Citrus Sinensis ID: 018790

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
MSSSSSSAFGFREAEPDGKQFYSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSWQGFDAIPEALEVLKEEGLRENFNINGCTNSGNVLNDNENEGSTCTVTDGQDSSSSKIESKREKSLWLLTQNFVKLFLCSDVDMITLDSAAMALLGDSNNSTAMRKSRKPAFRWLGWKGNPCNRSAGFLDLNEPKKRVFGTDITNLRLKKNKVDSLTEKKSNPKLNVPKYFKHCNEESNPDESRLEQHSKHKSKGFVYGPFTPASISGIHDSRSKNTKQVLDFASLASTFRPKYHNEAVNGLFGHYVEAWKSWYAEVGDKEQKT
ccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccEEcHHHHHHHHccccEEEEEHHHHHHHHccEEEcccccEEEEccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEEcccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccc
cccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccEcHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccEEccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHEcccccEEcHHHHHHHHHccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
mssssssafgfreaepdgkqfysrkEKSLGLLCSKFLKLynrdgvesiglddaasrlgverrRIYDVVNILESIGVVARQAKNLyswqgfdaIPEALEVLKEeglrenfningctnsgnvlndnenegstctvtdgqdsssskiesKREKSLWLLTQNFVKLFLCSDVDMITLDSAAMALlgdsnnstamrksrkpafrwlgwkgnpcnrsagfldlnepkkrvfgtditnlrlkknkvdsltekksnpklnvpkyfkhcneesnpdesrleqhskhkskgfvygpftpasisgihdsrskntKQVLDFASlastfrpkyhneavNGLFGHYVEAWKSWYAevgdkeqkt
mssssssafgfreaepdgkqfysrkeKSLGLLCSKFLKLynrdgvesiglddaasrlgverrRIYDVVNILESIGVVARQAKNLYSWQGFDAIPEALEVLKEEGLRENFNINGCTNSGNVLNDNENEGStctvtdgqdsssskiesKREKSLWLLTQNFVKLFLCSDVDMITLDSAAMALLgdsnnstamrKSRKPAFRWLGWKGNPCNRsagfldlnepkkrvfgtditnlrlkknkvdsltekksnpklnvpkyfKHCNEESNPDESRLEQHSKHKSKGFVYGPFTPASISGIHDSRSKNTKQVLDFASLASTFRPKYHNEAVNGLFGHYVEAWKSWYAEVGDKEQKT
MssssssAFGFREAEPDGKQFYSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSWQGFDAIPEALEVLKEEGLRENFNINGCTNSGNVLNDNENEGSTCTVTDGQDsssskieskreksLWLLTQNFVKLFLCSDVDMITLDSAAMALLGDSNNSTAMRKSRKPAFRWLGWKGNPCNRSAGFLDLNEPKKRVFGTDITNLRLKKNKVDSLTEKKSNPKLNVPKYFKHCNEESNPDESRLEQHSKHKSKGFVYGPFTPASISGIHDSRSKNTKQVLDFASLASTFRPKYHNEAVNGLFGHYVEAWKSWYAEVGDKEQKT
***************************SLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSWQGFDAIPEALEVLKEEGLRENFNINGCTN**********************************SLWLLTQNFVKLFLCSDVDMITLDSAAMALLG**************AFRWLGWKGNPCNRSAGFLDLNEPKKRVFGTDITNLRL***********************************************FVYGPF*****************QVLDFASLASTFRPKYHNEAVNGLFGHYVEAWKSWYAEV*******
******************************LLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSWQGFDAIPEAL**********************VLN*NENEGSTCTVTDG***************LWLLTQNFVKLFLCSDVDMITLDSAA*************************************************************************************************************************************SLASTFRPKYHNEAVNGLFGHYVEAWKSWYA**GD*****
****************DGKQFYSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSWQGFDAIPEALEVLKEEGLRENFNINGCTNSGNVLNDNENE*********************EKSLWLLTQNFVKLFLCSDVDMITLDSAAMALLGDSNNSTAMRKSRKPAFRWLGWKGNPCNRSAGFLDLNEPKKRVFGTDITNLRLKKNKVDSLTEKKSNPKLNVPKYFKHCN****************KSKGFVYGPFTPASISGIHDSRSKNTKQVLDFASLASTFRPKYHNEAVNGLFGHYVEAWKSWYAEVGDKEQKT
*********************YSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSWQGFDAIPEALEVLKEEGLRENFN*NGC**********************************EKSLWLLTQNFVKLFLCSDVDMITLDSAAMALLGDSNNSTAMRKSRKPAFRWLGWK***************************************************************************************************KQVLDFASLASTFRPKYHNEAVNGLFGHYVEAWKSWYAEVGD*****
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MSSSSSSAFGFREAEPDGKQFYSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSWQGFDAIPEALEVLKEEGLRENFNINGCTNSGNVLNDNENEGSTCTVTDGQDSSSSKIESKREKSLWLLTQNFVKLFLCSDVDMITLDSAAMALLGDSNNSTAMRKSRKPAFRWLGWKGNPCNRSAGFLDLNEPKKRVFGTDITNLRLKKNKVDSLTEKKSNPKLNVPKYFKHCNEESNPDESRLEQHSKHKSKGFVYGPFTPASISGIHDSRSKNTKQVLDFASLASTFRPKYHNEAVNGLFGHYVEAWKSWYAEVGDKEQKT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query350 2.2.26 [Sep-21-2011]
Q8RWL0354 E2F transcription factor- yes no 0.911 0.901 0.501 3e-86
Q8LSZ4403 E2F transcription factor- no no 0.9 0.781 0.434 2e-75
Q9LFQ9359 E2F transcription factor- no no 0.888 0.866 0.433 8e-64
Q5RIX9 723 Transcription factor E2F7 yes no 0.511 0.247 0.373 3e-29
E1BE02 911 Transcription factor E2F7 yes no 0.582 0.223 0.338 5e-28
Q6S7F2 904 Transcription factor E2F7 yes no 0.514 0.199 0.348 3e-27
F1QZ88 917 Transcription factor E2F8 no no 0.545 0.208 0.350 3e-27
F6YVB9 862 Transcription factor E2F7 yes no 0.508 0.206 0.359 5e-27
Q96AV8 911 Transcription factor E2F7 yes no 0.525 0.201 0.346 9e-27
D4A4D7 902 Transcription factor E2F7 yes no 0.525 0.203 0.346 2e-26
>sp|Q8RWL0|E2FF_ARATH E2F transcription factor-like E2FF OS=Arabidopsis thaliana GN=E2FF PE=2 SV=1 Back     alignment and function desciption
 Score =  319 bits (817), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 185/369 (50%), Positives = 231/369 (62%), Gaps = 50/369 (13%)

Query: 5   SSSAFGFREAEPDGKQFYSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRI 64
           SS+    ++AE  G Q YSRKEKSLG+L S FL+LYNRD V+ IGLDDAA +LGVERRRI
Sbjct: 2   SSAIVVSQDAESLGLQIYSRKEKSLGVLVSNFLRLYNRDDVDLIGLDDAAGQLGVERRRI 61

Query: 65  YDVVNILESIGVVARQAKNLYSWQGFDAIPEALEVLKEEGLRENFNINGCTNSGNVLNDN 124
           YDVVNILESIG+VAR+ KN YSW+GF  IP +L+ LKEEG+RE    +   NS  V N  
Sbjct: 62  YDVVNILESIGIVARRGKNQYSWKGFGEIPRSLDELKEEGMRERLGYSSSNNSDKVSNGC 121

Query: 125 ENEGS-TCTVTDGQDSSSSKIESKREKSLWLLTQNFVKLFLCSDVDMITLDSAAMALLGD 183
           E E   T T  D ++SSSSK++ K+EKSLWLL QNFVK+FLCSD D+ITLDSAA ALL D
Sbjct: 122 EREEPLTLTPDDQENSSSSKMDQKKEKSLWLLAQNFVKMFLCSDDDLITLDSAAKALLSD 181

Query: 184 SNNSTAMRK-------------------------SRKPAFRWLGWKGNPCNRSAGFLDLN 218
           S +S  MR                          +RKPA+RWLG K +   R     +  
Sbjct: 182 SPDSVHMRTKVRRLYDIANVFASMNLIEKTHIPVTRKPAYRWLGSK-SIAERGLSLFNSG 240

Query: 219 EPKKRVFGTDITNLRLKKNKVDSLTEKKSNPKLNVPKYFKHCNEESNPDESRLEQHSKHK 278
           EP KRVFGT+ITNLR K+NK    + +K         Y KH       DE   EQ SK  
Sbjct: 241 EP-KRVFGTEITNLRAKRNKTYCSSIRKQ------IGYKKH-------DEENTEQESKPA 286

Query: 279 SKGFVYGPFTPASISGIHDSRSKNTK----QVLDFASLASTFRPKYHNEAVNGLFGHYVE 334
           +  +V+GPF+P     I  S++ N K    ++L+  +LAST++P+Y N+ + GL GH+ E
Sbjct: 287 ASKYVFGPFSP-----IGASKTNNDKVGKGRLLEIEALASTYQPQYCNQEITGLLGHFTE 341

Query: 335 AWKSWYAEV 343
           AWK WYAEV
Sbjct: 342 AWKKWYAEV 350
Inhibitor of E2F-dependent activation of gene expression. Binds specifically the E2 recognition site without interacting with DP proteins and prevents transcription activation by E2F/DP heterodimers. Does not bind retinoblastoma-related proteins. Acts as a growth regulator but is not associated with changes in the expression of cell cycle marker genes or in nuclear ploidy levels. Has no effect on cell proliferation, but may repress cell wall biosynthesis genes during cell elongation in differentiated cells.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8LSZ4|E2FE_ARATH E2F transcription factor-like E2FE OS=Arabidopsis thaliana GN=E2FE PE=2 SV=1 Back     alignment and function description
>sp|Q9LFQ9|E2FD_ARATH E2F transcription factor-like E2FD OS=Arabidopsis thaliana GN=E2FD PE=1 SV=1 Back     alignment and function description
>sp|Q5RIX9|E2F7_DANRE Transcription factor E2F7 OS=Danio rerio GN=e2f7 PE=3 SV=2 Back     alignment and function description
>sp|E1BE02|E2F7_BOVIN Transcription factor E2F7 OS=Bos taurus GN=E2F7 PE=3 SV=1 Back     alignment and function description
>sp|Q6S7F2|E2F7_MOUSE Transcription factor E2F7 OS=Mus musculus GN=E2f7 PE=1 SV=1 Back     alignment and function description
>sp|F1QZ88|E2F8_DANRE Transcription factor E2F8 OS=Danio rerio GN=e2f8 PE=2 SV=1 Back     alignment and function description
>sp|F6YVB9|E2F7_XENTR Transcription factor E2F7 OS=Xenopus tropicalis GN=e2f7 PE=3 SV=1 Back     alignment and function description
>sp|Q96AV8|E2F7_HUMAN Transcription factor E2F7 OS=Homo sapiens GN=E2F7 PE=1 SV=3 Back     alignment and function description
>sp|D4A4D7|E2F7_RAT Transcription factor E2F7 OS=Rattus norvegicus GN=E2f7 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query350
225452644372 PREDICTED: E2F transcription factor-like 0.971 0.913 0.604 1e-117
255552752328 E2F, putative [Ricinus communis] gi|2235 0.911 0.972 0.562 4e-99
225457156382 PREDICTED: E2F transcription factor-like 0.911 0.835 0.512 1e-86
297733848 815 unnamed protein product [Vitis vinifera] 0.908 0.390 0.524 9e-86
449487782381 PREDICTED: E2F transcription factor-like 0.92 0.845 0.490 1e-84
22330789354 DP-E2F-like protein 3 [Arabidopsis thali 0.911 0.901 0.501 2e-84
356562773380 PREDICTED: E2F transcription factor-like 0.925 0.852 0.469 2e-83
449469501381 PREDICTED: E2F transcription factor-like 0.92 0.845 0.481 2e-81
255540801389 E2F, putative [Ricinus communis] gi|2235 0.922 0.830 0.467 2e-81
356512910381 PREDICTED: E2F transcription factor-like 0.925 0.850 0.457 3e-81
>gi|225452644|ref|XP_002281897.1| PREDICTED: E2F transcription factor-like E2FE [Vitis vinifera] gi|296087763|emb|CBI35019.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/369 (60%), Positives = 272/369 (73%), Gaps = 29/369 (7%)

Query: 7   SAFGFREAEPDGKQFYSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66
           S+F  RE +P  + FYSRKEKSLGLLC+ FL LY+R+ VESIGLDDAASRLGVERRRIYD
Sbjct: 2   SSFVSRENDPKAQYFYSRKEKSLGLLCTNFLSLYDREDVESIGLDDAASRLGVERRRIYD 61

Query: 67  VVNILESIGVVARQAKNLYSWQGFDAIPEALEVLKEEGLRENFNINGCTNSGNVLNDNEN 126
           +VNILES+G++AR+AKN YSW+GF AIP ALE LKEEGLRENF+I+ C N    L+D E 
Sbjct: 62  IVNILESVGILARKAKNQYSWKGFGAIPRALEELKEEGLRENFSISDCCNFAKSLDDIEE 121

Query: 127 EGSTCTVTDGQDSSS--SKIESKREKSLWLLTQNFVKLFLCSDVDMITLDSAAMALLGDS 184
            GS+ + +DGQD SS  SK +++REKSL LLT+NF+KLFLCSD D+I+LD AAMALLGD 
Sbjct: 122 GGSSNSKSDGQDRSSGLSKNDNRREKSLGLLTRNFIKLFLCSDADLISLDCAAMALLGDG 181

Query: 185 NNSTAMR-------------------------KSRKPAFRWLGWKGNPCNRSAGFLDLNE 219
           +NSTAMR                         +SRKPAFRWLG KG   N SA  +D+ +
Sbjct: 182 HNSTAMRTKVRRLYDIANVLSSMNLIEKTPHPESRKPAFRWLGVKGKLKNASATAMDVQQ 241

Query: 220 PKKRVFGTDITNLRLKKNKVDSLTEKKSNPKLNVPKYFKHCNEESNPDESRLEQHSKHKS 279
           PKKRVFGTD+TN  LK+NK DS T+ KSN  +N+P + K  + E+N D   LEQ+SKH S
Sbjct: 242 PKKRVFGTDVTNYSLKRNKADSSTDWKSNQNINMPLHMKPDDLENNGDG--LEQNSKHSS 299

Query: 280 KGFVYGPFTPASISGIHDSRSKNTKQVLDFASLASTFRPKYHNEAVNGLFGHYVEAWKSW 339
           KGFV+GPFTPAS  G+ +S +K  K   D+ SLASTFRP+Y N+A++ LFGHYVEAWKSW
Sbjct: 300 KGFVFGPFTPASAPGVGESANKIMKPTQDWESLASTFRPQYRNQAISDLFGHYVEAWKSW 359

Query: 340 YAEVGDKEQ 348
           Y EV  K+Q
Sbjct: 360 YVEVAGKKQ 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255552752|ref|XP_002517419.1| E2F, putative [Ricinus communis] gi|223543430|gb|EEF44961.1| E2F, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225457156|ref|XP_002280411.1| PREDICTED: E2F transcription factor-like E2FE-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297733848|emb|CBI15095.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449487782|ref|XP_004157798.1| PREDICTED: E2F transcription factor-like E2FE-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|22330789|ref|NP_186782.2| DP-E2F-like protein 3 [Arabidopsis thaliana] gi|75303239|sp|Q8RWL0.1|E2FF_ARATH RecName: Full=E2F transcription factor-like E2FF; AltName: Full=DP-E2F-like protein 3; AltName: Full=E2F-like repressor E2L2 gi|20260250|gb|AAM13023.1| unknown protein [Arabidopsis thaliana] gi|20502506|dbj|BAB91413.1| E2F-like repressor E2L2 [Arabidopsis thaliana] gi|23198408|gb|AAN15731.1| unknown protein [Arabidopsis thaliana] gi|332640129|gb|AEE73650.1| DP-E2F-like protein 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356562773|ref|XP_003549643.1| PREDICTED: E2F transcription factor-like E2FE-like [Glycine max] Back     alignment and taxonomy information
>gi|449469501|ref|XP_004152458.1| PREDICTED: E2F transcription factor-like E2FE-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255540801|ref|XP_002511465.1| E2F, putative [Ricinus communis] gi|223550580|gb|EEF52067.1| E2F, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356512910|ref|XP_003525157.1| PREDICTED: E2F transcription factor-like E2FE-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query350
TAIR|locus:2100272354 DEL3 "DP-E2F-like protein 3" [ 0.902 0.892 0.477 9.6e-73
TAIR|locus:2100444403 DEL1 "DP-E2F-like 1" [Arabidop 0.497 0.431 0.494 2e-69
TAIR|locus:2147865359 DEL2 "DP-E2F-like 2" [Arabidop 0.502 0.490 0.544 1.4e-60
ZFIN|ZDB-GENE-030131-3527 723 e2f7 "E2F transcription factor 0.474 0.229 0.377 1.4e-25
UNIPROTKB|E1C985 745 E2F7 "Uncharacterized protein" 0.477 0.224 0.376 4.1e-25
UNIPROTKB|E1BE02 911 E2F7 "Transcription factor E2F 0.48 0.184 0.383 9.4e-23
UNIPROTKB|F6YVB9 862 e2f7 "Transcription factor E2F 0.471 0.191 0.381 1.6e-22
UNIPROTKB|F1P135 829 F1P135 "Uncharacterized protei 0.242 0.102 0.566 5.1e-20
UNIPROTKB|E9PP48355 E2F8 "Transcription factor E2F 0.242 0.239 0.544 9.7e-20
MGI|MGI:1922038 860 E2f8 "E2F transcription factor 0.242 0.098 0.533 9.3e-19
TAIR|locus:2100272 DEL3 "DP-E2F-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
 Identities = 171/358 (47%), Positives = 216/358 (60%)

Query:    12 REAEPDGKQFYSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNIL 71
             ++AE  G Q YSRKEKSLG+L S FL+LYNRD V+ IGLDDAA +LGVERRRIYDVVNIL
Sbjct:     9 QDAESLGLQIYSRKEKSLGVLVSNFLRLYNRDDVDLIGLDDAAGQLGVERRRIYDVVNIL 68

Query:    72 ESIGVVARQAKNLYSWQGFDAIPEALEVLKEEGLRENFNINGCTNSGNVLNDNENEGS-T 130
             ESIG+VAR+ KN YSW+GF  IP +L+ LKEEG+RE    +   NS  V N  E E   T
Sbjct:    69 ESIGIVARRGKNQYSWKGFGEIPRSLDELKEEGMRERLGYSSSNNSDKVSNGCEREEPLT 128

Query:   131 CTVTDGQDXXXXXXXXXXXXXLWLLTQNFVKLFLCSDVDMITLDSAAMALLGDSNNSTAM 190
              T  D ++             LWLL QNFVK+FLCSD D+ITLDSAA ALL DS +S  M
Sbjct:   129 LTPDDQENSSSSKMDQKKEKSLWLLAQNFVKMFLCSDDDLITLDSAAKALLSDSPDSVHM 188

Query:   191 RK-------------------------SRKPAFRWLGWKGNPCNRSAGFLDLNEPKKRVF 225
             R                          +RKPA+RWLG K +   R     +  EPK RVF
Sbjct:   189 RTKVRRLYDIANVFASMNLIEKTHIPVTRKPAYRWLGSK-SIAERGLSLFNSGEPK-RVF 246

Query:   226 GTDITNLRLKKNKVDSLTEKKSNPKLNVPKYFKHCNEESNPDESRLEQHSKHKSKGFVYG 285
             GT+ITNLR K+NK    + +K   ++    Y KH       DE   EQ SK  +  +V+G
Sbjct:   247 GTEITNLRAKRNKTYCSSIRK---QIG---YKKH-------DEENTEQESKPAASKYVFG 293

Query:   286 PFTPASISGIHDSRSKNTKQVLDFASLASTFRPKYHNEAVNGLFGHYVEAWKSWYAEV 343
             PF+P   S  ++ +    + +L+  +LAST++P+Y N+ + GL GH+ EAWK WYAEV
Sbjct:   294 PFSPIGASKTNNDKVGKGR-LLEIEALASTYQPQYCNQEITGLLGHFTEAWKKWYAEV 350
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005667 "transcription factor complex" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0003677 "DNA binding" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0006261 "DNA-dependent DNA replication" evidence=RCA
TAIR|locus:2100444 DEL1 "DP-E2F-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147865 DEL2 "DP-E2F-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3527 e2f7 "E2F transcription factor 7" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1C985 E2F7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BE02 E2F7 "Transcription factor E2F7" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F6YVB9 e2f7 "Transcription factor E2F7" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|F1P135 F1P135 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E9PP48 E2F8 "Transcription factor E2F8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1922038 E2f8 "E2F transcription factor 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RWL0E2FF_ARATHNo assigned EC number0.50130.91140.9011yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query350
pfam0231967 pfam02319, E2F_TDP, E2F/DP family winged-helix DNA 2e-23
pfam0231967 pfam02319, E2F_TDP, E2F/DP family winged-helix DNA 1e-08
>gnl|CDD|202203 pfam02319, E2F_TDP, E2F/DP family winged-helix DNA-binding domain Back     alignment and domain information 
 Score = 91.5 bits (228), Expect = 2e-23
 Identities = 33/67 (49%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 24 RKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGV-ERRRIYDVVNILESIGVVARQAK 82
          RKEKSLGLL  KFLKL  +       L++AA  L V ++RRIYD+ N+LE IG++ +++K
Sbjct: 1  RKEKSLGLLTQKFLKLCEKSPDGITDLNEAAKELDVKQKRRIYDITNVLEGIGLIEKKSK 60

Query: 83 NLYSWQG 89
          N   W G
Sbjct: 61 NEIRWIG 67

This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins. Length = 67
>gnl|CDD|202203 pfam02319, E2F_TDP, E2F/DP family winged-helix DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 350
KOG2578388 consensus Transcription factor E2F/dimerization pa 100.0
KOG2577354 consensus Transcription factor E2F/dimerization pa 99.87
PF0231971 E2F_TDP: E2F/DP family winged-helix DNA-binding do 99.86
KOG2578388 consensus Transcription factor E2F/dimerization pa 99.1
PF0231971 E2F_TDP: E2F/DP family winged-helix DNA-binding do 98.68
KOG2829326 consensus E2F-like protein [Transcription] 97.57
KOG2577354 consensus Transcription factor E2F/dimerization pa 96.2
PF0197868 TrmB: Sugar-specific transcriptional regulator Trm 94.51
cd0009267 HTH_CRP helix_turn_helix, cAMP Regulatory protein 92.03
PF0827955 HTH_11: HTH domain; InterPro: IPR013196 Winged hel 90.83
smart0034691 HTH_ICLR helix_turn_helix isocitrate lyase regulat 90.79
smart0042053 HTH_DEOR helix_turn_helix, Deoxyribose operon repr 90.15
PF0933952 HTH_IclR: IclR helix-turn-helix domain; InterPro: 89.48
smart0055068 Zalpha Z-DNA-binding domain in adenosine deaminase 88.95
PF1341248 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 86.42
smart0041866 HTH_ARSR helix_turn_helix, Arsenical Resistance Op 84.03
PF1280262 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP 84.01
cd0009078 HTH_ARSR Arsenical Resistance Operon Repressor and 83.4
PF0208283 Rrf2: Transcriptional regulator; InterPro: IPR0009 83.24
PF1373055 HTH_36: Helix-turn-helix domain 83.22
TIGR02944130 suf_reg_Xantho FeS assembly SUF system regulator, 81.97
PF0039264 GntR: Bacterial regulatory proteins, gntR family; 81.3
>KOG2578 consensus Transcription factor E2F/dimerization partner (TDP)-like proteins [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=2e-72  Score=538.33  Aligned_cols=338  Identities=41%  Similarity=0.638  Sum_probs=272.3

Q ss_pred             CCCcccCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCc
Q 018790            5 SSSAFGFREAEPDGKQFYSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNL   84 (350)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~sRkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~   84 (350)
                      ++++.++.++.....+.|+||+||||.||++||.+|.......+.|+++|.+|||+||||||||||||+||++.|.+||+
T Consensus         2 ~~av~~s~d~~~l~lqvysrkekslgvlv~nfl~lynr~dvdlvgLddaA~KlgVErRRIYDiVNvlEsig~var~~Knq   81 (388)
T KOG2578|consen    2 GGAVNTSADEADLDLQVYSRKEKSLGVLVQNFLILYNRSDVDLVGLDDAARKLGVERRRIYDIVNVLESIGAVARRGKNQ   81 (388)
T ss_pred             CCceecccchhhccchhhccccchhhHHHHHHHHHhcCCCcceechhhHHHhcCchHHHHHHHHHHHHHHHHHHhcccCc
Confidence            35667788888888999999999999999999999998888999999999999999999999999999999999999999


Q ss_pred             eEEecCCChHHHHHHHHHhchhccccc----cCCCCCCCCCCCCcCCCCCCcCCCCC---------CCCCccccccccch
Q 018790           85 YSWQGFDAIPEALEVLKEEGLRENFNI----NGCTNSGNVLNDNENEGSTCTVTDGQ---------DSSSSKIESKREKS  151 (350)
Q Consensus        85 y~W~G~~nI~~tL~~Lkeeg~~e~~~~----~~~~k~~d~~dd~e~~~sP~~~s~sd---------~~~p~~~d~rkeKS  151 (350)
                      |.|.||+.||.+|.+|++||+++.+..    .+...+++ +++.|..+.|.+.+..+         .+.+.+.|+|++||
T Consensus        82 YsWkGf~aiPral~eLqeEgvke~l~~~~~~~~~~m~s~-e~~~ee~~~s~tstptd~s~~g~l~e~S~~~k~DnrkekS  160 (388)
T KOG2578|consen   82 YSWKGFGAIPRALFELQEEGVKEGLPERVLRVNSAMVSF-EEESEERGVSCTSTPTDQSTDGLLEERSRSSKRDNRKEKS  160 (388)
T ss_pred             ccccchhhhhHHHHHHHHHHHhhcccceeeecccccccc-cccccccCCccccCCCCCCCCCcchhcCCCCcccchhhhH
Confidence            999999999999999999999998763    23333333 22333323333322222         23346788999999


Q ss_pred             HHHHHHHHHHHHhcCCCc-eecHHHHHHHHcCCCCCCccccc-------------------------CCCCceeeccCCC
Q 018790          152 LWLLTQNFVKLFLCSDVD-MITLDSAAMALLGDSNNSTAMRK-------------------------SRKPAFRWLGWKG  205 (350)
Q Consensus       152 L~~LSQkFVmLFL~s~~~-~ISLdeAAkiL~gd~~~~~~~r~-------------------------~rKPaF~WlG~~~  205 (350)
                      |++|||+|||||||++.. .||||.||+.|++|++++..||+                         +|||||+|+|+++
T Consensus       161 L~lL~qnFvklflcs~~~~lvslD~Aak~Ll~ds~~~~~mRtkvRRLYDIANVlssm~LIeKtH~l~trkPafrwlG~~~  240 (388)
T KOG2578|consen  161 LWLLAQNFVKLFLCSDDDILVSLDSAAKALLKDSEDEPPMRTKVRRLYDIANVLSSMNLIEKTHYLFTRKPAFRWLGSKP  240 (388)
T ss_pred             HHHHHHHHHHheeccccceEEeecHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhheeCCCc
Confidence            999999999999999876 99999999999999999988887                         9999999999999


Q ss_pred             CCCCC----CCCccCCCCcccccCCccccchhhcccccccccc-ccCCCCCCCCcccccCCCCCCcchhh-hhhhccCCC
Q 018790          206 NPCNR----SAGFLDLNEPKKRVFGTDITNLRLKKNKVDSLTE-KKSNPKLNVPKYFKHCNEESNPDESR-LEQHSKHKS  279 (350)
Q Consensus       206 ~~~~~----~~~~~~~~~~~k~~f~~~~t~~~~kr~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  279 (350)
                      .++..    +.+.+..+++|+|+|||+||||++||+|..|+.. +--.....+.   +|......++... +.-..++..
T Consensus       241 ~~t~sf~~gs~sL~~~n~~K~rafgteItnvnakr~kSs~s~~en~~~~~~~~~---k~~~e~~~ye~~~~l~~~~~p~~  317 (388)
T KOG2578|consen  241 IQTGSFFQGSRSLSEQNLPKPRAFGTEITNVNAKRNKSSCSSMENFMFAEVVTK---KHAAEKMRYEAFAQLSSRLKPLP  317 (388)
T ss_pred             cccccccccchhHhhcCCCCcccCCccccchhhhhccCcchhhhhHHHHHhhhh---hccchhhhhhhhhhhhhccCCcc
Confidence            99984    8889999999999999999999999999966544 3222222333   4433322222111 123367788


Q ss_pred             CCcccccCCC-CccccccCCCC--CCcccccchhhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHhhcc
Q 018790          280 KGFVYGPFTP-ASISGIHDSRS--KNTKQVLDFASLASTFRPKYHNEAVNGLFGHYVEAWKSWYAEVGDK  346 (350)
Q Consensus       280 ~~~~~gpf~p-~~~~~~~~~~~--~~~~~~~d~e~la~~~~pqy~n~~l~~lf~hy~eawkswy~e~~~~  346 (350)
                      ++|+||||+| ++.+....-.+  ...++..++|+|++.|+|+|||.++..+|.||.+++.+-..+.++.
T Consensus       318 ~~~~~gp~~P~igt~~t~~~~~~~~~srr~f~ie~l~sdyqPsy~n~e~~~~~~~~~~~f~v~k~~~~r~  387 (388)
T KOG2578|consen  318 MAYLFGPFLPEIGTSQTNKQFNFPATSRRLFNIEALTSDYQPSYCNSESKKFKQGTNSTFQVVKKGETRP  387 (388)
T ss_pred             cccccCCCCCCCCCcchhhccCCCCCccccccchhcccccCccccChhhhhhhcccceeeeeeccccCCC
Confidence            8999999999 55544443223  4566899999999999999999999999999999998877766653

>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription] Back     alignment and domain information
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle Back     alignment and domain information
>KOG2578 consensus Transcription factor E2F/dimerization partner (TDP)-like proteins [Transcription] Back     alignment and domain information
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle Back     alignment and domain information
>KOG2829 consensus E2F-like protein [Transcription] Back     alignment and domain information
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription] Back     alignment and domain information
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis Back     alignment and domain information
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family Back     alignment and domain information
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets Back     alignment and domain information
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation Back     alignment and domain information
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor Back     alignment and domain information
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities Back     alignment and domain information
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases Back     alignment and domain information
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A Back     alignment and domain information
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor Back     alignment and domain information
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B Back     alignment and domain information
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors Back     alignment and domain information
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp Back     alignment and domain information
>PF13730 HTH_36: Helix-turn-helix domain Back     alignment and domain information
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial Back     alignment and domain information
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query350
1cf7_A76 Structural Basis Of Dna Recognition By The Heterodi 4e-10
>pdb|1CF7|A Chain A, Structural Basis Of Dna Recognition By The Heterodimeric Cell Cycle Transcription Factor E2f-Dp Length = 76 Back     alignment and structure 
Iteration: 1

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 48/70 (68%), Gaps = 5/70 (7%)
Query: 23 SRKEKSLGLLCSKFLKLYN--RDGVESIGLDDAASRLGV-ERRRIYDVVNILESIGVVAR 79
          SR EKSLGLL +KF+ L    +DGV  + L  AA  L V ++RRIYD+ N+LE IG++ +
Sbjct: 6  SRHEKSLGLLTTKFVSLLQEAKDGVLDLKL--AADTLAVRQKRRIYDITNVLEGIGLIEK 63
Query: 80 QAKNLYSWQG 89
          ++KN   W+G
Sbjct: 64 KSKNSIQWKG 73

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query350
1cf7_A76 Protein (transcription factor E2F-4); E2F, winged- 2e-25
1cf7_A76 Protein (transcription factor E2F-4); E2F, winged- 3e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Length = 76 Back     alignment and structure
 Score = 96.9 bits (241), Expect = 2e-25
 Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)

Query: 22 YSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGV-ERRRIYDVVNILESIGVVARQ 80
           SR EKSLGLL +KF+ L        + L  AA  L V ++RRIYD+ N+LE IG++ ++
Sbjct: 5  PSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKK 64

Query: 81 AKNLYSWQGFD 91
          +KN   W+G  
Sbjct: 65 SKNSIQWKGVG 75
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Length = 76 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query350
1cf7_A76 Protein (transcription factor E2F-4); E2F, winged- 99.93
1cf7_B95 Protein (transcription factor DP-2); E2F, winged-h 99.23
1cf7_A76 Protein (transcription factor E2F-4); E2F, winged- 98.61
1qgp_A77 Protein (double stranded RNA adenosine deaminase); 92.65
1qbj_A81 Protein (double-stranded RNA specific adenosine D 91.76
2heo_A67 Z-DNA binding protein 1; protein DLM1-Z-DNA comple 91.13
2xvc_A59 ESCRT-III, SSO0910; cell cycle, cell division, cyt 90.64
1oyi_A82 Double-stranded RNA-binding protein; (alpha+beta) 90.33
2htj_A81 P fimbrial regulatory protein KS71A; winged helix- 88.06
3pqk_A102 Biofilm growth-associated repressor; helix-turn-he 83.54
2y75_A129 HTH-type transcriptional regulator CYMR; DNA bindi 83.23
3r0a_A123 Putative transcriptional regulator; structural gen 83.17
2qko_A215 Possible transcriptional regulator, TETR family P; 83.02
2kgf_A140 Capsid protein P27; retrovirus capsid protein, N-t 82.07
2kko_A108 Possible transcriptional regulatory protein (possi 82.07
1u2w_A122 CADC repressor, cadmium efflux system accessory pr 80.78
3jth_A98 Transcription activator HLYU; transcription factor 80.28
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Back     alignment and structure
Probab=99.93  E-value=4e-27  Score=185.86  Aligned_cols=73  Identities=42%  Similarity=0.697  Sum_probs=65.5

Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCC-ceeeehhhHHHHhhhhhhhhcCCCceEEecCC
Q 018790           19 KQFYSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGV-ERRRIYDVVNILESIGVVARQAKNLYSWQGFD   91 (350)
Q Consensus        19 ~~~~sRkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV-~RRRIYDIvNVLEslGli~K~~KN~y~W~G~~   91 (350)
                      +...+|+++||++||++||++|.+.+++.|+|+++|++|+| +|||||||+|||||||||+|.+||.|+|+|++
T Consensus         2 ~~~~~R~~~SL~~lt~kFi~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~K~~k~~~~W~G~~   75 (76)
T 1cf7_A            2 PGTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGVG   75 (76)
T ss_dssp             ----CTTTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEEETTEEEEC---
T ss_pred             CCCCCCccCcHHHHHHHHHHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhcceeecCCCcEEEeCCC
Confidence            35789999999999999999999999999999999999999 99999999999999999999999999999986
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Back     alignment and structure
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Back     alignment and structure
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 Back     alignment and structure
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A Back     alignment and structure
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A Back     alignment and structure
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus} Back     alignment and structure
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 Back     alignment and structure
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 Back     alignment and structure
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A Back     alignment and structure
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis} Back     alignment and structure
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei} Back     alignment and structure
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP} Back     alignment and structure
>2kgf_A Capsid protein P27; retrovirus capsid protein, N-terminal core domain (SCOP), viral protein; NMR {Mason-pfizer monkey virus} Back     alignment and structure
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A Back     alignment and structure
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A Back     alignment and structure
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 350
d1cf7a_67 a.4.5.17 (A:) Cell cycle transcription factor E2F- 1e-24
d1cf7a_67 a.4.5.17 (A:) Cell cycle transcription factor E2F- 1e-08
d1cf7b_82 a.4.5.17 (B:) Cell cycle transcription factor DP-2 2e-04
>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]} Length = 67 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Cell cycle transcription factor e2f-dp
domain: Cell cycle transcription factor E2F-4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.9 bits (231), Expect = 1e-24
 Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 23 SRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGV-ERRRIYDVVNILESIGVVARQA 81
          SR EKSLGLL +KF+ L        + L  AA  L V ++RRIYD+ N+LE IG++ +++
Sbjct: 1  SRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKS 60

Query: 82 KNLYSWQ 88
          KN   W+
Sbjct: 61 KNSIQWK 67
>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]} Length = 67 Back     information, alignment and structure
>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query350
d1cf7a_67 Cell cycle transcription factor E2F-4 {Human (Homo 99.93
d1cf7a_67 Cell cycle transcription factor E2F-4 {Human (Homo 98.64
d1cf7b_82 Cell cycle transcription factor DP-2 {Human (Homo 98.55
d1sfxa_109 Hypothetical protein AF2008 {Archaeoglobus fulgidu 92.21
d1j5ya165 Putative transcriptional regulator TM1602, N-termi 90.45
d1mkma175 Transcriptional regulator IclR, N-terminal domain 89.54
d1biaa163 Biotin repressor, N-terminal domain {Escherichia c 86.33
d1lvaa364 C-terminal fragment of elongation factor SelB {Moo 84.96
d1qzza192 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 83.42
d1bl0a154 MarA {Escherichia coli [TaxId: 562]} 82.97
d1tw3a185 Carminomycin 4-O-methyltransferase {Streptomyces p 82.79
d1ku9a_151 DNA-binding protein Mj223 {Archaeon Methanococcus 82.52
d1jhfa171 LexA repressor, N-terminal DNA-binding domain {Esc 80.09
>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Cell cycle transcription factor e2f-dp
domain: Cell cycle transcription factor E2F-4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.9e-27  Score=182.15  Aligned_cols=66  Identities=45%  Similarity=0.772  Sum_probs=64.6

Q ss_pred             CCCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCC-ceeeehhhHHHHhhhhhhhhcCCCceEEe
Q 018790           23 SRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGV-ERRRIYDVVNILESIGVVARQAKNLYSWQ   88 (350)
Q Consensus        23 sRkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV-~RRRIYDIvNVLEslGli~K~~KN~y~W~   88 (350)
                      +|+|+|||+||++||.+|.+.|++.++|+++|.+|+| +|||||||+|||||||||+|.+||+|+|.
T Consensus         1 sR~ekSLglLt~kFl~l~~~~~~~~~~L~~aa~~L~v~~kRRiYDI~NVLe~igli~K~~Kn~~~W~   67 (67)
T d1cf7a_           1 SRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWK   67 (67)
T ss_dssp             CTTTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEEETTEEEEC
T ss_pred             ChhhhhHHHHHHHHHHHHhhCCCCeeeHHHHHHHhcCcchhhHHHHHHHHhhhhhhhcccCCccccC
Confidence            6999999999999999999999999999999999999 79999999999999999999999999995
>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]} Back     information, alignment and structure
>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure