAGGEDMWVHVFDFHTGEQIGCNK--GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPP  302 (350)
Q Consensus       240 ~~~l~sg~~d~~i~v~d~~~~~~~~~~~--~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~  302 (350)
                                         +|+.+.++.  ......+.|++.|+|.++++ +.+.+|++|++...
T Consensus       230 -------------------~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         230 -------------------DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  274 (279)
T ss_dssp             -------------------TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             -------------------CCCEEEEEeCCCCCCCEeEEEEeCCCcEEEE-eCCCeEEEEEeeee
Confidence                               122222211  12234688999999986665 57899999998654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.96  E-value=6.5e-07  Score=76.56  Aligned_cols=235  Identities=11%  Similarity=0.121  Sum_probs=142.7

Q ss_pred             eEEEEECCCCcEEEEeeC-------CCeEEEeeCCCCCeeeeee-----ccccEeEEEEcCCCCeEEEeeCCCeEEEEEC
Q 018784           64 VWSCCLDANALFSASGSA-------DFTAKLWDALTGDEKHSFE-----HKHIVRACAFSEDTHLLLTGGFEKILRIFDL  131 (350)
Q Consensus        64 V~~v~~~~~~~~l~s~s~-------Dg~v~vWd~~~~~~~~~~~-----h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~  131 (350)
                      ....+|+++|.+.++...       +|.|..||..++.......     .......++|.+++..++++...+.+..++.
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~   99 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT   99 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence            345678999988776432       4678899988776433321     1123678999999998888877778888887


Q ss_pred             CCCCCCCeeecCC---CCcEEEEEEeCCCCcEEEEEeC---------------CCeEEEEECCCCceeEeecCCCCeEEE
Q 018784          132 NRPDAPPREVGNS---SGSIRTVAWLHSDQTILSSCTD---------------SGGVRLWDARSGKIVQTLETKSPVTSA  193 (350)
Q Consensus       132 ~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~s~~~---------------dg~i~iwd~~~~~~~~~~~~~~~v~~~  193 (350)
                      .............   -.....+++.+ ++.+.++-..               +|.|..++. .++.......-...+.+
T Consensus       100 ~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~~~~~pNGi  177 (314)
T d1pjxa_         100 DGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTAFQFPNGI  177 (314)
T ss_dssp             TSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEEEESSEEEE
T ss_pred             CCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeCCcceeeee
Confidence            6432111110000   11245566654 4455554321               234444443 23333222222334678


Q ss_pred             EEecCCc-----EEEEE-cCCcEEEEECCCcceeeee----ecCC----CCceeEecCCCCcEEEEecCCCeEEEEEccc
Q 018784          194 EVSRDGR-----YITTA-DGSSVKFWDANHFGLVKGY----NMPC----NTESASLEPKLGNIFIAGGEDMWVHVFDFHT  259 (350)
Q Consensus       194 ~~~~~~~-----~l~~~-~~~~i~vwd~~~~~~~~~~----~~~~----~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~  259 (350)
                      +|++++.     ++++. ..+.|..||+.....+...    ..+.    .+..+.+.. +++++++....+.|.+||...
T Consensus       178 ~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~-~GnlyVa~~~~g~I~~~dp~~  256 (314)
T d1pjxa_         178 AVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPDG  256 (314)
T ss_dssp             EEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTTC
T ss_pred             EECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEec-CCcEEEEEcCCCEEEEEeCCC
Confidence            8888763     33333 3567888876543322211    1111    122344443 588888888889999999887


Q ss_pred             CeeEEeecCCCcCEEEEEEcCCCC-EEEEecCCCcEEEecCCC
Q 018784          260 GEQIGCNKGHHGPVHCVRFSPGGE-SYASGSEDGTIRIWQTNP  301 (350)
Q Consensus       260 ~~~~~~~~~h~~~v~~l~~sp~~~-~lasgs~Dg~v~vw~~~~  301 (350)
                      +..+..+......+.+++|.|+++ ++++.+..+.|...++..
T Consensus       257 g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         257 GQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             BSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            776666666667789999999986 667888889888887743

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=2.2e-06  Score=70.86  Aligned_cols=217  Identities=13%  Similarity=0.036  Sum_probs=122.7

Q ss_pred             eEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeC-CC--eEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcE
Q 018784           84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-EK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI  160 (350)
Q Consensus        84 ~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~-d~--~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  160 (350)
                      .|.|-|......+....+...+.+-+|||||+.||-... .+  .+.+.+....  .......+.+......|++.+..+
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG--AVRQVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC--CEEEEECCSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccC--ceeEEeeeecccccceecCCCCee
Confidence            456657665556666677888999999999999975433 22  3555555433  334455667778888899887777


Q ss_pred             EEEEeCCCeEEEEE--CCCCceeEeecCCCCeEEEEEecCCcEEEE--EcCC--cEEEEECCCcceeeeeecCCCCceeE
Q 018784          161 LSSCTDSGGVRLWD--ARSGKIVQTLETKSPVTSAEVSRDGRYITT--ADGS--SVKFWDANHFGLVKGYNMPCNTESAS  234 (350)
Q Consensus       161 ~~s~~~dg~i~iwd--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~~--~i~vwd~~~~~~~~~~~~~~~~~~~~  234 (350)
                      +.....++...++.  ....................+++++..+..  ..++  .|.+.++...................
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~  177 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDAD  177 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEE
T ss_pred             eEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccc
Confidence            76665555444333  333333333334444445566766654432  2333  46666665543332222211222344


Q ss_pred             ecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecC---CCcEEEecCCCC
Q 018784          235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSE---DGTIRIWQTNPP  302 (350)
Q Consensus       235 ~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~---Dg~v~vw~~~~~  302 (350)
                      +.+....++.+....+...+|.............+........|||||+.|+-.+.   ...|++++++..
T Consensus       178 ~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~  248 (269)
T d2hqsa1         178 VSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR  248 (269)
T ss_dssp             ECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred             cccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence            55543334444444455455444332222233345556778899999998874443   346788887543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.90  E-value=4.9e-07  Score=79.07  Aligned_cols=254  Identities=10%  Similarity=0.064  Sum_probs=139.6

Q ss_pred             eeCCCCcee--ee-ccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeee-e--eccccEeEEEEcCCCCe--E
Q 018784           46 RNGETGDWI--GT-FEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS-F--EHKHIVRACAFSEDTHL--L  117 (350)
Q Consensus        46 w~~~~~~~~--~~-l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~-~--~h~~~V~~~~~~~~~~~--l  117 (350)
                      +|.+++++.  .. .......+.-++++++++++.++.. +.+..|.+........ .  ........++++++++.  +
T Consensus        21 fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v   99 (365)
T d1jofa_          21 FDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFL   99 (365)
T ss_dssp             EETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEE
T ss_pred             EcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEE
Confidence            555565542  11 1123334456899999998877654 5677776653322221 1  12234566778888874  3


Q ss_pred             EEee-CCCeEEEEECCC------------CCCCCee----ecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCC-Cc
Q 018784          118 LTGG-FEKILRIFDLNR------------PDAPPRE----VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS-GK  179 (350)
Q Consensus       118 ~sg~-~d~~v~vwd~~~------------~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~-~~  179 (350)
                      +++. ..+.|..+.+..            .......    .......+.++.|+|++..++++......|.+|+... +.
T Consensus       100 ~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~  179 (365)
T d1jofa_         100 LAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE  179 (365)
T ss_dssp             EECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred             EEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCc
Confidence            3332 234454443321            1110000    0112335778999877776777666666888887643 33


Q ss_pred             ee--Eee---cCCCCeEEEEEecCCcEEEEEc--CCcEEEEECCCcceee-----eeecCC---------------CCce
Q 018784          180 IV--QTL---ETKSPVTSAEVSRDGRYITTAD--GSSVKFWDANHFGLVK-----GYNMPC---------------NTES  232 (350)
Q Consensus       180 ~~--~~~---~~~~~v~~~~~~~~~~~l~~~~--~~~i~vwd~~~~~~~~-----~~~~~~---------------~~~~  232 (350)
                      ..  ...   ........+.|+|+++++....  ++.|.+|+........     ......               ....
T Consensus       180 ~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (365)
T d1jofa_         180 VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADV  259 (365)
T ss_dssp             EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEE
T ss_pred             eeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccc
Confidence            22  111   2245678899999999875543  5789999876543221     111100               0112


Q ss_pred             eEecCCCCcEEEEec-C-----CCeEEEEEcccCeeEE---e---ecCCCcCEEEEEEcC-CCCEEE-EecCCCcEEEec
Q 018784          233 ASLEPKLGNIFIAGG-E-----DMWVHVFDFHTGEQIG---C---NKGHHGPVHCVRFSP-GGESYA-SGSEDGTIRIWQ  298 (350)
Q Consensus       233 ~~~~~~~~~~l~sg~-~-----d~~i~v~d~~~~~~~~---~---~~~h~~~v~~l~~sp-~~~~la-sgs~Dg~v~vw~  298 (350)
                      +.+.| ++++|.++. .     ...|..|++.....+.   .   ..........++++| +|++|+ +...++.|.+|+
T Consensus       260 i~~sp-dG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~  338 (365)
T d1jofa_         260 CALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             EEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred             eEECC-CCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEE
Confidence            34555 466555442 2     2237777765422111   1   112334567899998 788765 556789999998


Q ss_pred             CCC
Q 018784          299 TNP  301 (350)
Q Consensus       299 ~~~  301 (350)
                      ++.
T Consensus       339 ~~~  341 (365)
T d1jofa_         339 WKD  341 (365)
T ss_dssp             EET
T ss_pred             EeC
Confidence            754

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.89  E-value=6.3e-07  Score=78.37  Aligned_cols=240  Identities=9%  Similarity=0.098  Sum_probs=136.6

Q ss_pred             CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC-CceeeeccCc--cCCeEEEEECCCCcE--EEEee-CCCeEEEee
Q 018784           16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIGTFEGH--KGAVWSCCLDANALF--SASGS-ADFTAKLWD   89 (350)
Q Consensus        16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~-~~~~~~l~gH--~~~V~~v~~~~~~~~--l~s~s-~Dg~v~vWd   89 (350)
                      ..+++-|+|+|   ++++|.+++. +.+..|.... +..+ .+..+  ......++++++++.  ++++. ..++|..+.
T Consensus        39 ~~~~s~la~s~---d~~~ly~~~~-~~~~~~~i~~~~~~~-~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~  113 (365)
T d1jofa_          39 DEPISWMTFDH---ERKNIYGAAM-KKWSSFAVKSPTEIV-HEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANP  113 (365)
T ss_dssp             TCCCSEEEECT---TSSEEEEEEB-TEEEEEEEEETTEEE-EEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEE
T ss_pred             CCCCCEEEEcC---CCCEEEEEeC-CcEEEEEEeCCCCeE-EEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeE
Confidence            44556688876   9988877655 4566665432 2222 22111  122234567777763  33332 234554443


Q ss_pred             CCC-------------CCeeeee-----eccccEeEEEEcCCCCeEEEeeC-CCeEEEEECCCCCCCCe----eecCCCC
Q 018784           90 ALT-------------GDEKHSF-----EHKHIVRACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPR----EVGNSSG  146 (350)
Q Consensus        90 ~~~-------------~~~~~~~-----~h~~~V~~~~~~~~~~~l~sg~~-d~~v~vwd~~~~~~~~~----~~~~~~~  146 (350)
                      ...             +......     .....+.++.|+|+|+++++++. ...|.+|+.........    .......
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~  193 (365)
T d1jofa_         114 FYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD  193 (365)
T ss_dssp             ESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred             ccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCC
Confidence            211             1100000     11234789999999998887754 46788887653322111    1112345


Q ss_pred             cEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCcee--Ee---ecC---------------CCCeEEEEEecCCcEEEEEc
Q 018784          147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV--QT---LET---------------KSPVTSAEVSRDGRYITTAD  206 (350)
Q Consensus       147 ~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~--~~---~~~---------------~~~v~~~~~~~~~~~l~~~~  206 (350)
                      ..+.++|.+++..+++++..+++|.+|++..++..  ..   +..               ......+.++|+|++|.++.
T Consensus       194 gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence            67889998877778888888999999998765422  11   110               11245688999999987652


Q ss_pred             --C-----CcEEEEECCCcceeeee----e---cCCCCceeEecCCCCcEE-EEecCCCeEEEEEcccC
Q 018784          207 --G-----SSVKFWDANHFGLVKGY----N---MPCNTESASLEPKLGNIF-IAGGEDMWVHVFDFHTG  260 (350)
Q Consensus       207 --~-----~~i~vwd~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~l-~sg~~d~~i~v~d~~~~  260 (350)
                        +     ..|..|++.....+...    .   .......+.+.+.++++| +++..++.|.+|+++..
T Consensus       274 r~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         274 RANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             ccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence              1     23667776543322111    1   112344566666567755 55567789999987654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.84  E-value=7.9e-07  Score=75.51  Aligned_cols=193  Identities=12%  Similarity=0.092  Sum_probs=131.0

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe--
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE--   95 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~--   95 (350)
                      .+..++++|   ||+++++...+++|..++.. ++. ..+......+.++++++++.++++...++.+.+|+......  
T Consensus        29 ~~e~iAv~p---dG~l~vt~~~~~~I~~i~p~-g~~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~  103 (302)
T d2p4oa1          29 FLENLASAP---DGTIFVTNHEVGEIVSITPD-GNQ-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  103 (302)
T ss_dssp             CEEEEEECT---TSCEEEEETTTTEEEEECTT-CCE-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CcCCEEECC---CCCEEEEeCCCCEEEEEeCC-CCE-EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccce
Confidence            356788776   99999999999988888754 332 34444557789999999999999988888888887654332  


Q ss_pred             eee--eeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee---------ecCCCCcEEEEEEeCCCCcEEEEE
Q 018784           96 KHS--FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE---------VGNSSGSIRTVAWLHSDQTILSSC  164 (350)
Q Consensus        96 ~~~--~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~~~~s~  164 (350)
                      ...  .......+.+++.++++++++-+.++.+..++..........         ..........+.+.  ++.++++.
T Consensus       104 ~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~  181 (302)
T d2p4oa1         104 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSN  181 (302)
T ss_dssp             EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEE
T ss_pred             eeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeec
Confidence            211  123456889999999999888888888888887643211100         01112234455543  45677777


Q ss_pred             eCCCeEEEEECCCCceeE---eecCCCCeEEEEEecCCcEEEEE-cCCcEEEEECCC
Q 018784          165 TDSGGVRLWDARSGKIVQ---TLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANH  217 (350)
Q Consensus       165 ~~dg~i~iwd~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~  217 (350)
                      +..+.|..+++.......   ..........++++++|+++++. .++.|..++...
T Consensus       182 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         182 TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred             CCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC
Confidence            888899988876543221   11123345668999999877665 467788887754

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.76  E-value=1.1e-05  Score=68.84  Aligned_cols=155  Identities=9%  Similarity=-0.003  Sum_probs=98.6

Q ss_pred             ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCC----CeEEEeeCCCC
Q 018784           18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD----FTAKLWDALTG   93 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D----g~v~vWd~~~~   93 (350)
                      .+-.++|++   +|++.++-...+.|..|+.++++....+.........++++++|.++++...+    +.+...+..+.
T Consensus        41 ~lEG~~~D~---~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          41 QLEGLNFDR---QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             CEEEEEECT---TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CcEeCEECC---CCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            345777875   89888888888999889988776665555555667899999999988765433    33444454444


Q ss_pred             Ceeeeeec---cccEeEEEEcCCCCeEEEeeC------CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEE
Q 018784           94 DEKHSFEH---KHIVRACAFSEDTHLLLTGGF------EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC  164 (350)
Q Consensus        94 ~~~~~~~h---~~~V~~~~~~~~~~~l~sg~~------d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~  164 (350)
                      .......+   ...+..+++.++|.+.++...      .+.+..++....  ........-.....++|+++++.++++-
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~--~~~~~~~~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR--TVTPIIQNISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC--CEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc--eeEEEeeccceeeeeeeccccceEEEec
Confidence            43333322   234778999999987665322      122444443321  1122222223456788887777777777


Q ss_pred             eCCCeEEEEECCC
Q 018784          165 TDSGGVRLWDARS  177 (350)
Q Consensus       165 ~~dg~i~iwd~~~  177 (350)
                      +..+.|..||+..
T Consensus       196 ~~~~~I~~~d~~~  208 (319)
T d2dg1a1         196 TTANRLHRIALED  208 (319)
T ss_dssp             GGGTEEEEEEECT
T ss_pred             ccCCceEEEEEcC
Confidence            7778898888753

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.74  E-value=1.2e-05  Score=68.33  Aligned_cols=233  Identities=13%  Similarity=0.152  Sum_probs=142.0

Q ss_pred             eEEEecccCCCccEEEEEeC-------CCCeeEeeCCCCceeeeccCcc----CCeEEEEECCCCcEEEEeeCCCeEEEe
Q 018784           20 VDLFYSPITPDGFFLVSASK-------DSSPMLRNGETGDWIGTFEGHK----GAVWSCCLDANALFSASGSADFTAKLW   88 (350)
Q Consensus        20 ~~~~~~~~s~dg~~lasgs~-------d~~v~iw~~~~~~~~~~l~gH~----~~V~~v~~~~~~~~l~s~s~Dg~v~vW   88 (350)
                      -.++|++   +|++.++...       +++|..||.++++.........    +.-..+++++++..++.+.....|...
T Consensus        21 EGpa~d~---dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          21 EGPVFDK---NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             EEEEECT---TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             eEeEEeC---CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            3456765   8987776433       4568888888876654332222    123578999999877777777778888


Q ss_pred             eCCCCCeeeee-ecc----ccEeEEEEcCCCCeEEEeeC---------------CCeEEEEECCCCCCCCeeecCCCCcE
Q 018784           89 DALTGDEKHSF-EHK----HIVRACAFSEDTHLLLTGGF---------------EKILRIFDLNRPDAPPREVGNSSGSI  148 (350)
Q Consensus        89 d~~~~~~~~~~-~h~----~~V~~~~~~~~~~~l~sg~~---------------d~~v~vwd~~~~~~~~~~~~~~~~~v  148 (350)
                      +.......... ...    ...+.+++.++|.+.++-..               .+.|..++.+  .. .......-...
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d--g~-~~~~~~~~~~p  174 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQ-MIQVDTAFQFP  174 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SC-EEEEEEEESSE
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec--Cc-eeEeeCCccee
Confidence            87654322211 111    23577899999988776422               1233333322  11 11111112234


Q ss_pred             EEEEEeCCCC----cEEEEEeCCCeEEEEECCCCceeE------eecC--CCCeEEEEEecCCcEEEEE-cCCcEEEEEC
Q 018784          149 RTVAWLHSDQ----TILSSCTDSGGVRLWDARSGKIVQ------TLET--KSPVTSAEVSRDGRYITTA-DGSSVKFWDA  215 (350)
Q Consensus       149 ~~~~~~~~~~----~~~~s~~~dg~i~iwd~~~~~~~~------~~~~--~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~  215 (350)
                      ..++|.+...    .++++-+..+.|..+|+.....+.      .+..  ......+++..+|++.++. ..+.|.+||.
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp  254 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence            5677776543    466666777889888875432221      2221  1234678999999887665 4678999998


Q ss_pred             CCcceeeeeecCCC-CceeEecCCCCcEEEEecCCCeEEEEEcc
Q 018784          216 NHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFH  258 (350)
Q Consensus       216 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~  258 (350)
                      .....+..+..+.. ...+.|.++...++++.+.++.|..+++.
T Consensus       255 ~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            87766666666543 44566765433578888888988888874

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.65  E-value=6.4e-06  Score=68.86  Aligned_cols=175  Identities=13%  Similarity=0.232  Sum_probs=119.9

Q ss_pred             eCCCCeeEeeCCCCceeeecc-CccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee---ccccEeEEEEcCC
Q 018784           38 SKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE---HKHIVRACAFSED  113 (350)
Q Consensus        38 s~d~~v~iw~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~---h~~~V~~~~~~~~  113 (350)
                      +.++.+..++. .++....+. .+......+++.+++.++++....+.+.+++.. ++.+..+.   +......+++.++
T Consensus        90 ~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~  167 (279)
T d1q7fa_          90 SPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDK  167 (279)
T ss_dssp             GGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSS
T ss_pred             CCccccccccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeeccc
Confidence            34445555554 466655553 344556788999999988887777888888864 44444442   4456788999999


Q ss_pred             CCeEEEeeCCCeEEEEECCCCCCCCeeec--CCCCcEEEEEEeCCCCcEEEEE-eCCCeEEEEECCCCceeEeecCC---
Q 018784          114 THLLLTGGFEKILRIFDLNRPDAPPREVG--NSSGSIRTVAWLHSDQTILSSC-TDSGGVRLWDARSGKIVQTLETK---  187 (350)
Q Consensus       114 ~~~l~sg~~d~~v~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~s~-~~dg~i~iwd~~~~~~~~~~~~~---  187 (350)
                      ++++++....+.|.+||....  .....+  ........+++.+.+ .++++- ..++.|.+++ .+|+.+..+...   
T Consensus       168 g~i~v~d~~~~~V~~~d~~G~--~~~~~g~~g~~~~P~giavD~~G-~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~  243 (279)
T d1q7fa_         168 QEIFISDNRAHCVKVFNYEGQ--YLRQIGGEGITNYPIGVGINSNG-EILIADNHNNFNLTIFT-QDGQLISALESKVKH  243 (279)
T ss_dssp             SEEEEEEGGGTEEEEEETTCC--EEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSCEEEEEC-TTSCEEEEEEESSCC
T ss_pred             eeEEeeeccccceeeeecCCc--eeeeecccccccCCcccccccCC-eEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCC
Confidence            998888888999999997532  122222  233457788876655 455554 3445799998 468777666432   


Q ss_pred             CCeEEEEEecCCcEEEEEcCCcEEEEECCCc
Q 018784          188 SPVTSAEVSRDGRYITTADGSSVKFWDANHF  218 (350)
Q Consensus       188 ~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~  218 (350)
                      .....+++.++|+++++..+..|++|.-.+.
T Consensus       244 ~~p~~vav~~dG~l~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         244 AQCFDVALMDDGSVVLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             SCEEEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred             CCEeEEEEeCCCcEEEEeCCCeEEEEEeeee
Confidence            3578899999999888877888999976543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.63  E-value=1e-05  Score=66.82  Aligned_cols=197  Identities=10%  Similarity=0.054  Sum_probs=125.8

Q ss_pred             ccccEeEEEEcCCCCeEEEe-eCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCc
Q 018784          101 HKHIVRACAFSEDTHLLLTG-GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK  179 (350)
Q Consensus       101 h~~~V~~~~~~~~~~~l~sg-~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~  179 (350)
                      +......+++.++|++.++. +..+.+..++........ ...........+++.+ ++.++++....+.+++++..++.
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~   89 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQ   89 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEE-CCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCC
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEE-eccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeeccce
Confidence            44567899999999966654 455777777654322111 1111123345667665 45677777776777777666665


Q ss_pred             eeEeecCCCCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceee-eeecCCCCceeEecCCCCcEEEEecCCCeEEEEEc
Q 018784          180 IVQTLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVK-GYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDF  257 (350)
Q Consensus       180 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~  257 (350)
                      .+...........+++.++++++++.. +..+..++........ .......+..+.+.+ .++++++...++.|..+|.
T Consensus        90 ~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~~~v~~~~~~~i~~~d~  168 (260)
T d1rwia_          90 TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEA  168 (260)
T ss_dssp             EECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECT-TCCEEEEEGGGTEEEEECT
T ss_pred             eeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecC-CCCEeeecccccccccccc
Confidence            554444456678899999998877654 3456666654432211 111112334455555 5788888888899999998


Q ss_pred             ccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          258 HTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       258 ~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      ..................|++.++|.++++....+.|..++..
T Consensus       169 ~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~  211 (260)
T d1rwia_         169 ESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG  211 (260)
T ss_dssp             TTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTT
T ss_pred             ccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCC
Confidence            7655443333555667999999999999999888988888654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=0.00046  Score=61.67  Aligned_cols=278  Identities=14%  Similarity=0.087  Sum_probs=142.5

Q ss_pred             ceeEEEecccCCCccEEEEEe---------CCCCeeEeeCCCCceeee--ccCccCCeEEEEECCCCcEEEEeeCCCeEE
Q 018784           18 PVVDLFYSPITPDGFFLVSAS---------KDSSPMLRNGETGDWIGT--FEGHKGAVWSCCLDANALFSASGSADFTAK   86 (350)
Q Consensus        18 ~v~~~~~~~~s~dg~~lasgs---------~d~~v~iw~~~~~~~~~~--l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~   86 (350)
                      .+....||   |||++|+.+.         ..+...|+|+.+++....  .......+....|+|+|+.+|=. .++.|.
T Consensus        62 ~~~~~~~S---pD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv-~~~nl~  137 (465)
T d1xfda1          62 RAIRYEIS---PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI-FENNIY  137 (465)
T ss_dssp             TCSEEEEC---TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEE-ETTEEE
T ss_pred             ccceeEEC---CCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEE-ecceEE
Confidence            34444445   5999887764         345677889888765432  23334455557899999877643 467888


Q ss_pred             EeeCCCCCeeeeee--cccc-----------------EeEEEEcCCCCeEEEeeCC-CeEE-------------------
Q 018784           87 LWDALTGDEKHSFE--HKHI-----------------VRACAFSEDTHLLLTGGFE-KILR-------------------  127 (350)
Q Consensus        87 vWd~~~~~~~~~~~--h~~~-----------------V~~~~~~~~~~~l~sg~~d-~~v~-------------------  127 (350)
                      +.+..++.......  ..+.                 -.++.|+|||+.||....| ..|.                   
T Consensus       138 ~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~  217 (465)
T d1xfda1         138 YCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYH  217 (465)
T ss_dssp             EESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEE
T ss_pred             EEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeee
Confidence            88876655433221  1111                 1467799999999876432 2233                   


Q ss_pred             --------------EEECCCCCCCCeee-----cCCCCcEEEEEEeCCCCcEEEEEeCC---CeEEEEECCCCceeEeec
Q 018784          128 --------------IFDLNRPDAPPREV-----GNSSGSIRTVAWLHSDQTILSSCTDS---GGVRLWDARSGKIVQTLE  185 (350)
Q Consensus       128 --------------vwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~s~~~d---g~i~iwd~~~~~~~~~~~  185 (350)
                                    ++|+..+.......     .....-+..+.|.+++..++.....+   ..|.++|..++++.....
T Consensus       218 Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~  297 (465)
T d1xfda1         218 YPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE  297 (465)
T ss_dssp             CCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred             ccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEE
Confidence                          33333221110000     01111255677876544333333333   258889999987654433


Q ss_pred             C--CC----CeEEEEEecCCcE---EEEEc-C--CcEEEEECC------CcceeeeeecCCCC--ceeEecCCCCcEEEE
Q 018784          186 T--KS----PVTSAEVSRDGRY---ITTAD-G--SSVKFWDAN------HFGLVKGYNMPCNT--ESASLEPKLGNIFIA  245 (350)
Q Consensus       186 ~--~~----~v~~~~~~~~~~~---l~~~~-~--~~i~vwd~~------~~~~~~~~~~~~~~--~~~~~~~~~~~~l~s  245 (350)
                      .  ..    .-....|+++|+.   +.... +  +.+...++.      ..+.++.++...-.  ....+....+.++.+
T Consensus       298 e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~  377 (465)
T d1xfda1         298 DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFL  377 (465)
T ss_dssp             EECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEE
T ss_pred             EcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEE
Confidence            2  11    1123568888873   22222 2  234443321      11222222221111  122344444556666


Q ss_pred             ecCCC--eEEEEEc--ccCeeEEee---cCCCcCEEEEEEcCCCCEEEEecCC---CcEEEecC
Q 018784          246 GGEDM--WVHVFDF--HTGEQIGCN---KGHHGPVHCVRFSPGGESYASGSED---GTIRIWQT  299 (350)
Q Consensus       246 g~~d~--~i~v~d~--~~~~~~~~~---~~h~~~v~~l~~sp~~~~lasgs~D---g~v~vw~~  299 (350)
                      +..++  .-+||.+  ..+.....+   ........++.|||++++++-.+..   =.+.+++.
T Consensus       378 a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~  441 (465)
T d1xfda1         378 STEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNT  441 (465)
T ss_dssp             ESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEET
T ss_pred             EeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEEC
Confidence            65442  3345544  333222222   2344457799999999998743322   23555544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=0.00045  Score=61.76  Aligned_cols=195  Identities=11%  Similarity=-0.013  Sum_probs=114.2

Q ss_pred             cCCCccEEEEEeCCCCeeEeeCCCCceeeeccCc---cCCeEEEEECCCCcEEEEe---------eCCCeEEEeeCCCCC
Q 018784           27 ITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH---KGAVWSCCLDANALFSASG---------SADFTAKLWDALTGD   94 (350)
Q Consensus        27 ~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH---~~~V~~v~~~~~~~~l~s~---------s~Dg~v~vWd~~~~~   94 (350)
                      +.+++.++.. ..|+.+.+||+.+++....+..+   .-.+....++||+++++-.         +..+.+.++|+.++.
T Consensus        24 W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~  102 (465)
T d1xfda1          24 WISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD  102 (465)
T ss_dssp             BSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred             EeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence            3457766553 56788999999887654333332   2356677899999976644         345788889998876


Q ss_pred             eeeeee---ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCC-----------------CcEEEEEEe
Q 018784           95 EKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS-----------------GSIRTVAWL  154 (350)
Q Consensus        95 ~~~~~~---h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~-----------------~~v~~~~~~  154 (350)
                      ......   ....+....|+|+|+.||=.. ++.|.+.+...+...........                 +.-..+.|+
T Consensus       103 ~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WS  181 (465)
T d1xfda1         103 PQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWS  181 (465)
T ss_dssp             CEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEEC
T ss_pred             eeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEEC
Confidence            543321   233456688999999987654 55677777654332211111111                 112456688


Q ss_pred             CCCCcEEEEEeCCCe---------------------------------EEEEECCCCceeEeecC-------CCCeEEEE
Q 018784          155 HSDQTILSSCTDSGG---------------------------------VRLWDARSGKIVQTLET-------KSPVTSAE  194 (350)
Q Consensus       155 ~~~~~~~~s~~~dg~---------------------------------i~iwd~~~~~~~~~~~~-------~~~v~~~~  194 (350)
                      |++..++..-.++..                                 +.++|+.++........       ...+..+.
T Consensus       182 PDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~  261 (465)
T d1xfda1         182 PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVK  261 (465)
T ss_dssp             TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEE
T ss_pred             CCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeE
Confidence            777666655433333                                 33444433322111110       11256778


Q ss_pred             EecCCcEEEEEc--C---CcEEEEECCCcceeee
Q 018784          195 VSRDGRYITTAD--G---SSVKFWDANHFGLVKG  223 (350)
Q Consensus       195 ~~~~~~~l~~~~--~---~~i~vwd~~~~~~~~~  223 (350)
                      |.+++++++...  +   ..+.++|..++.+...
T Consensus       262 W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~  295 (465)
T d1xfda1         262 WATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK  295 (465)
T ss_dssp             ESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred             EcCCCeEEEEEEccccccceEEEEcCCCCcEEEE
Confidence            999998776532  2   2478889888765443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.14  E-value=0.00055  Score=55.93  Aligned_cols=229  Identities=11%  Similarity=0.026  Sum_probs=109.1

Q ss_pred             ECCC--CcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEee----CCC--eEEEEECCCCCCCCe-
Q 018784           69 LDAN--ALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGG----FEK--ILRIFDLNRPDAPPR-  139 (350)
Q Consensus        69 ~~~~--~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~----~d~--~v~vwd~~~~~~~~~-  139 (350)
                      ++|+  |..+|=. .+|.|.+.|+.+++......+...+...+|+|||+.||-..    .+.  .|.++++..+..... 
T Consensus         6 ~sPdi~G~~v~f~-~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt   84 (281)
T d1k32a2           6 LNPDIHGDRIIFV-CCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT   84 (281)
T ss_dssp             EEEEEETTEEEEE-ETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECC
T ss_pred             cCCCCCCCEEEEE-eCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEee
Confidence            4566  7765533 35567777998887765556777889999999999887432    222  355556554322110 


Q ss_pred             ----eecCCCCcEEEEEEeCCCCcEEEEEeCC-----CeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcC---
Q 018784          140 ----EVGNSSGSIRTVAWLHSDQTILSSCTDS-----GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG---  207 (350)
Q Consensus       140 ----~~~~~~~~v~~~~~~~~~~~~~~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---  207 (350)
                          .............|+++++.++.+...+     ..+...+...+......  ........+.+.+.++.....   
T Consensus        85 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  162 (281)
T d1k32a2          85 YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN--LGPATHILFADGRRVIGRNTFELP  162 (281)
T ss_dssp             CCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC--SCSCSEEEEETTEEEEEESCSCCT
T ss_pred             ecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec--CCccceeeecCCCeEEEeeccccc
Confidence                0011122345667776666555543222     23444555444432221  112222223333333332210   


Q ss_pred             ---------CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCC--CeEEEEEcccCeeEEeecCCCcCEEEE
Q 018784          208 ---------SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED--MWVHVFDFHTGEQIGCNKGHHGPVHCV  276 (350)
Q Consensus       208 ---------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d--~~i~v~d~~~~~~~~~~~~h~~~v~~l  276 (350)
                               ..............................  ..++.....+  ..|+++|+.+++.. .+..+.. ....
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~d~~g~~~~-~lt~~~~-~~~~  238 (281)
T d1k32a2         163 HWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG--HRIYFITDIDGFGQIYSTDLDGKDLR-KHTSFTD-YYPR  238 (281)
T ss_dssp             TSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET--TEEEEEECTTSSCEEEEEETTSCSCE-ECCCCCS-SCEE
T ss_pred             eeeeeccCCcceeeeeccccceeeccCCccccceeeeec--cccceecccccccceEEEeCCCCceE-EeecCCC-cccc
Confidence                     011111111111111111111111112221  2233333333  35777888765543 2322221 1224


Q ss_pred             EEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784          277 RFSPGGESYASGSEDGTIRIWQTNPPNHE  305 (350)
Q Consensus       277 ~~sp~~~~lasgs~Dg~v~vw~~~~~~~~  305 (350)
                      .|+|||+.|+- ..++.|+++|+...+..
T Consensus       239 ~~SpDG~~I~f-~~~~~l~~~d~~~g~~~  266 (281)
T d1k32a2         239 HLNTDGRRILF-SKGGSIYIFNPDTEKIE  266 (281)
T ss_dssp             EEEESSSCEEE-EETTEEEEECTTTCCEE
T ss_pred             cCcCCCCEEEE-EeCCEEEEEECCCCCEE
Confidence            68999988775 34678999988765544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.14  E-value=0.0015  Score=54.41  Aligned_cols=217  Identities=12%  Similarity=0.044  Sum_probs=128.5

Q ss_pred             EECC-CCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee---cC
Q 018784           68 CLDA-NALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV---GN  143 (350)
Q Consensus        68 ~~~~-~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~---~~  143 (350)
                      .|++ ++.+..+=-..+.|.-||..+++. ..+.....+.++++.+++.++++ +.+ .+.++|..+++......   ..
T Consensus        24 ~wd~~~~~l~wvDi~~~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~  100 (295)
T d2ghsa1          24 TFDPASGTAWWFNILERELHELHLASGRK-TVHALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDL  100 (295)
T ss_dssp             EEETTTTEEEEEEGGGTEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTC
T ss_pred             eEECCCCEEEEEECCCCEEEEEECCCCeE-EEEECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCC
Confidence            3443 344444434557788888877643 34455667889999999877765 444 58888987654321111   11


Q ss_pred             CCCcEEEEEEeCCCCcEEEEEeC----CCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE--cCCcEEEEECCC
Q 018784          144 SSGSIRTVAWLHSDQTILSSCTD----SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANH  217 (350)
Q Consensus       144 ~~~~v~~~~~~~~~~~~~~s~~~----dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~vwd~~~  217 (350)
                      ....+..+...+. +.+.++...    .+.-.+|.+..++...........+.+.++++++.+..+  ..+.|..+++..
T Consensus       101 ~~~~~nd~~vd~~-G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~  179 (295)
T d2ghsa1         101 PGNRSNDGRMHPS-GALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA  179 (295)
T ss_dssp             TTEEEEEEEECTT-SCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT
T ss_pred             CcccceeeEECCC-CCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecc
Confidence            1234666665544 445444322    134556666666655444444556788999999765433  356788887642


Q ss_pred             cc--e---eee-eecC---CCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEc-CCCC-EEE
Q 018784          218 FG--L---VKG-YNMP---CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFS-PGGE-SYA  286 (350)
Q Consensus       218 ~~--~---~~~-~~~~---~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s-p~~~-~la  286 (350)
                      ..  .   ... ....   ..+....+. .++++.++....+.|..||- +|+.+..+.-....+++++|- |+.+ +++
T Consensus       180 ~~~~~~~~~~~~~~~~~~~g~pdG~~vD-~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         180 RTGLPTGKAEVFIDSTGIKGGMDGSVCD-AEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             TTCCBSSCCEEEEECTTSSSEEEEEEEC-TTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEE
T ss_pred             cccccccceEEEeccCcccccccceEEc-CCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEE
Confidence            11  1   111 1111   112333443 35788888878889999994 688887776655679999996 5654 445


Q ss_pred             EecC
Q 018784          287 SGSE  290 (350)
Q Consensus       287 sgs~  290 (350)
                      |.+.
T Consensus       258 Tta~  261 (295)
T d2ghsa1         258 TSAR  261 (295)
T ss_dssp             EEBC
T ss_pred             EECC
Confidence            5443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.13  E-value=0.0017  Score=54.66  Aligned_cols=194  Identities=10%  Similarity=0.130  Sum_probs=118.3

Q ss_pred             EeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeC----CCeEEEEECCCCce
Q 018784          105 VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD----SGGVRLWDARSGKI  180 (350)
Q Consensus       105 V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~----dg~i~iwd~~~~~~  180 (350)
                      +..++|.++|++.++-...+.|..|+...... .............+++.+ ++.++++...    .+.+...+...+..
T Consensus        42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~-~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-KRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             cEeCEECCCCCEEEEECCCCEEEEEECCCCeE-EEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCcee
Confidence            46889999998777777788888888764322 222233445677888765 4556555432    23455556555544


Q ss_pred             eEeecC---CCCeEEEEEecCCcEEEEEcC-------CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCC
Q 018784          181 VQTLET---KSPVTSAEVSRDGRYITTADG-------SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM  250 (350)
Q Consensus       181 ~~~~~~---~~~v~~~~~~~~~~~l~~~~~-------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~  250 (350)
                      ......   ....+.+.+.++|++.++...       +.+..++............-.....+.+.+....++++-+..+
T Consensus       120 ~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~  199 (319)
T d2dg1a1         120 QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTAN  199 (319)
T ss_dssp             EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGT
T ss_pred             eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCC
Confidence            333332   345788999999998776432       2355555443221111111112334566665445778888889


Q ss_pred             eEEEEEccc-CeeEE-------eecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784          251 WVHVFDFHT-GEQIG-------CNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       251 ~i~v~d~~~-~~~~~-------~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      .|+.|++.. +....       .........-.|++.++|+++++....+.|.+++-.
T Consensus       200 ~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~  257 (319)
T d2dg1a1         200 RLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR  257 (319)
T ss_dssp             EEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             ceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC
Confidence            999999853 22111       111112235679999999998888889999999853

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.10  E-value=0.0022  Score=55.11  Aligned_cols=260  Identities=13%  Similarity=0.110  Sum_probs=136.2

Q ss_pred             CCccEEEEEeCCC-----------CeeEeeCCCCceeee--c-cCccCCeEEEEECCCCcEEEEeeCC-CeEEEeeCCCC
Q 018784           29 PDGFFLVSASKDS-----------SPMLRNGETGDWIGT--F-EGHKGAVWSCCLDANALFSASGSAD-FTAKLWDALTG   93 (350)
Q Consensus        29 ~dg~~lasgs~d~-----------~v~iw~~~~~~~~~~--l-~gH~~~V~~v~~~~~~~~l~s~s~D-g~v~vWd~~~~   93 (350)
                      .+|++++-|+.+.           .+.+||..++++...  + ..|.....+.++.+++.+++.|+.+ .++.+||..+.
T Consensus        29 ~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~  108 (387)
T d1k3ia3          29 TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD  108 (387)
T ss_dssp             TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT
T ss_pred             eCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccC
Confidence            4889888888532           256899998877532  2 2233333456788999999988766 68999998776


Q ss_pred             Ceeee--eeccccEeEEEEcCCCCeEEEeeCC------CeEEEEECCCCCCC------Ce--eecCCCC----cEEEEEE
Q 018784           94 DEKHS--FEHKHIVRACAFSEDTHLLLTGGFE------KILRIFDLNRPDAP------PR--EVGNSSG----SIRTVAW  153 (350)
Q Consensus        94 ~~~~~--~~h~~~V~~~~~~~~~~~l~sg~~d------~~v~vwd~~~~~~~------~~--~~~~~~~----~v~~~~~  153 (350)
                      .-...  ......-.+++..+++++++.|+.+      ..+.+||..+.+..      ..  ....+..    .-....+
T Consensus       109 ~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (387)
T d1k3ia3         109 SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLF  188 (387)
T ss_dssp             EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEE
T ss_pred             cccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEE
Confidence            43221  1122233466778899999888753      35889998653210      00  0000000    0011122


Q ss_pred             eCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-------CC--CeEEEEE-ecCCcEEEEEc---------CCcEEEEE
Q 018784          154 LHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-------KS--PVTSAEV-SRDGRYITTAD---------GSSVKFWD  214 (350)
Q Consensus       154 ~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-------~~--~v~~~~~-~~~~~~l~~~~---------~~~i~vwd  214 (350)
                      ...++.++..++.++.+.++|..+.........       ..  .-.++.+ ..++++++.+.         .....+.+
T Consensus       189 ~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~  268 (387)
T d1k3ia3         189 GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIIT  268 (387)
T ss_dssp             ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEE
T ss_pred             EeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeeccc
Confidence            234555666666667777777766543222111       00  1122222 23566655432         11234444


Q ss_pred             CCCccee---eee--ecCCC--CceeEecCCCCcEEEEecCC-----------CeEEEEEcccCe--eEEeecCCCcCEE
Q 018784          215 ANHFGLV---KGY--NMPCN--TESASLEPKLGNIFIAGGED-----------MWVHVFDFHTGE--QIGCNKGHHGPVH  274 (350)
Q Consensus       215 ~~~~~~~---~~~--~~~~~--~~~~~~~~~~~~~l~sg~~d-----------~~i~v~d~~~~~--~~~~~~~h~~~v~  274 (350)
                      .......   ...  .++..  ....... .++++++.|+.+           ..+.+||..+.+  .+..+. +...-+
T Consensus       269 ~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~-~~R~~H  346 (387)
T d1k3ia3         269 LGEPGTSPNTVFASNGLYFARTFHTSVVL-PDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNS-IVRVYH  346 (387)
T ss_dssp             CCSTTSCCEEEECTTCCSSCCBSCEEEEC-TTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCS-SCCCTT
T ss_pred             ccccccCCCceeeccccccccccceeeec-cCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCC-Ccccce
Confidence            3322111   100  11111  1122233 357899998853           147889987654  222111 111111


Q ss_pred             -EEEEcCCCCEEEEecC
Q 018784          275 -CVRFSPGGESYASGSE  290 (350)
Q Consensus       275 -~l~~sp~~~~lasgs~  290 (350)
                       ...+.+||++|+.|+.
T Consensus       347 s~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         347 SISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             EEEEECTTSCEEEEECC
T ss_pred             EEEEECCCCEEEEEeCC
Confidence             2345789999998884

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.07  E-value=0.00084  Score=54.76  Aligned_cols=227  Identities=13%  Similarity=0.082  Sum_probs=114.5

Q ss_pred             CCC--ccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEe----eCCC--eEEEeeCCCCCeeeee
Q 018784           28 TPD--GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASG----SADF--TAKLWDALTGDEKHSF   99 (350)
Q Consensus        28 s~d--g~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~----s~Dg--~v~vWd~~~~~~~~~~   99 (350)
                      +||  |+.||-.+. +.|.+.|+.+++.. .|..+.+.+...+|+|||+.+|-.    +.+.  .|.+.+..+++.....
T Consensus         7 sPdi~G~~v~f~~~-~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt   84 (281)
T d1k32a2           7 NPDIHGDRIIFVCC-DDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT   84 (281)
T ss_dssp             EEEEETTEEEEEET-TEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECC
T ss_pred             CCCCCCCEEEEEeC-CcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEee
Confidence            357  877775544 56777788888764 566677788889999999987732    2222  3556666666544322


Q ss_pred             ec-------cccEeEEEEcCCCCeEEEeeC------CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeC
Q 018784          100 EH-------KHIVRACAFSEDTHLLLTGGF------EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD  166 (350)
Q Consensus       100 ~h-------~~~V~~~~~~~~~~~l~sg~~------d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~  166 (350)
                      .+       ........|+|+++.|+....      ...+...+......  .  ........ ..+.+++...+.....
T Consensus        85 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~-~~~~~~~~~~~~~~~~  159 (281)
T d1k32a2          85 YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF--V--PLNLGPAT-HILFADGRRVIGRNTF  159 (281)
T ss_dssp             CCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE--E--ECCSCSCS-EEEEETTEEEEEESCS
T ss_pred             ecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCcee--E--EecCCccc-eeeecCCCeEEEeecc
Confidence            21       223567889999998876432      12233444332111  1  11111111 1233334333333221


Q ss_pred             CC-----------eEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcC--CcEEEEECCCcceeeeeecCCCCcee
Q 018784          167 SG-----------GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG--SSVKFWDANHFGLVKGYNMPCNTESA  233 (350)
Q Consensus       167 dg-----------~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~~i~vwd~~~~~~~~~~~~~~~~~~~  233 (350)
                      +.           ..........................+.++..+.....+  ..|.++|+.+....+ +.........
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-lt~~~~~~~~  238 (281)
T d1k32a2         160 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRK-HTSFTDYYPR  238 (281)
T ss_dssp             CCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEE-CCCCCSSCEE
T ss_pred             ccceeeeeccCCcceeeeeccccceeeccCCccccceeeeeccccceecccccccceEEEeCCCCceEE-eecCCCcccc
Confidence            11           111222222222222222333344445555333333222  357888887655432 2222222233


Q ss_pred             EecCCCCcEEEEecCCCeEEEEEcccCeeEE
Q 018784          234 SLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG  264 (350)
Q Consensus       234 ~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~  264 (350)
                      .+.++ ++.|+. ..++.|+++|+.+++...
T Consensus       239 ~~SpD-G~~I~f-~~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         239 HLNTD-GRRILF-SKGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             EEEES-SSCEEE-EETTEEEEECTTTCCEEE
T ss_pred             cCcCC-CCEEEE-EeCCEEEEEECCCCCEEE
Confidence            45554 555444 335789999998876543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.76  E-value=0.0073  Score=49.99  Aligned_cols=211  Identities=9%  Similarity=-0.023  Sum_probs=132.7

Q ss_pred             CccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee-----cccc
Q 018784           30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-----HKHI  104 (350)
Q Consensus        30 dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-----h~~~  104 (350)
                      ++.+..+--..+.|.-||.++++.. .+. ....+.++++.+++.++++. . ..+.++|..+++......     ....
T Consensus        29 ~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va~-~-~gl~~~d~~tg~~~~l~~~~~~~~~~~  104 (295)
T d2ghsa1          29 SGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNR  104 (295)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEE
T ss_pred             CCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEEE-e-CccEEeecccceeeEEeeeecCCCccc
Confidence            5666666556778888998887654 222 23467788888899888764 4 458889988887544332     1235


Q ss_pred             EeEEEEcCCCCeEEEeeC----CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC--
Q 018784          105 VRACAFSEDTHLLLTGGF----EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG--  178 (350)
Q Consensus       105 V~~~~~~~~~~~l~sg~~----d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~--  178 (350)
                      ++.+.+.|+|.+.++...    .+.-.+|.+..++.  ......-.....++|++.+..++++-+..+.|..+++...  
T Consensus       105 ~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~--~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~  182 (295)
T d2ghsa1         105 SNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV--TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG  182 (295)
T ss_dssp             EEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE--EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC
T ss_pred             ceeeEECCCCCEEEEeccccccccceeEeeecCCcE--EEEeeccCCcceeeecCCCceEEEeecccceeeEeeeccccc
Confidence            788899999987665432    22334555543321  1111222345677888877778888888889999886421  


Q ss_pred             ----ceeEeec---CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCC-CceeEecCCC-CcEEEEec
Q 018784          179 ----KIVQTLE---TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKL-GNIFIAGG  247 (350)
Q Consensus       179 ----~~~~~~~---~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~l~sg~  247 (350)
                          +......   .......+++..+|.+.++. .++.|..||. .++.+..+.+|.. +.++.|-.++ ..++++..
T Consensus       183 ~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         183 LPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             CBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred             ccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEEC
Confidence                1111111   23446788899999887765 5678999996 4677778888754 3445554333 34555543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.49  E-value=0.02  Score=52.10  Aligned_cols=78  Identities=14%  Similarity=0.049  Sum_probs=46.7

Q ss_pred             cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecC-CCcCEEEEEEcCCCC-EEE
Q 018784          209 SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG-HHGPVHCVRFSPGGE-SYA  286 (350)
Q Consensus       209 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~-h~~~v~~l~~sp~~~-~la  286 (350)
                      .|.-+|+.+++.+..+........-.+.. .+.++.+|+.|+.++.+|.++|+.+=.+.. ....-.-+.|..+|+ |++
T Consensus       445 ~l~AiD~~TG~~~W~~~~~~~~~~g~l~T-agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~  523 (571)
T d2ad6a1         445 QIRAFDLTTGKAKWTKWEKFAAWGGTLYT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             EEEEECTTTCCEEEEEEESSCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cEEEeccCCCceeeEcCCCCCCCcceeEe-cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEE
Confidence            46777887777766555433222212221 256777899999999999999998855431 111112244555775 444


Q ss_pred             E
Q 018784          287 S  287 (350)
Q Consensus       287 s  287 (350)
                      .
T Consensus       524 v  524 (571)
T d2ad6a1         524 S  524 (571)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.32  E-value=0.04  Score=47.34  Aligned_cols=189  Identities=12%  Similarity=0.103  Sum_probs=111.6

Q ss_pred             CCCCeEEEee-CCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeC-CCCcEEEEEeCC------------------CeEE
Q 018784          112 EDTHLLLTGG-FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLH-SDQTILSSCTDS------------------GGVR  171 (350)
Q Consensus       112 ~~~~~l~sg~-~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~s~~~d------------------g~i~  171 (350)
                      +||++|+... .+..|.+.|+...+......-.....+..+.... +...+++..+++                  +++.
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            3788877654 6788999999765432211222223344444332 222344443332                  3467


Q ss_pred             EEECCCCceeEeecCCCCeEEEEEecCCcEEEEEc-C--------------------------------------CcEEE
Q 018784          172 LWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-G--------------------------------------SSVKF  212 (350)
Q Consensus       172 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~--------------------------------------~~i~v  212 (350)
                      ++|..+.+...++........+.++++|+++.+.+ +                                      +.+.+
T Consensus       177 ~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~V  256 (459)
T d1fwxa2         177 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  256 (459)
T ss_dssp             EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             EEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCcee
Confidence            88999988888877666677889999999876532 1                                      12344


Q ss_pred             EECCCc---ceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeE-----------EeecCCCcCEEEEEE
Q 018784          213 WDANHF---GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI-----------GCNKGHHGPVHCVRF  278 (350)
Q Consensus       213 wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~-----------~~~~~h~~~v~~l~~  278 (350)
                      .|.++.   ...+.+..+..+..+.+.|+...++++|..+.++-++|++.-+.+           .......-.....+|
T Consensus       257 VD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~f  336 (459)
T d1fwxa2         257 VDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAF  336 (459)
T ss_dssp             EECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEE
T ss_pred             ecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcccccc
Confidence            444321   122223333444556666654445667778999999998632211           111112223567789


Q ss_pred             cCCCCEEEEecCCCcEEEecCC
Q 018784          279 SPGGESYASGSEDGTIRIWQTN  300 (350)
Q Consensus       279 sp~~~~lasgs~Dg~v~vw~~~  300 (350)
                      ...|..+.|-=-|..|.-|++.
T Consensus       337 d~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         337 DGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             CTTSEEEEEETTTTEEEEEEHH
T ss_pred             CCCceEEEEeeccceEEEEecc
Confidence            8888666666789999999974

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.047  Score=44.07  Aligned_cols=206  Identities=9%  Similarity=-0.062  Sum_probs=124.4

Q ss_pred             ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCC-CcEEEEeeCCCeEEEeeCCC
Q 018784           14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALT   92 (350)
Q Consensus        14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~vWd~~~   92 (350)
                      .+...+.+++|++  .++++..+-..++.|+..++........+..-...+..++++.- +.+..+-...+.|.+.++..
T Consensus        33 ~~~~~~~~ld~D~--~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          33 IPAKVIIGLAFDC--VDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEET--TTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cCCCcEEEEEEEe--CCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            3344577888886  23445555556677777776655544444433356788888754 44555666778999999865


Q ss_pred             CCeeeeeec-cccEeEEEEcCCCCeEEEeeC-CCe--EEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784           93 GDEKHSFEH-KHIVRACAFSEDTHLLLTGGF-EKI--LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG  168 (350)
Q Consensus        93 ~~~~~~~~h-~~~V~~~~~~~~~~~l~sg~~-d~~--v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg  168 (350)
                      ......+.. -..+..+++.|...+++-... .+.  |..-+++... ........-.....+++.+.+++++.+-...+
T Consensus       111 ~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~-~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~  189 (263)
T d1npea_         111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTH  189 (263)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             ceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC-ceeeeeecccccceEEEeecCcEEEEEeCCCC
Confidence            544333322 356889999997776654322 223  4434554322 22222233356678888777787877767778


Q ss_pred             eEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeee
Q 018784          169 GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKG  223 (350)
Q Consensus       169 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~  223 (350)
                      +|...|+........+........+++. ++.+..+. ..+.|...|..+++.+..
T Consensus       190 ~I~~~~~~g~~~~~v~~~~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~  244 (263)
T d1npea_         190 RAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDT  244 (263)
T ss_dssp             EEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEEEEECCCCCeEEEECCCCCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceE
Confidence            9999998765443333333334567776 34444443 456788888877665543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.08  E-value=0.065  Score=45.32  Aligned_cols=115  Identities=14%  Similarity=0.140  Sum_probs=64.8

Q ss_pred             eEEEEECCCCcEEEEeeCCC-----------eEEEeeCCCCCeee--e--eeccccEeEEEEcCCCCeEEEeeCC-CeEE
Q 018784           64 VWSCCLDANALFSASGSADF-----------TAKLWDALTGDEKH--S--FEHKHIVRACAFSEDTHLLLTGGFE-KILR  127 (350)
Q Consensus        64 V~~v~~~~~~~~l~s~s~Dg-----------~v~vWd~~~~~~~~--~--~~h~~~V~~~~~~~~~~~l~sg~~d-~~v~  127 (350)
                      +...+...++++++-|+.+.           .+.+||..++.-..  .  ..+.......++.+++++++.|+.+ ..+.
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~  101 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  101 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCccee
Confidence            33444556777766666421           36789998775322  1  1233334566788999999988765 6899


Q ss_pred             EEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC------CeEEEEECCCCc
Q 018784          128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS------GGVRLWDARSGK  179 (350)
Q Consensus       128 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d------g~i~iwd~~~~~  179 (350)
                      +||..+..............-...+.. .++.+++.++.+      ..+.+||+.+.+
T Consensus       102 ~yd~~~~~w~~~~~~~~~r~~~~~~~~-~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         102 LYDSSSDSWIPGPDMQVARGYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EecCccCcccccccccccccccceeee-cCCceeeeccccccccccceeeeecCCCCc
Confidence            999764321110000011111123333 355666666532      368999988764

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.90  E-value=0.073  Score=42.89  Aligned_cols=220  Identities=5%  Similarity=-0.074  Sum_probs=131.2

Q ss_pred             ccCccCCeEEEEECCCCc-EEEEeeCCCeEEEeeCCCCCeeeeee-ccccEeEEEEcCCCCeEE-EeeCCCeEEEEECCC
Q 018784           57 FEGHKGAVWSCCLDANAL-FSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLL-TGGFEKILRIFDLNR  133 (350)
Q Consensus        57 l~gH~~~V~~v~~~~~~~-~l~s~s~Dg~v~vWd~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~-sg~~d~~v~vwd~~~  133 (350)
                      +..+...+.+++++.... +..+-..++.|+..++........+. ....+.++++..-+..|+ +-...+.|.+.++..
T Consensus        31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCC
Confidence            344445577888886654 44455667888888876554443332 235688999987555555 555678999999875


Q ss_pred             CCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEE--ECCCCceeEeec-CCCCeEEEEEecCCcEEEEE--cCC
Q 018784          134 PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW--DARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA--DGS  208 (350)
Q Consensus       134 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iw--d~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~~  208 (350)
                      ... ..........+..++..|..+.++.+-...+.-+|+  ++.......... .-.....+++++.+..|.-.  ..+
T Consensus       111 ~~~-~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~  189 (263)
T d1npea_         111 TQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTH  189 (263)
T ss_dssp             CSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             ceE-EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCC
Confidence            432 222233345688888888778777665443343444  554332222222 23456789998776655333  346


Q ss_pred             cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec-CCCcCEEEEEEc
Q 018784          209 SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK-GHHGPVHCVRFS  279 (350)
Q Consensus       209 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~-~h~~~v~~l~~s  279 (350)
                      .|...|+..............+..+.+.  .+.++.+-...+.|...|..+++.+..+. ........++..
T Consensus       190 ~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~  259 (263)
T d1npea_         190 RAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIA  259 (263)
T ss_dssp             EEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEE
T ss_pred             EEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEe
Confidence            7888888654432222222233344443  46777887788889999998887765543 222334455443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.66  E-value=0.16  Score=43.51  Aligned_cols=196  Identities=10%  Similarity=0.033  Sum_probs=121.1

Q ss_pred             EEEecccCCCccEEEEEe-CCCCeeEeeCCCCceeeeccC-ccCCeEEEEECC--CCcEEEEeeCC--------------
Q 018784           21 DLFYSPITPDGFFLVSAS-KDSSPMLRNGETGDWIGTFEG-HKGAVWSCCLDA--NALFSASGSAD--------------   82 (350)
Q Consensus        21 ~~~~~~~s~dg~~lasgs-~d~~v~iw~~~~~~~~~~l~g-H~~~V~~v~~~~--~~~~l~s~s~D--------------   82 (350)
                      .+.|-..++||++|.... .+..|-.-|+.+.++...++- -...+..++..+  +-.+++.++.+              
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            556666777999887766 456677788988888664432 234556666644  45566665553              


Q ss_pred             ----CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCC-----------------------------------
Q 018784           83 ----FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE-----------------------------------  123 (350)
Q Consensus        83 ----g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d-----------------------------------  123 (350)
                          +.+.+.|..+.+....+.-......++++++|+++++.+.+                                   
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~  248 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  248 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence                23567788877766666555567789999999999887643                                   


Q ss_pred             ---CeEEEEECCCC-CCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCc------------eeEeecCC
Q 018784          124 ---KILRIFDLNRP-DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK------------IVQTLETK  187 (350)
Q Consensus       124 ---~~v~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~------------~~~~~~~~  187 (350)
                         +.+.+-|..+. .......-........+..+|++..+++++.-+.++-++|++.-.            ...+.+..
T Consensus       249 ~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elg  328 (459)
T d1fwxa2         249 QELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG  328 (459)
T ss_dssp             EEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCC
T ss_pred             EEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccC
Confidence               11233343321 111110111112234566778888888899999999999986421            12222223


Q ss_pred             CCeEEEEEecCCcEEEEE-cCCcEEEEECC
Q 018784          188 SPVTSAEVSRDGRYITTA-DGSSVKFWDAN  216 (350)
Q Consensus       188 ~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~  216 (350)
                      -.-...+|+.+|.-.++- -|..|--|++.
T Consensus       329 lgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         329 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             SCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             cCccccccCCCceEEEEeeccceEEEEecc
Confidence            345667788888544333 47888899974

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.58  E-value=0.24  Score=44.48  Aligned_cols=58  Identities=17%  Similarity=0.259  Sum_probs=41.0

Q ss_pred             cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec
Q 018784          209 SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK  267 (350)
Q Consensus       209 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~  267 (350)
                      .+.-||+.+++.+..+..+.....-.+.- .+.++.+|+.|+.++.||..+|+.+=.+.
T Consensus       439 ~l~A~D~~tGk~~W~~~~~~~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~  496 (560)
T d1kv9a2         439 ALLAWDPVKQKAAWKVPYPTHWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (560)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEeCCCCeEeeeccCCCCCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEE
Confidence            56778888888777666554333222222 35677789999999999999999885543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.22  Score=39.97  Aligned_cols=218  Identities=9%  Similarity=-0.040  Sum_probs=129.3

Q ss_pred             eEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEe-eCCCeEEEEECCCCCC--CCe-eecCCCCcEEEEEEeCCCCc
Q 018784           84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG-GFEKILRIFDLNRPDA--PPR-EVGNSSGSIRTVAWLHSDQT  159 (350)
Q Consensus        84 ~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg-~~d~~v~vwd~~~~~~--~~~-~~~~~~~~v~~~~~~~~~~~  159 (350)
                      .|+..++.+......+.....+.+++|.+..+.|+-. ...+.|...++.....  ... ........+..+++....+.
T Consensus        11 ~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~   90 (266)
T d1ijqa1          11 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN   90 (266)
T ss_dssp             SEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE
T ss_pred             eEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccce
Confidence            4777787766544444555567899999877766544 4567777777653221  111 22222344556776666777


Q ss_pred             EEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCC-cEEEEEc--CCcEEEEECCCcceeeeeecC-CCCceeE
Q 018784          160 ILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDG-RYITTAD--GSSVKFWDANHFGLVKGYNMP-CNTESAS  234 (350)
Q Consensus       160 ~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~-~~l~~~~--~~~i~vwd~~~~~~~~~~~~~-~~~~~~~  234 (350)
                      +..+-...+.|.+.++........+.. ......+++.|.. .++.+..  ...|.-.++.......-.... ..+..+.
T Consensus        91 lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~  170 (266)
T d1ijqa1          91 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGIT  170 (266)
T ss_dssp             EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEE
T ss_pred             EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEE
Confidence            888877778999999876654333333 3557788998854 4444432  335665666443322211111 2234556


Q ss_pred             ecCCCCcEEEEecCCCeEEEEEcccCeeEEee--cCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCC
Q 018784          235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCN--KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPP  302 (350)
Q Consensus       235 ~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~--~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~  302 (350)
                      +.+..++++.+-...+.|...++.........  ........+|++. .+.++.+-..++.|+..+....
T Consensus       171 iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         171 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  239 (266)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             eeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCC
Confidence            66656678888788889999998654332222  2233446778876 4556667667788877765443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.02  E-value=0.5  Score=42.42  Aligned_cols=110  Identities=16%  Similarity=0.167  Sum_probs=60.2

Q ss_pred             cccCCCccEEEEEeCCCCeeEeeC-CCCceeeeccCc---cC-Ce-------EEEEECCCCcEEEEeeCCCeEEEeeCCC
Q 018784           25 SPITPDGFFLVSASKDSSPMLRNG-ETGDWIGTFEGH---KG-AV-------WSCCLDANALFSASGSADFTAKLWDALT   92 (350)
Q Consensus        25 ~~~s~dg~~lasgs~d~~v~iw~~-~~~~~~~~l~gH---~~-~V-------~~v~~~~~~~~l~s~s~Dg~v~vWd~~~   92 (350)
                      +|+--+|.+.++.+.++.+.-.|. ++|+.+..++--   .. ..       +.+++. ++ .++.++.||.+.--|..+
T Consensus        57 tP~v~~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~-~~-~i~~~~~~g~l~alda~t  134 (571)
T d2ad6a1          57 APLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG-AG-QIVKKQANGHLLALDAKT  134 (571)
T ss_dssp             CCEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE-TT-EEEEECTTSEEEEEETTT
T ss_pred             CCEEECCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee-CC-eEEEEeCCCcEEeeehhh
Confidence            344446666565555677777776 578888765310   00 00       122332 23 345567899999999999


Q ss_pred             CCeeeeeecc-----ccEeEEEEcCCCCeEEEee------CCCeEEEEECCCCCCC
Q 018784           93 GDEKHSFEHK-----HIVRACAFSEDTHLLLTGG------FEKILRIFDLNRPDAP  137 (350)
Q Consensus        93 ~~~~~~~~h~-----~~V~~~~~~~~~~~l~sg~------~d~~v~vwd~~~~~~~  137 (350)
                      ++........     ..+++--.-.++. ++.+.      ..+.|+-+|+.+++..
T Consensus       135 G~~~w~~~~~~~~~~~~~t~~p~v~~~~-vivg~~~~~~~~~G~v~a~D~~TG~~~  189 (571)
T d2ad6a1         135 GKINWEVEVCDPKVGSTLTQAPFVAKDT-VLMGCSGAELGVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEEETTE-EEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred             hhhhccccccccccccceeecCeEeCCe-EEEeeccccccccCcEEEEECCCCcEE
Confidence            9876654311     1111110111233 33333      3678999998876644

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.85  E-value=0.61  Score=42.06  Aligned_cols=68  Identities=16%  Similarity=0.122  Sum_probs=42.9

Q ss_pred             cEEEEEeCCCCeeEeeCCCCceeeeccC---ccC-CeEEEEECCCCcEEEEee-----CCCeEEEeeCCCCCeeeee
Q 018784           32 FFLVSASKDSSPMLRNGETGDWIGTFEG---HKG-AVWSCCLDANALFSASGS-----ADFTAKLWDALTGDEKHSF   99 (350)
Q Consensus        32 ~~lasgs~d~~v~iw~~~~~~~~~~l~g---H~~-~V~~v~~~~~~~~l~s~s-----~Dg~v~vWd~~~~~~~~~~   99 (350)
                      .++..++.|+.+.-.|.++|+.+..+..   +.. .+.+--.-.++.+++..+     ..|.|+-+|+.+++.+..+
T Consensus       122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~  198 (596)
T d1w6sa_         122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRA  198 (596)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             eEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEe
Confidence            3677888999988889999998876642   111 111000001334433222     3489999999999988765

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.83  E-value=0.62  Score=42.01  Aligned_cols=112  Identities=13%  Similarity=0.127  Sum_probs=64.2

Q ss_pred             ccCCCccEEEEEeCCCCeeEeeC-CCCceeeeccCcc----C------Ce-EEEEECC----CCcEEEEeeCCCeEEEee
Q 018784           26 PITPDGFFLVSASKDSSPMLRNG-ETGDWIGTFEGHK----G------AV-WSCCLDA----NALFSASGSADFTAKLWD   89 (350)
Q Consensus        26 ~~s~dg~~lasgs~d~~v~iw~~-~~~~~~~~l~gH~----~------~V-~~v~~~~----~~~~l~s~s~Dg~v~vWd   89 (350)
                      |+--+|.+.++.+.++.+...|. ++|+.+..+..-.    .      .+ +.+++-+    ....++.+..|+.|.-.|
T Consensus        58 Piv~~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Ald  137 (596)
T d1w6sa_          58 PLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALN  137 (596)
T ss_dssp             CEEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEE
T ss_pred             CEEECCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeec
Confidence            43346666666666677766675 6788877653110    0      01 2344422    234677788999999999


Q ss_pred             CCCCCeeeeeeccc--cEeEEEEcC--CCCeEEEeeC------CCeEEEEECCCCCCC
Q 018784           90 ALTGDEKHSFEHKH--IVRACAFSE--DTHLLLTGGF------EKILRIFDLNRPDAP  137 (350)
Q Consensus        90 ~~~~~~~~~~~h~~--~V~~~~~~~--~~~~l~sg~~------d~~v~vwd~~~~~~~  137 (350)
                      ..+++....+....  .-..+.-.|  .+..++.|..      .|.|+-+|+.+++..
T Consensus       138 a~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~  195 (596)
T d1w6sa_         138 AETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQV  195 (596)
T ss_dssp             TTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred             cccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEE
Confidence            99999877663211  000011111  1334555432      488999998877654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.82  E-value=0.36  Score=39.17  Aligned_cols=246  Identities=10%  Similarity=0.101  Sum_probs=137.2

Q ss_pred             CCeeEeeCCCCce-ee-eccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEE
Q 018784           41 SSPMLRNGETGDW-IG-TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL  118 (350)
Q Consensus        41 ~~v~iw~~~~~~~-~~-~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~  118 (350)
                      .++.|-|+.+... .+ .+.     .-+.-++|....+|--+ ..+++++|+++.+.+..+.-+..|.--.|-.+..+-+
T Consensus        45 ~~VvIidl~n~~~~~Rrpi~-----AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~~L~l  118 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPIS-----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVAL  118 (327)
T ss_dssp             EEEEEEETTSTTSCEEEECC-----CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEESSSSEEEE
T ss_pred             ceEEEEECCCCCcceecccc-----hhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCCcEEEEecCCCEEEE
Confidence            3566677655432 21 121     12344678877776544 5689999999988887777777777667765544333


Q ss_pred             EeeCCCeEEEEECCCCCCCCeeecCC----CCcEEEEEEeCCCCcEEEEE--eC----CCeEEEEECCCCceeEeecCCC
Q 018784          119 TGGFEKILRIFDLNRPDAPPREVGNS----SGSIRTVAWLHSDQTILSSC--TD----SGGVRLWDARSGKIVQTLETKS  188 (350)
Q Consensus       119 sg~~d~~v~vwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~s~--~~----dg~i~iwd~~~~~~~~~~~~~~  188 (350)
                      . . +..|.-|+++....+.+....|    ...|......++...+++.|  ..    .|.+.+|..+.+.. +.++++.
T Consensus       119 V-T-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~s-Q~ieGha  195 (327)
T d1utca2         119 V-T-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHA  195 (327)
T ss_dssp             E-C-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEE-EEECCSE
T ss_pred             E-c-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcC-cccccee
Confidence            2 2 4468899986555444433222    24555555555555554443  11    26788888765432 3333332


Q ss_pred             Ce-EEEEEe--cC-CcEEEEE----cCCcEEEEECCCcce------eee--eecCC-----CCceeEecCCCCcEEEEec
Q 018784          189 PV-TSAEVS--RD-GRYITTA----DGSSVKFWDANHFGL------VKG--YNMPC-----NTESASLEPKLGNIFIAGG  247 (350)
Q Consensus       189 ~v-~~~~~~--~~-~~~l~~~----~~~~i~vwd~~~~~~------~~~--~~~~~-----~~~~~~~~~~~~~~l~sg~  247 (350)
                      .. ..+.+.  ++ ..+++-+    .++.+++.++.+...      .+.  ..++.     .+.....+.+. .++..-+
T Consensus       196 a~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~ky-giiyviT  274 (327)
T d1utca2         196 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLIT  274 (327)
T ss_dssp             EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTT-TEEEEEE
T ss_pred             eeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccC-CEEEEEe
Confidence            11 111111  11 1222222    235788888765211      111  11111     12233444443 3455556


Q ss_pred             CCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEE
Q 018784          248 EDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRI  296 (350)
Q Consensus       248 ~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~v  296 (350)
                      .-|.|++||+.++.++..-+--..+|...+-.....-++.-..+|.|..
T Consensus       275 K~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         275 KYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             cCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence            7899999999999998877666777776666655555555566776643

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.37  E-value=0.88  Score=40.69  Aligned_cols=58  Identities=17%  Similarity=0.203  Sum_probs=38.7

Q ss_pred             cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec
Q 018784          209 SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK  267 (350)
Q Consensus       209 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~  267 (350)
                      .+.-||+.+++.+-.+........-.+. ..+.++.+|+.|+.++.||..+|+.+-.+.
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg~ls-tagglVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGGTLT-TAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCceEE-EcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence            4666777777766655543322211121 136788889999999999999999985543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.26  E-value=0.25  Score=44.50  Aligned_cols=58  Identities=12%  Similarity=0.141  Sum_probs=38.4

Q ss_pred             CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee
Q 018784           83 FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE  140 (350)
Q Consensus        83 g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~  140 (350)
                      |.+.-||+.+++.+...........=.++-.+.++++|+.|+.++.+|.++++...+.
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~  514 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEA  514 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEE
Confidence            3566777777777766654332221122335677888999999999999988765443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=94.11  E-value=0.19  Score=45.17  Aligned_cols=58  Identities=10%  Similarity=0.112  Sum_probs=40.7

Q ss_pred             CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee
Q 018784           83 FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE  140 (350)
Q Consensus        83 g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~  140 (350)
                      |.+.-||+.+++.+..........+=.+.-.+.+++.|+.|+.++.+|..+++.....
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~  495 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF  495 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEE
Confidence            5677888888888777654433332223334667888999999999999988765443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=1.2  Score=35.24  Aligned_cols=223  Identities=6%  Similarity=-0.136  Sum_probs=125.8

Q ss_pred             CCeeEeeCCCCceeeeccCccCCeEEEEECCCCcE-EEEeeCCCeEEEeeCCCCC---eee-eee-ccccEeEEEEcCCC
Q 018784           41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF-SASGSADFTAKLWDALTGD---EKH-SFE-HKHIVRACAFSEDT  114 (350)
Q Consensus        41 ~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~-l~s~s~Dg~v~vWd~~~~~---~~~-~~~-h~~~V~~~~~~~~~  114 (350)
                      ..|+..++.+.+....+. ....+.+++++..... ..+=..++.|+--++....   ... .+. ....+..+++.+.+
T Consensus        10 ~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~   88 (266)
T d1ijqa1          10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH   88 (266)
T ss_dssp             SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred             CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeecc
Confidence            357777777655443333 3455678888876554 4444456777666553211   111 122 22456788888755


Q ss_pred             CeEEE-eeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe-CCCeEEEEECCCCceeEeecC-CCCeE
Q 018784          115 HLLLT-GGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT-DSGGVRLWDARSGKIVQTLET-KSPVT  191 (350)
Q Consensus       115 ~~l~s-g~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-~dg~i~iwd~~~~~~~~~~~~-~~~v~  191 (350)
                      ..|+- -...+.|.+.++..... .............++..+..+.++.+.. ..+.|.-.++........... -...+
T Consensus        89 ~~lY~~d~~~~~I~v~~~~g~~~-~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~  167 (266)
T d1ijqa1          89 SNIYWTDSVLGTVSVADTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN  167 (266)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred             ceEEEEecCCCEEEeEecCCceE-EEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceee
Confidence            55554 45668899999875332 2233334456788888777777776643 334566666654433322222 24567


Q ss_pred             EEEEecCCcEEEEE--cCCcEEEEECCCcceeeeeecCC---CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEee
Q 018784          192 SAEVSRDGRYITTA--DGSSVKFWDANHFGLVKGYNMPC---NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCN  266 (350)
Q Consensus       192 ~~~~~~~~~~l~~~--~~~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~  266 (350)
                      .+++++.+..|.-.  ..+.|...|+.............   .+..+.+.  .+.++.+-..++.|+..+..++.....+
T Consensus       168 gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~  245 (266)
T d1ijqa1         168 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEE
Confidence            89999876554433  34678888876543322222211   12233333  3567777777778888777776554444


Q ss_pred             c
Q 018784          267 K  267 (350)
Q Consensus       267 ~  267 (350)
                      .
T Consensus       246 ~  246 (266)
T d1ijqa1         246 A  246 (266)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.06  E-value=0.42  Score=43.01  Aligned_cols=77  Identities=13%  Similarity=0.157  Sum_probs=48.8

Q ss_pred             CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCc
Q 018784           83 FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT  159 (350)
Q Consensus        83 g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  159 (350)
                      |.|.-+|+.+++.+........+.+=.++-.+.++++|+.|+.++.+|.++++...+........-.-+.|..++..
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q  542 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            67888888888888776544433322233456788889999999999999887665443322222222444444433

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.58  E-value=3.5  Score=34.95  Aligned_cols=56  Identities=18%  Similarity=0.162  Sum_probs=37.0

Q ss_pred             CeEEEEECCCCcEEE-EeeCC----CeEEEeeCCCCCeeee-eeccccEeEEEEcCCCCeEEE
Q 018784           63 AVWSCCLDANALFSA-SGSAD----FTAKLWDALTGDEKHS-FEHKHIVRACAFSEDTHLLLT  119 (350)
Q Consensus        63 ~V~~v~~~~~~~~l~-s~s~D----g~v~vWd~~~~~~~~~-~~h~~~V~~~~~~~~~~~l~s  119 (350)
                      .+...+++|+++++| +-+..    ..+++.|+.+++.+.. +.. .....++|.++++.|+-
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~-~~~~~~~W~~D~~~~~Y  187 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFY  187 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEE
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc-ccccceEEcCCCCEEEE
Confidence            345667899998776 32223    5699999999975542 222 11256789999987753

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.71  E-value=3.6  Score=32.09  Aligned_cols=52  Identities=23%  Similarity=0.256  Sum_probs=27.0

Q ss_pred             cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCC-----eEEEEEcccC
Q 018784          209 SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM-----WVHVFDFHTG  260 (350)
Q Consensus       209 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~-----~i~v~d~~~~  260 (350)
                      ....+|..+......-..+...........++++++.|+.++     .|.+||+.+.
T Consensus       212 ~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~  268 (288)
T d1zgka1         212 SVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD  268 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             ceeeeeecceeeecccCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCC
Confidence            467777766543322222222221122222478888887654     3677887653

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=89.59  E-value=4.7  Score=33.22  Aligned_cols=202  Identities=12%  Similarity=0.189  Sum_probs=112.4

Q ss_pred             eEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEEC------CCCcEEEEee--CCC--eEEEee
Q 018784           20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLD------ANALFSASGS--ADF--TAKLWD   89 (350)
Q Consensus        20 ~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~------~~~~~l~s~s--~Dg--~v~vWd   89 (350)
                      -+++++|..|+..+++.....+-+.+||++ |+.+..+..  +.++.|.+-      .....++.++  .++  +|.+|.
T Consensus        29 PAIW~n~~~p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~--Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~  105 (353)
T d1h6la_          29 PAIWLDPKNPQNSKLITTNKKSGLAVYSLE-GKMLHSYHT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYA  105 (353)
T ss_dssp             EEEECCSSCGGGCEEEEEETTSCCEEEETT-CCEEEECCS--SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEE
T ss_pred             ceEEcCCCCcCccEEEEEcCcCCEEEEcCC-CcEEEeccc--CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEE
Confidence            467788877887888877777779999984 888877753  556655542      2222333333  333  678887


Q ss_pred             CCC-CCeeeeee--------ccccEeEEEE--cCC-CC-eEEEeeCCCeEEEEECCCCCCC-----CeeecCCCCcEEEE
Q 018784           90 ALT-GDEKHSFE--------HKHIVRACAF--SED-TH-LLLTGGFEKILRIFDLNRPDAP-----PREVGNSSGSIRTV  151 (350)
Q Consensus        90 ~~~-~~~~~~~~--------h~~~V~~~~~--~~~-~~-~l~sg~~d~~v~vwd~~~~~~~-----~~~~~~~~~~v~~~  151 (350)
                      +.. ......+.        -...++.+++  ++. +. +++....++.+..|.+......     ..........+..|
T Consensus       106 id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGC  185 (353)
T d1h6la_         106 IDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGM  185 (353)
T ss_dssp             EETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEE
T ss_pred             ecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceE
Confidence            642 22222221        1123666666  554 43 4566777899998876422111     11112234567778


Q ss_pred             EEeCCCCcEEEEEeCCCeEEEEECCC--C---ceeEeecC---CCCeEEEEEec----CCcEEEEEc-CCcEEEEECCC-
Q 018784          152 AWLHSDQTILSSCTDSGGVRLWDARS--G---KIVQTLET---KSPVTSAEVSR----DGRYITTAD-GSSVKFWDANH-  217 (350)
Q Consensus       152 ~~~~~~~~~~~s~~~dg~i~iwd~~~--~---~~~~~~~~---~~~v~~~~~~~----~~~~l~~~~-~~~i~vwd~~~-  217 (350)
                      .+.+..+.++++ -++..|..++...  .   ..+.....   ...+..+++-.    +|.+++++. +.+..+||... 
T Consensus       186 VvDde~~~Lyis-EE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         186 AADDEYGSLYIA-EEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EEETTTTEEEEE-ETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             EEeCCCCcEEEe-cCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            777665666654 5555555555431  1   22222211   24566666543    234444443 46899999865 


Q ss_pred             cceeeeee
Q 018784          218 FGLVKGYN  225 (350)
Q Consensus       218 ~~~~~~~~  225 (350)
                      +..+-.+.
T Consensus       265 ~~~~g~F~  272 (353)
T d1h6la_         265 NKYVADFQ  272 (353)
T ss_dssp             CCEEEEEE
T ss_pred             ccccceEE
Confidence            34444443

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.02  E-value=5.5  Score=30.94  Aligned_cols=92  Identities=18%  Similarity=0.164  Sum_probs=43.2

Q ss_pred             CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCC-----CeEEEEEcccCeeEEeecCCCcCE-EEEEEcCC
Q 018784          208 SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED-----MWVHVFDFHTGEQIGCNKGHHGPV-HCVRFSPG  281 (350)
Q Consensus       208 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-----~~i~v~d~~~~~~~~~~~~h~~~v-~~l~~sp~  281 (350)
                      ..+..||..+.........+............+.+++.|+.+     .....||..+.+............ .+++. -+
T Consensus       164 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~  242 (288)
T d1zgka1         164 NSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQ  242 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ET
T ss_pred             ceEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEE-EC
Confidence            357888876654332211111111111112235677777654     345677776554332211111111 22333 26


Q ss_pred             CCEEEEecCCCc-----EEEecCC
Q 018784          282 GESYASGSEDGT-----IRIWQTN  300 (350)
Q Consensus       282 ~~~lasgs~Dg~-----v~vw~~~  300 (350)
                      +++++.|+.++.     |.+||..
T Consensus       243 ~~l~v~GG~~~~~~~~~v~~yd~~  266 (288)
T d1zgka1         243 GRIYVLGGYDGHTFLDSVECYDPD  266 (288)
T ss_dssp             TEEEEECCBCSSCBCCEEEEEETT
T ss_pred             CEEEEEecCCCCeecceEEEEECC
Confidence            778888876543     5566654

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=86.96  E-value=7.1  Score=32.10  Aligned_cols=151  Identities=9%  Similarity=0.134  Sum_probs=91.5

Q ss_pred             EEEEEeC--CC--CeeEeeCC-CCceeeeccCcc-------CCeEEEEE--CCC-Cc-EEEEeeCCCeEEEeeCCC---C
Q 018784           33 FLVSASK--DS--SPMLRNGE-TGDWIGTFEGHK-------GAVWSCCL--DAN-AL-FSASGSADFTAKLWDALT---G   93 (350)
Q Consensus        33 ~lasgs~--d~--~v~iw~~~-~~~~~~~l~gH~-------~~V~~v~~--~~~-~~-~l~s~s~Dg~v~vWd~~~---~   93 (350)
                      .+|.+|.  ++  ++.+|... ....+..+....       ..++.+|+  ++. +. +++....+|.+..|.+..   +
T Consensus        87 di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g  166 (353)
T d1h6la_          87 DIAAASNRSEGKNTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNG  166 (353)
T ss_dssp             EEEEEEECCTTTCEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS
T ss_pred             EEEEEeCCcCcceeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCC
Confidence            3555553  23  46667653 223333343211       24667777  554 43 566778899999997632   2


Q ss_pred             C----eeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCC-Ceee-----cCCCCcEEEEEEeC---CCCcE
Q 018784           94 D----EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP-PREV-----GNSSGSIRTVAWLH---SDQTI  160 (350)
Q Consensus        94 ~----~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~-~~~~-----~~~~~~v~~~~~~~---~~~~~  160 (350)
                      .    .+..+.-...+..|.+.+....|+.+-.+..+..++.+..... ....     ....+-+..++...   .++.+
T Consensus       167 ~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~Gyl  246 (353)
T d1h6la_         167 YISGKKVRAFKMNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYL  246 (353)
T ss_dssp             SEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEE
T ss_pred             ceeeEeeeccCCCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEE
Confidence            2    2334556678999999999889999988877766665422111 1111     12345566666543   24578


Q ss_pred             EEEEeCCCeEEEEECCCC-ceeEe
Q 018784          161 LSSCTDSGGVRLWDARSG-KIVQT  183 (350)
Q Consensus       161 ~~s~~~dg~i~iwd~~~~-~~~~~  183 (350)
                      ++|.-.+++..+||.++. +.+..
T Consensus       247 ivSsQG~n~f~vydr~~~~~~~g~  270 (353)
T d1h6la_         247 LASSQGNSSYAIYERQGQNKYVAD  270 (353)
T ss_dssp             EEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             EEEcCCCCeEEEEecCCCccccce
Confidence            888888899999997653 44433

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=81.02  E-value=13  Score=30.26  Aligned_cols=176  Identities=13%  Similarity=0.154  Sum_probs=90.0

Q ss_pred             EEECCCCcEEEEeeC------------CCeEEEeeCCCCCeee-eeecc--------ccEeEEEE--cCCCC-eEEEe--
Q 018784           67 CCLDANALFSASGSA------------DFTAKLWDALTGDEKH-SFEHK--------HIVRACAF--SEDTH-LLLTG--  120 (350)
Q Consensus        67 v~~~~~~~~l~s~s~------------Dg~v~vWd~~~~~~~~-~~~h~--------~~V~~~~~--~~~~~-~l~sg--  120 (350)
                      +.+.+++..+++++.            .|.|.++|+.+..... .+...        -....+.+  .++++ +|++.  
T Consensus        40 i~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH  119 (340)
T d1v04a_          40 LEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNH  119 (340)
T ss_dssp             EEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEEC
T ss_pred             EEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEec
Confidence            455677766655432            4888888876544221 11110        12344443  44554 34443  


Q ss_pred             -eCCCeEEEEECCCCCCCCeee----cCCCCcEEEEEEeCCCCcEEEEEe-----------------CCCeEEEEECCCC
Q 018784          121 -GFEKILRIFDLNRPDAPPREV----GNSSGSIRTVAWLHSDQTILSSCT-----------------DSGGVRLWDARSG  178 (350)
Q Consensus       121 -~~d~~v~vwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~s~~-----------------~dg~i~iwd~~~~  178 (350)
                       ....+|.+|++..........    .........++...+ +.++++-.                 .-+.+..||.  +
T Consensus       120 ~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~-g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~--~  196 (340)
T d1v04a_         120 PGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGP-EHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--N  196 (340)
T ss_dssp             STTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEET-TEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS--S
T ss_pred             cCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecC-CCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC--C
Confidence             346788888875433221111    122344667776654 44666521                 1123444544  3


Q ss_pred             ceeEeecCCCCeEEEEEecCCcEEEEE--cCCcEEEEECCCcce---eeeeecCCCCceeEecCCCCcEEEE
Q 018784          179 KIVQTLETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANHFGL---VKGYNMPCNTESASLEPKLGNIFIA  245 (350)
Q Consensus       179 ~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~s  245 (350)
                      +.......-...+.++++|+++++..+  ..+.|+.|++.....   .....++..+..+.+.+..+.+.+.
T Consensus       197 ~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         197 DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             CEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             ceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence            332223333457889999999877555  356899888764332   2223344444444444444444444

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.91  E-value=17  Score=31.82  Aligned_cols=63  Identities=21%  Similarity=0.236  Sum_probs=46.8

Q ss_pred             CCeEEEEECCCCceeEeecCCCCeEEEEEecCC-cEEEEEcCCcEEEEECCCcceeeeeecCCC
Q 018784          167 SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDG-RYITTADGSSVKFWDANHFGLVKGYNMPCN  229 (350)
Q Consensus       167 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~  229 (350)
                      .|.|.-+|+.+|+.+.+.....++..-.++..+ ..++...|+.++.+|.++++.+..+..+..
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~  528 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG  528 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCC
Confidence            367999999999998888766555433334444 444555689999999999999998887654